Query 043350
Match_columns 1133
No_of_seqs 1025 out of 4605
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 04:11:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043350.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043350hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0566 Inositol-1,4,5-triphos 100.0 9.6E-86 2.1E-90 763.1 26.7 341 536-942 506-854 (1080)
2 PLN03191 Type I inositol-1,4,5 100.0 1.1E-78 2.3E-83 693.9 29.3 251 637-933 348-605 (621)
3 smart00128 IPPc Inositol polyp 100.0 1.4E-74 3E-79 647.8 27.4 299 571-925 2-310 (310)
4 COG5411 Phosphatidylinositol 5 100.0 8.7E-65 1.9E-69 552.4 19.6 330 549-938 7-345 (460)
5 KOG0271 Notchless-like WD40 re 100.0 2.7E-40 5.9E-45 350.4 25.1 345 98-544 113-479 (480)
6 KOG0271 Notchless-like WD40 re 100.0 2.8E-36 6E-41 320.0 24.9 324 208-585 111-465 (480)
7 KOG0318 WD40 repeat stress pro 100.0 1.1E-32 2.3E-37 303.7 36.1 405 90-550 49-564 (603)
8 KOG0319 WD40-repeat-containing 100.0 3.1E-33 6.7E-38 319.1 32.6 405 90-551 92-582 (775)
9 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-33 3.5E-38 303.5 20.5 273 210-544 173-458 (459)
10 KOG0319 WD40-repeat-containing 100.0 1.4E-31 3.1E-36 305.5 28.6 430 109-583 68-578 (775)
11 KOG0272 U4/U6 small nuclear ri 100.0 3.1E-32 6.7E-37 293.6 20.8 273 98-505 173-458 (459)
12 KOG0306 WD40-repeat-containing 100.0 7.9E-30 1.7E-34 290.8 31.4 388 109-546 71-664 (888)
13 KOG0291 WD40-repeat-containing 100.0 9.1E-29 2E-33 282.3 39.0 385 109-548 61-510 (893)
14 KOG0318 WD40 repeat stress pro 100.0 3.1E-28 6.7E-33 268.6 37.2 365 106-546 193-602 (603)
15 KOG0286 G-protein beta subunit 100.0 7.6E-29 1.6E-33 256.2 29.7 289 142-505 48-343 (343)
16 KOG0315 G-protein beta subunit 100.0 6.6E-29 1.4E-33 251.1 28.3 291 115-527 10-309 (311)
17 KOG0273 Beta-transducin family 100.0 5.8E-29 1.2E-33 271.4 29.7 329 143-545 173-522 (524)
18 KOG0286 G-protein beta subunit 100.0 2.8E-28 6.1E-33 252.0 28.2 284 206-544 49-343 (343)
19 PTZ00312 inositol-1,4,5-tripho 100.0 3.2E-30 6.9E-35 266.7 11.2 187 693-917 64-356 (356)
20 KOG0306 WD40-repeat-containing 100.0 2.1E-27 4.6E-32 271.1 33.9 389 114-548 33-624 (888)
21 KOG0279 G protein beta subunit 100.0 1.4E-27 2.9E-32 245.9 26.7 289 142-507 8-313 (315)
22 KOG0291 WD40-repeat-containing 100.0 7E-26 1.5E-30 258.9 41.0 413 99-547 95-613 (893)
23 KOG0263 Transcription initiati 100.0 2.5E-28 5.4E-33 282.7 20.8 243 212-548 378-651 (707)
24 KOG0295 WD40 repeat-containing 100.0 1E-27 2.2E-32 254.6 22.1 287 207-544 103-404 (406)
25 KOG0315 G-protein beta subunit 100.0 4.4E-27 9.6E-32 238.0 24.1 263 169-549 12-291 (311)
26 KOG0645 WD40 repeat protein [G 100.0 2.3E-26 5E-31 235.8 28.0 287 142-546 7-311 (312)
27 KOG0273 Beta-transducin family 100.0 6E-27 1.3E-31 255.7 24.9 307 210-585 176-507 (524)
28 KOG0263 Transcription initiati 100.0 2.8E-27 6.1E-32 274.0 23.1 275 158-534 380-702 (707)
29 KOG0281 Beta-TrCP (transducin 99.9 1.4E-27 3E-32 250.6 16.0 267 155-549 196-480 (499)
30 KOG0279 G protein beta subunit 99.9 4.3E-26 9.3E-31 234.8 26.1 251 207-553 10-269 (315)
31 KOG0285 Pleiotropic regulator 99.9 2.3E-26 4.9E-31 242.9 23.2 279 96-508 147-440 (460)
32 KOG0295 WD40 repeat-containing 99.9 1.9E-26 4.2E-31 244.9 22.1 298 88-506 96-405 (406)
33 KOG0265 U5 snRNP-specific prot 99.9 4.8E-26 1E-30 236.6 24.4 278 206-542 41-334 (338)
34 KOG0284 Polyadenylation factor 99.9 4.9E-27 1.1E-31 252.3 17.4 278 153-550 93-384 (464)
35 KOG0296 Angio-associated migra 99.9 9.4E-26 2E-30 239.9 25.9 326 96-546 60-398 (399)
36 KOG0282 mRNA splicing factor [ 99.9 3.9E-27 8.5E-32 258.4 14.0 281 206-544 208-503 (503)
37 KOG0285 Pleiotropic regulator 99.9 3.1E-25 6.7E-30 234.4 22.6 276 207-545 146-438 (460)
38 KOG0645 WD40 repeat protein [G 99.9 1.1E-24 2.5E-29 223.5 26.0 274 108-507 19-311 (312)
39 KOG0284 Polyadenylation factor 99.9 6.3E-26 1.4E-30 243.9 15.4 270 107-507 100-380 (464)
40 KOG0276 Vesicle coat complex C 99.9 2.3E-24 5E-29 241.7 27.6 252 108-431 18-279 (794)
41 KOG0313 Microtubule binding pr 99.9 3.4E-24 7.4E-29 228.9 27.1 276 115-507 115-418 (423)
42 KOG0281 Beta-TrCP (transducin 99.9 4E-26 8.7E-31 239.7 12.1 225 211-547 196-429 (499)
43 KOG0265 U5 snRNP-specific prot 99.9 2.5E-24 5.5E-29 223.8 25.3 289 141-505 39-336 (338)
44 KOG0266 WD40 repeat-containing 99.9 2.7E-24 5.9E-29 256.7 29.0 277 211-545 158-453 (456)
45 KOG0293 WD40 repeat-containing 99.9 7.9E-25 1.7E-29 235.1 20.8 282 207-547 219-514 (519)
46 cd00200 WD40 WD40 domain, foun 99.9 1.2E-23 2.7E-28 232.5 30.1 277 208-544 5-289 (289)
47 PLN00181 protein SPA1-RELATED; 99.9 2.7E-23 5.8E-28 266.1 34.3 302 124-545 457-792 (793)
48 KOG1408 WD40 repeat protein [F 99.9 1.3E-23 2.9E-28 237.7 27.5 375 114-547 269-714 (1080)
49 KOG0266 WD40 repeat-containing 99.9 1.2E-23 2.5E-28 251.2 26.6 275 108-507 164-454 (456)
50 KOG0565 Inositol polyphosphate 99.9 3.8E-25 8.3E-30 221.7 11.6 143 652-820 2-145 (145)
51 KOG0292 Vesicle coat complex C 99.9 2E-23 4.3E-28 241.7 24.2 287 212-551 9-326 (1202)
52 KOG0313 Microtubule binding pr 99.9 4.9E-23 1.1E-27 220.1 23.6 298 147-545 103-417 (423)
53 KOG0293 WD40 repeat-containing 99.9 2.1E-23 4.5E-28 224.3 20.7 279 104-507 225-513 (519)
54 cd00200 WD40 WD40 domain, foun 99.9 4E-22 8.7E-27 220.4 31.1 280 142-505 2-289 (289)
55 KOG0301 Phospholipase A2-activ 99.9 1.4E-22 3E-27 230.9 26.5 287 142-559 7-301 (745)
56 KOG0292 Vesicle coat complex C 99.9 1.2E-22 2.7E-27 235.2 26.3 299 109-508 15-322 (1202)
57 KOG0316 Conserved WD40 repeat- 99.9 1.2E-22 2.7E-27 204.2 21.8 272 142-544 10-297 (307)
58 KOG0275 Conserved WD40 repeat- 99.9 4.1E-23 8.8E-28 215.1 18.2 283 210-544 211-507 (508)
59 KOG0276 Vesicle coat complex C 99.9 7.5E-23 1.6E-27 229.7 20.6 274 158-550 15-302 (794)
60 KOG0316 Conserved WD40 repeat- 99.9 1.3E-22 2.9E-27 204.0 19.8 240 253-548 8-259 (307)
61 KOG0282 mRNA splicing factor [ 99.9 3.3E-23 7.3E-28 227.7 15.8 287 90-505 204-503 (503)
62 KOG0288 WD40 repeat protein Ti 99.9 5.5E-23 1.2E-27 221.7 16.5 282 142-505 168-459 (459)
63 KOG0278 Serine/threonine kinas 99.9 9.4E-23 2E-27 206.5 17.0 283 92-507 6-297 (334)
64 PLN00181 protein SPA1-RELATED; 99.9 1.7E-21 3.8E-26 249.4 33.1 277 108-506 488-792 (793)
65 KOG0308 Conserved WD40 repeat- 99.9 1.9E-22 4.1E-27 228.0 20.2 354 112-555 34-402 (735)
66 KOG1063 RNA polymerase II elon 99.9 1.7E-21 3.7E-26 221.8 26.2 409 98-547 52-649 (764)
67 KOG0300 WD40 repeat-containing 99.9 7.8E-22 1.7E-26 205.2 21.3 306 116-549 125-479 (481)
68 KOG0274 Cdc4 and related F-box 99.9 1E-21 2.2E-26 234.0 24.4 276 211-554 207-490 (537)
69 KOG0296 Angio-associated migra 99.9 1.4E-21 3E-26 208.3 22.7 291 205-554 57-364 (399)
70 KOG1539 WD repeat protein [Gen 99.9 6.3E-21 1.4E-25 221.2 29.4 383 116-556 173-616 (910)
71 KOG0277 Peroxisomal targeting 99.9 1.5E-21 3.3E-26 198.7 20.1 232 212-544 60-307 (311)
72 KOG0274 Cdc4 and related F-box 99.9 3E-21 6.5E-26 230.0 26.1 293 114-545 217-521 (537)
73 KOG0275 Conserved WD40 repeat- 99.9 6.9E-22 1.5E-26 206.0 17.6 276 98-505 211-507 (508)
74 KOG0283 WD40 repeat-containing 99.9 1.5E-21 3.2E-26 228.8 21.0 205 207-508 364-577 (712)
75 KOG0643 Translation initiation 99.9 1.1E-20 2.3E-25 193.7 24.5 285 205-547 3-318 (327)
76 KOG0640 mRNA cleavage stimulat 99.9 9.6E-21 2.1E-25 197.1 23.7 287 207-544 107-424 (430)
77 KOG0268 Sof1-like rRNA process 99.9 1.1E-21 2.3E-26 208.5 15.9 275 208-549 62-348 (433)
78 KOG0301 Phospholipase A2-activ 99.9 8.6E-21 1.9E-25 216.4 23.5 253 114-507 24-288 (745)
79 KOG0278 Serine/threonine kinas 99.9 3.1E-21 6.7E-26 195.6 15.7 284 204-550 6-301 (334)
80 KOG2106 Uncharacterized conser 99.9 1E-18 2.3E-23 192.5 36.4 398 98-545 102-625 (626)
81 KOG0283 WD40 repeat-containing 99.9 1.3E-20 2.8E-25 221.0 21.8 245 210-550 265-580 (712)
82 KOG0288 WD40 repeat protein Ti 99.9 3.9E-21 8.6E-26 207.5 15.6 276 205-544 168-459 (459)
83 KOG0772 Uncharacterized conser 99.9 3.3E-20 7.2E-25 204.7 23.1 299 142-544 160-485 (641)
84 KOG2096 WD40 repeat protein [G 99.9 1.3E-19 2.9E-24 189.4 24.6 285 207-544 81-400 (420)
85 KOG0308 Conserved WD40 repeat- 99.9 6.8E-21 1.5E-25 215.6 16.1 241 223-548 36-287 (735)
86 KOG0641 WD40 repeat protein [G 99.9 5.6E-19 1.2E-23 176.4 27.7 296 211-546 31-349 (350)
87 KOG0277 Peroxisomal targeting 99.8 3E-20 6.6E-25 189.3 18.7 258 123-506 36-308 (311)
88 KOG0268 Sof1-like rRNA process 99.8 1.4E-20 3E-25 200.1 16.5 278 139-507 56-345 (433)
89 PTZ00421 coronin; Provisional 99.8 5.5E-19 1.2E-23 210.5 31.1 283 164-545 29-330 (493)
90 KOG0973 Histone transcription 99.8 1.9E-19 4E-24 216.1 24.9 317 109-508 19-356 (942)
91 KOG0647 mRNA export protein (c 99.8 2.4E-19 5.3E-24 187.0 22.6 264 158-495 29-311 (347)
92 KOG0639 Transducin-like enhanc 99.8 9.5E-20 2.1E-24 200.0 20.0 279 209-545 416-703 (705)
93 KOG0772 Uncharacterized conser 99.8 1.3E-19 2.9E-24 199.9 21.2 309 91-505 158-485 (641)
94 KOG0294 WD40 repeat-containing 99.8 7.1E-19 1.5E-23 184.5 25.4 262 118-509 4-283 (362)
95 KOG1446 Histone H3 (Lys4) meth 99.8 2.6E-18 5.7E-23 181.4 29.4 279 211-546 13-303 (311)
96 KOG2048 WD40 repeat protein [G 99.8 3.9E-18 8.5E-23 194.7 32.7 374 106-546 28-548 (691)
97 PTZ00420 coronin; Provisional 99.8 1.5E-18 3.2E-23 207.7 30.6 249 173-531 52-319 (568)
98 KOG0973 Histone transcription 99.8 2E-19 4.3E-24 215.9 23.1 293 158-547 15-356 (942)
99 KOG1539 WD repeat protein [Gen 99.8 9.1E-19 2E-23 203.4 27.6 381 108-544 207-646 (910)
100 KOG0641 WD40 repeat protein [G 99.8 3.2E-18 7E-23 171.0 27.7 289 158-507 34-349 (350)
101 KOG1407 WD40 repeat protein [F 99.8 8E-19 1.7E-23 179.7 23.7 264 208-532 16-287 (313)
102 KOG0640 mRNA cleavage stimulat 99.8 3.3E-19 7.2E-24 185.7 21.0 289 98-467 110-425 (430)
103 KOG0310 Conserved WD40 repeat- 99.8 3.7E-19 7.9E-24 196.6 22.1 266 108-467 31-308 (487)
104 KOG0299 U3 snoRNP-associated p 99.8 8.5E-19 1.8E-23 192.3 24.7 282 142-496 135-444 (479)
105 KOG0289 mRNA splicing factor [ 99.8 6.6E-19 1.4E-23 191.3 23.2 264 113-506 229-505 (506)
106 KOG1976 Inositol polyphosphate 99.8 5.5E-21 1.2E-25 198.1 6.5 183 693-920 153-389 (391)
107 KOG0294 WD40 repeat-containing 99.8 4.7E-19 1E-23 185.9 20.4 236 205-547 36-282 (362)
108 KOG1063 RNA polymerase II elon 99.8 1.8E-18 3.9E-23 197.4 26.2 407 98-546 189-699 (764)
109 KOG1332 Vesicle coat complex C 99.8 4E-19 8.7E-24 180.2 18.6 243 106-507 14-286 (299)
110 PTZ00421 coronin; Provisional 99.8 4.5E-18 9.8E-23 202.7 27.1 252 210-548 18-292 (493)
111 KOG0289 mRNA splicing factor [ 99.8 4.3E-18 9.3E-23 185.0 24.0 272 212-545 219-505 (506)
112 KOG0643 Translation initiation 99.8 7.9E-18 1.7E-22 172.9 24.6 290 95-467 5-316 (327)
113 KOG1408 WD40 repeat protein [F 99.8 6.3E-18 1.4E-22 192.1 26.1 331 109-508 330-714 (1080)
114 KOG0305 Anaphase promoting com 99.8 4.2E-18 9.1E-23 195.8 24.9 259 166-548 187-463 (484)
115 KOG0647 mRNA export protein (c 99.8 6.4E-18 1.4E-22 176.4 23.2 256 212-527 27-302 (347)
116 KOG1036 Mitotic spindle checkp 99.8 9.2E-18 2E-22 176.3 22.8 265 158-497 15-294 (323)
117 KOG2048 WD40 repeat protein [G 99.8 4.3E-17 9.4E-22 186.3 29.9 285 212-547 25-320 (691)
118 KOG4283 Transcription-coupled 99.8 1.6E-17 3.5E-22 172.3 23.9 301 207-547 38-366 (397)
119 KOG2445 Nuclear pore complex c 99.8 1.3E-17 2.8E-22 174.5 23.3 286 207-545 8-317 (361)
120 KOG1446 Histone H3 (Lys4) meth 99.8 7.3E-17 1.6E-21 170.5 28.8 269 158-507 16-303 (311)
121 KOG0305 Anaphase promoting com 99.8 1.8E-17 3.9E-22 190.6 26.3 266 115-508 188-462 (484)
122 KOG1332 Vesicle coat complex C 99.8 1.2E-18 2.6E-23 176.8 14.6 253 208-546 7-286 (299)
123 KOG0264 Nucleosome remodeling 99.8 7.5E-18 1.6E-22 185.3 21.2 264 99-469 123-405 (422)
124 PTZ00420 coronin; Provisional 99.8 5.8E-17 1.3E-21 194.0 30.5 144 120-292 49-198 (568)
125 KOG0310 Conserved WD40 repeat- 99.8 1.9E-17 4.1E-22 183.2 24.1 267 213-543 27-306 (487)
126 KOG0299 U3 snoRNP-associated p 99.8 1.3E-17 2.9E-22 182.9 22.8 282 207-544 137-454 (479)
127 KOG0646 WD40 repeat protein [G 99.8 5.7E-18 1.2E-22 186.3 19.8 305 118-527 10-328 (476)
128 KOG1407 WD40 repeat protein [F 99.8 7.9E-18 1.7E-22 172.5 19.2 243 256-551 14-266 (313)
129 KOG0264 Nucleosome remodeling 99.8 7.1E-18 1.5E-22 185.5 19.6 252 210-546 122-404 (422)
130 KOG0639 Transducin-like enhanc 99.8 9E-18 1.9E-22 184.6 19.3 279 153-506 416-703 (705)
131 KOG2096 WD40 repeat protein [G 99.8 2.5E-17 5.5E-22 172.6 21.3 325 93-518 79-416 (420)
132 KOG0321 WD40 repeat-containing 99.8 5.1E-18 1.1E-22 192.1 17.0 308 166-547 63-392 (720)
133 KOG0300 WD40 repeat-containing 99.8 3.7E-17 8E-22 170.7 19.8 286 109-507 154-476 (481)
134 KOG0270 WD40 repeat-containing 99.7 7.5E-17 1.6E-21 176.5 19.8 269 174-550 149-453 (463)
135 KOG1036 Mitotic spindle checkp 99.7 3.3E-16 7.1E-21 164.7 23.5 261 212-536 13-294 (323)
136 KOG0269 WD40 repeat-containing 99.7 2.9E-17 6.2E-22 189.9 17.0 232 215-545 90-339 (839)
137 KOG0646 WD40 repeat protein [G 99.7 1.3E-16 2.9E-21 175.6 20.7 251 280-548 14-309 (476)
138 KOG4283 Transcription-coupled 99.7 3E-16 6.5E-21 163.0 20.5 286 114-506 55-364 (397)
139 KOG1274 WD40 repeat protein [G 99.7 9.3E-15 2E-19 172.5 34.6 240 109-412 19-262 (933)
140 KOG0267 Microtubule severing p 99.7 1.4E-17 3.1E-22 190.8 10.2 246 113-536 2-258 (825)
141 KOG4328 WD40 protein [Function 99.7 4.9E-16 1.1E-20 170.5 21.1 289 205-544 179-493 (498)
142 KOG0650 WD40 repeat nucleolar 99.7 5.8E-16 1.3E-20 174.2 21.6 284 205-543 393-732 (733)
143 KOG0321 WD40 repeat-containing 99.7 8.8E-16 1.9E-20 174.2 22.9 292 114-467 63-390 (720)
144 KOG2106 Uncharacterized conser 99.7 3.2E-14 6.9E-19 157.5 34.3 360 110-550 72-481 (626)
145 KOG1445 Tumor-specific antigen 99.7 1.6E-15 3.5E-20 170.6 22.7 107 441-547 629-751 (1012)
146 KOG0269 WD40 repeat-containing 99.7 2.2E-16 4.8E-21 182.6 15.6 230 112-407 97-335 (839)
147 KOG4378 Nuclear protein COP1 [ 99.7 1.8E-15 4E-20 166.5 21.5 289 121-533 8-309 (673)
148 KOG2445 Nuclear pore complex c 99.7 3.9E-15 8.5E-20 156.1 22.0 283 106-477 16-331 (361)
149 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 3.8E-14 8.2E-19 159.9 31.8 283 116-527 2-299 (300)
150 KOG1273 WD40 repeat protein [G 99.7 4.7E-15 1E-19 155.6 20.5 254 215-507 26-322 (405)
151 KOG2055 WD40 repeat protein [G 99.7 7.1E-15 1.5E-19 161.5 22.4 276 212-546 213-512 (514)
152 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 5.2E-14 1.1E-18 158.8 29.4 261 225-549 2-282 (300)
153 KOG0270 WD40 repeat-containing 99.7 4.3E-15 9.4E-20 162.8 19.4 203 207-508 238-450 (463)
154 KOG0267 Microtubule severing p 99.7 2.7E-16 5.9E-21 180.4 10.3 220 112-404 37-260 (825)
155 KOG1274 WD40 repeat protein [G 99.6 2.3E-14 4.9E-19 169.3 26.1 260 209-527 10-279 (933)
156 KOG0302 Ribosome Assembly prot 99.6 4.5E-15 9.7E-20 159.3 17.4 219 257-550 146-382 (440)
157 KOG2055 WD40 repeat protein [G 99.6 3.4E-14 7.5E-19 156.2 23.8 280 158-507 215-512 (514)
158 KOG0650 WD40 repeat nucleolar 99.6 1.3E-14 2.8E-19 163.5 19.3 281 142-504 393-732 (733)
159 KOG0302 Ribosome Assembly prot 99.6 3.6E-14 7.8E-19 152.5 19.5 208 158-410 153-376 (440)
160 KOG2919 Guanine nucleotide-bin 99.6 3.2E-14 7E-19 150.0 18.1 329 5-404 20-362 (406)
161 KOG0642 Cell-cycle nuclear pro 99.6 1.3E-14 2.9E-19 163.3 15.3 244 206-518 288-573 (577)
162 KOG2919 Guanine nucleotide-bin 99.6 3.3E-14 7.1E-19 149.9 17.2 254 265-549 52-330 (406)
163 KOG0307 Vesicle coat complex C 99.6 1.4E-14 3.1E-19 175.1 16.4 273 213-538 65-379 (1049)
164 KOG1538 Uncharacterized conser 99.6 1.1E-12 2.5E-17 148.8 30.1 241 106-407 15-288 (1081)
165 KOG4328 WD40 protein [Function 99.6 2.2E-13 4.8E-18 149.9 22.7 297 142-508 179-496 (498)
166 KOG1963 WD40 repeat protein [G 99.6 1.2E-12 2.6E-17 155.0 30.1 315 210-548 203-585 (792)
167 KOG1538 Uncharacterized conser 99.6 8E-14 1.7E-18 158.0 18.8 267 158-547 14-294 (1081)
168 KOG0642 Cell-cycle nuclear pro 99.6 3.7E-14 8.1E-19 159.7 15.8 272 142-479 287-573 (577)
169 KOG1009 Chromatin assembly com 99.6 1.6E-13 3.4E-18 149.2 19.6 169 212-407 13-190 (434)
170 COG2319 FOG: WD40 repeat [Gene 99.6 1.9E-11 4.2E-16 142.4 38.9 353 109-547 71-443 (466)
171 KOG0649 WD40 repeat protein [G 99.6 1.7E-12 3.6E-17 132.2 25.0 246 111-409 18-271 (325)
172 KOG0322 G-protein beta subunit 99.5 1.3E-13 2.8E-18 142.0 14.4 264 205-506 7-322 (323)
173 KOG1188 WD40 repeat protein [G 99.5 3.4E-13 7.4E-18 143.7 17.5 268 225-545 41-345 (376)
174 KOG1240 Protein kinase contain 99.5 1.2E-12 2.6E-17 158.4 23.8 369 84-544 1030-1431(1431)
175 KOG0303 Actin-binding protein 99.5 1.1E-12 2.4E-17 141.9 19.6 236 207-535 76-326 (472)
176 KOG4378 Nuclear protein COP1 [ 99.5 8E-13 1.7E-17 146.0 19.0 254 234-547 12-281 (673)
177 KOG1007 WD repeat protein TSSC 99.5 2.3E-12 5.1E-17 134.2 21.2 303 173-546 38-361 (370)
178 KOG1587 Cytoplasmic dynein int 99.5 5.8E-12 1.3E-16 149.6 25.3 280 173-546 220-516 (555)
179 KOG4227 WD40 repeat protein [G 99.5 2.4E-12 5.2E-17 138.3 19.3 294 143-506 50-386 (609)
180 KOG1517 Guanine nucleotide bin 99.5 6.2E-12 1.3E-16 149.9 24.4 289 214-548 1066-1383(1387)
181 KOG1034 Transcriptional repres 99.5 1.7E-12 3.8E-17 137.6 17.7 254 167-506 105-382 (385)
182 KOG0644 Uncharacterized conser 99.4 2.7E-13 5.8E-18 157.7 11.1 273 98-507 188-468 (1113)
183 KOG4227 WD40 repeat protein [G 99.4 4.8E-12 1E-16 136.0 19.2 292 208-545 52-386 (609)
184 KOG0322 G-protein beta subunit 99.4 1.8E-12 4E-17 133.6 15.2 265 89-407 3-318 (323)
185 KOG0307 Vesicle coat complex C 99.4 8.9E-13 1.9E-17 159.8 14.8 221 117-407 82-322 (1049)
186 KOG0649 WD40 repeat protein [G 99.4 1.8E-11 4E-16 124.7 20.9 293 214-543 12-313 (325)
187 COG2319 FOG: WD40 repeat [Gene 99.4 6.1E-10 1.3E-14 129.7 36.8 324 144-550 60-404 (466)
188 KOG1334 WD40 repeat protein [G 99.4 5.9E-12 1.3E-16 139.6 18.2 301 143-547 136-467 (559)
189 KOG0644 Uncharacterized conser 99.4 4E-13 8.7E-18 156.3 9.0 237 208-552 186-432 (1113)
190 KOG1034 Transcriptional repres 99.4 4.7E-12 1E-16 134.3 15.9 280 165-546 53-383 (385)
191 KOG1007 WD repeat protein TSSC 99.4 2.3E-11 4.9E-16 127.0 20.4 288 124-467 39-360 (370)
192 KOG1188 WD40 repeat protein [G 99.4 1.4E-11 3.1E-16 131.5 17.9 144 116-292 41-197 (376)
193 KOG1517 Guanine nucleotide bin 99.4 3.1E-11 6.6E-16 144.2 21.8 279 168-508 1078-1382(1387)
194 KOG1310 WD40 repeat protein [G 99.4 3.9E-11 8.4E-16 134.4 20.7 128 142-292 43-179 (758)
195 KOG1009 Chromatin assembly com 99.4 3.7E-11 8.1E-16 131.0 19.7 319 109-470 19-374 (434)
196 KOG1445 Tumor-specific antigen 99.3 1.5E-11 3.4E-16 139.1 16.7 164 109-297 585-756 (1012)
197 KOG1524 WD40 repeat-containing 99.3 8.6E-11 1.9E-15 131.3 19.1 202 223-542 74-282 (737)
198 KOG1963 WD40 repeat protein [G 99.3 1.9E-09 4.2E-14 128.2 30.5 382 109-548 22-540 (792)
199 KOG1523 Actin-related protein 99.3 1.6E-10 3.4E-15 122.7 19.1 241 212-544 10-276 (361)
200 KOG1523 Actin-related protein 99.3 3.2E-10 7E-15 120.4 20.1 217 158-469 12-237 (361)
201 KOG1273 WD40 repeat protein [G 99.2 8.8E-11 1.9E-15 123.9 14.6 252 109-409 29-319 (405)
202 KOG4497 Uncharacterized conser 99.2 2.8E-10 6E-15 120.7 18.0 339 109-539 14-425 (447)
203 PRK11028 6-phosphogluconolacto 99.2 2.4E-09 5.1E-14 123.5 26.9 273 169-547 5-305 (330)
204 KOG0303 Actin-binding protein 99.2 5.3E-10 1.2E-14 121.4 19.7 153 113-293 42-205 (472)
205 KOG1524 WD40 repeat-containing 99.2 1.3E-09 2.9E-14 122.0 22.1 175 98-314 102-279 (737)
206 PRK01742 tolB translocation pr 99.2 6.6E-10 1.4E-14 132.6 21.6 231 174-527 183-424 (429)
207 KOG1587 Cytoplasmic dynein int 99.2 2.4E-09 5.2E-14 127.6 25.4 275 125-508 222-517 (555)
208 KOG0771 Prolactin regulatory e 99.2 1.8E-10 3.9E-15 126.8 14.3 203 214-508 146-355 (398)
209 PRK11028 6-phosphogluconolacto 99.2 7.2E-09 1.6E-13 119.5 27.9 282 118-507 5-304 (330)
210 KOG0290 Conserved WD40 repeat- 99.1 1.7E-09 3.7E-14 113.3 17.0 201 158-410 98-316 (364)
211 KOG2394 WD40 protein DMR-N9 [G 99.1 3.8E-09 8.3E-14 118.9 20.1 87 441-527 292-383 (636)
212 KOG1310 WD40 repeat protein [G 99.1 9.2E-10 2E-14 123.6 12.6 219 207-507 45-303 (758)
213 KOG1240 Protein kinase contain 99.1 5.9E-09 1.3E-13 127.2 20.2 256 210-508 1046-1335(1431)
214 KOG0290 Conserved WD40 repeat- 99.1 8.9E-10 1.9E-14 115.4 11.5 151 112-293 160-320 (364)
215 KOG1334 WD40 repeat protein [G 99.0 1.7E-09 3.7E-14 120.5 12.9 308 102-507 141-466 (559)
216 KOG2139 WD40 repeat protein [G 99.0 1.2E-07 2.7E-12 102.4 24.8 276 172-507 117-431 (445)
217 KOG0974 WD-repeat protein WDR6 99.0 7.1E-08 1.5E-12 116.9 24.1 146 109-292 139-289 (967)
218 PRK01742 tolB translocation pr 99.0 2E-08 4.4E-13 119.9 19.5 226 124-430 183-424 (429)
219 KOG1272 WD40-repeat-containing 98.9 1.6E-09 3.5E-14 120.0 7.8 226 211-544 129-360 (545)
220 PRK03629 tolB translocation pr 98.9 2.4E-07 5.3E-12 110.4 26.6 234 234-527 179-426 (429)
221 KOG0771 Prolactin regulatory e 98.9 5.1E-09 1.1E-13 115.5 10.9 165 107-291 148-354 (398)
222 KOG1409 Uncharacterized conser 98.9 8.9E-08 1.9E-12 102.9 19.8 325 143-547 18-395 (404)
223 PRK04922 tolB translocation pr 98.9 1.6E-07 3.5E-12 112.4 23.6 215 210-527 201-431 (433)
224 KOG2110 Uncharacterized conser 98.9 3.3E-07 7.1E-12 99.7 22.4 301 214-547 7-331 (391)
225 KOG2110 Uncharacterized conser 98.9 8.4E-07 1.8E-11 96.6 25.3 109 158-290 89-203 (391)
226 KOG2394 WD40 protein DMR-N9 [G 98.9 9.7E-08 2.1E-12 107.8 18.7 162 112-291 182-362 (636)
227 PRK02889 tolB translocation pr 98.8 3.1E-07 6.6E-12 109.6 24.1 217 210-527 193-423 (427)
228 KOG2321 WD40 repeat protein [G 98.8 1E-07 2.2E-12 108.4 18.4 270 259-554 48-351 (703)
229 KOG2111 Uncharacterized conser 98.8 1.5E-06 3.3E-11 93.0 26.2 74 435-508 177-257 (346)
230 PRK05137 tolB translocation pr 98.8 7E-07 1.5E-11 107.0 25.2 201 210-514 199-419 (435)
231 PF03372 Exo_endo_phos: Endonu 98.8 1.1E-08 2.3E-13 111.7 7.9 63 662-726 72-137 (249)
232 KOG0974 WD-repeat protein WDR6 98.8 6.2E-07 1.3E-11 109.0 23.2 193 268-509 93-290 (967)
233 KOG1354 Serine/threonine prote 98.8 3.6E-07 7.9E-12 98.2 18.7 270 214-507 27-359 (433)
234 KOG2315 Predicted translation 98.8 7E-06 1.5E-10 94.0 29.5 323 158-547 36-391 (566)
235 PRK05421 hypothetical protein; 98.8 2E-07 4.3E-12 103.5 17.0 44 696-739 134-178 (263)
236 KOG2041 WD40 repeat protein [G 98.7 5.4E-07 1.2E-11 104.3 19.8 292 214-547 16-338 (1189)
237 KOG4497 Uncharacterized conser 98.7 4E-07 8.6E-12 97.2 17.3 322 218-612 14-432 (447)
238 PRK11756 exonuclease III; Prov 98.7 9.4E-08 2E-12 106.7 13.0 127 575-738 2-135 (268)
239 KOG2111 Uncharacterized conser 98.7 4.6E-06 9.9E-11 89.4 24.2 175 125-409 75-253 (346)
240 PRK03629 tolB translocation pr 98.7 1.7E-06 3.6E-11 103.3 23.7 203 126-405 180-396 (429)
241 KOG3881 Uncharacterized conser 98.7 1E-06 2.2E-11 96.7 19.6 214 212-472 105-325 (412)
242 TIGR03395 sphingomy sphingomye 98.7 2.5E-07 5.4E-12 103.4 15.4 76 661-739 88-169 (283)
243 KOG2139 WD40 repeat protein [G 98.7 5.8E-06 1.3E-10 89.7 24.9 160 107-292 102-269 (445)
244 KOG2321 WD40 repeat protein [G 98.7 8.4E-07 1.8E-11 101.1 18.2 250 109-407 57-338 (703)
245 TIGR02800 propeller_TolB tol-p 98.6 4.5E-06 9.7E-11 99.6 24.3 213 211-526 188-416 (417)
246 PF08662 eIF2A: Eukaryotic tra 98.6 1.1E-06 2.5E-11 92.6 16.7 105 158-292 61-180 (194)
247 KOG2315 Predicted translation 98.6 6.8E-06 1.5E-10 94.1 23.5 318 108-512 39-395 (566)
248 KOG3881 Uncharacterized conser 98.6 2.9E-06 6.3E-11 93.1 19.3 245 214-508 57-321 (412)
249 PF08662 eIF2A: Eukaryotic tra 98.6 1.2E-06 2.6E-11 92.5 15.9 106 439-546 59-179 (194)
250 KOG1409 Uncharacterized conser 98.6 1.5E-06 3.2E-11 93.8 15.6 234 253-546 15-270 (404)
251 TIGR00633 xth exodeoxyribonucl 98.6 4.7E-07 1E-11 100.2 12.6 36 575-614 2-38 (255)
252 PF02239 Cytochrom_D1: Cytochr 98.5 1.3E-05 2.8E-10 93.2 24.1 309 172-547 13-348 (369)
253 PRK02889 tolB translocation pr 98.5 3.7E-06 7.9E-11 100.4 20.1 204 126-404 177-392 (427)
254 PRK04922 tolB translocation pr 98.5 7.2E-06 1.6E-10 98.2 22.3 195 125-387 184-392 (433)
255 KOG4547 WD40 repeat-containing 98.5 1.9E-06 4.1E-11 99.3 15.9 112 436-549 99-223 (541)
256 PRK05137 tolB translocation pr 98.5 9.3E-06 2E-10 97.4 22.5 194 126-387 183-390 (435)
257 PF02239 Cytochrom_D1: Cytochr 98.5 2.6E-05 5.7E-10 90.7 25.4 294 109-476 42-356 (369)
258 KOG0309 Conserved WD40 repeat- 98.5 7.6E-07 1.7E-11 103.7 12.0 276 158-547 26-340 (1081)
259 KOG1272 WD40-repeat-containing 98.5 1.2E-07 2.7E-12 105.3 5.2 162 377-547 133-324 (545)
260 COG5354 Uncharacterized protei 98.5 8.5E-05 1.8E-09 84.4 27.3 293 158-510 34-398 (561)
261 PRK04792 tolB translocation pr 98.4 2.8E-05 6E-10 93.3 24.5 84 444-527 354-445 (448)
262 PRK00178 tolB translocation pr 98.4 3.5E-05 7.7E-10 92.3 25.4 215 210-527 196-426 (430)
263 KOG4190 Uncharacterized conser 98.4 9.7E-07 2.1E-11 99.3 9.8 281 209-542 732-1032(1034)
264 KOG1064 RAVE (regulator of V-A 98.4 2E-06 4.4E-11 108.9 13.1 246 223-539 2179-2439(2439)
265 KOG3914 WD repeat protein WDR4 98.3 5.3E-06 1.1E-10 91.7 13.6 155 109-293 68-225 (390)
266 TIGR03300 assembly_YfgL outer 98.3 9.6E-05 2.1E-09 86.9 25.6 298 166-543 65-376 (377)
267 KOG1354 Serine/threonine prote 98.3 1.1E-05 2.5E-10 86.9 15.5 268 109-409 31-356 (433)
268 KOG2041 WD40 repeat protein [G 98.3 0.00018 3.8E-09 84.1 25.7 153 109-292 20-187 (1189)
269 PF10282 Lactonase: Lactonase, 98.3 0.00068 1.5E-08 78.6 31.4 255 214-507 38-322 (345)
270 KOG1064 RAVE (regulator of V-A 98.2 4.7E-06 1E-10 105.7 11.1 220 107-405 2212-2439(2439)
271 COG4946 Uncharacterized protei 98.2 0.0005 1.1E-08 77.3 25.5 186 164-406 275-467 (668)
272 KOG4547 WD40 repeat-containing 98.2 1.1E-05 2.3E-10 93.3 12.9 126 223-384 69-195 (541)
273 TIGR02800 propeller_TolB tol-p 98.2 9.5E-05 2.1E-09 88.2 21.0 145 108-292 194-355 (417)
274 PRK13911 exodeoxyribonuclease 98.1 3.3E-05 7.1E-10 84.8 14.7 36 575-614 2-38 (250)
275 TIGR00195 exoDNase_III exodeox 98.1 1.6E-05 3.5E-10 88.0 12.1 36 575-614 2-37 (254)
276 PRK01029 tolB translocation pr 98.1 0.0005 1.1E-08 82.0 25.4 153 354-527 258-423 (428)
277 KOG2314 Translation initiation 98.1 0.0014 3.1E-08 75.2 26.3 296 216-546 214-573 (698)
278 COG5170 CDC55 Serine/threonine 98.1 5.4E-05 1.2E-09 80.6 13.8 277 212-506 26-366 (460)
279 PRK00178 tolB translocation pr 98.1 0.00031 6.7E-09 84.2 22.5 127 127-292 181-320 (430)
280 COG3568 ElsH Metal-dependent h 98.1 0.00011 2.4E-09 79.1 16.3 55 677-738 101-158 (259)
281 PRK04792 tolB translocation pr 98.1 0.00029 6.2E-09 84.7 21.9 96 158-280 219-324 (448)
282 KOG0309 Conserved WD40 repeat- 98.0 6.3E-05 1.4E-09 88.2 14.1 154 109-293 30-190 (1081)
283 PF15492 Nbas_N: Neuroblastoma 98.0 0.0019 4.1E-08 69.4 24.1 70 162-243 3-74 (282)
284 KOG4714 Nucleoporin [Nuclear s 98.0 7.1E-05 1.5E-09 78.3 12.7 177 253-473 80-259 (319)
285 KOG0280 Uncharacterized conser 98.0 0.00043 9.2E-09 73.9 18.3 110 436-546 162-284 (339)
286 PF04762 IKI3: IKI3 family; I 98.0 0.0022 4.9E-08 82.8 28.6 309 212-548 75-458 (928)
287 PF00400 WD40: WD domain, G-be 98.0 1.1E-05 2.5E-10 60.9 4.8 37 253-289 2-39 (39)
288 TIGR03300 assembly_YfgL outer 97.9 0.0011 2.4E-08 78.0 23.6 267 223-548 64-340 (377)
289 KOG4190 Uncharacterized conser 97.9 1.2E-05 2.6E-10 90.8 6.3 93 452-544 843-946 (1034)
290 TIGR02658 TTQ_MADH_Hv methylam 97.9 0.0061 1.3E-07 69.8 27.7 258 234-550 27-334 (352)
291 COG2706 3-carboxymuconate cycl 97.9 0.012 2.5E-07 65.3 28.4 284 174-508 15-322 (346)
292 KOG4532 WD40-like repeat conta 97.9 0.00073 1.6E-08 71.2 18.2 142 116-292 85-234 (344)
293 smart00476 DNaseIc deoxyribonu 97.9 0.0006 1.3E-08 75.4 17.9 128 573-721 17-154 (276)
294 KOG0280 Uncharacterized conser 97.9 0.0011 2.3E-08 70.9 18.6 180 211-430 68-262 (339)
295 PF14874 PapD-like: Flagellar- 97.8 0.00024 5.2E-09 66.7 12.6 91 958-1090 10-100 (102)
296 PLN02919 haloacid dehalogenase 97.8 0.0045 9.8E-08 81.5 28.4 262 216-508 571-889 (1057)
297 PRK01029 tolB translocation pr 97.8 0.0017 3.7E-08 77.5 22.5 155 108-293 189-361 (428)
298 PF04762 IKI3: IKI3 family; I 97.8 0.018 3.8E-07 74.7 32.5 318 107-509 213-566 (928)
299 COG5354 Uncharacterized protei 97.8 0.004 8.7E-08 71.2 22.9 110 437-548 272-397 (561)
300 COG2706 3-carboxymuconate cycl 97.8 0.037 8.1E-07 61.4 29.3 266 124-467 15-320 (346)
301 KOG1912 WD40 repeat protein [G 97.7 0.0022 4.8E-08 76.2 20.6 337 163-536 22-486 (1062)
302 PF10282 Lactonase: Lactonase, 97.7 0.035 7.7E-07 64.4 31.0 268 227-546 2-322 (345)
303 PF00400 WD40: WD domain, G-be 97.7 8.6E-05 1.9E-09 56.0 6.0 34 207-240 6-39 (39)
304 COG5170 CDC55 Serine/threonine 97.7 0.00021 4.6E-09 76.2 10.9 178 109-292 32-253 (460)
305 PF08450 SGL: SMP-30/Gluconola 97.7 0.031 6.8E-07 61.4 28.4 88 440-527 134-233 (246)
306 PLN02919 haloacid dehalogenase 97.7 0.0084 1.8E-07 79.0 27.5 254 266-548 571-890 (1057)
307 KOG0882 Cyclophilin-related pe 97.7 0.0004 8.6E-09 77.8 12.7 216 211-475 8-239 (558)
308 KOG1912 WD40 repeat protein [G 97.7 0.0017 3.8E-08 77.1 18.4 96 452-547 439-552 (1062)
309 COG0708 XthA Exonuclease III [ 97.6 0.00018 3.9E-09 77.7 9.3 110 575-723 2-113 (261)
310 KOG3914 WD repeat protein WDR4 97.6 0.00035 7.6E-09 77.6 11.5 104 229-372 127-234 (390)
311 KOG2314 Translation initiation 97.6 0.018 3.9E-07 66.5 25.0 296 162-512 216-578 (698)
312 TIGR02658 TTQ_MADH_Hv methylam 97.6 0.069 1.5E-06 61.3 29.6 73 441-514 249-338 (352)
313 PRK11138 outer membrane biogen 97.6 0.018 4E-07 68.1 26.1 96 450-545 294-393 (394)
314 PRK04043 tolB translocation pr 97.5 0.014 3.1E-07 69.3 24.3 76 446-521 325-414 (419)
315 KOG4714 Nucleoporin [Nuclear s 97.5 0.00026 5.6E-09 74.2 8.3 72 214-292 181-255 (319)
316 PLN03144 Carbon catabolite rep 97.5 0.0014 3E-08 79.6 15.6 64 710-813 418-481 (606)
317 KOG0882 Cyclophilin-related pe 97.5 0.0018 3.8E-08 72.8 14.7 148 113-292 18-175 (558)
318 KOG2114 Vacuolar assembly/sort 97.5 0.0047 1E-07 74.7 19.3 214 220-520 31-258 (933)
319 KOG2695 WD40 repeat protein [G 97.5 0.00011 2.4E-09 79.6 5.2 111 439-550 252-380 (425)
320 COG4946 Uncharacterized protei 97.5 0.11 2.4E-06 59.1 28.0 151 111-293 274-433 (668)
321 KOG4532 WD40-like repeat conta 97.5 0.0042 9E-08 65.7 15.9 148 118-293 131-284 (344)
322 PF07433 DUF1513: Protein of u 97.5 0.034 7.3E-07 61.7 23.9 245 217-504 9-282 (305)
323 PF15492 Nbas_N: Neuroblastoma 97.4 0.0077 1.7E-07 64.8 17.8 171 107-293 47-261 (282)
324 PTZ00297 pantothenate kinase; 97.4 0.0065 1.4E-07 81.5 20.1 43 694-737 130-177 (1452)
325 KOG2066 Vacuolar assembly/sort 97.3 0.0067 1.4E-07 73.1 16.7 174 214-507 41-233 (846)
326 KOG1645 RING-finger-containing 97.0 0.021 4.6E-07 63.8 16.4 75 210-293 191-268 (463)
327 PRK11138 outer membrane biogen 97.0 0.48 1E-05 56.1 29.2 57 450-506 335-393 (394)
328 KOG2114 Vacuolar assembly/sort 96.8 0.062 1.4E-06 65.5 19.3 156 110-292 30-202 (933)
329 PF13360 PQQ_2: PQQ-like domai 96.7 0.45 9.8E-06 51.5 24.4 176 350-549 43-233 (238)
330 PF08450 SGL: SMP-30/Gluconola 96.7 0.22 4.8E-06 54.6 21.9 218 110-386 6-238 (246)
331 KOG3873 Sphingomyelinase famil 96.7 0.0042 9E-08 68.4 7.8 222 642-923 58-296 (422)
332 KOG4649 PQQ (pyrrolo-quinoline 96.7 0.66 1.4E-05 49.5 23.3 99 115-243 23-124 (354)
333 KOG2695 WD40 repeat protein [G 96.7 0.0049 1.1E-07 67.3 7.8 130 211-372 251-387 (425)
334 PF11768 DUF3312: Protein of u 96.7 0.0047 1E-07 72.5 8.3 73 210-292 257-330 (545)
335 PF13360 PQQ_2: PQQ-like domai 96.4 0.27 5.8E-06 53.4 20.1 187 272-508 35-231 (238)
336 KOG3617 WD40 and TPR repeat-co 96.4 0.063 1.4E-06 64.9 15.1 68 215-291 62-131 (1416)
337 KOG3621 WD40 repeat-containing 96.3 0.22 4.7E-06 59.9 19.0 110 164-292 42-155 (726)
338 PF11768 DUF3312: Protein of u 96.3 0.1 2.3E-06 61.6 16.4 73 437-509 257-331 (545)
339 KOG3617 WD40 and TPR repeat-co 96.3 0.11 2.4E-06 62.9 16.6 68 159-243 62-132 (1416)
340 PF00635 Motile_Sperm: MSP (Ma 96.2 0.027 5.9E-07 53.3 9.3 63 958-1042 3-70 (109)
341 KOG3621 WD40 repeat-containing 96.2 0.95 2.1E-05 54.6 23.5 68 215-291 36-106 (726)
342 KOG2444 WD40 repeat protein [G 96.1 0.007 1.5E-07 63.2 5.1 96 452-547 72-178 (238)
343 KOG1275 PAB-dependent poly(A) 96.1 0.083 1.8E-06 64.7 14.4 141 222-412 185-342 (1118)
344 smart00320 WD40 WD40 repeats. 95.9 0.01 2.2E-07 42.7 3.9 37 253-289 3-40 (40)
345 PRK04043 tolB translocation pr 95.8 0.7 1.5E-05 55.0 20.8 105 161-292 192-310 (419)
346 KOG1832 HIV-1 Vpr-binding prot 95.8 0.0087 1.9E-07 72.2 4.5 195 252-508 1091-1292(1516)
347 KOG1920 IkappaB kinase complex 95.7 0.21 4.5E-06 63.4 15.9 106 442-547 198-323 (1265)
348 KOG2066 Vacuolar assembly/sort 95.7 0.16 3.6E-06 61.6 14.3 145 167-377 49-203 (846)
349 KOG1920 IkappaB kinase complex 95.6 1.2 2.5E-05 57.0 21.9 67 213-288 69-136 (1265)
350 KOG4649 PQQ (pyrrolo-quinoline 95.5 4.3 9.3E-05 43.6 23.1 62 114-185 62-125 (354)
351 KOG1275 PAB-dependent poly(A) 95.4 0.11 2.4E-06 63.6 11.7 145 112-289 184-340 (1118)
352 smart00320 WD40 WD40 repeats. 95.3 0.033 7.1E-07 39.8 4.8 33 208-240 8-40 (40)
353 PF14727 PHTB1_N: PTHB1 N-term 95.2 8.7 0.00019 45.4 28.6 85 459-547 261-361 (418)
354 PF04841 Vps16_N: Vps16, N-ter 95.2 6.1 0.00013 46.9 25.8 50 235-293 62-111 (410)
355 KOG1645 RING-finger-containing 94.9 0.6 1.3E-05 52.6 14.8 85 252-364 183-269 (463)
356 KOG2756 Predicted Mg2+-depende 94.8 0.12 2.6E-06 54.9 8.7 39 702-740 197-235 (349)
357 KOG1897 Damage-specific DNA bi 94.8 17 0.00036 46.2 34.0 101 442-544 777-896 (1096)
358 PF08553 VID27: VID27 cytoplas 94.8 0.41 8.8E-06 60.2 14.6 139 351-506 502-646 (794)
359 PF00930 DPPIV_N: Dipeptidyl p 94.7 11 0.00024 43.8 27.6 62 221-292 1-72 (353)
360 PRK02888 nitrous-oxide reducta 94.5 3.1 6.7E-05 50.8 20.7 130 352-496 295-450 (635)
361 PF04053 Coatomer_WDAD: Coatom 94.3 2.7 5.8E-05 50.2 19.6 133 214-406 34-168 (443)
362 PF14783 BBS2_Mid: Ciliary BBS 94.2 1.2 2.6E-05 41.9 12.9 89 447-540 10-108 (111)
363 KOG2338 Transcriptional effect 94.1 0.12 2.5E-06 60.2 7.2 75 666-740 204-283 (495)
364 KOG2395 Protein involved in va 94.0 0.99 2.1E-05 52.8 14.3 144 350-507 353-500 (644)
365 KOG4640 Anaphase-promoting com 93.8 0.15 3.2E-06 60.5 7.5 72 213-293 21-94 (665)
366 COG3386 Gluconolactonase [Carb 93.8 11 0.00023 42.9 22.1 119 362-497 151-275 (307)
367 KOG4640 Anaphase-promoting com 93.5 0.23 5E-06 58.9 8.4 87 441-527 22-114 (665)
368 KOG2079 Vacuolar assembly/sort 93.3 0.14 3.1E-06 64.0 6.6 95 452-548 101-205 (1206)
369 PF07433 DUF1513: Protein of u 93.3 14 0.00031 41.3 21.5 172 350-537 74-277 (305)
370 cd00216 PQQ_DH Dehydrogenases 92.9 28 0.00062 42.4 26.1 94 452-550 303-428 (488)
371 PF00780 CNH: CNH domain; Int 92.8 19 0.0004 40.0 23.8 59 223-292 6-65 (275)
372 PF14783 BBS2_Mid: Ciliary BBS 92.6 1.8 4E-05 40.7 11.4 88 167-286 16-109 (111)
373 COG3386 Gluconolactonase [Carb 92.6 15 0.00033 41.7 21.0 99 439-537 162-276 (307)
374 PRK02888 nitrous-oxide reducta 92.6 10 0.00022 46.5 20.5 70 439-508 320-405 (635)
375 PRK15251 cytolethal distending 92.5 1.3 2.7E-05 48.8 11.8 38 695-738 140-177 (271)
376 KOG1832 HIV-1 Vpr-binding prot 92.5 0.17 3.7E-06 61.6 5.5 164 210-387 1099-1280(1516)
377 PF00930 DPPIV_N: Dipeptidyl p 92.3 11 0.00024 43.8 20.4 114 112-241 1-130 (353)
378 PF04841 Vps16_N: Vps16, N-ter 92.0 24 0.00052 42.0 23.0 30 213-243 81-110 (410)
379 PF06433 Me-amine-dh_H: Methyl 91.9 18 0.0004 41.1 20.3 257 234-550 17-324 (342)
380 PF08596 Lgl_C: Lethal giant l 91.7 20 0.00044 42.2 21.4 80 214-293 3-117 (395)
381 KOG1008 Uncharacterized conser 91.6 0.11 2.5E-06 61.3 2.7 149 112-290 67-224 (783)
382 PF12894 Apc4_WD40: Anaphase-p 91.4 0.48 1E-05 37.4 5.2 32 212-243 11-42 (47)
383 cd00216 PQQ_DH Dehydrogenases 91.4 42 0.0009 41.0 28.7 27 451-477 407-434 (488)
384 KOG1008 Uncharacterized conser 90.8 0.19 4.1E-06 59.6 3.5 267 212-536 56-362 (783)
385 PRK13616 lipoprotein LpqB; Pro 90.8 10 0.00022 47.2 18.6 60 214-282 351-417 (591)
386 PF06433 Me-amine-dh_H: Methyl 90.6 20 0.00043 40.9 18.8 237 109-373 41-332 (342)
387 KOG2079 Vacuolar assembly/sort 88.8 1.1 2.4E-05 56.5 7.9 93 172-290 106-202 (1206)
388 KOG1916 Nuclear protein, conta 87.9 0.29 6.3E-06 60.1 2.2 176 353-544 153-372 (1283)
389 PF06977 SdiA-regulated: SdiA- 87.8 44 0.00096 36.7 18.8 69 213-291 22-94 (248)
390 PF04053 Coatomer_WDAD: Coatom 87.4 12 0.00027 44.7 15.5 57 167-243 117-174 (443)
391 PF14870 PSII_BNR: Photosynthe 87.0 8.8 0.00019 43.3 13.2 150 109-288 150-301 (302)
392 COG0823 TolB Periplasmic compo 86.9 39 0.00085 40.3 19.2 68 212-288 192-265 (425)
393 PF12894 Apc4_WD40: Anaphase-p 86.7 1.8 3.9E-05 34.2 5.3 33 440-472 12-45 (47)
394 COG3490 Uncharacterized protei 86.7 55 0.0012 36.1 20.7 54 219-279 120-179 (366)
395 PF08553 VID27: VID27 cytoplas 86.4 12 0.00025 47.7 14.9 143 115-290 493-646 (794)
396 KOG2444 WD40 repeat protein [G 86.3 1.7 3.7E-05 45.9 6.5 104 165-292 69-178 (238)
397 PF14583 Pectate_lyase22: Olig 86.3 73 0.0016 37.1 23.0 65 220-293 43-112 (386)
398 KOG1916 Nuclear protein, conta 85.5 1.1 2.4E-05 55.2 5.3 100 446-545 190-322 (1283)
399 PF03178 CPSF_A: CPSF A subuni 85.5 28 0.00061 39.7 16.9 108 438-547 87-203 (321)
400 PF14655 RAB3GAP2_N: Rab3 GTPa 85.5 86 0.0019 37.1 23.8 43 435-477 303-347 (415)
401 KOG2395 Protein involved in va 84.4 18 0.00038 42.9 13.9 90 454-544 398-498 (644)
402 COG0823 TolB Periplasmic compo 83.7 8.3 0.00018 45.9 11.6 93 443-536 241-345 (425)
403 PF14727 PHTB1_N: PTHB1 N-term 81.7 1.2E+02 0.0026 36.0 26.6 156 114-292 36-205 (418)
404 PF10168 Nup88: Nuclear pore c 81.0 1.7E+02 0.0036 37.5 22.1 90 262-362 84-180 (717)
405 PF08596 Lgl_C: Lethal giant l 80.7 14 0.00031 43.5 11.9 73 435-507 82-173 (395)
406 PF14529 Exo_endo_phos_2: Endo 80.4 1.5 3.3E-05 41.7 3.2 13 785-797 32-44 (119)
407 PF03178 CPSF_A: CPSF A subuni 80.3 8.4 0.00018 44.1 9.8 110 158-291 90-202 (321)
408 PF00780 CNH: CNH domain; Int 79.9 1E+02 0.0022 34.0 24.3 155 113-292 5-166 (275)
409 COG3292 Predicted periplasmic 77.4 1.8E+02 0.0038 35.4 20.9 330 111-502 172-527 (671)
410 KOG0439 VAMP-associated protei 77.2 5.1 0.00011 43.1 6.5 48 969-1038 26-73 (218)
411 TIGR03075 PQQ_enz_alc_DH PQQ-d 75.8 2.1E+02 0.0045 35.3 28.5 57 460-516 441-500 (527)
412 PF06280 DUF1034: Fn3-like dom 75.1 4.8 0.0001 38.3 4.9 69 967-1041 7-80 (112)
413 PF15390 DUF4613: Domain of un 74.4 1.1E+02 0.0024 37.3 16.3 140 213-387 20-169 (671)
414 KOG2280 Vacuolar assembly/sort 72.7 2.6E+02 0.0057 35.1 19.5 71 211-292 42-113 (829)
415 PLN00033 photosystem II stabil 71.9 1.1E+02 0.0024 36.1 16.1 146 111-288 246-396 (398)
416 KOG4499 Ca2+-binding protein R 70.4 52 0.0011 35.2 11.2 102 265-383 160-263 (310)
417 COG3490 Uncharacterized protei 69.0 92 0.002 34.4 13.0 62 109-180 119-186 (366)
418 PF07610 DUF1573: Protein of u 67.1 26 0.00057 27.3 6.5 21 1018-1038 24-44 (45)
419 PF12234 Rav1p_C: RAVE protein 67.0 95 0.0021 38.7 14.5 110 342-467 40-155 (631)
420 PF08728 CRT10: CRT10; InterP 66.3 67 0.0015 40.4 13.1 127 158-290 102-245 (717)
421 PF14655 RAB3GAP2_N: Rab3 GTPa 65.4 25 0.00054 41.6 8.9 84 444-527 6-117 (415)
422 COG5167 VID27 Protein involved 65.4 60 0.0013 38.4 11.5 140 351-507 488-632 (776)
423 PF10313 DUF2415: Uncharacteri 65.1 17 0.00037 28.1 4.8 31 213-243 1-34 (43)
424 KOG1900 Nuclear pore complex, 64.5 41 0.0009 44.3 11.0 179 345-549 91-275 (1311)
425 KOG1897 Damage-specific DNA bi 63.7 4.4E+02 0.0095 34.3 32.8 152 339-511 495-663 (1096)
426 PF06977 SdiA-regulated: SdiA- 63.6 2.3E+02 0.0051 31.1 18.3 118 158-292 23-148 (248)
427 PRK13205 ureB urease subunit b 62.7 27 0.00059 34.3 6.9 94 957-1074 6-111 (162)
428 PF07569 Hira: TUP1-like enhan 62.4 51 0.0011 35.5 10.0 69 220-291 18-95 (219)
429 PF12234 Rav1p_C: RAVE protein 62.2 73 0.0016 39.7 12.3 110 164-290 38-155 (631)
430 PRK13684 Ycf48-like protein; P 61.6 2.7E+02 0.0058 32.1 16.5 151 109-290 178-330 (334)
431 PF05694 SBP56: 56kDa selenium 60.8 1.5E+02 0.0032 35.1 13.7 107 352-469 221-343 (461)
432 PF10168 Nup88: Nuclear pore c 60.0 1.1E+02 0.0025 39.0 13.8 125 335-468 34-179 (717)
433 PF11725 AvrE: Pathogenicity f 59.0 6.7E+02 0.014 34.9 20.8 125 439-563 702-850 (1774)
434 PF00345 PapD_N: Pili and flag 58.2 73 0.0016 30.6 9.5 67 958-1037 3-70 (122)
435 PF07569 Hira: TUP1-like enhan 57.7 43 0.00093 36.1 8.4 76 158-243 14-96 (219)
436 PF14583 Pectate_lyase22: Olig 57.5 3.7E+02 0.0081 31.5 17.9 71 438-508 186-273 (386)
437 PRK13202 ureB urease subunit b 57.1 26 0.00057 32.3 5.5 70 957-1038 6-83 (104)
438 PF02897 Peptidase_S9_N: Proly 53.4 4.4E+02 0.0095 31.1 19.6 110 159-292 126-261 (414)
439 PF14870 PSII_BNR: Photosynthe 50.8 2.6E+02 0.0057 31.7 13.5 100 440-541 145-256 (302)
440 PRK13616 lipoprotein LpqB; Pro 50.8 83 0.0018 39.3 10.5 97 441-542 351-472 (591)
441 PF10313 DUF2415: Uncharacteri 50.3 35 0.00076 26.4 4.4 30 263-292 1-34 (43)
442 PF02897 Peptidase_S9_N: Proly 49.9 4.9E+02 0.011 30.6 28.3 71 442-512 329-409 (414)
443 TIGR03118 PEPCTERM_chp_1 conse 48.9 4.4E+02 0.0096 29.8 19.2 75 452-527 214-306 (336)
444 KOG2247 WD40 repeat-containing 47.8 4 8.8E-05 47.5 -1.4 139 112-288 43-185 (615)
445 PF10647 Gmad1: Lipoprotein Lp 47.8 4.1E+02 0.009 29.1 19.1 72 214-285 113-190 (253)
446 cd00407 Urease_beta Urease bet 47.6 55 0.0012 30.2 5.9 69 957-1038 6-82 (101)
447 TIGR00192 urease_beta urease, 46.5 51 0.0011 30.4 5.6 70 957-1038 6-82 (101)
448 KOG4460 Nuclear pore complex, 45.6 2.2E+02 0.0047 34.2 11.7 124 337-469 55-199 (741)
449 PRK13203 ureB urease subunit b 45.5 50 0.0011 30.5 5.4 70 957-1038 6-82 (102)
450 PHA02713 hypothetical protein; 45.1 3.3E+02 0.0071 33.9 14.5 78 461-538 433-523 (557)
451 KOG3630 Nuclear pore complex, 43.9 48 0.001 43.0 6.7 71 214-292 157-229 (1405)
452 COG0832 UreB Urea amidohydrola 43.3 96 0.0021 28.5 6.7 71 956-1038 5-82 (106)
453 PF14781 BBS2_N: Ciliary BBSom 42.0 2.9E+02 0.0063 27.2 10.3 91 452-544 12-123 (136)
454 PRK13198 ureB urease subunit b 41.4 71 0.0015 31.7 6.0 71 956-1038 33-110 (158)
455 PF12657 TFIIIC_delta: Transcr 41.0 1.2E+02 0.0026 31.2 8.4 28 264-291 87-121 (173)
456 KOG2377 Uncharacterized conser 40.6 2.3E+02 0.005 33.4 10.8 108 165-291 33-140 (657)
457 KOG4499 Ca2+-binding protein R 40.2 2E+02 0.0044 31.0 9.6 94 444-537 162-276 (310)
458 KOG1983 Tomosyn and related SN 40.1 4.7E+02 0.01 35.0 15.3 30 214-243 37-66 (993)
459 KOG3630 Nuclear pore complex, 39.5 2.5E+02 0.0054 36.9 11.8 93 442-535 158-262 (1405)
460 KOG4659 Uncharacterized conser 39.5 1.1E+03 0.025 31.9 22.2 26 159-184 409-436 (1899)
461 COG3292 Predicted periplasmic 39.1 4.5E+02 0.0099 32.1 13.2 153 262-468 164-318 (671)
462 KOG4441 Proteins containing BT 38.4 4.2E+02 0.0091 33.1 13.9 89 450-538 380-486 (571)
463 TIGR02604 Piru_Ver_Nterm putat 37.5 6.4E+02 0.014 29.3 14.8 19 213-231 124-142 (367)
464 KOG3870 Uncharacterized conser 36.7 14 0.00031 42.2 0.7 53 779-850 348-400 (434)
465 PF13570 PQQ_3: PQQ-like domai 36.5 96 0.0021 23.1 5.1 23 485-507 17-39 (40)
466 KOG3616 Selective LIM binding 36.5 3.3E+02 0.0072 33.9 11.7 31 262-292 14-45 (1636)
467 PRK13204 ureB urease subunit b 36.4 81 0.0017 31.3 5.6 71 956-1038 28-105 (159)
468 KOG3616 Selective LIM binding 36.4 5.4E+02 0.012 32.2 13.4 68 215-292 17-84 (1636)
469 KOG4441 Proteins containing BT 36.4 4.4E+02 0.0096 32.8 13.7 92 450-541 427-536 (571)
470 PRK13201 ureB urease subunit b 36.0 87 0.0019 30.3 5.6 70 957-1038 6-82 (136)
471 COG3021 Uncharacterized protei 35.9 21 0.00045 40.0 1.8 44 695-739 173-218 (309)
472 PF08728 CRT10: CRT10; InterP 35.8 2.2E+02 0.0047 36.1 10.6 115 114-242 113-246 (717)
473 PLN00033 photosystem II stabil 34.8 4.3E+02 0.0093 31.3 12.6 103 440-543 281-396 (398)
474 PF14646 MYCBPAP: MYCBP-associ 33.9 1.3E+02 0.0029 35.9 8.4 72 958-1039 238-309 (426)
475 COG3391 Uncharacterized conser 32.2 8.8E+02 0.019 28.4 19.8 141 345-511 88-243 (381)
476 COG3391 Uncharacterized conser 31.6 9E+02 0.019 28.3 23.5 137 351-508 138-284 (381)
477 PF08801 Nucleoporin_N: Nup133 31.5 3.2E+02 0.007 32.5 11.2 29 519-547 190-220 (422)
478 COG5066 SCS2 VAMP-associated p 30.8 1.3E+02 0.0028 31.6 6.3 50 968-1039 17-66 (242)
479 PF07995 GSDH: Glucose / Sorbo 30.1 8.8E+02 0.019 27.7 16.7 31 441-471 3-33 (331)
480 TIGR03079 CH4_NH3mon_ox_B meth 29.6 99 0.0021 35.3 5.7 24 1017-1041 331-354 (399)
481 KOG2247 WD40 repeat-containing 29.3 12 0.00026 43.8 -1.4 132 445-583 80-218 (615)
482 PF12657 TFIIIC_delta: Transcr 28.9 3.6E+02 0.0078 27.6 9.6 31 213-243 86-122 (173)
483 COG5276 Uncharacterized conser 28.6 5.9E+02 0.013 28.6 11.0 103 445-548 92-201 (370)
484 PF00699 Urease_beta: Urease b 27.3 1.7E+02 0.0038 27.0 5.8 68 957-1038 5-81 (100)
485 KOG1896 mRNA cleavage and poly 27.3 3E+02 0.0065 36.5 9.8 152 115-291 1046-1213(1366)
486 PF04744 Monooxygenase_B: Mono 26.9 1.7E+02 0.0038 33.5 7.0 24 1017-1041 312-335 (381)
487 KOG2280 Vacuolar assembly/sort 26.4 1.9E+02 0.0041 36.3 7.7 83 458-541 62-150 (829)
488 PF11715 Nup160: Nucleoporin N 25.4 1.6E+02 0.0035 36.4 7.4 71 222-293 156-250 (547)
489 TIGR03096 nitroso_cyanin nitro 24.7 2.3E+02 0.005 28.0 6.6 15 1024-1038 93-107 (135)
490 KOG1900 Nuclear pore complex, 24.0 6E+02 0.013 34.2 11.8 32 437-468 240-272 (1311)
491 PRK13192 bifunctional urease s 23.7 1.3E+02 0.0029 31.4 4.9 70 957-1038 115-191 (208)
492 KOG3522 Predicted guanine nucl 23.2 6.8E+02 0.015 32.1 11.5 71 158-243 628-698 (925)
493 smart00183 NAT_PEP Natriuretic 22.8 39 0.00085 22.7 0.7 16 1088-1103 6-21 (26)
494 PRK13986 urease subunit alpha; 22.7 1.3E+02 0.0029 31.8 4.8 70 957-1038 111-187 (225)
495 PF05345 He_PIG: Putative Ig d 22.6 1.6E+02 0.0035 23.4 4.3 16 1012-1027 10-25 (49)
496 PF06030 DUF916: Bacterial pro 22.5 2.6E+02 0.0057 27.0 6.6 68 968-1039 27-101 (121)
497 PF07676 PD40: WD40-like Beta 22.5 2E+02 0.0044 21.0 4.7 28 261-288 7-38 (39)
498 PF14761 HPS3_N: Hermansky-Pud 22.4 1.8E+02 0.0039 31.1 5.8 49 485-534 23-77 (215)
499 PF12768 Rax2: Cortical protei 22.3 7.2E+02 0.016 27.9 10.9 50 234-292 16-73 (281)
500 smart00564 PQQ beta-propeller 22.1 1.8E+02 0.0039 20.2 4.2 25 450-474 6-31 (33)
No 1
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.6e-86 Score=763.12 Aligned_cols=341 Identities=34% Similarity=0.620 Sum_probs=308.4
Q ss_pred ccCCeeeccccCCCCchhhhHHHHhhhhcccccccccceEEEEEEcCCCCCC-chhhhhhhcCC-----CCCccEEEEee
Q 043350 536 AHGGIRGWTFTSPSPLDNIIRSEIAAKEAVYLRRDDVRILVGTWNVGQGRAS-HESLLSWLGSV-----SSDVGIVAVGL 609 (1133)
Q Consensus 536 ~Dg~I~lW~l~s~~~ld~~i~~eL~~r~~eyt~~~~lrI~v~TWNv~~~~~~-~~~l~~wl~~~-----~~~~di~vig~ 609 (1133)
.|..+.+.| ++...+.++|.+++.+|+...+++|+++||||||+... .++|.+||... ..++|||||||
T Consensus 506 ~q~~v~L~d-----pv~~yv~~~L~er~~eyt~~k~i~IfvgTfNvNG~s~~~k~~L~~WLfp~s~~~~~~~aDIyviG~ 580 (1080)
T KOG0566|consen 506 AQSAVILYD-----PVHEYVLKELRERRSEYTEPKDISIFVGTFNVNGRSAAFKDDLSDWLFPISRGKEFSPADIYVIGF 580 (1080)
T ss_pred ccchhhhcC-----chhHHHHHHHHHhhhhhccccceEEEEEeeeccCccccchhhHHhhccccccCCcCCcCcEEEEee
Confidence 466666665 36788899999999999999999999999999985443 36899999864 22589999999
Q ss_pred eec-ccccchhhhhhhhhhhcCCCCcchhhHHHHHhhhcCC-CCcEEEEeeeecceEEEEEEEecccccccCceeecccc
Q 043350 610 QEV-EMGAGFLAMSAAKETVGLEGSAIGQWWQDTIGKALDE-GTTFERMGSRQLAGLLISFWVRKNLRTHVGDVDAAAVP 687 (1133)
Q Consensus 610 QE~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~-~~~y~~v~~~~l~g~~l~v~~~~~~~~~i~~v~~~~v~ 687 (1133)
||| +|+++.+.-. +..+.+.|.+.|++.|+. +..|+++.+.||+|++|++|+|++..++|++|..++++
T Consensus 581 eEvVeLnag~iv~A---------s~tk~~~Wee~i~~~Ln~~~~kYvlL~s~QlvGv~L~iF~r~~~~p~Ik~V~~~tkK 651 (1080)
T KOG0566|consen 581 EEVVELNAGNIVSA---------STTKRRFWEEKILKTLNRYKNKYVLLRSEQLVGVCLLLFIRPDHAPYIKDVAGDTKK 651 (1080)
T ss_pred hhhhhcCccceecc---------ChHHHHHHHHHHHHHhcCCCCceEEEehhhhheeeEEEEEcccccchhhhcccceee
Confidence 997 7888775321 233467899999999987 78999999999999999999999999999999999999
Q ss_pred cccccccccceeEEEEEEEcCeEEEEEecccccChHHHHHHHHHHHHHHHhCccCCCCCcccccccccccccccccccCC
Q 043350 688 CGFGRAIGNKGGVGLRIRVYDRTICFVNCHLAAHLEAVNRRNADYDHIYRNMVFSRSTSTLNSASAGVSTAVNMMKTSNT 767 (1133)
Q Consensus 688 ~G~~~~~gnKG~v~~r~~~~~~~~~fvn~Hlaa~~~~~~~Rn~d~~~i~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (1133)
|||||+.||||||||||.+++|+|||||+|||||++++++||.||.+|.+++.|++..
T Consensus 652 TGfGG~tgNKGAVAIrf~~~~TsfCFv~SHlAAG~snv~ERn~DY~tI~r~l~Fp~Gr---------------------- 709 (1080)
T KOG0566|consen 652 TGFGGATGNKGAVAIRFVYHATSFCFVCSHLAAGQSNVEERNEDYKTIARKLRFPRGR---------------------- 709 (1080)
T ss_pred cccccccCCCceEEEEEEeccccEEEEecccccccchHhhhhhhHHHHHHhccccCCc----------------------
Confidence 9999999999999999999999999999999999999999999999999999998532
Q ss_pred cccCCCCCCCCCCCCccEEEEEccCCccccCCChHHHHHhhccCChhHhhccchhHHHHHcCCcccCcccccccCCCCcc
Q 043350 768 TTTLNTEETKPDLAEADMVIFFGDFNYRLFGISYDEARDFVSQRCFDWLREKDQLRAEMKAGKVFQGMREAIIRFPPTYK 847 (1133)
Q Consensus 768 ~~~~~~~~~~~~~~~~d~~f~~GDlNyRi~~~~~~~~~~~~~~~~~~~Ll~~DqL~~~~~~~~~f~g~~E~~i~F~PTYK 847 (1133)
.|.+||+|||||||||||++ +++||+++|.+++|+.|+++|||++||++|.+|.||.|++|+|+||||
T Consensus 710 -----------~I~~HD~ifW~GDFNYRI~l-~nEEVr~~v~~~d~~kL~e~DQL~~q~~~G~vF~gF~E~~ltF~PTYK 777 (1080)
T KOG0566|consen 710 -----------MIFSHDYIFWLGDFNYRIDL-SNEEVRRLVRNQDLDKLLEYDQLTQQMNAGQVFPGFHEGQLTFPPTYK 777 (1080)
T ss_pred -----------cccCCceEEEecccceeecC-CHHHHHHHHHhccHHHHhhHHHHHHHHhcCcccccccccccccCCccc
Confidence 46899999999999999995 999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCccCCCCcccccccceeeeecCCCCCCccCCCCCcceeeeeeeeeccccCCCCCccccceEEEEEeecCHH
Q 043350 848 FERHRPGLAGYDSGEKKRIPAWCDRIIYRDSRSTPVSECSLECPVVSSILLYDAVMDVTESDHKPVHCKFHVKIAHVDRS 927 (1133)
Q Consensus 848 ~~~~~~~~~~yd~s~k~R~PswcDRIL~~~~~~~~~~~~~~~~~~~~~~~~Y~s~~~~~~SDHkPV~a~f~~~~~~~~~~ 927 (1133)
||. |++.||||||+|+||||||||||+.... ++.|.+++ +++||||||+|.|+++|..||++
T Consensus 778 yD~---gTd~YDTSeK~R~PAWTDRIL~r~e~~~--------------~l~Y~~~e-l~~SDHRPV~A~~~a~i~~Vd~~ 839 (1080)
T KOG0566|consen 778 YDP---GTDDYDTSEKCRTPAWTDRILWRGEKLE--------------LLSYKRAE-LKTSDHRPVYAIFRAEIFEVDEQ 839 (1080)
T ss_pred ccC---CCCccccchhccCccchhhheecccccc--------------cccccccc-ccccCCCceEEEEEEEEEEEcHH
Confidence 997 5589999999999999999999986542 47787764 99999999999999999999999
Q ss_pred HHHHHHHHHHHhccc
Q 043350 928 ERRRVFGEILKNNEN 942 (1133)
Q Consensus 928 ~~~~~~~~~~~~~~~ 942 (1133)
+|.++|+|++....+
T Consensus 840 kk~~l~eev~~~~~~ 854 (1080)
T KOG0566|consen 840 KKLRLFEEVKERLGP 854 (1080)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999987655
No 2
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=100.00 E-value=1.1e-78 Score=693.85 Aligned_cols=251 Identities=37% Similarity=0.654 Sum_probs=223.7
Q ss_pred hhHHHHHhhhcCCCCcEEEEeeeecceEEEEEEEecccccccCceeecccccccccccccceeEEEEEEEcCeEEEEEec
Q 043350 637 QWWQDTIGKALDEGTTFERMGSRQLAGLLISFWVRKNLRTHVGDVDAAAVPCGFGRAIGNKGGVGLRIRVYDRTICFVNC 716 (1133)
Q Consensus 637 ~~w~~~~~~~l~~~~~y~~v~~~~l~g~~l~v~~~~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~~r~~~~~~~~~fvn~ 716 (1133)
++|...+.........|++|.++||+||+|+||||++++++|++|++++|+||+||+|||||||+|||.|++|+||||||
T Consensus 348 ~~~~~~~~~~~~~~~~YvkV~S~qLvGl~L~VFvk~~l~~~Is~V~~s~V~tGl~G~~GNKGAVaIr~~l~~Ts~cFVn~ 427 (621)
T PLN03191 348 QLPEDLIKDCRKVKQKYVRIVSKQMVGIYVSVWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSISMSLFQSRLCFVCS 427 (621)
T ss_pred hhhhHHHHhhccCCCCEEEEEEEeeeeEEEEEEEehhhhhhcccceeeeEeeccccccccceeEEEEEEEcCcEEEEEEe
Confidence 34566666666667789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccChH--HHHHHHHHHHHHHHhCccCCCCCcccccccccccccccccccCCcccCCCCCCCCCCCCccEEEEEccCCc
Q 043350 717 HLAAHLE--AVNRRNADYDHIYRNMVFSRSTSTLNSASAGVSTAVNMMKTSNTTTTLNTEETKPDLAEADMVIFFGDFNY 794 (1133)
Q Consensus 717 Hlaa~~~--~~~~Rn~d~~~i~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~GDlNy 794 (1133)
|||||++ ++++||+||.+|++++.|...... .....|.+||++||||||||
T Consensus 428 HLAAg~~~~~~~rRN~D~~~I~~~l~F~~~~~~---------------------------~~~~~I~dhD~vFWlGDLNY 480 (621)
T PLN03191 428 HLTSGHKDGAEQRRNADVYEIIRRTRFSSVLDT---------------------------DQPQTIPSHDQIFWFGDLNY 480 (621)
T ss_pred ccccccccchHHHHHHHHHHHHhccccCccccc---------------------------CCCccccccceEEEecCccc
Confidence 9999875 478999999999999999742111 11234778999999999999
Q ss_pred cccCCChHHHHHhhccCChhHhhccchhHHHHHcCCcccCcccccccCCCCccccCCCCCCCCcc-----CCCCcccccc
Q 043350 795 RLFGISYDEARDFVSQRCFDWLREKDQLRAEMKAGKVFQGMREAIIRFPPTYKFERHRPGLAGYD-----SGEKKRIPAW 869 (1133)
Q Consensus 795 Ri~~~~~~~~~~~~~~~~~~~Ll~~DqL~~~~~~~~~f~g~~E~~i~F~PTYK~~~~~~~~~~yd-----~s~k~R~Psw 869 (1133)
||+. ++++++++|.+++|+.||++|||++||++|++|.||.||+|+|||||||++++ +.|| ||+|+|+|||
T Consensus 481 RIdl-~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~GF~Eg~I~FpPTYKYd~gS---d~Ydg~~~~Ts~KkR~PSW 556 (621)
T PLN03191 481 RLNM-LDTEVRKLVAQKRWDELINSDQLIKELRSGHVFDGWKEGPIKFPPTYKYEINS---DRYVGENPKEGEKKRSPAW 556 (621)
T ss_pred cccC-CHHHHHHHHhhccHHHHHHHhHHHHHHHcCCccCCcccCCccCCCCcccccCC---ccccccccccccCccccch
Confidence 9995 99999999999999999999999999999999999999999999999999865 5786 8999999999
Q ss_pred cceeeeecCCCCCCccCCCCCcceeeeeeeeeccccCCCCCccccceEEEEEeecCHHHHHHHH
Q 043350 870 CDRIIYRDSRSTPVSECSLECPVVSSILLYDAVMDVTESDHKPVHCKFHVKIAHVDRSERRRVF 933 (1133)
Q Consensus 870 cDRIL~~~~~~~~~~~~~~~~~~~~~~~~Y~s~~~~~~SDHkPV~a~f~~~~~~~~~~~~~~~~ 933 (1133)
||||||++... .++.|.+ .++++||||||+|.|.|+|+++|+.+..+++
T Consensus 557 CDRILykg~~i--------------~~l~Y~s-~ei~~SDHRPV~A~F~v~V~~id~~k~q~~~ 605 (621)
T PLN03191 557 CDRILWLGKGI--------------KQLCYKR-SEIRLSDHRPVSSMFLVEVEVFDHRKLQRAL 605 (621)
T ss_pred hheEeecCCCc--------------eEeEecc-CCcccCCchhcceEEEEEEEecCHHHHHhhh
Confidence 99999986431 3578987 6899999999999999999999988766654
No 3
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=100.00 E-value=1.4e-74 Score=647.79 Aligned_cols=299 Identities=40% Similarity=0.712 Sum_probs=263.6
Q ss_pred ccceEEEEEEcCCCC-CCchhhhhhhcCC-----CCCccEEEEeeeec-ccccchhhhhhhhhhhcCCCCcchhhHHHHH
Q 043350 571 DVRILVGTWNVGQGR-ASHESLLSWLGSV-----SSDVGIVAVGLQEV-EMGAGFLAMSAAKETVGLEGSAIGQWWQDTI 643 (1133)
Q Consensus 571 ~lrI~v~TWNv~~~~-~~~~~l~~wl~~~-----~~~~di~vig~QE~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 643 (1133)
+++|+++|||||+.+ ++.++|.+||... ..+||||||||||+ ++.+..+.+ ..+.....|.+.+
T Consensus 2 ~~~v~v~TwNv~~~~~~p~~~l~~~l~~~~~~~~~~~pDI~viglQEi~~~~~~~~~~---------~~~~~~~~W~~~i 72 (310)
T smart00128 2 DIKVLVGTWNVGGLKADPKVDVTSWLFQKIDVKQSEKPDIYVIGLQEVVDLENGVLLE---------TIAGKERLWSKLI 72 (310)
T ss_pred ceEEEEEEEECCCccCCChhhHHHhhccccccccCCCCCEEEEEeeeecccchhhhhh---------ccchhHHHHHHHH
Confidence 589999999999875 6778999999753 25799999999999 555433321 1234467899999
Q ss_pred hhhcCCCCcEEEEeeeecceEEEEEEEecccccccCceeecccccccccccccceeEEEEEEEcCeEEEEEecccccChH
Q 043350 644 GKALDEGTTFERMGSRQLAGLLISFWVRKNLRTHVGDVDAAAVPCGFGRAIGNKGGVGLRIRVYDRTICFVNCHLAAHLE 723 (1133)
Q Consensus 644 ~~~l~~~~~y~~v~~~~l~g~~l~v~~~~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~~r~~~~~~~~~fvn~Hlaa~~~ 723 (1133)
..+|+.+..|.++++.+|+||+|+||+|+++.++|++|++++|++|++|.+||||||+++|.+.+++||||||||+||++
T Consensus 73 ~~~l~~~~~Y~~v~~~~l~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~~~~nKG~v~i~~~~~~~~~~fv~~HL~a~~~ 152 (310)
T smart00128 73 ESSLNGDGQYNVLAKVRLVGILVLVFVKANHLVYIKDVETFTVKTGMGGLWGNKGAVAVRFKLSDTSFCFVNSHLAAGAS 152 (310)
T ss_pred HHhcCCCCceEEEeeeeecceEEEEEEehhhcCccceeEeeeeeccccceeecCceEEEEEEEcCcEEEEEeeccccccc
Confidence 99998778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCccCCCCCcccccccccccccccccccCCcccCCCCCCCCCCCCccEEEEEccCCccccCCCh-H
Q 043350 724 AVNRRNADYDHIYRNMVFSRSTSTLNSASAGVSTAVNMMKTSNTTTTLNTEETKPDLAEADMVIFFGDFNYRLFGISY-D 802 (1133)
Q Consensus 724 ~~~~Rn~d~~~i~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~GDlNyRi~~~~~-~ 802 (1133)
++++||+||.+|++++.|+.... ..+.++|++||||||||||+. ++ +
T Consensus 153 ~~~~R~~~~~~I~~~~~f~~~~~-------------------------------~~~~~~d~~f~~GDlNyRi~~-~~~~ 200 (310)
T smart00128 153 NVEQRNQDYKTILRALSFPERAE-------------------------------LSQFDHDVVFWFGDLNFRLDS-PSYE 200 (310)
T ss_pred hhhhhHHHHHHHHHhcCCCCCcc-------------------------------ccccccceEEEecCcceeecC-CCHH
Confidence 99999999999999998874321 114679999999999999997 55 8
Q ss_pred HHHHhhccCChhHhhccchhHHHHHcCCcccCcccccccCCCCcccc-CCCCCCCCccCCCCcccccccceeeeecCCCC
Q 043350 803 EARDFVSQRCFDWLREKDQLRAEMKAGKVFQGMREAIIRFPPTYKFE-RHRPGLAGYDSGEKKRIPAWCDRIIYRDSRST 881 (1133)
Q Consensus 803 ~~~~~~~~~~~~~Ll~~DqL~~~~~~~~~f~g~~E~~i~F~PTYK~~-~~~~~~~~yd~s~k~R~PswcDRIL~~~~~~~ 881 (1133)
++++++++++|+.|+++|||+.+++++++|.||.|++|+|||||||+ . +++.||+++|+|+|||||||||+.....
T Consensus 201 ~v~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~~f~E~~I~F~PTYK~~~~---~t~~Yd~~~k~R~PsWcDRIL~~~~~~~ 277 (310)
T smart00128 201 EVRRKISKKEFDDLLEKDQLNRQKEAGKVFKGFQEGPITFPPTYKYDSV---GTETYDTSEKKRVPAWCDRILYRSNGPN 277 (310)
T ss_pred HHHHHHhhCcHHHHhhhhhHHHHhhcccccCcCccCCcCCCCCeeecCC---CCccccCcccccCcchhheehhhccCCC
Confidence 99999999999999999999999999999999999999999999999 5 4578999999999999999999973221
Q ss_pred CCccCCCCCcceeeee-eeeeccccCCCCCccccceEEEEEeecC
Q 043350 882 PVSECSLECPVVSSIL-LYDAVMDVTESDHKPVHCKFHVKIAHVD 925 (1133)
Q Consensus 882 ~~~~~~~~~~~~~~~~-~Y~s~~~~~~SDHkPV~a~f~~~~~~~~ 925 (1133)
. ..+ .|.+++++.+||||||+|.|.|+++.++
T Consensus 278 ~------------~~~~~Y~s~~~~~~SDHkPV~~~f~v~~~~~~ 310 (310)
T smart00128 278 L------------IQLSEYHSGMELTTSDHKPVFATFRLKVTAVD 310 (310)
T ss_pred c------------eecccccCCCccCCcCcccccEEEEEEEEecC
Confidence 1 123 3999999999999999999999999875
No 4
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=8.7e-65 Score=552.42 Aligned_cols=330 Identities=32% Similarity=0.552 Sum_probs=291.0
Q ss_pred CCchhhhHHHHhhhhcccccccccceEEEEEEcCCCCCCchhhhhhhcC---CCCCccEEEEeeeec-ccccchhhhhhh
Q 043350 549 SPLDNIIRSEIAAKEAVYLRRDDVRILVGTWNVGQGRASHESLLSWLGS---VSSDVGIVAVGLQEV-EMGAGFLAMSAA 624 (1133)
Q Consensus 549 ~~ld~~i~~eL~~r~~eyt~~~~lrI~v~TWNv~~~~~~~~~l~~wl~~---~~~~~di~vig~QE~-~~~~~~~~~~~~ 624 (1133)
+++...+...+..++.+|....++.+|++++|.++..+ ..+++.||.. ...-+|+||+||||+ .+..+.+.
T Consensus 7 ~p~~~y~~~~l~~~~sk~~~~~~~~~f~~~~n~~~~~~-k~~~k~~lfP~~~~~~~~dlyVvGlQEvv~lt~~sil---- 81 (460)
T COG5411 7 DPRHPYIVAVLRQRRSKYVIEKDVSIFVSTFNPPGKPP-KASTKRWLFPEIEATELADLYVVGLQEVVELTPGSIL---- 81 (460)
T ss_pred CCCchhHHHHHHHHhhhheeecceeeEeccccCCCCCc-hhhhhhhcccccccccccceEEeccceeeeccchhhc----
Confidence 45567778889999999999999999999999997655 7889999986 234489999999997 45544321
Q ss_pred hhhhcCCCCcchhhHHHHHhhhcC---CCCcEEEEeeeecceEEEEEEEecccccccCceeecccccccccccccceeEE
Q 043350 625 KETVGLEGSAIGQWWQDTIGKALD---EGTTFERMGSRQLAGLLISFWVRKNLRTHVGDVDAAAVPCGFGRAIGNKGGVG 701 (1133)
Q Consensus 625 ~~~~~~~~~~~~~~w~~~~~~~l~---~~~~y~~v~~~~l~g~~l~v~~~~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~ 701 (1133)
+..-..+-..|...+...|+ ....|.++.+.||+|+++.||.+.+.++.+.+|+.+.-+|||+|..+|||||+
T Consensus 82 ----s~~p~~rl~~wes~~~~~Ln~~~~~eky~~l~s~q~~~~~~~vf~~~~~~~v~~~V~~~~~KtG~gg~s~nKGav~ 157 (460)
T COG5411 82 ----SADPYDRLRIWESKVLDCLNGAQSDEKYSLLRSPQLGGILLRVFSLATNLPVVKPVSGTVKKTGFGGSSSNKGAVA 157 (460)
T ss_pred ----cCCcccccchhHHHHHHHhcccccCCceEEecchhccCcceEEeeeccccceeccccccccccccceecccccccc
Confidence 11112333679999988887 35689999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCeEEEEEecccccChHHHHHHHHHHHHHHHhCccCCCCCcccccccccccccccccccCCcccCCCCCCCCCCC
Q 043350 702 LRIRVYDRTICFVNCHLAAHLEAVNRRNADYDHIYRNMVFSRSTSTLNSASAGVSTAVNMMKTSNTTTTLNTEETKPDLA 781 (1133)
Q Consensus 702 ~r~~~~~~~~~fvn~Hlaa~~~~~~~Rn~d~~~i~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1133)
++|.+.++.+||||||||||.+|.++|+.||..|.+.+.|++. ..|.
T Consensus 158 i~~~~~~t~~cFv~shlaag~~N~eeR~~Dy~~I~~~i~f~~g---------------------------------~~I~ 204 (460)
T COG5411 158 IRFNYERTSFCFVNSHLAAGVNNIEERIFDYRSIASNICFSRG---------------------------------LRIY 204 (460)
T ss_pred eeEEeecCCcEEEecchhcccccHHHHHHHHHHHHHheecCCC---------------------------------ceec
Confidence 9999999999999999999999999999999999999998643 2468
Q ss_pred CccEEEEEccCCccccCCChHHHHHhhccCC--hhHhhccchhHHHHHcCCcccCcccccccCCCCccccCCCCCCCCcc
Q 043350 782 EADMVIFFGDFNYRLFGISYDEARDFVSQRC--FDWLREKDQLRAEMKAGKVFQGMREAIIRFPPTYKFERHRPGLAGYD 859 (1133)
Q Consensus 782 ~~d~~f~~GDlNyRi~~~~~~~~~~~~~~~~--~~~Ll~~DqL~~~~~~~~~f~g~~E~~i~F~PTYK~~~~~~~~~~yd 859 (1133)
+||++||+|||||||.. .+++++..+...+ +++|+++|||..||+.|++|.||+|..|+||||||||. |++.||
T Consensus 205 ~hdti~w~GDlNyRVts-~~e~v~~~~~~~~g~~~~l~~~DqL~~e~~~g~~f~~f~E~~i~FpPTYKfd~---gt~~yd 280 (460)
T COG5411 205 DHDTIFWLGDLNYRVTS-TNEEVRPEIASDDGRLDKLFEYDQLLWEMEVGNVFPGFKEPVITFPPTYKFDY---GTDEYD 280 (460)
T ss_pred ccceEEEecccCceeec-CchhcchhhhCCcchhhhhhhhhhHhhhhcccccccceecccccCCCceEeec---CCcccc
Confidence 99999999999999996 8999998888777 89999999999999999999999999999999999996 568999
Q ss_pred CCCCcccccccceeeeecCCCCCCccCCCCCcceeeeeeeeeccccCCCCCccccceEEEEEeecCHHHHHHHHHHHHH
Q 043350 860 SGEKKRIPAWCDRIIYRDSRSTPVSECSLECPVVSSILLYDAVMDVTESDHKPVHCKFHVKIAHVDRSERRRVFGEILK 938 (1133)
Q Consensus 860 ~s~k~R~PswcDRIL~~~~~~~~~~~~~~~~~~~~~~~~Y~s~~~~~~SDHkPV~a~f~~~~~~~~~~~~~~~~~~~~~ 938 (1133)
+++|.|+|||||||||++..- ....|.+++.+++||||||+|+|.+++..+|++++....+++.-
T Consensus 281 tsdk~RiPsWtDRIl~~s~~~--------------~p~sY~sip~l~~SDHrPV~a~~~~~i~~~d~~~k~~~~~~l~~ 345 (460)
T COG5411 281 TSDKGRIPSWTDRILYKSEQL--------------TPHSYSSIPHLMISDHRPVYATFRAKIKVVDPSKKEGLIEKLYA 345 (460)
T ss_pred ccccccCCchhhhhhhhcccc--------------ccccccccCceeecCCCeEEEEEecceEEeCcchhhhhhhhhhh
Confidence 999999999999999998541 24789999999999999999999999999999988877777653
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-40 Score=350.43 Aligned_cols=345 Identities=17% Similarity=0.228 Sum_probs=263.0
Q ss_pred CCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecC
Q 043350 98 GPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQE 174 (1133)
Q Consensus 98 ~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~D 174 (1133)
||..++-+ +.|+|+|..||||++|.++|+||.. .+.|..+.++|.. +|.+|+ +|||+.|| +.|
T Consensus 113 GH~e~Vl~---~~fsp~g~~l~tGsGD~TvR~WD~~----TeTp~~t~KgH~~-------WVlcvawsPDgk~iASG~~d 178 (480)
T KOG0271|consen 113 GHGEAVLS---VQFSPTGSRLVTGSGDTTVRLWDLD----TETPLFTCKGHKN-------WVLCVAWSPDGKKIASGSKD 178 (480)
T ss_pred CCCCcEEE---EEecCCCceEEecCCCceEEeeccC----CCCcceeecCCcc-------EEEEEEECCCcchhhccccC
Confidence 66666555 8899999999999999999999998 5555999999999 999999 99999999 889
Q ss_pred CcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC-----CCCEEEEEeCCCeEEEEeCCCCCCCCC
Q 043350 175 CGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC-----GNRLVWTGHKDGKIRSWKMDQTLDDAN 249 (1133)
Q Consensus 175 g~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp-----d~~~LaSgs~Dg~V~vWd~~~~~~~~~ 249 (1133)
|+|++||..+..... -.+.+|...|++|+|.| ..++||++|.||.|+|||+..+
T Consensus 179 g~I~lwdpktg~~~g----------------~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~----- 237 (480)
T KOG0271|consen 179 GSIRLWDPKTGQQIG----------------RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG----- 237 (480)
T ss_pred CeEEEecCCCCCccc----------------ccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc-----
Confidence 999999987643221 13557888999999987 6789999999999999999861
Q ss_pred CCcccccccccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCCC--CceeeEeCCCCceEEEEeecceEEEccCceeeecc
Q 043350 250 NPFKEGLSWQAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWES--IEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGA 327 (1133)
Q Consensus 250 ~~~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~~--~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~ 327 (1133)
.++..+.||+.+|+||+|-.+|-|+|||.|++||+|+... ..+.+..|.+...-+++ +
T Consensus 238 ---~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lal---------s-------- 297 (480)
T KOG0271|consen 238 ---TCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLAL---------S-------- 297 (480)
T ss_pred ---eEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeec---------c--------
Confidence 5678999999999999998766699999999999999866 23344444443331111 1
Q ss_pred ccCCCCCeEEEEecCCceEEEecCCCceeE--eecCCCceeEEEecCCc-cee--EEEeCCCCCccccccceEEEEeeCC
Q 043350 328 CSISSTEIKCMLSDHARARVWCAQPLSFSL--WDARSKELLKVFNIEGH-IEN--RVDTQSVQDQPVEDEMKVKFVSSNK 402 (1133)
Q Consensus 328 ~~~~~~~~~~l~S~d~~i~vwss~d~~I~l--WD~~tg~~l~~~~~h~~-~v~--~l~~sp~g~~~~e~e~~v~lasgs~ 402 (1133)
.|..++. || .++...+.+..... ... ....-..++ ++++||.
T Consensus 298 -----------------------Tdy~LRtgaf~-~t~~~~~~~se~~~~Al~rY~~~~~~~~e---------rlVSgsD 344 (480)
T KOG0271|consen 298 -----------------------TDYVLRTGAFD-HTGRKPKSFSEEQKKALERYEAVLKDSGE---------RLVSGSD 344 (480)
T ss_pred -----------------------chhhhhccccc-cccccCCChHHHHHHHHHHHHHhhccCcc---------eeEEecC
Confidence 0000000 00 01111111100000 000 000001112 3999999
Q ss_pred CCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCc
Q 043350 403 KEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQC 480 (1133)
Q Consensus 403 Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~ 480 (1133)
|.++..|....... |-..+.+|..-|+.+.||||+ +|++++-|..|++|+. +|+.+.+|.+|-.
T Consensus 345 d~tlflW~p~~~kk--------------pi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~ 410 (480)
T KOG0271|consen 345 DFTLFLWNPFKSKK--------------PITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVA 410 (480)
T ss_pred CceEEEeccccccc--------------chhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccc
Confidence 99997665432111 112356788888888899999 9999999999999999 8899999999999
Q ss_pred ceeE--EecCCCEEEEEecCCeEEEEeCCC-CcceeeeccccCeEEeeec--ccceeeecccCCeeecc
Q 043350 481 AVQC--FCTYGSRMYVGYVSGYLQILDLDG-NLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWT 544 (1133)
Q Consensus 481 ~V~~--fs~dg~~Lasgs~DG~I~vwd~~g-~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~ 544 (1133)
+|+- |+.|.++|++||.|.+++|||+.. ++...+.||.+.|.++.|+ |+.++|++.|..+++|.
T Consensus 411 ~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 411 AVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9997 999999999999999999999986 5777899999999999999 99999999999999995
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-36 Score=320.04 Aligned_cols=324 Identities=17% Similarity=0.255 Sum_probs=258.3
Q ss_pred eccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEE
Q 043350 208 ESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIK 286 (1133)
Q Consensus 208 ~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~ 286 (1133)
+.+|.++|.|++|+|+|..|+||+.|.++|+||+.+ -.+..+.++|...|.||+|+|||+ |+||+.||+|+
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T--------eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT--------ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR 182 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCC--------CCcceeecCCccEEEEEEECCCcchhhccccCCeEE
Confidence 557889999999999999999999999999999987 145778999999999999999999 99999999999
Q ss_pred EEeCCCCc-eeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCce
Q 043350 287 IWPWESIE-KSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKEL 365 (1133)
Q Consensus 287 iWdl~~~~-~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~ 365 (1133)
+||..++. ..-.+..+.+++.++..+ . .|..+....++++ +.||+++|||+..+.+
T Consensus 183 lwdpktg~~~g~~l~gH~K~It~Lawe-----p----------~hl~p~~r~las~--------skDg~vrIWd~~~~~~ 239 (480)
T KOG0271|consen 183 LWDPKTGQQIGRALRGHKKWITALAWE-----P----------LHLVPPCRRLASS--------SKDGSVRIWDTKLGTC 239 (480)
T ss_pred EecCCCCCcccccccCcccceeEEeec-----c----------cccCCCccceecc--------cCCCCEEEEEccCceE
Confidence 99987732 222233334443333111 1 1124555678888 9999999999999999
Q ss_pred eEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccc---cccccceeeccCCceEEEEEecCCc-----ccC
Q 043350 366 LKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGF---LQRSRNAIMGAADAVRRVATRGAGA-----FVD 437 (1133)
Q Consensus 366 l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~---~~~~~~~~~~~~~~V~~v~~~p~g~-----~~~ 437 (1133)
+..+.+|...|+|+.|--++ + |++||.|++|+.| ++...+.+.+|...|..++.+.+-. |..
T Consensus 240 ~~~lsgHT~~VTCvrwGG~g-l---------iySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~ 309 (480)
T KOG0271|consen 240 VRTLSGHTASVTCVRWGGEG-L---------IYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDH 309 (480)
T ss_pred EEEeccCccceEEEEEcCCc-e---------EEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccccc
Confidence 99999999999999998776 6 8999999999944 4667888999999999998874322 211
Q ss_pred CCCCEEE-------------EEECCCC-eEEEEecCCeEEEEeC--CCCeeEEEecCCcceeE--EecCCCEEEEEecCC
Q 043350 438 DTKRTEA-------------MVLTADG-MIWSGCTNGLLVQWDG--NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSG 499 (1133)
Q Consensus 438 h~~~V~s-------------l~~spdg-~L~sgs~DG~I~vWd~--~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG 499 (1133)
....+.. ...-..+ .|++|+.|.++.+|+. +.+++..+.+|+.-|+. ||||+++||++|-|.
T Consensus 310 t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk 389 (480)
T KOG0271|consen 310 TGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK 389 (480)
T ss_pred ccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc
Confidence 1111000 0011123 7999999999999998 44789999999999998 999999999999999
Q ss_pred eEEEEeCC-CCcceeeeccccCeEEeeec--ccceeeecccCCeeeccccCCCCchhhhHHHHhhhhcccccccccceEE
Q 043350 500 YLQILDLD-GNLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTSPSPLDNIIRSEIAAKEAVYLRRDDVRILV 576 (1133)
Q Consensus 500 ~I~vwd~~-g~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s~~~ld~~i~~eL~~r~~eyt~~~~lrI~v 576 (1133)
.|++||.. |+.+.+|+||-++|..++|+ .+.|+|||.|.++++|++.+..... . .+-..-.||.
T Consensus 390 SVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~-----D--------LpGh~DEVf~ 456 (480)
T KOG0271|consen 390 SVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQ-----D--------LPGHADEVFA 456 (480)
T ss_pred ceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecc-----c--------CCCCCceEEE
Confidence 99999986 78999999999999999999 6799999999999999987632211 1 1224557889
Q ss_pred EEEEcCCCC
Q 043350 577 GTWNVGQGR 585 (1133)
Q Consensus 577 ~TWNv~~~~ 585 (1133)
..|...|++
T Consensus 457 vDwspDG~r 465 (480)
T KOG0271|consen 457 VDWSPDGQR 465 (480)
T ss_pred EEecCCCce
Confidence 999887654
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-32 Score=303.69 Aligned_cols=405 Identities=16% Similarity=0.210 Sum_probs=294.8
Q ss_pred CCCcccccCCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCC
Q 043350 90 VNEDYVCPGPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQ 168 (1133)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~ 168 (1133)
|.-....+.|..+.+. ..|+|.|.|+|+|...|+||||+... .......+++.-.+ +|..|+ ..+++
T Consensus 49 ~~~~~iYtEH~~~vtV---AkySPsG~yiASGD~sG~vRIWdtt~--~~hiLKnef~v~aG-------~I~Di~Wd~ds~ 116 (603)
T KOG0318|consen 49 PASVDIYTEHAHQVTV---AKYSPSGFYIASGDVSGKVRIWDTTQ--KEHILKNEFQVLAG-------PIKDISWDFDSK 116 (603)
T ss_pred ccceeeeccccceeEE---EEeCCCceEEeecCCcCcEEEEeccC--cceeeeeeeeeccc-------ccccceeCCCCc
Confidence 4444455567555555 88999999999999999999999762 01111234555556 899999 88998
Q ss_pred eEE-ecC-----CcEEEeeCCCCCCcCcCCCcccc-------------CCCCC-------CCceee----ccCCCCeEEE
Q 043350 169 LWA-GQE-----CGVRFWNLEDSYEPGAGIGGRVR-------------RGDED-------AAPFYE----SANTSPTMCL 218 (1133)
Q Consensus 169 lla-s~D-----g~VrvWdl~~~~~~~~gh~~~v~-------------~g~~~-------~~~~~~----~~h~s~V~~l 218 (1133)
.++ ..+ |.+.+||-.+....+.||..++. .+.++ ..||.+ ..|..-|.|+
T Consensus 117 RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~V 196 (603)
T KOG0318|consen 117 RIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCV 196 (603)
T ss_pred EEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeE
Confidence 888 333 36778888877777888886643 11111 122222 2367789999
Q ss_pred EEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCC--ce
Q 043350 219 MVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESI--EK 295 (1133)
Q Consensus 219 a~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~--~~ 295 (1133)
.|+|||.++||++.||+|.+||-..++. ..++..-.+|.+.|.+|+|+||+. ++|+|.|.++||||+.+. ++
T Consensus 197 RysPDG~~Fat~gsDgki~iyDGktge~-----vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~ 271 (603)
T KOG0318|consen 197 RYSPDGSRFATAGSDGKIYIYDGKTGEK-----VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS 271 (603)
T ss_pred EECCCCCeEEEecCCccEEEEcCCCccE-----EEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEE
Confidence 9999999999999999999999776332 122222349999999999999999 999999999999999873 22
Q ss_pred eeEeCCC-CceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCc
Q 043350 296 SLSLKPE-EKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGH 374 (1133)
Q Consensus 296 ~l~~~~~-~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~ 374 (1133)
.+.+... +...+.+ + ...+.++.+ +.+|+|.+++......++++.+|..
T Consensus 272 t~~~~~~v~dqqvG~-----l---------------Wqkd~lItV----------Sl~G~in~ln~~d~~~~~~i~GHnK 321 (603)
T KOG0318|consen 272 TWPMGSTVEDQQVGC-----L---------------WQKDHLITV----------SLSGTINYLNPSDPSVLKVISGHNK 321 (603)
T ss_pred EeecCCchhceEEEE-----E---------------EeCCeEEEE----------EcCcEEEEecccCCChhheeccccc
Confidence 2222111 1110110 1 112333333 4478888888898899999999999
Q ss_pred ceeEEEeCCCCCccccccceEEEEeeCCCCcccccccccccee----eccCCceEEEEEecCCc----------------
Q 043350 375 IENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAI----MGAADAVRRVATRGAGA---------------- 434 (1133)
Q Consensus 375 ~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~----~~~~~~V~~v~~~p~g~---------------- 434 (1133)
.|+++..++++.+ |.+|+.||.|..|+....... .+|...|.+++....+.
T Consensus 322 ~ITaLtv~~d~~~---------i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~ 392 (603)
T KOG0318|consen 322 SITALTVSPDGKT---------IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLK 392 (603)
T ss_pred ceeEEEEcCCCCE---------EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecc
Confidence 9999999999999 999999999986653321111 23444444333332111
Q ss_pred --------------------------------------ccCCC--------CCEEEEEECCCC-eEEEEecCCeEEEEeC
Q 043350 435 --------------------------------------FVDDT--------KRTEAMVLTADG-MIWSGCTNGLLVQWDG 467 (1133)
Q Consensus 435 --------------------------------------~~~h~--------~~V~sl~~spdg-~L~sgs~DG~I~vWd~ 467 (1133)
+.++. -...+++++|++ .++.|+.||.|++|.+
T Consensus 393 ~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl 472 (603)
T KOG0318|consen 393 DNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSL 472 (603)
T ss_pred cCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEe
Confidence 11111 135678899999 9999999999999999
Q ss_pred CCCe---eEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCCCc--ceeeeccccCeEEeeec--ccceeeecccC
Q 043350 468 NGNR---VSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGNL--TASWIAHSSPVLKLAVG--VDHIYSLAAHG 538 (1133)
Q Consensus 468 ~g~~---l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~~--l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg 538 (1133)
+|.. ......|..+|++ +|||+.|||+|...+.|.+||+.... ...|.-|+..|.+|+|+ +..++|+|.|-
T Consensus 473 ~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt 552 (603)
T KOG0318|consen 473 SGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDT 552 (603)
T ss_pred cCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccc
Confidence 7733 3345669999999 99999999999999999999998643 45677899999999999 88999999999
Q ss_pred CeeeccccCCCC
Q 043350 539 GIRGWTFTSPSP 550 (1133)
Q Consensus 539 ~I~lW~l~s~~~ 550 (1133)
.|.+|++..|..
T Consensus 553 ~Viiysv~kP~~ 564 (603)
T KOG0318|consen 553 NVIIYSVKKPAK 564 (603)
T ss_pred eEEEEEccChhh
Confidence 999999987654
No 8
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.1e-33 Score=319.08 Aligned_cols=405 Identities=16% Similarity=0.172 Sum_probs=309.8
Q ss_pred CCCccccc---CCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eC
Q 043350 90 VNEDYVCP---GPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CT 165 (1133)
Q Consensus 90 p~~~~~~~---~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~ 165 (1133)
|.+..++. .|++|+.. +.|+|.|..||+||.||.+++||.. +......|+||++ .|.++. .+
T Consensus 92 ~tgk~irswKa~He~Pvi~---ma~~~~g~LlAtggaD~~v~VWdi~----~~~~th~fkG~gG-------vVssl~F~~ 157 (775)
T KOG0319|consen 92 PTGKLIRSWKAIHEAPVIT---MAFDPTGTLLATGGADGRVKVWDIK----NGYCTHSFKGHGG-------VVSSLLFHP 157 (775)
T ss_pred ccchHhHhHhhccCCCeEE---EEEcCCCceEEeccccceEEEEEee----CCEEEEEecCCCc-------eEEEEEeCC
Confidence 56655554 47888766 8899999999999999999999998 6665889999999 999998 55
Q ss_pred C--CCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 043350 166 D--TQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKM 241 (1133)
Q Consensus 166 d--g~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~ 241 (1133)
+ ..+|+ +.|++|++||+..... +.| ++..|++.|+++++.+|+..++++++|..+.|||+
T Consensus 158 ~~~~~lL~sg~~D~~v~vwnl~~~~t--cl~--------------~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~ 221 (775)
T KOG0319|consen 158 HWNRWLLASGATDGTVRVWNLNDKRT--CLH--------------TMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDL 221 (775)
T ss_pred ccchhheeecCCCceEEEEEcccCch--HHH--------------HHHhhhhheeeeeeccCCceEEEeccCcEEEEeeh
Confidence 4 34445 7899999999986322 222 36689999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccccccccCCCCeEEEEEeeC-----Cc-EEEEeCCCcEEEEeCCCC--cee-----------eEeCCC
Q 043350 242 DQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQ-----GD-LWSGGEGGVIKIWPWESI--EKS-----------LSLKPE 302 (1133)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~-----g~-L~Sgs~DgtI~iWdl~~~--~~~-----------l~~~~~ 302 (1133)
... +...++ .-...+-++.+-++ |. ++|+|.+|.+++||.++. ... +..-+.
T Consensus 222 ~~~--------~~l~~l-p~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~ 292 (775)
T KOG0319|consen 222 VQY--------KKLKTL-PLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIES 292 (775)
T ss_pred hhh--------hhhhee-chhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccc
Confidence 651 222222 22345667777776 66 999999999999999872 100 011112
Q ss_pred CceEEEEeecce--EEEccCceeeeccccC---------CCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEec
Q 043350 303 EKHMAALLVERS--FIDLRAQVTVNGACSI---------SSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNI 371 (1133)
Q Consensus 303 ~~~l~s~~~d~s--~~d~~~~~~v~~~~~~---------~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~ 371 (1133)
...++..+.|.. +++.++...+..+... ..++...++.. .....+++++..+..+. .+.+
T Consensus 293 ~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVA--------TNs~~lr~y~~~~~~c~-ii~G 363 (775)
T KOG0319|consen 293 MSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVA--------TNSPELRLYTLPTSYCQ-IIPG 363 (775)
T ss_pred cCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEE--------eCCCceEEEecCCCceE-EEeC
Confidence 223334444444 4444443333322221 12222223222 45677888877766665 8899
Q ss_pred CCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccc--c-----ccceeeccCCceEEEEEecCCc----------
Q 043350 372 EGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQ--R-----SRNAIMGAADAVRRVATRGAGA---------- 434 (1133)
Q Consensus 372 h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~--~-----~~~~~~~~~~~V~~v~~~p~g~---------- 434 (1133)
|...|.+++....|.+ |++||+|.+++.|.. . +.....+|...|..++++..+.
T Consensus 364 H~e~vlSL~~~~~g~l---------lat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~ 434 (775)
T KOG0319|consen 364 HTEAVLSLDVWSSGDL---------LATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDC 434 (775)
T ss_pred chhheeeeeecccCcE---------EEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCc
Confidence 9999999997777888 999999999995532 1 3344568888888887754332
Q ss_pred ------------------------ccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--Ee
Q 043350 435 ------------------------FVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FC 486 (1133)
Q Consensus 435 ------------------------~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs 486 (1133)
...|...|++++++|+. .|+|||.|.+.++|++ +...+.++.+|...|+| |+
T Consensus 435 tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs 514 (775)
T KOG0319|consen 435 TLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFS 514 (775)
T ss_pred eEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEec
Confidence 23578889999999999 9999999999999999 66889999999999999 99
Q ss_pred cCCCEEEEEecCCeEEEEeCCC-CcceeeeccccCeEEeeec--ccceeeecccCCeeeccccCCCCc
Q 043350 487 TYGSRMYVGYVSGYLQILDLDG-NLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTSPSPL 551 (1133)
Q Consensus 487 ~dg~~Lasgs~DG~I~vwd~~g-~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s~~~l 551 (1133)
+..+.|+++|.|++|+||.++. .++++|.||...|..+.|- +..|+|++.||.|++|++.+..++
T Consensus 515 ~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~ 582 (775)
T KOG0319|consen 515 KNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECE 582 (775)
T ss_pred cccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhh
Confidence 9999999999999999999985 7899999999999999998 999999999999999999885543
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-33 Score=303.49 Aligned_cols=273 Identities=16% Similarity=0.192 Sum_probs=233.7
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeC--Cc-EEEEeCCCcEE
Q 043350 210 ANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQ--GD-LWSGGEGGVIK 286 (1133)
Q Consensus 210 ~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~--g~-L~Sgs~DgtI~ 286 (1133)
+...||..+.|+.+++.|||||.+|.++||+... ...+.++.||...|.++.|+|. +. |+||+.||+++
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~--------~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvk 244 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ--------CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVK 244 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCC--------cceeEEEeccccceeeEEEccCCCccceeeeccCCcee
Confidence 4567999999999999999999999999999986 2667899999999999999998 33 99999999999
Q ss_pred EEeCCCC--ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCc
Q 043350 287 IWPWESI--EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKE 364 (1133)
Q Consensus 287 iWdl~~~--~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~ 364 (1133)
+|++++. ...+..|.... ..+. ..+++.+++++ +.|.+-++||++++.
T Consensus 245 lw~~~~e~~l~~l~gH~~RV--------------------s~Va--fHPsG~~L~Ta--------sfD~tWRlWD~~tk~ 294 (459)
T KOG0272|consen 245 LWKLSQETPLQDLEGHLARV--------------------SRVA--FHPSGKFLGTA--------SFDSTWRLWDLETKS 294 (459)
T ss_pred eeccCCCcchhhhhcchhhh--------------------eeee--ecCCCceeeec--------ccccchhhcccccch
Confidence 9999873 22233332211 1111 33555566666 789999999999999
Q ss_pred eeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEE
Q 043350 365 LLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEA 444 (1133)
Q Consensus 365 ~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~s 444 (1133)
.+...++|+..|.+++|.++|.+ +++|+.|..-+.|+.+....++ + +.+|.+.|.+
T Consensus 295 ElL~QEGHs~~v~~iaf~~DGSL---------~~tGGlD~~~RvWDlRtgr~im----------~-----L~gH~k~I~~ 350 (459)
T KOG0272|consen 295 ELLLQEGHSKGVFSIAFQPDGSL---------AATGGLDSLGRVWDLRTGRCIM----------F-----LAGHIKEILS 350 (459)
T ss_pred hhHhhcccccccceeEecCCCce---------eeccCccchhheeecccCcEEE----------E-----ecccccceee
Confidence 99999999999999999999999 9999999998888877544432 2 4578888999
Q ss_pred EEECCCC-eEEEEecCCeEEEEeCCC-CeeEEEecCCcceeE--Eec-CCCEEEEEecCCeEEEEeCCC-Ccceeeeccc
Q 043350 445 MVLTADG-MIWSGCTNGLLVQWDGNG-NRVSDILHHQCAVQC--FCT-YGSRMYVGYVSGYLQILDLDG-NLTASWIAHS 518 (1133)
Q Consensus 445 l~~spdg-~L~sgs~DG~I~vWd~~g-~~l~~~~~h~~~V~~--fs~-dg~~Lasgs~DG~I~vwd~~g-~~l~~~~~H~ 518 (1133)
+.|+|+| .|+||+.|++++|||+.+ .++.++.+|..-|+. |+| .|.+|++++.|++++||...+ .+++++.||.
T Consensus 351 V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe 430 (459)
T KOG0272|consen 351 VAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHE 430 (459)
T ss_pred EeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCc
Confidence 9999999 999999999999999955 789999999999987 998 788999999999999999874 7899999999
Q ss_pred cCeEEeeec--ccceeeecccCCeeecc
Q 043350 519 SPVLKLAVG--VDHIYSLAAHGGIRGWT 544 (1133)
Q Consensus 519 ~~V~~l~fs--~~~L~S~s~Dg~I~lW~ 544 (1133)
+.|.++.++ +++++|+|.|.++++|.
T Consensus 431 ~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 431 GKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999 88999999999999996
No 10
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-31 Score=305.49 Aligned_cols=430 Identities=17% Similarity=0.202 Sum_probs=324.8
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeecc-CCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCC
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRP-HPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLED 184 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~-H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~ 184 (1133)
....||.+.|.+++..+.+++|++.+ ++. +..++. |.. +|..++ .+.+.++| +.|+.|+|||+..
T Consensus 68 ~~l~~d~~~L~~a~rs~llrv~~L~t---gk~-irswKa~He~-------Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~ 136 (775)
T KOG0319|consen 68 LALTPDEEVLVTASRSQLLRVWSLPT---GKL-IRSWKAIHEA-------PVITMAFDPTGTLLATGGADGRVKVWDIKN 136 (775)
T ss_pred eeecCCccEEEEeeccceEEEEEccc---chH-hHhHhhccCC-------CeEEEEEcCCCceEEeccccceEEEEEeeC
Confidence 55689999999999999999999885 655 777887 888 999999 88888888 8999999999998
Q ss_pred CCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCC--CEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCC
Q 043350 185 SYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGN--RLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHR 262 (1133)
Q Consensus 185 ~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~--~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~ 262 (1133)
.+.+. .+.+|.+.|.++.|+|+- .+|++|..|+++++||+.. .. .++.++..|.
T Consensus 137 ~~~th-----------------~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~-----~~--tcl~~~~~H~ 192 (775)
T KOG0319|consen 137 GYCTH-----------------SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLND-----KR--TCLHTMILHK 192 (775)
T ss_pred CEEEE-----------------EecCCCceEEEEEeCCccchhheeecCCCceEEEEEccc-----Cc--hHHHHHHhhh
Confidence 65542 366778899999999954 4689999999999999985 11 3678899999
Q ss_pred CCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCC-----------ceeeEeCCC-----CceEEEEeecce--EEEccCcee
Q 043350 263 GPVLAMIFSSQGD-LWSGGEGGVIKIWPWESI-----------EKSLSLKPE-----EKHMAALLVERS--FIDLRAQVT 323 (1133)
Q Consensus 263 ~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~-----------~~~l~~~~~-----~~~l~s~~~d~s--~~d~~~~~~ 323 (1133)
..|++++|++++. ++++|.|..|.+||+... +..+..-++ +.++.+.+.++. .|+..+..+
T Consensus 193 S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~ 272 (775)
T KOG0319|consen 193 SAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKC 272 (775)
T ss_pred hheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchh
Confidence 9999999999999 999999999999999652 122222222 345666665555 777766555
Q ss_pred eeccccCCCCCe--EEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeC-CCCCccccccceEEEEee
Q 043350 324 VNGACSISSTEI--KCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQ-SVQDQPVEDEMKVKFVSS 400 (1133)
Q Consensus 324 v~~~~~~~~~~~--~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~s-p~g~~~~e~e~~v~lasg 400 (1133)
+......+.++. ...+...+...+ -..+..+.++|..+.++.+.+-+..+.|..+.|- |+.++ ++.+
T Consensus 273 ~~~~~~~~~~e~~~~~~~~~~~~~l~-vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~---------laVA 342 (775)
T KOG0319|consen 273 VYKQRQSDSEEIDHLLAIESMSQLLL-VTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESH---------LAVA 342 (775)
T ss_pred hhhhccCCchhhhcceeccccCceEE-EEccceEEEEEccccEEehhhcCCchhheeeeecCCccce---------EEEE
Confidence 444433222221 111222222222 2358889999999999999999999999988874 45566 8888
Q ss_pred CCCCccccc--cccccceeeccCCceEEEEEecCCc----------------------------ccCCCCCEEEEEECCC
Q 043350 401 NKKEKPHGF--LQRSRNAIMGAADAVRRVATRGAGA----------------------------FVDDTKRTEAMVLTAD 450 (1133)
Q Consensus 401 s~Dg~i~~~--~~~~~~~~~~~~~~V~~v~~~p~g~----------------------------~~~h~~~V~sl~~spd 450 (1133)
+..+.++.+ .+..-+.+.||.+.|.++.....|- ..+|...|.+++++..
T Consensus 343 TNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~ 422 (775)
T KOG0319|consen 343 TNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKL 422 (775)
T ss_pred eCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeeccc
Confidence 888888733 3333446788998888887333331 5689999999999888
Q ss_pred C--eEEEEecCCeEEEEeCCC----C--ee----EEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCC-CCcceeee
Q 043350 451 G--MIWSGCTNGLLVQWDGNG----N--RV----SDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLD-GNLTASWI 515 (1133)
Q Consensus 451 g--~L~sgs~DG~I~vWd~~g----~--~l----~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~ 515 (1133)
+ .++++|.|++|++|++.. . .+ .+...|...|+| ++|..+.+|+||.|.+.+||+++ ..++.++.
T Consensus 423 ~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs 502 (775)
T KOG0319|consen 423 GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS 502 (775)
T ss_pred CccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee
Confidence 8 999999999999999844 1 11 123459999999 99999999999999999999998 46789999
Q ss_pred ccccCeEEeeec--ccceeeecccCCeeeccccCCCCchhhhHHHHhhhhcccccccccce------EEEEEEcCC
Q 043350 516 AHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTSPSPLDNIIRSEIAAKEAVYLRRDDVRI------LVGTWNVGQ 583 (1133)
Q Consensus 516 ~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s~~~ld~~i~~eL~~r~~eyt~~~~lrI------~v~TWNv~~ 583 (1133)
||...|++|.|+ .+.++|+|.|++|++|.+.....+..+--+...--+..|......-| .+--||+..
T Consensus 503 GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 503 GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT 578 (775)
T ss_pred CCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence 999999999999 78999999999999999998777654433333333333443333222 344688764
No 11
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.1e-32 Score=293.59 Aligned_cols=273 Identities=13% Similarity=0.176 Sum_probs=231.7
Q ss_pred CCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCC--CCeEE--e
Q 043350 98 GPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTD--TQLWA--G 172 (1133)
Q Consensus 98 ~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~d--g~lla--s 172 (1133)
|-+.|... ..|++++..|||||-+|.++||+... ... +.+|++|.. .|.++. +|. +.-+| +
T Consensus 173 gd~rPis~---~~fS~ds~~laT~swsG~~kvW~~~~---~~~-~~~l~gH~~-------~v~~~~fhP~~~~~~lat~s 238 (459)
T KOG0272|consen 173 GDTRPISG---CSFSRDSKHLATGSWSGLVKVWSVPQ---CNL-LQTLRGHTS-------RVGAAVFHPVDSDLNLATAS 238 (459)
T ss_pred cCCCccee---eEeecCCCeEEEeecCCceeEeecCC---cce-eEEEecccc-------ceeeEEEccCCCccceeeec
Confidence 55566555 88999999999999999999999874 444 889999999 888888 664 44555 8
Q ss_pred cCCcEEEeeCCC--CCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCC
Q 043350 173 QECGVRFWNLED--SYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANN 250 (1133)
Q Consensus 173 ~Dg~VrvWdl~~--~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~ 250 (1133)
.||+|++|++++ .... +.+|...|..++|+|+|++|+|++.|.+-++||+.+
T Consensus 239 ~Dgtvklw~~~~e~~l~~-------------------l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t------- 292 (459)
T KOG0272|consen 239 ADGTVKLWKLSQETPLQD-------------------LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLET------- 292 (459)
T ss_pred cCCceeeeccCCCcchhh-------------------hhcchhhheeeeecCCCceeeecccccchhhccccc-------
Confidence 999999999987 3333 335666899999999999999999999999999986
Q ss_pred CcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeecccc
Q 043350 251 PFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACS 329 (1133)
Q Consensus 251 ~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~ 329 (1133)
-.++....||...|.+|+|.+||. ++|||.|..-+|||+
T Consensus 293 -k~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDl--------------------------------------- 332 (459)
T KOG0272|consen 293 -KSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDL--------------------------------------- 332 (459)
T ss_pred -chhhHhhcccccccceeEecCCCceeeccCccchhheeec---------------------------------------
Confidence 156778899999999999999999 899988887766665
Q ss_pred CCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccc
Q 043350 330 ISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGF 409 (1133)
Q Consensus 330 ~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~ 409 (1133)
++|+++..|.+|...|.+|+|+|+|.. +|+||.|++++.|
T Consensus 333 -------------------------------Rtgr~im~L~gH~k~I~~V~fsPNGy~---------lATgs~Dnt~kVW 372 (459)
T KOG0272|consen 333 -------------------------------RTGRCIMFLAGHIKEILSVAFSPNGYH---------LATGSSDNTCKVW 372 (459)
T ss_pred -------------------------------ccCcEEEEecccccceeeEeECCCceE---------EeecCCCCcEEEe
Confidence 778889999999999999999999999 9999999999977
Q ss_pred cccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECC-CC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--
Q 043350 410 LQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTA-DG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC-- 484 (1133)
Q Consensus 410 ~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~sp-dg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~-- 484 (1133)
+.+....+ -.+.+|..-|..+.|+| .| +|+|++.|+++++|.. +.++++++.+|.+.|.+
T Consensus 373 DLR~r~~l---------------y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~D 437 (459)
T KOG0272|consen 373 DLRMRSEL---------------YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLD 437 (459)
T ss_pred eecccccc---------------eecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEE
Confidence 76633321 11345666667777777 45 9999999999999999 55999999999999999
Q ss_pred EecCCCEEEEEecCCeEEEEe
Q 043350 485 FCTYGSRMYVGYVSGYLQILD 505 (1133)
Q Consensus 485 fs~dg~~Lasgs~DG~I~vwd 505 (1133)
+++++++|++++.|.++++|.
T Consensus 438 is~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 438 ISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eccCCceEEEeccCceeeecc
Confidence 999999999999999999995
No 12
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=7.9e-30 Score=290.84 Aligned_cols=388 Identities=16% Similarity=0.223 Sum_probs=298.8
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCC
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDS 185 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~ 185 (1133)
...+|+.-.||.|-.||.|+||+.. ...+..++.+|.. .|+.+. ...|..|+ |.|+.|.+||+-+.
T Consensus 71 l~~~~d~l~lAVGYaDGsVqif~~~----s~~~~~tfngHK~-------AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E 139 (888)
T KOG0306|consen 71 LRSSDDILLLAVGYADGSVQIFSLE----SEEILITFNGHKA-------AVTTLKFDKIGTRLASGSKDTDIIVWDLVGE 139 (888)
T ss_pred eeccCCcceEEEEecCceEEeeccC----CCceeeeeccccc-------ceEEEEEcccCceEeecCCCccEEEEEeccc
Confidence 4457888899999999999999987 3455889999999 999999 88888888 88999999998763
Q ss_pred CCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCe
Q 043350 186 YEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPV 265 (1133)
Q Consensus 186 ~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V 265 (1133)
.. .+.+.+|...|+-+-|..+.++|++.|.|+.|++||+... .+..+...|++.|
T Consensus 140 ~G-----------------l~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tq--------hCf~Thvd~r~Ei 194 (888)
T KOG0306|consen 140 EG-----------------LFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQ--------HCFETHVDHRGEI 194 (888)
T ss_pred ee-----------------eEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccc--------eeeeEEecccceE
Confidence 22 3355666667777777778899999999999999999971 4566778899999
Q ss_pred EEEEEeeCCc-EEEEeCCCcEEEEeCCCC---------------------------------------------------
Q 043350 266 LAMIFSSQGD-LWSGGEGGVIKIWPWESI--------------------------------------------------- 293 (1133)
Q Consensus 266 ~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~--------------------------------------------------- 293 (1133)
+++++.+ + +++++.|+.+++|++...
T Consensus 195 w~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~fr 272 (888)
T KOG0306|consen 195 WALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFR 272 (888)
T ss_pred EEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhhee
Confidence 9999987 6 999999999999999210
Q ss_pred --------------------------------------------------ceeeEeCCCCc---eEEEEeecce--EEEc
Q 043350 294 --------------------------------------------------EKSLSLKPEEK---HMAALLVERS--FIDL 318 (1133)
Q Consensus 294 --------------------------------------------------~~~l~~~~~~~---~l~s~~~d~s--~~d~ 318 (1133)
.+.+.+.+.+. .++. ..+++ ...+
T Consensus 273 I~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl 351 (888)
T KOG0306|consen 273 IRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSL 351 (888)
T ss_pred ecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEe
Confidence 00111111000 0000 00000 1111
Q ss_pred cC------------------ce-eeeccccCCCCCeEEEEec-CCceEEEe-----------------------------
Q 043350 319 RA------------------QV-TVNGACSISSTEIKCMLSD-HARARVWC----------------------------- 349 (1133)
Q Consensus 319 ~~------------------~~-~v~~~~~~~~~~~~~l~S~-d~~i~vws----------------------------- 349 (1133)
.. |. .+.++|. +.+..+++|+ .+.+++|+
T Consensus 352 ~~s~~~~p~~~~~~~i~~~GHR~dVRsl~v--S~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~ 429 (888)
T KOG0306|consen 352 ENSGKTSPEADRTSNIEIGGHRSDVRSLCV--SSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVL 429 (888)
T ss_pred ccCCCCCccccccceeeeccchhheeEEEe--ecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEE
Confidence 10 00 1111111 3344444443 34566665
Q ss_pred -cCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccc-------------
Q 043350 350 -AQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRN------------- 415 (1133)
Q Consensus 350 -s~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~------------- 415 (1133)
...|.+.++|+.+..++.+.+.|.+.+++++.+|++.. +++||.|.+|+-|+-....
T Consensus 430 G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g---------~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~ 500 (888)
T KOG0306|consen 430 GTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKG---------FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK 500 (888)
T ss_pred eccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCc---------eEEecCCcEEEEEeEEEEeccCcccceeeeec
Confidence 23456778888888888888889999999999999999 9999999999954422111
Q ss_pred --eeeccCCceEEEEEecCCc------------------------ccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-
Q 043350 416 --AIMGAADAVRRVATRGAGA------------------------FVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG- 467 (1133)
Q Consensus 416 --~~~~~~~~V~~v~~~p~g~------------------------~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~- 467 (1133)
......+.|.++.++|+|. +-+|.-+|.++..|||+ .++||+.|.+|++|-+
T Consensus 501 ~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 501 HTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred cceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence 1223456789999999998 56899999999999999 9999999999999999
Q ss_pred CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCC-CcceeeeccccCeEEeeec--ccceeeecccCCeee
Q 043350 468 NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG-NLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRG 542 (1133)
Q Consensus 468 ~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g-~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~l 542 (1133)
=|.|-+.+.+|...|++ |.|....+++++.||.|+-||-+. +.++.+.+|...|++++.. |++++|+|.|.+||+
T Consensus 581 FGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRl 660 (888)
T KOG0306|consen 581 FGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRL 660 (888)
T ss_pred cchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEe
Confidence 57999999999999999 999999999999999999999764 6788999999999999998 889999999999999
Q ss_pred cccc
Q 043350 543 WTFT 546 (1133)
Q Consensus 543 W~l~ 546 (1133)
|.-.
T Consensus 661 wE~t 664 (888)
T KOG0306|consen 661 WERT 664 (888)
T ss_pred eecc
Confidence 9844
No 13
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=9.1e-29 Score=282.34 Aligned_cols=385 Identities=14% Similarity=0.169 Sum_probs=283.9
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE-ecCCcEEEeeCCCCC
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA-GQECGVRFWNLEDSY 186 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla-s~Dg~VrvWdl~~~~ 186 (1133)
.+.+|+|.+|++....|...+-+.. .+..+..+... . .|.+|. ||||.++| +..+.+.||...+..
T Consensus 61 ialSp~g~lllavdE~g~~~lvs~~----~r~Vlh~f~fk-~-------~v~~i~fSPng~~fav~~gn~lqiw~~P~~~ 128 (893)
T KOG0291|consen 61 IALSPDGTLLLAVDERGRALLVSLL----SRSVLHRFNFK-R-------GVGAIKFSPNGKFFAVGCGNLLQIWHAPGEI 128 (893)
T ss_pred EEeCCCceEEEEEcCCCcEEEEecc----cceeeEEEeec-C-------ccceEEECCCCcEEEEEecceeEEEecCcch
Confidence 6779999999999999988777665 33323233221 2 789999 99999999 999999999987743
Q ss_pred C----cCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCC
Q 043350 187 E----PGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHR 262 (1133)
Q Consensus 187 ~----~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~ 262 (1133)
+ .+.-|. ...+|+..|.++.|+.|.++|++||.|.++++|.++...+ -....+.+|+
T Consensus 129 ~~~~~pFvl~r-------------~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~------~~~~~l~gHk 189 (893)
T KOG0291|consen 129 KNEFNPFVLHR-------------TYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN------LFTYALNGHK 189 (893)
T ss_pred hcccCcceEee-------------eecCCccceeEEEeccCCceEEeccccceEEEEEeccccc------cceEeccCCC
Confidence 3 222222 4567999999999999999999999999999999987222 3355789999
Q ss_pred CCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCC----------------------------------------------ce
Q 043350 263 GPVLAMIFSSQGD-LWSGGEGGVIKIWPWESI----------------------------------------------EK 295 (1133)
Q Consensus 263 ~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~----------------------------------------------~~ 295 (1133)
++|.++-|..+.. |+|.|.||.+.+|..... +.
T Consensus 190 d~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvt 269 (893)
T KOG0291|consen 190 DYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVT 269 (893)
T ss_pred cceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeeccccccee
Confidence 9999999999888 999999999999988721 11
Q ss_pred eeEeCCCCceEEEEeecce--EEEccCceeeeccccCCCCCeEEEEecCCc-eEEEecCCCceeEeecCCCceeEEEecC
Q 043350 296 SLSLKPEEKHMAALLVERS--FIDLRAQVTVNGACSISSTEIKCMLSDHAR-ARVWCAQPLSFSLWDARSKELLKVFNIE 372 (1133)
Q Consensus 296 ~l~~~~~~~~l~s~~~d~s--~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~-i~vwss~d~~I~lWD~~tg~~l~~~~~h 372 (1133)
+..+|+....++++...+. +..+.....+..+.-...+-..+.....|. +-+-++.-|.+-+|+.++...+...++|
T Consensus 270 aa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH 349 (893)
T KOG0291|consen 270 AAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGH 349 (893)
T ss_pred eeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccc
Confidence 2223333333333332222 222222122222111000000111111011 1111234578999999999999999999
Q ss_pred CcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-
Q 043350 373 GHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG- 451 (1133)
Q Consensus 373 ~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg- 451 (1133)
...+++++++|||++ +|+|+.||+|+.|+..+...+ + .|..|+..|+++.|+..|
T Consensus 350 ~~~i~~l~YSpDgq~---------iaTG~eDgKVKvWn~~SgfC~---------v------TFteHts~Vt~v~f~~~g~ 405 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQL---------IATGAEDGKVKVWNTQSGFCF---------V------TFTEHTSGVTAVQFTARGN 405 (893)
T ss_pred ccceeeEEECCCCcE---------EEeccCCCcEEEEeccCceEE---------E------EeccCCCceEEEEEEecCC
Confidence 999999999999999 999999999987775532221 1 256888889999999999
Q ss_pred eEEEEecCCeEEEEeC-CCCeeEEEecC-CcceeE--EecCCCEEEEEecCC-eEEEEeCC-CCcceeeeccccCeEEee
Q 043350 452 MIWSGCTNGLLVQWDG-NGNRVSDILHH-QCAVQC--FCTYGSRMYVGYVSG-YLQILDLD-GNLTASWIAHSSPVLKLA 525 (1133)
Q Consensus 452 ~L~sgs~DG~I~vWd~-~g~~l~~~~~h-~~~V~~--fs~dg~~Lasgs~DG-~I~vwd~~-g~~l~~~~~H~~~V~~l~ 525 (1133)
.+++.+-||+|+.||+ .....+++... .....| ..|.|..+.+|+.|. .|+||+++ |+++..+.||.+||.+++
T Consensus 406 ~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~ 485 (893)
T KOG0291|consen 406 VLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLS 485 (893)
T ss_pred EEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeE
Confidence 9999999999999999 66888888763 223344 556699999999775 79999997 789999999999999999
Q ss_pred ec--ccceeeecccCCeeeccccCC
Q 043350 526 VG--VDHIYSLAAHGGIRGWTFTSP 548 (1133)
Q Consensus 526 fs--~~~L~S~s~Dg~I~lW~l~s~ 548 (1133)
|+ ++.|+|+|+|.+||+|++-..
T Consensus 486 f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 486 FSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred EccccCeEEeccccceEEEEEeecc
Confidence 99 999999999999999998654
No 14
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=3.1e-28 Score=268.64 Aligned_cols=365 Identities=15% Similarity=0.214 Sum_probs=267.0
Q ss_pred CcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeec---cCCCccccccceEEEEE-eCCCCeEE--ecCCcEEE
Q 043350 106 QQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELR---PHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRF 179 (1133)
Q Consensus 106 ~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~---~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~Vrv 179 (1133)
.+.+.|+|||+++||+|.||++.++|-.+ |+. +.+|. +|.+ .|.+|+ +||++.++ +.|.++||
T Consensus 193 V~~VRysPDG~~Fat~gsDgki~iyDGkt---ge~-vg~l~~~~aHkG-------sIfalsWsPDs~~~~T~SaDkt~KI 261 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAGSDGKIYIYDGKT---GEK-VGELEDSDAHKG-------SIFALSWSPDSTQFLTVSADKTIKI 261 (603)
T ss_pred eeeEEECCCCCeEEEecCCccEEEEcCCC---ccE-EEEecCCCCccc-------cEEEEEECCCCceEEEecCCceEEE
Confidence 34488999999999999999999999875 766 77887 8888 999999 99998888 99999999
Q ss_pred eeCCC--CCCcCcCCC----------------------cc---ccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeC
Q 043350 180 WNLED--SYEPGAGIG----------------------GR---VRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHK 232 (1133)
Q Consensus 180 Wdl~~--~~~~~~gh~----------------------~~---v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~ 232 (1133)
||+.+ ...++.--. +. +.+++.. .+.+..+|..+|++|+.++++++|++|+.
T Consensus 262 WdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~-~~~~i~GHnK~ITaLtv~~d~~~i~Sgsy 340 (603)
T KOG0318|consen 262 WDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPS-VLKVISGHNKSITALTVSPDGKTIYSGSY 340 (603)
T ss_pred EEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCC-hhheecccccceeEEEEcCCCCEEEeecc
Confidence 99876 221111000 00 1134444 56778899999999999999999999999
Q ss_pred CCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCCCC----ceeeEeCCCCceEEE
Q 043350 233 DGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWESI----EKSLSLKPEEKHMAA 308 (1133)
Q Consensus 233 Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~~~----~~~l~~~~~~~~l~s 308 (1133)
||.|.-|+...+.. ....-.+|...|.+++-+..+.|+|+|.|.++++-++... ...+.+....+-+++
T Consensus 341 DG~I~~W~~~~g~~-------~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav 413 (603)
T KOG0318|consen 341 DGHINSWDSGSGTS-------DRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAV 413 (603)
T ss_pred CceEEEEecCCccc-------cccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEE
Confidence 99999999986222 1112278999999999987777999999999999988541 111111111111111
Q ss_pred EeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCcc
Q 043350 309 LLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQP 388 (1133)
Q Consensus 309 ~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~ 388 (1133)
..++..+++++...+.+.. ....+.... -.-...+++++|++..
T Consensus 414 ----------------------~~d~~~avv~~~~~iv~l~------------~~~~~~~~~-~~y~~s~vAv~~~~~~- 457 (603)
T KOG0318|consen 414 ----------------------LSDGGTAVVACISDIVLLQ------------DQTKVSSIP-IGYESSAVAVSPDGSE- 457 (603)
T ss_pred ----------------------cCCCCEEEEEecCcEEEEe------------cCCcceeec-cccccceEEEcCCCCE-
Confidence 1122233444433333332 111111221 2234568999999999
Q ss_pred ccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC
Q 043350 389 VEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG 467 (1133)
Q Consensus 389 ~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~ 467 (1133)
++.|+.|++++.+... +.. ..+...+..|...|+++++|||+ +|++|...+.+.+||.
T Consensus 458 --------vaVGG~Dgkvhvysl~------g~~-------l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~ 516 (603)
T KOG0318|consen 458 --------VAVGGQDGKVHVYSLS------GDE-------LKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDV 516 (603)
T ss_pred --------EEEecccceEEEEEec------CCc-------ccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEc
Confidence 9999999998622111 000 00112246788999999999999 9999999999999999
Q ss_pred CCCe--eEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCC--CcceeeeccccCeEEeeec-ccceeeecccCCe
Q 043350 468 NGNR--VSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG--NLTASWIAHSSPVLKLAVG-VDHIYSLAAHGGI 540 (1133)
Q Consensus 468 ~g~~--l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g--~~l~~~~~H~~~V~~l~fs-~~~L~S~s~Dg~I 540 (1133)
.... ...+.-|...|.| |+|+..++|+|+.|-.|.||+++. +.+....+|...|+.|.|- ...|+|.|.|..|
T Consensus 517 ~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~i 596 (603)
T KOG0318|consen 517 ASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANI 596 (603)
T ss_pred ccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCccee
Confidence 5432 3334459999999 999999999999999999999984 3455566899999999999 8999999999999
Q ss_pred eecccc
Q 043350 541 RGWTFT 546 (1133)
Q Consensus 541 ~lW~l~ 546 (1133)
++|++.
T Consensus 597 K~W~v~ 602 (603)
T KOG0318|consen 597 KVWNVT 602 (603)
T ss_pred EEeccc
Confidence 999974
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=7.6e-29 Score=256.21 Aligned_cols=289 Identities=16% Similarity=0.208 Sum_probs=236.6
Q ss_pred eeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEE
Q 043350 142 CLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCL 218 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~l 218 (1133)
..+|++|.. .|.++. ++|++.++ |.||.+.|||.-+..+. |. ......=|+.+
T Consensus 48 rr~LkGH~~-------Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~---ha--------------ipl~s~WVMtC 103 (343)
T KOG0286|consen 48 RRTLKGHLN-------KIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV---HA--------------IPLPSSWVMTC 103 (343)
T ss_pred EEEeccccc-------ceeeeEecCCcCeEEeeccCCeEEEEEcccccce---eE--------------EecCceeEEEE
Confidence 467999999 999999 99999888 99999999997663322 11 22334469999
Q ss_pred EEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCCCCceeeE
Q 043350 219 MVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWESIEKSLS 298 (1133)
Q Consensus 219 a~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~~~~~~l~ 298 (1133)
+|+|.++.+|.|+.|....||++...+. ....+....+.+|++.+.|+.|.+|++|+|+|.|.++.+||++++.....
T Consensus 104 A~sPSg~~VAcGGLdN~Csiy~ls~~d~--~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~ 181 (343)
T KOG0286|consen 104 AYSPSGNFVACGGLDNKCSIYPLSTRDA--EGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQV 181 (343)
T ss_pred EECCCCCeEEecCcCceeEEEecccccc--cccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEE
Confidence 9999999999999999999999985322 12224455789999999999999988899999999999999999766666
Q ss_pred eCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeE
Q 043350 299 LKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENR 378 (1133)
Q Consensus 299 ~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~ 378 (1133)
++.+..-++ .+++. | .+...++++ +.|+..+|||+|.+.++++|.+|...|++
T Consensus 182 f~GH~gDV~-------slsl~-----------p-~~~ntFvSg--------~cD~~aklWD~R~~~c~qtF~ghesDINs 234 (343)
T KOG0286|consen 182 FHGHTGDVM-------SLSLS-----------P-SDGNTFVSG--------GCDKSAKLWDVRSGQCVQTFEGHESDINS 234 (343)
T ss_pred ecCCcccEE-------EEecC-----------C-CCCCeEEec--------ccccceeeeeccCcceeEeecccccccce
Confidence 654443322 22232 2 266677777 88999999999999999999999999999
Q ss_pred EEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEe
Q 043350 379 VDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGC 457 (1133)
Q Consensus 379 l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs 457 (1133)
+.|.|+|.- |++||.|++.+.++.|.-+.+. .|++ .....+|++++||..| +|++|.
T Consensus 235 v~ffP~G~a---------fatGSDD~tcRlyDlRaD~~~a---------~ys~----~~~~~gitSv~FS~SGRlLfagy 292 (343)
T KOG0286|consen 235 VRFFPSGDA---------FATGSDDATCRLYDLRADQELA---------VYSH----DSIICGITSVAFSKSGRLLFAGY 292 (343)
T ss_pred EEEccCCCe---------eeecCCCceeEEEeecCCcEEe---------eecc----CcccCCceeEEEcccccEEEeee
Confidence 999999999 9999999999877766433211 1221 2334578999999999 999999
Q ss_pred cCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEe
Q 043350 458 TNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILD 505 (1133)
Q Consensus 458 ~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd 505 (1133)
.|.++.+||. .++.+..+.+|...|.| .+|||.-|++||.|.+++||.
T Consensus 293 ~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 293 DDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999998 89999999999999999 999999999999999999994
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=6.6e-29 Score=251.12 Aligned_cols=291 Identities=15% Similarity=0.200 Sum_probs=227.5
Q ss_pred CCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE-ecCCcEEEeeCCCCCCcCcCC
Q 043350 115 VEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA-GQECGVRFWNLEDSYEPGAGI 192 (1133)
Q Consensus 115 g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla-s~Dg~VrvWdl~~~~~~~~gh 192 (1133)
.-+|+|+|.|.+||+|...+ |.. ..+++-... .|..+. .++++.|| +....||+||+......
T Consensus 10 ~viLvsA~YDhTIRfWqa~t---G~C-~rTiqh~ds-------qVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~---- 74 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALT---GIC-SRTIQHPDS-------QVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPN---- 74 (311)
T ss_pred ceEEEeccCcceeeeeehhc---CeE-EEEEecCcc-------ceeeEEEcCCcchhhhccCCeeEEEEccCCCCC----
Confidence 45899999999999998774 665 666654444 799999 99999999 88999999999873221
Q ss_pred CccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEee
Q 043350 193 GGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSS 272 (1133)
Q Consensus 193 ~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp 272 (1133)
....+.+|...|+++.|..+|++++|||.||++||||++. ........|..+|++|..+|
T Consensus 75 -----------Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~---------~~~qR~~~~~spVn~vvlhp 134 (311)
T KOG0315|consen 75 -----------PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS---------LSCQRNYQHNSPVNTVVLHP 134 (311)
T ss_pred -----------ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC---------cccchhccCCCCcceEEecC
Confidence 0234668888999999999999999999999999999997 44456667889999999999
Q ss_pred CCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecC
Q 043350 273 QGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQ 351 (1133)
Q Consensus 273 ~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~ 351 (1133)
+.. |++|..+|.|++||+....-...+-|
T Consensus 135 nQteLis~dqsg~irvWDl~~~~c~~~liP-------------------------------------------------- 164 (311)
T KOG0315|consen 135 NQTELISGDQSGNIRVWDLGENSCTHELIP-------------------------------------------------- 164 (311)
T ss_pred CcceEEeecCCCcEEEEEccCCccccccCC--------------------------------------------------
Confidence 977 99999999999999964211111111
Q ss_pred CCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEec
Q 043350 352 PLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRG 431 (1133)
Q Consensus 352 d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p 431 (1133)
.....+.++.+.|+|.+ ++.+...|..+.|..-. +.. .-.+.|
T Consensus 165 -------------------e~~~~i~sl~v~~dgsm---------l~a~nnkG~cyvW~l~~------~~~---~s~l~P 207 (311)
T KOG0315|consen 165 -------------------EDDTSIQSLTVMPDGSM---------LAAANNKGNCYVWRLLN------HQT---ASELEP 207 (311)
T ss_pred -------------------CCCcceeeEEEcCCCcE---------EEEecCCccEEEEEccC------CCc---cccceE
Confidence 11234566677777777 77777777766443211 100 011223
Q ss_pred CCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCCC--CeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeC
Q 043350 432 AGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGNG--NRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDL 506 (1133)
Q Consensus 432 ~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g--~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~ 506 (1133)
--++..|++-+..+.+|||+ +|++++.|.+++||+.++ +.-..+.+|...++. ||.||+||++|+.|+++++|++
T Consensus 208 ~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 208 VHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDL 287 (311)
T ss_pred hhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccc
Confidence 34467889999999999999 999999999999999977 455667889999997 9999999999999999999999
Q ss_pred C-CCcceeeeccccCeEEeeec
Q 043350 507 D-GNLTASWIAHSSPVLKLAVG 527 (1133)
Q Consensus 507 ~-g~~l~~~~~H~~~V~~l~fs 527 (1133)
. ++.+..+.+|..+-.+++..
T Consensus 288 ~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 288 SAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ccCceeeecCCcccccEEEEee
Confidence 8 67889999999887777653
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=5.8e-29 Score=271.41 Aligned_cols=329 Identities=17% Similarity=0.255 Sum_probs=260.5
Q ss_pred eeeccCCCccccccceEEEEE-eCCCC-eEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeecc----CCCC
Q 043350 143 LELRPHPLKETQAGRFLRNIA-CTDTQ-LWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESA----NTSP 214 (1133)
Q Consensus 143 ~~l~~H~~~~~~~g~~V~~v~-s~dg~-lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~----h~s~ 214 (1133)
..++ |.. .|.+.+ .|-.+ +++ +.|.+.|+|++.......... ....+++.+.+ ....
T Consensus 173 kvl~-~~~-------~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q-------~~lrh~~~~~~~s~~~nkd 237 (524)
T KOG0273|consen 173 KVLR-HES-------EVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ-------LVLRHCIREGGKSVPSNKD 237 (524)
T ss_pred eecc-CCC-------ceEEEecCchhhhhhhccCCccceeeeeehhhccccchh-------hhhhhhhhhhcccCCccCC
Confidence 3344 887 888888 77554 666 788999999987511110000 00001111222 2347
Q ss_pred eEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCC
Q 043350 215 TMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESI 293 (1133)
Q Consensus 215 V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~ 293 (1133)
|+||+|+.+|..||+|+.||.++||+..+ .++.++..|++||.+|.|+..|+ |+|++.|+++.+||..++
T Consensus 238 VT~L~Wn~~G~~LatG~~~G~~riw~~~G---------~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g 308 (524)
T KOG0273|consen 238 VTSLDWNNDGTLLATGSEDGEARIWNKDG---------NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG 308 (524)
T ss_pred cceEEecCCCCeEEEeecCcEEEEEecCc---------hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc
Confidence 99999999999999999999999999998 78889999999999999999999 999999999999999663
Q ss_pred --ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEec
Q 043350 294 --EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNI 371 (1133)
Q Consensus 294 --~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~ 371 (1133)
...+.++..+.. -++.. .+ .-++++ +.|+.|+++-+....++++|.+
T Consensus 309 ~~~q~f~~~s~~~l---------DVdW~-------------~~-~~F~ts--------~td~~i~V~kv~~~~P~~t~~G 357 (524)
T KOG0273|consen 309 TVKQQFEFHSAPAL---------DVDWQ-------------SN-DEFATS--------STDGCIHVCKVGEDRPVKTFIG 357 (524)
T ss_pred eEEEeeeeccCCcc---------ceEEe-------------cC-ceEeec--------CCCceEEEEEecCCCcceeeec
Confidence 334444433311 11111 11 123333 7899999999999999999999
Q ss_pred CCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccc---ccccceeeccCCceEEEEEecCCcccCCCCCEEEEEEC
Q 043350 372 EGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFL---QRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLT 448 (1133)
Q Consensus 372 h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~---~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~s 448 (1133)
|.+.|.++.|.|.+.+ |+++|.|++++.|. ....+.+.+|...|..+.++|+|....+.
T Consensus 358 H~g~V~alk~n~tg~L---------LaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~--------- 419 (524)
T KOG0273|consen 358 HHGEVNALKWNPTGSL---------LASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNP--------- 419 (524)
T ss_pred ccCceEEEEECCCCce---------EEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCC---------
Confidence 9999999999999999 99999999999665 45677788899999999999888754432
Q ss_pred CCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCC-CCcceeeeccccCeEE
Q 043350 449 ADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLD-GNLTASWIAHSSPVLK 523 (1133)
Q Consensus 449 pdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~H~~~V~~ 523 (1133)
..+ .+++++.|++|++||. .|.++.+|..|+.+|++ |+|+|+|||+|+.||.|.+|+.. +++++.+.+. +.|..
T Consensus 420 ~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ife 498 (524)
T KOG0273|consen 420 NMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFE 498 (524)
T ss_pred cCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC-CeEEE
Confidence 234 8999999999999999 88999999999999999 99999999999999999999997 5677666654 45999
Q ss_pred eeec--ccceeeecccCCeeeccc
Q 043350 524 LAVG--VDHIYSLAAHGGIRGWTF 545 (1133)
Q Consensus 524 l~fs--~~~L~S~s~Dg~I~lW~l 545 (1133)
|.|+ |.+|..+..|+.+++-|+
T Consensus 499 l~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 499 LCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred EEEcCCCCEEEEEecCCCceEEEe
Confidence 9999 999999999999998775
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=2.8e-28 Score=252.04 Aligned_cols=284 Identities=15% Similarity=0.214 Sum_probs=225.1
Q ss_pred eeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCc
Q 043350 206 FYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGV 284 (1133)
Q Consensus 206 ~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~Dgt 284 (1133)
.++.+|...|+|+.|++|.++|+++|.||.+.|||.-+. ...+.+.-....|..++|+|.|+ ++.|+.|+.
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt--------nK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~ 120 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT--------NKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNK 120 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccc--------cceeEEecCceeEEEEEECCCCCeEEecCcCce
Confidence 367789999999999999999999999999999998752 23444555578999999999999 999999999
Q ss_pred EEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCc
Q 043350 285 IKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKE 364 (1133)
Q Consensus 285 I~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~ 364 (1133)
..||++.+.... +.. .. .-.+..+......|.+.+...+++. ++|.+..+||+.+|+
T Consensus 121 Csiy~ls~~d~~------g~~--~v-----~r~l~gHtgylScC~f~dD~~ilT~----------SGD~TCalWDie~g~ 177 (343)
T KOG0286|consen 121 CSIYPLSTRDAE------GNV--RV-----SRELAGHTGYLSCCRFLDDNHILTG----------SGDMTCALWDIETGQ 177 (343)
T ss_pred eEEEeccccccc------ccc--ee-----eeeecCccceeEEEEEcCCCceEec----------CCCceEEEEEcccce
Confidence 999999742100 000 00 0111222222233333333333332 669999999999999
Q ss_pred eeEEEecCCcceeEEEeCC-CCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEE
Q 043350 365 LLKVFNIEGHIENRVDTQS-VQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTE 443 (1133)
Q Consensus 365 ~l~~~~~h~~~v~~l~~sp-~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~ 443 (1133)
.+..|.+|...|.+++++| +++. +++|+-|++.+.|+.|..... ..|.+|...|+
T Consensus 178 ~~~~f~GH~gDV~slsl~p~~~nt---------FvSg~cD~~aklWD~R~~~c~---------------qtF~ghesDIN 233 (343)
T KOG0286|consen 178 QTQVFHGHTGDVMSLSLSPSDGNT---------FVSGGCDKSAKLWDVRSGQCV---------------QTFEGHESDIN 233 (343)
T ss_pred EEEEecCCcccEEEEecCCCCCCe---------EEecccccceeeeeccCccee---------------Eeecccccccc
Confidence 9999999999999999999 8888 999999999988887633221 11568888999
Q ss_pred EEEECCCC-eEEEEecCCeEEEEeCC-CCeeEEEec--CCcceeE--EecCCCEEEEEecCCeEEEEeC-CCCcceeeec
Q 043350 444 AMVLTADG-MIWSGCTNGLLVQWDGN-GNRVSDILH--HQCAVQC--FCTYGSRMYVGYVSGYLQILDL-DGNLTASWIA 516 (1133)
Q Consensus 444 sl~~spdg-~L~sgs~DG~I~vWd~~-g~~l~~~~~--h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~-~g~~l~~~~~ 516 (1133)
++.|.|+| -+++|++|++.++||+. .+.+..+.. -..+|++ ||..|++|++|+.|.++.|||. +++.+..+.|
T Consensus 234 sv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~G 313 (343)
T KOG0286|consen 234 SVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAG 313 (343)
T ss_pred eEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeec
Confidence 99999999 99999999999999994 466666653 3345666 9999999999999999999996 5788889999
Q ss_pred cccCeEEeeec--ccceeeecccCCeeecc
Q 043350 517 HSSPVLKLAVG--VDHIYSLAAHGGIRGWT 544 (1133)
Q Consensus 517 H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~ 544 (1133)
|...|.+|..+ |--|+|+|+|.++|+|.
T Consensus 314 HeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 314 HENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999 88899999999999995
No 19
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=99.96 E-value=3.2e-30 Score=266.75 Aligned_cols=187 Identities=25% Similarity=0.333 Sum_probs=131.2
Q ss_pred ccccceeEEEEEEEcCeEEEEEecccccChHHH-----------HHHHHHHHHHHHhCccCCCCCccccccccccccccc
Q 043350 693 AIGNKGGVGLRIRVYDRTICFVNCHLAAHLEAV-----------NRRNADYDHIYRNMVFSRSTSTLNSASAGVSTAVNM 761 (1133)
Q Consensus 693 ~~gnKG~v~~r~~~~~~~~~fvn~Hlaa~~~~~-----------~~Rn~d~~~i~~~~~f~~~~~~~~~~~~~~~~~~~~ 761 (1133)
.++.||.+.+|+.|+++.|||||+||.++..|+ ..|.++|..|+.+..
T Consensus 64 kwSRKGfmrtrw~i~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~--------------------- 122 (356)
T PTZ00312 64 GRSRKGFLLLSLRLGTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECS--------------------- 122 (356)
T ss_pred CccccceEEEEEEECCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHh---------------------
Confidence 378999999999999999999999999998774 456677877776531
Q ss_pred ccccCCcccCCCCCCCCCCCCccEEEEEccCCccccCCChHHHHHh-------h------ccCChhHhhccchhHHHHHc
Q 043350 762 MKTSNTTTTLNTEETKPDLAEADMVIFFGDFNYRLFGISYDEARDF-------V------SQRCFDWLREKDQLRAEMKA 828 (1133)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~d~~f~~GDlNyRi~~~~~~~~~~~-------~------~~~~~~~Ll~~DqL~~~~~~ 828 (1133)
..+..+|++|||||||||+++..+.+-.+. + ....|.+|++.|||.+|++.
T Consensus 123 ----------------~~~~~~~~lF~fGDfNyRld~~~~~e~L~ek~Ql~ve~~~g~~~~P~hf~~Lf~~dQl~rE~~~ 186 (356)
T PTZ00312 123 ----------------AFISPSDPLFIFGDFNVRLDGHNLLEWLKEKMQIDVKIEVKRVRAPDRFWELFTNPQTQGEIRR 186 (356)
T ss_pred ----------------hccCCCCcEEEeccceeeeccccHHHHhcccccccccccccccCChHHHHHHhcChhhhHHHhh
Confidence 113457999999999999997555432221 1 13458899999999999985
Q ss_pred -------------CCcccCcccccccCCCCccccCCCC----------------------------------------CC
Q 043350 829 -------------GKVFQGMREAIIRFPPTYKFERHRP----------------------------------------GL 855 (1133)
Q Consensus 829 -------------~~~f~g~~E~~i~F~PTYK~~~~~~----------------------------------------~~ 855 (1133)
.+.|.++.|+||+||||||-..... |+
T Consensus 187 fd~e~q~l~~~va~~s~~eLaE~pI~FpPTYkrva~r~~~~~~~~~a~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~g~ 266 (356)
T PTZ00312 187 FDLELQRLMDVVAQQSGVELAEFAIRFPPTYPRVAERTNTGAQIESAGANVAASVYGVKDVAAKLDNQQRKKAAKDLKGT 266 (356)
T ss_pred hhhhhhhhhhhhhhhcccchhcccccCCCcchhhhhhcCCcchhhhcccccccchhcccccccccccccccchhhhccCc
Confidence 6677799999999999999322100 00
Q ss_pred C---------------CccCCCCcccccccceeeeecCCCCCCccC--------------CCCCcceeeeeeeeeccccC
Q 043350 856 A---------------GYDSGEKKRIPAWCDRIIYRDSRSTPVSEC--------------SLECPVVSSILLYDAVMDVT 906 (1133)
Q Consensus 856 ~---------------~yd~s~k~R~PswcDRIL~~~~~~~~~~~~--------------~~~~~~~~~~~~Y~s~~~~~ 906 (1133)
. -+-.+.+.|+|||||||||....-..+... .-.+--......|.+. ++.
T Consensus 267 ~d~i~~~~~l~~~ta~P~r~~~~~r~pawcdrvl~~~~~~~~~~~~r~~~a~~~~~aa~~~~~~~~~~~~~~Y~s~-~L~ 345 (356)
T PTZ00312 267 ADAILASVVLTRVTAIPHRNYCRDRLPAWCDRVLWNPAGLELMTGDRSRSASPQSAAASKGDQASGQSCRYAYRSI-DLI 345 (356)
T ss_pred cceeeeeeeeecccccCCcchhcccchhhhheeeechhhhhhhcCccccCCCcchhhhccCCcccchhhhheeeee-eee
Confidence 0 011236889999999999987532211100 0001111124568774 788
Q ss_pred CCCCccccceE
Q 043350 907 ESDHKPVHCKF 917 (1133)
Q Consensus 907 ~SDHkPV~a~f 917 (1133)
.+||.||...|
T Consensus 346 htDH~~V~~lF 356 (356)
T PTZ00312 346 HTDHDGVFLLF 356 (356)
T ss_pred eccCccceecC
Confidence 99999999876
No 20
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2.1e-27 Score=271.12 Aligned_cols=389 Identities=12% Similarity=0.132 Sum_probs=291.1
Q ss_pred CCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCc
Q 043350 114 MVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGA 190 (1133)
Q Consensus 114 ~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~ 190 (1133)
.|++++.. .-..|.+||+.+ |.. ...+.--.. .+.++++. +++..+|| ..||.|++|+......
T Consensus 33 ~Gr~va~~-a~E~vn~WdlRt---ge~-~~~l~~~~~-----k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~--- 99 (888)
T KOG0306|consen 33 KGRAVAVS-ALEQVNIWDLRT---GEI-EKKLILLKK-----KAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEI--- 99 (888)
T ss_pred CCcEEEEe-ccccEeEEeeec---chh-hhhhhhhcc-----cceEEEeeccCCcceEEEEecCceEEeeccCCCce---
Confidence 47766652 234578999875 522 111211111 12799999 88888888 7899999999875311
Q ss_pred CCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEE
Q 043350 191 GIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIF 270 (1133)
Q Consensus 191 gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~f 270 (1133)
...+.+|..+|+++.|+..|..|+|||.|+.|.+||+-+. .-...+.||.+.|+.+-|
T Consensus 100 --------------~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E--------~Gl~rL~GHkd~iT~~~F 157 (888)
T KOG0306|consen 100 --------------LITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGE--------EGLFRLRGHKDSITQALF 157 (888)
T ss_pred --------------eeeecccccceEEEEEcccCceEeecCCCccEEEEEeccc--------eeeEEeecchHHHhHHhc
Confidence 4567789999999999999999999999999999998752 235688999999999999
Q ss_pred eeCCc-EEEEeCCCcEEEEeCCCC--ceeeEeCCC--------CceEEEEeecce--EEEcc------------------
Q 043350 271 SSQGD-LWSGGEGGVIKIWPWESI--EKSLSLKPE--------EKHMAALLVERS--FIDLR------------------ 319 (1133)
Q Consensus 271 sp~g~-L~Sgs~DgtI~iWdl~~~--~~~l~~~~~--------~~~l~s~~~d~s--~~d~~------------------ 319 (1133)
....+ |+|+|.|+.||+||+++. ......+.. +..++++..+.. +|.+.
T Consensus 158 ~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G 237 (888)
T KOG0306|consen 158 LNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRG 237 (888)
T ss_pred cCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccc
Confidence 87666 999999999999999873 111111111 111222211111 22210
Q ss_pred --------------------------------------------------------------------------------
Q 043350 320 -------------------------------------------------------------------------------- 319 (1133)
Q Consensus 320 -------------------------------------------------------------------------------- 319 (1133)
T Consensus 238 ~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~i 317 (888)
T KOG0306|consen 238 TFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETI 317 (888)
T ss_pred eeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHhe
Confidence
Q ss_pred --------------Cce------------eeecccc-C----------------CCCCeEEEEecCCceEEEecCCCcee
Q 043350 320 --------------AQV------------TVNGACS-I----------------SSTEIKCMLSDHARARVWCAQPLSFS 356 (1133)
Q Consensus 320 --------------~~~------------~v~~~~~-~----------------~~~~~~~l~S~d~~i~vwss~d~~I~ 356 (1133)
.+. +.+.+.. . ...++..+..++..+.+.++..++++
T Consensus 318 r~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~Sik 397 (888)
T KOG0306|consen 318 RTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIK 397 (888)
T ss_pred echhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEE
Confidence 000 0000000 0 01233444444556667777889999
Q ss_pred EeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccc---cccceeeccCCceEEEEEecCC
Q 043350 357 LWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQ---RSRNAIMGAADAVRRVATRGAG 433 (1133)
Q Consensus 357 lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~---~~~~~~~~~~~~V~~v~~~p~g 433 (1133)
+|+..+.++++++... .+.+..|-|.+.+ ++.|.+.|.+..++. .....+..|.+.+|+++..|++
T Consensus 398 iWn~~t~kciRTi~~~--y~l~~~Fvpgd~~---------Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~ 466 (888)
T KOG0306|consen 398 IWNRDTLKCIRTITCG--YILASKFVPGDRY---------IVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDN 466 (888)
T ss_pred EEEccCcceeEEeccc--cEEEEEecCCCce---------EEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCC
Confidence 9999999999999754 7778999999999 999999999984442 3445567899999999999987
Q ss_pred c-------------------cc-----------------CCCCCEEEEEECCCC-eEEEEecCCeEEEEeCCC-CeeEEE
Q 043350 434 A-------------------FV-----------------DDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGNG-NRVSDI 475 (1133)
Q Consensus 434 ~-------------------~~-----------------~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g-~~l~~~ 475 (1133)
. .. .-...|.|+.+|||| +|+.+--|.+|++|-++. +....+
T Consensus 467 ~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL 546 (888)
T KOG0306|consen 467 KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL 546 (888)
T ss_pred CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee
Confidence 6 00 123468899999999 999999999999999966 777889
Q ss_pred ecCCcceeE--EecCCCEEEEEecCCeEEEEeCC-CCcceeeeccccCeEEeeec--ccceeeecccCCeeeccccCC
Q 043350 476 LHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLD-GNLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTSP 548 (1133)
Q Consensus 476 ~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s~ 548 (1133)
.+|.-+|.| +|||++.|++||.|.+|+||-++ |.+-+++.+|.+.|.+|.|- ...++|||.|+.|+-||-..-
T Consensus 547 YGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kF 624 (888)
T KOG0306|consen 547 YGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF 624 (888)
T ss_pred cccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhh
Confidence 999999999 99999999999999999999998 88999999999999999999 778999999999999996553
No 21
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=1.4e-27 Score=245.87 Aligned_cols=289 Identities=13% Similarity=0.231 Sum_probs=223.8
Q ss_pred eeeeccCCCccccccceEEEEE-eC-CCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEE
Q 043350 142 CLELRPHPLKETQAGRFLRNIA-CT-DTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMC 217 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V~~v~-s~-dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~ 217 (1133)
..++++|++ .|+.++ .+ +.+++. +.|.++.+|++..... ..|.. ...+.+|..-|..
T Consensus 8 ~~tl~gh~d-------~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~-~~G~~-----------~r~~~GHsH~v~d 68 (315)
T KOG0279|consen 8 RGTLEGHTD-------WVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI-KYGVP-----------VRRLTGHSHFVSD 68 (315)
T ss_pred eeeecCCCc-------eEEEEEeecCCCceEEEcccceEEEEEEeccCcc-ccCce-----------eeeeeccceEecc
Confidence 457899999 999999 44 456666 8899999999876311 11111 3346678888999
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCcee
Q 043350 218 LMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKS 296 (1133)
Q Consensus 218 la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~ 296 (1133)
++.+++|++.++|+.|+++++||+.++ +....|.||...|.+++|+++.. |+|||.|.+|++|+.-+..+
T Consensus 69 v~~s~dg~~alS~swD~~lrlWDl~~g--------~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck- 139 (315)
T KOG0279|consen 69 VVLSSDGNFALSASWDGTLRLWDLATG--------ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK- 139 (315)
T ss_pred eEEccCCceEEeccccceEEEEEecCC--------cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE-
Confidence 999999999999999999999999872 44668899999999999999999 99999999999999865321
Q ss_pred eEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcce
Q 043350 297 LSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIE 376 (1133)
Q Consensus 297 l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v 376 (1133)
+....+. ...-+..++++|.....+++++ +.|++|++||+++-++...+.+|...+
T Consensus 140 ~t~~~~~----------------~~~WVscvrfsP~~~~p~Ivs~--------s~DktvKvWnl~~~~l~~~~~gh~~~v 195 (315)
T KOG0279|consen 140 YTIHEDS----------------HREWVSCVRFSPNESNPIIVSA--------SWDKTVKVWNLRNCQLRTTFIGHSGYV 195 (315)
T ss_pred EEEecCC----------------CcCcEEEEEEcCCCCCcEEEEc--------cCCceEEEEccCCcchhhccccccccE
Confidence 1111111 0112444556677777888888 999999999999999999999999999
Q ss_pred eEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEE
Q 043350 377 NRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSG 456 (1133)
Q Consensus 377 ~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sg 456 (1133)
+.+++||||.. +++|++||.+..|+.+....+ . ..++...|.+++|+|+.+.+.+
T Consensus 196 ~t~~vSpDGsl---------casGgkdg~~~LwdL~~~k~l-----------y-----sl~a~~~v~sl~fspnrywL~~ 250 (315)
T KOG0279|consen 196 NTVTVSPDGSL---------CASGGKDGEAMLWDLNEGKNL-----------Y-----SLEAFDIVNSLCFSPNRYWLCA 250 (315)
T ss_pred EEEEECCCCCE---------EecCCCCceEEEEEccCCcee-----------E-----eccCCCeEeeEEecCCceeEee
Confidence 99999999999 999999999976654422221 1 1366778899999999955555
Q ss_pred ecCCeEEEEeCC-CCeeEEEec----C---CcceeE----EecCCCEEEEEecCCeEEEEeCC
Q 043350 457 CTNGLLVQWDGN-GNRVSDILH----H---QCAVQC----FCTYGSRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 457 s~DG~I~vWd~~-g~~l~~~~~----h---~~~V~~----fs~dg~~Lasgs~DG~I~vwd~~ 507 (1133)
..+..|+|||+. +.++.++.. . ...+.| |++||..|++|..|+.|++|.+.
T Consensus 251 at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 251 ATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 566679999994 455555432 1 123344 99999999999999999999864
No 22
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=7e-26 Score=258.89 Aligned_cols=413 Identities=13% Similarity=0.133 Sum_probs=300.3
Q ss_pred CCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCC----eeeeccCCCccccccceEEEEE-eCCCCeEE--
Q 043350 99 PDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPP----CLELRPHPLKETQAGRFLRNIA-CTDTQLWA-- 171 (1133)
Q Consensus 99 ~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~----~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla-- 171 (1133)
...++++ +.|+|+|.++|.|.+ +.+.||.......+..+ ..+..+|-. .|.+|. +.|..+++
T Consensus 95 fk~~v~~---i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fd-------di~si~Ws~DSr~l~~g 163 (893)
T KOG0291|consen 95 FKRGVGA---IKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFD-------DITSIDWSDDSRLLVTG 163 (893)
T ss_pred ecCccce---EEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCcc-------ceeEEEeccCCceEEec
Confidence 3344455 889999999998876 78899976422111111 234567777 899999 99999999
Q ss_pred ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----
Q 043350 172 GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLD----- 246 (1133)
Q Consensus 172 s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~----- 246 (1133)
+.|-++|+|.++...... ++...+|..+|..+-|..+...++|-+.||.+.+|..+....
T Consensus 164 srD~s~rl~~v~~~k~~~---------------~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~ 228 (893)
T KOG0291|consen 164 SRDLSARLFGVDGNKNLF---------------TYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKA 228 (893)
T ss_pred cccceEEEEEeccccccc---------------eEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccc
Confidence 899999999998743321 567788999999999999999999999999999998761100
Q ss_pred -----------C---CCCCccccc--c-----cccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCC-----------
Q 043350 247 -----------D---ANNPFKEGL--S-----WQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESI----------- 293 (1133)
Q Consensus 247 -----------~---~~~~~~~~~--~-----l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~----------- 293 (1133)
. ......... . +......|++.+|++.-+ |++|-..|...++.+...
T Consensus 229 ~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~ 308 (893)
T KOG0291|consen 229 EKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQ 308 (893)
T ss_pred cccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccc
Confidence 0 000000000 1 112247899999999888 999999999999998762
Q ss_pred -ceeeEeCCCCceEEEEeecce---EEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEE
Q 043350 294 -EKSLSLKPEEKHMAALLVERS---FIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVF 369 (1133)
Q Consensus 294 -~~~l~~~~~~~~l~s~~~d~s---~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~ 369 (1133)
+..+.+...+.+++.++..-. +|.+.+...+.....|...-..+..+.|+...+..+.|+.|+|||...|-|+.+|
T Consensus 309 ~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTF 388 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTF 388 (893)
T ss_pred eeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEe
Confidence 334445556777776655422 6666655555555554444444444455555555599999999999999999999
Q ss_pred ecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeecc----CCceEEEEEecCCc-----------
Q 043350 370 NIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGA----ADAVRRVATRGAGA----------- 434 (1133)
Q Consensus 370 ~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~----~~~V~~v~~~p~g~----------- 434 (1133)
..|...|+.+.|+..+.. +++.|.||+|+.|+......+... .....+++..|.|.
T Consensus 389 teHts~Vt~v~f~~~g~~---------llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~ 459 (893)
T KOG0291|consen 389 TEHTSGVTAVQFTARGNV---------LLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFE 459 (893)
T ss_pred ccCCCceEEEEEEecCCE---------EEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEE
Confidence 999999999999999999 999999999997764433322211 12233455554443
Q ss_pred --------------ccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CC-CeeEEEecCCcceeE--EecCCCEEEEE
Q 043350 435 --------------FVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NG-NRVSDILHHQCAVQC--FCTYGSRMYVG 495 (1133)
Q Consensus 435 --------------~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g-~~l~~~~~h~~~V~~--fs~dg~~Lasg 495 (1133)
+.+|.++|.+++|+|++ .|++|+.|.+|++||+ .. ..+.++.. ...+.. |.|+|+.|+++
T Consensus 460 IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i-~sdvl~vsfrPdG~elaVa 538 (893)
T KOG0291|consen 460 IFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI-RSDVLAVSFRPDGKELAVA 538 (893)
T ss_pred EEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee-ccceeEEEEcCCCCeEEEE
Confidence 78999999999999999 9999999999999999 32 34555544 444555 99999999999
Q ss_pred ecCCeEEEEeCCC-Ccce----------------eee----ccccCeEEeeec--ccceeeecccCCeeeccccC
Q 043350 496 YVSGYLQILDLDG-NLTA----------------SWI----AHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 496 s~DG~I~vwd~~g-~~l~----------------~~~----~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s 547 (1133)
+.||.|.+||.+. .... .+. +.....+.+.++ |.+|+++|....|+++++..
T Consensus 539 TldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 539 TLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE 613 (893)
T ss_pred EecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence 9999999999752 1111 111 123578888888 99999999999999999754
No 23
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=2.5e-28 Score=282.71 Aligned_cols=243 Identities=18% Similarity=0.311 Sum_probs=208.2
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-----------C------------CCCCCcccccccccCCCCeEEE
Q 043350 212 TSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTL-----------D------------DANNPFKEGLSWQAHRGPVLAM 268 (1133)
Q Consensus 212 ~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~-----------~------------~~~~~~~~~~~l~gH~~~V~sl 268 (1133)
...++|..|++|+.+||.|-.|..|++|.+.... . .+...-....++.||.++|.++
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 4579999999999999999999999999987311 0 0011112344688999999999
Q ss_pred EEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEE
Q 043350 269 IFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARV 347 (1133)
Q Consensus 269 ~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~v 347 (1133)
.|+|+.+ |+|||+|++||+|.+++
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t------------------------------------------------------- 482 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDT------------------------------------------------------- 482 (707)
T ss_pred eecccccceeeccCCcceeeeeccc-------------------------------------------------------
Confidence 9999999 99999999999998853
Q ss_pred EecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEE
Q 043350 348 WCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRV 427 (1133)
Q Consensus 348 wss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v 427 (1133)
..++-.+.+|..+|+.+.|+|.|-+ ||++|.|++.+.|....
T Consensus 483 ---------------~s~~V~y~GH~~PVwdV~F~P~GyY---------Fatas~D~tArLWs~d~-------------- 524 (707)
T KOG0263|consen 483 ---------------WSCLVIYKGHLAPVWDVQFAPRGYY---------FATASHDQTARLWSTDH-------------- 524 (707)
T ss_pred ---------------ceeEEEecCCCcceeeEEecCCceE---------EEecCCCceeeeeeccc--------------
Confidence 3344556789999999999999999 99999999986554321
Q ss_pred EEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEE
Q 043350 428 ATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQI 503 (1133)
Q Consensus 428 ~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~v 503 (1133)
..|...+.+|...|.|+.|+|+. ++++||.|.+|++||. +|..++.|.+|.++|.+ |||+|++|++|+.||.|++
T Consensus 525 -~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~i 603 (707)
T KOG0263|consen 525 -NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKI 603 (707)
T ss_pred -CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEE
Confidence 22334467888889999999999 9999999999999999 88999999999999999 9999999999999999999
Q ss_pred EeCC-CCcceeeeccccCeEEeeec--ccceeeecccCCeeeccccCC
Q 043350 504 LDLD-GNLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTSP 548 (1133)
Q Consensus 504 wd~~-g~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s~ 548 (1133)
||+. ++++..+.+|.+.|.+|.|+ |..|+++|.|.+|++||+...
T Consensus 604 WDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 604 WDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9998 48999999999999999999 999999999999999997653
No 24
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1e-27 Score=254.58 Aligned_cols=287 Identities=15% Similarity=0.206 Sum_probs=240.0
Q ss_pred eeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcE
Q 043350 207 YESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVI 285 (1133)
Q Consensus 207 ~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI 285 (1133)
...+|..+|+.+-|+|+-.++++++.|++|++||..++ +....++||++.|..|+|+..|. |+|||.|-.+
T Consensus 103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg--------~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~ 174 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG--------ELERSLRGHTDSVFDISFDASGKYLATCSSDLSA 174 (406)
T ss_pred hhhccccceeeeeeccCceEEEEecCCceEEEEEccch--------hhhhhhhccccceeEEEEecCccEEEecCCccch
Confidence 45568889999999999999999999999999999862 34668999999999999999999 9999999999
Q ss_pred EEEeCCCC---ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCC
Q 043350 286 KIWPWESI---EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARS 362 (1133)
Q Consensus 286 ~iWdl~~~---~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~t 362 (1133)
++||.++. .+.+..+.+... .+ +..|.+ ..++|+ +.|.+|+.||..+
T Consensus 175 ~LWd~~~~~~c~ks~~gh~h~vS---------~V-----------~f~P~g--d~ilS~--------srD~tik~We~~t 224 (406)
T KOG0295|consen 175 KLWDFDTFFRCIKSLIGHEHGVS---------SV-----------FFLPLG--DHILSC--------SRDNTIKAWECDT 224 (406)
T ss_pred hheeHHHHHHHHHHhcCccccee---------eE-----------EEEecC--Ceeeec--------ccccceeEEeccc
Confidence 99999873 333333433332 11 111333 456666 8899999999999
Q ss_pred CceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccccc---ccceeeccCCceEEEEEecCCcccCCC
Q 043350 363 KELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQR---SRNAIMGAADAVRRVATRGAGAFVDDT 439 (1133)
Q Consensus 363 g~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~---~~~~~~~~~~~V~~v~~~p~g~~~~h~ 439 (1133)
|-++++|.+|.+.|.-++.+.||.+ +++++.|.+++.|-.. ....+.+|..+|.+++|.|...+.
T Consensus 225 g~cv~t~~~h~ewvr~v~v~~DGti---------~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~--- 292 (406)
T KOG0295|consen 225 GYCVKTFPGHSEWVRMVRVNQDGTI---------IASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYP--- 292 (406)
T ss_pred ceeEEeccCchHhEEEEEecCCeeE---------EEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCc---
Confidence 9999999999999999999999999 9999999999955433 346688899999999998754321
Q ss_pred CCEEEEEECCCC--eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCC-Cccee
Q 043350 440 KRTEAMVLTADG--MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG-NLTAS 513 (1133)
Q Consensus 440 ~~V~sl~~spdg--~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g-~~l~~ 513 (1133)
.|....-+.++ .+.+++.|++|++||+ .|.|+.++.+|...|.. |+|.|+||+++..|+++++||++. .+.++
T Consensus 293 -~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~ 371 (406)
T KOG0295|consen 293 -SISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT 371 (406)
T ss_pred -chhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec
Confidence 12222223334 8999999999999999 77999999999999998 999999999999999999999984 67889
Q ss_pred eeccccCeEEeeec--ccceeeecccCCeeecc
Q 043350 514 WIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWT 544 (1133)
Q Consensus 514 ~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~ 544 (1133)
+.+|..-|+++.|+ ..+++||+-|.++++|.
T Consensus 372 ~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 372 LEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred cCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 99999999999999 77999999999999995
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=4.4e-27 Score=237.96 Aligned_cols=263 Identities=15% Similarity=0.237 Sum_probs=211.4
Q ss_pred eEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC
Q 043350 169 LWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLD 246 (1133)
Q Consensus 169 lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~ 246 (1133)
+|+ |.|.+||+|...+..+.. ......+.|..|...|+++.||+|+. ..||+||++....
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~r-----------------Tiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np 73 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSR-----------------TIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP 73 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEE-----------------EEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC
Confidence 556 899999999988755432 23334567999999999999999886 6899999997333
Q ss_pred CCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeee
Q 043350 247 DANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVN 325 (1133)
Q Consensus 247 ~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~ 325 (1133)
.++.++.+|+..|++|.|..+|+ ++|||+||++||||++..
T Consensus 74 ------~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~-------------------------------- 115 (311)
T KOG0315|consen 74 ------NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL-------------------------------- 115 (311)
T ss_pred ------CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCc--------------------------------
Confidence 57889999999999999999999 999999999999999641
Q ss_pred ccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCc
Q 043350 326 GACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEK 405 (1133)
Q Consensus 326 ~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~ 405 (1133)
.+-+.| .+..+|+++..+|+... |++|..+|.
T Consensus 116 --------------------------------------~~qR~~-~~~spVn~vvlhpnQte---------Lis~dqsg~ 147 (311)
T KOG0315|consen 116 --------------------------------------SCQRNY-QHNSPVNTVVLHPNQTE---------LISGDQSGN 147 (311)
T ss_pred --------------------------------------ccchhc-cCCCCcceEEecCCcce---------EEeecCCCc
Confidence 000112 23467888999998887 899999999
Q ss_pred cccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CC------CeeEEEec
Q 043350 406 PHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NG------NRVSDILH 477 (1133)
Q Consensus 406 i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g------~~l~~~~~ 477 (1133)
|+.|+.+.-... . ....+....|.++...||| +++.+...|+..+|++ .+ .++.+++.
T Consensus 148 irvWDl~~~~c~------------~--~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a 213 (311)
T KOG0315|consen 148 IRVWDLGENSCT------------H--ELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA 213 (311)
T ss_pred EEEEEccCCccc------------c--ccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec
Confidence 976664421100 0 0123344668889999999 9999999999999998 32 35677888
Q ss_pred CCcceeE--EecCCCEEEEEecCCeEEEEeCCC--CcceeeeccccCeEEeeec--ccceeeecccCCeeeccccCCC
Q 043350 478 HQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG--NLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTSPS 549 (1133)
Q Consensus 478 h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g--~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s~~ 549 (1133)
|..-+.. +|||+++||++|+|.+++||+.++ ++...+.+|...|+..+|+ ++||+|++.|+.+++|++....
T Consensus 214 h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 214 HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred ccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 8888775 999999999999999999999997 4556788999999999999 9999999999999999987654
No 26
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.3e-26 Score=235.82 Aligned_cols=287 Identities=15% Similarity=0.165 Sum_probs=224.4
Q ss_pred eeeeccCCCccccccceEEEEE-eCC-CCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEE
Q 043350 142 CLELRPHPLKETQAGRFLRNIA-CTD-TQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMC 217 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V~~v~-s~d-g~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~ 217 (1133)
+..+++|.+ .++.++ +|. |.+|| |.|+.||+|+... ...+... ...-.+|...|..
T Consensus 7 ~~~~~gh~~-------r~W~~awhp~~g~ilAscg~Dk~vriw~~~~-~~s~~ck------------~vld~~hkrsVRs 66 (312)
T KOG0645|consen 7 EQKLSGHKD-------RVWSVAWHPGKGVILASCGTDKAVRIWSTSS-GDSWTCK------------TVLDDGHKRSVRS 66 (312)
T ss_pred EEeecCCCC-------cEEEEEeccCCceEEEeecCCceEEEEecCC-CCcEEEE------------Eeccccchheeee
Confidence 567889998 899999 777 88899 8999999999874 1111000 1122368889999
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCcee
Q 043350 218 LMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKS 296 (1133)
Q Consensus 218 la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~ 296 (1133)
++|+|.|++||+||.|.++.||.-..+ .|+++.++.||...|.|++|+++|. |+|||.|+.|-||.+...
T Consensus 67 vAwsp~g~~La~aSFD~t~~Iw~k~~~------efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded--- 137 (312)
T KOG0645|consen 67 VAWSPHGRYLASASFDATVVIWKKEDG------EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED--- 137 (312)
T ss_pred eeecCCCcEEEEeeccceEEEeecCCC------ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC---
Confidence 999999999999999999999987642 3588889999999999999999999 999999999999987420
Q ss_pred eEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcce
Q 043350 297 LSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIE 376 (1133)
Q Consensus 297 l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v 376 (1133)
..-+++..++.|.+.|
T Consensus 138 ----------------------------------------------------------------dEfec~aVL~~HtqDV 153 (312)
T KOG0645|consen 138 ----------------------------------------------------------------DEFECIAVLQEHTQDV 153 (312)
T ss_pred ----------------------------------------------------------------CcEEEEeeeccccccc
Confidence 1123456788999999
Q ss_pred eEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEE
Q 043350 377 NRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWS 455 (1133)
Q Consensus 377 ~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~s 455 (1133)
..+.|+|...+ |+++|.|++|+.|.... +.-+..... +.+|...|++++|.+.| .|++
T Consensus 154 K~V~WHPt~dl---------L~S~SYDnTIk~~~~~~--------dddW~c~~t----l~g~~~TVW~~~F~~~G~rl~s 212 (312)
T KOG0645|consen 154 KHVIWHPTEDL---------LFSCSYDNTIKVYRDED--------DDDWECVQT----LDGHENTVWSLAFDNIGSRLVS 212 (312)
T ss_pred cEEEEcCCcce---------eEEeccCCeEEEEeecC--------CCCeeEEEE----ecCccceEEEEEecCCCceEEE
Confidence 99999999999 99999999997332210 011111111 45777788888888999 9999
Q ss_pred EecCCeEEEEeCCCCeeEEEe-cCCcceeEEecCCCEEEEEecCCeEEEEeCCCC-------cce-eeeccccCeEEeee
Q 043350 456 GCTNGLLVQWDGNGNRVSDIL-HHQCAVQCFCTYGSRMYVGYVSGYLQILDLDGN-------LTA-SWIAHSSPVLKLAV 526 (1133)
Q Consensus 456 gs~DG~I~vWd~~g~~l~~~~-~h~~~V~~fs~dg~~Lasgs~DG~I~vwd~~g~-------~l~-~~~~H~~~V~~l~f 526 (1133)
++.|++|+||..- ..+. .|+..++.+.-+...|++|+.|+.|+||..... ++. .-.+|...|++|.|
T Consensus 213 ~sdD~tv~Iw~~~----~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w 288 (312)
T KOG0645|consen 213 CSDDGTVSIWRLY----TDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQW 288 (312)
T ss_pred ecCCcceEeeeec----cCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEE
Confidence 9999999999753 1222 266777764444678999999999999986532 222 34579999999999
Q ss_pred c---ccceeeecccCCeeecccc
Q 043350 527 G---VDHIYSLAAHGGIRGWTFT 546 (1133)
Q Consensus 527 s---~~~L~S~s~Dg~I~lW~l~ 546 (1133)
+ ..+|+|+|+||.|++|.+.
T Consensus 289 ~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 289 NPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cCCCCCceeecCCCceEEEEEec
Confidence 9 6899999999999999864
No 27
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=6e-27 Score=255.71 Aligned_cols=307 Identities=18% Similarity=0.282 Sum_probs=237.1
Q ss_pred cCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEeCCCC--CCCCCCCcccccccccC----CCCeEEEEEeeCCc-EEEEeC
Q 043350 210 ANTSPTMCLMVDCGNR-LVWTGHKDGKIRSWKMDQT--LDDANNPFKEGLSWQAH----RGPVLAMIFSSQGD-LWSGGE 281 (1133)
Q Consensus 210 ~h~s~V~~la~spd~~-~LaSgs~Dg~V~vWd~~~~--~~~~~~~~~~~~~l~gH----~~~V~sl~fsp~g~-L~Sgs~ 281 (1133)
.|.++|.|.+|+|-.. ++++|+.|-+.++|++... .+.....++.....-++ ...|++|+|+.+|. |++|+.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 3899999999999555 8999999999999998631 11000111111111222 46899999999999 999999
Q ss_pred CCcEEEEeCCC-CceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeec
Q 043350 282 GGVIKIWPWES-IEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDA 360 (1133)
Q Consensus 282 DgtI~iWdl~~-~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~ 360 (1133)
||.+++|+... ....+..|..+. +.++ ......+++++ +.|+++.+||.
T Consensus 256 ~G~~riw~~~G~l~~tl~~HkgPI-----------~slK-----------Wnk~G~yilS~--------~vD~ttilwd~ 305 (524)
T KOG0273|consen 256 DGEARIWNKDGNLISTLGQHKGPI-----------FSLK-----------WNKKGTYILSG--------GVDGTTILWDA 305 (524)
T ss_pred CcEEEEEecCchhhhhhhccCCce-----------EEEE-----------EcCCCCEEEec--------cCCccEEEEec
Confidence 99999999886 333444443333 2333 44667777788 89999999999
Q ss_pred CCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCC
Q 043350 361 RSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTK 440 (1133)
Q Consensus 361 ~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~ 440 (1133)
.+|+..+.|..|..+-..+.|-.+.. |++.+.|+.|+.... +. -.|.+.+.+|.+
T Consensus 306 ~~g~~~q~f~~~s~~~lDVdW~~~~~----------F~ts~td~~i~V~kv-------~~--------~~P~~t~~GH~g 360 (524)
T KOG0273|consen 306 HTGTVKQQFEFHSAPALDVDWQSNDE----------FATSSTDGCIHVCKV-------GE--------DRPVKTFIGHHG 360 (524)
T ss_pred cCceEEEeeeeccCCccceEEecCce----------EeecCCCceEEEEEe-------cC--------CCcceeeecccC
Confidence 99999999999988866677765553 789999998851110 00 123344678889
Q ss_pred CEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCC---------CEEEEEecCCeEEEEeCC
Q 043350 441 RTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYG---------SRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 441 ~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg---------~~Lasgs~DG~I~vwd~~ 507 (1133)
.|.++.|.|.| +|++++.|++++||+. ++.+...+..|...|.. ++|+| ..|++++.|++|++||+.
T Consensus 361 ~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~ 440 (524)
T KOG0273|consen 361 EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE 440 (524)
T ss_pred ceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc
Confidence 99999999999 9999999999999997 77899999999988888 78765 489999999999999997
Q ss_pred -CCcceeeeccccCeEEeeec--ccceeeecccCCeeeccccCCCCchhhhHHHHhhhhcccccccccceEEEEEEcCCC
Q 043350 508 -GNLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTSPSPLDNIIRSEIAAKEAVYLRRDDVRILVGTWNVGQG 584 (1133)
Q Consensus 508 -g~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s~~~ld~~i~~eL~~r~~eyt~~~~lrI~v~TWNv~~~ 584 (1133)
+.++.+|..|..+|.+|+|+ +++++||+.||.|.+|+........ +...+.-|+-..||.++.
T Consensus 441 ~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~--------------s~~~~~~Ifel~Wn~~G~ 506 (524)
T KOG0273|consen 441 SGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK--------------SYQGTGGIFELCWNAAGD 506 (524)
T ss_pred CCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeE--------------eecCCCeEEEEEEcCCCC
Confidence 78999999999999999999 9999999999999999976532211 123344589999999874
Q ss_pred C
Q 043350 585 R 585 (1133)
Q Consensus 585 ~ 585 (1133)
+
T Consensus 507 k 507 (524)
T KOG0273|consen 507 K 507 (524)
T ss_pred E
Confidence 4
No 28
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=2.8e-27 Score=274.05 Aligned_cols=275 Identities=18% Similarity=0.301 Sum_probs=221.1
Q ss_pred eEEEEE-eCCCCeEE--ecCCcEEEeeCCC-CCCcCcCCCcc-----------ccCCCCC--CCceeeccCCCCeEEEEE
Q 043350 158 FLRNIA-CTDTQLWA--GQECGVRFWNLED-SYEPGAGIGGR-----------VRRGDED--AAPFYESANTSPTMCLMV 220 (1133)
Q Consensus 158 ~V~~v~-s~dg~lla--s~Dg~VrvWdl~~-~~~~~~gh~~~-----------v~~g~~~--~~~~~~~~h~s~V~~la~ 220 (1133)
.++|.. ++|+.++| -.|..|++|.+.. .++.+++.... +.-.|+. .....+.+|.+||+.+.|
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sF 459 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSF 459 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeee
Confidence 677877 99999999 6799999999985 22222111100 1111221 122346789999999999
Q ss_pred eCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEe
Q 043350 221 DCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSL 299 (1133)
Q Consensus 221 spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~ 299 (1133)
+|+.++|+++|.|++||+|.+++ +..+..++||..||+.+.|+|.|- ++|||.|++.++|..+.
T Consensus 460 sPd~rfLlScSED~svRLWsl~t--------~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~------- 524 (707)
T KOG0263|consen 460 SPDRRFLLSCSEDSSVRLWSLDT--------WSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH------- 524 (707)
T ss_pred cccccceeeccCCcceeeeeccc--------ceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc-------
Confidence 99999999999999999999997 355778899999999999999999 99999999999997631
Q ss_pred CCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEE
Q 043350 300 KPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRV 379 (1133)
Q Consensus 300 ~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l 379 (1133)
..+++.|.+|...|.|+
T Consensus 525 ---------------------------------------------------------------~~PlRifaghlsDV~cv 541 (707)
T KOG0263|consen 525 ---------------------------------------------------------------NKPLRIFAGHLSDVDCV 541 (707)
T ss_pred ---------------------------------------------------------------CCchhhhcccccccceE
Confidence 34566778899999999
Q ss_pred EeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEec
Q 043350 380 DTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCT 458 (1133)
Q Consensus 380 ~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~ 458 (1133)
.|+|+..+ +++||.|.+++.|+...... |+ .|.+|.++|.+++|||+| +|++|+.
T Consensus 542 ~FHPNs~Y---------~aTGSsD~tVRlWDv~~G~~-------VR--------iF~GH~~~V~al~~Sp~Gr~LaSg~e 597 (707)
T KOG0263|consen 542 SFHPNSNY---------VATGSSDRTVRLWDVSTGNS-------VR--------IFTGHKGPVTALAFSPCGRYLASGDE 597 (707)
T ss_pred EECCcccc---------cccCCCCceEEEEEcCCCcE-------EE--------EecCCCCceEEEEEcCCCceEeeccc
Confidence 99999999 99999999998777543222 11 146899999999999999 9999999
Q ss_pred CCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCC---C----------------------c
Q 043350 459 NGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG---N----------------------L 510 (1133)
Q Consensus 459 DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g---~----------------------~ 510 (1133)
||.|++||+ +|.++..+.+|.+.|.+ |+.+|..||+|+.|.+|++||+.. . +
T Consensus 598 d~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 677 (707)
T KOG0263|consen 598 DGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLL 677 (707)
T ss_pred CCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcce
Confidence 999999999 77999999999999998 999999999999999999999642 1 3
Q ss_pred ceeeeccccCeEEeeec-ccceeee
Q 043350 511 TASWIAHSSPVLKLAVG-VDHIYSL 534 (1133)
Q Consensus 511 l~~~~~H~~~V~~l~fs-~~~L~S~ 534 (1133)
+.++..-..+|..|.|. .+.++..
T Consensus 678 lgs~~tK~tpv~~l~FtrrNl~L~~ 702 (707)
T KOG0263|consen 678 LGSFYTKNTPVVGLHFTRRNLLLAV 702 (707)
T ss_pred eeeeeecCceEEEEEEeccceeEEe
Confidence 45555666788899998 4444433
No 29
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=1.4e-27 Score=250.62 Aligned_cols=267 Identities=18% Similarity=0.318 Sum_probs=211.0
Q ss_pred ccceEEEEEeCCCCeEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCC
Q 043350 155 AGRFLRNIACTDTQLWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKD 233 (1133)
Q Consensus 155 ~g~~V~~v~s~dg~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~D 233 (1133)
..+.|.++...|+.++. ..|++|+|||...... ..++.+|++.|.|+.|+ .+.|++||.|
T Consensus 196 ~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c-----------------~~~L~GHtGSVLCLqyd--~rviisGSSD 256 (499)
T KOG0281|consen 196 NSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLEC-----------------LKILTGHTGSVLCLQYD--ERVIVSGSSD 256 (499)
T ss_pred cCCceEEEEecchhhhcccccCceEEeccccHHH-----------------HHhhhcCCCcEEeeecc--ceEEEecCCC
Confidence 34589999988888888 8899999999987433 23566888999999994 5699999999
Q ss_pred CeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCCCC-----ceeeEeCCCCceEEE
Q 043350 234 GKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWESI-----EKSLSLKPEEKHMAA 308 (1133)
Q Consensus 234 g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~~~-----~~~l~~~~~~~~l~s 308 (1133)
.+|+|||++++ +++.++.+|...|..+.|+ +|-++|+|.|.+|.+||+... ...+..|-....
T Consensus 257 sTvrvWDv~tg--------e~l~tlihHceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN--- 324 (499)
T KOG0281|consen 257 STVRVWDVNTG--------EPLNTLIHHCEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN--- 324 (499)
T ss_pred ceEEEEeccCC--------chhhHHhhhcceeEEEEEe-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee---
Confidence 99999999872 5577899999999999997 344999999999999999752 111111111111
Q ss_pred EeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCcc
Q 043350 309 LLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQP 388 (1133)
Q Consensus 309 ~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~ 388 (1133)
.+++. -+++++. ++|.+|++|++.++++++++.+|...|.++.+
T Consensus 325 ------vVdfd---------------~kyIVsA--------SgDRTikvW~~st~efvRtl~gHkRGIAClQY------- 368 (499)
T KOG0281|consen 325 ------VVDFD---------------DKYIVSA--------SGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY------- 368 (499)
T ss_pred ------eeccc---------------cceEEEe--------cCCceEEEEeccceeeehhhhcccccceehhc-------
Confidence 22222 2244555 66778888888888887777776654433211
Q ss_pred ccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC
Q 043350 389 VEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG 467 (1133)
Q Consensus 389 ~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~ 467 (1133)
.| .+++|+.|.+|++||+
T Consensus 369 -------------------------------------------------------------r~rlvVSGSSDntIRlwdi 387 (499)
T KOG0281|consen 369 -------------------------------------------------------------RDRLVVSGSSDNTIRLWDI 387 (499)
T ss_pred -------------------------------------------------------------cCeEEEecCCCceEEEEec
Confidence 13 5899999999999999
Q ss_pred -CCCeeEEEecCCcceeEEecCCCEEEEEecCCeEEEEeCCCC----------cceeeeccccCeEEeeecccceeeecc
Q 043350 468 -NGNRVSDILHHQCAVQCFCTYGSRMYVGYVSGYLQILDLDGN----------LTASWIAHSSPVLKLAVGVDHIYSLAA 536 (1133)
Q Consensus 468 -~g~~l~~~~~h~~~V~~fs~dg~~Lasgs~DG~I~vwd~~g~----------~l~~~~~H~~~V~~l~fs~~~L~S~s~ 536 (1133)
.|.+++.+++|..-|.|+--|.+.|++|..||+|+|||+... .+.++..|++.|..+.|+...|++++.
T Consensus 388 ~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssH 467 (499)
T KOG0281|consen 388 ECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSH 467 (499)
T ss_pred cccHHHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccC
Confidence 889999999999999998889999999999999999998631 356678899999999999999999999
Q ss_pred cCCeeeccccCCC
Q 043350 537 HGGIRGWTFTSPS 549 (1133)
Q Consensus 537 Dg~I~lW~l~s~~ 549 (1133)
|.+|.+||+....
T Consensus 468 ddtILiWdFl~~~ 480 (499)
T KOG0281|consen 468 DDTILIWDFLNGP 480 (499)
T ss_pred CCeEEEEEcCCCC
Confidence 9999999986643
No 30
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.95 E-value=4.3e-26 Score=234.85 Aligned_cols=251 Identities=15% Similarity=0.139 Sum_probs=207.8
Q ss_pred eeccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCc
Q 043350 207 YESANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGV 284 (1133)
Q Consensus 207 ~~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~Dgt 284 (1133)
++.+|..-|..++..+ +...+++++.|.++.+|++.... .+.......+.||...|..++.+++|+ .+|+|.|++
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd---~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDD---IKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCc---cccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 4567888999999988 47889999999999999997632 222345678999999999999999999 999999999
Q ss_pred EEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCc
Q 043350 285 IKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKE 364 (1133)
Q Consensus 285 I~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~ 364 (1133)
+++||+. +|+
T Consensus 87 lrlWDl~----------------------------------------------------------------------~g~ 96 (315)
T KOG0279|consen 87 LRLWDLA----------------------------------------------------------------------TGE 96 (315)
T ss_pred EEEEEec----------------------------------------------------------------------CCc
Confidence 9999874 456
Q ss_pred eeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEE
Q 043350 365 LLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEA 444 (1133)
Q Consensus 365 ~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~s 444 (1133)
..+.|.+|...|.+++|+++.++ +++||.|.+++.|+......+ ... -..+..+|.+
T Consensus 97 ~t~~f~GH~~dVlsva~s~dn~q---------ivSGSrDkTiklwnt~g~ck~----------t~~----~~~~~~WVsc 153 (315)
T KOG0279|consen 97 STRRFVGHTKDVLSVAFSTDNRQ---------IVSGSRDKTIKLWNTLGVCKY----------TIH----EDSHREWVSC 153 (315)
T ss_pred EEEEEEecCCceEEEEecCCCce---------eecCCCcceeeeeeecccEEE----------EEe----cCCCcCcEEE
Confidence 66788999999999999999999 999999999985553321111 111 0123678899
Q ss_pred EEECCC--C-eEEEEecCCeEEEEeCCC-CeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCCCcceeeeccc
Q 043350 445 MVLTAD--G-MIWSGCTNGLLVQWDGNG-NRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGNLTASWIAHS 518 (1133)
Q Consensus 445 l~~spd--g-~L~sgs~DG~I~vWd~~g-~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~~l~~~~~H~ 518 (1133)
+.|+|+ . .|++++.|++|++||+.+ +....+.+|+..++. +||||..+++|+.||.+.+||+....-.....|.
T Consensus 154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~ 233 (315)
T KOG0279|consen 154 VRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF 233 (315)
T ss_pred EEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC
Confidence 999998 4 999999999999999966 677788899999987 9999999999999999999999843333456788
Q ss_pred cCeEEeeec-ccceeeecccCCeeeccccCCCCchh
Q 043350 519 SPVLKLAVG-VDHIYSLAAHGGIRGWTFTSPSPLDN 553 (1133)
Q Consensus 519 ~~V~~l~fs-~~~L~S~s~Dg~I~lW~l~s~~~ld~ 553 (1133)
..|.+++|+ +++.+.++.+..|++||+.+...+++
T Consensus 234 ~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~ 269 (315)
T KOG0279|consen 234 DIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEE 269 (315)
T ss_pred CeEeeEEecCCceeEeeccCCceEEEeccchhhhhh
Confidence 999999999 88888889999999999988666554
No 31
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=2.3e-26 Score=242.95 Aligned_cols=279 Identities=17% Similarity=0.277 Sum_probs=220.9
Q ss_pred ccCCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--e
Q 043350 96 CPGPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--G 172 (1133)
Q Consensus 96 ~~~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s 172 (1133)
..||..=+- .+.+.|..++++||+.|++++|||+.+ |+. .++|.||-. .|+.++ ++.-.++. +
T Consensus 147 i~gHlgWVr---~vavdP~n~wf~tgs~DrtikIwDlat---g~L-kltltGhi~-------~vr~vavS~rHpYlFs~g 212 (460)
T KOG0285|consen 147 ISGHLGWVR---SVAVDPGNEWFATGSADRTIKIWDLAT---GQL-KLTLTGHIE-------TVRGVAVSKRHPYLFSAG 212 (460)
T ss_pred hhhccceEE---EEeeCCCceeEEecCCCceeEEEEccc---CeE-EEeecchhh-------eeeeeeecccCceEEEec
Confidence 335544433 378899999999999999999999985 777 899999999 999999 87777766 8
Q ss_pred cCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCc
Q 043350 173 QECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPF 252 (1133)
Q Consensus 173 ~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~ 252 (1133)
.|+.|+.||++...-. -.+.+|.+.|+||+.+|.-..|+||+.|.++||||+++ .
T Consensus 213 edk~VKCwDLe~nkvI-----------------R~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt--------r 267 (460)
T KOG0285|consen 213 EDKQVKCWDLEYNKVI-----------------RHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT--------R 267 (460)
T ss_pred CCCeeEEEechhhhhH-----------------HHhccccceeEEEeccccceeEEecCCcceEEEeeecc--------c
Confidence 9999999999863111 12457899999999999999999999999999999997 1
Q ss_pred ccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCC
Q 043350 253 KEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSIS 331 (1133)
Q Consensus 253 ~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~ 331 (1133)
..+.++.||+.+|.+|.+.|... ++|||.|++|++||+.
T Consensus 268 ~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~---------------------------------------- 307 (460)
T KOG0285|consen 268 ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLR---------------------------------------- 307 (460)
T ss_pred ceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeec----------------------------------------
Confidence 45779999999999999998766 9999999999999874
Q ss_pred CCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccc
Q 043350 332 STEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQ 411 (1133)
Q Consensus 332 ~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~ 411 (1133)
.|+...++..|...+.+++.+|.... +|+++.|..-+ |..
T Consensus 308 ------------------------------agkt~~tlt~hkksvral~lhP~e~~---------fASas~dnik~-w~~ 347 (460)
T KOG0285|consen 308 ------------------------------AGKTMITLTHHKKSVRALCLHPKENL---------FASASPDNIKQ-WKL 347 (460)
T ss_pred ------------------------------cCceeEeeecccceeeEEecCCchhh---------hhccCCcccee-ccC
Confidence 34455566678888999999999888 99999887542 211
Q ss_pred cccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeC-CCCeeEEE---ec-----CCcce
Q 043350 412 RSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDG-NGNRVSDI---LH-----HQCAV 482 (1133)
Q Consensus 412 ~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~-~g~~l~~~---~~-----h~~~V 482 (1133)
. + . .|. ..+.+|+..|++++...||++++|+++|.|.+||. +|-..+.. .. ....|
T Consensus 348 p-------~--g----~f~--~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI 412 (460)
T KOG0285|consen 348 P-------E--G----EFL--QNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGI 412 (460)
T ss_pred C-------c--c----chh--hccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccce
Confidence 0 0 0 011 11457888889999999999999999999999999 56433333 21 12344
Q ss_pred eE--EecCCCEEEEEecCCeEEEEeCCC
Q 043350 483 QC--FCTYGSRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 483 ~~--fs~dg~~Lasgs~DG~I~vwd~~g 508 (1133)
.+ |...|..|++|..|.+|++|.-+.
T Consensus 413 ~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 413 FASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred eEEeecccCceEEeccCCcceEEEeccc
Confidence 44 888999999999999999998653
No 32
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.9e-26 Score=244.86 Aligned_cols=298 Identities=14% Similarity=0.165 Sum_probs=234.8
Q ss_pred cCCCCcccccCCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCC
Q 043350 88 VPVNEDYVCPGPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTD 166 (1133)
Q Consensus 88 ~~p~~~~~~~~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~d 166 (1133)
++|....-..++..++.. +-|.|+--.+++++.|++|++||..+ ++. ...|++|.. .|.+|+ ...
T Consensus 96 pRp~l~~~l~g~r~~vt~---v~~hp~~~~v~~as~d~tikv~D~~t---g~~-e~~LrGHt~-------sv~di~~~a~ 161 (406)
T KOG0295|consen 96 PRPNLVQKLAGHRSSVTR---VIFHPSEALVVSASEDATIKVFDTET---GEL-ERSLRGHTD-------SVFDISFDAS 161 (406)
T ss_pred CCCCchhhhhccccceee---eeeccCceEEEEecCCceEEEEEccc---hhh-hhhhhcccc-------ceeEEEEecC
Confidence 345555555688888777 78899999999999999999999985 666 889999999 899999 888
Q ss_pred CCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q 043350 167 TQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQT 244 (1133)
Q Consensus 167 g~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~ 244 (1133)
|++++ +.|-.+++||.++.+... ..+.+|...|.|++|-|.|.+|++++.|.+|+.|+++++
T Consensus 162 Gk~l~tcSsDl~~~LWd~~~~~~c~----------------ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg 225 (406)
T KOG0295|consen 162 GKYLATCSSDLSAKLWDFDTFFRCI----------------KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG 225 (406)
T ss_pred ccEEEecCCccchhheeHHHHHHHH----------------HHhcCcccceeeEEEEecCCeeeecccccceeEEecccc
Confidence 99999 788889999998732211 123456678999999999999999999999999999973
Q ss_pred CCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCC--ceeeEeCCCCceEEEEeecceEEEccCc
Q 043350 245 LDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESI--EKSLSLKPEEKHMAALLVERSFIDLRAQ 321 (1133)
Q Consensus 245 ~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~--~~~l~~~~~~~~l~s~~~d~s~~d~~~~ 321 (1133)
.++.++.+|...|..++.+.||. ++|||.|.+|++|-+.+. ...+..+..... .+.+...
T Consensus 226 --------~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vE---------ci~wap~ 288 (406)
T KOG0295|consen 226 --------YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVE---------CIAWAPE 288 (406)
T ss_pred --------eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceE---------EEEeccc
Confidence 55789999999999999999999 999999999999999874 333334444333 2222111
Q ss_pred e---eeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEE
Q 043350 322 V---TVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFV 398 (1133)
Q Consensus 322 ~---~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~la 398 (1133)
. .+....+ ....+.+++++ +.|++|++||+.+|.++.++.+|...|..++|+|.|++
T Consensus 289 ~~~~~i~~at~-~~~~~~~l~s~--------SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gky----------- 348 (406)
T KOG0295|consen 289 SSYPSISEATG-STNGGQVLGSG--------SRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKY----------- 348 (406)
T ss_pred ccCcchhhccC-CCCCccEEEee--------cccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeE-----------
Confidence 1 0111111 12245577777 89999999999999999999888888877777776665
Q ss_pred eeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeC-CCCeeEEEec
Q 043350 399 SSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDG-NGNRVSDILH 477 (1133)
Q Consensus 399 sgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~-~g~~l~~~~~ 477 (1133)
|+++.+|+++++||+ +++|+.++..
T Consensus 349 ------------------------------------------------------i~ScaDDktlrvwdl~~~~cmk~~~a 374 (406)
T KOG0295|consen 349 ------------------------------------------------------ILSCADDKTLRVWDLKNLQCMKTLEA 374 (406)
T ss_pred ------------------------------------------------------EEEEecCCcEEEEEeccceeeeccCC
Confidence 677788888999999 6688888989
Q ss_pred CCcceeE--EecCCCEEEEEecCCeEEEEeC
Q 043350 478 HQCAVQC--FCTYGSRMYVGYVSGYLQILDL 506 (1133)
Q Consensus 478 h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~ 506 (1133)
|...|++ |..+..++++|+-|.++++|.-
T Consensus 375 h~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 375 HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CcceeEEEecCCCCceEEeccccceeeeeec
Confidence 8888888 7777779999999999999863
No 33
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=4.8e-26 Score=236.58 Aligned_cols=278 Identities=17% Similarity=0.223 Sum_probs=224.3
Q ss_pred eeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCc
Q 043350 206 FYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGV 284 (1133)
Q Consensus 206 ~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~Dgt 284 (1133)
..+.+|.+.|+++.|+|+|.+||||+.|..|.+|++.+. + +-...+++|.++|..+.|.+++. |+|||.|.+
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd-c------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~ 113 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD-C------ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKT 113 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc-c------cceeeeccccceeEeeeeccCCCEEEEecCCce
Confidence 345678999999999999999999999999999998751 1 33456789999999999999999 999999999
Q ss_pred EEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCc
Q 043350 285 IKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKE 364 (1133)
Q Consensus 285 I~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~ 364 (1133)
|+.||.+++.....+..+... ++.+. ...-...++.++ +.|++++|||+|+.+
T Consensus 114 v~~wD~~tG~~~rk~k~h~~~------------------vNs~~-p~rrg~~lv~Sg--------sdD~t~kl~D~R~k~ 166 (338)
T KOG0265|consen 114 VRGWDAETGKRIRKHKGHTSF------------------VNSLD-PSRRGPQLVCSG--------SDDGTLKLWDIRKKE 166 (338)
T ss_pred EEEEecccceeeehhccccce------------------eeecC-ccccCCeEEEec--------CCCceEEEEeecccc
Confidence 999999986544444333332 22222 123445667777 889999999999999
Q ss_pred eeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEE
Q 043350 365 LLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEA 444 (1133)
Q Consensus 365 ~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~s 444 (1133)
+++++.. ...++++.|...+.. +.+|+-|+.|+.|+.+..... . .+.+|.+.|+.
T Consensus 167 ~~~t~~~-kyqltAv~f~d~s~q---------v~sggIdn~ikvWd~r~~d~~-----------~----~lsGh~DtIt~ 221 (338)
T KOG0265|consen 167 AIKTFEN-KYQLTAVGFKDTSDQ---------VISGGIDNDIKVWDLRKNDGL-----------Y----TLSGHADTITG 221 (338)
T ss_pred hhhcccc-ceeEEEEEecccccc---------eeeccccCceeeeccccCcce-----------E----EeecccCceee
Confidence 9988854 346889999999988 999999999998876522110 0 13566677777
Q ss_pred EEECCCC-eEEEEecCCeEEEEeCC----C-CeeEEEecCCc-----ceeE-EecCCCEEEEEecCCeEEEEeCCC-Ccc
Q 043350 445 MVLTADG-MIWSGCTNGLLVQWDGN----G-NRVSDILHHQC-----AVQC-FCTYGSRMYVGYVSGYLQILDLDG-NLT 511 (1133)
Q Consensus 445 l~~spdg-~L~sgs~DG~I~vWd~~----g-~~l~~~~~h~~-----~V~~-fs~dg~~Lasgs~DG~I~vwd~~g-~~l 511 (1133)
+..+++| .+.+-+.|.++++||.. + .++..+.+|.- -..| ++|++..+.+|+.|..+++||..+ ..+
T Consensus 222 lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~l 301 (338)
T KOG0265|consen 222 LSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRIL 301 (338)
T ss_pred EEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEE
Confidence 7778888 89999999999999983 3 45888877532 3345 999999999999999999999987 678
Q ss_pred eeeeccccCeEEeeec--ccceeeecccCCeee
Q 043350 512 ASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRG 542 (1133)
Q Consensus 512 ~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~l 542 (1133)
..|.||.+.|..+.|+ ...|.+++.|.+|.+
T Consensus 302 yklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 302 YKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred EEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 8999999999999999 889999999999875
No 34
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=4.9e-27 Score=252.31 Aligned_cols=278 Identities=17% Similarity=0.205 Sum_probs=230.7
Q ss_pred ccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEE
Q 043350 153 TQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWT 229 (1133)
Q Consensus 153 ~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaS 229 (1133)
.++.+.|..|. .|+|+.|+ +..|.+.+|+..... ..++...|.++|.++.|++++.+++|
T Consensus 93 NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn-----------------FEtilQaHDs~Vr~m~ws~~g~wmiS 155 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN-----------------FETILQAHDSPVRTMKWSHNGTWMIS 155 (464)
T ss_pred cccccceeeEEEcCCCceeEeecccccEEEecCceee-----------------HHHHhhhhcccceeEEEccCCCEEEE
Confidence 34556888999 89877666 888999999975421 13467789999999999999999999
Q ss_pred EeCCCeEEEEeCCCCCCCCCCCcccccccccCC-CCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEE
Q 043350 230 GHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHR-GPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMA 307 (1133)
Q Consensus 230 gs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~-~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~ 307 (1133)
|+.+|.|++|+... .-++.+++|. ..|++++|+|+.. ++|||+||+|+|||...
T Consensus 156 gD~gG~iKyWqpnm---------nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~--------------- 211 (464)
T KOG0284|consen 156 GDKGGMIKYWQPNM---------NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM--------------- 211 (464)
T ss_pred cCCCceEEecccch---------hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC---------------
Confidence 99999999999886 5566677775 9999999999877 99999999999999742
Q ss_pred EEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCc
Q 043350 308 ALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQ 387 (1133)
Q Consensus 308 s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~ 387 (1133)
.+.-..+.+|+-.|.+++|+|...+
T Consensus 212 -------------------------------------------------------~kee~vL~GHgwdVksvdWHP~kgL 236 (464)
T KOG0284|consen 212 -------------------------------------------------------PKEERVLRGHGWDVKSVDWHPTKGL 236 (464)
T ss_pred -------------------------------------------------------CchhheeccCCCCcceeccCCccce
Confidence 1112345678888999999999999
Q ss_pred cccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEe
Q 043350 388 PVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWD 466 (1133)
Q Consensus 388 ~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd 466 (1133)
|++||+|..|+.|+.++...+ + .+.+|...|.++.|++++ +|++++.|..++++|
T Consensus 237 ---------iasgskDnlVKlWDprSg~cl----------~-----tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~D 292 (464)
T KOG0284|consen 237 ---------IASGSKDNLVKLWDPRSGSCL----------A-----TLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFD 292 (464)
T ss_pred ---------eEEccCCceeEeecCCCcchh----------h-----hhhhccceEEEEEEcCCCCeeEEccCCceEEEEe
Confidence 999999999988887744332 1 135677778888888999 999999999999999
Q ss_pred CC-CCeeEEEecCCcceeE--EecCC-CEEEEEecCCeEEEEeCC-CCcceee-eccccCeEEeeec--ccceeeecccC
Q 043350 467 GN-GNRVSDILHHQCAVQC--FCTYG-SRMYVGYVSGYLQILDLD-GNLTASW-IAHSSPVLKLAVG--VDHIYSLAAHG 538 (1133)
Q Consensus 467 ~~-g~~l~~~~~h~~~V~~--fs~dg-~~Lasgs~DG~I~vwd~~-g~~l~~~-~~H~~~V~~l~fs--~~~L~S~s~Dg 538 (1133)
+. -+.+..+.+|...|++ ++|-. .+|.+|+.||.|..|.+. .+++..+ .+|...|++|+++ |..|++++.|.
T Consensus 293 iR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~ 372 (464)
T KOG0284|consen 293 IRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDR 372 (464)
T ss_pred hhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCc
Confidence 96 4788899999999999 78865 588899999999999987 4555544 5799999999999 99999999999
Q ss_pred CeeeccccCCCC
Q 043350 539 GIRGWTFTSPSP 550 (1133)
Q Consensus 539 ~I~lW~l~s~~~ 550 (1133)
++++|.-..|+.
T Consensus 373 t~rfw~r~rp~d 384 (464)
T KOG0284|consen 373 TVRFWTRNRPGD 384 (464)
T ss_pred ceeeeccCCCCC
Confidence 999998665543
No 35
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=9.4e-26 Score=239.88 Aligned_cols=326 Identities=14% Similarity=0.184 Sum_probs=242.2
Q ss_pred ccCCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--e
Q 043350 96 CPGPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--G 172 (1133)
Q Consensus 96 ~~~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s 172 (1133)
...|..++.+ ++.+|+..++||||.|..-.||+..+ +.. ..++.+|.. .|+++. +.+|.+|| .
T Consensus 60 F~~H~~svFa---vsl~P~~~l~aTGGgDD~AflW~~~~---ge~-~~eltgHKD-------SVt~~~FshdgtlLATGd 125 (399)
T KOG0296|consen 60 FDKHTDSVFA---VSLHPNNNLVATGGGDDLAFLWDIST---GEF-AGELTGHKD-------SVTCCSFSHDGTLLATGD 125 (399)
T ss_pred hhhcCCceEE---EEeCCCCceEEecCCCceEEEEEccC---Ccc-eeEecCCCC-------ceEEEEEccCceEEEecC
Confidence 3467777777 78899999999999999999999874 555 889999999 999999 99999999 7
Q ss_pred cCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCc
Q 043350 173 QECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPF 252 (1133)
Q Consensus 173 ~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~ 252 (1133)
.+|.|+||+..+....+ .....-..+--|.|+|.+.+|+.|+.||.+.+|.+...
T Consensus 126 msG~v~v~~~stg~~~~-----------------~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-------- 180 (399)
T KOG0296|consen 126 MSGKVLVFKVSTGGEQW-----------------KLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-------- 180 (399)
T ss_pred CCccEEEEEcccCceEE-----------------EeecccCceEEEEecccccEEEeecCCCcEEEEECCCc--------
Confidence 79999999998743322 11123346788999999999999999999999999861
Q ss_pred ccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCC
Q 043350 253 KEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSIS 331 (1133)
Q Consensus 253 ~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~ 331 (1133)
...+.+.||..++++=.|.|+|+ ++++..||+|++|++.++...+.....+
T Consensus 181 ~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e---------------------------- 232 (399)
T KOG0296|consen 181 ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE---------------------------- 232 (399)
T ss_pred ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccc----------------------------
Confidence 45678899999999999999999 9999999999999986542222221111
Q ss_pred CCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccc
Q 043350 332 STEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQ 411 (1133)
Q Consensus 332 ~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~ 411 (1133)
....+++.++..+.. +++|+.++.++....
T Consensus 233 -----------------------------------------~~~~~~~~~~~~~~~---------~~~g~~e~~~~~~~~ 262 (399)
T KOG0296|consen 233 -----------------------------------------GLELPCISLNLAGST---------LTKGNSEGVACGVNN 262 (399)
T ss_pred -----------------------------------------cCcCCccccccccce---------eEeccCCccEEEEcc
Confidence 112334444445544 555555555431111
Q ss_pred cccceeeccCCceEEEEEecCCcccCCCCCEEEEEEC---CCC-eEEEEecCCeEEEEeCCCCeeEEEecCCcceeE--E
Q 043350 412 RSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLT---ADG-MIWSGCTNGLLVQWDGNGNRVSDILHHQCAVQC--F 485 (1133)
Q Consensus 412 ~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~s---pdg-~L~sgs~DG~I~vWd~~g~~l~~~~~h~~~V~~--f 485 (1133)
...+.+......+..+ ...+...+.++.+. ..- ..++|+-||+|.|||+....++..-.|..+|+. |
T Consensus 263 ~sgKVv~~~n~~~~~l-------~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w 335 (399)
T KOG0296|consen 263 GSGKVVNCNNGTVPEL-------KPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKW 335 (399)
T ss_pred ccceEEEecCCCCccc-------cccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEE
Confidence 1111100000000000 11223333333333 333 778999999999999988788888888888888 5
Q ss_pred ecCCCEEEEEecCCeEEEEeCC-CCcceeeeccccCeEEeeec--ccceeeecccCCeeecccc
Q 043350 486 CTYGSRMYVGYVSGYLQILDLD-GNLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFT 546 (1133)
Q Consensus 486 s~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~ 546 (1133)
-+ ..+|++++.||.|+.||.. |+++.++.||...|.+++++ .+.++|+|.|++.+++.+.
T Consensus 336 ~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 336 LN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 55 6899999999999999986 78999999999999999999 8999999999999999753
No 36
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=3.9e-27 Score=258.45 Aligned_cols=281 Identities=16% Similarity=0.221 Sum_probs=228.3
Q ss_pred eeeccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCC
Q 043350 206 FYESANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGG 283 (1133)
Q Consensus 206 ~~~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~Dg 283 (1133)
..+.+|...|.++.|.| .+.+|++|+.|+.|+||++.. . .+++.++.+|..+|.+++|+.+|. ++|+|.|+
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-~------~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-D------RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR 280 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEec-C------cceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence 45778999999999999 899999999999999999875 1 177889999999999999999999 99999999
Q ss_pred cEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCC
Q 043350 284 VIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSK 363 (1133)
Q Consensus 284 tI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg 363 (1133)
+|++||++++.....++.+... ..+..++++ ...++++ +.|+.|+.||++++
T Consensus 281 ~lKlwDtETG~~~~~f~~~~~~-------------------~cvkf~pd~-~n~fl~G--------~sd~ki~~wDiRs~ 332 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFHLDKVP-------------------TCVKFHPDN-QNIFLVG--------GSDKKIRQWDIRSG 332 (503)
T ss_pred eeeeeccccceEEEEEecCCCc-------------------eeeecCCCC-CcEEEEe--------cCCCcEEEEeccch
Confidence 9999999987655555544332 112222444 4556666 78999999999999
Q ss_pred ceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEE
Q 043350 364 ELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTE 443 (1133)
Q Consensus 364 ~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~ 443 (1133)
+.++.+..|-+.|..+.|-+++.. +++.+.|++++.|.-+.-..+.. ++ ....-...
T Consensus 333 kvvqeYd~hLg~i~~i~F~~~g~r---------FissSDdks~riWe~~~~v~ik~-------i~-------~~~~hsmP 389 (503)
T KOG0282|consen 333 KVVQEYDRHLGAILDITFVDEGRR---------FISSSDDKSVRIWENRIPVPIKN-------IA-------DPEMHTMP 389 (503)
T ss_pred HHHHHHHhhhhheeeeEEccCCce---------EeeeccCccEEEEEcCCCccchh-------hc-------chhhccCc
Confidence 999999999999999999999999 99999999998665432111110 00 01112345
Q ss_pred EEEECCCC-eEEEEecCCeEEEEeCCC----CeeEEEecCC---cceeE-EecCCCEEEEEecCCeEEEEeCCC-Cccee
Q 043350 444 AMVLTADG-MIWSGCTNGLLVQWDGNG----NRVSDILHHQ---CAVQC-FCTYGSRMYVGYVSGYLQILDLDG-NLTAS 513 (1133)
Q Consensus 444 sl~~spdg-~L~sgs~DG~I~vWd~~g----~~l~~~~~h~---~~V~~-fs~dg~~Lasgs~DG~I~vwd~~g-~~l~~ 513 (1133)
++..+|++ +++.-+.|..|.++.+.- +.-+.+.+|. .++.+ |||||.+|++|+.||.+.+||... +++..
T Consensus 390 ~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~ 469 (503)
T KOG0282|consen 390 CLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSK 469 (503)
T ss_pred ceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhc
Confidence 67778888 899999999999998732 3445666764 45666 999999999999999999999985 78899
Q ss_pred eeccccCeEEeeec---ccceeeecccCCeeecc
Q 043350 514 WIAHSSPVLKLAVG---VDHIYSLAAHGGIRGWT 544 (1133)
Q Consensus 514 ~~~H~~~V~~l~fs---~~~L~S~s~Dg~I~lW~ 544 (1133)
|++|.++++.+.|+ ...++|||.||.|++|+
T Consensus 470 lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 470 LKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99999999999999 78899999999999996
No 37
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.94 E-value=3.1e-25 Score=234.44 Aligned_cols=276 Identities=16% Similarity=0.236 Sum_probs=221.5
Q ss_pred eeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcE
Q 043350 207 YESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVI 285 (1133)
Q Consensus 207 ~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI 285 (1133)
+.++|.+=|.|+++.|.+.+++||+.|++|+|||+.+ -++..++.||-..|..+++++--. |++|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat--------g~LkltltGhi~~vr~vavS~rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT--------GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQV 217 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc--------CeEEEeecchhheeeeeeecccCceEEEecCCCee
Confidence 4568889999999999999999999999999999986 156678999999999999999888 9999999999
Q ss_pred EEEeCCCC--ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCC
Q 043350 286 KIWPWESI--EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSK 363 (1133)
Q Consensus 286 ~iWdl~~~--~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg 363 (1133)
+.||++.. ++....|-.+.. .+++ .+....++++ +.|.++++||+++.
T Consensus 218 KCwDLe~nkvIR~YhGHlS~V~---------~L~l-------------hPTldvl~t~--------grDst~RvWDiRtr 267 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHYHGHLSGVY---------CLDL-------------HPTLDVLVTG--------GRDSTIRVWDIRTR 267 (460)
T ss_pred EEEechhhhhHHHhccccceeE---------EEec-------------cccceeEEec--------CCcceEEEeeeccc
Confidence 99999863 333333333332 2222 2444455666 88999999999999
Q ss_pred ceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEE
Q 043350 364 ELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTE 443 (1133)
Q Consensus 364 ~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~ 443 (1133)
..+.++.+|...|.++.+.|-..+ +++||.|++|+.|+.+....+. .+..|...+.
T Consensus 268 ~~V~~l~GH~~~V~~V~~~~~dpq---------vit~S~D~tvrlWDl~agkt~~---------------tlt~hkksvr 323 (460)
T KOG0285|consen 268 ASVHVLSGHTNPVASVMCQPTDPQ---------VITGSHDSTVRLWDLRAGKTMI---------------TLTHHKKSVR 323 (460)
T ss_pred ceEEEecCCCCcceeEEeecCCCc---------eEEecCCceEEEeeeccCceeE---------------eeecccceee
Confidence 999999999999999999998888 9999999999977755333211 0345677788
Q ss_pred EEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeEEecC-CCEEEEEecCCeEEEEeCCCC-cceee---ec
Q 043350 444 AMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQCFCTY-GSRMYVGYVSGYLQILDLDGN-LTASW---IA 516 (1133)
Q Consensus 444 sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~fs~d-g~~Lasgs~DG~I~vwd~~g~-~l~~~---~~ 516 (1133)
+++.+|.. .+++++.| .|+.|++ .|..++.+.+|..-|++++.. ..++++|+.+|.+..||.+.. -.+.. .+
T Consensus 324 al~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vq 402 (460)
T KOG0285|consen 324 ALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQ 402 (460)
T ss_pred EEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCccccccccccc
Confidence 88888888 78888877 5999999 888888999999999996554 358999999999999998742 11111 11
Q ss_pred -----cccCeEEeeec--ccceeeecccCCeeeccc
Q 043350 517 -----HSSPVLKLAVG--VDHIYSLAAHGGIRGWTF 545 (1133)
Q Consensus 517 -----H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l 545 (1133)
-...|.+.+|+ +..|+||..|.+|++|.=
T Consensus 403 pGSl~sEagI~as~fDktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 403 PGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred CCccccccceeEEeecccCceEEeccCCcceEEEec
Confidence 13568899998 999999999999999973
No 38
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.1e-24 Score=223.46 Aligned_cols=274 Identities=17% Similarity=0.229 Sum_probs=215.6
Q ss_pred ccccCCC-CCEEEEecCCCeEEeccCCCCCCCCCCee-ee-ccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEee
Q 043350 108 HKPFQPM-VEFIGSGGGTGIFKVPSRAAVHPGRPPCL-EL-RPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWN 181 (1133)
Q Consensus 108 ~~~~~p~-g~~lasgs~dg~irlW~~~~~~~g~~~~~-~l-~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWd 181 (1133)
...++|- |..|||+|.|+.||+|+... +..-.+. .+ .+|.. .|+.++ +|.|++|| |.|.++.||.
T Consensus 19 ~~awhp~~g~ilAscg~Dk~vriw~~~~--~~s~~ck~vld~~hkr-------sVRsvAwsp~g~~La~aSFD~t~~Iw~ 89 (312)
T KOG0645|consen 19 SVAWHPGKGVILASCGTDKAVRIWSTSS--GDSWTCKTVLDDGHKR-------SVRSVAWSPHGRYLASASFDATVVIWK 89 (312)
T ss_pred EEEeccCCceEEEeecCCceEEEEecCC--CCcEEEEEeccccchh-------eeeeeeecCCCcEEEEeeccceEEEee
Confidence 3667787 88999999999999999872 1111111 12 25766 999999 99999999 8999999998
Q ss_pred CCC-CCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCccccccccc
Q 043350 182 LED-SYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQA 260 (1133)
Q Consensus 182 l~~-~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~g 260 (1133)
-.. .++. -.++.+|...|.|++|+++|++|||+++|+.|-||.++. ...+.....++.
T Consensus 90 k~~~efec----------------v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de-----ddEfec~aVL~~ 148 (312)
T KOG0645|consen 90 KEDGEFEC----------------VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE-----DDEFECIAVLQE 148 (312)
T ss_pred cCCCceeE----------------EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC-----CCcEEEEeeecc
Confidence 654 1111 224557778999999999999999999999999999985 334678889999
Q ss_pred CCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEE
Q 043350 261 HRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCML 339 (1133)
Q Consensus 261 H~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~ 339 (1133)
|+..|..+.|+|... |+|+|+|.+||+|+-.. +
T Consensus 149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~---------d------------------------------------- 182 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED---------D------------------------------------- 182 (312)
T ss_pred ccccccEEEEcCCcceeEEeccCCeEEEEeecC---------C-------------------------------------
Confidence 999999999999988 99999999999997531 0
Q ss_pred ecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeec
Q 043350 340 SDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMG 419 (1133)
Q Consensus 340 S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~ 419 (1133)
..-++++++.+|...|.+++|++.|.. +++++.|++++.|...
T Consensus 183 ---------------------ddW~c~~tl~g~~~TVW~~~F~~~G~r---------l~s~sdD~tv~Iw~~~------- 225 (312)
T KOG0645|consen 183 ---------------------DDWECVQTLDGHENTVWSLAFDNIGSR---------LVSCSDDGTVSIWRLY------- 225 (312)
T ss_pred ---------------------CCeeEEEEecCccceEEEEEecCCCce---------EEEecCCcceEeeeec-------
Confidence 234567888999999999999999988 9999999999644322
Q ss_pred cCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeCCC-------CeeE-EEecCCcceeE--EecC-
Q 043350 420 AADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGNG-------NRVS-DILHHQCAVQC--FCTY- 488 (1133)
Q Consensus 420 ~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~g-------~~l~-~~~~h~~~V~~--fs~d- 488 (1133)
. ..-.-|...+..+.+. +|.|++++.|+.|++|.... +.+. .-..|...|++ +.|.
T Consensus 226 ---------~---~~~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~ 292 (312)
T KOG0645|consen 226 ---------T---DLSGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKV 292 (312)
T ss_pred ---------c---CcchhcccceEeeeec-ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCC
Confidence 0 0113455677777777 77999999999999997632 1222 23458889999 8884
Q ss_pred CCEEEEEecCCeEEEEeCC
Q 043350 489 GSRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 489 g~~Lasgs~DG~I~vwd~~ 507 (1133)
..+|++|+.||.|++|.+.
T Consensus 293 ~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 293 SNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCceeecCCCceEEEEEec
Confidence 6799999999999999864
No 39
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.93 E-value=6.3e-26 Score=243.86 Aligned_cols=270 Identities=14% Similarity=0.210 Sum_probs=217.4
Q ss_pred cccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCC
Q 043350 107 QHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLE 183 (1133)
Q Consensus 107 ~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~ 183 (1133)
..+...|+|+.|++|+..|.+.||+... -.. ...++.|.. +|+++. +.++.+++ ..+|.||+|+..
T Consensus 100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~---fnF-EtilQaHDs-------~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn 168 (464)
T KOG0284|consen 100 NVVRWTPEGRRLLTGSQSGEFTLWNGTS---FNF-ETILQAHDS-------PVRTMKWSHNGTWMISGDKGGMIKYWQPN 168 (464)
T ss_pred eeEEEcCCCceeEeecccccEEEecCce---eeH-HHHhhhhcc-------cceeEEEccCCCEEEEcCCCceEEecccc
Confidence 3477899999999999999999998752 122 345789999 999999 99998888 567899999976
Q ss_pred C-CCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCC
Q 043350 184 D-SYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHR 262 (1133)
Q Consensus 184 ~-~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~ 262 (1133)
- ..+. +...|...|.|++|+|+...++|+|.||+|+|||... .++-..+.||.
T Consensus 169 mnnVk~------------------~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~--------~kee~vL~GHg 222 (464)
T KOG0284|consen 169 MNNVKI------------------IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM--------PKEERVLRGHG 222 (464)
T ss_pred hhhhHH------------------hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC--------CchhheeccCC
Confidence 4 1111 2223457899999999999999999999999999864 14455779999
Q ss_pred CCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEec
Q 043350 263 GPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSD 341 (1133)
Q Consensus 263 ~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~ 341 (1133)
-.|.+++|+|... |+|||.|..|++||.
T Consensus 223 wdVksvdWHP~kgLiasgskDnlVKlWDp--------------------------------------------------- 251 (464)
T KOG0284|consen 223 WDVKSVDWHPTKGLIASGSKDNLVKLWDP--------------------------------------------------- 251 (464)
T ss_pred CCcceeccCCccceeEEccCCceeEeecC---------------------------------------------------
Confidence 9999999999877 999999988888775
Q ss_pred CCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccC
Q 043350 342 HARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAA 421 (1133)
Q Consensus 342 d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~ 421 (1133)
++|+++.++.+|.+.|..+.|++++.+ |+++|+|..++.++.+....+.
T Consensus 252 -------------------rSg~cl~tlh~HKntVl~~~f~~n~N~---------Llt~skD~~~kv~DiR~mkEl~--- 300 (464)
T KOG0284|consen 252 -------------------RSGSCLATLHGHKNTVLAVKFNPNGNW---------LLTGSKDQSCKVFDIRTMKELF--- 300 (464)
T ss_pred -------------------CCcchhhhhhhccceEEEEEEcCCCCe---------eEEccCCceEEEEehhHhHHHH---
Confidence 677888889999999999999999999 9999999999866665322211
Q ss_pred CceEEEEEecCCcccCCCCCEEEEEECCCC--eEEEEecCCeEEEEeCC-CCeeEEEe-cCCcceeE--EecCCCEEEEE
Q 043350 422 DAVRRVATRGAGAFVDDTKRTEAMVLTADG--MIWSGCTNGLLVQWDGN-GNRVSDIL-HHQCAVQC--FCTYGSRMYVG 495 (1133)
Q Consensus 422 ~~V~~v~~~p~g~~~~h~~~V~sl~~spdg--~L~sgs~DG~I~vWd~~-g~~l~~~~-~h~~~V~~--fs~dg~~Lasg 495 (1133)
.+.+|...++++.++|-. +|.+|+.||.|..|... .+.+..+. +|...|++ ++|-|..|++|
T Consensus 301 ------------~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tg 368 (464)
T KOG0284|consen 301 ------------TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATG 368 (464)
T ss_pred ------------HhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeec
Confidence 023444445555555544 89999999999999995 45555554 59999999 99999999999
Q ss_pred ecCCeEEEEeCC
Q 043350 496 YVSGYLQILDLD 507 (1133)
Q Consensus 496 s~DG~I~vwd~~ 507 (1133)
+.|.++++|...
T Consensus 369 snd~t~rfw~r~ 380 (464)
T KOG0284|consen 369 SNDRTVRFWTRN 380 (464)
T ss_pred CCCcceeeeccC
Confidence 999999999864
No 40
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.3e-24 Score=241.73 Aligned_cols=252 Identities=13% Similarity=0.178 Sum_probs=201.8
Q ss_pred ccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCC
Q 043350 108 HKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLED 184 (1133)
Q Consensus 108 ~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~ 184 (1133)
.+.|+|...+++++-..|.+.||+.++ +..+..+.--.. +|++.. -+..++++ +.|..||||++.+
T Consensus 18 sVd~HPtePw~la~LynG~V~IWnyet----qtmVksfeV~~~-------PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 18 SVDFHPTEPWILAALYNGDVQIWNYET----QTMVKSFEVSEV-------PVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred eeecCCCCceEEEeeecCeeEEEeccc----ceeeeeeeeccc-------chhhheeeeccceEEEecCCceEEEEeccc
Confidence 378899999999999999999999883 332555554444 666665 55566666 8899999999998
Q ss_pred CCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCC
Q 043350 185 SYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGP 264 (1133)
Q Consensus 185 ~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~ 264 (1133)
..+.. .+..|..=|.|++.+|...+++|+|.|-+|++||.+. .+.+.+++.||+..
T Consensus 87 ~ekV~-----------------~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~-------~wa~~qtfeGH~Hy 142 (794)
T KOG0276|consen 87 GEKVK-----------------TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN-------EWACEQTFEGHEHY 142 (794)
T ss_pred ceeeE-----------------EeeccccceeeeeecCCCCeEEecCCccEEEEeeccC-------ceeeeeEEcCcceE
Confidence 54421 3556777899999999999999999999999999986 35677899999999
Q ss_pred eEEEEEeeCCc--EEEEeCCCcEEEEeCCCCcee--eEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEe
Q 043350 265 VLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKS--LSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLS 340 (1133)
Q Consensus 265 V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~--l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S 340 (1133)
|.+++|.|... ++|||.|+|||+|.+...... +..|..+.. +++. .+.++..++++
T Consensus 143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN---------~Vdy-----------y~~gdkpylIs 202 (794)
T KOG0276|consen 143 VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVN---------CVDY-----------YTGGDKPYLIS 202 (794)
T ss_pred EEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcc---------eEEe-----------ccCCCcceEEe
Confidence 99999999876 999999999999999874433 333444443 4444 37788889999
Q ss_pred cCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccc---ccee
Q 043350 341 DHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRS---RNAI 417 (1133)
Q Consensus 341 ~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~---~~~~ 417 (1133)
+ +.|.++++||.++..|++++.+|.+.|..+.|+|.-.+ |++||.||+++.|.... ...+
T Consensus 203 g--------aDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpi---------iisgsEDGTvriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 203 G--------ADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPI---------IISGSEDGTVRIWNSKTYKLEKTL 265 (794)
T ss_pred c--------CCCceEEEeecchHHHHHHhhcccccceEEEecCCCcE---------EEEecCCccEEEecCcceehhhhh
Confidence 9 99999999999999999999999999999999999999 99999999999666442 2223
Q ss_pred eccCCceEEEEEec
Q 043350 418 MGAADAVRRVATRG 431 (1133)
Q Consensus 418 ~~~~~~V~~v~~~p 431 (1133)
.-.-+.+|+++..+
T Consensus 266 n~gleRvW~I~~~k 279 (794)
T KOG0276|consen 266 NYGLERVWCIAAHK 279 (794)
T ss_pred hcCCceEEEEeecC
Confidence 33445666666543
No 41
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=3.4e-24 Score=228.91 Aligned_cols=276 Identities=14% Similarity=0.205 Sum_probs=212.9
Q ss_pred CCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE--eCCCC---eEE-ecCCcEEEeeCCCCCCc
Q 043350 115 VEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA--CTDTQ---LWA-GQECGVRFWNLEDSYEP 188 (1133)
Q Consensus 115 g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~--s~dg~---lla-s~Dg~VrvWdl~~~~~~ 188 (1133)
+++|+||+.||++|+|+.. |+. ...+.+|.+ +|.+++ .++.. ++. |.|.++++|.++.....
T Consensus 115 ~~~IltgsYDg~~riWd~~----Gk~-~~~~~Ght~-------~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~ 182 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLK----GKS-IKTIVGHTG-------PIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK 182 (423)
T ss_pred CceEEEeecCCeeEEEecC----Cce-EEEEecCCc-------ceeeeEEEecCCccceEEEecCCceEEEEEecCchhh
Confidence 8899999999999999998 888 999999999 888777 33332 444 99999999998863222
Q ss_pred CcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCC
Q 043350 189 GAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLD-----------------DANNP 251 (1133)
Q Consensus 189 ~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~-----------------~~~~~ 251 (1133)
... ..+-.+|..+|-|+...++|.++++||.|.+|+||+...... .....
T Consensus 183 ~~~-------------~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~ 249 (423)
T KOG0313|consen 183 VKA-------------LKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGT 249 (423)
T ss_pred hhH-------------HhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccc
Confidence 111 112347888999999999999999999999999999332110 01112
Q ss_pred cccccccccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCC
Q 043350 252 FKEGLSWQAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSIS 331 (1133)
Q Consensus 252 ~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~ 331 (1133)
..++.++.||+++|.+|.|++.+.++|+|.|.+|+.||+.++
T Consensus 250 r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg-------------------------------------- 291 (423)
T KOG0313|consen 250 RTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETG-------------------------------------- 291 (423)
T ss_pred cCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecc--------------------------------------
Confidence 245668899999999999998544999999999999998642
Q ss_pred CCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccc
Q 043350 332 STEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQ 411 (1133)
Q Consensus 332 ~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~ 411 (1133)
....++. ....+++++.+|...+ |++|+.|..++.|+.
T Consensus 292 --------------------------------~~~~~~~-~~ksl~~i~~~~~~~L---------l~~gssdr~irl~DP 329 (423)
T KOG0313|consen 292 --------------------------------GLKSTLT-TNKSLNCISYSPLSKL---------LASGSSDRHIRLWDP 329 (423)
T ss_pred --------------------------------cceeeee-cCcceeEeecccccce---------eeecCCCCceeecCC
Confidence 1111111 1235678888998888 999999999987877
Q ss_pred cccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC--eEEEEecCCeEEEEeC-CCC-eeEEEecCCcceeEEec
Q 043350 412 RSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG--MIWSGCTNGLLVQWDG-NGN-RVSDILHHQCAVQCFCT 487 (1133)
Q Consensus 412 ~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg--~L~sgs~DG~I~vWd~-~g~-~l~~~~~h~~~V~~fs~ 487 (1133)
|.. .+.+.... |.+|...|.++.++|.. .|++|+.|+++++||. ..+ .+..+.+|...|.|..-
T Consensus 330 R~~------~gs~v~~s------~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW 397 (423)
T KOG0313|consen 330 RTG------DGSVVSQS------LIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDW 397 (423)
T ss_pred CCC------CCceeEEe------eecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEec
Confidence 632 22333333 45899999999999988 8999999999999999 444 89999999999999544
Q ss_pred -CCCEEEEEecCCeEEEEeCC
Q 043350 488 -YGSRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 488 -dg~~Lasgs~DG~I~vwd~~ 507 (1133)
.+.+|++|+.|.+|+|+.-.
T Consensus 398 ~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 398 NEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred cCCceEEeccCcceEEEeccc
Confidence 56699999999999998743
No 42
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.93 E-value=4e-26 Score=239.71 Aligned_cols=225 Identities=16% Similarity=0.273 Sum_probs=183.8
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEe
Q 043350 211 NTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWP 289 (1133)
Q Consensus 211 h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWd 289 (1133)
....|+|+.+ |...+++|..|.+|+|||... ......+.||++.|.|+.|. .+ |+|||.|.+|++||
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~--------~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWD 263 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNS--------LECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWD 263 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEecccc--------HHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEe
Confidence 3457999999 456789999999999999986 35577899999999999985 45 99999999998888
Q ss_pred CCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEE
Q 043350 290 WESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVF 369 (1133)
Q Consensus 290 l~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~ 369 (1133)
++ +|++++++
T Consensus 264 v~----------------------------------------------------------------------tge~l~tl 273 (499)
T KOG0281|consen 264 VN----------------------------------------------------------------------TGEPLNTL 273 (499)
T ss_pred cc----------------------------------------------------------------------CCchhhHH
Confidence 74 45666666
Q ss_pred ecCCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccccc------ccceeeccCCceEEEEEecCCcccCCCCCEE
Q 043350 370 NIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQR------SRNAIMGAADAVRRVATRGAGAFVDDTKRTE 443 (1133)
Q Consensus 370 ~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~------~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~ 443 (1133)
-+|...|..+.|+.. + ++++|+|.++..|+.. ...+ +.+|...|+
T Consensus 274 ihHceaVLhlrf~ng--~---------mvtcSkDrsiaVWdm~sps~it~rrV------------------LvGHrAaVN 324 (499)
T KOG0281|consen 274 IHHCEAVLHLRFSNG--Y---------MVTCSKDRSIAVWDMASPTDITLRRV------------------LVGHRAAVN 324 (499)
T ss_pred hhhcceeEEEEEeCC--E---------EEEecCCceeEEEeccCchHHHHHHH------------------Hhhhhhhee
Confidence 666667767766532 4 6777777777533322 1222 344555555
Q ss_pred EEEECCCCeEEEEecCCeEEEEeC-CCCeeEEEecCCcceeEEecCCCEEEEEecCCeEEEEeCC-CCcceeeeccccCe
Q 043350 444 AMVLTADGMIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQCFCTYGSRMYVGYVSGYLQILDLD-GNLTASWIAHSSPV 521 (1133)
Q Consensus 444 sl~~spdg~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~H~~~V 521 (1133)
.+.|+.. ++++++.|.+|++|++ .+.+++++.+|...|.|..-.|+++++|+.|.+|++||++ |.++..++||.+-|
T Consensus 325 vVdfd~k-yIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLv 403 (499)
T KOG0281|consen 325 VVDFDDK-YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV 403 (499)
T ss_pred eeccccc-eEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhh
Confidence 5555433 8999999999999999 6699999999999999999999999999999999999998 78999999999999
Q ss_pred EEeeecccceeeecccCCeeeccccC
Q 043350 522 LKLAVGVDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 522 ~~l~fs~~~L~S~s~Dg~I~lW~l~s 547 (1133)
.++.|+.+.|+||+.||+|++||+..
T Consensus 404 RciRFd~krIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 404 RCIRFDNKRIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred hheeecCceeeeccccceEEEEeccc
Confidence 99999999999999999999999976
No 43
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.93 E-value=2.5e-24 Score=223.84 Aligned_cols=289 Identities=16% Similarity=0.219 Sum_probs=222.4
Q ss_pred CeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEE
Q 043350 141 PCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMC 217 (1133)
Q Consensus 141 ~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~ 217 (1133)
|+..+.+|++ .|..+. .|+|..|| |.|..|.+|+..+..+. -.+..+|.++|+.
T Consensus 39 p~m~l~gh~g-------eI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN----------------~~~lkgHsgAVM~ 95 (338)
T KOG0265|consen 39 PIMLLPGHKG-------EIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN----------------FWVLKGHSGAVME 95 (338)
T ss_pred hhhhcCCCcc-------eEEEEEECCCCCeEeecCCcceEEEEeccccccc----------------eeeeccccceeEe
Confidence 4677889999 999999 99999999 89999999997663222 2245688899999
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCce
Q 043350 218 LMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEK 295 (1133)
Q Consensus 218 la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~ 295 (1133)
+.|.+|+..|++++.|.+|+.||++.+ +....+++|..-|+++.-+.-|. +.||+.||++|+||++....
T Consensus 96 l~~~~d~s~i~S~gtDk~v~~wD~~tG--------~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~ 167 (338)
T KOG0265|consen 96 LHGMRDGSHILSCGTDKTVRGWDAETG--------KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA 167 (338)
T ss_pred eeeccCCCEEEEecCCceEEEEecccc--------eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch
Confidence 999999999999999999999999873 45778899999999999665576 88999999999999985311
Q ss_pred eeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcc
Q 043350 296 SLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHI 375 (1133)
Q Consensus 296 ~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~ 375 (1133)
.-.+ +....+.+ +.+ ....--+.++ +-|+.|++||++.+..+.++.+|.+.
T Consensus 168 ~~t~-~~kyqltA-------v~f-------------~d~s~qv~sg--------gIdn~ikvWd~r~~d~~~~lsGh~Dt 218 (338)
T KOG0265|consen 168 IKTF-ENKYQLTA-------VGF-------------KDTSDQVISG--------GIDNDIKVWDLRKNDGLYTLSGHADT 218 (338)
T ss_pred hhcc-ccceeEEE-------EEe-------------cccccceeec--------cccCceeeeccccCcceEEeecccCc
Confidence 1111 11111111 111 1111223334 67899999999999999999999999
Q ss_pred eeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEE
Q 043350 376 ENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIW 454 (1133)
Q Consensus 376 v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~ 454 (1133)
|+.+..++++.+ +.+-+.|.+++.|+-+.... .-+++.... |...........++++|++ .+-
T Consensus 219 It~lsls~~gs~---------llsnsMd~tvrvwd~rp~~p------~~R~v~if~-g~~hnfeknlL~cswsp~~~~i~ 282 (338)
T KOG0265|consen 219 ITGLSLSRYGSF---------LLSNSMDNTVRVWDVRPFAP------SQRCVKIFQ-GHIHNFEKNLLKCSWSPNGTKIT 282 (338)
T ss_pred eeeEEeccCCCc---------cccccccceEEEEEecccCC------CCceEEEee-cchhhhhhhcceeeccCCCCccc
Confidence 999999999999 99999999999777553221 011121110 1111223335567799999 999
Q ss_pred EEecCCeEEEEeCCC-CeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEe
Q 043350 455 SGCTNGLLVQWDGNG-NRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILD 505 (1133)
Q Consensus 455 sgs~DG~I~vWd~~g-~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd 505 (1133)
+|+.|..+++||... ..+..+.+|.+.|++ |+|....|.+++.|.+|++=.
T Consensus 283 ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 283 AGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred cccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 999999999999966 889999999999999 999999999999999998743
No 44
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=2.7e-24 Score=256.65 Aligned_cols=277 Identities=19% Similarity=0.312 Sum_probs=225.7
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEe
Q 043350 211 NTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWP 289 (1133)
Q Consensus 211 h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWd 289 (1133)
+...|.|+.|+++|+.+++++.|+.+++|+...... .....+.+|...|++++|+|+|+ +++|+.|++|+|||
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc------hhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence 366899999999999999999999999999965111 24556689999999999999999 99999999999999
Q ss_pred CCC---CceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCcee
Q 043350 290 WES---IEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELL 366 (1133)
Q Consensus 290 l~~---~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l 366 (1133)
+.. ..+.+..|..... .+++ .++...++++ +.|++|++||+++++++
T Consensus 232 ~~~~~~~~~~l~gH~~~v~---------~~~f-------------~p~g~~i~Sg--------s~D~tvriWd~~~~~~~ 281 (456)
T KOG0266|consen 232 LKDDGRNLKTLKGHSTYVT---------SVAF-------------SPDGNLLVSG--------SDDGTVRIWDVRTGECV 281 (456)
T ss_pred ccCCCeEEEEecCCCCceE---------EEEe-------------cCCCCEEEEe--------cCCCcEEEEeccCCeEE
Confidence 943 2344444444332 2222 2333677777 88999999999999999
Q ss_pred EEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCC--CEEE
Q 043350 367 KVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTK--RTEA 444 (1133)
Q Consensus 367 ~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~--~V~s 444 (1133)
..+.+|.+.|++++|++++.+ |++++.|+.++.|+....... .+ ..+.++.. .+..
T Consensus 282 ~~l~~hs~~is~~~f~~d~~~---------l~s~s~d~~i~vwd~~~~~~~--------~~-----~~~~~~~~~~~~~~ 339 (456)
T KOG0266|consen 282 RKLKGHSDGISGLAFSPDGNL---------LVSASYDGTIRVWDLETGSKL--------CL-----KLLSGAENSAPVTS 339 (456)
T ss_pred EeeeccCCceEEEEECCCCCE---------EEEcCCCccEEEEECCCCcee--------ee-----ecccCCCCCCceeE
Confidence 999999999999999999999 999999999986665433211 00 01122222 5889
Q ss_pred EEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE-----EecCCCEEEEEecCCeEEEEeCC-CCcceeeec
Q 043350 445 MVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC-----FCTYGSRMYVGYVSGYLQILDLD-GNLTASWIA 516 (1133)
Q Consensus 445 l~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~-----fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~ 516 (1133)
+.|+|++ +|++++.|+.+++|++ .+.++..+.+|...+.| +++.+.++++|+.|+.|++||+. +..+..+.+
T Consensus 340 ~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~ 419 (456)
T KOG0266|consen 340 VQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEG 419 (456)
T ss_pred EEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcC
Confidence 9999999 9999999999999999 57899999998887666 46789999999999999999998 577888999
Q ss_pred c-ccCeEEeeec--ccceeeec--ccCCeeeccc
Q 043350 517 H-SSPVLKLAVG--VDHIYSLA--AHGGIRGWTF 545 (1133)
Q Consensus 517 H-~~~V~~l~fs--~~~L~S~s--~Dg~I~lW~l 545 (1133)
| ...|..+.++ ..++++++ .|+.|++|..
T Consensus 420 h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 420 HSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred CCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 9 8999999999 78888887 7999999974
No 45
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.9e-25 Score=235.12 Aligned_cols=282 Identities=15% Similarity=0.198 Sum_probs=214.1
Q ss_pred eeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcE
Q 043350 207 YESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVI 285 (1133)
Q Consensus 207 ~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI 285 (1133)
++..|...|.-+.||++|++||||+.|.+..+|.+.. ...++...++.+|..+|..+.||||.+ |++|+.|..+
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~-----d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~ 293 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVY-----DVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVL 293 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEec-----CcceeeeeeeecccCceEEEEECCCCCeEEecCchHhe
Confidence 4567899999999999999999999999999999875 334678889999999999999999999 9999999999
Q ss_pred EEEeCCCCceeeEeCCC-CceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCc
Q 043350 286 KIWPWESIEKSLSLKPE-EKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKE 364 (1133)
Q Consensus 286 ~iWdl~~~~~~l~~~~~-~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~ 364 (1133)
++||+.++.....+... +.. +...++ .++..-++++ +.|++|..||+ +|+
T Consensus 294 ~lwDv~tgd~~~~y~~~~~~S------------------~~sc~W--~pDg~~~V~G--------s~dr~i~~wdl-Dgn 344 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSGLGFS------------------VSSCAW--CPDGFRFVTG--------SPDRTIIMWDL-DGN 344 (519)
T ss_pred eeccCCcchhhhhcccCcCCC------------------cceeEE--ccCCceeEec--------CCCCcEEEecC-Ccc
Confidence 99999885433222211 111 111122 2334445555 67777888876 455
Q ss_pred eeEEEecCC-cceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEE
Q 043350 365 LLKVFNIEG-HIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTE 443 (1133)
Q Consensus 365 ~l~~~~~h~-~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~ 443 (1133)
.+...++-. ..|.++++++||.. +++...|..|+.+....... ..+.....+|+
T Consensus 345 ~~~~W~gvr~~~v~dlait~Dgk~---------vl~v~~d~~i~l~~~e~~~d----------------r~lise~~~it 399 (519)
T KOG0293|consen 345 ILGNWEGVRDPKVHDLAITYDGKY---------VLLVTVDKKIRLYNREARVD----------------RGLISEEQPIT 399 (519)
T ss_pred hhhcccccccceeEEEEEcCCCcE---------EEEEecccceeeechhhhhh----------------hccccccCcee
Confidence 555555443 45889999999999 88888888886222110000 00223456788
Q ss_pred EEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcc---ee-EEecC-CCEEEEEecCCeEEEEeCC-CCcceeee
Q 043350 444 AMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCA---VQ-CFCTY-GSRMYVGYVSGYLQILDLD-GNLTASWI 515 (1133)
Q Consensus 444 sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~---V~-~fs~d-g~~Lasgs~DG~I~vwd~~-g~~l~~~~ 515 (1133)
++..|.++ ++++.-.+..|.+||+ +...++.+.+|... |. ||-.. ..++++||.|+.|+||+.. |+++.++.
T Consensus 400 s~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls 479 (519)
T KOG0293|consen 400 SFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS 479 (519)
T ss_pred EEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec
Confidence 88888999 7788888999999999 44677778777543 33 36554 3799999999999999986 79999999
Q ss_pred ccccCeEEeeec---ccceeeecccCCeeeccccC
Q 043350 516 AHSSPVLKLAVG---VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 516 ~H~~~V~~l~fs---~~~L~S~s~Dg~I~lW~l~s 547 (1133)
||...|++|+|+ ..+++|+|+||+||+|....
T Consensus 480 GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 480 GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999999999 77899999999999998654
No 46
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.93 E-value=1.2e-23 Score=232.53 Aligned_cols=277 Identities=22% Similarity=0.349 Sum_probs=218.9
Q ss_pred eccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEE
Q 043350 208 ESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIK 286 (1133)
Q Consensus 208 ~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~ 286 (1133)
+..|.++|.|++|+|++++|++|+.||.|++|++... .....+.+|...+..+.|+|+++ |++++.||.|+
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 76 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG--------ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIR 76 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC--------CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEE
Confidence 3478889999999999999999999999999999861 24556788999999999999998 99999999999
Q ss_pred EEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCcee
Q 043350 287 IWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELL 366 (1133)
Q Consensus 287 iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l 366 (1133)
+|++........+...... +..+...+. ..+++++ ..++.+.+||+.+++.+
T Consensus 77 i~~~~~~~~~~~~~~~~~~------------------i~~~~~~~~--~~~~~~~--------~~~~~i~~~~~~~~~~~ 128 (289)
T cd00200 77 LWDLETGECVRTLTGHTSY------------------VSSVAFSPD--GRILSSS--------SRDKTIKVWDVETGKCL 128 (289)
T ss_pred EEEcCcccceEEEeccCCc------------------EEEEEEcCC--CCEEEEe--------cCCCeEEEEECCCcEEE
Confidence 9999863211111111111 111111122 2333443 55899999999999999
Q ss_pred EEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEE
Q 043350 367 KVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMV 446 (1133)
Q Consensus 367 ~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~ 446 (1133)
..+..|...+.++.++|++.+ +++++.++.++.|+.+.... + ..+..+...+.++.
T Consensus 129 ~~~~~~~~~i~~~~~~~~~~~---------l~~~~~~~~i~i~d~~~~~~-------~--------~~~~~~~~~i~~~~ 184 (289)
T cd00200 129 TTLRGHTDWVNSVAFSPDGTF---------VASSSQDGTIKLWDLRTGKC-------V--------ATLTGHTGEVNSVA 184 (289)
T ss_pred EEeccCCCcEEEEEEcCcCCE---------EEEEcCCCcEEEEEcccccc-------c--------eeEecCccccceEE
Confidence 999989889999999999888 88888899887554331110 0 11235566788999
Q ss_pred ECCCC-eEEEEecCCeEEEEeCC-CCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCC-CCcceeeeccccCe
Q 043350 447 LTADG-MIWSGCTNGLLVQWDGN-GNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLD-GNLTASWIAHSSPV 521 (1133)
Q Consensus 447 ~spdg-~L~sgs~DG~I~vWd~~-g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~H~~~V 521 (1133)
+++++ .+++++.||.|++||.. ++.+..+..|...|.+ +++++.++++++.||.|++||+. ++++..+.+|...|
T Consensus 185 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i 264 (289)
T cd00200 185 FSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSV 264 (289)
T ss_pred ECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcE
Confidence 99999 89999999999999994 6778888788888888 88898888888889999999997 57778888999999
Q ss_pred EEeeec--ccceeeecccCCeeecc
Q 043350 522 LKLAVG--VDHIYSLAAHGGIRGWT 544 (1133)
Q Consensus 522 ~~l~fs--~~~L~S~s~Dg~I~lW~ 544 (1133)
.+++|+ +.+|++++.||.|++|+
T Consensus 265 ~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 265 TSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEECCCCCEEEEecCCCeEEecC
Confidence 999999 58999999999999996
No 47
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.92 E-value=2.7e-23 Score=266.05 Aligned_cols=302 Identities=14% Similarity=0.143 Sum_probs=220.9
Q ss_pred CCeEEeccCCCCCCC-CCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCc-CCCccccC
Q 043350 124 TGIFKVPSRAAVHPG-RPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGA-GIGGRVRR 198 (1133)
Q Consensus 124 dg~irlW~~~~~~~g-~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~-gh~~~v~~ 198 (1133)
+|.+++|+....... ......+..|.. .|.+++ +++|+++| +.|+.|+||++........ .|.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~-------~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~----- 524 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSN-------LVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHY----- 524 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCC-------cEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccccc-----
Confidence 677888876531100 000122344666 899999 99999998 8899999999865221110 011
Q ss_pred CCCCCCceeeccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEee-CCc-
Q 043350 199 GDEDAAPFYESANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSS-QGD- 275 (1133)
Q Consensus 199 g~~~~~~~~~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp-~g~- 275 (1133)
+.....+.++|.+++|++ ++.+|++|+.||+|++||+..+ +.+..+.+|.+.|++++|+| ++.
T Consensus 525 ------~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~--------~~~~~~~~H~~~V~~l~~~p~~~~~ 590 (793)
T PLN00181 525 ------PVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS--------QLVTEMKEHEKRVWSIDYSSADPTL 590 (793)
T ss_pred ------ceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC--------eEEEEecCCCCCEEEEEEcCCCCCE
Confidence 222223456899999988 5789999999999999999751 45667889999999999997 677
Q ss_pred EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCce
Q 043350 276 LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSF 355 (1133)
Q Consensus 276 L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I 355 (1133)
|+||+.||+|++||+.+.
T Consensus 591 L~Sgs~Dg~v~iWd~~~~-------------------------------------------------------------- 608 (793)
T PLN00181 591 LASGSDDGSVKLWSINQG-------------------------------------------------------------- 608 (793)
T ss_pred EEEEcCCCEEEEEECCCC--------------------------------------------------------------
Confidence 999999999999998531
Q ss_pred eEeecCCCceeEEEecCCcceeEEEeC-CCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCc
Q 043350 356 SLWDARSKELLKVFNIEGHIENRVDTQ-SVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGA 434 (1133)
Q Consensus 356 ~lWD~~tg~~l~~~~~h~~~v~~l~~s-p~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~ 434 (1133)
..+..+..+ ..+.++.|+ +++.. +++|+.|++|+.|+.+.... .+ ..
T Consensus 609 --------~~~~~~~~~-~~v~~v~~~~~~g~~---------latgs~dg~I~iwD~~~~~~------~~--------~~ 656 (793)
T PLN00181 609 --------VSIGTIKTK-ANICCVQFPSESGRS---------LAFGSADHKVYYYDLRNPKL------PL--------CT 656 (793)
T ss_pred --------cEEEEEecC-CCeEEEEEeCCCCCE---------EEEEeCCCeEEEEECCCCCc------cc--------eE
Confidence 112222222 346677884 46778 99999999998776542110 00 01
Q ss_pred ccCCCCCEEEEEECCCCeEEEEecCCeEEEEeCC-------CCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEe
Q 043350 435 FVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGN-------GNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILD 505 (1133)
Q Consensus 435 ~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~-------g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd 505 (1133)
+.+|...|.++.|.+...|++++.|++|++||+. ..++..+.+|...+.+ |++++.+|++|+.||+|++|+
T Consensus 657 ~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 657 MIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred ecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 3467778888888744499999999999999984 2578889999988877 999999999999999999999
Q ss_pred CCC-Cccee-------------eeccccCeEEeeec--ccceeeecccCCeeeccc
Q 043350 506 LDG-NLTAS-------------WIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTF 545 (1133)
Q Consensus 506 ~~g-~~l~~-------------~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l 545 (1133)
... .++.. ...|...|.+++|+ +..|++++.||.|++|++
T Consensus 737 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 737 KAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 753 22211 22355679999998 889999999999999985
No 48
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=1.3e-23 Score=237.67 Aligned_cols=375 Identities=17% Similarity=0.204 Sum_probs=257.2
Q ss_pred CCCEEEEecCCCeEEeccCCCCCC-CCCCeee--------e--ccCCCccccccceEEEEE---eCCCCeEE--ecCCcE
Q 043350 114 MVEFIGSGGGTGIFKVPSRAAVHP-GRPPCLE--------L--RPHPLKETQAGRFLRNIA---CTDTQLWA--GQECGV 177 (1133)
Q Consensus 114 ~g~~lasgs~dg~irlW~~~~~~~-g~~~~~~--------l--~~H~~~~~~~g~~V~~v~---s~dg~lla--s~Dg~V 177 (1133)
..++|+.|+.+|+|||++..+.+. +..|... + ..|...+.+-+.+--+|+ .+..+.+. ..|..+
T Consensus 269 s~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSl 348 (1080)
T KOG1408|consen 269 SSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSL 348 (1080)
T ss_pred ecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceE
Confidence 567999999999999999765422 2221110 0 112222222333444555 44555555 899999
Q ss_pred EEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC-----------CCCEEEEEeCCCeEEEEeCCCCCC
Q 043350 178 RFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC-----------GNRLVWTGHKDGKIRSWKMDQTLD 246 (1133)
Q Consensus 178 rvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp-----------d~~~LaSgs~Dg~V~vWd~~~~~~ 246 (1133)
.|||+++..+..+.|. ..-|...|+.+.--| -...+.|++.|++||+|++.....
T Consensus 349 YvWDvrD~~kvgk~~s--------------~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctn 414 (1080)
T KOG1408|consen 349 YVWDVRDVNKVGKCSS--------------MLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTN 414 (1080)
T ss_pred EEEeccccccccceee--------------eeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccc
Confidence 9999998655544333 222333333333222 123489999999999999976321
Q ss_pred CCC---CC-------------------------c-ccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCcee
Q 043350 247 DAN---NP-------------------------F-KEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKS 296 (1133)
Q Consensus 247 ~~~---~~-------------------------~-~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~ 296 (1133)
.+. +. + +......+-+..|.+++.+|+|+ |++|...|+++|+++......
T Consensus 415 n~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~ 494 (1080)
T KOG1408|consen 415 NQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYT 494 (1080)
T ss_pred cceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhh
Confidence 100 00 0 00011223356799999999999 999999999999999874333
Q ss_pred eEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecC-CCceeEEEecCCcc
Q 043350 297 LSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDAR-SKELLKVFNIEGHI 375 (1133)
Q Consensus 297 l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~-tg~~l~~~~~h~~~ 375 (1133)
+....++..+..+ .+. .+.-...+++++ +.|..|+++|+. .-.+++++.+|+..
T Consensus 495 ~~~eAHesEilcL-------eyS----------~p~~~~kLLASa--------srdRlIHV~Dv~rny~l~qtld~HSss 549 (1080)
T KOG1408|consen 495 CFMEAHESEILCL-------EYS----------FPVLTNKLLASA--------SRDRLIHVYDVKRNYDLVQTLDGHSSS 549 (1080)
T ss_pred hheecccceeEEE-------eec----------CchhhhHhhhhc--------cCCceEEEEecccccchhhhhcccccc
Confidence 3333333322211 111 133445678888 899999999997 45677899999999
Q ss_pred eeEEEeCCCCCccccccceEEEEeeCCCCccc-ccccc--ccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-
Q 043350 376 ENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPH-GFLQR--SRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG- 451 (1133)
Q Consensus 376 v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~-~~~~~--~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg- 451 (1133)
|+++.|..++-. +++++++.|..|. ...++ ..+.+..+. -.-....++.++..|..
T Consensus 550 ITsvKFa~~gln-------~~MiscGADksimFr~~qk~~~g~~f~r~t-------------~t~~ktTlYDm~Vdp~~k 609 (1080)
T KOG1408|consen 550 ITSVKFACNGLN-------RKMISCGADKSIMFRVNQKASSGRLFPRHT-------------QTLSKTTLYDMAVDPTSK 609 (1080)
T ss_pred eeEEEEeecCCc-------eEEEeccCchhhheehhccccCceeccccc-------------cccccceEEEeeeCCCcc
Confidence 999999887732 2388999999885 11111 111111111 11223457788888888
Q ss_pred eEEEEecCCeEEEEeC-CCCeeEEEec---CCcceeE--EecCCCEEEEEecCCeEEEEeCC-CCcceeeeccccCeEEe
Q 043350 452 MIWSGCTNGLLVQWDG-NGNRVSDILH---HQCAVQC--FCTYGSRMYVGYVSGYLQILDLD-GNLTASWIAHSSPVLKL 524 (1133)
Q Consensus 452 ~L~sgs~DG~I~vWd~-~g~~l~~~~~---h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~H~~~V~~l 524 (1133)
++++++.|..|+||++ +|+..+.|++ |.+.... +.|.|-|||+.+.|.++.++|.. |+++....||+..|+.|
T Consensus 610 ~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~ 689 (1080)
T KOG1408|consen 610 LVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGV 689 (1080)
T ss_pred eEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeee
Confidence 9999999999999999 7899999987 4344443 88999999999999999999975 78999999999999999
Q ss_pred eec--ccceeeecccCCeeeccccC
Q 043350 525 AVG--VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 525 ~fs--~~~L~S~s~Dg~I~lW~l~s 547 (1133)
.|. .+.|+|++.||.|.+|.+..
T Consensus 690 kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 690 KFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eecccchhheeecCCceEEEEECch
Confidence 999 88999999999999999876
No 49
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=1.2e-23 Score=251.22 Aligned_cols=275 Identities=19% Similarity=0.293 Sum_probs=218.7
Q ss_pred ccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCC
Q 043350 108 HKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLED 184 (1133)
Q Consensus 108 ~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~ 184 (1133)
...|+|+|+++++++.++.+++|+...... .. ..++.+|.. .|..++ ++++++++ +.|++|||||+..
T Consensus 164 ~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~-~~~l~~h~~-------~v~~~~fs~d~~~l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 164 CVDFSPDGRALAAASSDGLIRIWKLEGIKS-NL-LRELSGHTR-------GVSDVAFSPDGSYLLSGSDDKTLRIWDLKD 234 (456)
T ss_pred EEEEcCCCCeEEEccCCCcEEEeecccccc-hh-hcccccccc-------ceeeeEECCCCcEEEEecCCceEEEeeccC
Confidence 478999999999999999999999853211 13 667788998 999999 99999888 8899999999943
Q ss_pred CCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCC
Q 043350 185 SYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGP 264 (1133)
Q Consensus 185 ~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~ 264 (1133)
.... ..++.+|...|+|++|+|+++++++|+.|++|+|||+..+ ++...+.+|.+.
T Consensus 235 ~~~~----------------~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~--------~~~~~l~~hs~~ 290 (456)
T KOG0266|consen 235 DGRN----------------LKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG--------ECVRKLKGHSDG 290 (456)
T ss_pred CCeE----------------EEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC--------eEEEeeeccCCc
Confidence 2111 2345688889999999999999999999999999999962 567799999999
Q ss_pred eEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCC
Q 043350 265 VLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHA 343 (1133)
Q Consensus 265 V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~ 343 (1133)
|++++|+++|. |++++.|+.|++||+.+....
T Consensus 291 is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~----------------------------------------------- 323 (456)
T KOG0266|consen 291 ISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL----------------------------------------------- 323 (456)
T ss_pred eEEEEECCCCCEEEEcCCCccEEEEECCCCcee-----------------------------------------------
Confidence 99999999999 999999999999998642110
Q ss_pred ceEEEecCCCceeEeecCCCceeEEEecCCc--ceeEEEeCCCCCccccccceEEEEeeCCCCccccccccc---cceee
Q 043350 344 RARVWCAQPLSFSLWDARSKELLKVFNIEGH--IENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRS---RNAIM 418 (1133)
Q Consensus 344 ~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~--~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~---~~~~~ 418 (1133)
+++.+..+.. .++.+.|+|++.+ +++++.|++++.|+.+. ...+.
T Consensus 324 ---------------------~~~~~~~~~~~~~~~~~~fsp~~~~---------ll~~~~d~~~~~w~l~~~~~~~~~~ 373 (456)
T KOG0266|consen 324 ---------------------CLKLLSGAENSAPVTSVQFSPNGKY---------LLSASLDRTLKLWDLRSGKSVGTYT 373 (456)
T ss_pred ---------------------eeecccCCCCCCceeEEEECCCCcE---------EEEecCCCeEEEEEccCCcceeeec
Confidence 1222333322 5889999999999 99999999998665442 33334
Q ss_pred ccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecC-CcceeE--EecCCCEEE
Q 043350 419 GAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHH-QCAVQC--FCTYGSRMY 493 (1133)
Q Consensus 419 ~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h-~~~V~~--fs~dg~~La 493 (1133)
+|...+ ..+.+...++.+ .+++|+.|+.|.+|+. .+..+..+.+| ...+.. +++...+++
T Consensus 374 ~~~~~~---------------~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~ 438 (456)
T KOG0266|consen 374 GHSNLV---------------RCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIA 438 (456)
T ss_pred ccCCcc---------------eeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeee
Confidence 443332 122333456778 9999999999999999 47888899999 666665 999999999
Q ss_pred EEe--cCCeEEEEeCC
Q 043350 494 VGY--VSGYLQILDLD 507 (1133)
Q Consensus 494 sgs--~DG~I~vwd~~ 507 (1133)
+++ .|+.|++|...
T Consensus 439 s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 439 SSSFEGDGLIRLWKYD 454 (456)
T ss_pred ecCcCCCceEEEecCC
Confidence 998 79999999864
No 50
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.8e-25 Score=221.67 Aligned_cols=143 Identities=35% Similarity=0.540 Sum_probs=126.4
Q ss_pred cEEEEeeeecceEEEEEEEecccccccCceeecccccccccccccceeEEEEEEEcCeEEEEEecccccChHHHHH-HHH
Q 043350 652 TFERMGSRQLAGLLISFWVRKNLRTHVGDVDAAAVPCGFGRAIGNKGGVGLRIRVYDRTICFVNCHLAAHLEAVNR-RNA 730 (1133)
Q Consensus 652 ~y~~v~~~~l~g~~l~v~~~~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~~r~~~~~~~~~fvn~Hlaa~~~~~~~-Rn~ 730 (1133)
.|+.+.+.+|+|+.+.+|+++++..++.++++.++++|+++++||||||++++.++++.+|||||||+||.++..+ ||+
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~g~~~~~~nkg~v~is~~~~~~~~~~v~~hl~~~~~~~~~~r~~ 81 (145)
T KOG0565|consen 2 LYVVVASGRLVGIDLSVLLRRDLLDHSFNVRVSEVGTGIMGYLGNKGGVAISFVLSQTSFCFVISHLTSGVHKVYERRNE 81 (145)
T ss_pred cEEEEeeeEEEEEEEEEEehhhhhhhhcccEEEEecceEEEEeCCCCeEEEEEEEcCceEEEEEecccccchhhHHHhhc
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999999888 999
Q ss_pred HHHHHHHhCccCCCCCcccccccccccccccccccCCcccCCCCCCCCCCCCccEEEEEccCCccccCCChHHHHHhhcc
Q 043350 731 DYDHIYRNMVFSRSTSTLNSASAGVSTAVNMMKTSNTTTTLNTEETKPDLAEADMVIFFGDFNYRLFGISYDEARDFVSQ 810 (1133)
Q Consensus 731 d~~~i~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~GDlNyRi~~~~~~~~~~~~~~ 810 (1133)
||.+|++++.|....... .+......||.|||+||||||+.+.++.+++.++.+
T Consensus 82 d~~~i~~~~~~~~~~~~~--------------------------~~~~~~~~~D~v~w~GDlN~Rl~~~~~~~~~~~~~~ 135 (145)
T KOG0565|consen 82 DYQEILNGLRFPSVSPAS--------------------------EPVISDGEHDTVIWLGDLNYRLSGPSYLEVRTLISV 135 (145)
T ss_pred cHHHHHhhccccccCccc--------------------------ccccccccccEEEEecceeeeecCcccccchhhhhh
Confidence 999999999997543320 000001128999999999999998558899999999
Q ss_pred CChhHhhccc
Q 043350 811 RCFDWLREKD 820 (1133)
Q Consensus 811 ~~~~~Ll~~D 820 (1133)
+.++.|+++|
T Consensus 136 ~~~~~l~~~d 145 (145)
T KOG0565|consen 136 KSRDGLLEKD 145 (145)
T ss_pred cchhhhhccC
Confidence 9999998876
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2e-23 Score=241.69 Aligned_cols=287 Identities=16% Similarity=0.214 Sum_probs=229.4
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeC
Q 043350 212 TSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPW 290 (1133)
Q Consensus 212 ~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl 290 (1133)
.+.|-.++|+|...+++++--.|.|.+||.+- ..++..+..|.++|++|+|+|.+. ++|||.|-.|++|+.
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM--------~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM--------GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhh--------hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec
Confidence 45688899999999999999999999999885 156778999999999999999999 999999999999999
Q ss_pred CCC--ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEE
Q 043350 291 ESI--EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKV 368 (1133)
Q Consensus 291 ~~~--~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~ 368 (1133)
.+. .-.+..|-+-.+ ... ...+...++|+ +.|.+|+||+..+++++..
T Consensus 81 k~rrclftL~GHlDYVR---------t~~-------------FHheyPWIlSA--------SDDQTIrIWNwqsr~~iav 130 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVR---------TVF-------------FHHEYPWILSA--------SDDQTIRIWNWQSRKCIAV 130 (1202)
T ss_pred ccceehhhhccccceeE---------Eee-------------ccCCCceEEEc--------cCCCeEEEEeccCCceEEE
Confidence 762 222222222111 000 12233334445 7899999999999999999
Q ss_pred EecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccce--------------------eeccCCceEEEE
Q 043350 369 FNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNA--------------------IMGAADAVRRVA 428 (1133)
Q Consensus 369 ~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~--------------------~~~~~~~V~~v~ 428 (1133)
+.+|...|.|..|+|..+. ++++|.|.+|+.|+-..++. +.+..+.|-..
T Consensus 131 ltGHnHYVMcAqFhptEDl---------IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~- 200 (1202)
T KOG0292|consen 131 LTGHNHYVMCAQFHPTEDL---------IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKH- 200 (1202)
T ss_pred EecCceEEEeeccCCccce---------EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeee-
Confidence 9999999999999999989 99999999999666332111 11111111111
Q ss_pred EecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCCCCe---eEEEecCCcceeE--EecCCCEEEEEecCCeEE
Q 043350 429 TRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGNGNR---VSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQ 502 (1133)
Q Consensus 429 ~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g~~---l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~ 502 (1133)
.+.+|...|+.++|+|.- .|++|+.|..|++|..+... +-+..+|...|.| |+|..+.|++.|.|++|+
T Consensus 201 -----VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksir 275 (1202)
T KOG0292|consen 201 -----VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIR 275 (1202)
T ss_pred -----eecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEE
Confidence 167999999999999998 99999999999999996543 4456779999999 999999999999999999
Q ss_pred EEeCCC-CcceeeeccccCeEEeeec-ccceeeecccCCeeeccccCCCCc
Q 043350 503 ILDLDG-NLTASWIAHSSPVLKLAVG-VDHIYSLAAHGGIRGWTFTSPSPL 551 (1133)
Q Consensus 503 vwd~~g-~~l~~~~~H~~~V~~l~fs-~~~L~S~s~Dg~I~lW~l~s~~~l 551 (1133)
|||++. +.+++|+-..+.-+.++.+ .--|+.++.|+.+.++.++...|.
T Consensus 276 VwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa 326 (1202)
T KOG0292|consen 276 VWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPA 326 (1202)
T ss_pred EEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCce
Confidence 999985 6788898888888999998 667888999999999999876554
No 52
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.91 E-value=4.9e-23 Score=220.09 Aligned_cols=298 Identities=15% Similarity=0.180 Sum_probs=224.5
Q ss_pred cCCCccccccceEEEEEeCCCCeEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC---
Q 043350 147 PHPLKETQAGRFLRNIACTDTQLWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC--- 222 (1133)
Q Consensus 147 ~H~~~~~~~g~~V~~v~s~dg~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp--- 222 (1133)
.|.. +|.+|.-..+.+|. +.||.+|+||..+.. .....+|.++|..++|.-
T Consensus 103 ~hdD-------WVSsv~~~~~~IltgsYDg~~riWd~~Gk~------------------~~~~~Ght~~ik~v~~v~~n~ 157 (423)
T KOG0313|consen 103 LHDD-------WVSSVKGASKWILTGSYDGTSRIWDLKGKS------------------IKTIVGHTGPIKSVAWVIKNS 157 (423)
T ss_pred cchh-------hhhhhcccCceEEEeecCCeeEEEecCCce------------------EEEEecCCcceeeeEEEecCC
Confidence 4777 88888844556666 999999999988742 224668888999888754
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCC-ceeeEeC
Q 043350 223 GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESI-EKSLSLK 300 (1133)
Q Consensus 223 d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~-~~~l~~~ 300 (1133)
....+++||.|.++++|..+.++. ..+......||...|-+|...++|. ++|||.|.+|+||+.... ...+.-.
T Consensus 158 ~~~~fvsas~Dqtl~Lw~~~~~~~----~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~ 233 (423)
T KOG0313|consen 158 SSCLFVSASMDQTLRLWKWNVGEN----KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESS 233 (423)
T ss_pred ccceEEEecCCceEEEEEecCchh----hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCcccccccc
Confidence 334699999999999999886332 2244455669999999999999999 999999999999994431 1111100
Q ss_pred CCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEE
Q 043350 301 PEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVD 380 (1133)
Q Consensus 301 ~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~ 380 (1133)
...+. ......- ...++.++-++.+|.++|.++.
T Consensus 234 s~~rr---------------------------k~~~~~~-------------------~~~~r~P~vtl~GHt~~Vs~V~ 267 (423)
T KOG0313|consen 234 SNRRR---------------------------KKQKREK-------------------EGGTRTPLVTLEGHTEPVSSVV 267 (423)
T ss_pred chhhh---------------------------hhhhhhh-------------------cccccCceEEecccccceeeEE
Confidence 00000 0000000 0146778889999999999999
Q ss_pred eCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecC
Q 043350 381 TQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTN 459 (1133)
Q Consensus 381 ~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~D 459 (1133)
|++ ... +.++|.|.+|+.|+...... +..+ .-...+.++..+|.. +|++|+.|
T Consensus 268 w~d-~~v---------~yS~SwDHTIk~WDletg~~-------~~~~---------~~~ksl~~i~~~~~~~Ll~~gssd 321 (423)
T KOG0313|consen 268 WSD-ATV---------IYSVSWDHTIKVWDLETGGL-------KSTL---------TTNKSLNCISYSPLSKLLASGSSD 321 (423)
T ss_pred EcC-CCc---------eEeecccceEEEEEeecccc-------eeee---------ecCcceeEeecccccceeeecCCC
Confidence 998 445 88999999998776442221 1111 123457788888888 99999999
Q ss_pred CeEEEEeC-C--C-CeeEEEecCCcceeE--EecCCC-EEEEEecCCeEEEEeCCC-C-cceeeeccccCeEEeeec-cc
Q 043350 460 GLLVQWDG-N--G-NRVSDILHHQCAVQC--FCTYGS-RMYVGYVSGYLQILDLDG-N-LTASWIAHSSPVLKLAVG-VD 529 (1133)
Q Consensus 460 G~I~vWd~-~--g-~~l~~~~~h~~~V~~--fs~dg~-~Lasgs~DG~I~vwd~~g-~-~l~~~~~H~~~V~~l~fs-~~ 529 (1133)
..|++||. . | ...+++.+|...|.+ ++|... .|++|+.|+++++||+.. + ++..+.+|.+.|.++.|. +.
T Consensus 322 r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~ 401 (423)
T KOG0313|consen 322 RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGG 401 (423)
T ss_pred CceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCc
Confidence 99999998 2 2 356788899999998 888765 688999999999999984 3 889999999999999999 88
Q ss_pred ceeeecccCCeeeccc
Q 043350 530 HIYSLAAHGGIRGWTF 545 (1133)
Q Consensus 530 ~L~S~s~Dg~I~lW~l 545 (1133)
.|+|||.|.+|+++.-
T Consensus 402 ~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 402 LIVSGGADNKLRIFKG 417 (423)
T ss_pred eEEeccCcceEEEecc
Confidence 9999999999999863
No 53
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.1e-23 Score=224.28 Aligned_cols=279 Identities=15% Similarity=0.154 Sum_probs=212.8
Q ss_pred CCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEe
Q 043350 104 DQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFW 180 (1133)
Q Consensus 104 ~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvW 180 (1133)
..+.+..|+++|++||||+.|.+.-+|.......-+. ..++.+|.. +|.-|. |||..+++ +.|..+++|
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl-~~tlvgh~~-------~V~yi~wSPDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKL-KKTLVGHSQ-------PVSYIMWSPDDRYLLACGFDEVLSLW 296 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceee-eeeeecccC-------ceEEEEECCCCCeEEecCchHheeec
Confidence 3345589999999999999999999998763222223 678899998 999999 99877776 888899999
Q ss_pred eCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCccccccccc
Q 043350 181 NLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQA 260 (1133)
Q Consensus 181 dl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~g 260 (1133)
|..+..... . ...++.-.+.|++|.|||..+++|+.|+++..||+++ .....|++
T Consensus 297 Dv~tgd~~~---------------~-y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg---------n~~~~W~g 351 (519)
T KOG0293|consen 297 DVDTGDLRH---------------L-YPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG---------NILGNWEG 351 (519)
T ss_pred cCCcchhhh---------------h-cccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc---------chhhcccc
Confidence 998743221 0 1112344689999999999999999999999999998 66667777
Q ss_pred CC-CCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCcee-eEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEE
Q 043350 261 HR-GPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKS-LSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKC 337 (1133)
Q Consensus 261 H~-~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~-l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~ 337 (1133)
-+ ..|.+++.++||+ +++...|..|++++.++.+.. +.-. ..+-..+
T Consensus 352 vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise------------------------------~~~its~ 401 (519)
T KOG0293|consen 352 VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISE------------------------------EQPITSF 401 (519)
T ss_pred cccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccc------------------------------cCceeEE
Confidence 64 5699999999999 888899999999998763211 1111 1222344
Q ss_pred EEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccccccccee
Q 043350 338 MLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAI 417 (1133)
Q Consensus 338 l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~ 417 (1133)
..|.|+...+.+..+..+++||+.....++.+.+|.+. .+ ++-.
T Consensus 402 ~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~----------~f---------iIrS----------------- 445 (519)
T KOG0293|consen 402 SISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQG----------HF---------IIRS----------------- 445 (519)
T ss_pred EEcCCCcEEEEEcccCeeEEeecchhhHHHHhhccccc----------ce---------EEEe-----------------
Confidence 55666666666789999999999988888888877643 12 1110
Q ss_pred eccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecC-CCEEE
Q 043350 418 MGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTY-GSRMY 493 (1133)
Q Consensus 418 ~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~d-g~~La 493 (1133)
+|. ++ .+..+++|++|+.|+||+. +|+++.++.+|...|+| ++|. ..++|
T Consensus 446 ----------CFg------g~----------~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~A 499 (519)
T KOG0293|consen 446 ----------CFG------GG----------NDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFA 499 (519)
T ss_pred ----------ccC------CC----------CcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhh
Confidence 111 11 1126899999999999999 88999999999999999 6664 46899
Q ss_pred EEecCCeEEEEeCC
Q 043350 494 VGYVSGYLQILDLD 507 (1133)
Q Consensus 494 sgs~DG~I~vwd~~ 507 (1133)
+|+.||+|+||...
T Consensus 500 SasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 500 SASDDGTIRIWGPS 513 (519)
T ss_pred ccCCCCeEEEecCC
Confidence 99999999999865
No 54
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.91 E-value=4e-22 Score=220.40 Aligned_cols=280 Identities=21% Similarity=0.310 Sum_probs=214.5
Q ss_pred eeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEE
Q 043350 142 CLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCL 218 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~l 218 (1133)
+..+++|.. .|.++. ++++++++ +.|+.|++|++.+... ......|..++.++
T Consensus 2 ~~~~~~h~~-------~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~-----------------~~~~~~~~~~i~~~ 57 (289)
T cd00200 2 RRTLKGHTG-------GVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-----------------LRTLKGHTGPVRDV 57 (289)
T ss_pred chHhcccCC-------CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc-----------------EEEEecCCcceeEE
Confidence 345778888 999999 89988888 6699999999876321 22345677788999
Q ss_pred EEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceee
Q 043350 219 MVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSL 297 (1133)
Q Consensus 219 a~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l 297 (1133)
.|+++++.|++++.||.|++|++... +....+..|...|.++.|++++. +++++.|+.|++|++.+.....
T Consensus 58 ~~~~~~~~l~~~~~~~~i~i~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 129 (289)
T cd00200 58 AASADGTYLASGSSDKTIRLWDLETG--------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT 129 (289)
T ss_pred EECCCCCEEEEEcCCCeEEEEEcCcc--------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE
Confidence 99999999999999999999999861 34556778999999999999988 7777779999999997532222
Q ss_pred EeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCccee
Q 043350 298 SLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIEN 377 (1133)
Q Consensus 298 ~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~ 377 (1133)
.+...... +..+...+. ..+++++ ..++.|.+||+++++.+..+..+...+.
T Consensus 130 ~~~~~~~~------------------i~~~~~~~~--~~~l~~~--------~~~~~i~i~d~~~~~~~~~~~~~~~~i~ 181 (289)
T cd00200 130 TLRGHTDW------------------VNSVAFSPD--GTFVASS--------SQDGTIKLWDLRTGKCVATLTGHTGEVN 181 (289)
T ss_pred EeccCCCc------------------EEEEEEcCc--CCEEEEE--------cCCCcEEEEEccccccceeEecCccccc
Confidence 22111111 111111122 2333333 4589999999999999999999988999
Q ss_pred EEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEE
Q 043350 378 RVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSG 456 (1133)
Q Consensus 378 ~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sg 456 (1133)
++.++|++.. +++++.++.++.|+.+..... ..+..+...+.++.+++++ .++++
T Consensus 182 ~~~~~~~~~~---------l~~~~~~~~i~i~d~~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 182 SVAFSPDGEK---------LLSSSSDGTIKLWDLSTGKCL---------------GTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred eEEECCCcCE---------EEEecCCCcEEEEECCCCcee---------------cchhhcCCceEEEEEcCCCcEEEEE
Confidence 9999999988 888888999875554321110 1133556688889999988 77777
Q ss_pred ecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEe
Q 043350 457 CTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILD 505 (1133)
Q Consensus 457 s~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd 505 (1133)
+.||.|++|+. .+..+..+..|...|.+ |++++.+|++++.||.|++|+
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77999999999 46888888889888988 999999999999999999996
No 55
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=1.4e-22 Score=230.94 Aligned_cols=287 Identities=15% Similarity=0.160 Sum_probs=221.4
Q ss_pred eeeeccCCCccccccceEEEEEeCCCC-eEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEE-E
Q 043350 142 CLELRPHPLKETQAGRFLRNIACTDTQ-LWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMC-L 218 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V~~v~s~dg~-lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~-l 218 (1133)
..++.+|.. .|+.++..++. ++. |.|+++++|+-.+..- .+|. ....|.+-|.+ +
T Consensus 7 s~~l~gH~~-------DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~--l~~~-------------~~~~~~g~i~~~i 64 (745)
T KOG0301|consen 7 SHELEGHKS-------DVRAVAVTDGVCIISGSRDGTVKVWAKKGKQY--LETH-------------AFEGPKGFIANSI 64 (745)
T ss_pred EEEeccCcc-------chheeEecCCeEEeecCCCCceeeeeccCccc--ccce-------------ecccCcceeeccc
Confidence 567889998 88888844444 555 8899999999755211 0111 12234344444 6
Q ss_pred EEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCCCCceee
Q 043350 219 MVDC-GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWESIEKSL 297 (1133)
Q Consensus 219 a~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~~~~~~l 297 (1133)
++.+ ++..|++|+.|.+|.+|...+ ..++.++.+|...|.|+....++.|+|||.|.++++|...
T Consensus 65 ~y~e~~~~~l~~g~~D~~i~v~~~~~--------~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~------ 130 (745)
T KOG0301|consen 65 CYAESDKGRLVVGGMDTTIIVFKLSQ--------AEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG------ 130 (745)
T ss_pred eeccccCcceEeecccceEEEEecCC--------CCchhhhhccccceeeeecCCcCceEecccccceEEecch------
Confidence 6665 566799999999999999986 2668899999999999998777779999999999999653
Q ss_pred EeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCccee
Q 043350 298 SLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIEN 377 (1133)
Q Consensus 298 ~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~ 377 (1133)
++...+++|...|+
T Consensus 131 ------------------------------------------------------------------~l~~~l~gH~asVW 144 (745)
T KOG0301|consen 131 ------------------------------------------------------------------ELVYSLQGHTASVW 144 (745)
T ss_pred ------------------------------------------------------------------hhhcccCCcchhee
Confidence 23334678888899
Q ss_pred EEEeCCCCCccccccceEEEEeeCCCCccccccc-cccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEE
Q 043350 378 RVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQ-RSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSG 456 (1133)
Q Consensus 378 ~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~-~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sg 456 (1133)
++..-|++ . +++||.|.+|+.|.+ +..+++.+|. +.|..+++-+++.++++
T Consensus 145 Av~~l~e~-~---------~vTgsaDKtIklWk~~~~l~tf~gHt------------------D~VRgL~vl~~~~flSc 196 (745)
T KOG0301|consen 145 AVASLPEN-T---------YVTGSADKTIKLWKGGTLLKTFSGHT------------------DCVRGLAVLDDSHFLSC 196 (745)
T ss_pred eeeecCCC-c---------EEeccCcceeeeccCCchhhhhccch------------------hheeeeEEecCCCeEee
Confidence 99988888 5 789999999997764 4455555554 44555555566678999
Q ss_pred ecCCeEEEEeCCCCeeEEEecCCcceeEE--ecCCCEEEEEecCCeEEEEeCCCCcceeeeccccCeEEeeec-ccceee
Q 043350 457 CTNGLLVQWDGNGNRVSDILHHQCAVQCF--CTYGSRMYVGYVSGYLQILDLDGNLTASWIAHSSPVLKLAVG-VDHIYS 533 (1133)
Q Consensus 457 s~DG~I~vWd~~g~~l~~~~~h~~~V~~f--s~dg~~Lasgs~DG~I~vwd~~g~~l~~~~~H~~~V~~l~fs-~~~L~S 533 (1133)
+.||.|++|++.|.++.++.+|+.-|+++ ..++..+++++.|+++++|+.. ++.+.+.-....|+++.+- +.-|++
T Consensus 197 sNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-e~~q~I~lPttsiWsa~~L~NgDIvv 275 (745)
T KOG0301|consen 197 SNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-ECVQVITLPTTSIWSAKVLLNGDIVV 275 (745)
T ss_pred cCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-ceEEEEecCccceEEEEEeeCCCEEE
Confidence 99999999999999999999999999994 5778899999999999999987 5555555555689999888 889999
Q ss_pred ecccCCeeeccccCCCCchhhhHHHH
Q 043350 534 LAAHGGIRGWTFTSPSPLDNIIRSEI 559 (1133)
Q Consensus 534 ~s~Dg~I~lW~l~s~~~ld~~i~~eL 559 (1133)
++.||.||+|........++.....+
T Consensus 276 g~SDG~VrVfT~~k~R~As~evl~af 301 (745)
T KOG0301|consen 276 GGSDGRVRVFTVDKDRKASDEVLKAF 301 (745)
T ss_pred eccCceEEEEEecccccCCHHHHHHH
Confidence 99999999999877665554443333
No 56
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.2e-22 Score=235.17 Aligned_cols=299 Identities=13% Similarity=0.162 Sum_probs=229.1
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCC
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDS 185 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~ 185 (1133)
.+|+|.--+|+++-..|+|.+||..- +.. +..+..|.+ +|+.|. .+.+.+++ |.|-.|+||++...
T Consensus 15 lsFHP~rPwILtslHsG~IQlWDYRM---~tl-i~rFdeHdG-------pVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLHSGVIQLWDYRM---GTL-IDRFDEHDG-------PVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred eecCCCCCEEEEeecCceeeeehhhh---hhH-HhhhhccCC-------ccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 78999999999999999999999652 555 788999999 999999 99999999 78899999999874
Q ss_pred CCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCe
Q 043350 186 YEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPV 265 (1133)
Q Consensus 186 ~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V 265 (1133)
.+ -+.+.+|..=|..+.|++.-.+|+|+|.|.||+||+... .+++..+.||...|
T Consensus 84 rc-----------------lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs--------r~~iavltGHnHYV 138 (1202)
T KOG0292|consen 84 RC-----------------LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS--------RKCIAVLTGHNHYV 138 (1202)
T ss_pred ee-----------------hhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC--------CceEEEEecCceEE
Confidence 33 234556777788999999999999999999999999986 26788999999999
Q ss_pred EEEEEeeCCc-EEEEeCCCcEEEEeCCCC-ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCC
Q 043350 266 LAMIFSSQGD-LWSGGEGGVIKIWPWESI-EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHA 343 (1133)
Q Consensus 266 ~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~-~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~ 343 (1133)
.|..|+|..+ ++|+|.|.+|||||+... .+. ..|.+.. .......
T Consensus 139 McAqFhptEDlIVSaSLDQTVRVWDisGLRkk~--~~pg~~e-----------------------~~~~~~~-------- 185 (1202)
T KOG0292|consen 139 MCAQFHPTEDLIVSASLDQTVRVWDISGLRKKN--KAPGSLE-----------------------DQMRGQQ-------- 185 (1202)
T ss_pred EeeccCCccceEEEecccceEEEEeecchhccC--CCCCCch-----------------------hhhhccc--------
Confidence 9999999888 999999999999999752 111 1111000 0000000
Q ss_pred ceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCc
Q 043350 344 RARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADA 423 (1133)
Q Consensus 344 ~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~ 423 (1133)
+...++-..+.-....+++|...|+-++|+|.-.+ |++|+.|..|+.|.-.. ..
T Consensus 186 ---------~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl---------iVSG~DDRqVKlWrmne--------tK 239 (1202)
T KOG0292|consen 186 ---------GNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL---------IVSGADDRQVKLWRMNE--------TK 239 (1202)
T ss_pred ---------cchhhcCCcCeeeeeeecccccccceEEecCCcce---------EEecCCcceeeEEEecc--------cc
Confidence 00001100111223578999999999999999989 99999999997554332 23
Q ss_pred eEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCC
Q 043350 424 VRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSG 499 (1133)
Q Consensus 424 V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG 499 (1133)
+|.+.. ..+|...|.++.|+|.. .|++.++|++|++||+ ..+.++++......-++ .+|..+++|+| .|+
T Consensus 240 aWEvDt-----crgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDs 313 (1202)
T KOG0292|consen 240 AWEVDT-----CRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDS 313 (1202)
T ss_pred ceeehh-----hhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCC
Confidence 344433 37889999999999988 9999999999999999 45889999776666666 77778866665 566
Q ss_pred eEEEEeCCC
Q 043350 500 YLQILDLDG 508 (1133)
Q Consensus 500 ~I~vwd~~g 508 (1133)
.+-||.++.
T Consensus 314 Gm~VFkleR 322 (1202)
T KOG0292|consen 314 GMIVFKLER 322 (1202)
T ss_pred ceEEEEEcc
Confidence 677888764
No 57
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.2e-22 Score=204.19 Aligned_cols=272 Identities=16% Similarity=0.204 Sum_probs=211.8
Q ss_pred eeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCC--CCCcCcCCCccccCCCCCCCceeeccCCCCeE
Q 043350 142 CLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLED--SYEPGAGIGGRVRRGDEDAAPFYESANTSPTM 216 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~--~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~ 216 (1133)
...+..|++ +|+++. .-+|.+.. +.|++||+|+... .++ .+++|...|.
T Consensus 10 ~~~l~~~qg-------aV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik-------------------tYsghG~EVl 63 (307)
T KOG0316|consen 10 LSILDCAQG-------AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK-------------------TYSGHGHEVL 63 (307)
T ss_pred ceeeccccc-------ceEEEEEccCCCEEEEcCCCceEEeecccccceee-------------------eecCCCceee
Confidence 456778888 999999 88998888 9999999999765 333 3556666888
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCce
Q 043350 217 CLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEK 295 (1133)
Q Consensus 217 ~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~ 295 (1133)
.++.+.|+..+++|+.|..|.+||+.++ +....|.+|.+.|+.++|+.+.. ++|||.|.++++||.+.
T Consensus 64 D~~~s~Dnskf~s~GgDk~v~vwDV~TG--------kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS--- 132 (307)
T KOG0316|consen 64 DAALSSDNSKFASCGGDKAVQVWDVNTG--------KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRS--- 132 (307)
T ss_pred eccccccccccccCCCCceEEEEEcccC--------eeeeecccccceeeEEEecCcceEEEeccccceeEEEEccc---
Confidence 8888889999999999999999999862 55778999999999999998888 99999999999999864
Q ss_pred eeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcc
Q 043350 296 SLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHI 375 (1133)
Q Consensus 296 ~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~ 375 (1133)
+.-++++.+....+.
T Consensus 133 -----------------------------------------------------------------~s~ePiQildea~D~ 147 (307)
T KOG0316|consen 133 -----------------------------------------------------------------RSFEPIQILDEAKDG 147 (307)
T ss_pred -----------------------------------------------------------------CCCCccchhhhhcCc
Confidence 233444555555555
Q ss_pred eeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEE
Q 043350 376 ENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIW 454 (1133)
Q Consensus 376 v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~ 454 (1133)
|.++.++.. . |++||.||+++.++.+..+.. ..-...+|+++.|++++ .++
T Consensus 148 V~Si~v~~h--e---------IvaGS~DGtvRtydiR~G~l~-----------------sDy~g~pit~vs~s~d~nc~L 199 (307)
T KOG0316|consen 148 VSSIDVAEH--E---------IVAGSVDGTVRTYDIRKGTLS-----------------SDYFGHPITSVSFSKDGNCSL 199 (307)
T ss_pred eeEEEeccc--E---------EEeeccCCcEEEEEeecceee-----------------hhhcCCcceeEEecCCCCEEE
Confidence 666665543 2 778888888875554422110 01223568888888999 888
Q ss_pred EEecCCeEEEEeC-CCCeeEEEecCCcc---eeE-EecCCCEEEEEecCCeEEEEeCC-CCcceeeeccccC-eEEeeec
Q 043350 455 SGCTNGLLVQWDG-NGNRVSDILHHQCA---VQC-FCTYGSRMYVGYVSGYLQILDLD-GNLTASWIAHSSP-VLKLAVG 527 (1133)
Q Consensus 455 sgs~DG~I~vWd~-~g~~l~~~~~h~~~---V~~-fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~H~~~-V~~l~fs 527 (1133)
.++.|+++++.|. .|++++.+++|... +-| +......+++|+.||.|++||+. +.++..+..|+.. |++++++
T Consensus 200 a~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~h 279 (307)
T KOG0316|consen 200 ASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCH 279 (307)
T ss_pred EeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecc
Confidence 9999999999999 78999999998753 445 77778899999999999999986 5677788888887 8899999
Q ss_pred --ccceeeecccCCeeecc
Q 043350 528 --VDHIYSLAAHGGIRGWT 544 (1133)
Q Consensus 528 --~~~L~S~s~Dg~I~lW~ 544 (1133)
-..++++. ++.+.+|-
T Consensus 280 p~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 280 PTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred cCccceeEec-CCceecee
Confidence 44455544 44566664
No 58
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=4.1e-23 Score=215.11 Aligned_cols=283 Identities=15% Similarity=0.219 Sum_probs=220.9
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEE
Q 043350 210 ANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIW 288 (1133)
Q Consensus 210 ~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iW 288 (1133)
+..+.+-|..|+|||++|++||.||.|-+|+...+.-...-.++....+.-|.++|.|+.|+.|.. |+||+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 345678999999999999999999999999987643200111122224555789999999999999 9999999999999
Q ss_pred eCCCC--ceeeE-eCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCce
Q 043350 289 PWESI--EKSLS-LKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKEL 365 (1133)
Q Consensus 289 dl~~~--~~~l~-~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~ 365 (1133)
.++++ .+.+. .|..+.. .+.+ +.+...+.++ +.|.++++.-+.+|++
T Consensus 291 ri~tG~ClRrFdrAHtkGvt---------~l~F-------------SrD~SqiLS~--------sfD~tvRiHGlKSGK~ 340 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVT---------CLSF-------------SRDNSQILSA--------SFDQTVRIHGLKSGKC 340 (508)
T ss_pred EEecchHHHHhhhhhccCee---------EEEE-------------ccCcchhhcc--------cccceEEEeccccchh
Confidence 99874 22222 2333333 1111 1222233344 7899999999999999
Q ss_pred eEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEE
Q 043350 366 LKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAM 445 (1133)
Q Consensus 366 l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl 445 (1133)
++.|.+|+..|+...|+++|.. ++++|.||+++.|..+....+. .|.| .+....|+++
T Consensus 341 LKEfrGHsSyvn~a~ft~dG~~---------iisaSsDgtvkvW~~KtteC~~---------Tfk~----~~~d~~vnsv 398 (508)
T KOG0275|consen 341 LKEFRGHSSYVNEATFTDDGHH---------IISASSDGTVKVWHGKTTECLS---------TFKP----LGTDYPVNSV 398 (508)
T ss_pred HHHhcCccccccceEEcCCCCe---------EEEecCCccEEEecCcchhhhh---------hccC----CCCcccceeE
Confidence 9999999999999999999999 9999999999977765322211 1221 1234456777
Q ss_pred EECCCC--eEEEEecCCeEEEEeCCCCeeEEEec----CCcceeE-EecCCCEEEEEecCCeEEEEeCC-CCcceeeecc
Q 043350 446 VLTADG--MIWSGCTNGLLVQWDGNGNRVSDILH----HQCAVQC-FCTYGSRMYVGYVSGYLQILDLD-GNLTASWIAH 517 (1133)
Q Consensus 446 ~~spdg--~L~sgs~DG~I~vWd~~g~~l~~~~~----h~~~V~~-fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~H 517 (1133)
..-|.+ .++.+....+|.+-+++|+.++++.. ....|.| ++|.|+++++.+.|+.++.|.+. |++..++.-|
T Consensus 399 ~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh 478 (508)
T KOG0275|consen 399 ILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH 478 (508)
T ss_pred EEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecc
Confidence 777766 88889999999999999999999865 3456777 99999999999999999999975 7888899999
Q ss_pred ccCeEEeeec--ccceeeecccCCeeecc
Q 043350 518 SSPVLKLAVG--VDHIYSLAAHGGIRGWT 544 (1133)
Q Consensus 518 ~~~V~~l~fs--~~~L~S~s~Dg~I~lW~ 544 (1133)
...|..++.+ .+.|+|-+.||.+++|.
T Consensus 479 EkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 479 EKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccccccccCcccchhhhhcccchhhhcC
Confidence 9999999998 78899999999999996
No 59
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=7.5e-23 Score=229.67 Aligned_cols=274 Identities=15% Similarity=0.164 Sum_probs=215.3
Q ss_pred eEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCC
Q 043350 158 FLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDG 234 (1133)
Q Consensus 158 ~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg 234 (1133)
.|.+|. .|-..++. -..|.|.|||.++..... ...+..-||.+..|-+--+++++|+.|.
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk-----------------sfeV~~~PvRa~kfiaRknWiv~GsDD~ 77 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK-----------------SFEVSEVPVRAAKFIARKNWIVTGSDDM 77 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEecccceeee-----------------eeeecccchhhheeeeccceEEEecCCc
Confidence 677777 66555444 578999999998842211 1234456889999988899999999999
Q ss_pred eEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecc
Q 043350 235 KIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVER 313 (1133)
Q Consensus 235 ~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~ 313 (1133)
.|||++..+ ...+..+.+|.+.|++++.+|... ++|+|.|.+||+||++.
T Consensus 78 ~IrVfnynt--------~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~--------------------- 128 (794)
T KOG0276|consen 78 QIRVFNYNT--------GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN--------------------- 128 (794)
T ss_pred eEEEEeccc--------ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC---------------------
Confidence 999999987 356889999999999999999988 99999999999999863
Q ss_pred eEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCC-CCcccccc
Q 043350 314 SFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSV-QDQPVEDE 392 (1133)
Q Consensus 314 s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~-g~~~~e~e 392 (1133)
...+.++|++|..-|.+++|.|. ...
T Consensus 129 ------------------------------------------------~wa~~qtfeGH~HyVMqv~fnPkD~nt----- 155 (794)
T KOG0276|consen 129 ------------------------------------------------EWACEQTFEGHEHYVMQVAFNPKDPNT----- 155 (794)
T ss_pred ------------------------------------------------ceeeeeEEcCcceEEEEEEecCCCccc-----
Confidence 12345789999999999999995 456
Q ss_pred ceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC---eEEEEecCCeEEEEeCCC
Q 043350 393 MKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG---MIWSGCTNGLLVQWDGNG 469 (1133)
Q Consensus 393 ~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg---~L~sgs~DG~I~vWd~~g 469 (1133)
+|++|.|++|+.|..... .|+-++.+|...|+++.+-+.| +|++|+.|.+|++||.+.
T Consensus 156 ----FaS~sLDrTVKVWslgs~---------------~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt 216 (794)
T KOG0276|consen 156 ----FASASLDRTVKVWSLGSP---------------HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT 216 (794)
T ss_pred ----eeeeeccccEEEEEcCCC---------------CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch
Confidence 999999999975542211 1222356777888888877766 999999999999999955
Q ss_pred -CeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCC-CcceeeeccccCeEEeeec--ccceeeecccCCeeec
Q 043350 470 -NRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG-NLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGW 543 (1133)
Q Consensus 470 -~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g-~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW 543 (1133)
.|++++.+|...|.+ |.|.=..+++|+.||+|+||.-.. ++..++.---+.|++++.. ++.++.|.+.|. .+-
T Consensus 217 k~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~-i~v 295 (794)
T KOG0276|consen 217 KSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGS-VTV 295 (794)
T ss_pred HHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCc-EEE
Confidence 899999999999988 888888999999999999999764 5666677777889999977 444555544444 444
Q ss_pred cccCCCC
Q 043350 544 TFTSPSP 550 (1133)
Q Consensus 544 ~l~s~~~ 550 (1133)
++....|
T Consensus 296 ~lgreeP 302 (794)
T KOG0276|consen 296 KLGREEP 302 (794)
T ss_pred EccCCCC
Confidence 5544333
No 60
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.3e-22 Score=204.00 Aligned_cols=240 Identities=18% Similarity=0.237 Sum_probs=190.8
Q ss_pred ccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCC
Q 043350 253 KEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSIS 331 (1133)
Q Consensus 253 ~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~ 331 (1133)
+....+.+|.++|..+.|+-+|+ .+||+.|.+||+|+.-.+...-....++.. +.|.. .
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~E---------VlD~~-----------~ 67 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHE---------VLDAA-----------L 67 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCce---------eeecc-----------c
Confidence 56678899999999999999999 999999999999998764333333333333 33433 3
Q ss_pred CCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccc
Q 043350 332 STEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQ 411 (1133)
Q Consensus 332 ~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~ 411 (1133)
..+..-++++ +.|..+.+||+.+|+.++.|.+|...|+.+.|+.+... +++|+.|.+++.|+-
T Consensus 68 s~Dnskf~s~--------GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSV---------v~SgsfD~s~r~wDC 130 (307)
T KOG0316|consen 68 SSDNSKFASC--------GGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSV---------VASGSFDSSVRLWDC 130 (307)
T ss_pred cccccccccC--------CCCceEEEEEcccCeeeeecccccceeeEEEecCcceE---------EEeccccceeEEEEc
Confidence 3455556677 89999999999999999999999999999999999998 999999999997775
Q ss_pred c-----ccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeC-CCCeeEEEecCCcceeEE
Q 043350 412 R-----SRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQCF 485 (1133)
Q Consensus 412 ~-----~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~f 485 (1133)
+ +++.+....+.|.++... +..|++|+.||+++.||+ .|+......+|.-...+|
T Consensus 131 RS~s~ePiQildea~D~V~Si~v~-------------------~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~ 191 (307)
T KOG0316|consen 131 RSRSFEPIQILDEAKDGVSSIDVA-------------------EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSF 191 (307)
T ss_pred ccCCCCccchhhhhcCceeEEEec-------------------ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEe
Confidence 4 333344444444444433 126899999999999999 777777777665444449
Q ss_pred ecCCCEEEEEecCCeEEEEeCC-CCcceeeeccccCeEEee--ec--ccceeeecccCCeeeccccCC
Q 043350 486 CTYGSRMYVGYVSGYLQILDLD-GNLTASWIAHSSPVLKLA--VG--VDHIYSLAAHGGIRGWTFTSP 548 (1133)
Q Consensus 486 s~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~H~~~V~~l~--fs--~~~L~S~s~Dg~I~lW~l~s~ 548 (1133)
++||+.+.+++.|+++++.|.+ |++++.++||...-..+. +. ...++++|.||.|.+||+...
T Consensus 192 s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 192 SKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred cCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc
Confidence 9999999999999999999987 799999999987655443 33 778999999999999998653
No 61
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.90 E-value=3.3e-23 Score=227.70 Aligned_cols=287 Identities=17% Similarity=0.212 Sum_probs=216.5
Q ss_pred CCCcccccCCCCCCCCCcccccCC-CCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCC
Q 043350 90 VNEDYVCPGPDAADDQQQHKPFQP-MVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDT 167 (1133)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~p-~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg 167 (1133)
-.......||...+++ ..|-| .+.+|++||-|+.|+||+.-. ....+.++.+|.. +|+++. +.+|
T Consensus 204 kk~~~~~~gH~kgvsa---i~~fp~~~hLlLS~gmD~~vklW~vy~---~~~~lrtf~gH~k-------~Vrd~~~s~~g 270 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSA---IQWFPKKGHLLLSGGMDGLVKLWNVYD---DRRCLRTFKGHRK-------PVRDASFNNCG 270 (503)
T ss_pred HhheeeccCCccccch---hhhccceeeEEEecCCCceEEEEEEec---Ccceehhhhcchh-------hhhhhhccccC
Confidence 3456667799988888 66677 899999999999999999762 2344889999999 999999 8888
Q ss_pred CeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEeCCCC
Q 043350 168 QLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGN-RLVWTGHKDGKIRSWKMDQT 244 (1133)
Q Consensus 168 ~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~-~~LaSgs~Dg~V~vWd~~~~ 244 (1133)
..+. |.|+.|++||+++.......|. ...++|+.|+|++ +.+++|+.|+.|+.||++.+
T Consensus 271 ~~fLS~sfD~~lKlwDtETG~~~~~f~~------------------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~ 332 (503)
T KOG0282|consen 271 TSFLSASFDRFLKLWDTETGQVLSRFHL------------------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG 332 (503)
T ss_pred CeeeeeecceeeeeeccccceEEEEEec------------------CCCceeeecCCCCCcEEEEecCCCcEEEEeccch
Confidence 6666 9999999999998644322222 2368999999987 89999999999999999972
Q ss_pred CCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCcee
Q 043350 245 LDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVT 323 (1133)
Q Consensus 245 ~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~ 323 (1133)
+.++.+..|-+.|..+.|-++|. ++|.++|++++||+.+..+.. .
T Consensus 333 --------kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~i----------------------k---- 378 (503)
T KOG0282|consen 333 --------KVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPI----------------------K---- 378 (503)
T ss_pred --------HHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccc----------------------h----
Confidence 45667888999999999999999 999999999999998642111 0
Q ss_pred eeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCC
Q 043350 324 VNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKK 403 (1133)
Q Consensus 324 v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~D 403 (1133)
.....+.....++..+|++.+ +++-+.|
T Consensus 379 -------------------------------------------~i~~~~~hsmP~~~~~P~~~~---------~~aQs~d 406 (503)
T KOG0282|consen 379 -------------------------------------------NIADPEMHTMPCLTLHPNGKW---------FAAQSMD 406 (503)
T ss_pred -------------------------------------------hhcchhhccCcceecCCCCCe---------ehhhccC
Confidence 000111122446788888888 7777777
Q ss_pred CccccccccccceeeccCCceEEEEEecCCcccCCC--CCEEEEEECCCC-eEEEEecCCeEEEEeCC-CCeeEEEecCC
Q 043350 404 EKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDT--KRTEAMVLTADG-MIWSGCTNGLLVQWDGN-GNRVSDILHHQ 479 (1133)
Q Consensus 404 g~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~--~~V~sl~~spdg-~L~sgs~DG~I~vWd~~-g~~l~~~~~h~ 479 (1133)
+.|..+.... ....+....|.+|. +--..+.||||| +|++|..||.+.+||.+ .+.+..++.|.
T Consensus 407 N~i~ifs~~~------------~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~ 474 (503)
T KOG0282|consen 407 NYIAIFSTVP------------PFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD 474 (503)
T ss_pred ceEEEEeccc------------ccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC
Confidence 7775221110 00111111133332 224557799999 99999999999999995 48888999998
Q ss_pred cceeE--EecCC-CEEEEEecCCeEEEEe
Q 043350 480 CAVQC--FCTYG-SRMYVGYVSGYLQILD 505 (1133)
Q Consensus 480 ~~V~~--fs~dg-~~Lasgs~DG~I~vwd 505 (1133)
..+.. |.|.. ..||+++.||.|++|+
T Consensus 475 ~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 475 QPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cceEEEEecCCCcceeEecccCceeEecC
Confidence 88887 88864 5899999999999996
No 62
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.90 E-value=5.5e-23 Score=221.73 Aligned_cols=282 Identities=17% Similarity=0.263 Sum_probs=216.2
Q ss_pred eeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEE
Q 043350 142 CLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCL 218 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~l 218 (1133)
...+..|.+ .+..+. -++...|+ +.|..|++|+.......+ | ..+.+..++|+.+
T Consensus 168 ~~~ld~h~g-------ev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~--~-------------~tLaGs~g~it~~ 225 (459)
T KOG0288|consen 168 LFVLDAHEG-------EVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSEL--I-------------STLAGSLGNITSI 225 (459)
T ss_pred hhhhhcccc-------ccceeEEccCcchhhhcchhhhhhhhhcccchhhh--h-------------hhhhccCCCccee
Confidence 556778888 788888 66766777 899999999987743222 1 1455677899999
Q ss_pred EEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceee
Q 043350 219 MVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSL 297 (1133)
Q Consensus 219 a~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l 297 (1133)
.|+++++.+++++.|+.+++|+++. .+...++.||++.|+++.|..... +++|+.|.+||+||+....-.-
T Consensus 226 d~d~~~~~~iAas~d~~~r~Wnvd~--------~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 226 DFDSDNKHVIAASNDKNLRLWNVDS--------LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred eecCCCceEEeecCCCceeeeeccc--------hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheec
Confidence 9999999999999999999999986 366789999999999999988777 9999999999999997621111
Q ss_pred EeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCccee
Q 043350 298 SLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIEN 377 (1133)
Q Consensus 298 ~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~ 377 (1133)
...+... +.|+. -....+.|+ -.|+.|++||.++..+......++ .|+
T Consensus 298 t~l~~S~----------cnDI~-------------~~~~~~~Sg--------H~DkkvRfwD~Rs~~~~~sv~~gg-~vt 345 (459)
T KOG0288|consen 298 TVLPGSQ----------CNDIV-------------CSISDVISG--------HFDKKVRFWDIRSADKTRSVPLGG-RVT 345 (459)
T ss_pred ccccccc----------ccceE-------------ecceeeeec--------ccccceEEEeccCCceeeEeecCc-cee
Confidence 1111111 01110 012344555 678999999999999999998877 899
Q ss_pred EEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEE
Q 043350 378 RVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSG 456 (1133)
Q Consensus 378 ~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sg 456 (1133)
++..++++.. +.+.+.|.++..++.+.... +..++..|...++. .+.+.|||++ ++++|
T Consensus 346 Sl~ls~~g~~---------lLsssRDdtl~viDlRt~eI---------~~~~sA~g~k~asD--wtrvvfSpd~~YvaAG 405 (459)
T KOG0288|consen 346 SLDLSMDGLE---------LLSSSRDDTLKVIDLRTKEI---------RQTFSAEGFKCASD--WTRVVFSPDGSYVAAG 405 (459)
T ss_pred eEeeccCCeE---------EeeecCCCceeeeecccccE---------EEEeeccccccccc--cceeEECCCCceeeec
Confidence 9999999988 89999999997555543322 12233333333433 7888899999 99999
Q ss_pred ecCCeEEEEeC-CCCeeEEEecCCc--ceeE--EecCCCEEEEEecCCeEEEEe
Q 043350 457 CTNGLLVQWDG-NGNRVSDILHHQC--AVQC--FCTYGSRMYVGYVSGYLQILD 505 (1133)
Q Consensus 457 s~DG~I~vWd~-~g~~l~~~~~h~~--~V~~--fs~dg~~Lasgs~DG~I~vwd 505 (1133)
+.||.|+||+. .|++...+..... .|+| |+|.|.+|++++.++.+.+|.
T Consensus 406 S~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 406 SADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred cCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999999999 5677777766433 5888 999999999999999999993
No 63
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.90 E-value=9.4e-23 Score=206.52 Aligned_cols=283 Identities=11% Similarity=0.165 Sum_probs=210.0
Q ss_pred CcccccCCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeE
Q 043350 92 EDYVCPGPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLW 170 (1133)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~ll 170 (1133)
..+++.||+.|+....++...|+|-||++++.||.--+-+-++ |.- +-++.+|.+ .|++.. ..+-...
T Consensus 6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~t---gdw-igtfeghkg-------avw~~~l~~na~~a 74 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDT---GDW-IGTFEGHKG-------AVWSATLNKNATRA 74 (334)
T ss_pred CceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCC---CCc-EEeeeccCc-------ceeeeecCchhhhh
Confidence 4567889999998888888899999999999999877766554 777 899999999 999888 5555555
Q ss_pred E--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCC
Q 043350 171 A--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDA 248 (1133)
Q Consensus 171 a--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~ 248 (1133)
| +.|-+.+|||.-+.-.. ..-.|..-|.+++|+.|.+.|+||+.++.+||+|++..+
T Consensus 75 asaaadftakvw~a~tgdel------------------hsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~--- 133 (334)
T KOG0278|consen 75 ASAAADFTAKVWDAVTGDEL------------------HSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK--- 133 (334)
T ss_pred hhhcccchhhhhhhhhhhhh------------------hhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCC---
Confidence 5 88999999996552111 112466789999999999999999999999999998622
Q ss_pred CCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeecc
Q 043350 249 NNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGA 327 (1133)
Q Consensus 249 ~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~ 327 (1133)
.+...+.+|.+.|..+.|....+ |+|.++|++||+||.+++
T Consensus 134 ----App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTg---------------------------------- 175 (334)
T KOG0278|consen 134 ----APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTG---------------------------------- 175 (334)
T ss_pred ----CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccC----------------------------------
Confidence 34567899999999999998877 999999999999988652
Q ss_pred ccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccc
Q 043350 328 CSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPH 407 (1133)
Q Consensus 328 ~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~ 407 (1133)
..++++.. ...|+++.+++++++ |.++. .+.|.
T Consensus 176 ------------------------------------t~v~sL~~-~s~VtSlEvs~dG~i---------lTia~-gssV~ 208 (334)
T KOG0278|consen 176 ------------------------------------TEVQSLEF-NSPVTSLEVSQDGRI---------LTIAY-GSSVK 208 (334)
T ss_pred ------------------------------------cEEEEEec-CCCCcceeeccCCCE---------EEEec-CceeE
Confidence 22232221 223455555555554 33322 22232
Q ss_pred cccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEE-ecCCcceeE
Q 043350 408 GFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDI-LHHQCAVQC 484 (1133)
Q Consensus 408 ~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~-~~h~~~V~~ 484 (1133)
-|+......+... .-...|.+...+|+. .+++|++|+.++.||. .|..+..+ ++|.++|.|
T Consensus 209 Fwdaksf~~lKs~----------------k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhc 272 (334)
T KOG0278|consen 209 FWDAKSFGLLKSY----------------KMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHC 272 (334)
T ss_pred Eeccccccceeec----------------cCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEE
Confidence 3332222211100 111234455566777 8999999999999999 67777775 889999999
Q ss_pred --EecCCCEEEEEecCCeEEEEeCC
Q 043350 485 --FCTYGSRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 485 --fs~dg~~Lasgs~DG~I~vwd~~ 507 (1133)
|+|||..-|+||.||+|++|.+.
T Consensus 273 VrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 273 VRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred EEECCCCceeeccCCCceEEEEEec
Confidence 99999999999999999999976
No 64
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.89 E-value=1.7e-21 Score=249.41 Aligned_cols=277 Identities=16% Similarity=0.162 Sum_probs=199.1
Q ss_pred ccccCCCCCEEEEecCCCeEEeccCCCCC-CCC---CCeeeeccCCCccccccceEEEEE-eC-CCCeEE--ecCCcEEE
Q 043350 108 HKPFQPMVEFIGSGGGTGIFKVPSRAAVH-PGR---PPCLELRPHPLKETQAGRFLRNIA-CT-DTQLWA--GQECGVRF 179 (1133)
Q Consensus 108 ~~~~~p~g~~lasgs~dg~irlW~~~~~~-~g~---~~~~~l~~H~~~~~~~g~~V~~v~-s~-dg~lla--s~Dg~Vrv 179 (1133)
.+.|+|+|++||+||.|+.|+||+..... .+. .+...+.+| . .+.+++ ++ ++.+++ +.|++|++
T Consensus 488 ~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~-~-------~v~~l~~~~~~~~~las~~~Dg~v~l 559 (793)
T PLN00181 488 AIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASR-S-------KLSGICWNSYIKSQVASSNFEGVVQV 559 (793)
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEeccc-C-------ceeeEEeccCCCCEEEEEeCCCeEEE
Confidence 48899999999999999999999975210 011 113333332 2 577777 44 566777 78999999
Q ss_pred eeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCCccccccc
Q 043350 180 WNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSW 258 (1133)
Q Consensus 180 Wdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l 258 (1133)
||+.+... ......|..+|++++|+| ++.+|+||+.||+|++||+..+ ..+..+
T Consensus 560 Wd~~~~~~-----------------~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~--------~~~~~~ 614 (793)
T PLN00181 560 WDVARSQL-----------------VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG--------VSIGTI 614 (793)
T ss_pred EECCCCeE-----------------EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC--------cEEEEE
Confidence 99876321 113456888999999997 7899999999999999999862 233445
Q ss_pred ccCCCCeEEEEEee-CCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeE
Q 043350 259 QAHRGPVLAMIFSS-QGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIK 336 (1133)
Q Consensus 259 ~gH~~~V~sl~fsp-~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~ 336 (1133)
..| ..|.++.|++ +|. |++|+.||+|++||++..
T Consensus 615 ~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~------------------------------------------- 650 (793)
T PLN00181 615 KTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNP------------------------------------------- 650 (793)
T ss_pred ecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-------------------------------------------
Confidence 444 6899999965 577 999999999999998531
Q ss_pred EEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccce
Q 043350 337 CMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNA 416 (1133)
Q Consensus 337 ~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~ 416 (1133)
...+..+.+|...|..+.|. ++.. +++++.|++|+.|+.+....
T Consensus 651 --------------------------~~~~~~~~~h~~~V~~v~f~-~~~~---------lvs~s~D~~ikiWd~~~~~~ 694 (793)
T PLN00181 651 --------------------------KLPLCTMIGHSKTVSYVRFV-DSST---------LVSSSTDNTLKLWDLSMSIS 694 (793)
T ss_pred --------------------------CccceEecCCCCCEEEEEEe-CCCE---------EEEEECCCEEEEEeCCCCcc
Confidence 01123344677778888886 5667 88999999998666432100
Q ss_pred eeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCC-CCeeEEE-------------ecCCcc
Q 043350 417 IMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGN-GNRVSDI-------------LHHQCA 481 (1133)
Q Consensus 417 ~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~-g~~l~~~-------------~~h~~~ 481 (1133)
+.. ..+-..+.+|...+..+.+++++ +|++|+.||.|++|+.. ...+..+ ..|...
T Consensus 695 --~~~-------~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 765 (793)
T PLN00181 695 --GIN-------ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQF 765 (793)
T ss_pred --ccC-------CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcE
Confidence 000 00111245788888999999999 99999999999999973 3332221 224455
Q ss_pred eeE--EecCCCEEEEEecCCeEEEEeC
Q 043350 482 VQC--FCTYGSRMYVGYVSGYLQILDL 506 (1133)
Q Consensus 482 V~~--fs~dg~~Lasgs~DG~I~vwd~ 506 (1133)
|.+ |++++.+|++|+.||.|+||++
T Consensus 766 V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 766 ISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 776 8999999999999999999986
No 65
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.9e-22 Score=228.01 Aligned_cols=354 Identities=14% Similarity=0.220 Sum_probs=243.8
Q ss_pred CCCCCEEEEecCCCeEEeccCCCC--CCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCC
Q 043350 112 QPMVEFIGSGGGTGIFKVPSRAAV--HPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSY 186 (1133)
Q Consensus 112 ~p~g~~lasgs~dg~irlW~~~~~--~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~ 186 (1133)
.|.+++|.|||.||+|++|+.... .|..+.+..++.|.. +|..++ +.+++.|+ |.|.+|++|+.....
T Consensus 34 a~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsD-------WVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 34 APNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSD-------WVNDIILCGNGKTLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred CCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHh-------HHhhHHhhcCCCceEEecCCceEEEeecccCc
Confidence 577889999999999999997532 222334678889999 999999 77775555 999999999987642
Q ss_pred CcCcCCCccccCCCCCCCceeeccCCCCeEEEEE-eCCCCEEEEEeCCCeEEEEeCCCCCC---CCCCCcccccccc-cC
Q 043350 187 EPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMV-DCGNRLVWTGHKDGKIRSWKMDQTLD---DANNPFKEGLSWQ-AH 261 (1133)
Q Consensus 187 ~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~-spd~~~LaSgs~Dg~V~vWd~~~~~~---~~~~~~~~~~~l~-gH 261 (1133)
+++ ..+..-|..=|.|+++ .++..++||||.|+.|.+||++.+.. ...+ ......+. ||
T Consensus 107 -~~c--------------~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n-~~t~~sl~sG~ 170 (735)
T KOG0308|consen 107 -TFC--------------MSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN-NVTVNSLGSGP 170 (735)
T ss_pred -chh--------------HhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc-ccccccCCCCC
Confidence 111 1134467778999999 88999999999999999999986421 0011 11222333 89
Q ss_pred CCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceee--EeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEE
Q 043350 262 RGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSL--SLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCM 338 (1133)
Q Consensus 262 ~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l--~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l 338 (1133)
..+|++++..+.|. |++|+..+.|++||.+++.+.+ ..|.+... .++
T Consensus 171 k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr------------------------------~ll 220 (735)
T KOG0308|consen 171 KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVR------------------------------VLL 220 (735)
T ss_pred ccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceE------------------------------EEE
Confidence 99999999999999 9999999999999999854443 33444433 223
Q ss_pred EecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceee
Q 043350 339 LSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIM 418 (1133)
Q Consensus 339 ~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~ 418 (1133)
...||+..+-.++|++|++||+...+++.++..|...|+++..+|+-.. +.+|+.|+.|..-+.+...
T Consensus 221 ~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~---------vYsG~rd~~i~~Tdl~n~~--- 288 (735)
T KOG0308|consen 221 VNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTH---------VYSGGRDGNIYRTDLRNPA--- 288 (735)
T ss_pred EcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcce---------EEecCCCCcEEecccCCch---
Confidence 3334444444489999999999999999999999999999999998888 9999999999722211100
Q ss_pred ccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCCCCeeEEEecCCcceeEEecCCCEEEEEec
Q 043350 419 GAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGNGNRVSDILHHQCAVQCFCTYGSRMYVGYV 497 (1133)
Q Consensus 419 ~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g~~l~~~~~h~~~V~~fs~dg~~Lasgs~ 497 (1133)
...+-+ ....+|..+....+. -++++..|+.|+-|...... .+++.|++.. -+.
T Consensus 289 -----~~tlic-------k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~------------~l~~s~~~~~-~~T 343 (735)
T KOG0308|consen 289 -----KSTLIC-------KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI------------ALSVSGDLDF-FST 343 (735)
T ss_pred -----hheEee-------cCCCchhhhhhccccCCceeeeccccceecCCcccc------------ccccCCCCCc-ccc
Confidence 000111 122233333333333 45889999999999764321 2344444444 344
Q ss_pred CCeEEEEeCCCCcceeeeccccCeEEeeec-ccceeeecccCCeeeccccCCCCchhhh
Q 043350 498 SGYLQILDLDGNLTASWIAHSSPVLKLAVG-VDHIYSLAAHGGIRGWTFTSPSPLDNII 555 (1133)
Q Consensus 498 DG~I~vwd~~g~~l~~~~~H~~~V~~l~fs-~~~L~S~s~Dg~I~lW~l~s~~~ld~~i 555 (1133)
|....+.+...++-....|-..-+.+-..+ .++++|=..+|.+.+||+.....++++-
T Consensus 344 ~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g 402 (735)
T KOG0308|consen 344 DSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG 402 (735)
T ss_pred cCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence 555556665444433333322222222223 8889999999999999998876665544
No 66
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=1.7e-21 Score=221.81 Aligned_cols=409 Identities=14% Similarity=0.169 Sum_probs=273.6
Q ss_pred CCCCCCCCCcccccCCCCC---EEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEEeCCCCeEE--e
Q 043350 98 GPDAADDQQQHKPFQPMVE---FIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIACTDTQLWA--G 172 (1133)
Q Consensus 98 ~~~~~~~~~~~~~~~p~g~---~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~s~dg~lla--s 172 (1133)
||.+++...+ +-|+.+ ++++|+.||.|++|.+. ...-..+.++.+|.. .+.++. ....... +
T Consensus 52 GH~a~VnC~~---~l~~s~~~a~~vsG~sD~~v~lW~l~--~~~~~~i~~~~g~~~-------~~~cv~-a~~~~~~~~~ 118 (764)
T KOG1063|consen 52 GHVARVNCVH---WLPTSEIVAEMVSGDSDGRVILWKLR--DEYLIKIYTIQGHCK-------ECVCVV-ARSSVMTCKA 118 (764)
T ss_pred CCccceEEEE---EcccccccceEEEccCCCcEEEEEEe--ehheEEEEeecCcce-------eEEEEE-eeeeEEEeec
Confidence 8888887744 344444 89999999999999876 113333567777766 555554 2222222 7
Q ss_pred cCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCC-CC-EEEEEeCCCeEEEEeCCCCCCCCCC
Q 043350 173 QECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCG-NR-LVWTGHKDGKIRSWKMDQTLDDANN 250 (1133)
Q Consensus 173 ~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd-~~-~LaSgs~Dg~V~vWd~~~~~~~~~~ 250 (1133)
.|+++.+|+.+... .+..+ .+.....+--..|+++.++ +. ++|.|+.+..|.++.-...
T Consensus 119 ad~~v~vw~~~~~e-~~~~~------------~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d------ 179 (764)
T KOG1063|consen 119 ADGTVSVWDKQQDE-VFLLA------------VLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSAD------ 179 (764)
T ss_pred cCceEEEeecCCCc-eeeeh------------heehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCc------
Confidence 89999999985421 00000 1111111222356666663 33 4577778888888876531
Q ss_pred CcccccccccCCCCeEEEEEeeCCc----EEEEeCCCcEEEEeCCCC---------------------------------
Q 043350 251 PFKEGLSWQAHRGPVLAMIFSSQGD----LWSGGEGGVIKIWPWESI--------------------------------- 293 (1133)
Q Consensus 251 ~~~~~~~l~gH~~~V~sl~fsp~g~----L~Sgs~DgtI~iWdl~~~--------------------------------- 293 (1133)
.+.....+.||.+.|.+|+|...+. |+|+|.|..||||.+.-.
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 3578889999999999999987643 999999999999976421
Q ss_pred ----------ceeeEeCCCCceEEEEeecce--EEEccCc--e-----eeeccccCCCCCeEEEEecCCceEEEecCCCc
Q 043350 294 ----------EKSLSLKPEEKHMAALLVERS--FIDLRAQ--V-----TVNGACSISSTEIKCMLSDHARARVWCAQPLS 354 (1133)
Q Consensus 294 ----------~~~l~~~~~~~~l~s~~~d~s--~~d~~~~--~-----~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~ 354 (1133)
+.++.++|.+..+++++.|++ +|..... . .+..+.....+-.-.+.+.++...+-.+..|.
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG 339 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence 334556677777888888888 4444322 1 22222211111122333444444444477788
Q ss_pred eeEeecCCC---ceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccc---cc-cccccc------------
Q 043350 355 FSLWDARSK---ELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPH---GF-LQRSRN------------ 415 (1133)
Q Consensus 355 I~lWD~~tg---~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~---~~-~~~~~~------------ 415 (1133)
.++|-..+. .....+.+|-..|..++|+|.|++ +++.|.|.+.+ .| .+....
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGef---------lLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl 410 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEF---------LLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDL 410 (764)
T ss_pred EEEEeccCccceeeccccccccccceeeeecCCCCE---------EEEeccccceeeecccccccceeeecccccccccc
Confidence 888873322 233466889999999999999999 88888888877 22 000000
Q ss_pred -----------eeeccCCceEEEEEec----------------------CCc----------------------------
Q 043350 416 -----------AIMGAADAVRRVATRG----------------------AGA---------------------------- 434 (1133)
Q Consensus 416 -----------~~~~~~~~V~~v~~~p----------------------~g~---------------------------- 434 (1133)
-+.+....|.++---| +|.
T Consensus 411 ~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e 490 (764)
T KOG1063|consen 411 TCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE 490 (764)
T ss_pred eeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence 0011111111111000 000
Q ss_pred ------------------------------ccCCCCCEEEEEECCCC-eEEEEecC-----CeEEEEeCCC-CeeEEEec
Q 043350 435 ------------------------------FVDDTKRTEAMVLTADG-MIWSGCTN-----GLLVQWDGNG-NRVSDILH 477 (1133)
Q Consensus 435 ------------------------------~~~h~~~V~sl~~spdg-~L~sgs~D-----G~I~vWd~~g-~~l~~~~~ 477 (1133)
+-+|.-.|.+++.+|+| .+++++.. ..|++|+... ...+.+..
T Consensus 491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~ 570 (764)
T KOG1063|consen 491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG 570 (764)
T ss_pred cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc
Confidence 56788899999999999 99998864 3599999954 66678999
Q ss_pred CCcceeE--EecCCCEEEEEecCCeEEEEeCCCCc-----ceeeeccccCeEEeeec--ccceeeecccCCeeeccccC
Q 043350 478 HQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGNL-----TASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 478 h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~~-----l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s 547 (1133)
|+-.|+. |||||++|++.|.|+++.+|...... ....+.|+-.|++..|+ ..+++|+|.|.+|++|....
T Consensus 571 HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 571 HSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPD 649 (764)
T ss_pred cceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccC
Confidence 9999998 99999999999999999999985321 33477899999999999 77799999999999998654
No 67
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=7.8e-22 Score=205.25 Aligned_cols=306 Identities=19% Similarity=0.234 Sum_probs=226.2
Q ss_pred CEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEEeCCC-CeEE--ecCCcEEEeeCCCCCCcCcCC
Q 043350 116 EFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIACTDT-QLWA--GQECGVRFWNLEDSYEPGAGI 192 (1133)
Q Consensus 116 ~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~s~dg-~lla--s~Dg~VrvWdl~~~~~~~~gh 192 (1133)
..|++.-.+++++.- . +.++.||.. .|+.++...+ .++. +.|.+.+||.++...+..
T Consensus 125 srivssFk~~t~~~~---------l-vre~~GHkD-------GiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~--- 184 (481)
T KOG0300|consen 125 SRIVSSFKDGTVKFR---------L-VRELEGHKD-------GIWHVAADSTQPICGTASADHTARIWSLESGACLA--- 184 (481)
T ss_pred chheeeecCCceeEe---------e-hhhhccccc-------ceeeehhhcCCcceeecccccceeEEeecccccee---
Confidence 356666666664322 2 557889999 9999993333 3444 899999999998854432
Q ss_pred CccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC----CCC--------------C-------
Q 043350 193 GGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQ----TLD--------------D------- 247 (1133)
Q Consensus 193 ~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~----~~~--------------~------- 247 (1133)
.+.+|.+.|+|+.|++.+.++++|+.|++..||...- ... .
T Consensus 185 --------------~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~ 250 (481)
T KOG0300|consen 185 --------------TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDT 250 (481)
T ss_pred --------------eecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccc
Confidence 5778999999999999999999999999999998311 000 0
Q ss_pred ------CC-CCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEcc
Q 043350 248 ------AN-NPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLR 319 (1133)
Q Consensus 248 ------~~-~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~ 319 (1133)
+. .-..++..+.+|.+.|.+..|...|+ ++|+|+|.+..
T Consensus 251 d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn--------------------------------- 297 (481)
T KOG0300|consen 251 DSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN--------------------------------- 297 (481)
T ss_pred ccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce---------------------------------
Confidence 00 00112334555666666666655555 55555555554
Q ss_pred CceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEe
Q 043350 320 AQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVS 399 (1133)
Q Consensus 320 ~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~las 399 (1133)
+||+.+|+++..+.+|....+.++-+|..++ +++
T Consensus 298 -------------------------------------lwDVEtge~v~~LtGHd~ELtHcstHptQrL---------VvT 331 (481)
T KOG0300|consen 298 -------------------------------------LWDVETGEVVNILTGHDSELTHCSTHPTQRL---------VVT 331 (481)
T ss_pred -------------------------------------eeeeccCceeccccCcchhccccccCCcceE---------EEE
Confidence 4555678888899999999999999999999 999
Q ss_pred eCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeCCC--CeeEEEec
Q 043350 400 SNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGNG--NRVSDILH 477 (1133)
Q Consensus 400 gs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~g--~~l~~~~~ 477 (1133)
+|.|-+.+.|+-+. .|.+++. |.+|...|+++.|..+..+++|+.|.+|++||+.. ..+.++..
T Consensus 332 sSrDtTFRLWDFRe---------aI~sV~V-----FQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRt 397 (481)
T KOG0300|consen 332 SSRDTTFRLWDFRE---------AIQSVAV-----FQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRT 397 (481)
T ss_pred eccCceeEeccchh---------hcceeee-----ecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeec
Confidence 99999998665431 2223322 46777777777777888999999999999999944 56777765
Q ss_pred CCcceeE--EecCCCEEEEEecCCeEEEEeCCCCcce-----eeeccccCeEEeeec----ccceeeecccCCeeecccc
Q 043350 478 HQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGNLTA-----SWIAHSSPVLKLAVG----VDHIYSLAAHGGIRGWTFT 546 (1133)
Q Consensus 478 h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~~l~-----~~~~H~~~V~~l~fs----~~~L~S~s~Dg~I~lW~l~ 546 (1133)
.++++. ++..+..||.--.+..|++||+.|+-+. .-++|...|.+++|. ---|++||.|..+..|++.
T Consensus 398 -dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 398 -DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred -CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence 445555 7777889999999999999999986443 456899999999999 3458999999999999998
Q ss_pred CCC
Q 043350 547 SPS 549 (1133)
Q Consensus 547 s~~ 549 (1133)
.|.
T Consensus 477 ~p~ 479 (481)
T KOG0300|consen 477 TPT 479 (481)
T ss_pred ccC
Confidence 764
No 68
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.89 E-value=1e-21 Score=233.99 Aligned_cols=276 Identities=17% Similarity=0.313 Sum_probs=221.7
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccc-cccCCCCeEEEEEeeCCc-EEEEeCCCcEEEE
Q 043350 211 NTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLS-WQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIW 288 (1133)
Q Consensus 211 h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~-l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iW 288 (1133)
+...+.|..|. ...+++++.|++|++|+... ...+.. +.||.+.|++++|..-+. |++||.|.++++|
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~--------~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvW 276 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNN--------GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVW 276 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeeccc--------ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeE
Confidence 45678899887 67889999999999999875 144555 999999999999987455 9999999999999
Q ss_pred eCCCCcee--eEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCcee
Q 043350 289 PWESIEKS--LSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELL 366 (1133)
Q Consensus 289 dl~~~~~~--l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l 366 (1133)
|..++.-. +..+..... .++. ....+.++ +.|.+|++|++.++.++
T Consensus 277 d~~sg~C~~~l~gh~stv~---------~~~~---------------~~~~~~sg--------s~D~tVkVW~v~n~~~l 324 (537)
T KOG0274|consen 277 DCSTGECTHSLQGHTSSVR---------CLTI---------------DPFLLVSG--------SRDNTVKVWDVTNGACL 324 (537)
T ss_pred ecCCCcEEEEecCCCceEE---------EEEc---------------cCceEeec--------cCCceEEEEeccCcceE
Confidence 98875333 333333332 2221 12334445 78999999999999999
Q ss_pred EEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEE
Q 043350 367 KVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMV 446 (1133)
Q Consensus 367 ~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~ 446 (1133)
..+.+|...|.++... +.+ +++|+.|++|+.|+....+. + ..+.+|..+|.++.
T Consensus 325 ~l~~~h~~~V~~v~~~--~~~---------lvsgs~d~~v~VW~~~~~~c----------l-----~sl~gH~~~V~sl~ 378 (537)
T KOG0274|consen 325 NLLRGHTGPVNCVQLD--EPL---------LVSGSYDGTVKVWDPRTGKC----------L-----KSLSGHTGRVYSLI 378 (537)
T ss_pred EEeccccccEEEEEec--CCE---------EEEEecCceEEEEEhhhcee----------e-----eeecCCcceEEEEE
Confidence 9999999999999998 667 99999999997665442111 1 11456777777776
Q ss_pred ECCCCeEEEEecCCeEEEEeCCC--CeeEEEecCCcceeEEecCCCEEEEEecCCeEEEEeCC-CCcceeeec-cccCeE
Q 043350 447 LTADGMIWSGCTNGLLVQWDGNG--NRVSDILHHQCAVQCFCTYGSRMYVGYVSGYLQILDLD-GNLTASWIA-HSSPVL 522 (1133)
Q Consensus 447 ~spdg~L~sgs~DG~I~vWd~~g--~~l~~~~~h~~~V~~fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~-H~~~V~ 522 (1133)
+.....+++|+.|++|++||+.+ +|+.++.+|..-|.++...+++|++++.||+|++||.+ ++.+.++.+ |.+.|.
T Consensus 379 ~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~ 458 (537)
T KOG0274|consen 379 VDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVS 458 (537)
T ss_pred ecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeeeeccCCcccEE
Confidence 66656899999999999999944 69999999999998899999999999999999999987 678888888 789999
Q ss_pred EeeecccceeeecccCCeeeccccCCCCchhh
Q 043350 523 KLAVGVDHIYSLAAHGGIRGWTFTSPSPLDNI 554 (1133)
Q Consensus 523 ~l~fs~~~L~S~s~Dg~I~lW~l~s~~~ld~~ 554 (1133)
.+++....+++++.||.+++||+.+.......
T Consensus 459 ~l~~~~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 459 ALALGKEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred EeecCcceEEEEecCCeeEEEecccCchhhhh
Confidence 99988789999999999999999886655444
No 69
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.89 E-value=1.4e-21 Score=208.32 Aligned_cols=291 Identities=16% Similarity=0.165 Sum_probs=224.1
Q ss_pred ceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCC
Q 043350 205 PFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGG 283 (1133)
Q Consensus 205 ~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~Dg 283 (1133)
...+..|..+|.+++.+|+.++++||+.|-...+|++..+ .....+.+|.+.|+++.|+.+|. |+||..+|
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g--------e~~~eltgHKDSVt~~~FshdgtlLATGdmsG 128 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG--------EFAGELTGHKDSVTCCSFSHDGTLLATGDMSG 128 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC--------cceeEecCCCCceEEEEEccCceEEEecCCCc
Confidence 3446679999999999999999999999999999999862 34668899999999999999999 99999999
Q ss_pred cEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCC
Q 043350 284 VIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSK 363 (1133)
Q Consensus 284 tI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg 363 (1133)
.|+||+..++.....+..... .+.-+++|| ...+++.+ +.||.+-+|.+.++
T Consensus 129 ~v~v~~~stg~~~~~~~~e~~------------------dieWl~WHp--~a~illAG--------~~DGsvWmw~ip~~ 180 (399)
T KOG0296|consen 129 KVLVFKVSTGGEQWKLDQEVE------------------DIEWLKWHP--RAHILLAG--------STDGSVWMWQIPSQ 180 (399)
T ss_pred cEEEEEcccCceEEEeecccC------------------ceEEEEecc--cccEEEee--------cCCCcEEEEECCCc
Confidence 999999987433322211100 111223333 45556666 78899999999998
Q ss_pred ceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEE
Q 043350 364 ELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTE 443 (1133)
Q Consensus 364 ~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~ 443 (1133)
...+.+.+|+.++++=.|.|+|+. ++++..||+|+.|+.+..+.+. .+. ........
T Consensus 181 ~~~kv~~Gh~~~ct~G~f~pdGKr---------~~tgy~dgti~~Wn~ktg~p~~-------~~~-------~~e~~~~~ 237 (399)
T KOG0296|consen 181 ALCKVMSGHNSPCTCGEFIPDGKR---------ILTGYDDGTIIVWNPKTGQPLH-------KIT-------QAEGLELP 237 (399)
T ss_pred ceeeEecCCCCCcccccccCCCce---------EEEEecCceEEEEecCCCceeE-------Eec-------ccccCcCC
Confidence 999999999999999999999999 9999999999977765433221 111 01123345
Q ss_pred EEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEec--------CCcceeE-----EecCCCEEEEEecCCeEEEEeCCC
Q 043350 444 AMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILH--------HQCAVQC-----FCTYGSRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 444 sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~--------h~~~V~~-----fs~dg~~Lasgs~DG~I~vwd~~g 508 (1133)
++.++..+ .+++|+.++.+++-+. .|+.+....+ +...+.| +|..=.+.|+|+.||+|.|||+..
T Consensus 238 ~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~ 317 (399)
T KOG0296|consen 238 CISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAA 317 (399)
T ss_pred ccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEeccc
Confidence 66677777 8888999999888877 6776666552 3333444 444456889999999999999987
Q ss_pred CcceeeeccccCeEEeeec-ccceeeecccCCeeeccccCCCCchhh
Q 043350 509 NLTASWIAHSSPVLKLAVG-VDHIYSLAAHGGIRGWTFTSPSPLDNI 554 (1133)
Q Consensus 509 ~~l~~~~~H~~~V~~l~fs-~~~L~S~s~Dg~I~lW~l~s~~~ld~~ 554 (1133)
.-++..-.|..+|+.+.|. ..+|++++.||.|+.||..+....-.+
T Consensus 318 ~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y 364 (399)
T KOG0296|consen 318 STLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTY 364 (399)
T ss_pred chhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEE
Confidence 6677777899999999999 599999999999999998876554333
No 70
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.88 E-value=6.3e-21 Score=221.21 Aligned_cols=383 Identities=14% Similarity=0.205 Sum_probs=281.9
Q ss_pred CEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCC
Q 043350 116 EFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGI 192 (1133)
Q Consensus 116 ~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh 192 (1133)
..|+.|+.+|.+.||+..+ ++. +.+++++.. .|+++. +|--.++| ..+|+|.++++......
T Consensus 173 NKIvvGs~~G~lql~Nvrt---~K~-v~~f~~~~s-------~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil---- 237 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRT---GKV-VYTFQEFFS-------RITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL---- 237 (910)
T ss_pred eeEEEeecCCcEEEEEecc---CcE-EEEeccccc-------ceeEeccCCcceEEEEeccCceEEEEEcccCcEE----
Confidence 3578999999999999884 666 999999998 899999 99888999 67999999999763221
Q ss_pred CccccCCCCCCCceeeccCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCCCCCCCccccc-ccccCCCCeEEEEE
Q 043350 193 GGRVRRGDEDAAPFYESANTSPTMCLMVDCGNR-LVWTGHKDGKIRSWKMDQTLDDANNPFKEGL-SWQAHRGPVLAMIF 270 (1133)
Q Consensus 193 ~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~-~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~-~l~gH~~~V~sl~f 270 (1133)
..+....++|+.++|..||. ++|+|+..|.+.+||++. . +... ....|.+.|....|
T Consensus 238 -------------~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~-----k---kl~~v~~nah~~sv~~~~f 296 (910)
T KOG1539|consen 238 -------------MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEK-----K---KLINVTRNAHYGSVTGATF 296 (910)
T ss_pred -------------EEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCC-----C---eeeeeeeccccCCccccee
Confidence 12222358999999999876 568888889999999997 1 2222 34489999999999
Q ss_pred eeCCc-EEEEeCCCcEEEEeCCCC----------------ceeeEeC-CCCceEEEEeecceEEEccCc-----------
Q 043350 271 SSQGD-LWSGGEGGVIKIWPWESI----------------EKSLSLK-PEEKHMAALLVERSFIDLRAQ----------- 321 (1133)
Q Consensus 271 sp~g~-L~Sgs~DgtI~iWdl~~~----------------~~~l~~~-~~~~~l~s~~~d~s~~d~~~~----------- 321 (1133)
.|... |+|++.|+.+++|=.+++ +..+.+. ..+..+.+...|++++.+...
T Consensus 297 l~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~ 376 (910)
T KOG1539|consen 297 LPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQL 376 (910)
T ss_pred cCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccc
Confidence 98777 999999999999976641 1223333 456667777777774444311
Q ss_pred ------eeeecc--ccCCCCCeEEEEecCCceEEEe------cCCCceeEeecCCCce-eEEE-----ecCCcceeEEEe
Q 043350 322 ------VTVNGA--CSISSTEIKCMLSDHARARVWC------AQPLSFSLWDARSKEL-LKVF-----NIEGHIENRVDT 381 (1133)
Q Consensus 322 ------~~v~~~--~~~~~~~~~~l~S~d~~i~vws------s~d~~I~lWD~~tg~~-l~~~-----~~h~~~v~~l~~ 381 (1133)
+.++.. .....+....+++...+.+-|+ -.+...+.|+.++... -.++ +.....+++++.
T Consensus 377 ~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~v 456 (910)
T KOG1539|consen 377 HNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCV 456 (910)
T ss_pred ccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEE
Confidence 011111 1112445555566555555554 3567788899886554 2222 223456889999
Q ss_pred CCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCC
Q 043350 382 QSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNG 460 (1133)
Q Consensus 382 sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG 460 (1133)
++.|.+ .+.|+..|+|-.+..+ ..+.+-.| |.-..|.+.|..++...-+ .+++++.+|
T Consensus 457 s~CGNF---------~~IG~S~G~Id~fNmQ---------SGi~r~sf---~~~~ah~~~V~gla~D~~n~~~vsa~~~G 515 (910)
T KOG1539|consen 457 SFCGNF---------VFIGYSKGTIDRFNMQ---------SGIHRKSF---GDSPAHKGEVTGLAVDGTNRLLVSAGADG 515 (910)
T ss_pred eccCce---------EEEeccCCeEEEEEcc---------cCeeeccc---ccCccccCceeEEEecCCCceEEEccCcc
Confidence 999999 9999999999533322 12222222 1124788889999888777 899999999
Q ss_pred eEEEEeCCC-CeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCC-CcceeeeccccCeEEeeec--ccceeee
Q 043350 461 LLVQWDGNG-NRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG-NLTASWIAHSSPVLKLAVG--VDHIYSL 534 (1133)
Q Consensus 461 ~I~vWd~~g-~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g-~~l~~~~~H~~~V~~l~fs--~~~L~S~ 534 (1133)
.+++||.++ ..+.++.. ...+.+ .+.....+|++..|-.|.++|+.. +.+..|.||.+.|++++|+ |++|+++
T Consensus 516 ilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisa 594 (910)
T KOG1539|consen 516 ILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISA 594 (910)
T ss_pred eEEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEe
Confidence 999999966 44555543 334455 777888999999999999999875 6788999999999999999 9999999
Q ss_pred cccCCeeeccccCCCCchhhhH
Q 043350 535 AAHGGIRGWTFTSPSPLDNIIR 556 (1133)
Q Consensus 535 s~Dg~I~lW~l~s~~~ld~~i~ 556 (1133)
+.|++||+||+.+...+|.++-
T Consensus 595 smD~tIr~wDlpt~~lID~~~v 616 (910)
T KOG1539|consen 595 SMDSTIRTWDLPTGTLIDGLLV 616 (910)
T ss_pred ecCCcEEEEeccCcceeeeEec
Confidence 9999999999999888876553
No 71
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.5e-21 Score=198.66 Aligned_cols=232 Identities=15% Similarity=0.160 Sum_probs=190.4
Q ss_pred CCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEE
Q 043350 212 TSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIW 288 (1133)
Q Consensus 212 ~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iW 288 (1133)
...+..++|++ ..+.+++++.||++++||+.. +..++..++.|...|.++.|++..+ ++++|.|++||+|
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~-------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW 132 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTM-------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLW 132 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCC-------CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEee
Confidence 34688999999 577889999999999999654 2268889999999999999998755 8888999999999
Q ss_pred eCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEE
Q 043350 289 PWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKV 368 (1133)
Q Consensus 289 dl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~ 368 (1133)
+.. -++.+++
T Consensus 133 ~~~----------------------------------------------------------------------r~~Sv~T 142 (311)
T KOG0277|consen 133 DPN----------------------------------------------------------------------RPNSVQT 142 (311)
T ss_pred cCC----------------------------------------------------------------------CCcceEe
Confidence 863 2334567
Q ss_pred EecCCcceeEEEeCCC-CCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEE
Q 043350 369 FNIEGHIENRVDTQSV-QDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVL 447 (1133)
Q Consensus 369 ~~~h~~~v~~l~~sp~-g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~ 447 (1133)
|.+|...|....|+|. +.. ++++|.|++++.|+-+.-... +. +..|...|.++.+
T Consensus 143 f~gh~~~Iy~a~~sp~~~nl---------fas~Sgd~~l~lwdvr~~gk~---------~~------i~ah~~Eil~cdw 198 (311)
T KOG0277|consen 143 FNGHNSCIYQAAFSPHIPNL---------FASASGDGTLRLWDVRSPGKF---------MS------IEAHNSEILCCDW 198 (311)
T ss_pred ecCCccEEEEEecCCCCCCe---------EEEccCCceEEEEEecCCCce---------eE------EEeccceeEeecc
Confidence 8889999999999994 567 999999999986664421110 00 2345566777777
Q ss_pred CCCC--eEEEEecCCeEEEEeCCC--CeeEEEecCCcceeE--EecCC-CEEEEEecCCeEEEEeCCC--Ccceeeeccc
Q 043350 448 TADG--MIWSGCTNGLLVQWDGNG--NRVSDILHHQCAVQC--FCTYG-SRMYVGYVSGYLQILDLDG--NLTASWIAHS 518 (1133)
Q Consensus 448 spdg--~L~sgs~DG~I~vWd~~g--~~l~~~~~h~~~V~~--fs~dg-~~Lasgs~DG~I~vwd~~g--~~l~~~~~H~ 518 (1133)
+.-. .|+||+.|+.|+.||+.. .++.++.+|..+|.. |||.. ..||+++.|-+++|||.+. ..+.+...|+
T Consensus 199 ~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht 278 (311)
T KOG0277|consen 199 SKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHT 278 (311)
T ss_pred cccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccc
Confidence 6654 999999999999999943 788899999999998 88865 5899999999999999873 4667778899
Q ss_pred cCeEEeeec---ccceeeecccCCeeecc
Q 043350 519 SPVLKLAVG---VDHIYSLAAHGGIRGWT 544 (1133)
Q Consensus 519 ~~V~~l~fs---~~~L~S~s~Dg~I~lW~ 544 (1133)
+-|..+.|+ +.++++++.|+.+.+|+
T Consensus 279 EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 279 EFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred eEEeccccccccCceeeecccccceeeec
Confidence 999999999 89999999999999998
No 72
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.88 E-value=3e-21 Score=229.96 Aligned_cols=293 Identities=18% Similarity=0.263 Sum_probs=224.7
Q ss_pred CCCEEEEecCCCeEEeccCCCCCCCCCCeee-eccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcC
Q 043350 114 MVEFIGSGGGTGIFKVPSRAAVHPGRPPCLE-LRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPG 189 (1133)
Q Consensus 114 ~g~~lasgs~dg~irlW~~~~~~~g~~~~~~-l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~ 189 (1133)
.+.++.+++.++++++|+... +.. +.. +.+|.+ .|++++ ...+.+++ +.|.++++||..+..++
T Consensus 217 ~~~~~~~~s~~~tl~~~~~~~---~~~-i~~~l~GH~g-------~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~- 284 (537)
T KOG0274|consen 217 HDGFFKSGSDDSTLHLWDLNN---GYL-ILTRLVGHFG-------GVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT- 284 (537)
T ss_pred ecCeEEecCCCceeEEeeccc---ceE-EEeeccCCCC-------CceeEEEecCCCEEEEEecCCcEEeEecCCCcEE-
Confidence 367899999999999999874 666 555 999999 999999 44445555 78999999998775442
Q ss_pred cCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEE
Q 043350 190 AGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMI 269 (1133)
Q Consensus 190 ~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~ 269 (1133)
.++.+|.+.|.|+... ...+++|+.|.+|++|+++.+ ..+..+.+|.++|++|.
T Consensus 285 ----------------~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~--------~~l~l~~~h~~~V~~v~ 338 (537)
T KOG0274|consen 285 ----------------HSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNG--------ACLNLLRGHTGPVNCVQ 338 (537)
T ss_pred ----------------EEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCc--------ceEEEeccccccEEEEE
Confidence 2455788889998874 567889999999999999962 45667778999999999
Q ss_pred EeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEE
Q 043350 270 FSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVW 348 (1133)
Q Consensus 270 fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vw 348 (1133)
.. +. +++|+.|++|++||+
T Consensus 339 ~~--~~~lvsgs~d~~v~VW~~---------------------------------------------------------- 358 (537)
T KOG0274|consen 339 LD--EPLLVSGSYDGTVKVWDP---------------------------------------------------------- 358 (537)
T ss_pred ec--CCEEEEEecCceEEEEEh----------------------------------------------------------
Confidence 87 56 999999999999886
Q ss_pred ecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccccc----ccceeeccCCce
Q 043350 349 CAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQR----SRNAIMGAADAV 424 (1133)
Q Consensus 349 ss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~----~~~~~~~~~~~V 424 (1133)
.++++++++.+|...|.++.+.+. .. +++|+.|++|+.|+.+ ...++.+|..-+
T Consensus 359 ------------~~~~cl~sl~gH~~~V~sl~~~~~-~~---------~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v 416 (537)
T KOG0274|consen 359 ------------RTGKCLKSLSGHTGRVYSLIVDSE-NR---------LLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV 416 (537)
T ss_pred ------------hhceeeeeecCCcceEEEEEecCc-ce---------EEeeeeccceEeecCCchhhhhhhhcCCcccc
Confidence 457888999999999999988775 56 8999999999966644 344455555444
Q ss_pred EEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeC-CCCeeEEEec-CCcceeEEecCCCEEEEEecCCeEE
Q 043350 425 RRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDG-NGNRVSDILH-HQCAVQCFCTYGSRMYVGYVSGYLQ 502 (1133)
Q Consensus 425 ~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~-~g~~l~~~~~-h~~~V~~fs~dg~~Lasgs~DG~I~ 502 (1133)
..+.+. +..|++++.||+|++||. ++++++++.+ |...|.++......+++++.||+++
T Consensus 417 ~~l~~~-------------------~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~ 477 (537)
T KOG0274|consen 417 SSLLLR-------------------DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVK 477 (537)
T ss_pred cccccc-------------------cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeE
Confidence 333322 227999999999999999 7899999999 7789998777677899999999999
Q ss_pred EEeCC-CCcceeeeccccCeEEeeecccceeeecccCCeeeccc
Q 043350 503 ILDLD-GNLTASWIAHSSPVLKLAVGVDHIYSLAAHGGIRGWTF 545 (1133)
Q Consensus 503 vwd~~-g~~l~~~~~H~~~V~~l~fs~~~L~S~s~Dg~I~lW~l 545 (1133)
+||+. +++...+..+....+.-.......+++...+....|-.
T Consensus 478 l~dl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (537)
T KOG0274|consen 478 LWDLRSGTLIRTLLSTDLGATWGVAPSSPSFSTANVEAVQSWIL 521 (537)
T ss_pred EEecccCchhhhhhhcccccccccccCCCcccccccccccccee
Confidence 99997 56666665555433333333444444555555555543
No 73
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.88 E-value=6.9e-22 Score=205.97 Aligned_cols=276 Identities=18% Similarity=0.257 Sum_probs=206.3
Q ss_pred CCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeee--------ccCCCccccccceEEEEE-eCCCC
Q 043350 98 GPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLEL--------RPHPLKETQAGRFLRNIA-CTDTQ 168 (1133)
Q Consensus 98 ~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l--------~~H~~~~~~~g~~V~~v~-s~dg~ 168 (1133)
|...++.. ..|+|||+||++||.||.|.+|+..+ |+. ...| --|.. +|.|+. +.|..
T Consensus 211 g~KSh~Ec---A~FSPDgqyLvsgSvDGFiEVWny~~---GKl-rKDLkYQAqd~fMMmd~-------aVlci~FSRDsE 276 (508)
T KOG0275|consen 211 GQKSHVEC---ARFSPDGQYLVSGSVDGFIEVWNYTT---GKL-RKDLKYQAQDNFMMMDD-------AVLCISFSRDSE 276 (508)
T ss_pred ccccchhh---eeeCCCCceEeeccccceeeeehhcc---chh-hhhhhhhhhcceeeccc-------ceEEEeecccHH
Confidence 44344444 78999999999999999999999764 443 2222 23444 899999 99999
Q ss_pred eEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC
Q 043350 169 LWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLD 246 (1133)
Q Consensus 169 lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~ 246 (1133)
++| +.||.|+||.+.+..+.. . -...|...|+|+.|+.|+..+.+++.|.++||--+..+
T Consensus 277 MlAsGsqDGkIKvWri~tG~ClR---------------r-FdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG-- 338 (508)
T KOG0275|consen 277 MLASGSQDGKIKVWRIETGQCLR---------------R-FDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG-- 338 (508)
T ss_pred HhhccCcCCcEEEEEEecchHHH---------------H-hhhhhccCeeEEEEccCcchhhcccccceEEEeccccc--
Confidence 999 889999999998843321 0 12368889999999999999999999999999998762
Q ss_pred CCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeee
Q 043350 247 DANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVN 325 (1133)
Q Consensus 247 ~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~ 325 (1133)
+.+..+.||+..|+...|+++|. ++|+|.||+|++|+..+
T Consensus 339 ------K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt--------------------------------- 379 (508)
T KOG0275|consen 339 ------KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKT--------------------------------- 379 (508)
T ss_pred ------hhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcc---------------------------------
Confidence 56788999999999999999999 99999999999998754
Q ss_pred ccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecC--CcceeEEEeCC-CCCccccccceEEEEeeCC
Q 043350 326 GACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIE--GHIENRVDTQS-VQDQPVEDEMKVKFVSSNK 402 (1133)
Q Consensus 326 ~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h--~~~v~~l~~sp-~g~~~~e~e~~v~lasgs~ 402 (1133)
++++.+|... ...|+.+-.-| +... ++.+..
T Consensus 380 -------------------------------------teC~~Tfk~~~~d~~vnsv~~~PKnpeh---------~iVCNr 413 (508)
T KOG0275|consen 380 -------------------------------------TECLSTFKPLGTDYPVNSVILLPKNPEH---------FIVCNR 413 (508)
T ss_pred -------------------------------------hhhhhhccCCCCcccceeEEEcCCCCce---------EEEEcC
Confidence 2222222221 12344444444 3344 667777
Q ss_pred CCccc--cccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecC
Q 043350 403 KEKPH--GFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHH 478 (1133)
Q Consensus 403 Dg~i~--~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h 478 (1133)
.++++ +..+. |.+--.+ | ....+...+.+.+|.| ++++.++|+.++.|.. +|++-.++..|
T Consensus 414 sntv~imn~qGQ-----------vVrsfsS--G--kREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh 478 (508)
T KOG0275|consen 414 SNTVYIMNMQGQ-----------VVRSFSS--G--KREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH 478 (508)
T ss_pred CCeEEEEeccce-----------EEeeecc--C--CccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecc
Confidence 77664 22222 2111111 1 1223345566689999 9999999999999998 88888899988
Q ss_pred CcceeE--EecCCCEEEEEecCCeEEEEe
Q 043350 479 QCAVQC--FCTYGSRMYVGYVSGYLQILD 505 (1133)
Q Consensus 479 ~~~V~~--fs~dg~~Lasgs~DG~I~vwd 505 (1133)
...|.. -+|..+.||+=+.||.+++|.
T Consensus 479 EkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 479 EKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccccccccCcccchhhhhcccchhhhcC
Confidence 888877 677888999999999999995
No 74
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.5e-21 Score=228.84 Aligned_cols=205 Identities=14% Similarity=0.189 Sum_probs=156.9
Q ss_pred eeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCc
Q 043350 207 YESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGV 284 (1133)
Q Consensus 207 ~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~Dgt 284 (1133)
.+.+|...|..|.|+. +++|+++|.|.|||+|++.. +..+....|.+.|+||+|+|..+ ++|||-||.
T Consensus 364 ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~---------~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~K 433 (712)
T KOG0283|consen 364 EFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGR---------KECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGK 433 (712)
T ss_pred hhhccchhheeccccc-CCeeEeccccccEEeecCCC---------cceeeEEecCCeeEEEEecccCCCcEeecccccc
Confidence 3567999999999996 56889999999999999987 66677788999999999999866 999999999
Q ss_pred EEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCc
Q 043350 285 IKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKE 364 (1133)
Q Consensus 285 I~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~ 364 (1133)
||||++. +..+..|. |+
T Consensus 434 vRiWsI~--------------------------------------------------d~~Vv~W~---------Dl---- 450 (712)
T KOG0283|consen 434 VRLWSIS--------------------------------------------------DKKVVDWN---------DL---- 450 (712)
T ss_pred eEEeecC--------------------------------------------------cCeeEeeh---------hh----
Confidence 9999984 22233333 11
Q ss_pred eeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEE
Q 043350 365 LLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEA 444 (1133)
Q Consensus 365 ~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~s 444 (1133)
...|++++|+|+|+. .+.|+.+|.++.++....+... -..+..++.. -..+. +|+.
T Consensus 451 --------~~lITAvcy~PdGk~---------avIGt~~G~C~fY~t~~lk~~~-----~~~I~~~~~K-k~~~~-rITG 506 (712)
T KOG0283|consen 451 --------RDLITAVCYSPDGKG---------AVIGTFNGYCRFYDTEGLKLVS-----DFHIRLHNKK-KKQGK-RITG 506 (712)
T ss_pred --------hhhheeEEeccCCce---------EEEEEeccEEEEEEccCCeEEE-----eeeEeeccCc-cccCc-eeee
Confidence 256899999999999 9999999998744333221110 1122222111 12233 7999
Q ss_pred EEECCCC--eEEEEecCCeEEEEeC-CCCeeEEEec---CCcceeE-EecCCCEEEEEecCCeEEEEeCCC
Q 043350 445 MVLTADG--MIWSGCTNGLLVQWDG-NGNRVSDILH---HQCAVQC-FCTYGSRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 445 l~~spdg--~L~sgs~DG~I~vWd~-~g~~l~~~~~---h~~~V~~-fs~dg~~Lasgs~DG~I~vwd~~g 508 (1133)
+.|.|.. .|++.+.|..|+|+|+ +..++..|++ ....+.+ |+.||++|++|+.|..|+||+...
T Consensus 507 ~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 507 LQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred eEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 9998766 6888899999999999 4567777776 3345666 999999999999999999999864
No 75
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.88 E-value=1.1e-20 Score=193.75 Aligned_cols=285 Identities=13% Similarity=0.148 Sum_probs=217.6
Q ss_pred ceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeC-CCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCC
Q 043350 205 PFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKM-DQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEG 282 (1133)
Q Consensus 205 ~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~-~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~D 282 (1133)
|..+.+|..|++-+.++.+|.+|.|++.|.++.||-. ++ ..+-++.||++.|+|+....+.+ |+|||.|
T Consensus 3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG---------erlGty~GHtGavW~~Did~~s~~liTGSAD 73 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG---------ERLGTYDGHTGAVWCCDIDWDSKHLITGSAD 73 (327)
T ss_pred ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCC---------ceeeeecCCCceEEEEEecCCcceeeecccc
Confidence 5667789999999999999999999999999999986 55 66789999999999999998888 9999999
Q ss_pred CcEEEEeCCCCceeeEeC-CCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecC
Q 043350 283 GVIKIWPWESIEKSLSLK-PEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDAR 361 (1133)
Q Consensus 283 gtI~iWdl~~~~~~l~~~-~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~ 361 (1133)
.++++||+.++.....+. +.... .+++ ......++++.|... +..+.|.++|++
T Consensus 74 ~t~kLWDv~tGk~la~~k~~~~Vk---------~~~F------------~~~gn~~l~~tD~~m----g~~~~v~~fdi~ 128 (327)
T KOG0643|consen 74 QTAKLWDVETGKQLATWKTNSPVK---------RVDF------------SFGGNLILASTDKQM----GYTCFVSVFDIR 128 (327)
T ss_pred ceeEEEEcCCCcEEEEeecCCeeE---------EEee------------ccCCcEEEEEehhhc----CcceEEEEEEcc
Confidence 999999998753322221 11111 1122 223444455554444 566789999998
Q ss_pred -------CCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCc
Q 043350 362 -------SKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGA 434 (1133)
Q Consensus 362 -------tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~ 434 (1133)
..+++..+..+...++..-|.|-+++ |++|..||.|..|+.+....+.. +
T Consensus 129 ~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~---------ii~Ghe~G~is~~da~~g~~~v~----------s---- 185 (327)
T KOG0643|consen 129 DDSSDIDSEEPYLKIPTPDSKITSALWGPLGET---------IIAGHEDGSISIYDARTGKELVD----------S---- 185 (327)
T ss_pred CChhhhcccCceEEecCCccceeeeeecccCCE---------EEEecCCCcEEEEEcccCceeee----------c----
Confidence 45667788888888999999999999 99999999997666553222111 0
Q ss_pred ccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCCC-CeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCC---
Q 043350 435 FVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGNG-NRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLD--- 507 (1133)
Q Consensus 435 ~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g-~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~--- 507 (1133)
...|...|+.+.+++|. ++++|+.|.+-++||... ++++++.. ..+|+| ++|..+.++.|+.-...-|=-..
T Consensus 186 ~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~ 264 (327)
T KOG0643|consen 186 DEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRA 264 (327)
T ss_pred hhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-cccccceecccccceEEecCCceeeeeeeecccc
Confidence 24567789999999999 999999999999999955 66666654 667887 99988888877643322222211
Q ss_pred C------------CcceeeeccccCeEEeeec--ccceeeecccCCeeeccccC
Q 043350 508 G------------NLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 508 g------------~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s 547 (1133)
| +.+...++|-+||++|+|+ |+...|++.||.||+--.++
T Consensus 265 GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 265 GKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 2 2467789999999999999 99999999999999875543
No 76
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.87 E-value=9.6e-21 Score=197.06 Aligned_cols=287 Identities=15% Similarity=0.155 Sum_probs=209.7
Q ss_pred eeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC------C----CCCCCCcccccccccCCCCeEEEEEeeCCc-
Q 043350 207 YESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQT------L----DDANNPFKEGLSWQAHRGPVLAMIFSSQGD- 275 (1133)
Q Consensus 207 ~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~------~----~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~- 275 (1133)
....|.+++.|.+|++||.++||||.|..|+|.|++.- . +.....-..+.++..|.++|+++.|+|...
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI 186 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence 44579999999999999999999999999999998621 0 111122245668899999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCC--ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCC
Q 043350 276 LWSGGEGGVIKIWPWESI--EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPL 353 (1133)
Q Consensus 276 L~Sgs~DgtI~iWdl~~~--~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~ 353 (1133)
|+||+.|++||++|+... .+.+..-.+ ...+..+..||.++..+++ ..-.
T Consensus 187 LiS~srD~tvKlFDfsK~saKrA~K~~qd------------------~~~vrsiSfHPsGefllvg----------TdHp 238 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAKRAFKVFQD------------------TEPVRSISFHPSGEFLLVG----------TDHP 238 (430)
T ss_pred EEeccCCCeEEEEecccHHHHHHHHHhhc------------------cceeeeEeecCCCceEEEe----------cCCC
Confidence 999999999999999752 111111000 0122233344555544443 3456
Q ss_pred ceeEeecCCCceeEEE---ecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEe
Q 043350 354 SFSLWDARSKELLKVF---NIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATR 430 (1133)
Q Consensus 354 ~I~lWD~~tg~~l~~~---~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~ 430 (1133)
++++||+.+-++...- ..|...|+++.+++.+.+ .++||+||.|+.|++-+.+.+.. +
T Consensus 239 ~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~l---------YvTaSkDG~IklwDGVS~rCv~t-------~--- 299 (430)
T KOG0640|consen 239 TLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSL---------YVTASKDGAIKLWDGVSNRCVRT-------I--- 299 (430)
T ss_pred ceeEEeccceeEeeecCcccccccceeEEEecCCccE---------EEEeccCCcEEeeccccHHHHHH-------H---
Confidence 7788889888876544 346778999999999999 99999999999887653332110 0
Q ss_pred cCCcccCC-CCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecC--Ccce----eE-EecCCCEEEEEe-cCC
Q 043350 431 GAGAFVDD-TKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHH--QCAV----QC-FCTYGSRMYVGY-VSG 499 (1133)
Q Consensus 431 p~g~~~~h-~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h--~~~V----~~-fs~dg~~Lasgs-~DG 499 (1133)
-..| ...|.+..|..+| +|++.+.|..+++|.+ .|.++.++.+. .+.. .+ |....+|++.-. ..+
T Consensus 300 ----~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~ 375 (430)
T KOG0640|consen 300 ----GNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASN 375 (430)
T ss_pred ----HhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccC
Confidence 0122 2457788899999 9999999999999999 77888888763 1111 12 777777776655 467
Q ss_pred eEEEEeCCCC--cceeeeccccCeEEeeec--ccceeeecccCCeeecc
Q 043350 500 YLQILDLDGN--LTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWT 544 (1133)
Q Consensus 500 ~I~vwd~~g~--~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~ 544 (1133)
.++-||.... ...--.+|.++|..+..+ +.-+++||.|-.+|+|-
T Consensus 376 slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 376 SLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred ceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 8999998742 222235899999999999 88899999999999996
No 77
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=1.1e-21 Score=208.51 Aligned_cols=275 Identities=15% Similarity=0.249 Sum_probs=207.9
Q ss_pred eccCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCcEEEEeCCCcEE
Q 043350 208 ESANTSPTMCLMVDCGN-RLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGDLWSGGEGGVIK 286 (1133)
Q Consensus 208 ~~~h~s~V~~la~spd~-~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~ 286 (1133)
+.+|...|.|++=+|.. ..++||+.||.|+|||+.. ..+..++.+|.+.|..|++.. +.++|+|.|.+|+
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq--------R~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK 132 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ--------RECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVK 132 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhh--------hhhhheeecccCceeeEEecc-cceEEecCCccee
Confidence 36788999999999966 7899999999999999986 255778999999999999986 3499999999999
Q ss_pred EEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCcee
Q 043350 287 IWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELL 366 (1133)
Q Consensus 287 iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l 366 (1133)
.|.++... .-.+..+ ..+.+++ .......++ .....|.|||..-..++
T Consensus 133 ~wk~~~~p-~~tilg~----------s~~~gId-----------h~~~~~~Fa----------TcGe~i~IWD~~R~~Pv 180 (433)
T KOG0268|consen 133 QWKIDGPP-LHTILGK----------SVYLGID-----------HHRKNSVFA----------TCGEQIDIWDEQRDNPV 180 (433)
T ss_pred eeeccCCc-ceeeecc----------ccccccc-----------ccccccccc----------ccCceeeecccccCCcc
Confidence 99987520 0000000 0022222 111111122 23456899999999999
Q ss_pred EEEecCCcceeEEEeCCCCC-ccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEE
Q 043350 367 KVFNIEGHIENRVDTQSVQD-QPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAM 445 (1133)
Q Consensus 367 ~~~~~h~~~v~~l~~sp~g~-~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl 445 (1133)
+.+.-..+.+.++.|+|... + |+++..|+.|..++.+... ++..+... -..+.+
T Consensus 181 ~smswG~Dti~svkfNpvETsI---------Las~~sDrsIvLyD~R~~~-------Pl~KVi~~---------mRTN~I 235 (433)
T KOG0268|consen 181 SSMSWGADSISSVKFNPVETSI---------LASCASDRSIVLYDLRQAS-------PLKKVILT---------MRTNTI 235 (433)
T ss_pred ceeecCCCceeEEecCCCcchh---------eeeeccCCceEEEecccCC-------ccceeeee---------ccccce
Confidence 99998888999999999654 5 7888899998766655222 23333322 234578
Q ss_pred EECCCC-eEEEEecCCeEEEEeCCC--CeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCCCcceeeeccc--
Q 043350 446 VLTADG-MIWSGCTNGLLVQWDGNG--NRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGNLTASWIAHS-- 518 (1133)
Q Consensus 446 ~~spdg-~L~sgs~DG~I~vWd~~g--~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~~l~~~~~H~-- 518 (1133)
+|+|.+ .+++|++|..++.||+.. ..+.....|.++|.. |||.|+-+++||.|.+|+||.+...-... ..|.
T Consensus 236 swnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRd-iYhtkR 314 (433)
T KOG0268|consen 236 CWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRD-IYHTKR 314 (433)
T ss_pred ecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchh-hhhHhh
Confidence 899977 899999999999999933 788888999999999 99999999999999999999987421111 1222
Q ss_pred -cCeEEeeec--ccceeeecccCCeeeccccCCC
Q 043350 519 -SPVLKLAVG--VDHIYSLAAHGGIRGWTFTSPS 549 (1133)
Q Consensus 519 -~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s~~ 549 (1133)
..|.+|.|+ .++|+|||+|+.||+|......
T Consensus 315 Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 315 MQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred hheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 468999999 9999999999999999975543
No 78
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.87 E-value=8.6e-21 Score=216.40 Aligned_cols=253 Identities=19% Similarity=0.254 Sum_probs=195.4
Q ss_pred CCCEEEEecCCCeEEeccCCCCCCCCC--CeeeeccCCCccccccceEEE-EE---eCCCCeEE-ecCCcEEEeeCCCCC
Q 043350 114 MVEFIGSGGGTGIFKVPSRAAVHPGRP--PCLELRPHPLKETQAGRFLRN-IA---CTDTQLWA-GQECGVRFWNLEDSY 186 (1133)
Q Consensus 114 ~g~~lasgs~dg~irlW~~~~~~~g~~--~~~~l~~H~~~~~~~g~~V~~-v~---s~dg~lla-s~Dg~VrvWdl~~~~ 186 (1133)
++..++++|.||++++|+.. +.. +...+.+|.+ .|.. ++ +..+.++. +.|.+|.+|.+.+..
T Consensus 24 ~~~~i~s~sRd~t~~vw~~~----~~~~l~~~~~~~~~g-------~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~ 92 (745)
T KOG0301|consen 24 DGVCIISGSRDGTVKVWAKK----GKQYLETHAFEGPKG-------FIANSICYAESDKGRLVVGGMDTTIIVFKLSQAE 92 (745)
T ss_pred CCeEEeecCCCCceeeeecc----CcccccceecccCcc-------eeeccceeccccCcceEeecccceEEEEecCCCC
Confidence 34479999999999999865 322 1234666666 5554 55 44566777 999999999987631
Q ss_pred CcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeE
Q 043350 187 EPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVL 266 (1133)
Q Consensus 187 ~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~ 266 (1133)
- -+++.+|.+.|+|++...++. ++|||+|.++++|.... ....+.+|...|+
T Consensus 93 P-----------------~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~----------l~~~l~gH~asVW 144 (745)
T KOG0301|consen 93 P-----------------LYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE----------LVYSLQGHTASVW 144 (745)
T ss_pred c-----------------hhhhhccccceeeeecCCcCc-eEecccccceEEecchh----------hhcccCCcchhee
Confidence 1 224556777899999888777 89999999999999873 4456999999999
Q ss_pred EEEEeeCCcEEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceE
Q 043350 267 AMIFSSQGDLWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARAR 346 (1133)
Q Consensus 267 sl~fsp~g~L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~ 346 (1133)
++++.|.+.++|||.|.+||+|.-
T Consensus 145 Av~~l~e~~~vTgsaDKtIklWk~-------------------------------------------------------- 168 (745)
T KOG0301|consen 145 AVASLPENTYVTGSADKTIKLWKG-------------------------------------------------------- 168 (745)
T ss_pred eeeecCCCcEEeccCcceeeeccC--------------------------------------------------------
Confidence 999999888999999999999953
Q ss_pred EEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccc--ccccceeeccCCce
Q 043350 347 VWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFL--QRSRNAIMGAADAV 424 (1133)
Q Consensus 347 vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~--~~~~~~~~~~~~~V 424 (1133)
++++++|.+|.+.|..+++-++.. |++++.||.|+.|+ +..+..+.+
T Consensus 169 ----------------~~~l~tf~gHtD~VRgL~vl~~~~----------flScsNDg~Ir~w~~~ge~l~~~~g----- 217 (745)
T KOG0301|consen 169 ----------------GTLLKTFSGHTDCVRGLAVLDDSH----------FLSCSNDGSIRLWDLDGEVLLEMHG----- 217 (745)
T ss_pred ----------------CchhhhhccchhheeeeEEecCCC----------eEeecCCceEEEEeccCceeeeeec-----
Confidence 456678889999999999988764 67999999998443 444444444
Q ss_pred EEEEEecCCcccCCCCCEEEEEECC-CCeEEEEecCCeEEEEeCCCCeeEEEecCCcceeE--EecCCCEEEEEecCCeE
Q 043350 425 RRVATRGAGAFVDDTKRTEAMVLTA-DGMIWSGCTNGLLVQWDGNGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYL 501 (1133)
Q Consensus 425 ~~v~~~p~g~~~~h~~~V~sl~~sp-dg~L~sgs~DG~I~vWd~~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I 501 (1133)
|+.-|.++.... ++.++++++|+++++|+.. .+.+.+......|++ +-++|+ |++|++||.|
T Consensus 218 -------------htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~V 282 (745)
T KOG0301|consen 218 -------------HTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRV 282 (745)
T ss_pred -------------cceEEEEEEecCCCCeEEEecCCceEEEeecC-ceEEEEecCccceEEEEEeeCCC-EEEeccCceE
Confidence 444555555334 4499999999999999987 788888877778888 444554 8889999999
Q ss_pred EEEeCC
Q 043350 502 QILDLD 507 (1133)
Q Consensus 502 ~vwd~~ 507 (1133)
+||..+
T Consensus 283 rVfT~~ 288 (745)
T KOG0301|consen 283 RVFTVD 288 (745)
T ss_pred EEEEec
Confidence 999976
No 79
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.86 E-value=3.1e-21 Score=195.56 Aligned_cols=284 Identities=17% Similarity=0.166 Sum_probs=222.7
Q ss_pred CceeeccCCCCeEEEEEeC---CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEE
Q 043350 204 APFYESANTSPTMCLMVDC---GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSG 279 (1133)
Q Consensus 204 ~~~~~~~h~s~V~~la~sp---d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sg 279 (1133)
.|.+-.+|..||..|+|+| +|-+|++++.||.-.+-+-+++ .-+-++.||.+.|++.....+.. -+|+
T Consensus 6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg--------dwigtfeghkgavw~~~l~~na~~aasa 77 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG--------DWIGTFEGHKGAVWSATLNKNATRAASA 77 (334)
T ss_pred CceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC--------CcEEeeeccCcceeeeecCchhhhhhhh
Confidence 3677789999999999997 8999999999998887776653 34779999999999999988777 8999
Q ss_pred eCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEee
Q 043350 280 GEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWD 359 (1133)
Q Consensus 280 s~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD 359 (1133)
+.|-+-++||.-++....++...... - ..+ .+.+...++.+ +.+..+++||
T Consensus 78 aadftakvw~a~tgdelhsf~hkhiv--k------~~a-------------f~~ds~~lltg--------g~ekllrvfd 128 (334)
T KOG0278|consen 78 AADFTAKVWDAVTGDELHSFEHKHIV--K------AVA-------------FSQDSNYLLTG--------GQEKLLRVFD 128 (334)
T ss_pred cccchhhhhhhhhhhhhhhhhhhhee--e------eEE-------------ecccchhhhcc--------chHHHhhhhh
Confidence 99999999998664222222111110 0 011 22344445555 7888999999
Q ss_pred cCC-CceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCC
Q 043350 360 ARS-KELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDD 438 (1133)
Q Consensus 360 ~~t-g~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h 438 (1133)
+.. ..+.+.+.+|...|..+-|...... |++++.|++|+.|+-+.... |.++.+.
T Consensus 129 ln~p~App~E~~ghtg~Ir~v~wc~eD~~---------iLSSadd~tVRLWD~rTgt~-------v~sL~~~-------- 184 (334)
T KOG0278|consen 129 LNRPKAPPKEISGHTGGIRTVLWCHEDKC---------ILSSADDKTVRLWDHRTGTE-------VQSLEFN-------- 184 (334)
T ss_pred ccCCCCCchhhcCCCCcceeEEEeccCce---------EEeeccCCceEEEEeccCcE-------EEEEecC--------
Confidence 984 4467889999999999999988888 88999999999888664332 4444443
Q ss_pred CCCEEEEEECCCCeEEEEecCCeEEEEeCCC-CeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCC-CCcceee
Q 043350 439 TKRTEAMVLTADGMIWSGCTNGLLVQWDGNG-NRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLD-GNLTASW 514 (1133)
Q Consensus 439 ~~~V~sl~~spdg~L~sgs~DG~I~vWd~~g-~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~ 514 (1133)
..|.++.++++|.+++-...+.|++||... ..++.++. ...|.+ ++|+...+++|+.|+.++.||.. |+.+..+
T Consensus 185 -s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~ 262 (334)
T KOG0278|consen 185 -SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY 262 (334)
T ss_pred -CCCcceeeccCCCEEEEecCceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceeeec
Confidence 568888899999777777888999999954 67776655 445655 99999999999999999999987 5666665
Q ss_pred -eccccCeEEeeec--ccceeeecccCCeeeccccCCCC
Q 043350 515 -IAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTSPSP 550 (1133)
Q Consensus 515 -~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s~~~ 550 (1133)
++|.++|.+|.|+ |...+++|.||+||+|.......
T Consensus 263 nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 263 NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 8999999999999 88999999999999999766443
No 80
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.86 E-value=1e-18 Score=192.53 Aligned_cols=398 Identities=13% Similarity=0.146 Sum_probs=254.6
Q ss_pred CCCCCCCCCcccccCCCCCEEEEecCCC--------eEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-e--CC
Q 043350 98 GPDAADDQQQHKPFQPMVEFIGSGGGTG--------IFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-C--TD 166 (1133)
Q Consensus 98 ~~~~~~~~~~~~~~~p~g~~lasgs~dg--------~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s--~d 166 (1133)
||...+-. ...+|+-..+|+|-..| .+|+||..+. ..+..+-.... .|.+++ + ..
T Consensus 102 GH~ddikc---~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L----~TL~V~g~f~~-------GV~~vaFsk~~~ 167 (626)
T KOG2106|consen 102 GHNDDIKC---MAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTL----STLHVIGFFDR-------GVTCVAFSKING 167 (626)
T ss_pred CCCCceEE---EeecCCceeeccCcccccCCCcCCCeeeecccccc----eeeeeeccccc-------cceeeeecccCC
Confidence 55444333 56688888888875555 4899996531 11333332223 688888 3 35
Q ss_pred CCeEE----ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeC
Q 043350 167 TQLWA----GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKM 241 (1133)
Q Consensus 167 g~lla----s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~ 241 (1133)
|.+++ +.+..+.|||++...+... .......|....|+| +.++++++++ |.+..|+.
T Consensus 168 G~~l~~vD~s~~h~lSVWdWqk~~~~~~-----------------vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~ 229 (626)
T KOG2106|consen 168 GSLLCAVDDSNPHMLSVWDWQKKAKLGP-----------------VKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTL 229 (626)
T ss_pred CceEEEecCCCccccchhhchhhhccCc-----------------ceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEc
Confidence 66666 7788899999987433210 111233678889999 6677777776 89999998
Q ss_pred CCCCCCCCCCcccccccccC-CCCeEEEEEeeCCcEEEEeCCCcEEEEeCCCC--ceeeEeCCCCce---------EEEE
Q 043350 242 DQTLDDANNPFKEGLSWQAH-RGPVLAMIFSSQGDLWSGGEGGVIKIWPWESI--EKSLSLKPEEKH---------MAAL 309 (1133)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~gH-~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~~~--~~~l~~~~~~~~---------l~s~ 309 (1133)
+++ ..++....+.++ +..|.||+|.++|+++||..+|.|.||+..+. .+....|+.+.. ++++
T Consensus 230 ~~~-----~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSG 304 (626)
T KOG2106|consen 230 RGG-----SLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSG 304 (626)
T ss_pred cCC-----ceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeec
Confidence 872 223444455555 56899999999999999999999999999773 233334444433 3345
Q ss_pred eecce--EEEccCceeeeccccCC--CCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCC
Q 043350 310 LVERS--FIDLRAQVTVNGACSIS--STEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQ 385 (1133)
Q Consensus 310 ~~d~s--~~d~~~~~~v~~~~~~~--~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g 385 (1133)
..||. .||-. -..... ...| .+....++-+.+.+.+-. ..+.|.-=.+ .+..-.+..+|......++.+|..
T Consensus 305 gKDRki~~Wd~~-y~k~r~-~elPe~~G~iRtv~e~~~di~vGT-trN~iL~Gt~-~~~f~~~v~gh~delwgla~hps~ 380 (626)
T KOG2106|consen 305 GKDRKIILWDDN-YRKLRE-TELPEQFGPIRTVAEGKGDILVGT-TRNFILQGTL-ENGFTLTVQGHGDELWGLATHPSK 380 (626)
T ss_pred CccceEEecccc-cccccc-ccCchhcCCeeEEecCCCcEEEee-ccceEEEeee-cCCceEEEEecccceeeEEcCCCh
Confidence 55555 33311 001110 0111 111222222211111111 1111111111 223334556788889999999999
Q ss_pred CccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCc----------------------ccCCCCCEE
Q 043350 386 DQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGA----------------------FVDDTKRTE 443 (1133)
Q Consensus 386 ~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~----------------------~~~h~~~V~ 443 (1133)
.+ +++++.|+.++.|......--..-.+++.++.|+|.|. ....+.++.
T Consensus 381 ~q---------~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls 451 (626)
T KOG2106|consen 381 NQ---------LLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLS 451 (626)
T ss_pred hh---------eeeccCcceEEEccCCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceE
Confidence 99 99999999999777443332333456777888888765 223377899
Q ss_pred EEEECCCC-eEEEEecCCeEEEEeC--CCCeeEEEec-CCcceeE--EecCCCEEEEEecCCeEEEEe------------
Q 043350 444 AMVLTADG-MIWSGCTNGLLVQWDG--NGNRVSDILH-HQCAVQC--FCTYGSRMYVGYVSGYLQILD------------ 505 (1133)
Q Consensus 444 sl~~spdg-~L~sgs~DG~I~vWd~--~g~~l~~~~~-h~~~V~~--fs~dg~~Lasgs~DG~I~vwd------------ 505 (1133)
++.|+|+| +|+.|+.|+.|++|.. +|..+..... +.++|+. ||+|+++|.+-+.|-.|..|.
T Consensus 452 ~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kD 531 (626)
T KOG2106|consen 452 VVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKD 531 (626)
T ss_pred EEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecc
Confidence 99999999 9999999999999987 5555444433 4467776 888888888777777777774
Q ss_pred ------------------------------------------------CC----CCcceeeeccccCeEEeeec--ccce
Q 043350 506 ------------------------------------------------LD----GNLTASWIAHSSPVLKLAVG--VDHI 531 (1133)
Q Consensus 506 ------------------------------------------------~~----g~~l~~~~~H~~~V~~l~fs--~~~L 531 (1133)
.- ..+..++.+|+..|++++|. .+.+
T Consensus 532 vkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~l 611 (626)
T KOG2106|consen 532 VKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHL 611 (626)
T ss_pred eeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceE
Confidence 10 01234556788888888888 6777
Q ss_pred eeecccCCeeeccc
Q 043350 532 YSLAAHGGIRGWTF 545 (1133)
Q Consensus 532 ~S~s~Dg~I~lW~l 545 (1133)
++.+.|..|..|++
T Consensus 612 i~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 612 ISTGKDTSIMQWRL 625 (626)
T ss_pred EecCCCceEEEEEe
Confidence 77788888888875
No 81
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.3e-20 Score=221.03 Aligned_cols=245 Identities=19% Similarity=0.245 Sum_probs=183.9
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC------C---------------------C--------------C
Q 043350 210 ANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTL------D---------------------D--------------A 248 (1133)
Q Consensus 210 ~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~------~---------------------~--------------~ 248 (1133)
.|.+.|+|+.|++||++||+||.||.|+||.+...+ . . .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 689999999999999999999999999999875400 0 0 0
Q ss_pred C-C----------CcccccccccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEE
Q 043350 249 N-N----------PFKEGLSWQAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFID 317 (1133)
Q Consensus 249 ~-~----------~~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d 317 (1133)
. . .-+++..+.||.+.|..|.|+.++-|+|+|.|.|||+|++.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~-------------------------- 398 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPG-------------------------- 398 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCC--------------------------
Confidence 0 0 01245578899999999999987769999999999999873
Q ss_pred ccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCC-CCCccccccceEE
Q 043350 318 LRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQS-VQDQPVEDEMKVK 396 (1133)
Q Consensus 318 ~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp-~g~~~~e~e~~v~ 396 (1133)
..++|++|. |.+-|+|++|+| |.++
T Consensus 399 --------------------------------------------~~~CL~~F~-HndfVTcVaFnPvDDry--------- 424 (712)
T KOG0283|consen 399 --------------------------------------------RKECLKVFS-HNDFVTCVAFNPVDDRY--------- 424 (712)
T ss_pred --------------------------------------------CcceeeEEe-cCCeeEEEEecccCCCc---------
Confidence 245556664 788999999999 6778
Q ss_pred EEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCCCCee-EE
Q 043350 397 FVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGNGNRV-SD 474 (1133)
Q Consensus 397 lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g~~l-~~ 474 (1133)
|++||.|++++.|.-...++ .. ..+-..-|++++|.||| ..+.|+-+|.+++|+..+..+ ..
T Consensus 425 FiSGSLD~KvRiWsI~d~~V-----------v~-----W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 425 FISGSLDGKVRLWSISDKKV-----------VD-----WNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred EeecccccceEEeecCcCee-----------Ee-----ehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence 99999999998665332221 11 12334678999999999 999999999999999977443 33
Q ss_pred Eec--C------CcceeE--Ee-cCCCEEEEEecCCeEEEEeCCC-CcceeeeccccC--eEEeeec--ccceeeecccC
Q 043350 475 ILH--H------QCAVQC--FC-TYGSRMYVGYVSGYLQILDLDG-NLTASWIAHSSP--VLKLAVG--VDHIYSLAAHG 538 (1133)
Q Consensus 475 ~~~--h------~~~V~~--fs-~dg~~Lasgs~DG~I~vwd~~g-~~l~~~~~H~~~--V~~l~fs--~~~L~S~s~Dg 538 (1133)
+.. | ...|+. |. .+.+.|++.+.|..|+|||... +++..|+|+... -..-.|+ |++|++++.|.
T Consensus 489 ~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs 568 (712)
T KOG0283|consen 489 FHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS 568 (712)
T ss_pred eeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCc
Confidence 221 1 226887 33 3445788889999999999964 678888875432 2233344 99999999999
Q ss_pred CeeeccccCCCC
Q 043350 539 GIRGWTFTSPSP 550 (1133)
Q Consensus 539 ~I~lW~l~s~~~ 550 (1133)
.|.+|+...+..
T Consensus 569 ~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 569 WVYIWKNDSFNS 580 (712)
T ss_pred eEEEEeCCCCcc
Confidence 999999877544
No 82
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.86 E-value=3.9e-21 Score=207.52 Aligned_cols=276 Identities=17% Similarity=0.186 Sum_probs=210.6
Q ss_pred ceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCC
Q 043350 205 PFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGG 283 (1133)
Q Consensus 205 ~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~Dg 283 (1133)
.++...|.+.|..+.|-++...|++|+.|..|++|++.++.. ....++.|-.++|+++.|.+++. +++++.|+
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~------~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~ 241 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS------ELISTLAGSLGNITSIDFDSDNKHVIAASNDK 241 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchh------hhhhhhhccCCCcceeeecCCCceEEeecCCC
Confidence 456677899999999999999999999999999999987333 56778899999999999999999 99999999
Q ss_pred cEEEEeCCC--CceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecC
Q 043350 284 VIKIWPWES--IEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDAR 361 (1133)
Q Consensus 284 tI~iWdl~~--~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~ 361 (1133)
.+++|+++. ....+..|.+... ...+. ... ..++++ +.|.+|++||+.
T Consensus 242 ~~r~Wnvd~~r~~~TLsGHtdkVt---------~ak~~------------~~~-~~vVsg--------s~DRtiK~WDl~ 291 (459)
T KOG0288|consen 242 NLRLWNVDSLRLRHTLSGHTDKVT---------AAKFK------------LSH-SRVVSG--------SADRTIKLWDLQ 291 (459)
T ss_pred ceeeeeccchhhhhhhccccccee---------eehhh------------ccc-cceeec--------cccchhhhhhhh
Confidence 999999987 3455666666554 22221 111 115666 889999999999
Q ss_pred CCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCC
Q 043350 362 SKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKR 441 (1133)
Q Consensus 362 tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~ 441 (1133)
.+.+.+++-.. ..+..+..+ ... +++|-.|++|+.|+.+.-.. +..+. -.+.
T Consensus 292 k~~C~kt~l~~-S~cnDI~~~--~~~---------~~SgH~DkkvRfwD~Rs~~~-------~~sv~---------~gg~ 343 (459)
T KOG0288|consen 292 KAYCSKTVLPG-SQCNDIVCS--ISD---------VISGHFDKKVRFWDIRSADK-------TRSVP---------LGGR 343 (459)
T ss_pred hhheecccccc-ccccceEec--cee---------eeecccccceEEEeccCCce-------eeEee---------cCcc
Confidence 99888876443 234445544 333 78999999998777553221 22222 2347
Q ss_pred EEEEEECCCC-eEEEEecCCeEEEEeCCCC-eeEEEec------CCcceeEEecCCCEEEEEecCCeEEEEeCC-CCcce
Q 043350 442 TEAMVLTADG-MIWSGCTNGLLVQWDGNGN-RVSDILH------HQCAVQCFCTYGSRMYVGYVSGYLQILDLD-GNLTA 512 (1133)
Q Consensus 442 V~sl~~spdg-~L~sgs~DG~I~vWd~~g~-~l~~~~~------h~~~V~~fs~dg~~Lasgs~DG~I~vwd~~-g~~l~ 512 (1133)
|+++..+++| .|.+.+.|.++.+.|+.+. ..+.+.. |...-.+|||++.|+++||.||.|+||++. |++..
T Consensus 344 vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~ 423 (459)
T KOG0288|consen 344 VTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEK 423 (459)
T ss_pred eeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEE
Confidence 8899999999 8888899999999999764 4444433 332222399999999999999999999997 46666
Q ss_pred eeecccc--CeEEeeec--ccceeeecccCCeeecc
Q 043350 513 SWIAHSS--PVLKLAVG--VDHIYSLAAHGGIRGWT 544 (1133)
Q Consensus 513 ~~~~H~~--~V~~l~fs--~~~L~S~s~Dg~I~lW~ 544 (1133)
.+..... .|++++|+ |.+|++++.++.+++|.
T Consensus 424 ~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 424 VLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 6655333 69999999 99999999999999994
No 83
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.86 E-value=3.3e-20 Score=204.67 Aligned_cols=299 Identities=11% Similarity=0.127 Sum_probs=212.4
Q ss_pred eeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEE
Q 043350 142 CLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCL 218 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~l 218 (1133)
...|..|.. .|.+++ -+.|..|+ |.|-+|++||++++-..+.... .+.-....+|.++
T Consensus 160 Ei~l~hgtk-------~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr------------~l~P~E~h~i~sl 220 (641)
T KOG0772|consen 160 EIQLKHGTK-------IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFR------------QLQPCETHQINSL 220 (641)
T ss_pred eEeccCCce-------EEEEeeecCCCceeeeccccceEEEEecccccccchhhh------------ccCccccccccee
Confidence 445667766 899999 78887777 8899999999998544432111 1122334589999
Q ss_pred EEeCCCCEEEEEeCCCeEEEEeCCCCCCCC----CCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCC
Q 043350 219 MVDCGNRLVWTGHKDGKIRSWKMDQTLDDA----NNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWES 292 (1133)
Q Consensus 219 a~spd~~~LaSgs~Dg~V~vWd~~~~~~~~----~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~ 292 (1133)
.|++.+..|++.+.....+|+|-++..... ..-+.-+..-+||...++|.+|+|..+ ++|||.||++|||+++.
T Consensus 221 ~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~ 300 (641)
T KOG0772|consen 221 QYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNN 300 (641)
T ss_pred eecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCC
Confidence 999999998888888899999987633100 111122335579999999999999977 99999999999999974
Q ss_pred CceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecC
Q 043350 293 IEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIE 372 (1133)
Q Consensus 293 ~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h 372 (1133)
....+ . ++... . -.+.
T Consensus 301 ~k~q~-------q---------Vik~k------------------------------------------~------~~g~ 316 (641)
T KOG0772|consen 301 TKSQL-------Q---------VIKTK------------------------------------------P------AGGK 316 (641)
T ss_pred chhhe-------e---------EEeec------------------------------------------c------CCCc
Confidence 21100 0 00000 0 0012
Q ss_pred CcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCC--CEEEEEECCC
Q 043350 373 GHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTK--RTEAMVLTAD 450 (1133)
Q Consensus 373 ~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~--~V~sl~~spd 450 (1133)
.-.++.++|++++.. ||+|..||.|+.|+.+.+.. .++..+. ..|.. .|++|.||+|
T Consensus 317 Rv~~tsC~~nrdg~~---------iAagc~DGSIQ~W~~~~~~v-----~p~~~vk-------~AH~~g~~Itsi~FS~d 375 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKL---------IAAGCLDGSIQIWDKGSRTV-----RPVMKVK-------DAHLPGQDITSISFSYD 375 (641)
T ss_pred ccCceeeecCCCcch---------hhhcccCCceeeeecCCccc-----ccceEee-------eccCCCCceeEEEeccc
Confidence 234678999999999 99999999999877543322 1111221 34554 7999999999
Q ss_pred C-eEEEEecCCeEEEEeCCC--CeeEEEecC----CcceeEEecCCCEEEEEe------cCCeEEEEeCCC-Ccceeeec
Q 043350 451 G-MIWSGCTNGLLVQWDGNG--NRVSDILHH----QCAVQCFCTYGSRMYVGY------VSGYLQILDLDG-NLTASWIA 516 (1133)
Q Consensus 451 g-~L~sgs~DG~I~vWd~~g--~~l~~~~~h----~~~V~~fs~dg~~Lasgs------~DG~I~vwd~~g-~~l~~~~~ 516 (1133)
| +|++-+.|+++++||+.. +++....+- ...=.||||+.++|++|. ..|++++||... ..+..+--
T Consensus 376 g~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i 455 (641)
T KOG0772|consen 376 GNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI 455 (641)
T ss_pred cchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC
Confidence 9 999999999999999943 666655441 122234999999999997 467899999764 44555555
Q ss_pred cccCeEEeeec--ccceeeecccCCeeecc
Q 043350 517 HSSPVLKLAVG--VDHIYSLAAHGGIRGWT 544 (1133)
Q Consensus 517 H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~ 544 (1133)
-...|..+.|+ =+.|+.++.||+++++-
T Consensus 456 ~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 456 STASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CCceEEEEeecchhhheeeecCCCceEEEE
Confidence 57889999999 45677777889998764
No 84
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.3e-19 Score=189.44 Aligned_cols=285 Identities=12% Similarity=0.107 Sum_probs=198.7
Q ss_pred eeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCccccccccc--CCCCeEEEEEeeCCc--EEEEeCC
Q 043350 207 YESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQA--HRGPVLAMIFSSQGD--LWSGGEG 282 (1133)
Q Consensus 207 ~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~g--H~~~V~sl~fsp~g~--L~Sgs~D 282 (1133)
++.+|...|+|++|+.||+.|||++.|++|+||+++.-.. ++-..+.. .-+.-+.++|.||-. ++++-..
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~------~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN------KEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh------hhhhHhhccccCCCceEEEECCCcceEEEEEccC
Confidence 4567888999999999999999999999999999975221 11111111 112457889999988 7777788
Q ss_pred CcEEEEeCCCC---ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEee
Q 043350 283 GVIKIWPWESI---EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWD 359 (1133)
Q Consensus 283 gtI~iWdl~~~---~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD 359 (1133)
.++++|.+... ...+.+.+.... - +...-.+..+.-...+...++.++ +.|..|.|||
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~---------~--f~~kh~v~~i~iGiA~~~k~imsa--------s~dt~i~lw~ 215 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNL---------E--FERKHQVDIINIGIAGNAKYIMSA--------SLDTKICLWD 215 (420)
T ss_pred CEEEEEEeeecccCCCCccccccccc---------c--cchhcccceEEEeecCCceEEEEe--------cCCCcEEEEe
Confidence 89999987642 111111111000 0 000000000000023455566666 8899999999
Q ss_pred cCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCc-----
Q 043350 360 ARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGA----- 434 (1133)
Q Consensus 360 ~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~----- 434 (1133)
++ |+.+..+......-+..+.||+|++ +++++..--+ .||.+.|..+|.
T Consensus 216 lk-Gq~L~~idtnq~~n~~aavSP~GRF---------ia~~gFTpDV----------------kVwE~~f~kdG~fqev~ 269 (420)
T KOG2096|consen 216 LK-GQLLQSIDTNQSSNYDAAVSPDGRF---------IAVSGFTPDV----------------KVWEPIFTKDGTFQEVK 269 (420)
T ss_pred cC-CceeeeeccccccccceeeCCCCcE---------EEEecCCCCc----------------eEEEEEeccCcchhhhh
Confidence 98 9999999877777778899999999 8888765555 345555555554
Q ss_pred ----ccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCCC--------CeeEEEec-----CCcceeE-EecCCCEEEEE
Q 043350 435 ----FVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGNG--------NRVSDILH-----HQCAVQC-FCTYGSRMYVG 495 (1133)
Q Consensus 435 ----~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g--------~~l~~~~~-----h~~~V~~-fs~dg~~Lasg 495 (1133)
+.+|...|.+++|+++. .+++.+.||++++||.+- +.+++... ...++.- +||.|+.||++
T Consensus 270 rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s 349 (420)
T KOG2096|consen 270 RVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS 349 (420)
T ss_pred hhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEee
Confidence 78999999999999999 999999999999999742 23333311 2233333 99999998877
Q ss_pred ecCCeEEEEeCC-CCcceee-eccccCeEEeeec--ccceeeecccCCeeecc
Q 043350 496 YVSGYLQILDLD-GNLTASW-IAHSSPVLKLAVG--VDHIYSLAAHGGIRGWT 544 (1133)
Q Consensus 496 s~DG~I~vwd~~-g~~l~~~-~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~ 544 (1133)
.. ..+++|..+ |+.+-++ ..|.+.|.+++|+ |++++||| |..+++..
T Consensus 350 ~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 350 FG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred cC-CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 64 479999876 5555555 4699999999999 99999998 56677665
No 85
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=6.8e-21 Score=215.58 Aligned_cols=241 Identities=20% Similarity=0.306 Sum_probs=195.8
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCC
Q 043350 223 GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKP 301 (1133)
Q Consensus 223 d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~ 301 (1133)
.+++|+|||+||.|++|++......... .....++.|.+.|+.++...+|+ |+|||.|-+|++|+.....
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~--~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~------- 106 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPST--PYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN------- 106 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCccc--chhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-------
Confidence 6778999999999999999763331111 24678899999999999999998 9999999999999874210
Q ss_pred CCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEe
Q 043350 302 EEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDT 381 (1133)
Q Consensus 302 ~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~ 381 (1133)
.-++.++..|.+.|.++++
T Consensus 107 -------------------------------------------------------------~~c~stir~H~DYVkcla~ 125 (735)
T KOG0308|consen 107 -------------------------------------------------------------TFCMSTIRTHKDYVKCLAY 125 (735)
T ss_pred -------------------------------------------------------------chhHhhhhcccchheeeee
Confidence 0123456678899999999
Q ss_pred -CCCCCccccccceEEEEeeCCCCccccccccccce-eeccCCceEEEEEecCCcc-cCCCCCEEEEEECCCC-eEEEEe
Q 043350 382 -QSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNA-IMGAADAVRRVATRGAGAF-VDDTKRTEAMVLTADG-MIWSGC 457 (1133)
Q Consensus 382 -sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~-~~~~~~~V~~v~~~p~g~~-~~h~~~V~sl~~spdg-~L~sgs 457 (1133)
.++... +|+|+.|+.|..|+-..... +....+.+ +...+ .++...|++++..+.| .|++|+
T Consensus 126 ~ak~~~l---------vaSgGLD~~IflWDin~~~~~l~~s~n~~------t~~sl~sG~k~siYSLA~N~t~t~ivsGg 190 (735)
T KOG0308|consen 126 IAKNNEL---------VASGGLDRKIFLWDINTGTATLVASFNNV------TVNSLGSGPKDSIYSLAMNQTGTIIVSGG 190 (735)
T ss_pred cccCcee---------EEecCCCccEEEEEccCcchhhhhhcccc------ccccCCCCCccceeeeecCCcceEEEecC
Confidence 777777 99999999998666543211 11111111 11112 3788899999999999 999999
Q ss_pred cCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCC-CcceeeeccccCeEEeeec--ccce
Q 043350 458 TNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG-NLTASWIAHSSPVLKLAVG--VDHI 531 (1133)
Q Consensus 458 ~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g-~~l~~~~~H~~~V~~l~fs--~~~L 531 (1133)
..+.|++||. .++.+..+.+|...|.+ ++.||..+++||.||+|++||+.. ..+.++..|.+.|+++..+ -..+
T Consensus 191 tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~v 270 (735)
T KOG0308|consen 191 TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHV 270 (735)
T ss_pred cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceE
Confidence 9999999999 66889999999999999 899999999999999999999974 6899999999999999998 7789
Q ss_pred eeecccCCeeeccccCC
Q 043350 532 YSLAAHGGIRGWTFTSP 548 (1133)
Q Consensus 532 ~S~s~Dg~I~lW~l~s~ 548 (1133)
++|+.||.|..=|+..+
T Consensus 271 YsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 271 YSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EecCCCCcEEecccCCc
Confidence 99999999999998775
No 86
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=5.6e-19 Score=176.37 Aligned_cols=296 Identities=14% Similarity=0.155 Sum_probs=214.8
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-------CCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCC
Q 043350 211 NTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLD-------DANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEG 282 (1133)
Q Consensus 211 h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~-------~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~D 282 (1133)
....|.+++|+|.|.+-+.|+..++++|-....-.. .-.++......-+.|++.|+|.+|+|.|+ |+|||.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 355799999999999999999999999875432110 01122223344567899999999999999 9999999
Q ss_pred CcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeecccc--CCCCCeEEEEecCCceEEEecCCCceeEeec
Q 043350 283 GVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACS--ISSTEIKCMLSDHARARVWCAQPLSFSLWDA 360 (1133)
Q Consensus 283 gtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~--~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~ 360 (1133)
.+|++..++........+.-+-. ..|+ .+..+++ .+.....+++++. .+|..|.+-|-
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~n----mhdg---------tirdl~fld~~~s~~~il~s~g-------agdc~iy~tdc 170 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFN----MHDG---------TIRDLAFLDDPESGGAILASAG-------AGDCKIYITDC 170 (350)
T ss_pred ceEEEEecccccccccCcceeee----ecCC---------ceeeeEEecCCCcCceEEEecC-------CCcceEEEeec
Confidence 99999877652111111111100 0111 1222222 1334444555440 56778888888
Q ss_pred CCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEE--EEecCCcccCC
Q 043350 361 RSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRV--ATRGAGAFVDD 438 (1133)
Q Consensus 361 ~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v--~~~p~g~~~~h 438 (1133)
.+|+.++.+.+|.+-|.++ ++-++-+ +++|+.|.+|+.|+.+.... |..+ .++. + .-.
T Consensus 171 ~~g~~~~a~sghtghilal-yswn~~m---------~~sgsqdktirfwdlrv~~~-------v~~l~~~~~~-~--gle 230 (350)
T KOG0641|consen 171 GRGQGFHALSGHTGHILAL-YSWNGAM---------FASGSQDKTIRFWDLRVNSC-------VNTLDNDFHD-G--GLE 230 (350)
T ss_pred CCCCcceeecCCcccEEEE-EEecCcE---------EEccCCCceEEEEeeeccce-------eeeccCcccC-C--Ccc
Confidence 9999999999999988665 3445667 99999999999777663221 1111 1110 0 012
Q ss_pred CCCEEEEEECCCC-eEEEEecCCeEEEEeCCC-CeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCCCc----
Q 043350 439 TKRTEAMVLTADG-MIWSGCTNGLLVQWDGNG-NRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGNL---- 510 (1133)
Q Consensus 439 ~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g-~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~~---- 510 (1133)
...|.+++..|.| .|++|..|....+||+.| ..++.+..|+..|.| |+|...||.+++.|..|++-|+.|.+
T Consensus 231 ssavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el 310 (350)
T KOG0641|consen 231 SSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHEL 310 (350)
T ss_pred cceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcC
Confidence 3568999999999 999999999999999965 789999999999999 99999999999999999999999854
Q ss_pred -ceeeeccccCeEEeeec--ccceeeecccCCeeecccc
Q 043350 511 -TASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFT 546 (1133)
Q Consensus 511 -l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~ 546 (1133)
+.....|.+.+..+.|+ .-.++|.|.|.++.+|-+.
T Consensus 311 ~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 311 PIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 33445699999999999 5568899999999999753
No 87
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=3e-20 Score=189.25 Aligned_cols=258 Identities=13% Similarity=0.169 Sum_probs=191.2
Q ss_pred CCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eC--CCCeEE-ecCCcEEEeeCCCCCCcCcCCCccccC
Q 043350 123 GTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CT--DTQLWA-GQECGVRFWNLEDSYEPGAGIGGRVRR 198 (1133)
Q Consensus 123 ~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~--dg~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~ 198 (1133)
+.|.+.|-+.+ +..-+.++..-.- .-.+..|+ ++ +.++++ +.||++++||+......
T Consensus 36 G~G~L~ile~~----~~~gi~e~~s~d~-----~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~P---------- 96 (311)
T KOG0277|consen 36 GNGRLFILEVT----DPKGIQECQSYDT-----EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKP---------- 96 (311)
T ss_pred cCceEEEEecC----CCCCeEEEEeeec-----ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcc----------
Confidence 34666676664 2221333332221 11688888 44 567777 99999999996543222
Q ss_pred CCCCCCceeeccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--
Q 043350 199 GDEDAAPFYESANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-- 275 (1133)
Q Consensus 199 g~~~~~~~~~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-- 275 (1133)
...+.-|...|.++.|++ .++.++++|.|++|++|+.... +.+.++.||...|...+|+|.-.
T Consensus 97 ------i~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~--------~Sv~Tf~gh~~~Iy~a~~sp~~~nl 162 (311)
T KOG0277|consen 97 ------IHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP--------NSVQTFNGHNSCIYQAAFSPHIPNL 162 (311)
T ss_pred ------hhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC--------cceEeecCCccEEEEEecCCCCCCe
Confidence 123556888999999999 6778889999999999998751 45778999999999999999855
Q ss_pred EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCce
Q 043350 276 LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSF 355 (1133)
Q Consensus 276 L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I 355 (1133)
++++|.|+++++||++.
T Consensus 163 fas~Sgd~~l~lwdvr~--------------------------------------------------------------- 179 (311)
T KOG0277|consen 163 FASASGDGTLRLWDVRS--------------------------------------------------------------- 179 (311)
T ss_pred EEEccCCceEEEEEecC---------------------------------------------------------------
Confidence 99999999999999853
Q ss_pred eEeecCCCceeEEEecCCcceeEEEeCCCC-CccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCc
Q 043350 356 SLWDARSKELLKVFNIEGHIENRVDTQSVQ-DQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGA 434 (1133)
Q Consensus 356 ~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g-~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~ 434 (1133)
.|+.+. +..|...+.++.|+.-. .. +++|+.|+.|+.|+.+..++ ++ -.
T Consensus 180 ------~gk~~~-i~ah~~Eil~cdw~ky~~~v---------l~Tg~vd~~vr~wDir~~r~------pl--------~e 229 (311)
T KOG0277|consen 180 ------PGKFMS-IEAHNSEILCCDWSKYNHNV---------LATGGVDNLVRGWDIRNLRT------PL--------FE 229 (311)
T ss_pred ------CCceeE-EEeccceeEeecccccCCcE---------EEecCCCceEEEEehhhccc------cc--------ee
Confidence 122222 56677778888888744 45 99999999999888775553 11 11
Q ss_pred ccCCCCCEEEEEECCCC--eEEEEecCCeEEEEeCC-C-CeeEEEecCCcceeE--Eec-CCCEEEEEecCCeEEEEeC
Q 043350 435 FVDDTKRTEAMVLTADG--MIWSGCTNGLLVQWDGN-G-NRVSDILHHQCAVQC--FCT-YGSRMYVGYVSGYLQILDL 506 (1133)
Q Consensus 435 ~~~h~~~V~sl~~spdg--~L~sgs~DG~I~vWd~~-g-~~l~~~~~h~~~V~~--fs~-dg~~Lasgs~DG~I~vwd~ 506 (1133)
+.+|.-.|..+++||.. .|++++-|-++++||.. + .++.+...|+..|.. |++ ++.++|+.+.|+.++||+.
T Consensus 230 L~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 230 LNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 34666677777777877 89999999999999994 3 566677778877776 655 5679999999999999984
No 88
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=1.4e-20 Score=200.07 Aligned_cols=278 Identities=18% Similarity=0.191 Sum_probs=205.8
Q ss_pred CCCeeeeccCCCccccccceEEEEE-eCCC-CeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCC
Q 043350 139 RPPCLELRPHPLKETQAGRFLRNIA-CTDT-QLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSP 214 (1133)
Q Consensus 139 ~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg-~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~ 214 (1133)
+|.+..|.+|.. .|.+++ .|+. ..++ +.||.|++||+....+. ..+..|.+.
T Consensus 56 kPFv~~L~gHrd-------GV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~-----------------~~f~AH~G~ 111 (433)
T KOG0268|consen 56 KPFVGSLDGHRD-------GVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI-----------------RTFKAHEGL 111 (433)
T ss_pred ccchhhcccccc-------ccchhhcCcchhhhhhccccCceEEEEehhhhhhh-----------------heeecccCc
Confidence 444677899999 999999 7765 4555 88999999999874332 245678889
Q ss_pred eEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCC-
Q 043350 215 TMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWES- 292 (1133)
Q Consensus 215 V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~- 292 (1133)
|..|+++. ..+++++.|.+|+.|.+++ .+..++.+ ...+..|.-+..+. ++|||++ |-|||..-
T Consensus 112 V~Gi~v~~--~~~~tvgdDKtvK~wk~~~---------~p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~ 177 (433)
T KOG0268|consen 112 VRGICVTQ--TSFFTVGDDKTVKQWKIDG---------PPLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRD 177 (433)
T ss_pred eeeEEecc--cceEEecCCcceeeeeccC---------Ccceeeec-cccccccccccccccccccCce--eeecccccC
Confidence 99999976 6789999999999999987 34444443 35567777766666 8998874 88999865
Q ss_pred -CceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEec
Q 043350 293 -IEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNI 371 (1133)
Q Consensus 293 -~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~ 371 (1133)
.+..+.+..+... .+.+ ...+..+++++ +.|++|.|||++++.+++.+..
T Consensus 178 ~Pv~smswG~Dti~---------svkf------------NpvETsILas~--------~sDrsIvLyD~R~~~Pl~KVi~ 228 (433)
T KOG0268|consen 178 NPVSSMSWGADSIS---------SVKF------------NPVETSILASC--------ASDRSIVLYDLRQASPLKKVIL 228 (433)
T ss_pred CccceeecCCCcee---------EEec------------CCCcchheeee--------ccCCceEEEecccCCccceeee
Confidence 4555555555444 2222 33455677777 8999999999999999886543
Q ss_pred CCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC
Q 043350 372 EGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG 451 (1133)
Q Consensus 372 h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg 451 (1133)
...-+.++|+|+.-. +++|+.|..++.++.+.+.. |.+...+|...|..+.|||.|
T Consensus 229 -~mRTN~IswnPeafn---------F~~a~ED~nlY~~DmR~l~~--------------p~~v~~dhvsAV~dVdfsptG 284 (433)
T KOG0268|consen 229 -TMRTNTICWNPEAFN---------FVAANEDHNLYTYDMRNLSR--------------PLNVHKDHVSAVMDVDFSPTG 284 (433)
T ss_pred -eccccceecCccccc---------eeeccccccceehhhhhhcc--------------cchhhcccceeEEEeccCCCc
Confidence 223467899997777 99999999998666553322 112245666677777788888
Q ss_pred -eEEEEecCCeEEEEeCCCCeeEEEec--CCcceeE--EecCCCEEEEEecCCeEEEEeCC
Q 043350 452 -MIWSGCTNGLLVQWDGNGNRVSDILH--HQCAVQC--FCTYGSRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 452 -~L~sgs~DG~I~vWd~~g~~l~~~~~--h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~ 507 (1133)
-+++|+-|.+|+||..+...-+.+.. -...|.| ||.|.+|+++||.|+.|++|...
T Consensus 285 ~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 285 QEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred chhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 89999999999999985433333221 2345777 99999999999999999999854
No 89
>PTZ00421 coronin; Provisional
Probab=99.84 E-value=5.5e-19 Score=210.52 Aligned_cols=283 Identities=16% Similarity=0.149 Sum_probs=189.0
Q ss_pred eCC-CCeEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEe
Q 043350 164 CTD-TQLWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWK 240 (1133)
Q Consensus 164 s~d-g~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd 240 (1133)
+.+ +.+++ +.+..+..|+..+....+. +. ..|.....+..+.+|.++|.+++|+| ++++|++|+.|++|++||
T Consensus 29 ~~d~~~~~~~n~~~~a~~w~~~gg~~v~~-~~---~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWd 104 (493)
T PTZ00421 29 LWDCSNTIACNDRFIAVPWQQLGSTAVLK-HT---DYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWG 104 (493)
T ss_pred cCCCCCcEeECCceEEEEEecCCceEEee-cc---ccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEe
Confidence 445 44555 6666777887655322111 00 01222222345678999999999999 889999999999999999
Q ss_pred CCCCCCCCCCCcccccccccCCCCeEEEEEeeCC-c-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEc
Q 043350 241 MDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQG-D-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDL 318 (1133)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g-~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~ 318 (1133)
+..... .......+..+.+|...|.+|+|+|++ + |+||+.|++|+|||+++
T Consensus 105 i~~~~~-~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t-------------------------- 157 (493)
T PTZ00421 105 IPEEGL-TQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER-------------------------- 157 (493)
T ss_pred cCCCcc-ccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC--------------------------
Confidence 975221 011113466789999999999999986 4 99999999999999842
Q ss_pred cCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEE
Q 043350 319 RAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFV 398 (1133)
Q Consensus 319 ~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~la 398 (1133)
++.+..+..|...|.+++|+|++.+ |+
T Consensus 158 --------------------------------------------g~~~~~l~~h~~~V~sla~spdG~l---------La 184 (493)
T PTZ00421 158 --------------------------------------------GKAVEVIKCHSDQITSLEWNLDGSL---------LC 184 (493)
T ss_pred --------------------------------------------CeEEEEEcCCCCceEEEEEECCCCE---------EE
Confidence 2334456678888999999999999 99
Q ss_pred eeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCC-EEEEEECCCC-eEEEEe----cCCeEEEEeCC-C-C
Q 043350 399 SSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKR-TEAMVLTADG-MIWSGC----TNGLLVQWDGN-G-N 470 (1133)
Q Consensus 399 sgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~-V~sl~~spdg-~L~sgs----~DG~I~vWd~~-g-~ 470 (1133)
+++.|++|+.|+.+.... +.. +.+|... +..+.+.+++ .+++++ .|+.|++||+. . .
T Consensus 185 tgs~Dg~IrIwD~rsg~~-------v~t--------l~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 185 TTSKDKKLNIIDPRDGTI-------VSS--------VEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred EecCCCEEEEEECCCCcE-------EEE--------EecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 999999998777553221 111 1223322 3345567776 666543 48999999994 3 4
Q ss_pred eeEEEecCC-cceeE--EecCCCEEEEEe-cCCeEEEEeCCC-Ccceeeec-cccCeEEeeecccceeeecccCCeeecc
Q 043350 471 RVSDILHHQ-CAVQC--FCTYGSRMYVGY-VSGYLQILDLDG-NLTASWIA-HSSPVLKLAVGVDHIYSLAAHGGIRGWT 544 (1133)
Q Consensus 471 ~l~~~~~h~-~~V~~--fs~dg~~Lasgs-~DG~I~vwd~~g-~~l~~~~~-H~~~V~~l~fs~~~L~S~s~Dg~I~lW~ 544 (1133)
++.....+. ..+.. |++++++|++|+ .||.|++||+.. +++..+.. +..++..++|..++.+-...--..|++.
T Consensus 250 p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~~dv~~~Ei~r~~~ 329 (493)
T PTZ00421 250 PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWSLDTRKCEIARFYA 329 (493)
T ss_pred ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccccccccceeeeEEEE
Confidence 554444333 23333 899999999888 599999999974 44444433 4567777877744433333333345555
Q ss_pred c
Q 043350 545 F 545 (1133)
Q Consensus 545 l 545 (1133)
+
T Consensus 330 l 330 (493)
T PTZ00421 330 L 330 (493)
T ss_pred e
Confidence 4
No 90
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.84 E-value=1.9e-19 Score=216.11 Aligned_cols=317 Identities=15% Similarity=0.148 Sum_probs=219.0
Q ss_pred cccCCCCCEEEEec--CCCeEEeccCCCCCCC--------CCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCC
Q 043350 109 KPFQPMVEFIGSGG--GTGIFKVPSRAAVHPG--------RPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQEC 175 (1133)
Q Consensus 109 ~~~~p~g~~lasgs--~dg~irlW~~~~~~~g--------~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg 175 (1133)
+..+|||..+|||| .||.++||+.+...+. ...+..+..|.+ .|.|+. ++||++|| |.|+
T Consensus 19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~-------sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 19 IDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDG-------SVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred EEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccC-------ceeEEEECCCCCeEeeccCcc
Confidence 66799999999999 9999999997654211 112455667777 999999 99999999 8899
Q ss_pred cEEEeeCCC-CCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCccc
Q 043350 176 GVRFWNLED-SYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKE 254 (1133)
Q Consensus 176 ~VrvWdl~~-~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~ 254 (1133)
.|.||+... ......|.++....-..-..-.++.+|.+.|..++|+|++.+||++|.|++|.||+... |+.
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t--------F~~ 163 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT--------FEL 163 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccc--------cee
Confidence 999999884 22222222110000001112346678999999999999999999999999999999987 577
Q ss_pred ccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCC--CceeeEeCCCCceEEEEeecceEEEccCceeeeccccCC
Q 043350 255 GLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWES--IEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSIS 331 (1133)
Q Consensus 255 ~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~--~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~ 331 (1133)
+..+.+|.+.|..+.|.|-|+ |+|-+.|++|+||++.. ..+.+..+.+...+-+. +..+. .
T Consensus 164 ~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~-----f~RlS-----------W 227 (942)
T KOG0973|consen 164 LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTF-----FLRLS-----------W 227 (942)
T ss_pred eeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcce-----eeecc-----------c
Confidence 889999999999999999999 99999999999999765 23333222221110000 22222 4
Q ss_pred CCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccc
Q 043350 332 STEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQ 411 (1133)
Q Consensus 332 ~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~ 411 (1133)
+|++.++++.+... ..-.++.|.+-.+.+.-..|-+|..++.++.|+|.-- +.. -.+|+..
T Consensus 228 SPDG~~las~nA~n----~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lf---e~~--------~~ng~~~---- 288 (942)
T KOG0973|consen 228 SPDGHHLASPNAVN----GGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLF---ERN--------NKNGTST---- 288 (942)
T ss_pred CCCcCeecchhhcc----CCcceeEEEecCCceeeeeeecCCCceEEEEeChHHh---ccc--------cccCCcc----
Confidence 56666666553322 4455677777666777778889999999999988310 000 0011110
Q ss_pred cccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeC-CCCeeEEEec-CCcceeE--Eec
Q 043350 412 RSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDG-NGNRVSDILH-HQCAVQC--FCT 487 (1133)
Q Consensus 412 ~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~-~g~~l~~~~~-h~~~V~~--fs~ 487 (1133)
. .. .-.+ .+++|+.|++|.||.. .-+++..+.. -...|.. |+|
T Consensus 289 ------------------~-------~~-~~y~-------i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWsp 335 (942)
T KOG0973|consen 289 ------------------Q-------PN-CYYC-------IAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSP 335 (942)
T ss_pred ------------------C-------CC-cceE-------EEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcC
Confidence 0 00 0001 4789999999999998 3344433322 3456666 999
Q ss_pred CCCEEEEEecCCeEEEEeCCC
Q 043350 488 YGSRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 488 dg~~Lasgs~DG~I~vwd~~g 508 (1133)
||-.|+++|.||+|.++..+.
T Consensus 336 dG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 336 DGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred CCCeEEEEecCCeEEEEEcch
Confidence 999999999999999999763
No 91
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=2.4e-19 Score=186.98 Aligned_cols=264 Identities=15% Similarity=0.224 Sum_probs=183.2
Q ss_pred eEEEEE-eC-CCCeE-E-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCC
Q 043350 158 FLRNIA-CT-DTQLW-A-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKD 233 (1133)
Q Consensus 158 ~V~~v~-s~-dg~ll-a-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~D 233 (1133)
.|.+|+ || ...++ | |-|++||+|+++..-... +.....|.+||.|++|+.+|..+++|+.|
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~---------------~ka~~~~~~PvL~v~WsddgskVf~g~~D 93 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV---------------PKAQQSHDGPVLDVCWSDDGSKVFSGGCD 93 (347)
T ss_pred chheeEeccccCceEEecccCCceEEEEEecCCccc---------------chhhhccCCCeEEEEEccCCceEEeeccC
Confidence 788888 77 44555 4 889999999998731111 22345688999999999999999999999
Q ss_pred CeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc---EEEEeCCCcEEEEeCCCCceeeEeC-CCCceEEEE
Q 043350 234 GKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD---LWSGGEGGVIKIWPWESIEKSLSLK-PEEKHMAAL 309 (1133)
Q Consensus 234 g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~---L~Sgs~DgtI~iWdl~~~~~~l~~~-~~~~~l~s~ 309 (1133)
+.+++||+.. .+...+..|.++|.++.|-+... |+|||.|.+||.||.+.......+. |+...
T Consensus 94 k~~k~wDL~S---------~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvY---- 160 (347)
T KOG0647|consen 94 KQAKLWDLAS---------GQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVY---- 160 (347)
T ss_pred CceEEEEccC---------CCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceee----
Confidence 9999999998 66778899999999999987654 9999999999999998632222221 11111
Q ss_pred eecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCcee-EEEec-CCcceeEEEeCCCCCc
Q 043350 310 LVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELL-KVFNI-EGHIENRVDTQSVQDQ 387 (1133)
Q Consensus 310 ~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l-~~~~~-h~~~v~~l~~sp~g~~ 387 (1133)
..|+ .....+++ ..+..|.+|+++.+... +.... -.-.+.+++...+.+.
T Consensus 161 -----a~Dv-------------~~pm~vVa----------ta~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~ 212 (347)
T KOG0647|consen 161 -----AADV-------------LYPMAVVA----------TAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDG 212 (347)
T ss_pred -----ehhc-------------cCceeEEE----------ecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCc
Confidence 1111 11222233 45677777777655432 12211 1224678999998888
Q ss_pred cccccceEEEEeeCCCCccc--cccc---cccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCe
Q 043350 388 PVEDEMKVKFVSSNKKEKPH--GFLQ---RSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGL 461 (1133)
Q Consensus 388 ~~e~e~~v~lasgs~Dg~i~--~~~~---~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~ 461 (1133)
.+.|+-.|.+- ..+. .....+..|... +...+.--.|++++|+|.. .|+|++.||+
T Consensus 213 ---------~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~---------~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt 274 (347)
T KOG0647|consen 213 ---------FALGSIEGRVAIQYIDDPNPKDNFTFKCHRST---------NSVNDDVYAVNSIAFHPVHGTLVTAGSDGT 274 (347)
T ss_pred ---------eEeeeecceEEEEecCCCCccCceeEEEeccC---------CCCCCceEEecceEeecccceEEEecCCce
Confidence 88999999875 1111 111222222211 0011112357889999977 9999999999
Q ss_pred EEEEeCCC-CeeEEEecCCcceeE--EecCCCEEEEE
Q 043350 462 LVQWDGNG-NRVSDILHHQCAVQC--FCTYGSRMYVG 495 (1133)
Q Consensus 462 I~vWd~~g-~~l~~~~~h~~~V~~--fs~dg~~Lasg 495 (1133)
+.+||.+. ..|.+...|..+|+| |+.+|.++|=+
T Consensus 275 f~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 275 FSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred EEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 99999954 788888899999998 99999876533
No 92
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.84 E-value=9.5e-20 Score=199.95 Aligned_cols=279 Identities=15% Similarity=0.178 Sum_probs=217.9
Q ss_pred ccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEE
Q 043350 209 SANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKI 287 (1133)
Q Consensus 209 ~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~i 287 (1133)
..|..-|++++++...+.++||++ |.|+|||+..... ..+...+-. ....+.|+++...|||+ |++|++-.++.|
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~--k~PvsqLdc-l~rdnyiRSckL~pdgrtLivGGeastlsi 491 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN--KSPVSQLDC-LNRDNYIRSCKLLPDGRTLIVGGEASTLSI 491 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC--CCccccccc-cCcccceeeeEecCCCceEEeccccceeee
Confidence 357778899999999999999998 8899999986332 222222222 23467899999999999 999999999999
Q ss_pred EeCCCCceeeEeCCC--CceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCce
Q 043350 288 WPWESIEKSLSLKPE--EKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKEL 365 (1133)
Q Consensus 288 Wdl~~~~~~l~~~~~--~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~ 365 (1133)
||+......+...-. ... +..+. .+++.++++++ ..||.|.|||+++..+
T Consensus 492 WDLAapTprikaeltssapa---------CyALa-----------~spDakvcFsc--------csdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 492 WDLAAPTPRIKAELTSSAPA---------CYALA-----------ISPDAKVCFSC--------CSDGNIAVWDLHNQTL 543 (705)
T ss_pred eeccCCCcchhhhcCCcchh---------hhhhh-----------cCCccceeeee--------ccCCcEEEEEccccee
Confidence 999763222211100 000 11111 35666666666 8999999999999999
Q ss_pred eEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEE
Q 043350 366 LKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAM 445 (1133)
Q Consensus 366 l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl 445 (1133)
++.|++|.+.+.|+.++++|.. |.+|+.|.+++.|+.+....+..|. ....|.++
T Consensus 544 VrqfqGhtDGascIdis~dGtk---------lWTGGlDntvRcWDlregrqlqqhd----------------F~SQIfSL 598 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTK---------LWTGGLDNTVRCWDLREGRQLQQHD----------------FSSQIFSL 598 (705)
T ss_pred eecccCCCCCceeEEecCCCce---------eecCCCccceeehhhhhhhhhhhhh----------------hhhhheec
Confidence 9999999999999999999998 9999999999999988666554432 23556777
Q ss_pred EECCCC-eEEEEecCCeEEEEeCCCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCC-CCcceeeeccccCe
Q 043350 446 VLTADG-MIWSGCTNGLLVQWDGNGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLD-GNLTASWIAHSSPV 521 (1133)
Q Consensus 446 ~~spdg-~L~sgs~DG~I~vWd~~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~H~~~V 521 (1133)
...|.+ +|+.|-+++.+.+-..++.....+..|.+-|.+ |++.|+++++.+.|..+..|..- |..+.. .....+|
T Consensus 599 g~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFq-skE~SsV 677 (705)
T KOG0639|consen 599 GYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSV 677 (705)
T ss_pred ccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceee-ccccCcc
Confidence 788999 999999999999999988777888889999998 99999999999999999999975 332221 2345788
Q ss_pred EEeeec--ccceeeecccCCeeeccc
Q 043350 522 LKLAVG--VDHIYSLAAHGGIRGWTF 545 (1133)
Q Consensus 522 ~~l~fs--~~~L~S~s~Dg~I~lW~l 545 (1133)
.++.++ +++|+|+|.|....++.+
T Consensus 678 lsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 678 LSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeeeeccCceEEEecCCCcceEEEEE
Confidence 888777 999999999988777654
No 93
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.84 E-value=1.3e-19 Score=199.93 Aligned_cols=309 Identities=14% Similarity=0.161 Sum_probs=211.3
Q ss_pred CCcccccCCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCC-C
Q 043350 91 NEDYVCPGPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDT-Q 168 (1133)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg-~ 168 (1133)
.|.....+++..+++ ..+.|.|-.++|||.|-+|++||...+.........|.+-.. ..|+++. ++.| +
T Consensus 158 shEi~l~hgtk~Vsa---l~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~------h~i~sl~ys~Tg~~ 228 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSA---LAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCET------HQINSLQYSVTGDQ 228 (641)
T ss_pred cceEeccCCceEEEE---eeecCCCceeeeccccceEEEEecccccccchhhhccCcccc------cccceeeecCCCCe
Confidence 344445567777666 778999999999999999999999866444332233333221 2678888 6644 5
Q ss_pred eEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCC-ceeeccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCC
Q 043350 169 LWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAA-PFYESANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTL 245 (1133)
Q Consensus 169 lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~-~~~~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~ 245 (1133)
+|+ +....++|+|-++....-. -+||+... .+...+|...++|.+|+| ....++|++.||++|||++....
T Consensus 229 iLvvsg~aqakl~DRdG~~~~e~------~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k 302 (641)
T KOG0772|consen 229 ILVVSGSAQAKLLDRDGFEIVEF------SKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK 302 (641)
T ss_pred EEEEecCcceeEEccCCceeeee------eccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCch
Confidence 666 8899999999887221100 12344333 345678999999999999 45678999999999999998622
Q ss_pred CCCCCCccccc---ccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCc
Q 043350 246 DDANNPFKEGL---SWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQ 321 (1133)
Q Consensus 246 ~~~~~~~~~~~---~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~ 321 (1133)
. ..++. .-.+-+-++++++|+++|. |++|+.||.|.+|+......
T Consensus 303 ~-----q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v-------------------------- 351 (641)
T KOG0772|consen 303 S-----QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV-------------------------- 351 (641)
T ss_pred h-----heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccc--------------------------
Confidence 1 11111 1123466899999999999 99999999999999743100
Q ss_pred eeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeC
Q 043350 322 VTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSN 401 (1133)
Q Consensus 322 ~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs 401 (1133)
+..-+++.-...++.|++|.||++|++ |++-+
T Consensus 352 ---------------------------------------~p~~~vk~AH~~g~~Itsi~FS~dg~~---------LlSRg 383 (641)
T KOG0772|consen 352 ---------------------------------------RPVMKVKDAHLPGQDITSISFSYDGNY---------LLSRG 383 (641)
T ss_pred ---------------------------------------ccceEeeeccCCCCceeEEEeccccch---------hhhcc
Confidence 000011111122347999999999999 99999
Q ss_pred CCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEec------CCeEEEEeCC-CCeeE
Q 043350 402 KKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCT------NGLLVQWDGN-GNRVS 473 (1133)
Q Consensus 402 ~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~------DG~I~vWd~~-g~~l~ 473 (1133)
.|++++.|+.+..+.-.... . |. ...-.-+.++|||+. .|++|.. .|++.+||.. -..++
T Consensus 384 ~D~tLKvWDLrq~kkpL~~~--------t--gL--~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ 451 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFKKPLNVR--------T--GL--PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVY 451 (641)
T ss_pred CCCceeeeeccccccchhhh--------c--CC--CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEE
Confidence 99999988766433211000 0 00 011223457799999 8888753 5789999984 47777
Q ss_pred EEecCCcce-eE-EecCCCEEEEEecCCeEEEEe
Q 043350 474 DILHHQCAV-QC-FCTYGSRMYVGYVSGYLQILD 505 (1133)
Q Consensus 474 ~~~~h~~~V-~~-fs~dg~~Lasgs~DG~I~vwd 505 (1133)
++......| .| |+|.=+.|.+|+.||+++||=
T Consensus 452 ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 452 KIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred EecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 776654444 45 999988999999999999874
No 94
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=7.1e-19 Score=184.48 Aligned_cols=262 Identities=16% Similarity=0.232 Sum_probs=188.8
Q ss_pred EEEecCCCeEEeccCCCCC--------CCCCCeeeeccCCCccccccceEEEEEeCCCCeEE--ecCCcEEEeeCCCCCC
Q 043350 118 IGSGGGTGIFKVPSRAAVH--------PGRPPCLELRPHPLKETQAGRFLRNIACTDTQLWA--GQECGVRFWNLEDSYE 187 (1133)
Q Consensus 118 lasgs~dg~irlW~~~~~~--------~g~~~~~~l~~H~~~~~~~g~~V~~v~s~dg~lla--s~Dg~VrvWdl~~~~~ 187 (1133)
|+.|+....|.-++..... |.-.|+..+..|.+ .+++++. ++.++| |.|-+|+|||+.....
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~-------sitavAV-s~~~~aSGssDetI~IYDm~k~~q 75 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAG-------SITALAV-SGPYVASGSSDETIHIYDMRKRKQ 75 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeecccccccccc-------ceeEEEe-cceeEeccCCCCcEEEEeccchhh
Confidence 5667777776666544221 11113566778888 8998885 356677 8899999999987433
Q ss_pred cCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCC--EEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCe
Q 043350 188 PGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNR--LVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPV 265 (1133)
Q Consensus 188 ~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~--~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V 265 (1133)
.. ....|.+.|+|+.|.++-. .|++|+.||.|.+|+... +.++..+++|.+.|
T Consensus 76 lg-----------------~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~--------W~~~~slK~H~~~V 130 (362)
T KOG0294|consen 76 LG-----------------ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS--------WELLKSLKAHKGQV 130 (362)
T ss_pred hc-----------------ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC--------eEEeeeeccccccc
Confidence 21 3557888999999999654 899999999999999987 67888999999999
Q ss_pred EEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCc
Q 043350 266 LAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHAR 344 (1133)
Q Consensus 266 ~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~ 344 (1133)
+.|+.+|.|+ -+|.+.|+.+++|++-.+-..+
T Consensus 131 t~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~----------------------------------------------- 163 (362)
T KOG0294|consen 131 TDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF----------------------------------------------- 163 (362)
T ss_pred ceeEecCCCceEEEEcCCceeeeehhhcCccce-----------------------------------------------
Confidence 9999999999 8899999999999984321110
Q ss_pred eEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCce
Q 043350 345 ARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAV 424 (1133)
Q Consensus 345 i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V 424 (1133)
.++. ...-+.+.|+|.|.+ ++.++.++.-. |....-..+.
T Consensus 164 -----------------------v~~L-~~~at~v~w~~~Gd~---------F~v~~~~~i~i-~q~d~A~v~~------ 203 (362)
T KOG0294|consen 164 -----------------------VLNL-KNKATLVSWSPQGDH---------FVVSGRNKIDI-YQLDNASVFR------ 203 (362)
T ss_pred -----------------------eecc-CCcceeeEEcCCCCE---------EEEEeccEEEE-EecccHhHhh------
Confidence 0000 011123788888887 66666554321 1110000000
Q ss_pred EEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeCC-CCeeEEEecCCcceeEE----ecCCCEEEEEecCC
Q 043350 425 RRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGN-GNRVSDILHHQCAVQCF----CTYGSRMYVGYVSG 499 (1133)
Q Consensus 425 ~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~-g~~l~~~~~h~~~V~~f----s~dg~~Lasgs~DG 499 (1133)
......++.++.|...+.|++|..|+.|.+||.+ +.++..+.+|...|..+ .|++.+|+++|.||
T Consensus 204 ----------~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG 273 (362)
T KOG0294|consen 204 ----------EIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDG 273 (362)
T ss_pred ----------hhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCc
Confidence 1112244666667666699999999999999995 78999999999999983 35678999999999
Q ss_pred eEEEEeCCCC
Q 043350 500 YLQILDLDGN 509 (1133)
Q Consensus 500 ~I~vwd~~g~ 509 (1133)
.|+|||++.+
T Consensus 274 ~I~vWd~~~~ 283 (362)
T KOG0294|consen 274 FIKVWDIDME 283 (362)
T ss_pred eEEEEEcccc
Confidence 9999999753
No 95
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.6e-18 Score=181.37 Aligned_cols=279 Identities=16% Similarity=0.167 Sum_probs=211.5
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeC--CCcEEE
Q 043350 211 NTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGE--GGVIKI 287 (1133)
Q Consensus 211 h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~--DgtI~i 287 (1133)
-.+.|.++.|+++|.+|++++.|-++++||...+ +++.++..+.-.|..++|..... ++.++. |.+||.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g--------~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG--------KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC--------ceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 3558999999999999999999999999998752 55667777777888999988777 666665 899999
Q ss_pred EeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeE
Q 043350 288 WPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLK 367 (1133)
Q Consensus 288 Wdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~ 367 (1133)
-++.+....-.+..+... |..++..|.. -.++|+ +.|++|++||++..++..
T Consensus 85 Lsl~dNkylRYF~GH~~~------------------V~sL~~sP~~--d~FlS~--------S~D~tvrLWDlR~~~cqg 136 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKR------------------VNSLSVSPKD--DTFLSS--------SLDKTVRLWDLRVKKCQG 136 (311)
T ss_pred EEeecCceEEEcCCCCce------------------EEEEEecCCC--CeEEec--------ccCCeEEeeEecCCCCce
Confidence 998764222223333332 2222221333 445566 789999999999888877
Q ss_pred EEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEE
Q 043350 368 VFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVL 447 (1133)
Q Consensus 368 ~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~ 447 (1133)
.+.....++ .+|.|.|-+ +|++...+.|+.++.|.... ++-...... .+.....+.+.|
T Consensus 137 ~l~~~~~pi--~AfDp~GLi---------fA~~~~~~~IkLyD~Rs~dk-----gPF~tf~i~-----~~~~~ew~~l~F 195 (311)
T KOG1446|consen 137 LLNLSGRPI--AAFDPEGLI---------FALANGSELIKLYDLRSFDK-----GPFTTFSIT-----DNDEAEWTDLEF 195 (311)
T ss_pred EEecCCCcc--eeECCCCcE---------EEEecCCCeEEEEEecccCC-----CCceeEccC-----CCCccceeeeEE
Confidence 776555544 789999998 99998888887555443211 111111111 244567888999
Q ss_pred CCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcc----eeE-EecCCCEEEEEecCCeEEEEeCC-CCcceeeec-cc
Q 043350 448 TADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCA----VQC-FCTYGSRMYVGYVSGYLQILDLD-GNLTASWIA-HS 518 (1133)
Q Consensus 448 spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~----V~~-fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~-H~ 518 (1133)
|||| .|+.+...+.+.+.|. +|..+.++..+... +.+ |+||++++++|+.||+|.+|+++ |+.+..|++ |.
T Consensus 196 S~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~ 275 (311)
T KOG1446|consen 196 SPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNG 275 (311)
T ss_pred cCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCC
Confidence 9999 8888889999999999 99999998875443 345 99999999999999999999997 678889998 79
Q ss_pred cCeEEeeecccceeeecccCCeeecccc
Q 043350 519 SPVLKLAVGVDHIYSLAAHGGIRGWTFT 546 (1133)
Q Consensus 519 ~~V~~l~fs~~~L~S~s~Dg~I~lW~l~ 546 (1133)
+++.++.|+.++..-++.+..+-+|-..
T Consensus 276 ~~~~~~~fnP~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 276 GPVSCVRFNPRYAMFVSASSNLVFWLPD 303 (311)
T ss_pred CCccccccCCceeeeeecCceEEEEecc
Confidence 9999999998888888889999999644
No 96
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3.9e-18 Score=194.74 Aligned_cols=374 Identities=12% Similarity=0.149 Sum_probs=249.1
Q ss_pred CcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE-ecCCcEEEeeCC
Q 043350 106 QQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA-GQECGVRFWNLE 183 (1133)
Q Consensus 106 ~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla-s~Dg~VrvWdl~ 183 (1133)
+....|+-....||.+-.+|.|.+|+... +-.....+.+++. +.|.+++ +++++++. +.+|.|.-||+.
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~---~w~~~~vi~g~~d------rsIE~L~W~e~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSN---NWFLEPVIHGPED------RSIESLAWAEGGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCC---CceeeEEEecCCC------CceeeEEEccCCeEEeecCCceEEEEecc
Confidence 33467777788899999999999999873 3332455666665 3788999 88888888 999999999998
Q ss_pred CCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCC
Q 043350 184 DSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRG 263 (1133)
Q Consensus 184 ~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~ 263 (1133)
+... .+......++|.+++.+|.+..++.|+.||.+..++...+.- .--..+.-.++
T Consensus 99 ~lk~-----------------~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I------~~~r~l~rq~s 155 (691)
T KOG2048|consen 99 TLKQ-----------------KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI------TYKRSLMRQKS 155 (691)
T ss_pred cCce-----------------eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceE------EEEeecccccc
Confidence 7533 223445567899999999999999999999777777665111 11223444578
Q ss_pred CeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceee--EeCCCCceEEEEee-cce-EEEccCceeeeccccCCCCCeEEE
Q 043350 264 PVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSL--SLKPEEKHMAALLV-ERS-FIDLRAQVTVNGACSISSTEIKCM 338 (1133)
Q Consensus 264 ~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l--~~~~~~~~l~s~~~-d~s-~~d~~~~~~v~~~~~~~~~~~~~l 338 (1133)
.|.+|+|+|++. |++|+.||.|++||...+.... ...-++. .. +.. +|.+. .. .+ -.+
T Consensus 156 RvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l-----~k~~~~iVWSv~---------~L--rd-~tI 218 (691)
T KOG2048|consen 156 RVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRL-----SKREPTIVWSVL---------FL--RD-STI 218 (691)
T ss_pred eEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeeccccc-----ccCCceEEEEEE---------Ee--ec-CcE
Confidence 999999999999 9999999999999997642221 1000000 00 000 33332 11 11 123
Q ss_pred EecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccc-----
Q 043350 339 LSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRS----- 413 (1133)
Q Consensus 339 ~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~----- 413 (1133)
+++ .+.|+|++||...|.+++.+..|...|.+++..++++. +++++.|+++..+....
T Consensus 219 ~sg--------DS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~---------vfsaGvd~~ii~~~~~~~~~~w 281 (691)
T KOG2048|consen 219 ASG--------DSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDR---------VFSAGVDPKIIQYSLTTNKSEW 281 (691)
T ss_pred EEe--------cCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCe---------EEEccCCCceEEEEecCCccce
Confidence 444 56799999999999999999999999999999999888 88888888876221110
Q ss_pred --cceeeccCCceEEEEEecC----------------Cc-----------------------------------------
Q 043350 414 --RNAIMGAADAVRRVATRGA----------------GA----------------------------------------- 434 (1133)
Q Consensus 414 --~~~~~~~~~~V~~v~~~p~----------------g~----------------------------------------- 434 (1133)
......|...|++++..++ +.
T Consensus 282 v~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlG 361 (691)
T KOG2048|consen 282 VINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLG 361 (691)
T ss_pred eeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceecc
Confidence 0001122223333322211 00
Q ss_pred ----------------ccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCCC--C-------------------------
Q 043350 435 ----------------FVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGNG--N------------------------- 470 (1133)
Q Consensus 435 ----------------~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g--~------------------------- 470 (1133)
+......|.+.+.+|+| .|+.+. =..+++|.++- +
T Consensus 362 S~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~ 440 (691)
T KOG2048|consen 362 SVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAIST-VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDK 440 (691)
T ss_pred CcccccccChhhheeeecCCccceeeeccCCCCCEEEEee-ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecC
Confidence 12233458888999999 666554 22344443311 0
Q ss_pred -----------eeEEE-------------ec--CCcceeE--EecCCCEEEEEecCCeEEEEeCCCCcceeee-ccccCe
Q 043350 471 -----------RVSDI-------------LH--HQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGNLTASWI-AHSSPV 521 (1133)
Q Consensus 471 -----------~l~~~-------------~~--h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~~l~~~~-~H~~~V 521 (1133)
.+..+ .. ....|+. .+++|+|||+.+.+|.|.+|++++.....+. .-...|
T Consensus 441 ~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~v 520 (691)
T KOG2048|consen 441 NKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDV 520 (691)
T ss_pred ceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcce
Confidence 00000 00 1123333 7899999999999999999999875544444 344788
Q ss_pred EEeeec---ccceeeecccCCeeecccc
Q 043350 522 LKLAVG---VDHIYSLAAHGGIRGWTFT 546 (1133)
Q Consensus 522 ~~l~fs---~~~L~S~s~Dg~I~lW~l~ 546 (1133)
++++|+ ...|+-+..+++|.-+|++
T Consensus 521 Ta~~~~~~~~~~lvvats~nQv~efdi~ 548 (691)
T KOG2048|consen 521 TAAAFSPFVRNRLVVATSNNQVFEFDIE 548 (691)
T ss_pred eeeeccccccCcEEEEecCCeEEEEecc
Confidence 888888 6677777888899988873
No 97
>PTZ00420 coronin; Provisional
Probab=99.83 E-value=1.5e-18 Score=207.68 Aligned_cols=249 Identities=12% Similarity=0.080 Sum_probs=170.2
Q ss_pred cCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCCCCCCC
Q 043350 173 QECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCG-NRLVWTGHKDGKIRSWKMDQTLDDANNP 251 (1133)
Q Consensus 173 ~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd-~~~LaSgs~Dg~V~vWd~~~~~~~~~~~ 251 (1133)
.++.|++|+...... ...+.+|.++|.+++|+|+ +.+||||+.||+|+|||+..+.......
T Consensus 52 ~~gvI~L~~~~r~~~-----------------v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i 114 (568)
T PTZ00420 52 LIGAIRLENQMRKPP-----------------VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI 114 (568)
T ss_pred ceeEEEeeecCCCce-----------------EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc
Confidence 456788887654211 2245678899999999996 7899999999999999997521100000
Q ss_pred cccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeecccc
Q 043350 252 FKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACS 329 (1133)
Q Consensus 252 ~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~ 329 (1133)
...+..+.+|...|.+|+|+|++. |+|||.|++|+|||+++.
T Consensus 115 ~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg------------------------------------ 158 (568)
T PTZ00420 115 KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE------------------------------------ 158 (568)
T ss_pred ccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC------------------------------------
Confidence 123446789999999999999987 679999999999998532
Q ss_pred CCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccc
Q 043350 330 ISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGF 409 (1133)
Q Consensus 330 ~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~ 409 (1133)
+.+..+. +...|.+++|+|++.+ |++++.|++++.|
T Consensus 159 ----------------------------------~~~~~i~-~~~~V~SlswspdG~l---------Lat~s~D~~IrIw 194 (568)
T PTZ00420 159 ----------------------------------KRAFQIN-MPKKLSSLKWNIKGNL---------LSGTCVGKHMHII 194 (568)
T ss_pred ----------------------------------cEEEEEe-cCCcEEEEEECCCCCE---------EEEEecCCEEEEE
Confidence 1111222 2345889999999999 9999999999877
Q ss_pred cccccc---eeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCC----eEEEEeCC--CCeeEEEec--
Q 043350 410 LQRSRN---AIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNG----LLVQWDGN--GNRVSDILH-- 477 (1133)
Q Consensus 410 ~~~~~~---~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG----~I~vWd~~--g~~l~~~~~-- 477 (1133)
+.+... .+.+|.+.+... .++...|++++ +|++++.|+ .|++||+. +.++..+..
T Consensus 195 D~Rsg~~i~tl~gH~g~~~s~-------------~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~ 261 (568)
T PTZ00420 195 DPRKQEIASSFHIHDGGKNTK-------------NIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN 261 (568)
T ss_pred ECCCCcEEEEEecccCCceeE-------------EEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC
Confidence 755332 223333222111 12233456787 888877764 79999995 456655433
Q ss_pred CCcceeE-Ee-cCCCEEEEEecCCeEEEEeCCCCcceeeec--cccCeEEeeecccce
Q 043350 478 HQCAVQC-FC-TYGSRMYVGYVSGYLQILDLDGNLTASWIA--HSSPVLKLAVGVDHI 531 (1133)
Q Consensus 478 h~~~V~~-fs-~dg~~Lasgs~DG~I~vwd~~g~~l~~~~~--H~~~V~~l~fs~~~L 531 (1133)
+.+.+.. +. ++|.++++|+.|++|++|++....+..+.. +..++.+++|..++.
T Consensus 262 ~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 262 ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred CccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence 4444444 44 458899999999999999997543222221 567888888875443
No 98
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.83 E-value=2e-19 Score=215.85 Aligned_cols=293 Identities=15% Similarity=0.179 Sum_probs=219.1
Q ss_pred eEEEEE-eCCCCeEE--e--cCCcEEEeeCCCCCCcCcCCCccccCCCCC--CCceeeccCCCCeEEEEEeCCCCEEEEE
Q 043350 158 FLRNIA-CTDTQLWA--G--QECGVRFWNLEDSYEPGAGIGGRVRRGDED--AAPFYESANTSPTMCLMVDCGNRLVWTG 230 (1133)
Q Consensus 158 ~V~~v~-s~dg~lla--s--~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~--~~~~~~~~h~s~V~~la~spd~~~LaSg 230 (1133)
.|.+|. +|+|..+| + .|+.++||+.+......... ++. ..-....-|.+.|.|+.|+|||++||+|
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~-------~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsG 87 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEK-------NENLPKHLCTMDDHDGSVNCVRFSPDGSYLASG 87 (942)
T ss_pred eEEEEEecCCceeEecCCccccccceeeccccccchhhhh-------hcccchhheeeccccCceeEEEECCCCCeEeec
Confidence 588888 99999999 4 79999999987632211000 010 0022445699999999999999999999
Q ss_pred eCCCeEEEEeCCC----CC------CCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEe
Q 043350 231 HKDGKIRSWKMDQ----TL------DDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSL 299 (1133)
Q Consensus 231 s~Dg~V~vWd~~~----~~------~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~ 299 (1133)
|.|+.|.||.... .. ......++.+..+.+|.+.|..++|+|++. |+|+|.|++|.||+.
T Consensus 88 SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~--------- 158 (942)
T KOG0973|consen 88 SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNA--------- 158 (942)
T ss_pred cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcc---------
Confidence 9999999999772 11 122345678889999999999999999999 999999999999876
Q ss_pred CCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEE
Q 043350 300 KPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRV 379 (1133)
Q Consensus 300 ~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l 379 (1133)
++.+.++++.+|...|..+
T Consensus 159 -------------------------------------------------------------~tF~~~~vl~~H~s~VKGv 177 (942)
T KOG0973|consen 159 -------------------------------------------------------------KTFELLKVLRGHQSLVKGV 177 (942)
T ss_pred -------------------------------------------------------------ccceeeeeeecccccccce
Confidence 3446678889999999999
Q ss_pred EeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCccc--CCCCCEEEEEECCCC-eEEEE
Q 043350 380 DTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFV--DDTKRTEAMVLTADG-MIWSG 456 (1133)
Q Consensus 380 ~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~--~h~~~V~sl~~spdg-~L~sg 456 (1133)
.|.|-|++ ||+-+.|++++.|...... +.-.-++.|. .-...+..+.+|||| +|++.
T Consensus 178 s~DP~Gky---------~ASqsdDrtikvwrt~dw~-----------i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 178 SWDPIGKY---------FASQSDDRTLKVWRTSDWG-----------IEKSITKPFEESPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred EECCccCe---------eeeecCCceEEEEEcccce-----------eeEeeccchhhCCCcceeeecccCCCcCeecch
Confidence 99999999 9999999999855522111 1111111121 123346778899999 88876
Q ss_pred ec----CCeEEEEeCCC-CeeEEEecCCcceeE--EecC-----CC------------EEEEEecCCeEEEEeCCC-Ccc
Q 043350 457 CT----NGLLVQWDGNG-NRVSDILHHQCAVQC--FCTY-----GS------------RMYVGYVSGYLQILDLDG-NLT 511 (1133)
Q Consensus 457 s~----DG~I~vWd~~g-~~l~~~~~h~~~V~~--fs~d-----g~------------~Lasgs~DG~I~vwd~~g-~~l 511 (1133)
.. -.++.|.+..+ +.-..+-+|..++.| |+|. .+ .+|+|+.|++|.||.... +++
T Consensus 238 nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl 317 (942)
T KOG0973|consen 238 NAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL 317 (942)
T ss_pred hhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence 43 34577777755 566788899999998 7662 11 688999999999999853 443
Q ss_pred eee-eccccCeEEeeec--ccceeeecccCCeeeccccC
Q 043350 512 ASW-IAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 512 ~~~-~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s 547 (1133)
... .--...|.+|+|+ |-.|+.||.||+|.+..++.
T Consensus 318 ~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 318 FVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred hhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 322 2235789999999 88999999999999999865
No 99
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.83 E-value=9.1e-19 Score=203.45 Aligned_cols=381 Identities=13% Similarity=0.114 Sum_probs=269.2
Q ss_pred ccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE---ecCCcEEEeeCC
Q 043350 108 HKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA---GQECGVRFWNLE 183 (1133)
Q Consensus 108 ~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla---s~Dg~VrvWdl~ 183 (1133)
....+|-=+.+|.|..+|+|.+.++.. ++. +.+++...+ .|++++ ..||..+. +..|.+.+||++
T Consensus 207 ~ieqsPaLDVVaiG~~~G~ViifNlK~---dki-l~sFk~d~g-------~VtslSFrtDG~p~las~~~~G~m~~wDLe 275 (910)
T KOG1539|consen 207 AIEQSPALDVVAIGLENGTVIIFNLKF---DKI-LMSFKQDWG-------RVTSLSFRTDGNPLLASGRSNGDMAFWDLE 275 (910)
T ss_pred EeccCCcceEEEEeccCceEEEEEccc---CcE-EEEEEcccc-------ceeEEEeccCCCeeEEeccCCceEEEEEcC
Confidence 366688888999999999999999873 555 778875556 899999 77776554 445889999999
Q ss_pred CCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCC
Q 043350 184 DSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRG 263 (1133)
Q Consensus 184 ~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~ 263 (1133)
+.... ..+...|.+.|..+.|-|....|+|++.|..+++|=.+.+.. .+ +.+..-.||..
T Consensus 276 ~kkl~----------------~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg--~p--R~LR~R~GHs~ 335 (910)
T KOG1539|consen 276 KKKLI----------------NVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDG--VP--RLLRSRGGHSA 335 (910)
T ss_pred CCeee----------------eeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCC--cc--hheeeccCCCC
Confidence 84221 123457888899999999999999999999999997775333 11 55666789999
Q ss_pred CeEEEEEe-eCCc-EEEEeCCCcEEEEeCCCC----------------------------ceeeEeCCCC------ceEE
Q 043350 264 PVLAMIFS-SQGD-LWSGGEGGVIKIWPWESI----------------------------EKSLSLKPEE------KHMA 307 (1133)
Q Consensus 264 ~V~sl~fs-p~g~-L~Sgs~DgtI~iWdl~~~----------------------------~~~l~~~~~~------~~l~ 307 (1133)
|-.++.|. .+|. +.+++.|++.+.+++... ...+.+..++ ..++
T Consensus 336 Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~ 415 (910)
T KOG1539|consen 336 PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVI 415 (910)
T ss_pred CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhccee
Confidence 99999998 5677 999999999998876541 0000110000 0111
Q ss_pred EEeecce---EEEccCce---eeeccccCCCCCe--E-EEEecCCceEEEecCCCceeEeecCCCceeEEE---ecCCcc
Q 043350 308 ALLVERS---FIDLRAQV---TVNGACSISSTEI--K-CMLSDHARARVWCAQPLSFSLWDARSKELLKVF---NIEGHI 375 (1133)
Q Consensus 308 s~~~d~s---~~d~~~~~---~v~~~~~~~~~~~--~-~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~---~~h~~~ 375 (1133)
++..+.. .|+++... .+..-+.....+. . +..+.-|...+-....|.|.+|++++|-..+.| ..|...
T Consensus 416 ~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~ 495 (910)
T KOG1539|consen 416 TAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGE 495 (910)
T ss_pred EEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCc
Confidence 2221111 44444221 1111111111111 1 222333344444467899999999999999998 589999
Q ss_pred eeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEE
Q 043350 376 ENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIW 454 (1133)
Q Consensus 376 v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~ 454 (1133)
|++++...-++. +++++.+|.++-|+-+.... ...+ .-...+.++..+... .++
T Consensus 496 V~gla~D~~n~~---------~vsa~~~Gilkfw~f~~k~l-------~~~l---------~l~~~~~~iv~hr~s~l~a 550 (910)
T KOG1539|consen 496 VTGLAVDGTNRL---------LVSAGADGILKFWDFKKKVL-------KKSL---------RLGSSITGIVYHRVSDLLA 550 (910)
T ss_pred eeEEEecCCCce---------EEEccCcceEEEEecCCcce-------eeee---------ccCCCcceeeeeehhhhhh
Confidence 999999998888 99999999998444221110 0111 112234445555555 889
Q ss_pred EEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCCCcceeeeccccCeEEeeec--cc
Q 043350 455 SGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGNLTASWIAHSSPVLKLAVG--VD 529 (1133)
Q Consensus 455 sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~~l~~~~~H~~~V~~l~fs--~~ 529 (1133)
.+..|=.|+++|. ..+.++.|.+|+..|+. |||||++|++++.|++|++||+-...+..-..-+.+.++|.|+ ++
T Consensus 551 ~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD 630 (910)
T KOG1539|consen 551 IALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGD 630 (910)
T ss_pred hhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCC
Confidence 9999999999999 45788899999999998 9999999999999999999998643332333456788999999 99
Q ss_pred ceeeeccc-CCeeecc
Q 043350 530 HIYSLAAH-GGIRGWT 544 (1133)
Q Consensus 530 ~L~S~s~D-g~I~lW~ 544 (1133)
+|+|...| ..|.+|.
T Consensus 631 ~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 631 FLATVHVDQNGIYLWS 646 (910)
T ss_pred EEEEEEecCceEEEEE
Confidence 99999888 6799997
No 100
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3.2e-18 Score=170.96 Aligned_cols=289 Identities=15% Similarity=0.162 Sum_probs=205.5
Q ss_pred eEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCC
Q 043350 158 FLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDG 234 (1133)
Q Consensus 158 ~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg 234 (1133)
.|++++ .|.|.+.| +..++.||-..........+|+..+.+. ...-.....|.+.|+|.+|+|+|.+|++|+.|+
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp--~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPP--SVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCC--eEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 789999 99999888 7888999988877666555666321110 000112345889999999999999999999999
Q ss_pred eEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeC----Cc-EEEEe-CCCcEEEEeCCCCceeeEeCCCCceEEE
Q 043350 235 KIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQ----GD-LWSGG-EGGVIKIWPWESIEKSLSLKPEEKHMAA 308 (1133)
Q Consensus 235 ~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~----g~-L~Sgs-~DgtI~iWdl~~~~~~l~~~~~~~~l~s 308 (1133)
+|++...+...+ +....-..+.-|.+.|..++|..+ |. |+|++ .|..|.+=|...+.....++.+..++.+
T Consensus 112 ~ik~l~fn~dt~---~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghila 188 (350)
T KOG0641|consen 112 TIKVLPFNADTC---NATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILA 188 (350)
T ss_pred eEEEEecccccc---cccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEE
Confidence 999998775332 222334567789999999999865 33 67665 4666666676553322222222223222
Q ss_pred EeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEec-------CCcceeEEEe
Q 043350 309 LLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNI-------EGHIENRVDT 381 (1133)
Q Consensus 309 ~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~-------h~~~v~~l~~ 381 (1133)
. ..-+...++++ +.|.+|+.||++-..++.++.. .+..|.+++.
T Consensus 189 l---------------------yswn~~m~~sg--------sqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v 239 (350)
T KOG0641|consen 189 L---------------------YSWNGAMFASG--------SQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV 239 (350)
T ss_pred E---------------------EEecCcEEEcc--------CCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence 2 12234566777 9999999999998888887643 2356889999
Q ss_pred CCCCCccccccceEEEEeeCCCCcccccc---ccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEe
Q 043350 382 QSVQDQPVEDEMKVKFVSSNKKEKPHGFL---QRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGC 457 (1133)
Q Consensus 382 sp~g~~~~e~e~~v~lasgs~Dg~i~~~~---~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs 457 (1133)
.|.|++ +++|-.|.....++ ++.++. |..|...|.++.|+|.. ++++++
T Consensus 240 dpsgrl---------l~sg~~dssc~lydirg~r~iq~------------------f~phsadir~vrfsp~a~yllt~s 292 (350)
T KOG0641|consen 240 DPSGRL---------LASGHADSSCMLYDIRGGRMIQR------------------FHPHSADIRCVRFSPGAHYLLTCS 292 (350)
T ss_pred CCCcce---------eeeccCCCceEEEEeeCCceeee------------------eCCCccceeEEEeCCCceEEEEec
Confidence 999999 99999988765332 222332 34566677777788877 999999
Q ss_pred cCCeEEEEeCCCCeeEE-----EecCC-cceeE-EecCCCEEEEEecCCeEEEEeCC
Q 043350 458 TNGLLVQWDGNGNRVSD-----ILHHQ-CAVQC-FCTYGSRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 458 ~DG~I~vWd~~g~~l~~-----~~~h~-~~V~~-fs~dg~~Lasgs~DG~I~vwd~~ 507 (1133)
.|..|++-|++|.+..+ +..|. ..|+| |.|..--+++.+.|.++.+|-+.
T Consensus 293 yd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 293 YDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 99999999998854332 33354 56777 99998888999999999999765
No 101
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.83 E-value=8e-19 Score=179.67 Aligned_cols=264 Identities=13% Similarity=0.208 Sum_probs=193.9
Q ss_pred eccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcE
Q 043350 208 ESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVI 285 (1133)
Q Consensus 208 ~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI 285 (1133)
..+|..+|.+++|+-+|..|++|+.|+++++|+++... +..-....+|.+.|-.++|+|... +++++.|.+|
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r------~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~i 89 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR------FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTI 89 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchh------hhhhhcccCCCcchhhheeCCCCCcceEEecCCceE
Confidence 45678899999999999999999999999999998621 233446789999999999999866 9999999999
Q ss_pred EEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCce
Q 043350 286 KIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKEL 365 (1133)
Q Consensus 286 ~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~ 365 (1133)
++||++...........+..+ .+. ..++...++.+ ..|..|...|.++.+.
T Consensus 90 r~wd~r~~k~~~~i~~~~eni--------~i~-------------wsp~g~~~~~~--------~kdD~it~id~r~~~~ 140 (313)
T KOG1407|consen 90 RIWDIRSGKCTARIETKGENI--------NIT-------------WSPDGEYIAVG--------NKDDRITFIDARTYKI 140 (313)
T ss_pred EEEEeccCcEEEEeeccCcce--------EEE-------------EcCCCCEEEEe--------cCcccEEEEEecccce
Confidence 999998743333222211110 111 12233333333 6788888899998887
Q ss_pred eEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEE
Q 043350 366 LKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAM 445 (1133)
Q Consensus 366 l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl 445 (1133)
+...+. ...++.+.|+-++.+ ++..+.-|+|..+.-. +..|-..+..|.....|+
T Consensus 141 ~~~~~~-~~e~ne~~w~~~nd~---------Fflt~GlG~v~ILsyp---------------sLkpv~si~AH~snCicI 195 (313)
T KOG1407|consen 141 VNEEQF-KFEVNEISWNNSNDL---------FFLTNGLGCVEILSYP---------------SLKPVQSIKAHPSNCICI 195 (313)
T ss_pred eehhcc-cceeeeeeecCCCCE---------EEEecCCceEEEEecc---------------ccccccccccCCcceEEE
Confidence 766543 234567788877777 7777777777411100 111222245677778889
Q ss_pred EECCCC-eEEEEecCCeEEEEeCC-CCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCC-CcceeeeccccC
Q 043350 446 VLTADG-MIWSGCTNGLLVQWDGN-GNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG-NLTASWIAHSSP 520 (1133)
Q Consensus 446 ~~spdg-~L~sgs~DG~I~vWd~~-g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g-~~l~~~~~H~~~ 520 (1133)
.|+|+| ++++|+.|..+.+||++ --|++.+..+..+|.. |+.||++||+||.|..|-|=+++. ..+. -..|.++
T Consensus 196 ~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~-eI~~~~~ 274 (313)
T KOG1407|consen 196 EFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVW-EIPCEGP 274 (313)
T ss_pred EECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEE-EeeccCC
Confidence 999999 99999999999999994 4889999999999998 999999999999999999988874 3322 2357888
Q ss_pred eEEeeec-cccee
Q 043350 521 VLKLAVG-VDHIY 532 (1133)
Q Consensus 521 V~~l~fs-~~~L~ 532 (1133)
-..|+|+ .+.|+
T Consensus 275 t~tVAWHPk~~LL 287 (313)
T KOG1407|consen 275 TFTVAWHPKRPLL 287 (313)
T ss_pred ceeEEecCCCcee
Confidence 9999999 44333
No 102
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.83 E-value=3.3e-19 Score=185.69 Aligned_cols=289 Identities=13% Similarity=0.218 Sum_probs=202.1
Q ss_pred CCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCC--------------CCCCCCeeeeccCCCccccccceEEEEE
Q 043350 98 GPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAV--------------HPGRPPCLELRPHPLKETQAGRFLRNIA 163 (1133)
Q Consensus 98 ~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~--------------~~g~~~~~~l~~H~~~~~~~g~~V~~v~ 163 (1133)
.|..+.-. ..|+|||.++||||.|..|+|.|.+-+ ....|.+.+|-.|.. .|.++.
T Consensus 110 ~HK~~cR~---aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~d-------evn~l~ 179 (430)
T KOG0640|consen 110 SHKSPCRA---AAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVD-------EVNDLD 179 (430)
T ss_pred ecccceee---eeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccC-------ccccee
Confidence 44444434 779999999999999999999996521 223355778888888 999999
Q ss_pred -eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEe
Q 043350 164 -CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWK 240 (1133)
Q Consensus 164 -s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd 240 (1133)
.|..++|+ +.|++|++||+...... + .+..-....+|.|+.|+|.|.+|+.|..-.++++||
T Consensus 180 FHPre~ILiS~srD~tvKlFDfsK~saK-r--------------A~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYd 244 (430)
T KOG0640|consen 180 FHPRETILISGSRDNTVKLFDFSKTSAK-R--------------AFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYD 244 (430)
T ss_pred ecchhheEEeccCCCeEEEEecccHHHH-H--------------HHHHhhccceeeeEeecCCCceEEEecCCCceeEEe
Confidence 99999998 88999999999872110 0 111222345999999999999999999999999999
Q ss_pred CCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCC--CceeeEeCCCCceEEEEeecceEEE
Q 043350 241 MDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWES--IEKSLSLKPEEKHMAALLVERSFID 317 (1133)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~--~~~~l~~~~~~~~l~s~~~d~s~~d 317 (1133)
+.+..+ +-....-.+|++.|++|.+++.|+ .+|||.||.||+||--. ++..+.-..++..+.++
T Consensus 245 v~T~Qc-----fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa-------- 311 (430)
T KOG0640|consen 245 VNTYQC-----FVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSA-------- 311 (430)
T ss_pred ccceeE-----eeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeE--------
Confidence 997333 122223467999999999999999 99999999999999644 23333333333322211
Q ss_pred ccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcc-----eeEEEeCCCCCcccccc
Q 043350 318 LRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHI-----ENRVDTQSVQDQPVEDE 392 (1133)
Q Consensus 318 ~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~-----v~~l~~sp~g~~~~e~e 392 (1133)
....+++++++. +.|..+++|.+.++++++.+.+.+.. -+...|+...++
T Consensus 312 ------------~Ftkn~kyiLsS--------G~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdy----- 366 (430)
T KOG0640|consen 312 ------------VFTKNGKYILSS--------GKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDY----- 366 (430)
T ss_pred ------------EEccCCeEEeec--------CCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccce-----
Confidence 023455566666 89999999999999999999876321 123345544444
Q ss_pred ceEEEEeeCC-CCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC
Q 043350 393 MKVKFVSSNK-KEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG 467 (1133)
Q Consensus 393 ~~v~lasgs~-Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~ 467 (1133)
++.... .+.+..|+.+.... ++.. -.+|++.+..+..||.+ .+++++.|-.+++|-.
T Consensus 367 ----Vl~pDEas~slcsWdaRtadr----------~~l~----slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 367 ----VLFPDEASNSLCSWDARTADR----------VALL----SLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred ----EEccccccCceeeccccchhh----------hhhc----ccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 332222 22222555442110 1111 24788889999999999 9999999999999953
No 103
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=3.7e-19 Score=196.58 Aligned_cols=266 Identities=15% Similarity=0.188 Sum_probs=192.5
Q ss_pred ccccCCC-CCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCC
Q 043350 108 HKPFQPM-VEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLE 183 (1133)
Q Consensus 108 ~~~~~p~-g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~ 183 (1133)
+..|+|. +.-+|++|. -.+.|++.. +..+..++.-... .+.++. ..||.++| ...|.|+|+|+.
T Consensus 31 sl~fsp~~P~d~aVt~S-~rvqly~~~----~~~~~k~~srFk~-------~v~s~~fR~DG~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 31 SLCFSPKHPYDFAVTSS-VRVQLYSSV----TRSVRKTFSRFKD-------VVYSVDFRSDGRLLAAGDESGHVKVFDMK 98 (487)
T ss_pred eEecCCCCCCceEEecc-cEEEEEecc----hhhhhhhHHhhcc-------ceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence 3667773 333555544 356788876 4443444444444 788888 99999999 567999999966
Q ss_pred C--CCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCCccccccccc
Q 043350 184 D--SYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQA 260 (1133)
Q Consensus 184 ~--~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~g 260 (1133)
. ... .+..|..||..+.|+| ++.++++|+.|+.+++||+.+ . .....+.+
T Consensus 99 ~r~iLR-------------------~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~-----a---~v~~~l~~ 151 (487)
T KOG0310|consen 99 SRVILR-------------------QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST-----A---YVQAELSG 151 (487)
T ss_pred cHHHHH-------------------HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC-----c---EEEEEecC
Confidence 5 222 2446778999999999 677889999999999999987 1 22457899
Q ss_pred CCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCC-ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEE
Q 043350 261 HRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESI-EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKC 337 (1133)
Q Consensus 261 H~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~-~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~ 337 (1133)
|++.|.|.+|+|... ++|||+||+||+||.+.. ... ..++...++..++..+++..++
T Consensus 152 htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v-------------------~elnhg~pVe~vl~lpsgs~ia 212 (487)
T KOG0310|consen 152 HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRV-------------------VELNHGCPVESVLALPSGSLIA 212 (487)
T ss_pred CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCcee-------------------EEecCCCceeeEEEcCCCCEEE
Confidence 999999999999866 999999999999999863 222 2333233344445445555444
Q ss_pred EEecCCceEEEecCCCceeEeecCCCc-eeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccce
Q 043350 338 MLSDHARARVWCAQPLSFSLWDARSKE-LLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNA 416 (1133)
Q Consensus 338 l~S~d~~i~vwss~d~~I~lWD~~tg~-~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~ 416 (1133)
.+ +...|++||+.+|. .+..+..|...|+|+.+..++.. |++|+-|+.++.|+....+.
T Consensus 213 sA-----------gGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~r---------LlS~sLD~~VKVfd~t~~Kv 272 (487)
T KOG0310|consen 213 SA-----------GGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTR---------LLSGSLDRHVKVFDTTNYKV 272 (487)
T ss_pred Ec-----------CCCeEEEEEecCCceehhhhhcccceEEEEEeecCCce---------EeecccccceEEEEccceEE
Confidence 44 34789999999665 44455559999999999999988 99999999998655332222
Q ss_pred eeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC
Q 043350 417 IMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG 467 (1133)
Q Consensus 417 ~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~ 467 (1133)
+.++. ..++|.+++.+|++ .++.|..||.+.+-+.
T Consensus 273 -------v~s~~---------~~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 273 -------VHSWK---------YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred -------EEeee---------cccceeeEEecCCCceEEEecccceeeeehh
Confidence 22333 34778899999988 9999999998877644
No 104
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=8.5e-19 Score=192.25 Aligned_cols=282 Identities=17% Similarity=0.263 Sum_probs=204.7
Q ss_pred eeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCc---C------cCCCccccCCCCCCCceee-
Q 043350 142 CLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEP---G------AGIGGRVRRGDEDAAPFYE- 208 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~---~------~gh~~~v~~g~~~~~~~~~- 208 (1133)
...+..|.. .+.+++ +++..+.. +.+++|.-|++...... + +.|. .+...
T Consensus 135 ~~~~~~H~~-------s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~----------~~~k~~ 197 (479)
T KOG0299|consen 135 FRVIGKHQL-------SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHG----------NPLKES 197 (479)
T ss_pred ceeeccccC-------cceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhcc----------CCCCcc
Confidence 456778888 899999 88877776 88999999998764322 1 1122 01111
Q ss_pred -ccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEE
Q 043350 209 -SANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIK 286 (1133)
Q Consensus 209 -~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~ 286 (1133)
..|...+.|++.++|+++||+|+.|..|.||+.++ ...+..+.+|++.|.+++|-..-. |+++|.|++|+
T Consensus 198 r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t--------~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvk 269 (479)
T KOG0299|consen 198 RKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDT--------LEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVK 269 (479)
T ss_pred cccccceeEEEEEcCCCcEEEecCCCceEEEecCcc--------cchhhcccccccceeeeeeecCccceeeeecCCceE
Confidence 37899999999999999999999999999999987 255677999999999999986555 99999999999
Q ss_pred EEeCCC--CceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCc
Q 043350 287 IWPWES--IEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKE 364 (1133)
Q Consensus 287 iWdl~~--~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~ 364 (1133)
+|+++. .+..+..|+++.. .++.- ....++..+ +.|.++++|++. .+
T Consensus 270 vw~~~~~s~vetlyGHqd~v~---------~IdaL-------------~reR~vtVG--------grDrT~rlwKi~-ee 318 (479)
T KOG0299|consen 270 VWSIDQLSYVETLYGHQDGVL---------GIDAL-------------SRERCVTVG--------GRDRTVRLWKIP-EE 318 (479)
T ss_pred EEehhHhHHHHHHhCCcccee---------eechh-------------cccceEEec--------cccceeEEEecc-cc
Confidence 999987 4566667777765 22222 223344444 689999999994 34
Q ss_pred eeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccc---ccccceeeccCCceEEEEEecCCcccCCCCC
Q 043350 365 LLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFL---QRSRNAIMGAADAVRRVATRGAGAFVDDTKR 441 (1133)
Q Consensus 365 ~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~---~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~ 441 (1133)
....|.++...+.+++|-.+. . +++||.+|.|..|. .+++.+.....+ ..|...-..+..+
T Consensus 319 sqlifrg~~~sidcv~~In~~-H---------fvsGSdnG~IaLWs~~KKkplf~~~~AHg------v~~~~~~~~~~~W 382 (479)
T KOG0299|consen 319 SQLIFRGGEGSIDCVAFINDE-H---------FVSGSDNGSIALWSLLKKKPLFTSRLAHG------VIPELDPVNGNFW 382 (479)
T ss_pred ceeeeeCCCCCeeeEEEeccc-c---------eeeccCCceEEEeeecccCceeEeecccc------ccCCccccccccc
Confidence 445677888888899987655 4 78999999998443 222222111100 0111111233468
Q ss_pred EEEEEECCCC-eEEEEecCCeEEEEeC-CC----CeeEEEecCCcceeE--EecCCCEEEEEe
Q 043350 442 TEAMVLTADG-MIWSGCTNGLLVQWDG-NG----NRVSDILHHQCAVQC--FCTYGSRMYVGY 496 (1133)
Q Consensus 442 V~sl~~spdg-~L~sgs~DG~I~vWd~-~g----~~l~~~~~h~~~V~~--fs~dg~~Lasgs 496 (1133)
|++++..|.. ++++|+.+|.|++|-+ +| +++..+. -.+.|++ |+++|+.|++|.
T Consensus 383 itsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 383 ITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred eeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEec
Confidence 9999999998 9999999999999998 44 3444444 3567777 899999877774
No 105
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.83 E-value=6.6e-19 Score=191.29 Aligned_cols=264 Identities=13% Similarity=0.164 Sum_probs=210.5
Q ss_pred CCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcC
Q 043350 113 PMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPG 189 (1133)
Q Consensus 113 p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~ 189 (1133)
|....++||+.|.++.++|.. ....+..+.||.. .|+.+. +++...++ +.|..|+||.......
T Consensus 229 ~s~~~ilTGG~d~~av~~d~~----s~q~l~~~~Gh~k-------ki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-- 295 (506)
T KOG0289|consen 229 PSSSKILTGGEDKTAVLFDKP----SNQILATLKGHTK-------KITSVKFHKDLDTVITASADEIIRVWSVPLSSE-- 295 (506)
T ss_pred CCCCcceecCCCCceEEEecc----hhhhhhhccCcce-------EEEEEEeccchhheeecCCcceEEeeccccccC--
Confidence 334689999999999999987 5555889999999 899998 77776666 9999999999866422
Q ss_pred cCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccC---CCCeE
Q 043350 190 AGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAH---RGPVL 266 (1133)
Q Consensus 190 ~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH---~~~V~ 266 (1133)
+.....|..+|+.+..+|.|.+|++++.||+....|++.+.+ .+...| .-.++
T Consensus 296 ---------------~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~---------lt~vs~~~s~v~~t 351 (506)
T KOG0289|consen 296 ---------------PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ---------LTVVSDETSDVEYT 351 (506)
T ss_pred ---------------ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE---------EEEEeeccccceeE
Confidence 345668899999999999999999999999999999987222 222222 23589
Q ss_pred EEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCce
Q 043350 267 AMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARA 345 (1133)
Q Consensus 267 sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i 345 (1133)
+.+|+|||. |.+|..||.|+|||+..
T Consensus 352 s~~fHpDgLifgtgt~d~~vkiwdlks----------------------------------------------------- 378 (506)
T KOG0289|consen 352 SAAFHPDGLIFGTGTPDGVVKIWDLKS----------------------------------------------------- 378 (506)
T ss_pred EeeEcCCceEEeccCCCceEEEEEcCC-----------------------------------------------------
Confidence 999999999 99999999999999842
Q ss_pred EEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceE
Q 043350 346 RVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVR 425 (1133)
Q Consensus 346 ~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~ 425 (1133)
+..+..|.+|..+|..++|+.+|-+ ++++..|+.|+.|+.|....+..
T Consensus 379 -----------------~~~~a~Fpght~~vk~i~FsENGY~---------Lat~add~~V~lwDLRKl~n~kt------ 426 (506)
T KOG0289|consen 379 -----------------QTNVAKFPGHTGPVKAISFSENGYW---------LATAADDGSVKLWDLRKLKNFKT------ 426 (506)
T ss_pred -----------------ccccccCCCCCCceeEEEeccCceE---------EEEEecCCeEEEEEehhhcccce------
Confidence 2234568889999999999999999 99999999998888775543321
Q ss_pred EEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCCC---CeeEEEecCCcceeE--EecCCCEEEEEecCC
Q 043350 426 RVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGNG---NRVSDILHHQCAVQC--FCTYGSRMYVGYVSG 499 (1133)
Q Consensus 426 ~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g---~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG 499 (1133)
+. ......+.++.|.+.| +|+.++.|=.|++++... .++..+..|.+..++ |....++|++++.|.
T Consensus 427 -~~-------l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~ 498 (506)
T KOG0289|consen 427 -IQ-------LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDA 498 (506)
T ss_pred -ee-------ccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchh
Confidence 11 1223368888899999 999998887787777533 567777778877777 888889999999999
Q ss_pred eEEEEeC
Q 043350 500 YLQILDL 506 (1133)
Q Consensus 500 ~I~vwd~ 506 (1133)
.++++.+
T Consensus 499 ~l~~~a~ 505 (506)
T KOG0289|consen 499 ILRLYAL 505 (506)
T ss_pred heEEeec
Confidence 9998864
No 106
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=99.82 E-value=5.5e-21 Score=198.14 Aligned_cols=183 Identities=28% Similarity=0.448 Sum_probs=118.6
Q ss_pred ccccceeEEEEEEEcCeEEEEEecccccChHHH-----------HHHHHHHHHHHHhCccCCCCCccccccccccccccc
Q 043350 693 AIGNKGGVGLRIRVYDRTICFVNCHLAAHLEAV-----------NRRNADYDHIYRNMVFSRSTSTLNSASAGVSTAVNM 761 (1133)
Q Consensus 693 ~~gnKG~v~~r~~~~~~~~~fvn~Hlaa~~~~~-----------~~Rn~d~~~i~~~~~f~~~~~~~~~~~~~~~~~~~~ 761 (1133)
.|+.||-.-.|++|++..|.|||.||-....++ ..|.+.+.-++.+|.
T Consensus 153 ~~~rkg~~~~r~~I~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~--------------------- 211 (391)
T KOG1976|consen 153 ANQRKGFLLARFRIHGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELD--------------------- 211 (391)
T ss_pred hhhhccccceeEEEcCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHH---------------------
Confidence 478999999999999999999999995444443 345555555555542
Q ss_pred ccccCCcccCCCCCCCCCCCCccEEEEEccCCccccCCCh------------------HHHHHhh---------------
Q 043350 762 MKTSNTTTTLNTEETKPDLAEADMVIFFGDFNYRLFGISY------------------DEARDFV--------------- 808 (1133)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~d~~f~~GDlNyRi~~~~~------------------~~~~~~~--------------- 808 (1133)
..=...|.+|.||||||||+.-+. +++.++|
T Consensus 212 ----------------~~~~~~~~~fVfGdfNfrLds~s~ln~l~a~q~~qtv~~~d~~~vv~~ifr~esd~drkv~l~v 275 (391)
T KOG1976|consen 212 ----------------EEGLRNDAIFVFGDFNFRLDSTSLLNYLAATQLVQTVAKKDEDGVVESIFRVESDGDRKVTLTV 275 (391)
T ss_pred ----------------hhccCceEEEEecccccccchHHHHHHHhcCCccchhhhcccCcceeeEEeecccCCceeEEEe
Confidence 000235789999999999995210 0111111
Q ss_pred ccCChhHhhccchhH--------HHHHcCCcccC-cccccccCCCCccccCCCCCCCCccCCCCcccccccceeeeecCC
Q 043350 809 SQRCFDWLREKDQLR--------AEMKAGKVFQG-MREAIIRFPPTYKFERHRPGLAGYDSGEKKRIPAWCDRIIYRDSR 879 (1133)
Q Consensus 809 ~~~~~~~Ll~~DqL~--------~~~~~~~~f~g-~~E~~i~F~PTYK~~~~~~~~~~yd~s~k~R~PswcDRIL~~~~~ 879 (1133)
+.+.|+ -..||-+. .--++-..|+. +.|..|.|||||.|..+..|...| ++.|+|||||||||..+.
T Consensus 276 Ekk~FD-yfnh~~f~d~~r~~~~~~dkEl~nf~~kl~E~~i~FpPsypysed~~~~E~~---m~TrcPAWcDRILmn~~a 351 (391)
T KOG1976|consen 276 EKKRFD-YFNHDWFFDLGRGMVKRYDKELANFAFKLKEETIFFPPSYPYSEDDSGKEEF---MRTRCPAWCDRILMNDRA 351 (391)
T ss_pred ehhhcc-hhhhHHHHHcCchhhhhcchHHHHHHHHHhheeecCCCCCCCCcCccchHHH---HhccChHhhhhhhcCccH
Confidence 122232 11111111 00012224533 789999999999999876555445 699999999999998876
Q ss_pred CCCCccCCCCCcceeeeeeeeec-cccCCCCCccccceEEEE
Q 043350 880 STPVSECSLECPVVSSILLYDAV-MDVTESDHKPVHCKFHVK 920 (1133)
Q Consensus 880 ~~~~~~~~~~~~~~~~~~~Y~s~-~~~~~SDHkPV~a~f~~~ 920 (1133)
..++.... .|| +.+.|... ++...-|||||...|++-
T Consensus 352 ~eLv~~~e-~e~---~~~~Y~~vg~e~c~GdHKpVfl~~~i~ 389 (391)
T KOG1976|consen 352 NELVKHDE-FEA---SGLYYGLVGEEKCVGDHKPVFLHASIC 389 (391)
T ss_pred HHHhhccc-cCc---ccceecccccccccCCCcceEEEEeec
Confidence 55442111 122 34668776 788999999999998874
No 107
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=4.7e-19 Score=185.86 Aligned_cols=236 Identities=20% Similarity=0.245 Sum_probs=186.9
Q ss_pred ceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc---EEEEeC
Q 043350 205 PFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD---LWSGGE 281 (1133)
Q Consensus 205 ~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~---L~Sgs~ 281 (1133)
.|....|.++++|||. ++.++||||.|-+|+|||+.. ..++..+..|.+.|+++.|.+.-. |+||+.
T Consensus 36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k--------~~qlg~ll~HagsitaL~F~~~~S~shLlS~sd 105 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRK--------RKQLGILLSHAGSITALKFYPPLSKSHLLSGSD 105 (362)
T ss_pred cccccccccceeEEEe--cceeEeccCCCCcEEEEeccc--------hhhhcceeccccceEEEEecCCcchhheeeecC
Confidence 4667789999999999 589999999999999999986 256778889999999999998853 999999
Q ss_pred CCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecC
Q 043350 282 GGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDAR 361 (1133)
Q Consensus 282 DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~ 361 (1133)
||.|.+|+..
T Consensus 106 DG~i~iw~~~---------------------------------------------------------------------- 115 (362)
T KOG0294|consen 106 DGHIIIWRVG---------------------------------------------------------------------- 115 (362)
T ss_pred CCcEEEEEcC----------------------------------------------------------------------
Confidence 9999999873
Q ss_pred CCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCC
Q 043350 362 SKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKR 441 (1133)
Q Consensus 362 tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~ 441 (1133)
..++++.+.+|...|+.++++|.+++ -++-+.|+.++.|+.- .+....+..+. ..
T Consensus 116 ~W~~~~slK~H~~~Vt~lsiHPS~KL---------ALsVg~D~~lr~WNLV-----~Gr~a~v~~L~-----------~~ 170 (362)
T KOG0294|consen 116 SWELLKSLKAHKGQVTDLSIHPSGKL---------ALSVGGDQVLRTWNLV-----RGRVAFVLNLK-----------NK 170 (362)
T ss_pred CeEEeeeecccccccceeEecCCCce---------EEEEcCCceeeeehhh-----cCccceeeccC-----------Cc
Confidence 23566788999999999999999998 8899999999755422 22222222221 11
Q ss_pred EEEEEECCCC-eEEEEecCCeEEEEeCCC-CeeEEEecCCcceeE-EecCCCEEEEEecCCeEEEEeCC-CCcceeeecc
Q 043350 442 TEAMVLTADG-MIWSGCTNGLLVQWDGNG-NRVSDILHHQCAVQC-FCTYGSRMYVGYVSGYLQILDLD-GNLTASWIAH 517 (1133)
Q Consensus 442 V~sl~~spdg-~L~sgs~DG~I~vWd~~g-~~l~~~~~h~~~V~~-fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~H 517 (1133)
...+.|+|.| +++.+..+ .|-+|.+.. .....+.. ...+.| -.-++.+|++|..|+.|.+||.+ ..++..+.+|
T Consensus 171 at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH 248 (362)
T KOG0294|consen 171 ATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN-PKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAH 248 (362)
T ss_pred ceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc-cccceeeeecCCceEEEecCCceEEEeccCCCccceeeecc
Confidence 2337788999 77777765 588998854 44433332 355666 55678899999999999999998 6788999999
Q ss_pred ccCeEEeeec----ccceeeecccCCeeeccccC
Q 043350 518 SSPVLKLAVG----VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 518 ~~~V~~l~fs----~~~L~S~s~Dg~I~lW~l~s 547 (1133)
...|.++.+- +.+|+|+|.||.|++||+.-
T Consensus 249 ~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 249 ENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred hhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 9999999965 57999999999999999754
No 108
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.82 E-value=1.8e-18 Score=197.40 Aligned_cols=407 Identities=10% Similarity=0.060 Sum_probs=257.4
Q ss_pred CCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCC--------------CCCC---Ceee----------eccCCC
Q 043350 98 GPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVH--------------PGRP---PCLE----------LRPHPL 150 (1133)
Q Consensus 98 ~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~--------------~g~~---~~~~----------l~~H~~ 150 (1133)
||..-+-+..+..+.-+.-+|||+|+|..||||.+.... +..+ ...+ +.||..
T Consensus 189 GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD 268 (764)
T KOG1063|consen 189 GHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED 268 (764)
T ss_pred ccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc
Confidence 565554443333333344589999999999999853211 0111 0111 348999
Q ss_pred ccccccceEEEEE-eCCC-CeEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEE
Q 043350 151 KETQAGRFLRNIA-CTDT-QLWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLV 227 (1133)
Q Consensus 151 ~~~~~g~~V~~v~-s~dg-~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~L 227 (1133)
+|.++. .|.+ .+|+ +.|.++.+|..+.....+... ++-| ...+.........|+|+++.+
T Consensus 269 -------WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~---vRlG-------e~gg~a~GF~g~lw~~n~~~i 331 (764)
T KOG1063|consen 269 -------WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDV---VRLG-------EVGGSAGGFWGGLWSPNSNVI 331 (764)
T ss_pred -------ceEEEEEccchhhheecccCcceEEEecCCccceEEEE---EEee-------cccccccceeeEEEcCCCCEE
Confidence 999999 8888 6777 999999999977642222100 0001 112334567888999999999
Q ss_pred EEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCC--------------
Q 043350 228 WTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWES-------------- 292 (1133)
Q Consensus 228 aSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~-------------- 292 (1133)
++-+.-|-.++|.... ...+.+...+.||.+.|++|+|.|.|. |+|+|.|.|-|++-.-.
T Consensus 332 i~~g~~Gg~hlWkt~d-----~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiH 406 (764)
T KOG1063|consen 332 IAHGRTGGFHLWKTKD-----KTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIH 406 (764)
T ss_pred EEecccCcEEEEeccC-----ccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccc
Confidence 9999999999999332 223455667899999999999999999 99999999999975441
Q ss_pred --CceeeEeCCCCceEEEEeecceEEEccCcee----eecccc---C-----CCC-CeEEEEecCCceEEEecCCCce--
Q 043350 293 --IEKSLSLKPEEKHMAALLVERSFIDLRAQVT----VNGACS---I-----SST-EIKCMLSDHARARVWCAQPLSF-- 355 (1133)
Q Consensus 293 --~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~----v~~~~~---~-----~~~-~~~~l~S~d~~i~vwss~d~~I-- 355 (1133)
...++.+-+....++++..++.+-.++.... +..++. . +.+ .+..+.-.+.-...-...+|..
T Consensus 407 GyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~ 486 (764)
T KOG1063|consen 407 GYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAA 486 (764)
T ss_pred cccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccc
Confidence 0344555554455555555554333332221 001111 0 000 0000000000000000001111
Q ss_pred ------------eEeecCCCc---------eeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccccccc
Q 043350 356 ------------SLWDARSKE---------LLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSR 414 (1133)
Q Consensus 356 ------------~lWD~~tg~---------~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~ 414 (1133)
.+....+.. .++.+.+|+..|.+++.+|++++ +|++++......---
T Consensus 487 ~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnl---------iASaCKS~~~ehAvI--- 554 (764)
T KOG1063|consen 487 VCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNL---------IASACKSSLKEHAVI--- 554 (764)
T ss_pred eeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCE---------EeehhhhCCccceEE---
Confidence 011111111 12345789999999999999999 999988876630000
Q ss_pred ceeeccCCceEEE-EEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCC-C----CeeEEEecCCcceeE--E
Q 043350 415 NAIMGAADAVRRV-ATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGN-G----NRVSDILHHQCAVQC--F 485 (1133)
Q Consensus 415 ~~~~~~~~~V~~v-~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~-g----~~l~~~~~h~~~V~~--f 485 (1133)
.++.. .+.....+.+|.-.|+.++||||| +|++.+.|.++.+|... + ......+.|+.-|+. |
T Consensus 555 --------~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW 626 (764)
T KOG1063|consen 555 --------RLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSW 626 (764)
T ss_pred --------EEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEccc
Confidence 01111 112223366788889999999999 99999999999999872 2 223346779999987 9
Q ss_pred ecCCCEEEEEecCCeEEEEeCCCC---cce--eeeccccCeEEeeec-------ccceeeecccCCeeecccc
Q 043350 486 CTYGSRMYVGYVSGYLQILDLDGN---LTA--SWIAHSSPVLKLAVG-------VDHIYSLAAHGGIRGWTFT 546 (1133)
Q Consensus 486 s~dg~~Lasgs~DG~I~vwd~~g~---~l~--~~~~H~~~V~~l~fs-------~~~L~S~s~Dg~I~lW~l~ 546 (1133)
+|++.++|++|.|.+|+||..... .+. ....++.+|+++++. +..++.|=..|.|.+|...
T Consensus 627 ~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 627 SPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred CcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 999999999999999999998643 222 345689999999987 2245556678899999854
No 109
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=4e-19 Score=180.25 Aligned_cols=243 Identities=15% Similarity=0.158 Sum_probs=175.4
Q ss_pred CcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE--eC-CCCeEE--ecCCcEEEe
Q 043350 106 QQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA--CT-DTQLWA--GQECGVRFW 180 (1133)
Q Consensus 106 ~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~--s~-dg~lla--s~Dg~VrvW 180 (1133)
++....+-.|..|||+|.|++|||+......+..+ +.+|++|.+ +|+-++ .| -|.+|| +.||.|.||
T Consensus 14 IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~l-l~~L~Gh~G-------PVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 14 IHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKL-LAELTGHSG-------PVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhHhhhhhhcceeeeecCCccEEEEEEcCCCCcee-eeEecCCCC-------CeeEEeecccccCcEeeEeecCceEEEE
Confidence 33355567799999999999999998765333345 899999999 999999 44 789999 899999999
Q ss_pred eCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC--CCCEEEEEeCCCeEEEEeCCCCCCCCCCCccccccc
Q 043350 181 NLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC--GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSW 258 (1133)
Q Consensus 181 dl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp--d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l 258 (1133)
.-++. .+ ...+....|.+.|+|++|.| -|-+|++|+.||.|.|.+.+... ........
T Consensus 86 ke~~g--~w-------------~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g-----~w~t~ki~ 145 (299)
T KOG1332|consen 86 KEENG--RW-------------TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG-----GWTTSKIV 145 (299)
T ss_pred ecCCC--ch-------------hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC-----Cccchhhh
Confidence 97764 11 11334668999999999999 47789999999999999988631 12334467
Q ss_pred ccCCCCeEEEEEeeC---C-----------c-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCcee
Q 043350 259 QAHRGPVLAMIFSSQ---G-----------D-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVT 323 (1133)
Q Consensus 259 ~gH~~~V~sl~fsp~---g-----------~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~ 323 (1133)
.+|.-.|++++|.|- | + |+||+.|..|+||+.+
T Consensus 146 ~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~-------------------------------- 193 (299)
T KOG1332|consen 146 FAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFD-------------------------------- 193 (299)
T ss_pred hccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecC--------------------------------
Confidence 899999999999986 3 2 5555555555555543
Q ss_pred eeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCC--ceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeC
Q 043350 324 VNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSK--ELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSN 401 (1133)
Q Consensus 324 v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg--~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs 401 (1133)
++ ..-++|.+|.+.|..+++.|.-.+
T Consensus 194 --------------------------------------~~~w~~e~~l~~H~dwVRDVAwaP~~gl-------------- 221 (299)
T KOG1332|consen 194 --------------------------------------SDSWKLERTLEGHKDWVRDVAWAPSVGL-------------- 221 (299)
T ss_pred --------------------------------------CcchhhhhhhhhcchhhhhhhhccccCC--------------
Confidence 22 122346777777777777775433
Q ss_pred CCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeCCC--Ce--eEEEec
Q 043350 402 KKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGNG--NR--VSDILH 477 (1133)
Q Consensus 402 ~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~g--~~--l~~~~~ 477 (1133)
|..+|++++.||++.||..+. .. ..-+..
T Consensus 222 -----------------------------------------------~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~ 254 (299)
T KOG1332|consen 222 -----------------------------------------------PKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE 254 (299)
T ss_pred -----------------------------------------------CceeeEEecCCCcEEEEEecCccCccccccccc
Confidence 111578888888888887632 11 111122
Q ss_pred CCcceeE--EecCCCEEEEEecCCeEEEEeCC
Q 043350 478 HQCAVQC--FCTYGSRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 478 h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~ 507 (1133)
-...++. ||..|..|++++.|..|.+|.-.
T Consensus 255 f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 255 FPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred CCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 2445555 89999999999999999999744
No 110
>PTZ00421 coronin; Provisional
Probab=99.81 E-value=4.5e-18 Score=202.71 Aligned_cols=252 Identities=12% Similarity=0.097 Sum_probs=182.8
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCC-----CCCCcccccccccCCCCeEEEEEee-CCc-EEEEeCC
Q 043350 210 ANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDD-----ANNPFKEGLSWQAHRGPVLAMIFSS-QGD-LWSGGEG 282 (1133)
Q Consensus 210 ~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~-----~~~~~~~~~~l~gH~~~V~sl~fsp-~g~-L~Sgs~D 282 (1133)
.+...|.+...++++..+++++.+.....|+..++... ..........+.+|.+.|++++|+| +++ |+|||.|
T Consensus 18 ~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D 97 (493)
T PTZ00421 18 RHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED 97 (493)
T ss_pred cceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence 34556677777778777888888888888886543210 0000011234789999999999999 677 9999999
Q ss_pred CcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCC
Q 043350 283 GVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARS 362 (1133)
Q Consensus 283 gtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~t 362 (1133)
++|++||+..... . . ..
T Consensus 98 gtIkIWdi~~~~~---------~-----------------------------------~-------------------~~ 114 (493)
T PTZ00421 98 GTIMGWGIPEEGL---------T-----------------------------------Q-------------------NI 114 (493)
T ss_pred CEEEEEecCCCcc---------c-----------------------------------c-------------------cc
Confidence 9999999853100 0 0 11
Q ss_pred CceeEEEecCCcceeEEEeCCCC-CccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCC
Q 043350 363 KELLKVFNIEGHIENRVDTQSVQ-DQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKR 441 (1133)
Q Consensus 363 g~~l~~~~~h~~~v~~l~~sp~g-~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~ 441 (1133)
.+++..+.+|...|.+++|+|++ .+ |++|+.|++|+.|+...... + ..+.+|...
T Consensus 115 ~~~l~~L~gH~~~V~~l~f~P~~~~i---------LaSgs~DgtVrIWDl~tg~~-------~--------~~l~~h~~~ 170 (493)
T PTZ00421 115 SDPIVHLQGHTKKVGIVSFHPSAMNV---------LASAGADMVVNVWDVERGKA-------V--------EVIKCHSDQ 170 (493)
T ss_pred CcceEEecCCCCcEEEEEeCcCCCCE---------EEEEeCCCEEEEEECCCCeE-------E--------EEEcCCCCc
Confidence 23456778899999999999975 57 99999999998776542211 0 013467788
Q ss_pred EEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCccee--E-EecCCCEEEEEe----cCCeEEEEeCCC--Cc
Q 043350 442 TEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQ--C-FCTYGSRMYVGY----VSGYLQILDLDG--NL 510 (1133)
Q Consensus 442 V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~--~-fs~dg~~Lasgs----~DG~I~vwd~~g--~~ 510 (1133)
|.+++|+|+| .|++|+.||+|++||. +++.+.++..|...+. + |.+++..|++++ .|+.|++||+.. ++
T Consensus 171 V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p 250 (493)
T PTZ00421 171 ITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASP 250 (493)
T ss_pred eEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCc
Confidence 9999999999 9999999999999999 6788888888876543 3 888888777654 489999999973 34
Q ss_pred ceeeeccc-cCeEEeeec--ccceeeec-ccCCeeeccccCC
Q 043350 511 TASWIAHS-SPVLKLAVG--VDHIYSLA-AHGGIRGWTFTSP 548 (1133)
Q Consensus 511 l~~~~~H~-~~V~~l~fs--~~~L~S~s-~Dg~I~lW~l~s~ 548 (1133)
+.....|. ..+....|+ +.+|++++ .|+.|++|++...
T Consensus 251 ~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 251 YSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred eeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 44444443 344455566 77788877 5999999998764
No 111
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.80 E-value=4.3e-18 Score=185.02 Aligned_cols=272 Identities=15% Similarity=0.145 Sum_probs=211.4
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeC
Q 043350 212 TSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPW 290 (1133)
Q Consensus 212 ~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl 290 (1133)
...++++...|....++||+.|.++.++|...+ +.+..+.||...|+++.|+|+.. ++++|.|..|+||..
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~--------q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~ 290 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSN--------QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSV 290 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchh--------hhhhhccCcceEEEEEEeccchhheeecCCcceEEeecc
Confidence 446788888887788999999999999998751 55778999999999999999998 999999999999998
Q ss_pred CCCc--eeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEE
Q 043350 291 ESIE--KSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKV 368 (1133)
Q Consensus 291 ~~~~--~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~ 368 (1133)
.... .....+... +..+..++.++.. ++. +.|++....|+++|..+..
T Consensus 291 ~~~s~~~~~~~h~~~--------------------V~~ls~h~tgeYl--lsA--------s~d~~w~Fsd~~~g~~lt~ 340 (506)
T KOG0289|consen 291 PLSSEPTSSRPHEEP--------------------VTGLSLHPTGEYL--LSA--------SNDGTWAFSDISSGSQLTV 340 (506)
T ss_pred ccccCcccccccccc--------------------ceeeeeccCCcEE--EEe--------cCCceEEEEEccCCcEEEE
Confidence 6521 111112111 2222233444433 333 6688888999999998887
Q ss_pred EecCCc--ceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEE
Q 043350 369 FNIEGH--IENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMV 446 (1133)
Q Consensus 369 ~~~h~~--~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~ 446 (1133)
...... .+++.+|+|||-+ |.+|..|+.++.|+.+..... ..|.+|.++|.+++
T Consensus 341 vs~~~s~v~~ts~~fHpDgLi---------fgtgt~d~~vkiwdlks~~~~---------------a~Fpght~~vk~i~ 396 (506)
T KOG0289|consen 341 VSDETSDVEYTSAAFHPDGLI---------FGTGTPDGVVKIWDLKSQTNV---------------AKFPGHTGPVKAIS 396 (506)
T ss_pred EeeccccceeEEeeEcCCceE---------EeccCCCceEEEEEcCCcccc---------------ccCCCCCCceeEEE
Confidence 765432 4789999999999 999999999987776543321 23678999999999
Q ss_pred ECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCC-cceeE--EecCCCEEEEEecCCeEEEEeCCC---Ccceeeeccc
Q 043350 447 LTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQ-CAVQC--FCTYGSRMYVGYVSGYLQILDLDG---NLTASWIAHS 518 (1133)
Q Consensus 447 ~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~-~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g---~~l~~~~~H~ 518 (1133)
|+.+| +|+++++|+.|++||+ .-+.++++.... ..|.+ |...|.+|++++.|=+|++++-.. ..+..+.-|+
T Consensus 397 FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~s 476 (506)
T KOG0289|consen 397 FSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHS 476 (506)
T ss_pred eccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcc
Confidence 99999 9999999999999999 445666665432 24555 899999999999998888888543 4566777899
Q ss_pred cCeEEeeec--ccceeeecccCCeeeccc
Q 043350 519 SPVLKLAVG--VDHIYSLAAHGGIRGWTF 545 (1133)
Q Consensus 519 ~~V~~l~fs--~~~L~S~s~Dg~I~lW~l 545 (1133)
+..+.+.|. .++++++|.|..+++..+
T Consensus 477 g~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 477 GLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cccceeeecccceEEeeccchhheEEeec
Confidence 999999999 899999999999888754
No 112
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.80 E-value=7.9e-18 Score=172.89 Aligned_cols=290 Identities=14% Similarity=0.165 Sum_probs=209.8
Q ss_pred cccCCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--
Q 043350 95 VCPGPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA-- 171 (1133)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla-- 171 (1133)
...||+.|.+. +.|.-+|.+|.+++.|.+..+|-... |.. +-++.+|.+ .|+++. .-+...++
T Consensus 5 ~l~GHERplTq---iKyN~eGDLlFscaKD~~~~vw~s~n---Ger-lGty~GHtG-------avW~~Did~~s~~liTG 70 (327)
T KOG0643|consen 5 LLQGHERPLTQ---IKYNREGDLLFSCAKDSTPTVWYSLN---GER-LGTYDGHTG-------AVWCCDIDWDSKHLITG 70 (327)
T ss_pred ccccCccccce---EEecCCCcEEEEecCCCCceEEEecC---Cce-eeeecCCCc-------eEEEEEecCCcceeeec
Confidence 34589999888 88899999999999999999996532 776 899999999 999999 55555555
Q ss_pred ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeC-----CCeEEEEeCCCCCC
Q 043350 172 GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHK-----DGKIRSWKMDQTLD 246 (1133)
Q Consensus 172 s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~-----Dg~V~vWd~~~~~~ 246 (1133)
+.|.++++||+.+..... .+ --..+|..+.|+++|++++.... .+.|.++|++....
T Consensus 71 SAD~t~kLWDv~tGk~la-----------------~~-k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~ 132 (327)
T KOG0643|consen 71 SADQTAKLWDVETGKQLA-----------------TW-KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSS 132 (327)
T ss_pred cccceeEEEEcCCCcEEE-----------------Ee-ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChh
Confidence 999999999998743321 11 22458999999999998777654 36799999974321
Q ss_pred CCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeE---eCCCCceEEEEeecceEEEccCce
Q 043350 247 DANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLS---LKPEEKHMAALLVERSFIDLRAQV 322 (1133)
Q Consensus 247 ~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~---~~~~~~~l~s~~~d~s~~d~~~~~ 322 (1133)
. ...-.+...+..+...++.+-|.|-++ |++|.+||.|.+||++++...+. .|... +-++.
T Consensus 133 ~-~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~-----------Ind~q--- 197 (327)
T KOG0643|consen 133 D-IDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSK-----------INDLQ--- 197 (327)
T ss_pred h-hcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccc-----------ccccc---
Confidence 0 001144667778889999999999999 99999999999999987433221 11111 12222
Q ss_pred eeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCC
Q 043350 323 TVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNK 402 (1133)
Q Consensus 323 ~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~ 402 (1133)
++++..+++.+ +.|.+-++||.++-++++++.. ..+|++.+++|..+. ++.|+.
T Consensus 198 --------~s~d~T~FiT~--------s~Dttakl~D~~tl~v~Kty~t-e~PvN~aaisP~~d~---------VilgGG 251 (327)
T KOG0643|consen 198 --------FSRDRTYFITG--------SKDTTAKLVDVRTLEVLKTYTT-ERPVNTAAISPLLDH---------VILGGG 251 (327)
T ss_pred --------ccCCcceEEec--------ccCccceeeeccceeeEEEeee-cccccceecccccce---------EEecCC
Confidence 44556666666 8899999999999999999975 457999999998776 555443
Q ss_pred -CCccc--------cccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC
Q 043350 403 -KEKPH--------GFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG 467 (1133)
Q Consensus 403 -Dg~i~--------~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~ 467 (1133)
+-.-. .|..+-...+.. . .-|...+|-++|++++|+|+| ..++|++||.|++.-.
T Consensus 252 qeA~dVTTT~~r~GKFEArFyh~i~e--E--------EigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 252 QEAMDVTTTSTRAGKFEARFYHLIFE--E--------EIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred ceeeeeeeecccccchhhhHHHHHHH--H--------HhccccccccCcceeEECCCCcccccCCCCceEEEEEe
Confidence 21110 011111110000 0 013367899999999999999 8899999999998755
No 113
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.80 E-value=6.3e-18 Score=192.14 Aligned_cols=331 Identities=14% Similarity=0.151 Sum_probs=221.8
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCC-CCCCCCeeeeccCCCccccccceEEEEE-e------------CCCCeEE-ec
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAV-HPGRPPCLELRPHPLKETQAGRFLRNIA-C------------TDTQLWA-GQ 173 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~-~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s------------~dg~lla-s~ 173 (1133)
..|+|..+.|..--.|+.+.|||.... .+|+ +..+-.|.. -||.|. - |.+-++. +.
T Consensus 330 ~~Fdet~~klscVYndhSlYvWDvrD~~kvgk--~~s~lyHS~-------ciW~Ve~~p~nv~~~~~aclp~~cF~TCSs 400 (1080)
T KOG1408|consen 330 CQFDETTDKLSCVYNDHSLYVWDVRDVNKVGK--CSSMLYHSA-------CIWDVENLPCNVHSPTAACLPRGCFTTCSS 400 (1080)
T ss_pred EEecCCCceEEEEEcCceEEEEeccccccccc--eeeeeeccc-------eeeeeccccccccCcccccCCccceeEecC
Confidence 468999999999999999999996532 2233 334445766 677766 2 3455555 99
Q ss_pred CCcEEEeeCCCCCCc-------CcCCCccccCCCC-------------CCCceeeccCCCCeEEEEEeCCCCEEEEEeCC
Q 043350 174 ECGVRFWNLEDSYEP-------GAGIGGRVRRGDE-------------DAAPFYESANTSPTMCLMVDCGNRLVWTGHKD 233 (1133)
Q Consensus 174 Dg~VrvWdl~~~~~~-------~~gh~~~v~~g~~-------------~~~~~~~~~h~s~V~~la~spd~~~LaSgs~D 233 (1133)
|++||+|+++..... +...-..+.-.+. +.+....-...-.+.|++.+|+++.||+|..-
T Consensus 401 D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~ 480 (1080)
T KOG1408|consen 401 DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG 480 (1080)
T ss_pred CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCcc
Confidence 999999999862110 0000000000000 00000111123469999999999999999999
Q ss_pred CeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeC--Cc--EEEEeCCCcEEEEeCCCC---ceeeEeCCCCceE
Q 043350 234 GKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQ--GD--LWSGGEGGVIKIWPWESI---EKSLSLKPEEKHM 306 (1133)
Q Consensus 234 g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~--g~--L~Sgs~DgtI~iWdl~~~---~~~l~~~~~~~~l 306 (1133)
|+++|+++.. ......+.+|...|.|+.|+-. +. |+|+|.|..|.|+|+... ...+..|.....
T Consensus 481 GnlrVy~Lq~--------l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssIT- 551 (1080)
T KOG1408|consen 481 GNLRVYDLQE--------LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSIT- 551 (1080)
T ss_pred CceEEEEehh--------hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccccccee-
Confidence 9999999985 3556688999999999999854 33 999999999999998652 222222222221
Q ss_pred EEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecC-----CcceeEEEe
Q 043350 307 AALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIE-----GHIENRVDT 381 (1133)
Q Consensus 307 ~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h-----~~~v~~l~~ 381 (1133)
.+.+. -.+-..-++++ +.|..|..--.+...-...|..| ...+..++.
T Consensus 552 --------svKFa-----------~~gln~~Misc--------GADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~V 604 (1080)
T KOG1408|consen 552 --------SVKFA-----------CNGLNRKMISC--------GADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAV 604 (1080)
T ss_pred --------EEEEe-----------ecCCceEEEec--------cCchhhheehhccccCceeccccccccccceEEEeee
Confidence 11111 11111222222 45555433222211111222222 234678999
Q ss_pred CCCCCccccccceEEEEeeCCCCcccccccc---ccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEe
Q 043350 382 QSVQDQPVEDEMKVKFVSSNKKEKPHGFLQR---SRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGC 457 (1133)
Q Consensus 382 sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~---~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs 457 (1133)
.|...+ +++++.|..|+.|+.. ..+.+++ -.+|.+....+...|.| +|++.+
T Consensus 605 dp~~k~---------v~t~cQDrnirif~i~sgKq~k~FKg---------------s~~~eG~lIKv~lDPSgiY~atSc 660 (1080)
T KOG1408|consen 605 DPTSKL---------VVTVCQDRNIRIFDIESGKQVKSFKG---------------SRDHEGDLIKVILDPSGIYLATSC 660 (1080)
T ss_pred CCCcce---------EEEEecccceEEEeccccceeeeecc---------------cccCCCceEEEEECCCccEEEEee
Confidence 999999 9999999999855433 2222222 13566667778889999 999999
Q ss_pred cCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCC
Q 043350 458 TNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 458 ~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g 508 (1133)
.|.++.++|. .|+|+.++.+|...|+. |.+|-+.|++.+.||.|.||.+.-
T Consensus 661 sdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 661 SDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 9999999999 89999999999999999 999999999999999999999864
No 114
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=4.2e-18 Score=195.80 Aligned_cols=259 Identities=16% Similarity=0.220 Sum_probs=201.9
Q ss_pred CCCeEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q 043350 166 DTQLWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQT 244 (1133)
Q Consensus 166 dg~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~ 244 (1133)
....+| +.+..|.+|+.....-. .....+...|+++.|+++|.+||+|..+|.|.|||...
T Consensus 187 s~n~laValg~~vylW~~~s~~v~-----------------~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~- 248 (484)
T KOG0305|consen 187 SANVLAVALGQSVYLWSASSGSVT-----------------ELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE- 248 (484)
T ss_pred cCCeEEEEecceEEEEecCCCceE-----------------EeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhh-
Confidence 444666 88889999997663211 01112256899999999999999999999999999875
Q ss_pred CCCCCCCccccccccc-CCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCce
Q 043350 245 LDDANNPFKEGLSWQA-HRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQV 322 (1133)
Q Consensus 245 ~~~~~~~~~~~~~l~g-H~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~ 322 (1133)
.+.+..+.+ |...|-+++|. +. +.+|+.|+.|..+|++...
T Consensus 249 -------~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~---------------------------- 291 (484)
T KOG0305|consen 249 -------QKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQ---------------------------- 291 (484)
T ss_pred -------ccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecch----------------------------
Confidence 144556777 99999999998 45 9999999999999885310
Q ss_pred eeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCC
Q 043350 323 TVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNK 402 (1133)
Q Consensus 323 ~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~ 402 (1133)
....++.+|.+.|..+.|++++.+ +|+|+.
T Consensus 292 -----------------------------------------~~~~~~~~H~qeVCgLkws~d~~~---------lASGgn 321 (484)
T KOG0305|consen 292 -----------------------------------------HVVSTLQGHRQEVCGLKWSPDGNQ---------LASGGN 321 (484)
T ss_pred -----------------------------------------hhhhhhhcccceeeeeEECCCCCe---------eccCCC
Confidence 011126789999999999999999 999999
Q ss_pred CCcccccccc---ccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC--eEEEEe--cCCeEEEEeC-CCCeeEE
Q 043350 403 KEKPHGFLQR---SRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG--MIWSGC--TNGLLVQWDG-NGNRVSD 474 (1133)
Q Consensus 403 Dg~i~~~~~~---~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg--~L~sgs--~DG~I~vWd~-~g~~l~~ 474 (1133)
|+.+..|+.. .... +..|...|.+++|+|-. .||+|+ .|++|++||. .|.++..
T Consensus 322 DN~~~Iwd~~~~~p~~~------------------~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~ 383 (484)
T KOG0305|consen 322 DNVVFIWDGLSPEPKFT------------------FTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS 383 (484)
T ss_pred ccceEeccCCCccccEE------------------EeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc
Confidence 9999877662 2222 34566666666666654 888875 6999999999 6677777
Q ss_pred EecCCcceeE--EecCCCEEEE--EecCCeEEEEeCCC-CcceeeeccccCeEEeeec--ccceeeecccCCeeeccccC
Q 043350 475 ILHHQCAVQC--FCTYGSRMYV--GYVSGYLQILDLDG-NLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 475 ~~~h~~~V~~--fs~dg~~Las--gs~DG~I~vwd~~g-~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s 547 (1133)
+.. .+.|+. |++..+-|++ |..++.|.||+... +++..+.+|...|..++++ +..|++++.|.++++|++-.
T Consensus 384 vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 384 VDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred ccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 765 345666 8888865554 44788999999875 6788999999999999999 89999999999999999866
Q ss_pred C
Q 043350 548 P 548 (1133)
Q Consensus 548 ~ 548 (1133)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 4
No 115
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.80 E-value=6.4e-18 Score=176.45 Aligned_cols=256 Identities=16% Similarity=0.227 Sum_probs=179.8
Q ss_pred CCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEe
Q 043350 212 TSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWP 289 (1133)
Q Consensus 212 ~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWd 289 (1133)
...|.+|+||| ...+++.||+||+||+|+++.... ........|.++|.+++|+.+|. +++|+.|+.+++||
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~------~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ------LVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCc------ccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence 44699999999 677788999999999999986211 22246678999999999999999 99999999999999
Q ss_pred CCCC-ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEE
Q 043350 290 WESI-EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKV 368 (1133)
Q Consensus 290 l~~~-~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~ 368 (1133)
+.+. ...+..|..... .+.........+++.+ +.|.+|+.||+|...++.+
T Consensus 101 L~S~Q~~~v~~Hd~pvk--------------------t~~wv~~~~~~cl~TG--------SWDKTlKfWD~R~~~pv~t 152 (347)
T KOG0647|consen 101 LASGQVSQVAAHDAPVK--------------------TCHWVPGMNYQCLVTG--------SWDKTLKFWDTRSSNPVAT 152 (347)
T ss_pred ccCCCeeeeeeccccee--------------------EEEEecCCCcceeEec--------ccccceeecccCCCCeeee
Confidence 9873 444555544443 1112233345678888 9999999999999998888
Q ss_pred EecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccc-cccceeeccCCceEEEEEecCCcccCCCCCEEEEEE
Q 043350 369 FNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQ-RSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVL 447 (1133)
Q Consensus 369 ~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~-~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~ 447 (1133)
+.... .+.+++. ...+ ++.+..+..|..+.. .....+..+..+ ..-.+.+++.
T Consensus 153 ~~LPe-RvYa~Dv--~~pm---------~vVata~r~i~vynL~n~~te~k~~~Sp--------------Lk~Q~R~va~ 206 (347)
T KOG0647|consen 153 LQLPE-RVYAADV--LYPM---------AVVATAERHIAVYNLENPPTEFKRIESP--------------LKWQTRCVAC 206 (347)
T ss_pred eeccc-eeeehhc--cCce---------eEEEecCCcEEEEEcCCCcchhhhhcCc--------------ccceeeEEEE
Confidence 76543 2333222 2223 555666665542221 111111111111 1223667777
Q ss_pred CCCC-eEEEEecCCeEEEEeC-CC--CeeEEEecCCc---------ceeE--EecCCCEEEEEecCCeEEEEeCCC-Ccc
Q 043350 448 TADG-MIWSGCTNGLLVQWDG-NG--NRVSDILHHQC---------AVQC--FCTYGSRMYVGYVSGYLQILDLDG-NLT 511 (1133)
Q Consensus 448 spdg-~L~sgs~DG~I~vWd~-~g--~~l~~~~~h~~---------~V~~--fs~dg~~Lasgs~DG~I~vwd~~g-~~l 511 (1133)
..|. ..+.|+..|.+-+..+ .+ +.-.+|+.|.. +|++ |.|.-..|++++.||++.+||-+. ..+
T Consensus 207 f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kL 286 (347)
T KOG0647|consen 207 FQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKL 286 (347)
T ss_pred EecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhh
Confidence 7777 6799999999999988 33 33345666652 3333 999999999999999999999874 456
Q ss_pred eeeeccccCeEEeeec
Q 043350 512 ASWIAHSSPVLKLAVG 527 (1133)
Q Consensus 512 ~~~~~H~~~V~~l~fs 527 (1133)
++...|..+|++..|+
T Consensus 287 k~s~~~~qpItcc~fn 302 (347)
T KOG0647|consen 287 KTSETHPQPITCCSFN 302 (347)
T ss_pred hccCcCCCccceeEec
Confidence 7788999999999998
No 116
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=9.2e-18 Score=176.26 Aligned_cols=265 Identities=12% Similarity=0.142 Sum_probs=182.0
Q ss_pred eEEEEE-eC-CCCeEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCC
Q 043350 158 FLRNIA-CT-DTQLWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDG 234 (1133)
Q Consensus 158 ~V~~v~-s~-dg~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg 234 (1133)
.|.+|. ++ .+.+|+ +-||++++|++...... ..-.|..|+++++|.+ ...+++|+.||
T Consensus 15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~------------------~~~~~~~plL~c~F~d-~~~~~~G~~dg 75 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK------------------LKFKHGAPLLDCAFAD-ESTIVTGGLDG 75 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh------------------hheecCCceeeeeccC-CceEEEeccCc
Confidence 688888 55 455666 99999999999873111 1224677999999997 55789999999
Q ss_pred eEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecc
Q 043350 235 KIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVER 313 (1133)
Q Consensus 235 ~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~ 313 (1133)
.|+.+|+.+ .....+..|..+|.||.+++... ++|||+|++|++||.+.......+...+ .
T Consensus 76 ~vr~~Dln~---------~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-k-------- 137 (323)
T KOG1036|consen 76 QVRRYDLNT---------GNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-K-------- 137 (323)
T ss_pred eEEEEEecC---------CcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc-e--------
Confidence 999999998 44557788999999999997656 9999999999999998632222222111 1
Q ss_pred eEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEe--cCCcceeEEEeCCCCCccccc
Q 043350 314 SFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFN--IEGHIENRVDTQSVQDQPVED 391 (1133)
Q Consensus 314 s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~--~h~~~v~~l~~sp~g~~~~e~ 391 (1133)
+..+. ..++.+++ ...+..+.+||+++-....... .-.-.+.++++-|++.-
T Consensus 138 -Vy~~~-----------v~g~~LvV----------g~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eG---- 191 (323)
T KOG1036|consen 138 -VYCMD-----------VSGNRLVV----------GTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEG---- 191 (323)
T ss_pred -EEEEe-----------ccCCEEEE----------eecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCc----
Confidence 11111 11222222 2568899999999654332111 12234779999998777
Q ss_pred cceEEEEeeCCCCccc--cccccccceeeccCCceEEEEEecCCccc---CCCCCEEEEEECCCC-eEEEEecCCeEEEE
Q 043350 392 EMKVKFVSSNKKEKPH--GFLQRSRNAIMGAADAVRRVATRGAGAFV---DDTKRTEAMVLTADG-MIWSGCTNGLLVQW 465 (1133)
Q Consensus 392 e~~v~lasgs~Dg~i~--~~~~~~~~~~~~~~~~V~~v~~~p~g~~~---~h~~~V~sl~~spdg-~L~sgs~DG~I~vW 465 (1133)
++++|-||.|. .++..... .-...+|.-..... ..--+|++++|+|-. .|+||+.||.|.+|
T Consensus 192 -----y~~sSieGRVavE~~d~s~~~-------~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~W 259 (323)
T KOG1036|consen 192 -----YVVSSIEGRVAVEYFDDSEEA-------QSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIW 259 (323)
T ss_pred -----eEEEeecceEEEEccCCchHH-------hhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEc
Confidence 99999999997 33322000 01112222101101 112368999999987 99999999999999
Q ss_pred eC-CCCeeEEEecCCcceeE--EecCCCEEEEEec
Q 043350 466 DG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYV 497 (1133)
Q Consensus 466 d~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~ 497 (1133)
|+ +.+.+..+..-...|.+ |+.+|..||+|+.
T Consensus 260 d~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 260 DLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99 55788888776555665 9999999999983
No 117
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=4.3e-17 Score=186.31 Aligned_cols=285 Identities=12% Similarity=0.131 Sum_probs=217.8
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccC-CCCeEEEEEeeCCcEEEEeCCCcEEEEeC
Q 043350 212 TSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAH-RGPVLAMIFSSQGDLWSGGEGGVIKIWPW 290 (1133)
Q Consensus 212 ~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH-~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl 290 (1133)
.++|.|||++...+.||.+-.||.|-||++.. .+-+...+.+| ...|-+++|++.++|+|.+.+|+|.-||+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~-------~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN-------NWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDL 97 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCC-------CceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEec
Confidence 46899999999999999999999999999986 12334456666 67899999997777999999999999999
Q ss_pred CCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCcee--EE
Q 043350 291 ESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELL--KV 368 (1133)
Q Consensus 291 ~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l--~~ 368 (1133)
.+........+.+.. +|.+. -.+..+...+. +.||.+..++...++.. ..
T Consensus 98 ~~lk~~~~~d~~gg~---------IWsia---------i~p~~~~l~Ig----------cddGvl~~~s~~p~~I~~~r~ 149 (691)
T KOG2048|consen 98 HTLKQKYNIDSNGGA---------IWSIA---------INPENTILAIG----------CDDGVLYDFSIGPDKITYKRS 149 (691)
T ss_pred ccCceeEEecCCCcc---------eeEEE---------eCCccceEEee----------cCCceEEEEecCCceEEEEee
Confidence 986666666555544 44443 11333333333 44555555555555544 34
Q ss_pred EecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEEC
Q 043350 369 FNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLT 448 (1133)
Q Consensus 369 ~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~s 448 (1133)
|......+.+++|+|++.. +++|+.||.|+.|+....+.+.-+ ...-++.-.....-||++.+-
T Consensus 150 l~rq~sRvLslsw~~~~~~---------i~~Gs~Dg~Iriwd~~~~~t~~~~-------~~~~d~l~k~~~~iVWSv~~L 213 (691)
T KOG2048|consen 150 LMRQKSRVLSLSWNPTGTK---------IAGGSIDGVIRIWDVKSGQTLHII-------TMQLDRLSKREPTIVWSVLFL 213 (691)
T ss_pred cccccceEEEEEecCCccE---------EEecccCceEEEEEcCCCceEEEe-------eecccccccCCceEEEEEEEe
Confidence 5556678999999999988 999999999998887765554311 111111122245568999999
Q ss_pred CCCeEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCCC-----cceeeeccccC
Q 043350 449 ADGMIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGN-----LTASWIAHSSP 520 (1133)
Q Consensus 449 pdg~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~-----~l~~~~~H~~~ 520 (1133)
.++.|++|..-|+|++||. .|.+++.+..|...|.| ..++++++++++.|+.|.-|...++ .......|...
T Consensus 214 rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hd 293 (691)
T KOG2048|consen 214 RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHD 293 (691)
T ss_pred ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCccc
Confidence 9999999999999999999 78999999999999999 6777899999999999999998864 22334578999
Q ss_pred eEEeeecccceeeecccCCeeeccccC
Q 043350 521 VLKLAVGVDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 521 V~~l~fs~~~L~S~s~Dg~I~lW~l~s 547 (1133)
|.+++..+..|++++.|.++.+=.+..
T Consensus 294 vrs~av~~~~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 294 VRSMAVIENALISGGRDFTLAICSSRE 320 (691)
T ss_pred ceeeeeecceEEecceeeEEEEccccc
Confidence 999999988999999999988766544
No 118
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.79 E-value=1.6e-17 Score=172.34 Aligned_cols=301 Identities=14% Similarity=0.167 Sum_probs=215.6
Q ss_pred eeccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCC----Cccc---ccccccCCCCeEEEEEeeCCc--E
Q 043350 207 YESANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTLDDANN----PFKE---GLSWQAHRGPVLAMIFSSQGD--L 276 (1133)
Q Consensus 207 ~~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~~----~~~~---~~~l~gH~~~V~sl~fsp~g~--L 276 (1133)
+...|.+.|++|.+++ .|+++++|+.||.|.+||++....-... ...+ ...-.+|+-.|.++.|-|-.. +
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3457889999999999 7999999999999999999753210000 0011 113357888999999999877 8
Q ss_pred EEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCC-CCCeEEEEecCCceEEEecCCCce
Q 043350 277 WSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSIS-STEIKCMLSDHARARVWCAQPLSF 355 (1133)
Q Consensus 277 ~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~-~~~~~~l~S~d~~i~vwss~d~~I 355 (1133)
.|+|.|.++|+||..+......|.-++.. +.-...| .....+++.+ ..+-.|
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~me~~V-------------------YshamSp~a~sHcLiA~g--------tr~~~V 170 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFKMEGKV-------------------YSHAMSPMAMSHCLIAAG--------TRDVQV 170 (397)
T ss_pred ecccccceEEEeecccceeeEEeecCcee-------------------ehhhcChhhhcceEEEEe--------cCCCcE
Confidence 89999999999999986655555544442 1111111 2234556666 678899
Q ss_pred eEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccc----cceeeccCC-ceEEEEEe
Q 043350 356 SLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRS----RNAIMGAAD-AVRRVATR 430 (1133)
Q Consensus 356 ~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~----~~~~~~~~~-~V~~v~~~ 430 (1133)
++-|+.+|.+-+++.+|.+.|.++.|+|..++ + +++|+.||.++.|+-+. ...+..|.. ....+..
T Consensus 171 rLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~-------v-LatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~- 241 (397)
T KOG4283|consen 171 RLCDIASGSFSHTLSGHRDGVLAVEWSPSSEW-------V-LATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKT- 241 (397)
T ss_pred EEEeccCCcceeeeccccCceEEEEeccCcee-------E-EEecCCCceEEEEEeecccceeEEeecccCccCccccc-
Confidence 99999999999999999999999999998887 2 89999999999777552 334444442 1111111
Q ss_pred cCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CC-CeeEEEec--CCccee----EEecCCCEEEEEecCCeE
Q 043350 431 GAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NG-NRVSDILH--HQCAVQ----CFCTYGSRMYVGYVSGYL 501 (1133)
Q Consensus 431 p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g-~~l~~~~~--h~~~V~----~fs~dg~~Lasgs~DG~I 501 (1133)
-..|.+.+..++++.++ ++++.+.|..+++|+. +| +.+..+-. |...+. --+.+...++---.++.+
T Consensus 242 ----n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~l 317 (397)
T KOG4283|consen 242 ----NTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSL 317 (397)
T ss_pred ----cccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeE
Confidence 25788999999999999 9999999999999998 55 33333211 222111 112333333333356889
Q ss_pred EEEeC-CCCcceeeeccccCeEEeeec--ccceeeecccCCeeeccccC
Q 043350 502 QILDL-DGNLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 502 ~vwd~-~g~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s 547 (1133)
.++++ +|..+..|.+|-..|.+.++- -+..++++.|+.|..|....
T Consensus 318 all~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~l 366 (397)
T KOG4283|consen 318 ALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPAL 366 (397)
T ss_pred EEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccccc
Confidence 99997 478888999998788877777 56799999999999998743
No 119
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.3e-17 Score=174.48 Aligned_cols=286 Identities=12% Similarity=0.134 Sum_probs=180.1
Q ss_pred eeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeC--Cc-EEEEeCCC
Q 043350 207 YESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQ--GD-LWSGGEGG 283 (1133)
Q Consensus 207 ~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~--g~-L~Sgs~Dg 283 (1133)
+..+|..-|.|+.|++.|+.+|||+.|++|+|||.+.. ...+.....++.|.+.|..|.|.+. |+ +++||.|+
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~----s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr 83 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSD----SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDR 83 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCC----CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCC
Confidence 34577788999999999999999999999999997531 3456777899999999999999764 88 99999999
Q ss_pred cEEEEeCCCCceeeEeCCCCc-eEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCC
Q 043350 284 VIKIWPWESIEKSLSLKPEEK-HMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARS 362 (1133)
Q Consensus 284 tI~iWdl~~~~~~l~~~~~~~-~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~t 362 (1133)
+++||.-.. ......+. ++.... +.| +...+..+++.|..-+..+++. +.||.++||++..
T Consensus 84 tv~iWEE~~----~~~~~~~~~Wv~~tt----l~D--srssV~DV~FaP~hlGLklA~~--------~aDG~lRIYEA~d 145 (361)
T KOG2445|consen 84 TVSIWEEQE----KSEEAHGRRWVRRTT----LVD--SRSSVTDVKFAPKHLGLKLAAA--------SADGILRIYEAPD 145 (361)
T ss_pred ceeeeeecc----cccccccceeEEEEE----eec--CCcceeEEEecchhcceEEEEe--------ccCcEEEEEecCC
Confidence 999997531 11222221 111000 111 1223444445566667777777 7888888888763
Q ss_pred Ccee------EEEe-------cCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEE
Q 043350 363 KELL------KVFN-------IEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVAT 429 (1133)
Q Consensus 363 g~~l------~~~~-------~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~ 429 (1133)
---+ ..++ .+.+...|+.|+|.... .-.||.|+.+..-. ...-.+.....+. .-+.
T Consensus 146 p~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~------~p~iAvgs~e~a~~-~~~~~Iye~~e~~-rKw~--- 214 (361)
T KOG2445|consen 146 PMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMH------EPLIAVGSDEDAPH-LNKVKIYEYNENG-RKWL--- 214 (361)
T ss_pred ccccccchhhhhhhhccCCcccccCcceEEeecccccc------CceEEEEcccCCcc-ccceEEEEecCCc-ceee---
Confidence 3222 2232 24456678888864321 11177777762110 0000000000000 0000
Q ss_pred ecCCcccCCCCCEEEEEECCCC-----eEEEEecCCeEEEEeCCCCeeEEEecCCcceeEEecCCCEEEEEecCCeEEEE
Q 043350 430 RGAGAFVDDTKRTEAMVLTADG-----MIWSGCTNGLLVQWDGNGNRVSDILHHQCAVQCFCTYGSRMYVGYVSGYLQIL 504 (1133)
Q Consensus 430 ~p~g~~~~h~~~V~sl~~spdg-----~L~sgs~DG~I~vWd~~g~~l~~~~~h~~~V~~fs~dg~~Lasgs~DG~I~vw 504 (1133)
....+.+|..+|+.++|.|+- .|++++.|| |+||.+...+-..... . +.++. .+.
T Consensus 215 -kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~e---e----------~~~~~-----~~~ 274 (361)
T KOG2445|consen 215 -KVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEE---E----------VLAPD-----LMT 274 (361)
T ss_pred -eehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhh---c----------ccCCC-----Ccc
Confidence 011255777888888888763 788999999 9999875432111100 0 00111 111
Q ss_pred eCCCCcceeeeccccCeEEeeec--ccceeeecccCCeeeccc
Q 043350 505 DLDGNLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTF 545 (1133)
Q Consensus 505 d~~g~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l 545 (1133)
++.=+.+..+..|.+.|+.|.|+ |..|.|.|.||+||+|..
T Consensus 275 ~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 275 DLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred ccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 13334567788999999999999 999999999999999983
No 120
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=7.3e-17 Score=170.53 Aligned_cols=269 Identities=14% Similarity=0.139 Sum_probs=190.8
Q ss_pred eEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeC--
Q 043350 158 FLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHK-- 232 (1133)
Q Consensus 158 ~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~-- 232 (1133)
.|.++. +.+|++++ +.|.++++||........ +...+.-.|.++.|......++.++.
T Consensus 16 ~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~-----------------ti~skkyG~~~~~Fth~~~~~i~sStk~ 78 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK-----------------TINSKKYGVDLACFTHHSNTVIHSSTKE 78 (311)
T ss_pred ceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee-----------------EeecccccccEEEEecCCceEEEccCCC
Confidence 899999 99999888 778899999987743221 11122335677788777777777776
Q ss_pred CCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEee
Q 043350 233 DGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLV 311 (1133)
Q Consensus 233 Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~ 311 (1133)
|.+||.-++.. -+.+..+.||...|++|+.+|-++ ++|+|.|++|++||++.......+...+.-
T Consensus 79 d~tIryLsl~d--------NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p------ 144 (311)
T KOG1446|consen 79 DDTIRYLSLHD--------NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP------ 144 (311)
T ss_pred CCceEEEEeec--------CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc------
Confidence 88999999875 166888999999999999999999 999999999999999852111111111111
Q ss_pred cceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecC--CCceeEEEecC---CcceeEEEeCCCCC
Q 043350 312 ERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDAR--SKELLKVFNIE---GHIENRVDTQSVQD 386 (1133)
Q Consensus 312 d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~--tg~~l~~~~~h---~~~v~~l~~sp~g~ 386 (1133)
+.. .++++.+++.+ .....|+|||+| .+.+..+|... ....+.+.|||+|+
T Consensus 145 ---i~A-------------fDp~GLifA~~--------~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK 200 (311)
T KOG1446|consen 145 ---IAA-------------FDPEGLIFALA--------NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK 200 (311)
T ss_pred ---cee-------------ECCCCcEEEEe--------cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC
Confidence 111 24555666655 555599999999 45666776554 45678999999999
Q ss_pred ccccccceEEEEeeCCCCccc---cccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeE
Q 043350 387 QPVEDEMKVKFVSSNKKEKPH---GFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLL 462 (1133)
Q Consensus 387 ~~~e~e~~v~lasgs~Dg~i~---~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I 462 (1133)
. ++.+...+.++ .+.+.....+. ..|. ...- -....|+||+ .+++|+.||+|
T Consensus 201 ~---------iLlsT~~s~~~~lDAf~G~~~~tfs----------~~~~----~~~~-~~~a~ftPds~Fvl~gs~dg~i 256 (311)
T KOG1446|consen 201 S---------ILLSTNASFIYLLDAFDGTVKSTFS----------GYPN----AGNL-PLSATFTPDSKFVLSGSDDGTI 256 (311)
T ss_pred E---------EEEEeCCCcEEEEEccCCcEeeeEe----------eccC----CCCc-ceeEEECCCCcEEEEecCCCcE
Confidence 9 88888888665 33333222222 1111 1111 1456699999 99999999999
Q ss_pred EEEeC-CCCeeEEEec-CCcceeE--EecCCCEEEEEecCCeEEEEeCC
Q 043350 463 VQWDG-NGNRVSDILH-HQCAVQC--FCTYGSRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 463 ~vWd~-~g~~l~~~~~-h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~ 507 (1133)
.+|++ +|..+..+.+ +.+++.| |.|.-.++++++ ..+.+|=.+
T Consensus 257 ~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~ 303 (311)
T KOG1446|consen 257 HVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPD 303 (311)
T ss_pred EEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEecc
Confidence 99999 7788988888 7888888 777766666654 556677543
No 121
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.8e-17 Score=190.60 Aligned_cols=266 Identities=17% Similarity=0.262 Sum_probs=193.3
Q ss_pred CCEEEEecCCCeEEeccCCCCCCCCCCeeee-ccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCc
Q 043350 115 VEFIGSGGGTGIFKVPSRAAVHPGRPPCLEL-RPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGA 190 (1133)
Q Consensus 115 g~~lasgs~dg~irlW~~~~~~~g~~~~~~l-~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~ 190 (1133)
...||.|.+ ..+.+|+... +. +..+ ..+.. .|+++. +++|.+|| ..+|.|.|||.......
T Consensus 188 ~n~laValg-~~vylW~~~s---~~--v~~l~~~~~~-------~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~-- 252 (484)
T KOG0305|consen 188 ANVLAVALG-QSVYLWSASS---GS--VTELCSFGEE-------LVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT-- 252 (484)
T ss_pred CCeEEEEec-ceEEEEecCC---Cc--eEEeEecCCC-------ceEEEEECCCCCEEEEeecCCeEEEEehhhcccc--
Confidence 345666654 5679998763 33 2222 22344 899999 99999999 77999999998874332
Q ss_pred CCCccccCCCCCCCceeecc-CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEE
Q 043350 191 GIGGRVRRGDEDAAPFYESA-NTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMI 269 (1133)
Q Consensus 191 gh~~~v~~g~~~~~~~~~~~-h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~ 269 (1133)
. ...+ |...|-|++|+ +..+.+|+.|+.|..+|++... ....++.+|+..|..+.
T Consensus 253 --------------~-~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~-------~~~~~~~~H~qeVCgLk 308 (484)
T KOG0305|consen 253 --------------R-TLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQ-------HVVSTLQGHRQEVCGLK 308 (484)
T ss_pred --------------c-cccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecch-------hhhhhhhcccceeeeeE
Confidence 1 1223 77889999997 7889999999999999998622 11225899999999999
Q ss_pred EeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEE
Q 043350 270 FSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVW 348 (1133)
Q Consensus 270 fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vw 348 (1133)
|++++. |+||+.|+.+.|||.......+.+..+...+ .....|+ ......+.+.+
T Consensus 309 ws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAV----------------KA~awcP-~q~~lLAsGGG------- 364 (484)
T KOG0305|consen 309 WSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAV----------------KALAWCP-WQSGLLATGGG------- 364 (484)
T ss_pred ECCCCCeeccCCCccceEeccCCCccccEEEeccceee----------------eEeeeCC-CccCceEEcCC-------
Confidence 999999 9999999999999996543333333322221 1122232 23445555556
Q ss_pred ecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEE
Q 043350 349 CAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVA 428 (1133)
Q Consensus 349 ss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~ 428 (1133)
..|+.|++||..+|..+..+.. +..|..|.|++..+- |+++
T Consensus 365 -s~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kE---------i~st---------------------------- 405 (484)
T KOG0305|consen 365 -SADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKE---------LLST---------------------------- 405 (484)
T ss_pred -CcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCE---------EEEe----------------------------
Confidence 7899999999999988876653 334667777765543 3221
Q ss_pred EecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEe
Q 043350 429 TRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILD 505 (1133)
Q Consensus 429 ~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd 505 (1133)
.|..+..|.||+. .-+.+..+.+|...|.. ++|||+.+++|+.|.++++|+
T Consensus 406 --------------------------hG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 406 --------------------------HGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred --------------------------cCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 2334557899998 55788899999999998 999999999999999999999
Q ss_pred CCC
Q 043350 506 LDG 508 (1133)
Q Consensus 506 ~~g 508 (1133)
+-+
T Consensus 460 ~f~ 462 (484)
T KOG0305|consen 460 LFD 462 (484)
T ss_pred ccC
Confidence 754
No 122
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.2e-18 Score=176.85 Aligned_cols=253 Identities=15% Similarity=0.161 Sum_probs=185.4
Q ss_pred eccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEee--CCc-EEEEeCCCc
Q 043350 208 ESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSS--QGD-LWSGGEGGV 284 (1133)
Q Consensus 208 ~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp--~g~-L~Sgs~Dgt 284 (1133)
...|...|..+..+--|++|||++.|++|+|+.++. ....+++..|.||++||+.++|.. .|. |+|||.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~-----n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk 81 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRN-----NGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK 81 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcC-----CCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce
Confidence 334555566666666799999999999999999986 333467889999999999999986 688 999999999
Q ss_pred EEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCc
Q 043350 285 IKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKE 364 (1133)
Q Consensus 285 I~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~ 364 (1133)
|.||.-+++ + | .
T Consensus 82 VIiWke~~g----------~-------------------------------------------w---------------~ 93 (299)
T KOG1332|consen 82 VIIWKEENG----------R-------------------------------------------W---------------T 93 (299)
T ss_pred EEEEecCCC----------c-------------------------------------------h---------------h
Confidence 999986531 0 0 1
Q ss_pred eeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccc--ccccc----ccceeeccCCceEEEEEecC---Ccc
Q 043350 365 LLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPH--GFLQR----SRNAIMGAADAVRRVATRGA---GAF 435 (1133)
Q Consensus 365 ~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~--~~~~~----~~~~~~~~~~~V~~v~~~p~---g~~ 435 (1133)
....+..|...|++++|.|.+-- +-|++++.||+|. .++.. .......|.-.|.++++.|. |.+
T Consensus 94 k~~e~~~h~~SVNsV~wapheyg-------l~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 94 KAYEHAAHSASVNSVAWAPHEYG-------LLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred hhhhhhhhcccceeecccccccc-------eEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 12345668888999999996431 1299999999997 22221 12234566677777777765 333
Q ss_pred cCCCCCEEEEEECCCCeEEEEecCCeEEEEeCCC---CeeEEEecCCcceeE--EecCC----CEEEEEecCCeEEEEeC
Q 043350 436 VDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGNG---NRVSDILHHQCAVQC--FCTYG----SRMYVGYVSGYLQILDL 506 (1133)
Q Consensus 436 ~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~g---~~l~~~~~h~~~V~~--fs~dg----~~Lasgs~DG~I~vwd~ 506 (1133)
.++... .+-..|++|+.|..|+||+.+. ..-+++.+|...|.. ++|.- .+||+++.||+|.||..
T Consensus 167 ~~~~~~------~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~ 240 (299)
T KOG1332|consen 167 VDQGPA------AKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK 240 (299)
T ss_pred cccCcc------cccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEe
Confidence 222210 1112699999999999999944 445568899999987 77753 48999999999999987
Q ss_pred CCC--c--ceeeeccccCeEEeeec--ccceeeecccCCeeecccc
Q 043350 507 DGN--L--TASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFT 546 (1133)
Q Consensus 507 ~g~--~--l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~ 546 (1133)
..+ + ..-+.....+++.+.|+ |..|+.++.|..|.+|.-.
T Consensus 241 ~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 241 DEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 632 1 12233456889999999 8999999999999999843
No 123
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.78 E-value=7.5e-18 Score=185.32 Aligned_cols=264 Identities=15% Similarity=0.189 Sum_probs=195.5
Q ss_pred CCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCC-------CeeeeccCCCccccccceEEEEE---eCCCC
Q 043350 99 PDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRP-------PCLELRPHPLKETQAGRFLRNIA---CTDTQ 168 (1133)
Q Consensus 99 ~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~-------~~~~l~~H~~~~~~~g~~V~~v~---s~dg~ 168 (1133)
|+..+....++ .-+...||+++..+.+.|||... +++.+ |-+.|++|.. .-+++. ...|.
T Consensus 123 h~gEVnRaRym--PQnp~iVAt~t~~~dv~Vfd~tk-~~s~~~~~~~~~Pdl~L~gH~~-------eg~glsWn~~~~g~ 192 (422)
T KOG0264|consen 123 HDGEVNRARYM--PQNPNIVATKTSSGDVYVFDYTK-HPSKPKASGECRPDLRLKGHEK-------EGYGLSWNRQQEGT 192 (422)
T ss_pred CCccchhhhhC--CCCCcEEEecCCCCCEEEEEecc-CCCcccccccCCCceEEEeecc-------ccccccccccccee
Confidence 44444443333 22455788899999999999753 33333 2458999988 344566 34677
Q ss_pred eEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCC
Q 043350 169 LWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTLD 246 (1133)
Q Consensus 169 lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~ 246 (1133)
++. +.|++|.+||+......- ....+..++.+|...|..++|++ +..++++++.|+.+.|||++...
T Consensus 193 Lls~~~d~~i~lwdi~~~~~~~----------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~- 261 (422)
T KOG0264|consen 193 LLSGSDDHTICLWDINAESKED----------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT- 261 (422)
T ss_pred EeeccCCCcEEEEeccccccCC----------ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC-
Confidence 777 999999999998732210 01222457788999999999999 78899999999999999999621
Q ss_pred CCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceee
Q 043350 247 DANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTV 324 (1133)
Q Consensus 247 ~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v 324 (1133)
-+......+|.++|+|++|+|.+. |||||.|++|++||+++.
T Consensus 262 -----~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL------------------------------- 305 (422)
T KOG0264|consen 262 -----SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL------------------------------- 305 (422)
T ss_pred -----CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc-------------------------------
Confidence 255667889999999999999987 999999999999998641
Q ss_pred eccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCC
Q 043350 325 NGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKE 404 (1133)
Q Consensus 325 ~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg 404 (1133)
.+++.++.+|...|..|.|||.... + +|+++.|+
T Consensus 306 --------------------------------------~~~lh~~e~H~dev~~V~WSPh~et-------v-LASSg~D~ 339 (422)
T KOG0264|consen 306 --------------------------------------NKPLHTFEGHEDEVFQVEWSPHNET-------V-LASSGTDR 339 (422)
T ss_pred --------------------------------------ccCceeccCCCcceEEEEeCCCCCc-------e-eEecccCC
Confidence 2256778899999999999997653 1 89999999
Q ss_pred cccccccccccee---eccCCceEEEEEecCCcccCCCCCEEEEEECCCC--eEEEEecCCeEEEEeCCC
Q 043350 405 KPHGFLQRSRNAI---MGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG--MIWSGCTNGLLVQWDGNG 469 (1133)
Q Consensus 405 ~i~~~~~~~~~~~---~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg--~L~sgs~DG~I~vWd~~g 469 (1133)
.+..|+...+... ....+....+-|. -.||...|..+.+.|+. .|++.++|+.+.||....
T Consensus 340 rl~vWDls~ig~eq~~eda~dgppEllF~----HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 340 RLNVWDLSRIGEEQSPEDAEDGPPELLFI----HGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cEEEEeccccccccChhhhccCCcceeEE----ecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 9987765433221 1122222233333 36889999999999998 899999999999998854
No 124
>PTZ00420 coronin; Provisional
Probab=99.78 E-value=5.8e-17 Score=194.03 Aligned_cols=144 Identities=13% Similarity=0.246 Sum_probs=110.0
Q ss_pred EecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCC-CCeEE--ecCCcEEEeeCCCCCCcCcCCCcc
Q 043350 120 SGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTD-TQLWA--GQECGVRFWNLEDSYEPGAGIGGR 195 (1133)
Q Consensus 120 sgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~d-g~lla--s~Dg~VrvWdl~~~~~~~~gh~~~ 195 (1133)
.|+.++.+++|+.. ..+++..+.+|.. .|.+++ +|+ +.+|+ +.|++|+|||+.........
T Consensus 49 gGG~~gvI~L~~~~----r~~~v~~L~gH~~-------~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~---- 113 (568)
T PTZ00420 49 GGGLIGAIRLENQM----RKPPVIKLKGHTS-------SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE---- 113 (568)
T ss_pred CCCceeEEEeeecC----CCceEEEEcCCCC-------CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc----
Confidence 36778999999876 3345888999999 999999 875 67777 88999999999752110000
Q ss_pred ccCCCCCCCceeeccCCCCeEEEEEeCCCCE-EEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCC
Q 043350 196 VRRGDEDAAPFYESANTSPTMCLMVDCGNRL-VWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQG 274 (1133)
Q Consensus 196 v~~g~~~~~~~~~~~h~s~V~~la~spd~~~-LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g 274 (1133)
.......+.+|...|.+++|+|++.. |++|+.|++|+|||+..+ .....+. |...|.+++|+|+|
T Consensus 114 -----i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg--------~~~~~i~-~~~~V~SlswspdG 179 (568)
T PTZ00420 114 -----IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE--------KRAFQIN-MPKKLSSLKWNIKG 179 (568)
T ss_pred -----cccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC--------cEEEEEe-cCCcEEEEEECCCC
Confidence 00002245678899999999998765 579999999999999862 2223343 56789999999999
Q ss_pred c-EEEEeCCCcEEEEeCCC
Q 043350 275 D-LWSGGEGGVIKIWPWES 292 (1133)
Q Consensus 275 ~-L~Sgs~DgtI~iWdl~~ 292 (1133)
. |++++.|++|+|||+++
T Consensus 180 ~lLat~s~D~~IrIwD~Rs 198 (568)
T PTZ00420 180 NLLSGTCVGKHMHIIDPRK 198 (568)
T ss_pred CEEEEEecCCEEEEEECCC
Confidence 9 99999999999999854
No 125
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=1.9e-17 Score=183.18 Aligned_cols=267 Identities=17% Similarity=0.250 Sum_probs=203.4
Q ss_pred CCeEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeC
Q 043350 213 SPTMCLMVDCG-NRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPW 290 (1133)
Q Consensus 213 s~V~~la~spd-~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl 290 (1133)
++|.+++|+|. ..-+|+.+. -.+.|++..+. .....+......|.++.|-.||. |+.|...|.|+|+|.
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~--------~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~ 97 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTR--------SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDM 97 (487)
T ss_pred CcceeEecCCCCCCceEEecc-cEEEEEecchh--------hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecc
Confidence 47999999993 333454443 47899998761 22334555678999999999999 899999999999997
Q ss_pred CC--CceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEE
Q 043350 291 ES--IEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKV 368 (1133)
Q Consensus 291 ~~--~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~ 368 (1133)
.+ ..+.+..|....+ ...+ +..+...++++ +.|+.+++||+.+......
T Consensus 98 k~r~iLR~~~ah~apv~---------~~~f------------~~~d~t~l~s~--------sDd~v~k~~d~s~a~v~~~ 148 (487)
T KOG0310|consen 98 KSRVILRQLYAHQAPVH---------VTKF------------SPQDNTMLVSG--------SDDKVVKYWDLSTAYVQAE 148 (487)
T ss_pred ccHHHHHHHhhccCcee---------EEEe------------cccCCeEEEec--------CCCceEEEEEcCCcEEEEE
Confidence 65 3444444544444 2222 23455566666 8899999999999987668
Q ss_pred EecCCcceeEEEeCCCCC-ccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEE
Q 043350 369 FNIEGHIENRVDTQSVQD-QPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVL 447 (1133)
Q Consensus 369 ~~~h~~~v~~l~~sp~g~-~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~ 447 (1133)
+.+|.+.|.+.+++|... + +++||.||+|+.|+.+.... .+. . -.|..+|..+.+
T Consensus 149 l~~htDYVR~g~~~~~~~hi---------vvtGsYDg~vrl~DtR~~~~------~v~--e-------lnhg~pVe~vl~ 204 (487)
T KOG0310|consen 149 LSGHTDYVRCGDISPANDHI---------VVTGSYDGKVRLWDTRSLTS------RVV--E-------LNHGCPVESVLA 204 (487)
T ss_pred ecCCcceeEeeccccCCCeE---------EEecCCCceEEEEEeccCCc------eeE--E-------ecCCCceeeEEE
Confidence 999999999999999755 6 89999999999888774321 111 1 257788999999
Q ss_pred CCCC-eEEEEecCCeEEEEeCC-C-CeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCC-CcceeeeccccCe
Q 043350 448 TADG-MIWSGCTNGLLVQWDGN-G-NRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG-NLTASWIAHSSPV 521 (1133)
Q Consensus 448 spdg-~L~sgs~DG~I~vWd~~-g-~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g-~~l~~~~~H~~~V 521 (1133)
-|.| .|++++. ..|++||+. | +.+..+..|...|+| +..++..|++|+-||.|++||+.. +.+..|. -.++|
T Consensus 205 lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pv 282 (487)
T KOG0310|consen 205 LPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPV 282 (487)
T ss_pred cCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccce
Confidence 9998 7777664 579999994 5 556666669999999 888999999999999999999764 4554443 57899
Q ss_pred EEeeec--ccceeeecccCCeeec
Q 043350 522 LKLAVG--VDHIYSLAAHGGIRGW 543 (1133)
Q Consensus 522 ~~l~fs--~~~L~S~s~Dg~I~lW 543 (1133)
.+++.+ ++.++.|-.+|.+.+=
T Consensus 283 Lsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 283 LSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred eeEEecCCCceEEEecccceeeee
Confidence 999999 6888999999987654
No 126
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.78 E-value=1.3e-17 Score=182.91 Aligned_cols=282 Identities=15% Similarity=0.174 Sum_probs=201.9
Q ss_pred eeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCC--C-CC------Cccccccc-ccCCCCeEEEEEeeCCc-
Q 043350 207 YESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDD--A-NN------PFKEGLSW-QAHRGPVLAMIFSSQGD- 275 (1133)
Q Consensus 207 ~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~--~-~~------~~~~~~~l-~gH~~~V~sl~fsp~g~- 275 (1133)
+...|.-+|+||+++|++.++++++.||+|.=|++..+... - .. ...+...- .+|...|.+++.++||+
T Consensus 137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgky 216 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKY 216 (479)
T ss_pred eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcE
Confidence 34568889999999999999999999999999998765431 0 00 01111111 48999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCcee--eEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCC
Q 043350 276 LWSGGEGGVIKIWPWESIEKS--LSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPL 353 (1133)
Q Consensus 276 L~Sgs~DgtI~iWdl~~~~~~--l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~ 353 (1133)
|+||+.|..|.||+.++.... +..+-+.. .+++....++..+.+ +.|.
T Consensus 217 latgg~d~~v~Iw~~~t~ehv~~~~ghr~~V--------------------~~L~fr~gt~~lys~----------s~Dr 266 (479)
T KOG0299|consen 217 LATGGRDRHVQIWDCDTLEHVKVFKGHRGAV--------------------SSLAFRKGTSELYSA----------SADR 266 (479)
T ss_pred EEecCCCceEEEecCcccchhhcccccccce--------------------eeeeeecCccceeee----------ecCC
Confidence 999999999999999884322 22222222 122222333333333 5688
Q ss_pred ceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCC
Q 043350 354 SFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAG 433 (1133)
Q Consensus 354 ~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g 433 (1133)
+|++|++.....+.++-+|.+.|.++....-.+. +..|+.|.+++.|.-.. -..+.
T Consensus 267 svkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~---------vtVGgrDrT~rlwKi~e----------esqli----- 322 (479)
T KOG0299|consen 267 SVKVWSIDQLSYVETLYGHQDGVLGIDALSRERC---------VTVGGRDRTVRLWKIPE----------ESQLI----- 322 (479)
T ss_pred ceEEEehhHhHHHHHHhCCccceeeechhcccce---------EEeccccceeEEEeccc----------cceee-----
Confidence 8999999999999999999999999998888877 77888999997444210 01112
Q ss_pred cccCCCCCEEEEEECCCCeEEEEecCCeEEEEeC-CCCeeEEEec-C-----------CcceeE--EecCCCEEEEEecC
Q 043350 434 AFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDG-NGNRVSDILH-H-----------QCAVQC--FCTYGSRMYVGYVS 498 (1133)
Q Consensus 434 ~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~-~g~~l~~~~~-h-----------~~~V~~--fs~dg~~Lasgs~D 498 (1133)
+.++.+.+.|++|-.+..+++|+.||.|.+|++ ..+++.+... | ..+|++ ..|..+++|+|+.+
T Consensus 323 -frg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~ 401 (479)
T KOG0299|consen 323 -FRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWS 401 (479)
T ss_pred -eeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCC
Confidence 345667788888888889999999999999999 4456655432 2 226777 77888999999999
Q ss_pred CeEEEEeCCCC-----cceeeeccccCeEEeeec--ccceeee-cccCCeeecc
Q 043350 499 GYLQILDLDGN-----LTASWIAHSSPVLKLAVG--VDHIYSL-AAHGGIRGWT 544 (1133)
Q Consensus 499 G~I~vwd~~g~-----~l~~~~~H~~~V~~l~fs--~~~L~S~-s~Dg~I~lW~ 544 (1133)
|.|++|.++.+ ++..+. -.+-|++|+|+ +++|+++ +....+--|-
T Consensus 402 G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 402 GCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred CceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceee
Confidence 99999999853 344444 56889999988 6655544 4444444443
No 127
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=5.7e-18 Score=186.26 Aligned_cols=305 Identities=13% Similarity=0.165 Sum_probs=194.8
Q ss_pred EEEecCCC-eEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEEeCCCCeEE---ecCCcEEEeeCCCCCCcCcCCC
Q 043350 118 IGSGGGTG-IFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIACTDTQLWA---GQECGVRFWNLEDSYEPGAGIG 193 (1133)
Q Consensus 118 lasgs~dg-~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~s~dg~lla---s~Dg~VrvWdl~~~~~~~~gh~ 193 (1133)
+.+++.|- .+.+||..+ |.. +..+++-... .-.++..-++.+++ ..-..|.+|.+....... +
T Consensus 10 ~sssS~d~~~~~~~dl~T---Gt~-~~~ykg~~~a------~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~---q 76 (476)
T KOG0646|consen 10 CSSSSFDPINCIVWDLRT---GTS-LLQYKGSYLA------QAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVV---Q 76 (476)
T ss_pred EeccCCCCcceeEEecCC---Cce-eEEecCcccc------cchhhhhhchhheeeecccCccccccccCchhhhh---h
Confidence 44455554 489999875 766 7777765220 11111111223443 344588999987632210 1
Q ss_pred ccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeC
Q 043350 194 GRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQ 273 (1133)
Q Consensus 194 ~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~ 273 (1133)
.-+-.++|.|++-+|+|.+|+.|...|.|++|.+..+ ..+..+.+|-..|+|+.|+.|
T Consensus 77 --------------~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG--------~LL~v~~aHYQ~ITcL~fs~d 134 (476)
T KOG0646|consen 77 --------------YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSG--------ILLNVLSAHYQSITCLKFSDD 134 (476)
T ss_pred --------------hcccccceeeeecCCCceEEEeecccCcEEEEEeccc--------cHHHHHHhhccceeEEEEeCC
Confidence 2234568999999999999999989999999999862 567788999999999999999
Q ss_pred Cc-EEEEeCCCcEEEEeCCCCceeeEe-CCCCceEEEEeecceEEEccCce-eeeccccCCCCCeEEEEecCCceEEEec
Q 043350 274 GD-LWSGGEGGVIKIWPWESIEKSLSL-KPEEKHMAALLVERSFIDLRAQV-TVNGACSISSTEIKCMLSDHARARVWCA 350 (1133)
Q Consensus 274 g~-L~Sgs~DgtI~iWdl~~~~~~l~~-~~~~~~l~s~~~d~s~~d~~~~~-~v~~~~~~~~~~~~~l~S~d~~i~vwss 350 (1133)
|. |+|||.||.|.+|.+...+....- .+.. .-.+..|. .+..+...+.+....+.+. +
T Consensus 135 gs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p-----------~~~f~~HtlsITDl~ig~Gg~~~rl~Ta--------S 195 (476)
T KOG0646|consen 135 GSHIITGSKDGAVLVWLLTDLVSADNDHSVKP-----------LHIFSDHTLSITDLQIGSGGTNARLYTA--------S 195 (476)
T ss_pred CcEEEecCCCccEEEEEEEeecccccCCCccc-----------eeeeccCcceeEEEEecCCCccceEEEe--------c
Confidence 99 999999999999998542111111 1111 11111111 1222211122222223333 7
Q ss_pred CCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccc--cccccccceeeccCCceEEEE
Q 043350 351 QPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPH--GFLQRSRNAIMGAADAVRRVA 428 (1133)
Q Consensus 351 ~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~--~~~~~~~~~~~~~~~~V~~v~ 428 (1133)
.|.++++||+..|.++.++.. ...+.+++++|.... +..|+.+|+|. .+..- .+..
T Consensus 196 ~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~---------~yiGt~~G~I~~~~~~~~-----~~~~------- 253 (476)
T KOG0646|consen 196 EDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERV---------VYIGTEEGKIFQNLLFKL-----SGQS------- 253 (476)
T ss_pred CCceEEEEEeccceeeEEEec-CCcceeEEEcccccE---------EEecCCcceEEeeehhcC-----Cccc-------
Confidence 899999999999999988764 346789999999988 99999999985 11110 0000
Q ss_pred EecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeCCCCeeEEEecCCc--ceeE--EecCCCEEEEEecCCeEEEE
Q 043350 429 TRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGNGNRVSDILHHQC--AVQC--FCTYGSRMYVGYVSGYLQIL 504 (1133)
Q Consensus 429 ~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~g~~l~~~~~h~~--~V~~--fs~dg~~Lasgs~DG~I~vw 504 (1133)
.+=..+.++..+..+..+.+|.+ .|+| ++.||..|++|+.||.|+||
T Consensus 254 -----------------------------~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvW 304 (476)
T KOG0646|consen 254 -----------------------------AGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVW 304 (476)
T ss_pred -----------------------------ccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEE
Confidence 00013334444555566666665 7777 77777777777777777777
Q ss_pred eCCC-CcceeeeccccCeEEeeec
Q 043350 505 DLDG-NLTASWIAHSSPVLKLAVG 527 (1133)
Q Consensus 505 d~~g-~~l~~~~~H~~~V~~l~fs 527 (1133)
|+.. ++++++..-.++|+.+.+.
T Consensus 305 di~S~Q~iRtl~~~kgpVtnL~i~ 328 (476)
T KOG0646|consen 305 DIYSKQCIRTLQTSKGPVTNLQIN 328 (476)
T ss_pred ecchHHHHHHHhhhccccceeEee
Confidence 7765 3455555566777777774
No 128
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.78 E-value=7.9e-18 Score=172.45 Aligned_cols=243 Identities=15% Similarity=0.147 Sum_probs=183.6
Q ss_pred cccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCce-eeeccccC-CC
Q 043350 256 LSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQV-TVNGACSI-SS 332 (1133)
Q Consensus 256 ~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~-~v~~~~~~-~~ 332 (1133)
..+++|.+.|.+|+|+.+|. |++|+.|+++++|+++..-... .+..+.+. .+..+|.. ++
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~-----------------~~~~~gh~~svdql~w~~~~ 76 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK-----------------ELVYRGHTDSVDQLCWDPKH 76 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhh-----------------hhcccCCCcchhhheeCCCC
Confidence 46788999999999999999 9999999999999997531110 11111111 33334433 35
Q ss_pred CCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccccc
Q 043350 333 TEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQR 412 (1133)
Q Consensus 333 ~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~ 412 (1133)
++..+.++ .|.+|++||.+.+++..........+ -+.|+|++.+ ++.+++|..|..++.+
T Consensus 77 ~d~~atas----------~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~---------~~~~~kdD~it~id~r 136 (313)
T KOG1407|consen 77 PDLFATAS----------GDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEY---------IAVGNKDDRITFIDAR 136 (313)
T ss_pred CcceEEec----------CCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCE---------EEEecCcccEEEEEec
Confidence 56555554 48899999999999999887766655 4689999999 9999999988644444
Q ss_pred ccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecC
Q 043350 413 SRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTY 488 (1133)
Q Consensus 413 ~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~d 488 (1133)
..+..... .....+.-+++..++ +++.....|+|.|-.. .-+++++++.|.....| |+|+
T Consensus 137 ~~~~~~~~----------------~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~ 200 (313)
T KOG1407|consen 137 TYKIVNEE----------------QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPD 200 (313)
T ss_pred ccceeehh----------------cccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCC
Confidence 32221111 111224455566556 6666677899999988 66999999999988888 9999
Q ss_pred CCEEEEEecCCeEEEEeCCC-CcceeeeccccCeEEeeec--ccceeeecccCCeeeccccCCCCc
Q 043350 489 GSRMYVGYVSGYLQILDLDG-NLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTSPSPL 551 (1133)
Q Consensus 489 g~~Lasgs~DG~I~vwd~~g-~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s~~~l 551 (1133)
|+|+|+|+.|-.+.+||++. -.+..+..|.=+|..|.|+ |++|+|+|.|..|-+=++++++.+
T Consensus 201 GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~ 266 (313)
T KOG1407|consen 201 GRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRV 266 (313)
T ss_pred CceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeE
Confidence 99999999999999999985 4577888999999999999 999999999998887776665543
No 129
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.78 E-value=7.1e-18 Score=185.50 Aligned_cols=252 Identities=14% Similarity=0.162 Sum_probs=180.4
Q ss_pred cCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCC--CCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCc
Q 043350 210 ANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTLDDA--NNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGV 284 (1133)
Q Consensus 210 ~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~--~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~Dgt 284 (1133)
.|.+.|+.+.+-| +..+||+++..+.|.|||........ ...+.+-..+.||.+.=++|+|++... |++|+.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 4777888888888 56678888999999999986533211 113455668999998889999999866 999999999
Q ss_pred EEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCce-eeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCC-
Q 043350 285 IKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQV-TVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARS- 362 (1133)
Q Consensus 285 I~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~-~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~t- 362 (1133)
|++||+...... .+.+ .....+..+. .+.....++.. ..++++. +.|+.+.|||+|+
T Consensus 202 i~lwdi~~~~~~------~~~~------~p~~~~~~h~~~VeDV~~h~~h-~~lF~sv--------~dd~~L~iwD~R~~ 260 (422)
T KOG0264|consen 202 ICLWDINAESKE------DKVV------DPKTIFSGHEDVVEDVAWHPLH-EDLFGSV--------GDDGKLMIWDTRSN 260 (422)
T ss_pred EEEEeccccccC------Cccc------cceEEeecCCcceehhhccccc-hhhheee--------cCCCeEEEEEcCCC
Confidence 999999763221 0000 0011122222 34444444433 2344455 6789999999994
Q ss_pred -CceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCC
Q 043350 363 -KELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKR 441 (1133)
Q Consensus 363 -g~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~ 441 (1133)
.++.+...+|...+++++|+|-+.+
T Consensus 261 ~~~~~~~~~ah~~~vn~~~fnp~~~~------------------------------------------------------ 286 (422)
T KOG0264|consen 261 TSKPSHSVKAHSAEVNCVAFNPFNEF------------------------------------------------------ 286 (422)
T ss_pred CCCCcccccccCCceeEEEeCCCCCc------------------------------------------------------
Confidence 4444555556666666666554433
Q ss_pred EEEEEECCCCeEEEEecCCeEEEEeCCC--CeeEEEecCCcceeE--EecCCC-EEEEEecCCeEEEEeCCC--------
Q 043350 442 TEAMVLTADGMIWSGCTNGLLVQWDGNG--NRVSDILHHQCAVQC--FCTYGS-RMYVGYVSGYLQILDLDG-------- 508 (1133)
Q Consensus 442 V~sl~~spdg~L~sgs~DG~I~vWd~~g--~~l~~~~~h~~~V~~--fs~dg~-~Lasgs~DG~I~vwd~~g-------- 508 (1133)
.||||+.|++|.+||+.. +++.++.+|...|.+ |+|..+ .||+++.|+.+.|||+..
T Consensus 287 ----------ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e 356 (422)
T KOG0264|consen 287 ----------ILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE 356 (422)
T ss_pred ----------eEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence 478899999999999843 788899999999998 888764 788888999999999752
Q ss_pred -------CcceeeeccccCeEEeeec---ccceeeecccCCeeecccc
Q 043350 509 -------NLTASWIAHSSPVLKLAVG---VDHIYSLAAHGGIRGWTFT 546 (1133)
Q Consensus 509 -------~~l~~~~~H~~~V~~l~fs---~~~L~S~s~Dg~I~lW~l~ 546 (1133)
+++..-.||...|..+.|+ .-.|+|++.|+.+.||+..
T Consensus 357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 1345556899999999999 5678999999999999865
No 130
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.77 E-value=9e-18 Score=184.58 Aligned_cols=279 Identities=11% Similarity=0.163 Sum_probs=200.7
Q ss_pred ccccceEEEEE-eCCCCeEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEE
Q 043350 153 TQAGRFLRNIA-CTDTQLWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTG 230 (1133)
Q Consensus 153 ~~~g~~V~~v~-s~dg~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSg 230 (1133)
..+|.-|.+++ +...+.+. +..|.|+|||+..........+ - + ++ ....-+.++...|||+.|++|
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~Pvsq-------L---d-cl-~rdnyiRSckL~pdgrtLivG 483 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQ-------L---D-CL-NRDNYIRSCKLLPDGRTLIVG 483 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCcccc-------c---c-cc-CcccceeeeEecCCCceEEec
Confidence 34455788888 55555554 9999999999987422111000 0 0 00 112246778888999999999
Q ss_pred eCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCC--CceeeEeCCCCceEE
Q 043350 231 HKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWES--IEKSLSLKPEEKHMA 307 (1133)
Q Consensus 231 s~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~--~~~~l~~~~~~~~l~ 307 (1133)
+.-.++.|||+..... .....+..-.-..++++.+||.+ .++|..||.|.|||+.+ .++.+..++++..
T Consensus 484 GeastlsiWDLAapTp------rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas-- 555 (705)
T KOG0639|consen 484 GEASTLSIWDLAAPTP------RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS-- 555 (705)
T ss_pred cccceeeeeeccCCCc------chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCce--
Confidence 9999999999975211 11122333334678899999999 99999999999999987 4666777777776
Q ss_pred EEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEe-cCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCC
Q 043350 308 ALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWC-AQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQD 386 (1133)
Q Consensus 308 s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vws-s~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~ 386 (1133)
++++. .++ .++|+ +-|++|+-||++++..++.... ...|.++..+|+++
T Consensus 556 -------cIdis-------------~dG---------tklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~d 605 (705)
T KOG0639|consen 556 -------CIDIS-------------KDG---------TKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGD 605 (705)
T ss_pred -------eEEec-------------CCC---------ceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCcc
Confidence 55554 222 34444 5799999999999987765543 34578999999999
Q ss_pred ccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEE
Q 043350 387 QPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQW 465 (1133)
Q Consensus 387 ~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vW 465 (1133)
+ ++.|-..+.+... |...-. .-++.-|...|.++.|++.| ++++.+.|..+..|
T Consensus 606 W---------lavGMens~vevl----------h~skp~------kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnaw 660 (705)
T KOG0639|consen 606 W---------LAVGMENSNVEVL----------HTSKPE------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 660 (705)
T ss_pred c---------eeeecccCcEEEE----------ecCCcc------ceeecccccEEEEEEecccCceeeecCchhhhhhc
Confidence 9 9999887776211 100000 01245678889999999999 99999999999999
Q ss_pred eC-CCCeeEEEecCCcceeE-EecCCCEEEEEecCCeEEEEeC
Q 043350 466 DG-NGNRVSDILHHQCAVQC-FCTYGSRMYVGYVSGYLQILDL 506 (1133)
Q Consensus 466 d~-~g~~l~~~~~h~~~V~~-fs~dg~~Lasgs~DG~I~vwd~ 506 (1133)
.. -|..+...+..+.-..| +|.|.+||++|+.|....||.+
T Consensus 661 rtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 661 RTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 98 77777777665555555 9999999999999999999875
No 131
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.5e-17 Score=172.57 Aligned_cols=325 Identities=10% Similarity=0.084 Sum_probs=210.1
Q ss_pred cccccCCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccc-cceEEEEE-eCCCCeE
Q 043350 93 DYVCPGPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQA-GRFLRNIA-CTDTQLW 170 (1133)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~-g~~V~~v~-s~dg~ll 170 (1133)
.....||...++. +.|+.||.+|||++.|++||||+.... +.+.|.-.-..+ -..-+.+. +||-.-+
T Consensus 79 ~~~LKgH~~~vt~---~~FsSdGK~lat~~~Dr~Ir~w~~~DF--------~~~eHr~~R~nve~dhpT~V~FapDc~s~ 147 (420)
T KOG2096|consen 79 VSVLKGHKKEVTD---VAFSSDGKKLATISGDRSIRLWDVRDF--------ENKEHRCIRQNVEYDHPTRVVFAPDCKSV 147 (420)
T ss_pred hhhhhccCCceee---eEEcCCCceeEEEeCCceEEEEecchh--------hhhhhhHhhccccCCCceEEEECCCcceE
Confidence 3344588888887 899999999999999999999997631 222222100000 00234455 6665444
Q ss_pred E---ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCC
Q 043350 171 A---GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDD 247 (1133)
Q Consensus 171 a---s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~ 247 (1133)
+ -...++++|.+.........|.. +. ++. -.....|.-+|..+-...++.+|+|++.|.+|.+|++.+
T Consensus 148 vv~~~~g~~l~vyk~~K~~dG~~~~~~-v~---~D~-~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG---- 218 (420)
T KOG2096|consen 148 VVSVKRGNKLCVYKLVKKTDGSGSHHF-VH---IDN-LEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG---- 218 (420)
T ss_pred EEEEccCCEEEEEEeeecccCCCCccc-cc---ccc-cccchhcccceEEEeecCCceEEEEecCCCcEEEEecCC----
Confidence 4 55678999988663221111110 00 000 012335666777777788899999999999999999997
Q ss_pred CCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeec
Q 043350 248 ANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNG 326 (1133)
Q Consensus 248 ~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~ 326 (1133)
+.+.++......-+..+.+|+|+ |++++.---|++|.+- +..
T Consensus 219 -----q~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~-------f~k------------------------- 261 (420)
T KOG2096|consen 219 -----QLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPI-------FTK------------------------- 261 (420)
T ss_pred -----ceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEE-------ecc-------------------------
Confidence 55555554445556778999999 9999999999999751 111
Q ss_pred cccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCcc
Q 043350 327 ACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKP 406 (1133)
Q Consensus 327 ~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i 406 (1133)
||++ ..-..+..+.+|...|..++|+++... +++.|+||+.
T Consensus 262 -------------------------dG~f-----qev~rvf~LkGH~saV~~~aFsn~S~r---------~vtvSkDG~w 302 (420)
T KOG2096|consen 262 -------------------------DGTF-----QEVKRVFSLKGHQSAVLAAAFSNSSTR---------AVTVSKDGKW 302 (420)
T ss_pred -------------------------Ccch-----hhhhhhheeccchhheeeeeeCCCcce---------eEEEecCCcE
Confidence 1111 111223467899999999999999999 9999999999
Q ss_pred ccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeC-CCCeeEEEec-CCcceeE
Q 043350 407 HGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDG-NGNRVSDILH-HQCAVQC 484 (1133)
Q Consensus 407 ~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~-~g~~l~~~~~-h~~~V~~ 484 (1133)
+.|+.......... ..+... .| ..+....+.-..+..+|+|.++..+....++++.. .|+..-++.. |...|.|
T Consensus 303 riwdtdVrY~~~qD-pk~Lk~--g~-~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~ 378 (420)
T KOG2096|consen 303 RIWDTDVRYEAGQD-PKILKE--GS-APLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISS 378 (420)
T ss_pred EEeeccceEecCCC-chHhhc--CC-cchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceee
Confidence 97765432221111 000000 00 11222333344788999995555555678999988 6666666654 8899998
Q ss_pred --EecCCCEEEEEecCCeEEEEe-CCC--Ccceeeeccc
Q 043350 485 --FCTYGSRMYVGYVSGYLQILD-LDG--NLTASWIAHS 518 (1133)
Q Consensus 485 --fs~dg~~Lasgs~DG~I~vwd-~~g--~~l~~~~~H~ 518 (1133)
|+++|+++++++ |..++|+. ..| ..+..|.+|.
T Consensus 379 is~~~~g~~~atcG-dr~vrv~~ntpg~~~~V~~~~~~l 416 (420)
T KOG2096|consen 379 ISYSSDGKYIATCG-DRYVRVIRNTPGWHSRVVKLNREL 416 (420)
T ss_pred EEecCCCcEEeeec-ceeeeeecCCCchhhHHHHhhccc
Confidence 999999999986 78888886 333 2344455553
No 132
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.77 E-value=5.1e-18 Score=192.11 Aligned_cols=308 Identities=14% Similarity=0.167 Sum_probs=201.0
Q ss_pred CCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q 043350 166 DTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQ 243 (1133)
Q Consensus 166 dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~ 243 (1133)
..++|+ -.||.|.++|.....-.+ +...-.-...|...|..+.|-|....|++++.|.++++||+.+
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~-----------ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRL-----------EERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcch-----------hhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecc
Confidence 346666 678999999987621111 1111233567999999999999888999999999999999987
Q ss_pred CCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCc
Q 043350 244 TLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQ 321 (1133)
Q Consensus 244 ~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~ 321 (1133)
... .-...+.||.+.|.+++|.|... ++||+.||.|.|||++-.... ........+.+ .
T Consensus 132 s~l------~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d--~~e~~~~~~~~--------~--- 192 (720)
T KOG0321|consen 132 SRL------VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVD--ALEEFDNRIYG--------R--- 192 (720)
T ss_pred cee------ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchh--hHHHHhhhhhc--------c---
Confidence 322 22235889999999999999988 999999999999998642100 00000000000 0
Q ss_pred eeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeE---EEeCCCCCccccccceEEEE
Q 043350 322 VTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENR---VDTQSVQDQPVEDEMKVKFV 398 (1133)
Q Consensus 322 ~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~---l~~sp~g~~~~e~e~~v~la 398 (1133)
.++. +.+ .. ...+-+.....+...+.+ +.+..|... ||
T Consensus 193 --~n~~---ptp-sk------------------------p~~kr~~k~kA~s~ti~ssvTvv~fkDe~t---------la 233 (720)
T KOG0321|consen 193 --HNTA---PTP-SK------------------------PLKKRIRKWKAASNTIFSSVTVVLFKDEST---------LA 233 (720)
T ss_pred --ccCC---CCC-Cc------------------------hhhccccccccccCceeeeeEEEEEeccce---------ee
Confidence 0000 000 00 000001111223333332 334455556 77
Q ss_pred eeCC-CCccccccccccceee-ccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCCC---Cee
Q 043350 399 SSNK-KEKPHGFLQRSRNAIM-GAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGNG---NRV 472 (1133)
Q Consensus 399 sgs~-Dg~i~~~~~~~~~~~~-~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g---~~l 472 (1133)
+++. |+.|+.|+.+...... +..-.+..+-.+ ......+.++.....| +|++.+.|+.|++|++.+ ..+
T Consensus 234 Saga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~-----skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~ 308 (720)
T KOG0321|consen 234 SAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTH-----SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPV 308 (720)
T ss_pred eccCCCcceEEEeecccccccccCCCcccCccCc-----ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCch
Confidence 8777 9999988876544321 111111111111 1113356777788888 888888899999999944 445
Q ss_pred EEEecCC---cceeE-EecCCCEEEEEecCCeEEEEeCCC--CcceeeeccccCeEEeeec---ccceeeecccCCeeec
Q 043350 473 SDILHHQ---CAVQC-FCTYGSRMYVGYVSGYLQILDLDG--NLTASWIAHSSPVLKLAVG---VDHIYSLAAHGGIRGW 543 (1133)
Q Consensus 473 ~~~~~h~---~~V~~-fs~dg~~Lasgs~DG~I~vwd~~g--~~l~~~~~H~~~V~~l~fs---~~~L~S~s~Dg~I~lW 543 (1133)
..+.++. ..|.+ .+||+.+|++|+.|...++|.+.. .....+.||.-.|+.++|. -.-+++|++|..+++|
T Consensus 309 ~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW 388 (720)
T KOG0321|consen 309 AEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIW 388 (720)
T ss_pred hhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEE
Confidence 5555432 22333 999999999999999999999984 4566788999999999998 5668899999999999
Q ss_pred cccC
Q 043350 544 TFTS 547 (1133)
Q Consensus 544 ~l~s 547 (1133)
++..
T Consensus 389 ~l~~ 392 (720)
T KOG0321|consen 389 RLSN 392 (720)
T ss_pred eccC
Confidence 9943
No 133
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=3.7e-17 Score=170.68 Aligned_cols=286 Identities=11% Similarity=0.132 Sum_probs=215.0
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCC-
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLED- 184 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~- 184 (1133)
+........+++++.|.+.+||.+++ |.. +.++.||.+ .|.+|. ++.+.+++ +.|++..||...-
T Consensus 154 Vaa~~tqpi~gtASADhTA~iWs~Es---g~C-L~~Y~GH~G-------SVNsikfh~s~~L~lTaSGD~taHIW~~av~ 222 (481)
T KOG0300|consen 154 VAADSTQPICGTASADHTARIWSLES---GAC-LATYTGHTG-------SVNSIKFHNSGLLLLTASGDETAHIWKAAVN 222 (481)
T ss_pred ehhhcCCcceeecccccceeEEeecc---ccc-eeeeccccc-------ceeeEEeccccceEEEccCCcchHHHHHhhc
Confidence 33344444899999999999999985 666 899999999 999999 88888888 8999999998321
Q ss_pred ---CC-CcCcCCCcc---------cc--C------CCCCCCc-eeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q 043350 185 ---SY-EPGAGIGGR---------VR--R------GDEDAAP-FYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMD 242 (1133)
Q Consensus 185 ---~~-~~~~gh~~~---------v~--~------g~~~~~~-~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~ 242 (1133)
.. ..-.+|.+. .+ . |.....| ..+.+|.++|.|..|-..++.+++|++|.+..+||++
T Consensus 223 ~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVE 302 (481)
T KOG0300|consen 223 WEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVE 302 (481)
T ss_pred CcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeec
Confidence 00 000122211 00 0 1111112 2356799999999999999999999999999999998
Q ss_pred CCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCc
Q 043350 243 QTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQ 321 (1133)
Q Consensus 243 ~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~ 321 (1133)
.+ ..+..+.||....+.++-+|..+ ++|.|.|.+.++||++..+
T Consensus 303 tg--------e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI--------------------------- 347 (481)
T KOG0300|consen 303 TG--------EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI--------------------------- 347 (481)
T ss_pred cC--------ceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhc---------------------------
Confidence 72 45778999999999999999988 9999999999999986311
Q ss_pred eeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeC
Q 043350 322 VTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSN 401 (1133)
Q Consensus 322 ~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs 401 (1133)
..+..|++|.+.|+++.|..+.+ +++||
T Consensus 348 ------------------------------------------~sV~VFQGHtdtVTS~vF~~dd~----------vVSgS 375 (481)
T KOG0300|consen 348 ------------------------------------------QSVAVFQGHTDTVTSVVFNTDDR----------VVSGS 375 (481)
T ss_pred ------------------------------------------ceeeeecccccceeEEEEecCCc----------eeecC
Confidence 22356889999999999987764 78999
Q ss_pred CCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCCCCeeEEEe----
Q 043350 402 KKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGNGNRVSDIL---- 476 (1133)
Q Consensus 402 ~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g~~l~~~~---- 476 (1133)
.|.+|+.|+.+.... ++-.+. ...+++.++.+..+ .|+.-..+..|++||++|+.+..+.
T Consensus 376 DDrTvKvWdLrNMRs------plATIR---------tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsR 440 (481)
T KOG0300|consen 376 DDRTVKVWDLRNMRS------PLATIR---------TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSR 440 (481)
T ss_pred CCceEEEeeeccccC------cceeee---------cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccc
Confidence 999999887664433 111111 12445666666666 7888889999999999998887664
Q ss_pred -cCCcceeE--EecCC--CEEEEEecCCeEEEEeCC
Q 043350 477 -HHQCAVQC--FCTYG--SRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 477 -~h~~~V~~--fs~dg--~~Lasgs~DG~I~vwd~~ 507 (1133)
+|..-|+| |..+. .-|++++-|..+.-|++.
T Consensus 441 qgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 441 QGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred cccceeeeeeeccccCcccccccccccceeeeeEec
Confidence 58888888 44332 468899999999999875
No 134
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=7.5e-17 Score=176.47 Aligned_cols=269 Identities=14% Similarity=0.132 Sum_probs=185.1
Q ss_pred CCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC-------CCCEEEEEeCCCeEEEEeCCCCCC
Q 043350 174 ECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC-------GNRLVWTGHKDGKIRSWKMDQTLD 246 (1133)
Q Consensus 174 Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp-------d~~~LaSgs~Dg~V~vWd~~~~~~ 246 (1133)
...+-+|=.+.....+..|. .+++ ...-.|++|-. .|+++|.|..|..|.|||++--..
T Consensus 149 vs~LEvYVyn~~e~nlYvHH-----------D~il---pafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~ 214 (463)
T KOG0270|consen 149 VSYLEVYVYNEEEENLYVHH-----------DFIL---PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDA 214 (463)
T ss_pred ceEEEEEEEcCCCcceeEec-----------ceec---cCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccc
Confidence 34566665555444444444 2232 22346777743 478999999999999999874111
Q ss_pred C---------CCC----CcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEee
Q 043350 247 D---------ANN----PFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLV 311 (1133)
Q Consensus 247 ~---------~~~----~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~ 311 (1133)
. ..+ ..+.-..-.+|+..|.+|+|+..-+ |+|||.|.+|++||+
T Consensus 215 v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~--------------------- 273 (463)
T KOG0270|consen 215 VLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDV--------------------- 273 (463)
T ss_pred cccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEc---------------------
Confidence 0 000 0001112347888999999887755 888888888888877
Q ss_pred cceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCC-CCcccc
Q 043350 312 ERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSV-QDQPVE 390 (1133)
Q Consensus 312 d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~-g~~~~e 390 (1133)
.+|++..++..|+..|.++.|+|. +..
T Consensus 274 -------------------------------------------------~~g~p~~s~~~~~k~Vq~l~wh~~~p~~--- 301 (463)
T KOG0270|consen 274 -------------------------------------------------DTGKPKSSITHHGKKVQTLEWHPYEPSV--- 301 (463)
T ss_pred -------------------------------------------------CCCCcceehhhcCCceeEEEecCCCceE---
Confidence 456667777888999999999996 445
Q ss_pred ccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC--eEEEEecCCeEEEEeC-
Q 043350 391 DEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG--MIWSGCTNGLLVQWDG- 467 (1133)
Q Consensus 391 ~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg--~L~sgs~DG~I~vWd~- 467 (1133)
+++||.|+++...+.|. ..+.+. .|+ ..+.|..+++.+.. .++++..||+|+-+|+
T Consensus 302 ------LLsGs~D~~V~l~D~R~----~~~s~~----~wk-------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R 360 (463)
T KOG0270|consen 302 ------LLSGSYDGTVALKDCRD----PSNSGK----EWK-------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR 360 (463)
T ss_pred ------EEeccccceEEeeeccC----ccccCc----eEE-------eccceEEEEecCCCceeEEEecCCceEEeeecC
Confidence 99999999997555552 111111 111 23457777777777 7888899999999999
Q ss_pred -CCCeeEEEecCCcceeEEecC---CCEEEEEecCCeEEEEeCCCCcceeeeccc---cCeEEeeec---ccceeeeccc
Q 043350 468 -NGNRVSDILHHQCAVQCFCTY---GSRMYVGYVSGYLQILDLDGNLTASWIAHS---SPVLKLAVG---VDHIYSLAAH 537 (1133)
Q Consensus 468 -~g~~l~~~~~h~~~V~~fs~d---g~~Lasgs~DG~I~vwd~~g~~l~~~~~H~---~~V~~l~fs---~~~L~S~s~D 537 (1133)
.|+++.+++.|...|.+++-. ..+|++++.|++|++|++.+.--.....|. +...++++. ...++.+|..
T Consensus 361 ~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k 440 (463)
T KOG0270|consen 361 NPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEK 440 (463)
T ss_pred CCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCcc
Confidence 569999999999999995544 358999999999999999753322333343 233445555 5678888888
Q ss_pred CCeeeccccCCCC
Q 043350 538 GGIRGWTFTSPSP 550 (1133)
Q Consensus 538 g~I~lW~l~s~~~ 550 (1133)
+.+++||+....+
T Consensus 441 ~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 441 AVLRVWDIFTNSP 453 (463)
T ss_pred ceEEEeecccChh
Confidence 8999999876544
No 135
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=3.3e-16 Score=164.69 Aligned_cols=261 Identities=15% Similarity=0.183 Sum_probs=189.4
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCC
Q 043350 212 TSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWE 291 (1133)
Q Consensus 212 ~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~ 291 (1133)
...|..|.|+|.++.|+.+++||++++|++.. ..+.....|..++.+++|.++.++++|+.||.|+.+|+.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~---------~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPA---------NSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLN 83 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccc---------hhhhhheecCCceeeeeccCCceEEEeccCceEEEEEec
Confidence 34689999999888899999999999999987 445555679999999999987669999999999999998
Q ss_pred CCceeeE-eCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEe
Q 043350 292 SIEKSLS-LKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFN 370 (1133)
Q Consensus 292 ~~~~~l~-~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~ 370 (1133)
+...... -|.++... +.. ......++++ +.|++|++||.+.......+.
T Consensus 84 ~~~~~~igth~~~i~c---------i~~-------------~~~~~~vIsg--------sWD~~ik~wD~R~~~~~~~~d 133 (323)
T KOG1036|consen 84 TGNEDQIGTHDEGIRC---------IEY-------------SYEVGCVISG--------SWDKTIKFWDPRNKVVVGTFD 133 (323)
T ss_pred CCcceeeccCCCceEE---------EEe-------------eccCCeEEEc--------ccCccEEEEeccccccccccc
Confidence 8433322 23333331 111 1233455666 899999999999866665554
Q ss_pred cCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCC
Q 043350 371 IEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTAD 450 (1133)
Q Consensus 371 ~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spd 450 (1133)
... .|.++..+ +.. |+.|..+..+..|+.+........ .- ..-.-.+.++++-|+
T Consensus 134 ~~k-kVy~~~v~--g~~---------LvVg~~~r~v~iyDLRn~~~~~q~--re-----------S~lkyqtR~v~~~pn 188 (323)
T KOG1036|consen 134 QGK-KVYCMDVS--GNR---------LVVGTSDRKVLIYDLRNLDEPFQR--RE-----------SSLKYQTRCVALVPN 188 (323)
T ss_pred cCc-eEEEEecc--CCE---------EEEeecCceEEEEEcccccchhhh--cc-----------ccceeEEEEEEEecC
Confidence 433 67666655 445 889999999887766643332100 00 122334777888887
Q ss_pred C-eEEEEecCCeEEEEeCCC-----CeeEEEecCC---------cceeE--EecCCCEEEEEecCCeEEEEeCCC-Ccce
Q 043350 451 G-MIWSGCTNGLLVQWDGNG-----NRVSDILHHQ---------CAVQC--FCTYGSRMYVGYVSGYLQILDLDG-NLTA 512 (1133)
Q Consensus 451 g-~L~sgs~DG~I~vWd~~g-----~~l~~~~~h~---------~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g-~~l~ 512 (1133)
+ -.+.++-||.|.+=..+. ..-..|+.|. .+|++ |+|-...+|+|+.||.|.+||+.. +-+.
T Consensus 189 ~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~ 268 (323)
T KOG1036|consen 189 GEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLK 268 (323)
T ss_pred CCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhh
Confidence 7 788899999998755532 3344566664 35666 999999999999999999999975 5677
Q ss_pred eeeccccCeEEeeec--ccceeeecc
Q 043350 513 SWIAHSSPVLKLAVG--VDHIYSLAA 536 (1133)
Q Consensus 513 ~~~~H~~~V~~l~fs--~~~L~S~s~ 536 (1133)
.+......|.+++|+ |..|+.++.
T Consensus 269 q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 269 QLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred hccCCCCceEEEEeccCCCeEEEEec
Confidence 777778889999999 778877764
No 136
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=2.9e-17 Score=189.86 Aligned_cols=232 Identities=16% Similarity=0.182 Sum_probs=178.2
Q ss_pred eEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCC
Q 043350 215 TMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWE 291 (1133)
Q Consensus 215 V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~ 291 (1133)
+..|.|.. +.++|||++..|.|.+||+... ..-+++..+..|+..|+++.|++... |+|||.||+||+||++
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~-----~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR 164 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKS-----IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLR 164 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCcc-----ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeee
Confidence 45567765 6889999999999999999751 11256778999999999999999866 9999999999999986
Q ss_pred CCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEec
Q 043350 292 SIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNI 371 (1133)
Q Consensus 292 ~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~ 371 (1133)
.. +...++.+
T Consensus 165 ~~----------------------------------------------------------------------~S~~t~~~ 174 (839)
T KOG0269|consen 165 SK----------------------------------------------------------------------KSKSTFRS 174 (839)
T ss_pred cc----------------------------------------------------------------------cccccccc
Confidence 31 11122333
Q ss_pred CCcceeEEEeCCCC-CccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCC
Q 043350 372 EGHIENRVDTQSVQ-DQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTAD 450 (1133)
Q Consensus 372 h~~~v~~l~~sp~g-~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spd 450 (1133)
....|..|.|+|.. .. |+++...|.++.|+.|..... --++..|.++|.++.++|+
T Consensus 175 nSESiRDV~fsp~~~~~---------F~s~~dsG~lqlWDlRqp~r~--------------~~k~~AH~GpV~c~nwhPn 231 (839)
T KOG0269|consen 175 NSESIRDVKFSPGYGNK---------FASIHDSGYLQLWDLRQPDRC--------------EKKLTAHNGPVLCLNWHPN 231 (839)
T ss_pred cchhhhceeeccCCCce---------EEEecCCceEEEeeccCchhH--------------HHHhhcccCceEEEeecCC
Confidence 55678889999954 44 899999999987776632211 1236788999999999999
Q ss_pred C-eEEEEecCCeEEEEeCCC---CeeEEEecCCcceeE--EecCCC-EEEEEe--cCCeEEEEeCCC--Ccceeeecccc
Q 043350 451 G-MIWSGCTNGLLVQWDGNG---NRVSDILHHQCAVQC--FCTYGS-RMYVGY--VSGYLQILDLDG--NLTASWIAHSS 519 (1133)
Q Consensus 451 g-~L~sgs~DG~I~vWd~~g---~~l~~~~~h~~~V~~--fs~dg~-~Lasgs--~DG~I~vwd~~g--~~l~~~~~H~~ 519 (1133)
+ +||||+.|++|+||+..+ +.+.++.. ..+|.+ |-|... .||+++ .|-.|+|||+.. -+..++.-|..
T Consensus 232 r~~lATGGRDK~vkiWd~t~~~~~~~~tInT-iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~ 310 (839)
T KOG0269|consen 232 REWLATGGRDKMVKIWDMTDSRAKPKHTINT-IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD 310 (839)
T ss_pred CceeeecCCCccEEEEeccCCCccceeEEee-cceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc
Confidence 8 999999999999999965 33333332 456666 888765 566665 588999999985 46789999999
Q ss_pred CeEEeeec---ccceeeecccCCeeeccc
Q 043350 520 PVLKLAVG---VDHIYSLAAHGGIRGWTF 545 (1133)
Q Consensus 520 ~V~~l~fs---~~~L~S~s~Dg~I~lW~l 545 (1133)
.|+.++|. ...++|++.||+|..=.+
T Consensus 311 ~vt~i~W~~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 311 SVTGIAWDSGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred cccceeccCCCceeeEeecCccHHHHhhh
Confidence 99999998 467889999998775444
No 137
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.3e-16 Score=175.58 Aligned_cols=251 Identities=14% Similarity=0.151 Sum_probs=177.9
Q ss_pred eCC-CcEEEEeCCCCceeeEeCCC------------CceEEEEeecce---EEEccCceeeeccccCCCCCeEEEEecCC
Q 043350 280 GEG-GVIKIWPWESIEKSLSLKPE------------EKHMAALLVERS---FIDLRAQVTVNGACSISSTEIKCMLSDHA 343 (1133)
Q Consensus 280 s~D-gtI~iWdl~~~~~~l~~~~~------------~~~l~s~~~d~s---~~d~~~~~~v~~~~~~~~~~~~~l~S~d~ 343 (1133)
+.| .++.+||++++...+.+.+. +.+++++...+. +|.+.....+...+-.| +...++++.+.
T Consensus 14 S~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~P-g~v~al~s~n~ 92 (476)
T KOG0646|consen 14 SFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLP-GPVHALASSNL 92 (476)
T ss_pred CCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccc-cceeeeecCCC
Confidence 444 34889999887555555433 224444444444 44433222222222222 22233333322
Q ss_pred ceEEEe-cCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccc-eeeccC
Q 043350 344 RARVWC-AQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRN-AIMGAA 421 (1133)
Q Consensus 344 ~i~vws-s~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~-~~~~~~ 421 (1133)
...+.. ...+.+.+|.+.+|.++..+..|-+.|+++.|+-|+.+ |++||+||.|..|....+. ....+
T Consensus 93 G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~---------iiTgskDg~V~vW~l~~lv~a~~~~- 162 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSH---------IITGSKDGAVLVWLLTDLVSADNDH- 162 (476)
T ss_pred ceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcE---------EEecCCCccEEEEEEEeecccccCC-
Confidence 222222 57899999999999999999999999999999999999 9999999999865533211 11111
Q ss_pred CceEEEEEecCCcccCCCCCEEEEEECCCC---eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEE
Q 043350 422 DAVRRVATRGAGAFVDDTKRTEAMVLTADG---MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVG 495 (1133)
Q Consensus 422 ~~V~~v~~~p~g~~~~h~~~V~sl~~spdg---~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasg 495 (1133)
...|-..|.+|.-.|+.+...+.| +|+|++.|.++++||+ .|.++.++.. ...+.| ++|-+..+++|
T Consensus 163 ------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiG 235 (476)
T KOG0646|consen 163 ------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIG 235 (476)
T ss_pred ------CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEec
Confidence 111222367888899998887765 9999999999999999 5677777665 455666 89999999999
Q ss_pred ecCCeEEEEeCCC-----------------Ccceeeecccc--CeEEeeec--ccceeeecccCCeeeccccCC
Q 043350 496 YVSGYLQILDLDG-----------------NLTASWIAHSS--PVLKLAVG--VDHIYSLAAHGGIRGWTFTSP 548 (1133)
Q Consensus 496 s~DG~I~vwd~~g-----------------~~l~~~~~H~~--~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s~ 548 (1133)
+.+|.|.+.++.+ ..+..+.||.+ +|++++++ +..|+||+.||.|++||+.+.
T Consensus 236 t~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 236 TEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred CCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 9999999887532 23556889998 99999998 999999999999999998874
No 138
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.72 E-value=3e-16 Score=162.97 Aligned_cols=286 Identities=16% Similarity=0.230 Sum_probs=189.7
Q ss_pred CCCEEEEecCCCeEEeccCCCCCCCC-------CCeeeeccCCCccccccceEEEEE-eC-CCCeEE--ecCCcEEEeeC
Q 043350 114 MVEFIGSGGGTGIFKVPSRAAVHPGR-------PPCLELRPHPLKETQAGRFLRNIA-CT-DTQLWA--GQECGVRFWNL 182 (1133)
Q Consensus 114 ~g~~lasgs~dg~irlW~~~~~~~g~-------~~~~~l~~H~~~~~~~g~~V~~v~-s~-dg~lla--s~Dg~VrvWdl 182 (1133)
.|+++++|+.||.+.+||++....-+ ..+..-+.|+. .+...|..+. .| |.-++. +-|.+++|||.
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~---~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDt 131 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHEN---GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDT 131 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCc---cceeeeeeeEEeeecCceeecccccceEEEeec
Confidence 68899999999999999976432111 11112233443 2233677777 44 555555 88999999999
Q ss_pred CCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC---CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccc
Q 043350 183 EDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC---GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQ 259 (1133)
Q Consensus 183 ~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp---d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~ 259 (1133)
.+..... .|.+ .+.|+.-+++| .-.++|+|..|-.|++-|+..+ ...+++.
T Consensus 132 nTlQ~a~---------------~F~m---e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG--------s~sH~Ls 185 (397)
T KOG4283|consen 132 NTLQEAV---------------DFKM---EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG--------SFSHTLS 185 (397)
T ss_pred ccceeeE---------------Eeec---CceeehhhcChhhhcceEEEEecCCCcEEEEeccCC--------cceeeec
Confidence 8843211 1111 22455556666 2347889999999999999864 3467899
Q ss_pred cCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEE
Q 043350 260 AHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKC 337 (1133)
Q Consensus 260 gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~ 337 (1133)
||++.|.+|.|+|..+ |+|||.||.||+||++..
T Consensus 186 GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRra-------------------------------------------- 221 (397)
T KOG4283|consen 186 GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRA-------------------------------------------- 221 (397)
T ss_pred cccCceEEEEeccCceeEEEecCCCceEEEEEeecc--------------------------------------------
Confidence 9999999999999988 999999999999999641
Q ss_pred EEecCCceEEEecCCCceeEeecCCCc---eeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccccccc
Q 043350 338 MLSDHARARVWCAQPLSFSLWDARSKE---LLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSR 414 (1133)
Q Consensus 338 l~S~d~~i~vwss~d~~I~lWD~~tg~---~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~ 414 (1133)
.+++++-|..+++ .+++-..|.+.++.++|+.++.+ +++.+.|..++.|+....
T Consensus 222 --------------sgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~---------l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 222 --------------SGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY---------LASCGTDDRIRVWNMESG 278 (397)
T ss_pred --------------cceeEEeecccCccCccccccccccceeeeeeecccchh---------hhhccCccceEEeecccC
Confidence 1222233333222 22233467888999999999999 999999999985553321
Q ss_pred c-eeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCC
Q 043350 415 N-AIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYG 489 (1133)
Q Consensus 415 ~-~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg 489 (1133)
. .+......+..-..+ + .+. +. +.+. .++---.++.+.++++ +|..+..+..|...|.| +.|+=
T Consensus 279 ~ntl~~~g~~~~n~~~~----~-----~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~f 347 (397)
T KOG4283|consen 279 RNTLREFGPIIHNQTTS----F-----AVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDF 347 (397)
T ss_pred ccccccccccccccccc----c-----eEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCch
Confidence 1 111110000000000 0 011 11 2222 3333334588888888 88888888889888888 88888
Q ss_pred CEEEEEecCCeEEEEeC
Q 043350 490 SRMYVGYVSGYLQILDL 506 (1133)
Q Consensus 490 ~~Lasgs~DG~I~vwd~ 506 (1133)
+.+.+|..|+.|..|-.
T Consensus 348 q~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 348 EQCFTGDMNGNIYMWSP 364 (397)
T ss_pred hhhhccccCCccccccc
Confidence 89999999999999986
No 139
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=9.3e-15 Score=172.49 Aligned_cols=240 Identities=14% Similarity=0.153 Sum_probs=171.1
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEEeCCCCeEE-ecCCcEEEeeCCCCCC
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIACTDTQLWA-GQECGVRFWNLEDSYE 187 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~s~dg~lla-s~Dg~VrvWdl~~~~~ 187 (1133)
+.+.|+|++|.+++.||.|++|+..... ..| ..+.-|.. .|.++++..+.+++ +.+++|.++.+.....
T Consensus 19 i~~d~~gefi~tcgsdg~ir~~~~~sd~-e~P--~ti~~~g~-------~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 19 ICYDPDGEFICTCGSDGDIRKWKTNSDE-EEP--ETIDISGE-------LVSSIACYSNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred EEEcCCCCEEEEecCCCceEEeecCCcc-cCC--chhhccCc-------eeEEEeecccceEEeeccceEEEeeCCCCCc
Confidence 6789999999999999999999865210 112 11211444 89999977777777 8999999999876322
Q ss_pred cCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEE
Q 043350 188 PGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLA 267 (1133)
Q Consensus 188 ~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~s 267 (1133)
. -++.--+-|+.+++|+.+|+++|.||.|-.|++-++... .....+.+|.++|.+
T Consensus 89 ~-----------------~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~--------s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 89 D-----------------TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS--------SQEKVLRGHDAPVLQ 143 (933)
T ss_pred c-----------------ceeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc--------chheeecccCCceee
Confidence 1 022223449999999999999999999999999998752 345689999999999
Q ss_pred EEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceE
Q 043350 268 MIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARAR 346 (1133)
Q Consensus 268 l~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~ 346 (1133)
|.|+|.++ |++.+.||.|++|+++.+.....+..-.. ..++.....+....++|.+...++.
T Consensus 144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k----------~n~~~~s~i~~~~aW~Pk~g~la~~------- 206 (933)
T KOG1274|consen 144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDK----------DNEFILSRICTRLAWHPKGGTLAVP------- 206 (933)
T ss_pred eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCc----------cccccccceeeeeeecCCCCeEEee-------
Confidence 99999999 99999999999999987433222211111 0011111122333444444444443
Q ss_pred EEecCCCceeEeecCCCceeEEEec--CCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccccc
Q 043350 347 VWCAQPLSFSLWDARSKELLKVFNI--EGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQR 412 (1133)
Q Consensus 347 vwss~d~~I~lWD~~tg~~l~~~~~--h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~ 412 (1133)
+.|++|++|+....+....+.. +...+..+.|+|+|.+ ||+++.+|.|..|+..
T Consensus 207 ---~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y---------iAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 207 ---PVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY---------IAASTLDGQILVWNVD 262 (933)
T ss_pred ---ccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE---------EeeeccCCcEEEEecc
Confidence 4577777777778877776644 3445889999999999 9999999999855543
No 140
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.4e-17 Score=190.79 Aligned_cols=246 Identities=20% Similarity=0.300 Sum_probs=185.7
Q ss_pred CCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcC
Q 043350 113 PMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPG 189 (1133)
Q Consensus 113 p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~ 189 (1133)
|-+.++..+..+-.+++|+.. ++-.|.. .|.++. -..+..++ +.|-.+-+|.+.......
T Consensus 2 ~~~~~~m~~~~~t~Lr~~~~~----------~~~~hsa-------av~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~ 64 (825)
T KOG0267|consen 2 PGMEFLMKTKRATKLRVWDTR----------EFVAHSA-------AVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT 64 (825)
T ss_pred Ccccccceeeeeeccccccch----------hhhhhhh-------hhceeeeeccceeeccCCCceeeccccccCCchhh
Confidence 334566666666778888765 2345665 555555 44455555 667777789877643321
Q ss_pred cCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEE
Q 043350 190 AGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMI 269 (1133)
Q Consensus 190 ~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~ 269 (1133)
.+.+|.++|-||.|++...+|++|+.+|+|++||+.. .+.+.+|.||...+.+|.
T Consensus 65 -----------------S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee--------Ak~vrtLtgh~~~~~sv~ 119 (825)
T KOG0267|consen 65 -----------------SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE--------AKIVRTLTGHLLNITSVD 119 (825)
T ss_pred -----------------eeeccCCcceeeecCcchhhhcccccCCceeeeehhh--------hhhhhhhhccccCcceee
Confidence 2567889999999999999999999999999999985 266779999999999999
Q ss_pred EeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEE
Q 043350 270 FSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVW 348 (1133)
Q Consensus 270 fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vw 348 (1133)
|+|.|. .++||.|+.+++||.+
T Consensus 120 f~P~~~~~a~gStdtd~~iwD~R--------------------------------------------------------- 142 (825)
T KOG0267|consen 120 FHPYGEFFASGSTDTDLKIWDIR--------------------------------------------------------- 142 (825)
T ss_pred eccceEEeccccccccceehhhh---------------------------------------------------------
Confidence 999999 8889888888888874
Q ss_pred ecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEE
Q 043350 349 CAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVA 428 (1133)
Q Consensus 349 ss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~ 428 (1133)
...|...+.+|...+..+.
T Consensus 143 -------------k~Gc~~~~~s~~~vv~~l~------------------------------------------------ 161 (825)
T KOG0267|consen 143 -------------KKGCSHTYKSHTRVVDVLR------------------------------------------------ 161 (825)
T ss_pred -------------ccCceeeecCCcceeEEEe------------------------------------------------
Confidence 2223334444444444444
Q ss_pred EecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEE
Q 043350 429 TRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQIL 504 (1133)
Q Consensus 429 ~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vw 504 (1133)
|+|+| ++++|++|.++++||+ .|+.+.+|..|.+.|.. |+|..-.|++|+.|++|++|
T Consensus 162 ------------------lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~ 223 (825)
T KOG0267|consen 162 ------------------LSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFW 223 (825)
T ss_pred ------------------ecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeee
Confidence 44555 5778888899999999 78999999999999998 88888899999999999999
Q ss_pred eCCC-CcceeeeccccCeEEeeec--ccceeeecc
Q 043350 505 DLDG-NLTASWIAHSSPVLKLAVG--VDHIYSLAA 536 (1133)
Q Consensus 505 d~~g-~~l~~~~~H~~~V~~l~fs--~~~L~S~s~ 536 (1133)
|++. +++.........|.+++|+ +..++++-.
T Consensus 224 dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 224 DLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred ccceeEEeeccCCccCCceeeeecCCceeeecCch
Confidence 9984 5566666678899999999 555555443
No 141
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.71 E-value=4.9e-16 Score=170.51 Aligned_cols=289 Identities=14% Similarity=0.201 Sum_probs=203.2
Q ss_pred ceeeccCCCCeEEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEe
Q 043350 205 PFYESANTSPTMCLMVDCG--NRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGG 280 (1133)
Q Consensus 205 ~~~~~~h~s~V~~la~spd--~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs 280 (1133)
..+...+..+|+|++|+|. -+++|+|..-|+|-+||+.+.+. ....+..+..|.++|.+|.|+|... +++.|
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~----d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS 254 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK----DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS 254 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC----ccCceEEeccCCccccceEecCCChhheeeec
Confidence 3456678889999999993 36899999999999999964221 1244567789999999999999877 99999
Q ss_pred CCCcEEEEeCCCCceeeEeCC--CCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEe
Q 043350 281 EGGVIKIWPWESIEKSLSLKP--EEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLW 358 (1133)
Q Consensus 281 ~DgtI~iWdl~~~~~~l~~~~--~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lW 358 (1133)
.||+|++=|++.......+.. +..+ +-.+ .++..+..+++. ..-|.+.+|
T Consensus 255 yDGtiR~~D~~~~i~e~v~s~~~d~~~---------fs~~----------d~~~e~~~vl~~---------~~~G~f~~i 306 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNISEEVLSLDTDNIW---------FSSL----------DFSAESRSVLFG---------DNVGNFNVI 306 (498)
T ss_pred cCceeeeeeecchhhHHHhhcCcccee---------eeec----------cccCCCccEEEe---------ecccceEEE
Confidence 999999999987433222222 2222 1111 112222222222 233488999
Q ss_pred ecCCCce-eEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccC
Q 043350 359 DARSKEL-LKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVD 437 (1133)
Q Consensus 359 D~~tg~~-l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~ 437 (1133)
|.+++.. ...+..|...|++++++|...+ + ++++|.|++.+.|+.|.++.-. .+ -.+ ...
T Consensus 307 D~R~~~s~~~~~~lh~kKI~sv~~NP~~p~-------~-laT~s~D~T~kIWD~R~l~~K~---sp----~ls----t~~ 367 (498)
T KOG4328|consen 307 DLRTDGSEYENLRLHKKKITSVALNPVCPW-------F-LATASLDQTAKIWDLRQLRGKA---SP----FLS----TLP 367 (498)
T ss_pred EeecCCccchhhhhhhcccceeecCCCCch-------h-eeecccCcceeeeehhhhcCCC---Cc----cee----ccc
Confidence 9997654 6677888889999999997654 1 9999999999988877554311 11 111 357
Q ss_pred CCCCEEEEEECCCC-eEEEEecCCeEEEEeCC----C-CeeEEEec------CCcceeE-EecCCCEEEEEecCCeEEEE
Q 043350 438 DTKRTEAMVLTADG-MIWSGCTNGLLVQWDGN----G-NRVSDILH------HQCAVQC-FCTYGSRMYVGYVSGYLQIL 504 (1133)
Q Consensus 438 h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~----g-~~l~~~~~------h~~~V~~-fs~dg~~Lasgs~DG~I~vw 504 (1133)
|...|.+..|||.+ .|++.+.|..|+|||.. . ..+.++.. |-.+..+ |.|+..++++|-.-..|-|+
T Consensus 368 HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~ 447 (498)
T KOG4328|consen 368 HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVF 447 (498)
T ss_pred ccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEE
Confidence 88999999999999 99999999999999984 1 33333332 2334444 99999999999999999999
Q ss_pred eCCCCc-ceeeeccc-cCeEEe-eec--ccceeee-cccCCeeecc
Q 043350 505 DLDGNL-TASWIAHS-SPVLKL-AVG--VDHIYSL-AAHGGIRGWT 544 (1133)
Q Consensus 505 d~~g~~-l~~~~~H~-~~V~~l-~fs--~~~L~S~-s~Dg~I~lW~ 544 (1133)
|-+++. +.++..-. ..|.++ .|+ +..+++| +..|.|.+|.
T Consensus 448 ~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 448 DGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred cCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 988653 55544433 345554 455 4435555 5567788875
No 142
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=5.8e-16 Score=174.22 Aligned_cols=284 Identities=15% Similarity=0.151 Sum_probs=202.5
Q ss_pred ceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCC
Q 043350 205 PFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEG 282 (1133)
Q Consensus 205 ~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~D 282 (1133)
.+++.+|.+.|.||..+|.|.+|++|+.||+|+||.+.++. ++.++. -.+.|.||+|+|.+. ++.++.+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR--------cvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~ 463 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR--------CVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG 463 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce--------EEEEEe-ecceeEEEEecCCCCceeEEEEec
Confidence 46788999999999999999999999999999999998743 344433 245899999999988 6666666
Q ss_pred CcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCC
Q 043350 283 GVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARS 362 (1133)
Q Consensus 283 gtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~t 362 (1133)
..+.|-+..-+.+......... + ...+.. . ..+..+..|.-..
T Consensus 464 ~~~~ivnp~~G~~~e~~~t~el-l---------------------~~~~~~-------~--------~p~~~~~~W~~~~ 506 (733)
T KOG0650|consen 464 ECVLIVNPIFGDRLEVGPTKEL-L---------------------ASAPNE-------S--------EPDAAVVTWSRAS 506 (733)
T ss_pred CceEEeCccccchhhhcchhhh-h---------------------hcCCCc-------c--------CCcccceeechhh
Confidence 6566655421100000000000 0 000000 0 1233444453331
Q ss_pred ---Cc-eeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccc-----ccc-ccccceeeccCCceEEEEEecC
Q 043350 363 ---KE-LLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPH-----GFL-QRSRNAIMGAADAVRRVATRGA 432 (1133)
Q Consensus 363 ---g~-~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~-----~~~-~~~~~~~~~~~~~V~~v~~~p~ 432 (1133)
++ -++..-.|...|..+.|+..|++ |++...++.-+ .+. .+.+..+....+.+.++.|+|.
T Consensus 507 ~~e~~~~v~~~I~~~k~i~~vtWHrkGDY---------latV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs 577 (733)
T KOG0650|consen 507 LDELEKGVCIVIKHPKSIRQVTWHRKGDY---------LATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPS 577 (733)
T ss_pred hhhhccceEEEEecCCccceeeeecCCce---------EEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCC
Confidence 11 13344457788999999999999 88777665443 222 2233445556677888899886
Q ss_pred Cc-----------------------ccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC--CCCeeEEEecCCcceeE--
Q 043350 433 GA-----------------------FVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG--NGNRVSDILHHQCAVQC-- 484 (1133)
Q Consensus 433 g~-----------------------~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~--~g~~l~~~~~h~~~V~~-- 484 (1133)
.. +.....+|..++++|.| .|+.|+.|+.+..+|+ +.+..+++..|...|.+
T Consensus 578 ~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va 657 (733)
T KOG0650|consen 578 KPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVA 657 (733)
T ss_pred CceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhh
Confidence 54 33455679999999999 9999999999999998 45788999999999998
Q ss_pred EecCCCEEEEEecCCeEEEEeC------CCC----cceeeeccccC----eEEeeec--ccceeeecccCCeeec
Q 043350 485 FCTYGSRMYVGYVSGYLQILDL------DGN----LTASWIAHSSP----VLKLAVG--VDHIYSLAAHGGIRGW 543 (1133)
Q Consensus 485 fs~dg~~Lasgs~DG~I~vwd~------~g~----~l~~~~~H~~~----V~~l~fs--~~~L~S~s~Dg~I~lW 543 (1133)
|++.-.++++|+.||++.|+-- -.+ +++.+++|... |..+.|+ ..+|+|++.||+|++|
T Consensus 658 ~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 658 FHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 7777789999999999999852 122 46788999765 9999999 8899999999999999
No 143
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.71 E-value=8.8e-16 Score=174.24 Aligned_cols=292 Identities=12% Similarity=0.137 Sum_probs=181.0
Q ss_pred CCCEEEEecCCCeEEeccCCCCC-C-CCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCc
Q 043350 114 MVEFIGSGGGTGIFKVPSRAAVH-P-GRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEP 188 (1133)
Q Consensus 114 ~g~~lasgs~dg~irlW~~~~~~-~-g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~ 188 (1133)
....||.+..||.|.+++..... . .+.-+..+..|.. .|..+. .+....|+ +.|.++++||+.+....
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~n-------AifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~ 135 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKN-------AIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV 135 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccc-------eeEeeccCCCceeEEEccCCceeeeeeeccceee
Confidence 34578999999999999976321 1 1111344567877 899999 77444455 88999999999874222
Q ss_pred CcCCCccccCCCCCCCceeeccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCC-------------------CC
Q 043350 189 GAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTLD-------------------DA 248 (1133)
Q Consensus 189 ~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~-------------------~~ 248 (1133)
. .....+|...|.+++|.+ +...+++|+.||.|.|||++.... ..
T Consensus 136 G---------------~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptps 200 (720)
T KOG0321|consen 136 G---------------GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPS 200 (720)
T ss_pred c---------------ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCC
Confidence 1 114567888999999999 667889999999999999863220 00
Q ss_pred CCCcccccccccCCCCeEE---EEEeeCCc-EEEEeC-CCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCcee
Q 043350 249 NNPFKEGLSWQAHRGPVLA---MIFSSQGD-LWSGGE-GGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVT 323 (1133)
Q Consensus 249 ~~~~~~~~~l~gH~~~V~s---l~fsp~g~-L~Sgs~-DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~ 323 (1133)
...-+.+..+.+|...|.+ +.+..|.. |+|+|. |+.|||||++.........+.+..- +.......
T Consensus 201 kp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~---------~~t~skrs 271 (720)
T KOG0321|consen 201 KPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDK---------YPTHSKRS 271 (720)
T ss_pred chhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccC---------ccCcccce
Confidence 1111234456777777766 66666767 999998 9999999999754443333332210 00000000
Q ss_pred eeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCC--ceeEEEecCCcc--eeEEEeCCCCCccccccceEEEEe
Q 043350 324 VNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSK--ELLKVFNIEGHI--ENRVDTQSVQDQPVEDEMKVKFVS 399 (1133)
Q Consensus 324 v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg--~~l~~~~~h~~~--v~~l~~sp~g~~~~e~e~~v~las 399 (1133)
+...+...+..+..+ +.++.|+.|..||+.+- .++..+.++... -..-..+|++.+ +++
T Consensus 272 ~G~~nL~lDssGt~L--------~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~---------l~S 334 (720)
T KOG0321|consen 272 VGQVNLILDSSGTYL--------FASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS---------LLS 334 (720)
T ss_pred eeeEEEEecCCCCeE--------EEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce---------Eec
Confidence 000010011212222 22256999999999843 344455444322 123457899999 999
Q ss_pred eCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC--eEEEEecCCeEEEEeC
Q 043350 400 SNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG--MIWSGCTNGLLVQWDG 467 (1133)
Q Consensus 400 gs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg--~L~sgs~DG~I~vWd~ 467 (1133)
|+.|...+.|....... |--.+.+|...|+++.+.|.. -+++++.|-++++|++
T Consensus 335 gSsd~~ayiw~vs~~e~--------------~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 335 GSSDEQAYIWVVSSPEA--------------PPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred cCCCcceeeeeecCccC--------------ChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence 99999887554321111 001134455555555555444 7888999999999998
No 144
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.70 E-value=3.2e-14 Score=157.53 Aligned_cols=360 Identities=13% Similarity=0.103 Sum_probs=244.2
Q ss_pred ccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE-ec----C-----CcEE
Q 043350 110 PFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA-GQ----E-----CGVR 178 (1133)
Q Consensus 110 ~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla-s~----D-----g~Vr 178 (1133)
-.-|.|+.+.---.-+++.-|.-. . ....-+|.. .|.+++ +|+.-+++ +. + ..||
T Consensus 72 y~lptgE~vyfvA~V~Vl~n~ee~------~-Qr~y~GH~d-------dikc~~vHPdri~vatGQ~ag~~g~~~~phvr 137 (626)
T KOG2106|consen 72 YLLPTGELVYFVAAVGVLYNWEER------S-QRHYLGHND-------DIKCMAVHPDRIRVATGQGAGTSGRPLQPHVR 137 (626)
T ss_pred EEccCccEEEEeccEEEEEeehhh------h-cccccCCCC-------ceEEEeecCCceeeccCcccccCCCcCCCeee
Confidence 347778866544443444444222 2 345678888 999999 99888888 22 2 2599
Q ss_pred EeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC--CCCEEEEE--eCCCeEEEEeCCCCCCCCCCCccc
Q 043350 179 FWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC--GNRLVWTG--HKDGKIRSWKMDQTLDDANNPFKE 254 (1133)
Q Consensus 179 vWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp--d~~~LaSg--s~Dg~V~vWd~~~~~~~~~~~~~~ 254 (1133)
+||..++.. -.+...-...|+|++|++ .|.+|..- +.+..+.|||...+. .
T Consensus 138 iWdsv~L~T-----------------L~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~--------~ 192 (626)
T KOG2106|consen 138 IWDSVTLST-----------------LHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKA--------K 192 (626)
T ss_pred eccccccee-----------------eeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhh--------c
Confidence 999655321 112323345799999998 34444433 345678899987521 2
Q ss_pred ccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCc--eee-Ee-CCCCceEEEEeecceEEEccCceeeecccc
Q 043350 255 GLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIE--KSL-SL-KPEEKHMAALLVERSFIDLRAQVTVNGACS 329 (1133)
Q Consensus 255 ~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~--~~l-~~-~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~ 329 (1133)
....+.-...|....|+|.+. |+.....|.+.+|++++.. +.. .+ .++.+. +..+++
T Consensus 193 ~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~------------------Vl~v~F 254 (626)
T KOG2106|consen 193 LGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKF------------------VLCVTF 254 (626)
T ss_pred cCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceE------------------EEEEEE
Confidence 223344567889999999988 4444456889999988731 111 11 111121 222233
Q ss_pred CCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccc
Q 043350 330 ISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGF 409 (1133)
Q Consensus 330 ~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~ 409 (1133)
..+++++ .+ .++|.|.||+..+.+..+....|.+.|.++..-.+|.+ ++|++|.+|..|
T Consensus 255 ~engdvi---Tg--------DS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl----------lSGgKDRki~~W 313 (626)
T KOG2106|consen 255 LENGDVI---TG--------DSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL----------LSGGKDRKIILW 313 (626)
T ss_pred cCCCCEE---ee--------cCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE----------eecCccceEEec
Confidence 2333322 22 56789999999888888777799999999999999864 569999999866
Q ss_pred ccccc--c--eeeccCCceEEEEEecCCc---------------------ccCCCCCEEEEEECCCC-eEEEEecCCeEE
Q 043350 410 LQRSR--N--AIMGAADAVRRVATRGAGA---------------------FVDDTKRTEAMVLTADG-MIWSGCTNGLLV 463 (1133)
Q Consensus 410 ~~~~~--~--~~~~~~~~V~~v~~~p~g~---------------------~~~h~~~V~sl~~spdg-~L~sgs~DG~I~ 463 (1133)
+.... + .+....+.++.++-...+. ..+|....+.++.+|+. .+++++.|+.++
T Consensus 314 d~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~ 393 (626)
T KOG2106|consen 314 DDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVR 393 (626)
T ss_pred cccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEE
Confidence 53211 1 1223334444443221110 34688889999999999 999999999999
Q ss_pred EEeCCCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCCCcceeeeccccCeEEeeec--ccceeeecccCC
Q 043350 464 QWDGNGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGNLTASWIAHSSPVLKLAVG--VDHIYSLAAHGG 539 (1133)
Q Consensus 464 vWd~~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~ 539 (1133)
+|+ +.+++.+... ..++.| |.|.| .||+|+..|...|.|.+...+.+......+++.|+|+ |.+|+.++.|+.
T Consensus 394 lW~-~~k~~wt~~~-~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~ 470 (626)
T KOG2106|consen 394 LWN-DHKLEWTKII-EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNH 470 (626)
T ss_pred Ecc-CCceeEEEEe-cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCe
Confidence 999 4455555444 334445 99999 9999999999999999987666666668999999999 999999999999
Q ss_pred eeeccccCCCC
Q 043350 540 IRGWTFTSPSP 550 (1133)
Q Consensus 540 I~lW~l~s~~~ 550 (1133)
|.++-+...+.
T Consensus 471 iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 471 IYIYRVSANGR 481 (626)
T ss_pred EEEEEECCCCc
Confidence 99999876543
No 145
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.69 E-value=1.6e-15 Score=170.63 Aligned_cols=107 Identities=15% Similarity=0.223 Sum_probs=92.1
Q ss_pred CEEEEEECCCC--eEEEEecCCeEEEEeC--CC------CeeEEEecCCcceeE--EecC-CCEEEEEecCCeEEEEeCC
Q 043350 441 RTEAMVLTADG--MIWSGCTNGLLVQWDG--NG------NRVSDILHHQCAVQC--FCTY-GSRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 441 ~V~sl~~spdg--~L~sgs~DG~I~vWd~--~g------~~l~~~~~h~~~V~~--fs~d-g~~Lasgs~DG~I~vwd~~ 507 (1133)
.|+.+.|.|-. .|+.++.||.|++|.+ +| ..-..+..|...|++ |+|- .+.|++++.|.+|++||+.
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 36677777755 8999999999999987 33 344667889999999 8885 4689999999999999997
Q ss_pred -CCcceeeeccccCeEEeeec--ccceeeecccCCeeeccccC
Q 043350 508 -GNLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 508 -g~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s 547 (1133)
++....+.+|.+.|.+++|+ |+.++|.+.||+|++++-.+
T Consensus 709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence 46778899999999999999 99999999999999998554
No 146
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.69 E-value=2.2e-16 Score=182.59 Aligned_cols=230 Identities=17% Similarity=0.194 Sum_probs=167.6
Q ss_pred CCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE--eCCCCeEE--ecCCcEEEeeCCCCCC
Q 043350 112 QPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA--CTDTQLWA--GQECGVRFWNLEDSYE 187 (1133)
Q Consensus 112 ~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~--s~dg~lla--s~Dg~VrvWdl~~~~~ 187 (1133)
+-+.++|||++..|.|-+||+........ +..+..|.. .+..+. +....+|+ |+||+|++||++....
T Consensus 97 ~~~~NlIAT~s~nG~i~vWdlnk~~rnk~-l~~f~EH~R-------s~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 97 QLYSNLIATCSTNGVISVWDLNKSIRNKL-LTVFNEHER-------SANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred cchhhhheeecCCCcEEEEecCccccchh-hhHhhhhcc-------ceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 55678999999999999999873211222 557788888 889888 45666666 8999999999986322
Q ss_pred cCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeE
Q 043350 188 PGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVL 266 (1133)
Q Consensus 188 ~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~ 266 (1133)
.. .+.+....|..|.|+| .+..++++...|.+.+||++. +-+....+.+|.++|.
T Consensus 169 ~~-----------------t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRq-------p~r~~~k~~AH~GpV~ 224 (839)
T KOG0269|consen 169 KS-----------------TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQ-------PDRCEKKLTAHNGPVL 224 (839)
T ss_pred cc-----------------cccccchhhhceeeccCCCceEEEecCCceEEEeeccC-------chhHHHHhhcccCceE
Confidence 11 2233455789999999 688999999999999999986 2256678899999999
Q ss_pred EEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCC-eEEEEecCCc
Q 043350 267 AMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTE-IKCMLSDHAR 344 (1133)
Q Consensus 267 sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~-~~~l~S~d~~ 344 (1133)
|+.|+|++. |+|||.|+.|+||++.+.... . ...+.+..+++.+.+.|... .+...+.
T Consensus 225 c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~--------~---------~~tInTiapv~rVkWRP~~~~hLAtcsm--- 284 (839)
T KOG0269|consen 225 CLNWHPNREWLATGGRDKMVKIWDMTDSRAK--------P---------KHTINTIAPVGRVKWRPARSYHLATCSM--- 284 (839)
T ss_pred EEeecCCCceeeecCCCccEEEEeccCCCcc--------c---------eeEEeecceeeeeeeccCccchhhhhhc---
Confidence 999999888 999999999999999752100 0 11111111222222223222 2222333
Q ss_pred eEEEecCCCceeEeecCCC-ceeEEEecCCcceeEEEeCC-CCCccccccceEEEEeeCCCCccc
Q 043350 345 ARVWCAQPLSFSLWDARSK-ELLKVFNIEGHIENRVDTQS-VQDQPVEDEMKVKFVSSNKKEKPH 407 (1133)
Q Consensus 345 i~vwss~d~~I~lWD~~tg-~~l~~~~~h~~~v~~l~~sp-~g~~~~e~e~~v~lasgs~Dg~i~ 407 (1133)
..|..|+|||++.. -+..+|..|...++.++|.. +... +.++++|+++.
T Consensus 285 -----v~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~---------l~s~sKD~tv~ 335 (839)
T KOG0269|consen 285 -----VVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRIN---------LWSCSKDGTVL 335 (839)
T ss_pred -----cccceEEEEeeccccccceeeeccCccccceeccCCCcee---------eEeecCccHHH
Confidence 57899999999844 46678999999999999977 3445 88999999985
No 147
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.69 E-value=1.8e-15 Score=166.53 Aligned_cols=289 Identities=12% Similarity=0.145 Sum_probs=187.6
Q ss_pred ecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE---ecCCcEEEeeCCCCCCcCcCCCccc
Q 043350 121 GGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA---GQECGVRFWNLEDSYEPGAGIGGRV 196 (1133)
Q Consensus 121 gs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla---s~Dg~VrvWdl~~~~~~~~gh~~~v 196 (1133)
++...+++|||...+. +.+ .+-.|...+ .+..+. .....+++ +.|..+++|.-.+...+.
T Consensus 8 aS~gd~~kl~D~s~~~-~~~---~~~~~t~~p-----g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~V------- 71 (673)
T KOG4378|consen 8 ASTGDKTKLSDFSDLE-TKS---EYVHQTAEP-----GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEV------- 71 (673)
T ss_pred eccCCceEEeeccccc-Ccc---ccccCCCCC-----cceeeeccccceEEEeecCCceeEEEecccCCCCcc-------
Confidence 3344467999976321 222 233333311 467777 43333444 789999999876642221
Q ss_pred cCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCccc-ccccccCCCCeEEEEEeeCCc
Q 043350 197 RRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKE-GLSWQAHRGPVLAMIFSSQGD 275 (1133)
Q Consensus 197 ~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~-~~~l~gH~~~V~sl~fsp~g~ 275 (1133)
|.+.......-.|++......++++|+..++|+|||++. +. ...+++|...|++|.+.....
T Consensus 72 --------p~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~---------kl~hr~lkdh~stvt~v~YN~~De 134 (673)
T KOG4378|consen 72 --------PRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRA---------KLIHRFLKDHQSTVTYVDYNNTDE 134 (673)
T ss_pred --------ceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHH---------HHHhhhccCCcceeEEEEecCCcc
Confidence 212212222445666656678999999999999999986 43 447889999999999998878
Q ss_pred -EEEEeCCCcEEEEeCCCCceeeEeCCC-CceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCC
Q 043350 276 -LWSGGEGGVIKIWPWESIEKSLSLKPE-EKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPL 353 (1133)
Q Consensus 276 -L~Sgs~DgtI~iWdl~~~~~~l~~~~~-~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~ 353 (1133)
|++++..|-|.|..+.+..+.-.+..+ +.. +- .+++. + ....++.+. +.+|
T Consensus 135 yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqs-vR------ll~ys-----------~-skr~lL~~a--------sd~G 187 (673)
T KOG4378|consen 135 YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQS-VR------LLRYS-----------P-SKRFLLSIA--------SDKG 187 (673)
T ss_pred eeEEeccCCcEEEEecccCccccceecCCCCe-EE------Eeecc-----------c-ccceeeEee--------ccCC
Confidence 999999999999999886555444333 221 00 12221 2 222334444 6789
Q ss_pred ceeEeecCCCceeEEE-ecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecC
Q 043350 354 SFSLWDARSKELLKVF-NIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGA 432 (1133)
Q Consensus 354 ~I~lWD~~tg~~l~~~-~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~ 432 (1133)
.|.+||+....++..+ ..|..+...++|+|....
T Consensus 188 ~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~--------------------------------------------- 222 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEA--------------------------------------------- 222 (673)
T ss_pred eEEEEeccCCCcccchhhhccCCcCcceecCCccc---------------------------------------------
Confidence 9999998765554332 334444445555443332
Q ss_pred CcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeCCCCe-eEEEe-cCCcceeEEecCCCEEEEEecCCeEEEEeCCC--
Q 043350 433 GAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGNGNR-VSDIL-HHQCAVQCFCTYGSRMYVGYVSGYLQILDLDG-- 508 (1133)
Q Consensus 433 g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~g~~-l~~~~-~h~~~V~~fs~dg~~Lasgs~DG~I~vwd~~g-- 508 (1133)
.|++.+.|..|.+||...+. ...+. .|.-.-..|+++|.+|++|+..|.|..||+.+
T Consensus 223 -------------------l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 223 -------------------LLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred -------------------eEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 57777888888888884432 22222 24444445999999999999999999999986
Q ss_pred CcceeeeccccCeEEeeec-ccceee
Q 043350 509 NLTASWIAHSSPVLKLAVG-VDHIYS 533 (1133)
Q Consensus 509 ~~l~~~~~H~~~V~~l~fs-~~~L~S 533 (1133)
.++....+|...|++|+|- ...+++
T Consensus 284 ~Pv~v~sah~~sVt~vafq~s~tvlt 309 (673)
T KOG4378|consen 284 APVAVRSAHDASVTRVAFQPSPTVLT 309 (673)
T ss_pred CCceEeeecccceeEEEeeecceeee
Confidence 4788899999999999998 435554
No 148
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=3.9e-15 Score=156.11 Aligned_cols=283 Identities=11% Similarity=0.086 Sum_probs=179.5
Q ss_pred CcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE--e-CCCCeEE--ecCCcEEEe
Q 043350 106 QQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA--C-TDTQLWA--GQECGVRFW 180 (1133)
Q Consensus 106 ~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~--s-~dg~lla--s~Dg~VrvW 180 (1133)
++.++|++.|+.+||++.|++++|||.+.....-......+.|.+ .|+.|. + .-|+.+| +.|++++||
T Consensus 16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~-------Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDG-------SIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred eeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCC-------cEEEEEecCccccceEEEEecCCceeee
Confidence 445889999999999999999999996422112222457889999 999998 4 4699999 999999999
Q ss_pred eCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC--CCCEEEEEeCCCeEEEEeCCCCCCCCCCCccccccc
Q 043350 181 NLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC--GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSW 258 (1133)
Q Consensus 181 dl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp--d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l 258 (1133)
.-+.. ....|+ .+-..-..+.-..+.|+.+.|.| -|-.||+++.||++|||+.-.... -..+.....+
T Consensus 89 EE~~~--~~~~~~------~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n--Ls~W~Lq~Ei 158 (361)
T KOG2445|consen 89 EEQEK--SEEAHG------RRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN--LSQWTLQHEI 158 (361)
T ss_pred eeccc--cccccc------ceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccc--cccchhhhhh
Confidence 86431 111222 01111223444577899999999 688899999999999999754221 1222333333
Q ss_pred c-------cCCCCeEEEEEeeCC---c-EEEEeCC-----CcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCce
Q 043350 259 Q-------AHRGPVLAMIFSSQG---D-LWSGGEG-----GVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQV 322 (1133)
Q Consensus 259 ~-------gH~~~V~sl~fsp~g---~-L~Sgs~D-----gtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~ 322 (1133)
+ .|..+..||.|+|.- . |+.|+.+ +.++||..... +
T Consensus 159 ~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~---------~------------------- 210 (361)
T KOG2445|consen 159 QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNEN---------G------------------- 210 (361)
T ss_pred hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCC---------c-------------------
Confidence 3 567788899998652 2 5555443 24555543210 0
Q ss_pred eeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCC
Q 043350 323 TVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNK 402 (1133)
Q Consensus 323 ~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~ 402 (1133)
+.-..+.++.+|..+|+.++|.|+-...+ .+ ||+++.
T Consensus 211 --------------------------------------rKw~kva~L~d~~dpI~di~wAPn~Gr~y----~~-lAvA~k 247 (361)
T KOG2445|consen 211 --------------------------------------RKWLKVAELPDHTDPIRDISWAPNIGRSY----HL-LAVATK 247 (361)
T ss_pred --------------------------------------ceeeeehhcCCCCCcceeeeeccccCCce----ee-EEEeec
Confidence 11123345678999999999999743211 12 999999
Q ss_pred CCccccccccccce-ee----ccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCCC----Cee
Q 043350 403 KEKPHGFLQRSRNA-IM----GAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGNG----NRV 472 (1133)
Q Consensus 403 Dg~i~~~~~~~~~~-~~----~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g----~~l 472 (1133)
|| |+.|..+.... +. ........+....-+.+.+|++.|+.+.+.-.| .|.+.+.||.|++|..+- +|.
T Consensus 248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~ 326 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCT 326 (361)
T ss_pred Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheee
Confidence 99 76444332110 00 001111112222223467888888888888888 888888899999996622 455
Q ss_pred EEEec
Q 043350 473 SDILH 477 (1133)
Q Consensus 473 ~~~~~ 477 (1133)
..+..
T Consensus 327 sv~~~ 331 (361)
T KOG2445|consen 327 SVLKA 331 (361)
T ss_pred eEEec
Confidence 44444
No 149
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.68 E-value=3.8e-14 Score=159.94 Aligned_cols=283 Identities=12% Similarity=0.073 Sum_probs=171.1
Q ss_pred CEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeE-E--ecCCcEEEeeCCCCCCcCcC
Q 043350 116 EFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLW-A--GQECGVRFWNLEDSYEPGAG 191 (1133)
Q Consensus 116 ~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~ll-a--s~Dg~VrvWdl~~~~~~~~g 191 (1133)
..+++++.|+.+++|+..+ ++. ...+..|.. +..++ ++++..+ + +.++.|++||..+.....
T Consensus 2 ~~~~s~~~d~~v~~~d~~t---~~~-~~~~~~~~~--------~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~-- 67 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTAT---LEV-TRTFPVGQR--------PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIG-- 67 (300)
T ss_pred cEEEEecCCCEEEEEECCC---Cce-EEEEECCCC--------CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEE--
Confidence 4688999999999999873 444 666665543 45567 8888765 4 568899999987632110
Q ss_pred CCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEE-EeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEE
Q 043350 192 IGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWT-GHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIF 270 (1133)
Q Consensus 192 h~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaS-gs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~f 270 (1133)
....+. .+..++|+|+++.+++ ++.|+.|++||+... +.+..+. +...+.+++|
T Consensus 68 ---------------~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~--------~~~~~~~-~~~~~~~~~~ 122 (300)
T TIGR03866 68 ---------------TLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETR--------KVLAEIP-VGVEPEGMAV 122 (300)
T ss_pred ---------------eccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCC--------eEEeEee-CCCCcceEEE
Confidence 011122 2467889999987755 456899999999861 2222333 2345688999
Q ss_pred eeCCc-EEEEeCCC-cEEEEeCCCCceeeEe-CCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEE
Q 043350 271 SSQGD-LWSGGEGG-VIKIWPWESIEKSLSL-KPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARV 347 (1133)
Q Consensus 271 sp~g~-L~Sgs~Dg-tI~iWdl~~~~~~l~~-~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~v 347 (1133)
+|+|. +++++.++ .+.+||..+....... ...... ...+. +++. .+++++
T Consensus 123 ~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---------~~~~s-----------~dg~-~l~~~~------ 175 (300)
T TIGR03866 123 SPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPR---------FAEFT-----------ADGK-ELWVSS------ 175 (300)
T ss_pred CCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCcc---------EEEEC-----------CCCC-EEEEEc------
Confidence 99999 88887765 5677787653211100 000000 00110 1111 122222
Q ss_pred EecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEE
Q 043350 348 WCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRV 427 (1133)
Q Consensus 348 wss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v 427 (1133)
..++.|.+||+.+++.+..+..+...+ .+. .
T Consensus 176 --~~~~~v~i~d~~~~~~~~~~~~~~~~~-----~~~--------------------~---------------------- 206 (300)
T TIGR03866 176 --EIGGTVSVIDVATRKVIKKITFEIPGV-----HPE--------------------A---------------------- 206 (300)
T ss_pred --CCCCEEEEEEcCcceeeeeeeeccccc-----ccc--------------------c----------------------
Confidence 457899999999887666553221000 000 0
Q ss_pred EEecCCcccCCCCCEEEEEECCCC-eE-EEEecCCeEEEEeCC-CCeeEEEecCCcceeE--EecCCCEEEEEe-cCCeE
Q 043350 428 ATRGAGAFVDDTKRTEAMVLTADG-MI-WSGCTNGLLVQWDGN-GNRVSDILHHQCAVQC--FCTYGSRMYVGY-VSGYL 501 (1133)
Q Consensus 428 ~~~p~g~~~~h~~~V~sl~~spdg-~L-~sgs~DG~I~vWd~~-g~~l~~~~~h~~~V~~--fs~dg~~Lasgs-~DG~I 501 (1133)
.....++++|++ .+ ++.+.++.|.+||.. ++.+..+. +...+.+ |+|+|++|++++ .+|.|
T Consensus 207 ------------~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i 273 (300)
T TIGR03866 207 ------------VQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDV 273 (300)
T ss_pred ------------CCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeE
Confidence 001124466777 43 344556789999994 45544443 3335555 999999998864 68999
Q ss_pred EEEeCCC-CcceeeeccccCeEEeeec
Q 043350 502 QILDLDG-NLTASWIAHSSPVLKLAVG 527 (1133)
Q Consensus 502 ~vwd~~g-~~l~~~~~H~~~V~~l~fs 527 (1133)
++||+.+ +++..+... ...++++++
T Consensus 274 ~v~d~~~~~~~~~~~~~-~~~~~~~~~ 299 (300)
T TIGR03866 274 SVIDVAALKVIKSIKVG-RLPWGVVVR 299 (300)
T ss_pred EEEECCCCcEEEEEEcc-cccceeEeC
Confidence 9999985 566777654 334777653
No 150
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=4.7e-15 Score=155.60 Aligned_cols=254 Identities=15% Similarity=0.226 Sum_probs=178.1
Q ss_pred eEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCC
Q 043350 215 TMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESI 293 (1133)
Q Consensus 215 V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~ 293 (1133)
..|+.|++.|.+||+|..||.|.|||+.+ +.....+.+|..+|++++||++|+ |+|+|.|..|++||+..+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T--------~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g 97 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDT--------FRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG 97 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccc--------cchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC
Confidence 78999999999999999999999999987 345568899999999999999999 999999999999999873
Q ss_pred -----------ceeeEeCCCCceEEEE-eecce--EEEccCcee----------eec--cccCCCCCeEEEEecCCceEE
Q 043350 294 -----------EKSLSLKPEEKHMAAL-LVERS--FIDLRAQVT----------VNG--ACSISSTEIKCMLSDHARARV 347 (1133)
Q Consensus 294 -----------~~~l~~~~~~~~l~s~-~~d~s--~~d~~~~~~----------v~~--~~~~~~~~~~~l~S~d~~i~v 347 (1133)
+....++|.....+.. ..+.+ ++++..... .+. -+...+..+.++.++
T Consensus 98 s~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitG------ 171 (405)
T KOG1273|consen 98 SPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITG------ 171 (405)
T ss_pred CceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEe------
Confidence 2233455554433222 22222 445543210 000 011123344444455
Q ss_pred EecCCCceeEeecCCCceeEEEecCC-cceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccce---------e
Q 043350 348 WCAQPLSFSLWDARSKELLKVFNIEG-HIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNA---------I 417 (1133)
Q Consensus 348 wss~d~~I~lWD~~tg~~l~~~~~h~-~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~---------~ 417 (1133)
...|.+.++|..+-+++..+.... +.|..+.++..+++ ++.-+.|..|+.+..+.+-. .
T Consensus 172 --tsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~---------liiNtsDRvIR~ye~~di~~~~r~~e~e~~ 240 (405)
T KOG1273|consen 172 --TSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRF---------LIINTSDRVIRTYEISDIDDEGRDGEVEPE 240 (405)
T ss_pred --cCcceEEEEecchheeeeeeeechheeeeEEEEeccCcE---------EEEecCCceEEEEehhhhcccCccCCcChh
Confidence 678999999999999999988777 77899999999999 99999999998443331111 0
Q ss_pred eccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEe-cCCeEEEEeC-CCCeeEEEecCCccee-E--EecCCCE
Q 043350 418 MGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGC-TNGLLVQWDG-NGNRVSDILHHQCAVQ-C--FCTYGSR 491 (1133)
Q Consensus 418 ~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs-~DG~I~vWd~-~g~~l~~~~~h~~~V~-~--fs~dg~~ 491 (1133)
...++-|..+.|. +++|+.+| +++.|+ .-..+++|.. .|.+++.+.+..+.-. . |.|--..
T Consensus 241 ~K~qDvVNk~~Wk-------------~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~ 307 (405)
T KOG1273|consen 241 HKLQDVVNKLQWK-------------KCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPI 307 (405)
T ss_pred HHHHHHHhhhhhh-------------heeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceee
Confidence 1112334444443 67789999 666655 3456999988 7788888877653333 2 6666666
Q ss_pred EEEEecCCeEEEEeCC
Q 043350 492 MYVGYVSGYLQILDLD 507 (1133)
Q Consensus 492 Lasgs~DG~I~vwd~~ 507 (1133)
|++- ..|.|++|...
T Consensus 308 i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 308 IASI-ASGVVYIWAVV 322 (405)
T ss_pred eeec-cCCceEEEEee
Confidence 6655 77889999854
No 151
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=7.1e-15 Score=161.51 Aligned_cols=276 Identities=14% Similarity=0.205 Sum_probs=200.1
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEe
Q 043350 212 TSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWP 289 (1133)
Q Consensus 212 ~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWd 289 (1133)
.++|+||.|+|...+|++|+.||+++||.+++..+ ..++.+.--.-+|.+.+|.|+|. ++++|.-..+..||
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N------~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD 286 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN------PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD 286 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccC------hhheeeeeccCccceeeecCCCceEEEecccceEEEEee
Confidence 45899999999999999999999999999997333 34555555578999999999998 99999999999999
Q ss_pred CCCC-cee---eEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCce
Q 043350 290 WESI-EKS---LSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKEL 365 (1133)
Q Consensus 290 l~~~-~~~---l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~ 365 (1133)
+.+. +.. +...+ .+. -..+-++.++...+..+..|.|.|--..++++
T Consensus 287 le~ak~~k~~~~~g~e-~~~----------------------------~e~FeVShd~~fia~~G~~G~I~lLhakT~el 337 (514)
T KOG2055|consen 287 LETAKVTKLKPPYGVE-EKS----------------------------MERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL 337 (514)
T ss_pred ccccccccccCCCCcc-cch----------------------------hheeEecCCCCeEEEcccCceEEeehhhhhhh
Confidence 9862 111 11111 000 00111222222222337788888888899999
Q ss_pred eEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEE
Q 043350 366 LKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAM 445 (1133)
Q Consensus 366 l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl 445 (1133)
+.++... +.|..+.|+.++.. |++.+.+|.|..|+.+....+. .|.-+|. -.-+++
T Consensus 338 i~s~Kie-G~v~~~~fsSdsk~---------l~~~~~~GeV~v~nl~~~~~~~---------rf~D~G~-----v~gts~ 393 (514)
T KOG2055|consen 338 ITSFKIE-GVVSDFTFSSDSKE---------LLASGGTGEVYVWNLRQNSCLH---------RFVDDGS-----VHGTSL 393 (514)
T ss_pred hheeeec-cEEeeEEEecCCcE---------EEEEcCCceEEEEecCCcceEE---------EEeecCc-----cceeee
Confidence 9988764 46889999999988 8899999988766654332211 1111111 123567
Q ss_pred EECCCC-eEEEEecCCeEEEEeCCC-------CeeEEEecCCcceeE--EecCCCEEEEEe--cCCeEEEEeCCC-Ccce
Q 043350 446 VLTADG-MIWSGCTNGLLVQWDGNG-------NRVSDILHHQCAVQC--FCTYGSRMYVGY--VSGYLQILDLDG-NLTA 512 (1133)
Q Consensus 446 ~~spdg-~L~sgs~DG~I~vWd~~g-------~~l~~~~~h~~~V~~--fs~dg~~Lasgs--~DG~I~vwd~~g-~~l~ 512 (1133)
+.+++| +|++|+..|.|.|||.+. +++..+..-...|++ |++|++.||.+| .+..+++--+-. ....
T Consensus 394 ~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFs 473 (514)
T KOG2055|consen 394 CISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFS 473 (514)
T ss_pred eecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeec
Confidence 788999 999999999999999632 566666666677887 999999999988 467888877653 3344
Q ss_pred eeecc---ccCeEEeeec--ccceeeecccCCeeecccc
Q 043350 513 SWIAH---SSPVLKLAVG--VDHIYSLAAHGGIRGWTFT 546 (1133)
Q Consensus 513 ~~~~H---~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~ 546 (1133)
.|..- -+.|++|+|+ +.+++.|-.+|.|.+|.+.
T Consensus 474 NfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 474 NFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 44433 3578999999 8899999999999999864
No 152
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.65 E-value=5.2e-14 Score=158.83 Aligned_cols=261 Identities=12% Similarity=0.114 Sum_probs=167.8
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-E-EEEeCCCcEEEEeCCCCceeeEeCCC
Q 043350 225 RLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-L-WSGGEGGVIKIWPWESIEKSLSLKPE 302 (1133)
Q Consensus 225 ~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L-~Sgs~DgtI~iWdl~~~~~~l~~~~~ 302 (1133)
.+++|++.|+.|++||+..+ +....+..|. .+.+++|+|+|. + ++++.++.|++||..+......+...
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~--------~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 72 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL--------EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG 72 (300)
T ss_pred cEEEEecCCCEEEEEECCCC--------ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC
Confidence 57899999999999998751 3344555553 467899999998 5 67788999999998763221111110
Q ss_pred CceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeC
Q 043350 303 EKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQ 382 (1133)
Q Consensus 303 ~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~s 382 (1133)
.. ...+...+.+. .+++++ ..++.+.+||+.+++.+..+... ..+..++++
T Consensus 73 ~~-------------------~~~~~~~~~g~-~l~~~~--------~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~ 123 (300)
T TIGR03866 73 PD-------------------PELFALHPNGK-ILYIAN--------EDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVS 123 (300)
T ss_pred CC-------------------ccEEEECCCCC-EEEEEc--------CCCCeEEEEECCCCeEEeEeeCC-CCcceEEEC
Confidence 00 00011112222 222222 56789999999998888777643 345789999
Q ss_pred CCCCccccccceEEEEeeCCCCccc-cccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEE-EEecC
Q 043350 383 SVQDQPVEDEMKVKFVSSNKKEKPH-GFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIW-SGCTN 459 (1133)
Q Consensus 383 p~g~~~~e~e~~v~lasgs~Dg~i~-~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~-sgs~D 459 (1133)
|++.+ +++++.++... .++...... +..+ . .......+.|++++ .|+ ++..+
T Consensus 124 ~dg~~---------l~~~~~~~~~~~~~d~~~~~~-------~~~~-~--------~~~~~~~~~~s~dg~~l~~~~~~~ 178 (300)
T TIGR03866 124 PDGKI---------VVNTSETTNMAHFIDTKTYEI-------VDNV-L--------VDQRPRFAEFTADGKELWVSSEIG 178 (300)
T ss_pred CCCCE---------EEEEecCCCeEEEEeCCCCeE-------EEEE-E--------cCCCccEEEECCCCCEEEEEcCCC
Confidence 99998 88887765432 222211110 0001 0 11234568899999 665 44569
Q ss_pred CeEEEEeC-CCCeeEEEecCC-----cce----eEEecCCCEEEEE-ecCCeEEEEeCCC-CcceeeeccccCeEEeeec
Q 043350 460 GLLVQWDG-NGNRVSDILHHQ-----CAV----QCFCTYGSRMYVG-YVSGYLQILDLDG-NLTASWIAHSSPVLKLAVG 527 (1133)
Q Consensus 460 G~I~vWd~-~g~~l~~~~~h~-----~~V----~~fs~dg~~Lasg-s~DG~I~vwd~~g-~~l~~~~~H~~~V~~l~fs 527 (1133)
|.|++||. +++++..+..+. ..+ .+|+|+|++++++ +.++.|.+||+.. +.+.. ..+...+.+++|+
T Consensus 179 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~ 257 (300)
T TIGR03866 179 GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDY-LLVGQRVWQLAFT 257 (300)
T ss_pred CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE-EEeCCCcceEEEC
Confidence 99999999 556666554321 111 2289999986554 4577899999974 33333 3455678999998
Q ss_pred --ccceeee-cccCCeeeccccCCC
Q 043350 528 --VDHIYSL-AAHGGIRGWTFTSPS 549 (1133)
Q Consensus 528 --~~~L~S~-s~Dg~I~lW~l~s~~ 549 (1133)
+++|+++ +.+|.|++||+....
T Consensus 258 ~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 258 PDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCCc
Confidence 7888876 569999999987643
No 153
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.65 E-value=4.3e-15 Score=162.79 Aligned_cols=203 Identities=15% Similarity=0.192 Sum_probs=140.4
Q ss_pred eeccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCC
Q 043350 207 YESANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGG 283 (1133)
Q Consensus 207 ~~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~Dg 283 (1133)
..++|+..|..|+|+. -.+.|||||.|.+|++||+..+ ++..++..|.+.|.++.|+|... |++||.|+
T Consensus 238 ~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g--------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~ 309 (463)
T KOG0270|consen 238 SASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG--------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDG 309 (463)
T ss_pred ccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC--------CcceehhhcCCceeEEEecCCCceEEEeccccc
Confidence 4567888999999988 4678999999999999999973 44556778999999999999866 99999999
Q ss_pred cEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCC-
Q 043350 284 VIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARS- 362 (1133)
Q Consensus 284 tI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~t- 362 (1133)
+|.+.|.+... .....+-+.+..++..|+.. ....+ .++ ..||+++-+|+|.
T Consensus 310 ~V~l~D~R~~~-----~s~~~wk~~g~VEkv~w~~~-------------se~~f-~~~--------tddG~v~~~D~R~~ 362 (463)
T KOG0270|consen 310 TVALKDCRDPS-----NSGKEWKFDGEVEKVAWDPH-------------SENSF-FVS--------TDDGTVYYFDIRNP 362 (463)
T ss_pred eEEeeeccCcc-----ccCceEEeccceEEEEecCC-------------CceeE-EEe--------cCCceEEeeecCCC
Confidence 99999998410 01111112222222233332 22222 223 5689999999984
Q ss_pred CceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCE
Q 043350 363 KELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRT 442 (1133)
Q Consensus 363 g~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V 442 (1133)
++++.+++.|.+.|.++++++...
T Consensus 363 ~~~vwt~~AHd~~ISgl~~n~~~p-------------------------------------------------------- 386 (463)
T KOG0270|consen 363 GKPVWTLKAHDDEISGLSVNIQTP-------------------------------------------------------- 386 (463)
T ss_pred CCceeEEEeccCCcceEEecCCCC--------------------------------------------------------
Confidence 588888888888887777654322
Q ss_pred EEEEECCCCeEEEEecCCeEEEEeCCCCeeEEEecCC---cceeEEecCC---CEEEEEecCCeEEEEeCCC
Q 043350 443 EAMVLTADGMIWSGCTNGLLVQWDGNGNRVSDILHHQ---CAVQCFCTYG---SRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 443 ~sl~~spdg~L~sgs~DG~I~vWd~~g~~l~~~~~h~---~~V~~fs~dg---~~Lasgs~DG~I~vwd~~g 508 (1133)
+++++++.|+.|++|++.+..-.....|. +...||.++- -.||.|+..+.++|||+..
T Consensus 387 --------~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 387 --------GLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred --------cceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeeccc
Confidence 35788899999999998553222222222 2344544443 3788888888999999763
No 154
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=2.7e-16 Score=180.43 Aligned_cols=220 Identities=15% Similarity=0.196 Sum_probs=172.3
Q ss_pred CCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCc
Q 043350 112 QPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEP 188 (1133)
Q Consensus 112 ~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~ 188 (1133)
-..++.+++|+.|..+.||.... -. ++..|.+|.. +|.+|. .++..+++ +.+|+|++||++.....
T Consensus 37 ~~s~r~~~~Gg~~~k~~L~~i~k---p~-~i~S~~~hes-------pIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v 105 (825)
T KOG0267|consen 37 RKSSRSLVTGGEDEKVNLWAIGK---PN-AITSLTGHES-------PIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV 105 (825)
T ss_pred eccceeeccCCCceeeccccccC---Cc-hhheeeccCC-------cceeeecCcchhhhcccccCCceeeeehhhhhhh
Confidence 45678899999999999998763 22 2567899999 999999 77777777 88999999999863211
Q ss_pred CcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEE
Q 043350 189 GAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAM 268 (1133)
Q Consensus 189 ~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl 268 (1133)
..+.+|..++..|.|+|-+.+.|+|+.|+.+++||.+.. .+...+.+|...|.++
T Consensus 106 -----------------rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~--------Gc~~~~~s~~~vv~~l 160 (825)
T KOG0267|consen 106 -----------------RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK--------GCSHTYKSHTRVVDVL 160 (825)
T ss_pred -----------------hhhhccccCcceeeeccceEEeccccccccceehhhhcc--------CceeeecCCcceeEEE
Confidence 134577789999999999999999999999999999841 5677889999999999
Q ss_pred EEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEE
Q 043350 269 IFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARV 347 (1133)
Q Consensus 269 ~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~v 347 (1133)
+|+|+|. +++|++|.+++|||...+...-.|...+.. ...++ ..+...+++++
T Consensus 161 ~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~---------v~sle-----------~hp~e~Lla~G------ 214 (825)
T KOG0267|consen 161 RLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGK---------VQSLE-----------FHPLEVLLAPG------ 214 (825)
T ss_pred eecCCCceeeccCCcceeeeeccccccccccccccccc---------ccccc-----------cCchhhhhccC------
Confidence 9999999 999999999999999764322222211111 11111 23444566677
Q ss_pred EecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCC
Q 043350 348 WCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKE 404 (1133)
Q Consensus 348 wss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg 404 (1133)
+.|+++++||+++-+.+.........|.++.|+|++.. +++|....
T Consensus 215 --s~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~---------~~~G~q~s 260 (825)
T KOG0267|consen 215 --SSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKI---------VLSGEQIS 260 (825)
T ss_pred --CCCceeeeeccceeEEeeccCCccCCceeeeecCCcee---------eecCchhh
Confidence 89999999999999988888777888999999999987 66665543
No 155
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2.3e-14 Score=169.26 Aligned_cols=260 Identities=12% Similarity=0.109 Sum_probs=180.3
Q ss_pred ccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEE
Q 043350 209 SANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKI 287 (1133)
Q Consensus 209 ~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~i 287 (1133)
-.|+..-+.|+|.|+|..|.+++.||.|++|+..... .+..++.-|...|.+++-. +. |++|+.+++|.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-------e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~ 80 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-------EEPETIDISGELVSSIACY--SNHFLTGSEQNTVLR 80 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-------cCCchhhccCceeEEEeec--ccceEEeeccceEEE
Confidence 3688889999999999999999999999999976521 1122333377888888753 44 999999999999
Q ss_pred EeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeE
Q 043350 288 WPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLK 367 (1133)
Q Consensus 288 Wdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~ 367 (1133)
+.+...... +. ++-. ..+-..+.++++|...+..+.|..|++-++.+....+
T Consensus 81 y~fps~~~~------~i-L~Rf---------------------tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~ 132 (933)
T KOG1274|consen 81 YKFPSGEED------TI-LARF---------------------TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK 132 (933)
T ss_pred eeCCCCCcc------ce-eeee---------------------eccceEEEEecCCcEEEeecCceeEEEEeccccchhe
Confidence 998753111 00 0000 0111112222223333333889999999999999999
Q ss_pred EEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccc---cceeeccCCceEEEEEecCCcccCCCCCEEE
Q 043350 368 VFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRS---RNAIMGAADAVRRVATRGAGAFVDDTKRTEA 444 (1133)
Q Consensus 368 ~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~---~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~s 444 (1133)
.+.+|..+|.++.++|++.+ +|+.+.||+++.|+... ...+.+- .+ +.. ......+..
T Consensus 133 ~lrgh~apVl~l~~~p~~~f---------LAvss~dG~v~iw~~~~~~~~~tl~~v-~k--~n~-------~~~s~i~~~ 193 (933)
T KOG1274|consen 133 VLRGHDAPVLQLSYDPKGNF---------LAVSSCDGKVQIWDLQDGILSKTLTGV-DK--DNE-------FILSRICTR 193 (933)
T ss_pred eecccCCceeeeeEcCCCCE---------EEEEecCceEEEEEcccchhhhhcccC-Cc--ccc-------ccccceeee
Confidence 99999999999999999999 99999999998554331 1111110 00 000 011455777
Q ss_pred EEECCCC-eEEEEecCCeEEEEeCCC-CeeEEEec--CCcceeE--EecCCCEEEEEecCCeEEEEeCCCCcceeeeccc
Q 043350 445 MVLTADG-MIWSGCTNGLLVQWDGNG-NRVSDILH--HQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGNLTASWIAHS 518 (1133)
Q Consensus 445 l~~spdg-~L~sgs~DG~I~vWd~~g-~~l~~~~~--h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~~l~~~~~H~ 518 (1133)
++|+|+| .++..+.|+.|++|+..+ .....+.. +...+.+ |+|.|+|||+++.||.|.|||++.... .-..
T Consensus 194 ~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~---~~~~ 270 (933)
T KOG1274|consen 194 LAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER---HEFK 270 (933)
T ss_pred eeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh---cccc
Confidence 8999997 999999999999999966 55555543 3333444 999999999999999999999985111 1123
Q ss_pred cCeEEeeec
Q 043350 519 SPVLKLAVG 527 (1133)
Q Consensus 519 ~~V~~l~fs 527 (1133)
..|.+++|.
T Consensus 271 ~~Vc~~aw~ 279 (933)
T KOG1274|consen 271 RAVCCEAWK 279 (933)
T ss_pred ceeEEEecC
Confidence 456666665
No 156
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.64 E-value=4.5e-15 Score=159.34 Aligned_cols=219 Identities=21% Similarity=0.238 Sum_probs=160.6
Q ss_pred ccccCCCCeEEEEEeeCCc---EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCC
Q 043350 257 SWQAHRGPVLAMIFSSQGD---LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISST 333 (1133)
Q Consensus 257 ~l~gH~~~V~sl~fsp~g~---L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~ 333 (1133)
...+|.+.|+.+.-++.|+ .++-++.|.|.||++......+.-..-..
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~----------------------------- 196 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEV----------------------------- 196 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccc-----------------------------
Confidence 4467889999999988876 66667899999999865332221110000
Q ss_pred CeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccc
Q 043350 334 EIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRS 413 (1133)
Q Consensus 334 ~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~ 413 (1133)
-+ ...+++.++.+|...-..++|||-..- ++++|..-+.|+.|....
T Consensus 197 ------------------------~~-s~~~Pl~t~~ghk~EGy~LdWSp~~~g--------~LlsGDc~~~I~lw~~~~ 243 (440)
T KOG0302|consen 197 ------------------------KD-SEFRPLFTFNGHKGEGYGLDWSPIKTG--------RLLSGDCVKGIHLWEPST 243 (440)
T ss_pred ------------------------cc-cccCceEEecccCccceeeeccccccc--------ccccCccccceEeeeecc
Confidence 00 345678889999988899999993211 156666666665333221
Q ss_pred cceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC--eEEEEecCCeEEEEeC-CC---CeeEEEecCCcceeE--E
Q 043350 414 RNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG--MIWSGCTNGLLVQWDG-NG---NRVSDILHHQCAVQC--F 485 (1133)
Q Consensus 414 ~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg--~L~sgs~DG~I~vWd~-~g---~~l~~~~~h~~~V~~--f 485 (1133)
.-|.+.- ..|.+|...|..+.+||.. .|++|+.||+|+|||+ .+ .++. .+.|.+.|+- |
T Consensus 244 ---------g~W~vd~---~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISW 310 (440)
T KOG0302|consen 244 ---------GSWKVDQ---RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISW 310 (440)
T ss_pred ---------CceeecC---ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCceeeEEc
Confidence 1111111 1256788889999998876 9999999999999999 44 2333 3789988888 5
Q ss_pred ecCCCEEEEEecCCeEEEEeCC----CCcceeeeccccCeEEeeec---ccceeeecccCCeeeccccCCCC
Q 043350 486 CTYGSRMYVGYVSGYLQILDLD----GNLTASWIAHSSPVLKLAVG---VDHIYSLAAHGGIRGWTFTSPSP 550 (1133)
Q Consensus 486 s~dg~~Lasgs~DG~I~vwd~~----g~~l~~~~~H~~~V~~l~fs---~~~L~S~s~Dg~I~lW~l~s~~~ 550 (1133)
+..-.+||+|+.||+++|||++ ++++..|+.|..+|++|.|+ ...|+++|.|.+|.+||+.....
T Consensus 311 nr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 311 NRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred cCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 5555689999999999999986 47899999999999999999 78899999999999999977443
No 157
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=3.4e-14 Score=156.19 Aligned_cols=280 Identities=13% Similarity=0.134 Sum_probs=194.2
Q ss_pred eEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccC--CCCeEEEEEeCCCC-EEEEEe
Q 043350 158 FLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESAN--TSPTMCLMVDCGNR-LVWTGH 231 (1133)
Q Consensus 158 ~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h--~s~V~~la~spd~~-~LaSgs 231 (1133)
.|++|. .|..+++. +.|+++++|.+++.... .+.+.| ..||.|.+|.|+|. .+++++
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-----------------~lqS~~l~~fPi~~a~f~p~G~~~i~~s~ 277 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-----------------KLQSIHLEKFPIQKAEFAPNGHSVIFTSG 277 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccCh-----------------hheeeeeccCccceeeecCCCceEEEecc
Confidence 577777 77776666 99999999999985432 233333 56999999999999 899999
Q ss_pred CCCeEEEEeCCCCCCCCCCCcccccccccCC-CCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEE
Q 043350 232 KDGKIRSWKMDQTLDDANNPFKEGLSWQAHR-GPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAAL 309 (1133)
Q Consensus 232 ~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~-~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~ 309 (1133)
.-..+..||+....- ..+..+.|+. ..+.....+++++ |+..|..|.|.+....+....-.+.-.+..
T Consensus 278 rrky~ysyDle~ak~------~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v---- 347 (514)
T KOG2055|consen 278 RRKYLYSYDLETAKV------TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVV---- 347 (514)
T ss_pred cceEEEEeecccccc------ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEE----
Confidence 999999999986222 4455566664 4577888999999 999999999999877654333222222221
Q ss_pred eecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcc-eeEEEeCCCCCcc
Q 043350 310 LVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHI-ENRVDTQSVQDQP 388 (1133)
Q Consensus 310 ~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~-v~~l~~sp~g~~~ 388 (1133)
..+ +.+.|++..+.++.+|.|.+||+++..++..+...+.. -++++.++++.+
T Consensus 348 ---------------~~~----------~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~y- 401 (514)
T KOG2055|consen 348 ---------------SDF----------TFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSY- 401 (514)
T ss_pred ---------------eeE----------EEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCce-
Confidence 111 12233333334478899999999999999999876665 458899999999
Q ss_pred ccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEe--cCCeEEEE
Q 043350 389 VEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGC--TNGLLVQW 465 (1133)
Q Consensus 389 ~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs--~DG~I~vW 465 (1133)
+|+||..|.|..+++.....- .... |-..+..-...|.++.|++++ .|+.++ .+..+++-
T Consensus 402 --------lA~GS~~GiVNIYd~~s~~~s-~~Pk--------Pik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLV 464 (514)
T KOG2055|consen 402 --------LATGSDSGIVNIYDGNSCFAS-TNPK--------PIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLV 464 (514)
T ss_pred --------EEeccCcceEEEeccchhhcc-CCCC--------chhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEE
Confidence 999999999865543322210 0011 111133344567788888888 555554 45667776
Q ss_pred eC-CCCeeEEEec---CCcceeE--EecCCCEEEEEecCCeEEEEeCC
Q 043350 466 DG-NGNRVSDILH---HQCAVQC--FCTYGSRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 466 d~-~g~~l~~~~~---h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~ 507 (1133)
.+ +-.....+.. .-+.|+| |+|.|.+||.|..+|.|.+|.+.
T Consensus 465 HvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 465 HVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 66 3233333332 3356777 99999999999999999999864
No 158
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=1.3e-14 Score=163.52 Aligned_cols=281 Identities=14% Similarity=0.137 Sum_probs=189.1
Q ss_pred eeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEE
Q 043350 142 CLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCL 218 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~l 218 (1133)
.+.+++|.+ .|++|. .+.|.+|+ +.||+||||.+.+..+.. ...-.+.|.|+
T Consensus 393 ~lvyrGHtg-------~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr------------------~~~~d~~I~~v 447 (733)
T KOG0650|consen 393 ALVYRGHTG-------LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVR------------------TVQFDSEIRSV 447 (733)
T ss_pred eeeEeccCC-------eEEEEEecCCcceeeecCCCCcEEEEEeecceEEE------------------EEeecceeEEE
Confidence 467889999 999999 89999999 889999999998854321 11123479999
Q ss_pred EEeCCCC--EEEEEeCCCeEEEEeCCCCCC--------------CCCCC------c---------ccccccccCCCCeEE
Q 043350 219 MVDCGNR--LVWTGHKDGKIRSWKMDQTLD--------------DANNP------F---------KEGLSWQAHRGPVLA 267 (1133)
Q Consensus 219 a~spd~~--~LaSgs~Dg~V~vWd~~~~~~--------------~~~~~------~---------~~~~~l~gH~~~V~s 267 (1133)
+|+|.+. +||++-.+. +.|-+..-+.. ....+ + .-+.....|...|+.
T Consensus 448 aw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~ 526 (733)
T KOG0650|consen 448 AWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQ 526 (733)
T ss_pred EecCCCCceeEEEEecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccce
Confidence 9999543 455554443 55555332210 00000 0 011233457889999
Q ss_pred EEEeeCCc-EEEEeCC---CcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCC
Q 043350 268 MIFSSQGD-LWSGGEG---GVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHA 343 (1133)
Q Consensus 268 l~fsp~g~-L~Sgs~D---gtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~ 343 (1133)
|.|+..|+ |+|...+ ..|.|.++........|.... ..+....+|+.....+++
T Consensus 527 vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ksk------------------G~vq~v~FHPs~p~lfVa---- 584 (733)
T KOG0650|consen 527 VTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSK------------------GLVQRVKFHPSKPYLFVA---- 584 (733)
T ss_pred eeeecCCceEEEeccCCCcceEEEEecccccccCchhhcC------------------CceeEEEecCCCceEEEE----
Confidence 99999999 8887654 457777775422111111111 112222333444444443
Q ss_pred ceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccc----cccccceeec
Q 043350 344 RARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGF----LQRSRNAIMG 419 (1133)
Q Consensus 344 ~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~----~~~~~~~~~~ 419 (1133)
.-..|++||+..+++++.+......|..++++|.|.. |+.|+.|+++.-+ ..+..+.++.
T Consensus 585 -------Tq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDn---------li~gs~d~k~~WfDldlsskPyk~lr~ 648 (733)
T KOG0650|consen 585 -------TQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDN---------LILGSYDKKMCWFDLDLSSKPYKTLRL 648 (733)
T ss_pred -------eccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCe---------EEEecCCCeeEEEEcccCcchhHHhhh
Confidence 3478999999999999988888889999999999999 9999999999622 2334444555
Q ss_pred cCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-------CC---CeeEEEecCCcc----eeE
Q 043350 420 AADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-------NG---NRVSDILHHQCA----VQC 484 (1133)
Q Consensus 420 ~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-------~g---~~l~~~~~h~~~----V~~ 484 (1133)
|...++++++ ++.- ++++|+.||++.|+-. +. -+++.+.+|... |..
T Consensus 649 H~~avr~Va~------------------H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd 710 (733)
T KOG0650|consen 649 HEKAVRSVAF------------------HKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLD 710 (733)
T ss_pred hhhhhhhhhh------------------ccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEe
Confidence 5555555554 4555 7999999999999843 11 245677777654 654
Q ss_pred --EecCCCEEEEEecCCeEEEE
Q 043350 485 --FCTYGSRMYVGYVSGYLQIL 504 (1133)
Q Consensus 485 --fs~dg~~Lasgs~DG~I~vw 504 (1133)
|+|..-+|+++++||+|++|
T Consensus 711 ~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 711 TIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ecccCCCceEEecCCCceEEee
Confidence 99999999999999999998
No 159
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.60 E-value=3.6e-14 Score=152.48 Aligned_cols=208 Identities=17% Similarity=0.199 Sum_probs=148.7
Q ss_pred eEEEEE-eC--CCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC-CCCEEEEEe
Q 043350 158 FLRNIA-CT--DTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC-GNRLVWTGH 231 (1133)
Q Consensus 158 ~V~~v~-s~--dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp-d~~~LaSgs 231 (1133)
.+..+. ++ +..+.| +..|.|.||++......+..-+..+.. .+...-+...+|...=+.|+||| ....|+||.
T Consensus 153 ~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~-s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGD 231 (440)
T KOG0302|consen 153 GINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD-SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGD 231 (440)
T ss_pred ccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc-cccCceEEecccCccceeeecccccccccccCc
Confidence 566666 33 445555 889999999998744433222211111 23334577788988899999999 344578888
Q ss_pred CCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCcee--eEe--CCCCce
Q 043350 232 KDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKS--LSL--KPEEKH 305 (1133)
Q Consensus 232 ~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~--l~~--~~~~~~ 305 (1133)
--+.|++|....+... .-...+.+|+..|-.|+|||..+ |+|||.||+|+|||++...+. +.. +.....
T Consensus 232 c~~~I~lw~~~~g~W~-----vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN 306 (440)
T KOG0302|consen 232 CVKGIHLWEPSTGSWK-----VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN 306 (440)
T ss_pred cccceEeeeeccCcee-----ecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence 8899999998764320 11225677999999999999877 999999999999999874222 111 122221
Q ss_pred EEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecC---CCceeEEEecCCcceeEEEeC
Q 043350 306 MAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDAR---SKELLKVFNIEGHIENRVDTQ 382 (1133)
Q Consensus 306 l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~---tg~~l~~~~~h~~~v~~l~~s 382 (1133)
+++++ ....+++++ +.||+++|||+| .++++..|+-|..+|+++.|+
T Consensus 307 ---------VISWn-------------r~~~lLasG--------~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~ 356 (440)
T KOG0302|consen 307 ---------VISWN-------------RREPLLASG--------GDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWH 356 (440)
T ss_pred ---------eEEcc-------------CCcceeeec--------CCCceEEEEEhhhccCCCcceeEEeccCCeeEEEec
Confidence 33332 333478888 899999999999 577899999999999999999
Q ss_pred CCCC-ccccccceEEEEeeCCCCcccccc
Q 043350 383 SVQD-QPVEDEMKVKFVSSNKKEKPHGFL 410 (1133)
Q Consensus 383 p~g~-~~~e~e~~v~lasgs~Dg~i~~~~ 410 (1133)
|... . |++++.|..|..|+
T Consensus 357 p~e~s~---------iaasg~D~QitiWD 376 (440)
T KOG0302|consen 357 PHEDSV---------IAASGEDNQITIWD 376 (440)
T ss_pred cccCce---------EEeccCCCcEEEEE
Confidence 9654 4 88889999886554
No 160
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.60 E-value=3.2e-14 Score=149.96 Aligned_cols=329 Identities=12% Similarity=0.074 Sum_probs=207.1
Q ss_pred hHHHhcCCCCCCCCCcccccceeccCCCCCCCCCccccCCCCCCCCCCCccccccccccccccccCCCCCC-cccCCCCc
Q 043350 5 DKEALAGLSPVPPPRKVHSYSQQLRGTTGSKRPHPVRKHSLDDIPRPTNTCTTTATTTVADHFYDSSDDDL-FSNNSNVI 83 (1133)
Q Consensus 5 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~~~s~s~~ 83 (1133)
+..+.+.+..+-.++..+....+.+.+- +.+..+.-+++.+ .++-++.+...+.+--.++.+.-+.+ ..+. ...
T Consensus 20 e~~~s~n~~y~qg~~~l~g~~~~~stt~-p~nf~kgckWSPD---GSciL~~sedn~l~~~nlP~dlys~~~~~~~-~~~ 94 (406)
T KOG2919|consen 20 EKKKSWNFGYVQGPINLGGNVIAFSTTK-PLNFLKGCKWSPD---GSCILSLSEDNCLNCWNLPFDLYSKKADGPL-NFS 94 (406)
T ss_pred chhccCccceeecceeccCceEEeccCC-chhhhccceeCCC---CceEEeecccCeeeEEecChhhcccCCCCcc-ccc
Confidence 4555566777777877777776666332 3334455667777 45555544333333222221110000 0000 000
Q ss_pred cccccC-CCCcccccCCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEE
Q 043350 84 TTSGVP-VNEDYVCPGPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNI 162 (1133)
Q Consensus 84 ~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v 162 (1133)
.....+ +.+..+ ..-++++-+ .+-.|+..+.|+.+.+.-|++||.-+ |+. ...+++-...+.-+ .-.++
T Consensus 95 ~~~~~r~~eg~tv-ydy~wYs~M---~s~qP~t~l~a~ssr~~PIh~wdaft---G~l-raSy~~ydh~de~t--aAhsL 164 (406)
T KOG2919|consen 95 KHLSYRYQEGETV-YDYCWYSRM---KSDQPSTNLFAVSSRDQPIHLWDAFT---GKL-RASYRAYDHQDEYT--AAHSL 164 (406)
T ss_pred cceeEEeccCCEE-EEEEeeecc---ccCCCccceeeeccccCceeeeeccc---ccc-ccchhhhhhHHhhh--hheeE
Confidence 000000 111111 112233333 45589999999999999999999764 655 55555533322111 23456
Q ss_pred E-eCCCCeEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCcee---eccCCCCeEEEEEeC-CCCEEEEEeCCCeE
Q 043350 163 A-CTDTQLWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFY---ESANTSPTMCLMVDC-GNRLVWTGHKDGKI 236 (1133)
Q Consensus 163 ~-s~dg~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~---~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V 236 (1133)
+ ++||..|. +..+.||+||+...-+... ..+.. ..+..+-+.|++|+| +.++++.|+.-.++
T Consensus 165 ~Fs~DGeqlfaGykrcirvFdt~RpGr~c~------------vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~ 232 (406)
T KOG2919|consen 165 QFSPDGEQLFAGYKRCIRVFDTSRPGRDCP------------VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRV 232 (406)
T ss_pred EecCCCCeEeecccceEEEeeccCCCCCCc------------chhhhhcccccccceeeeeeccCCCCcceeeeccccee
Confidence 6 88886666 9999999999854211100 00001 123456789999999 66699999999999
Q ss_pred EEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeC-CCcEEEEeCCCC---ceeeEeCCCCceEEEEee
Q 043350 237 RSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGE-GGVIKIWPWESI---EKSLSLKPEEKHMAALLV 311 (1133)
Q Consensus 237 ~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~-DgtI~iWdl~~~---~~~l~~~~~~~~l~s~~~ 311 (1133)
-|+.-.. ..++..+.+|.+.|+.++|.++|+ |++|+. |-.|..||++.. +..+.-+-... .
T Consensus 233 giy~~~~--------~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~T------N 298 (406)
T KOG2919|consen 233 GIYNDDG--------RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDT------N 298 (406)
T ss_pred eeEecCC--------CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCc------c
Confidence 8888765 256778889999999999999999 999984 788999999862 22222121100 0
Q ss_pred cceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCC-CceeEEEecCCcceeEEEeCCCCCcccc
Q 043350 312 ERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARS-KELLKVFNIEGHIENRVDTQSVQDQPVE 390 (1133)
Q Consensus 312 d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~t-g~~l~~~~~h~~~v~~l~~sp~g~~~~e 390 (1133)
.|..+|+. +....++++ ..||.|++||+.+ |..+..+..+...++.++++|--.+
T Consensus 299 QRI~FDld-------------~~~~~LasG--------~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpi--- 354 (406)
T KOG2919|consen 299 QRILFDLD-------------PKGEILASG--------DTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPI--- 354 (406)
T ss_pred ceEEEecC-------------CCCceeecc--------CCCccEEEEecCCCCCcccccccccccccceecCcccce---
Confidence 11155555 677788888 8999999999997 8888899999999999999998766
Q ss_pred ccceEEEEeeCCCC
Q 043350 391 DEMKVKFVSSNKKE 404 (1133)
Q Consensus 391 ~e~~v~lasgs~Dg 404 (1133)
+++++...
T Consensus 355 ------latssGqr 362 (406)
T KOG2919|consen 355 ------LATSSGQR 362 (406)
T ss_pred ------eeeccCce
Confidence 66666544
No 161
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=1.3e-14 Score=163.27 Aligned_cols=244 Identities=17% Similarity=0.287 Sum_probs=171.9
Q ss_pred eeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCc
Q 043350 206 FYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGV 284 (1133)
Q Consensus 206 ~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~Dgt 284 (1133)
+....|+..|..++|.|-...|++|+.||++++|+++.........++++.+|.+|.++|.|+++.++++ ++||+-||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 4556688899999999999999999999999999995433333455688999999999999999999999 999999999
Q ss_pred EEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCc
Q 043350 285 IKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKE 364 (1133)
Q Consensus 285 I~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~ 364 (1133)
|+.|++... ..+... +| ...
T Consensus 368 I~~w~~p~n-----~dp~ds-----------------------------------------------------~d--p~v 387 (577)
T KOG0642|consen 368 IRCWNLPPN-----QDPDDS-----------------------------------------------------YD--PSV 387 (577)
T ss_pred eeeeccCCC-----CCcccc-----------------------------------------------------cC--cch
Confidence 999987420 011100 00 112
Q ss_pred eeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccce--eeccC--CceEEEEEecC--------
Q 043350 365 LLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNA--IMGAA--DAVRRVATRGA-------- 432 (1133)
Q Consensus 365 ~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~--~~~~~--~~V~~v~~~p~-------- 432 (1133)
+...+.+|.+.++.+++|+.... |++++.||+++.|....... +.... +...++.+...
T Consensus 388 l~~~l~Ghtdavw~l~~s~~~~~---------Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s 458 (577)
T KOG0642|consen 388 LSGTLLGHTDAVWLLALSSTKDR---------LLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLAS 458 (577)
T ss_pred hccceeccccceeeeeecccccc---------eeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhh
Confidence 23467888888999999998888 89999999998554321111 11110 01111111110
Q ss_pred ----------------------Ccc--cCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--
Q 043350 433 ----------------------GAF--VDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC-- 484 (1133)
Q Consensus 433 ----------------------g~~--~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~-- 484 (1133)
+.. ......+..+...|.+ ..+++..|+.|+++|. .+..+.....|...+++
T Consensus 459 ~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtsla 538 (577)
T KOG0642|consen 459 FRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLA 538 (577)
T ss_pred cccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceeccee
Confidence 001 1112346667677777 8888889999999988 77888888888888888
Q ss_pred EecCCCEEEEEecCCeEEEEeCCCC-cceeeeccc
Q 043350 485 FCTYGSRMYVGYVSGYLQILDLDGN-LTASWIAHS 518 (1133)
Q Consensus 485 fs~dg~~Lasgs~DG~I~vwd~~g~-~l~~~~~H~ 518 (1133)
+.|.|-+|++|+.||.|++|.+..+ .+....+|.
T Consensus 539 i~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 539 IDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred ecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 8888889999999999999988643 344444443
No 162
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.59 E-value=3.3e-14 Score=149.89 Aligned_cols=254 Identities=14% Similarity=0.182 Sum_probs=177.3
Q ss_pred eEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccC-----CCCCeEEE
Q 043350 265 VLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSI-----SSTEIKCM 338 (1133)
Q Consensus 265 V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~-----~~~~~~~l 338 (1133)
..++.|+|||. |++-+.|..+.+|++......- ..+....+. ....+......++...|.. ..++..++
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~--~~~~~~~~~---~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~ 126 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSK--KADGPLNFS---KHLSYRYQEGETVYDYCWYSRMKSDQPSTNLF 126 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhccc--CCCCccccc---cceeEEeccCCEEEEEEeeeccccCCCcccee
Confidence 45679999999 9999999999999986421100 000000000 0002222223344444332 36677777
Q ss_pred EecCCceEEEecCCCceeEeecCCCceeEEEec--CCcc---eeEEEeCCCCCccccccceEEEEeeCCCCccccccc-c
Q 043350 339 LSDHARARVWCAQPLSFSLWDARSKELLKVFNI--EGHI---ENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQ-R 412 (1133)
Q Consensus 339 ~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~--h~~~---v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~-~ 412 (1133)
++. +.+.-|++||..+|++...+.+ |.+. ..+++|+|||.+ |++|. ..+|+.|+. |
T Consensus 127 a~s--------sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeq---------lfaGy-krcirvFdt~R 188 (406)
T KOG2919|consen 127 AVS--------SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQ---------LFAGY-KRCIRVFDTSR 188 (406)
T ss_pred eec--------cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCe---------Eeecc-cceEEEeeccC
Confidence 777 8899999999999999887765 3333 349999999998 76654 455654443 2
Q ss_pred ccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC--eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--Eec
Q 043350 413 SRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG--MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCT 487 (1133)
Q Consensus 413 ~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg--~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~ 487 (1133)
+ +....+....+. |+ .+..+.|.+++|+|-. .++.|+--.++-||.- .+.++..+.+|.+.|+. |++
T Consensus 189 p-----Gr~c~vy~t~~~--~k-~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e 260 (406)
T KOG2919|consen 189 P-----GRDCPVYTTVTK--GK-FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE 260 (406)
T ss_pred C-----CCCCcchhhhhc--cc-ccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc
Confidence 1 111222222222 11 2345668888999977 8999999889999988 45788888899999998 999
Q ss_pred CCCEEEEEe-cCCeEEEEeCC--CCcceeeecccc-CeEEeeec----ccceeeecccCCeeeccccCCC
Q 043350 488 YGSRMYVGY-VSGYLQILDLD--GNLTASWIAHSS-PVLKLAVG----VDHIYSLAAHGGIRGWTFTSPS 549 (1133)
Q Consensus 488 dg~~Lasgs-~DG~I~vwd~~--g~~l~~~~~H~~-~V~~l~fs----~~~L~S~s~Dg~I~lW~l~s~~ 549 (1133)
+|+.|++|. .|-.|..||+. ..++-.+..|.+ .=..+-|+ +++|++++.||.|++||+...+
T Consensus 261 dGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 261 DGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred CcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC
Confidence 999999999 47899999997 467778888876 44556666 9999999999999999988754
No 163
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.4e-14 Score=175.15 Aligned_cols=273 Identities=15% Similarity=0.196 Sum_probs=193.7
Q ss_pred CCeEEEEEeCCCC----EEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEE
Q 043350 213 SPTMCLMVDCGNR----LVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIK 286 (1133)
Q Consensus 213 s~V~~la~spd~~----~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~ 286 (1133)
...++|+|.+.+. +||.|..||.|-+||...... ......+.+...|+++|..+.|++.+. |+||+.||.|.
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~--~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA--NASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhcc--CcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence 3578899988554 499999999999999875211 122355667889999999999999866 99999999999
Q ss_pred EEeCCCCceeeEe----CCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCC
Q 043350 287 IWPWESIEKSLSL----KPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARS 362 (1133)
Q Consensus 287 iWdl~~~~~~l~~----~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~t 362 (1133)
|||+......+.. .+++.. ++.. ......+++++ +.++.+.|||++.
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~---------~lsW------------NrkvqhILAS~--------s~sg~~~iWDlr~ 193 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIK---------CLSW------------NRKVSHILASG--------SPSGRAVIWDLRK 193 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccce---------Eecc------------chhhhHHhhcc--------CCCCCceeccccC
Confidence 9999874333322 122222 1111 12233455666 7788999999998
Q ss_pred CceeEEEecCCc--ceeEEEeCCCCCccccccceEEEEeeCCCCccc---cccccccceeeccCCceEEEEEecCCcccC
Q 043350 363 KELLKVFNIEGH--IENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPH---GFLQRSRNAIMGAADAVRRVATRGAGAFVD 437 (1133)
Q Consensus 363 g~~l~~~~~h~~--~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~---~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~ 437 (1133)
.+.+-.+..+.. .+..++|+|+... ++++++.|...- .|+.|. +.+|...+.+
T Consensus 194 ~~pii~ls~~~~~~~~S~l~WhP~~aT--------ql~~As~dd~~PviqlWDlR~--------------assP~k~~~~ 251 (1049)
T KOG0307|consen 194 KKPIIKLSDTPGRMHCSVLAWHPDHAT--------QLLVASGDDSAPVIQLWDLRF--------------ASSPLKILEG 251 (1049)
T ss_pred CCcccccccCCCccceeeeeeCCCCce--------eeeeecCCCCCceeEeecccc--------------cCCchhhhcc
Confidence 887777765554 3779999998754 267777766542 454331 2233344667
Q ss_pred CCCCEEEEEECCCC--eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCC-CEEEEEecCCeEEEEeCCCCc-
Q 043350 438 DTKRTEAMVLTADG--MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYG-SRMYVGYVSGYLQILDLDGNL- 510 (1133)
Q Consensus 438 h~~~V~sl~~spdg--~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg-~~Lasgs~DG~I~vwd~~g~~- 510 (1133)
|...|.++.+.+.+ +|++++.|+.|.+|+. +|+.+.++.....++.. |+|.. ..+++++-||.|.||.+.+.-
T Consensus 252 H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 252 HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDT 331 (1049)
T ss_pred cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCCc
Confidence 88888888888766 8999999999999999 67899999887777776 88865 488999999999999987521
Q ss_pred --ce-------------ee----eccccCeEEeeec-ccceeeecccC
Q 043350 511 --TA-------------SW----IAHSSPVLKLAVG-VDHIYSLAAHG 538 (1133)
Q Consensus 511 --l~-------------~~----~~H~~~V~~l~fs-~~~L~S~s~Dg 538 (1133)
.. .+ +-|..++....|. |..|++....+
T Consensus 332 ~~~~~~~k~~~a~~~~~~l~~~PkW~~~P~~Gasf~fggkLvtf~~~~ 379 (1049)
T KOG0307|consen 332 DLVQQAQKIAQAAQPSIPLKKPPKWIRRPLDGASFAFGGKLVTFEPES 379 (1049)
T ss_pred cchhhhhhhhhhccccccccCCcceeecccccceeecCceEEEEeccc
Confidence 10 00 1234566566666 77777776666
No 164
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.58 E-value=1.1e-12 Score=148.76 Aligned_cols=241 Identities=12% Similarity=0.114 Sum_probs=169.9
Q ss_pred CcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeC
Q 043350 106 QQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNL 182 (1133)
Q Consensus 106 ~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl 182 (1133)
+..+.|.|||..|+.+.++. +.++|... |.. +.+|++|.. .|.+++ +.||+++| +.|+.|.+|+-
T Consensus 15 i~d~afkPDGsqL~lAAg~r-lliyD~nd---G~l-lqtLKgHKD-------tVycVAys~dGkrFASG~aDK~VI~W~~ 82 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAAGSR-LLVYDTSD---GTL-LQPLKGHKD-------TVYCVAYAKDGKRFASGSADKSVIIWTS 82 (1081)
T ss_pred hheeEECCCCceEEEecCCE-EEEEeCCC---ccc-ccccccccc-------eEEEEEEccCCceeccCCCceeEEEecc
Confidence 44578999999888776544 57888763 777 899999999 999999 99999999 88999999986
Q ss_pred CCCCCcCcCCCcccc-----C-CC--------------CCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q 043350 183 EDSYEPGAGIGGRVR-----R-GD--------------EDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMD 242 (1133)
Q Consensus 183 ~~~~~~~~gh~~~v~-----~-g~--------------~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~ 242 (1133)
.-.-.....|+..+. + .+ .+.....-......|.|++|..||++++.|..||+|.|-+-.
T Consensus 83 klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~ 162 (1081)
T KOG1538|consen 83 KLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN 162 (1081)
T ss_pred cccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC
Confidence 531111123332211 0 00 000000000123468899999999999999999999999876
Q ss_pred CCCCCCCCCcccccccccCCCCeEEEEEeeC---Cc---EEEEeCCCcEEEEeCCCC----ceeeEeCCCCceEEEEeec
Q 043350 243 QTLDDANNPFKEGLSWQAHRGPVLAMIFSSQ---GD---LWSGGEGGVIKIWPWESI----EKSLSLKPEEKHMAALLVE 312 (1133)
Q Consensus 243 ~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~---g~---L~Sgs~DgtI~iWdl~~~----~~~l~~~~~~~~l~s~~~d 312 (1133)
++++ ..+....|...+|++++|+|. |. ++...+..++.++.+... .+.+.+.|.-.
T Consensus 163 gEek------~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~Ci-------- 228 (1081)
T KOG1538|consen 163 GEEK------VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCI-------- 228 (1081)
T ss_pred CCcc------eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhh--------
Confidence 6332 233344567899999999997 22 777777888888777651 22233322211
Q ss_pred ceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCcccccc
Q 043350 313 RSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDE 392 (1133)
Q Consensus 313 ~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e 392 (1133)
...++++..++..+++..+++. +.|-.+.++.....+|+.++..|+++.
T Consensus 229 ---------------sYf~NGEy~LiGGsdk~L~~fT-----------R~GvrLGTvg~~D~WIWtV~~~PNsQ~----- 277 (1081)
T KOG1538|consen 229 ---------------SYFTNGEYILLGGSDKQLSLFT-----------RDGVRLGTVGEQDSWIWTVQAKPNSQY----- 277 (1081)
T ss_pred ---------------eeccCCcEEEEccCCCceEEEe-----------ecCeEEeeccccceeEEEEEEccCCce-----
Confidence 1225666666666666666666 888888888878889999999999999
Q ss_pred ceEEEEeeCCCCccc
Q 043350 393 MKVKFVSSNKKEKPH 407 (1133)
Q Consensus 393 ~~v~lasgs~Dg~i~ 407 (1133)
++.|+.||++-
T Consensus 278 ----v~~GCqDGTiA 288 (1081)
T KOG1538|consen 278 ----VVVGCQDGTIA 288 (1081)
T ss_pred ----EEEEEccCeee
Confidence 99999999986
No 165
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.57 E-value=2.2e-13 Score=149.88 Aligned_cols=297 Identities=13% Similarity=0.137 Sum_probs=198.1
Q ss_pred eeeeccCCCccccccceEEEEE-eC--CCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeE
Q 043350 142 CLELRPHPLKETQAGRFLRNIA-CT--DTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTM 216 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V~~v~-s~--dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~ 216 (1133)
....+.|.. .|++++ .| +..++| ...|+|-+||+.+..... ..-+....|..+|.
T Consensus 179 ~~v~kv~~~-------Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~-------------d~v~~f~~hs~~Vs 238 (498)
T KOG4328|consen 179 LNVAKVTDR-------RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK-------------DGVYLFTPHSGPVS 238 (498)
T ss_pred cceeEeccc-------ceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc-------------CceEEeccCCcccc
Confidence 445566666 788888 44 556777 557899999996422111 11345667899999
Q ss_pred EEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCc
Q 043350 217 CLMVDC-GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIE 294 (1133)
Q Consensus 217 ~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~ 294 (1133)
||.|+| +...+++.|.||+|++-|++... +.++..+..-.....++.|+.+.. ++.+..=|...+||+++.-
T Consensus 239 ~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i------~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~ 312 (498)
T KOG4328|consen 239 GLKFSPANTSQIYSSSYDGTIRLQDFEGNI------SEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDG 312 (498)
T ss_pred ceEecCCChhheeeeccCceeeeeeecchh------hHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCC
Confidence 999999 66789999999999999998622 255666655566778888988777 8888877899999998732
Q ss_pred e---eeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCc----eeE
Q 043350 295 K---SLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKE----LLK 367 (1133)
Q Consensus 295 ~---~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~----~l~ 367 (1133)
. .+.++..... .+++. | -.-.+++++ +.|++.+|||+|.-. ++-
T Consensus 313 s~~~~~~lh~kKI~---------sv~~N-----------P-~~p~~laT~--------s~D~T~kIWD~R~l~~K~sp~l 363 (498)
T KOG4328|consen 313 SEYENLRLHKKKIT---------SVALN-----------P-VCPWFLATA--------SLDQTAKIWDLRQLRGKASPFL 363 (498)
T ss_pred ccchhhhhhhcccc---------eeecC-----------C-CCchheeec--------ccCcceeeeehhhhcCCCCcce
Confidence 2 2222222211 22222 2 122345566 789999999998322 233
Q ss_pred EEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEE
Q 043350 368 VFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVL 447 (1133)
Q Consensus 368 ~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~ 447 (1133)
....|...|.+..|||.+.. |++.+.|..|+.|+...+.........|..-... ..+..++ ...|
T Consensus 364 st~~HrrsV~sAyFSPs~gt---------l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t-----~RwlT~f-KA~W 428 (498)
T KOG4328|consen 364 STLPHRRSVNSAYFSPSGGT---------LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRT-----GRWLTPF-KAAW 428 (498)
T ss_pred ecccccceeeeeEEcCCCCc---------eEeeccCCceEEeecccccccCCccceeeccCcc-----cccccch-hhee
Confidence 44568889999999999988 9999999999877765332222211112111111 1111222 2348
Q ss_pred CCCC-eEEEEecCCeEEEEeCCCC-eeEEEecC-CcceeE---EecCCCEEEEE-ecCCeEEEEeCCC
Q 043350 448 TADG-MIWSGCTNGLLVQWDGNGN-RVSDILHH-QCAVQC---FCTYGSRMYVG-YVSGYLQILDLDG 508 (1133)
Q Consensus 448 spdg-~L~sgs~DG~I~vWd~~g~-~l~~~~~h-~~~V~~---fs~dg~~Lasg-s~DG~I~vwd~~g 508 (1133)
.|+. ++++|-.-..|-++|.+++ .+..+... ...|.| |+|-+..+++| +..|.|+||.-++
T Consensus 429 ~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 429 DPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred CCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence 8888 9999988889999999764 46665543 335555 99998855554 5789999997553
No 166
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=1.2e-12 Score=154.98 Aligned_cols=315 Identities=16% Similarity=0.199 Sum_probs=193.3
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEE
Q 043350 210 ANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIW 288 (1133)
Q Consensus 210 ~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iW 288 (1133)
.|.-+++|.+++|+++++|+|..||.|.+|.--+... . -.....+.-|.+.|++++|+++|. |+|||..|.+.+|
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~--~--~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~W 278 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD--D--SETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLW 278 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEecccccc--c--cccceEEEecccccceeEEecCCceEeecccceEEEEE
Confidence 4666799999999999999999999999998543111 0 133456777999999999999999 9999999999999
Q ss_pred eCCCC-----------ceeeEeCCCCceEEEEeecceEEEcc-----CceeeeccccC-C-----CCCeEEEEecC--Cc
Q 043350 289 PWESI-----------EKSLSLKPEEKHMAALLVERSFIDLR-----AQVTVNGACSI-S-----STEIKCMLSDH--AR 344 (1133)
Q Consensus 289 dl~~~-----------~~~l~~~~~~~~l~s~~~d~s~~d~~-----~~~~v~~~~~~-~-----~~~~~~l~S~d--~~ 344 (1133)
.+++. +..+.+.+++...+....|..+.-+. ....+.++... + .......++.| .+
T Consensus 279 q~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 279 QLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred eecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 99873 34456678877777777777633222 12245555432 1 11222233333 34
Q ss_pred eEEEecCCCceeEeecCCCceeEEEec-----CC------cceeEEEeCCCCCccccccceEEEEeeCC--------CCc
Q 043350 345 ARVWCAQPLSFSLWDARSKELLKVFNI-----EG------HIENRVDTQSVQDQPVEDEMKVKFVSSNK--------KEK 405 (1133)
Q Consensus 345 i~vwss~d~~I~lWD~~tg~~l~~~~~-----h~------~~v~~l~~sp~g~~~~e~e~~v~lasgs~--------Dg~ 405 (1133)
..+.++..+.|.+||+.+...+..+.. +. -.+++++.+..+.+ +++.-. ||.
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~---------maT~E~~~d~~~~~~~e 429 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSW---------MATLEARIDKFNFFDGE 429 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceE---------EEEeeeeehhhhccCce
Confidence 567788999999999998877755532 11 12456666666766 444321 222
Q ss_pred cc--cccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCC--C-eEEEEecCCeEEEEeCCC-----------
Q 043350 406 PH--GFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTAD--G-MIWSGCTNGLLVQWDGNG----------- 469 (1133)
Q Consensus 406 i~--~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spd--g-~L~sgs~DG~I~vWd~~g----------- 469 (1133)
+. -|.-. ...+ -+.+... ....|...+.+.++.+. . +.++++.||.+++|-.++
T Consensus 430 ~~LKFW~~n-----~~~k--t~~L~T~---I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W 499 (792)
T KOG1963|consen 430 VSLKFWQYN-----PNSK--TFILNTK---INNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNW 499 (792)
T ss_pred EEEEEEEEc-----CCcc--eeEEEEE---EecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccce
Confidence 21 11100 0000 1111111 01344444444444332 2 889999999999997732
Q ss_pred CeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCC-Ccc-eeeeccccCeEEeeec----ccceeeecccCCee
Q 043350 470 NRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG-NLT-ASWIAHSSPVLKLAVG----VDHIYSLAAHGGIR 541 (1133)
Q Consensus 470 ~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g-~~l-~~~~~H~~~V~~l~fs----~~~L~S~s~Dg~I~ 541 (1133)
.|...-..|..++++ |+.||..|++| .|++|.+||... +.+ .....-..++..+.+. ....+.......+.
T Consensus 500 ~c~~i~sy~k~~i~a~~fs~dGslla~s-~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 578 (792)
T KOG1963|consen 500 TCKAIGSYHKTPITALCFSQDGSLLAVS-FDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLS 578 (792)
T ss_pred EEeeeeccccCcccchhhcCCCcEEEEe-cCCEEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEe
Confidence 122111125666665 99999766655 588999999875 322 2222223344444444 34445556677788
Q ss_pred eccccCC
Q 043350 542 GWTFTSP 548 (1133)
Q Consensus 542 lW~l~s~ 548 (1133)
+|++.+.
T Consensus 579 ~WNll~~ 585 (792)
T KOG1963|consen 579 VWNLLSM 585 (792)
T ss_pred hHhhhhh
Confidence 9987653
No 167
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.56 E-value=8e-14 Score=157.95 Aligned_cols=267 Identities=12% Similarity=0.106 Sum_probs=194.5
Q ss_pred eEEEEE-eCCCCeEE-ecCCcEEEeeCCC--CCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCC
Q 043350 158 FLRNIA-CTDTQLWA-GQECGVRFWNLED--SYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKD 233 (1133)
Q Consensus 158 ~V~~v~-s~dg~lla-s~Dg~VrvWdl~~--~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~D 233 (1133)
.|..++ .|||.-|+ ..+..+.+||..+ ...+++ +|...|+|++|+.||+++|+|+.|
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLK-------------------gHKDtVycVAys~dGkrFASG~aD 74 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLK-------------------GHKDTVYCVAYAKDGKRFASGSAD 74 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccc-------------------cccceEEEEEEccCCceeccCCCc
Confidence 578888 88887766 9999999999987 444444 555689999999999999999999
Q ss_pred CeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeec
Q 043350 234 GKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVE 312 (1133)
Q Consensus 234 g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d 312 (1133)
+.|.+|+..- +-+ .-..|.+.|.||.|+|-.+ |+||+... .-+|..+.
T Consensus 75 K~VI~W~~kl---------EG~-LkYSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~q-------------------- 123 (1081)
T KOG1538|consen 75 KSVIIWTSKL---------EGI-LKYSHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQ-------------------- 123 (1081)
T ss_pred eeEEEecccc---------cce-eeeccCCeeeEeecCchHHHhhhcchhh-ccccChhh--------------------
Confidence 9999999764 111 2256999999999999988 99998542 23443321
Q ss_pred ceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCcccccc
Q 043350 313 RSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDE 392 (1133)
Q Consensus 313 ~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e 392 (1133)
.. +... .....+.+.+|..||++
T Consensus 124 --------------------------------------------------K~-V~K~-kss~R~~~CsWtnDGqy----- 146 (1081)
T KOG1538|consen 124 --------------------------------------------------KS-VSKH-KSSSRIICCSWTNDGQY----- 146 (1081)
T ss_pred --------------------------------------------------hh-HHhh-hhheeEEEeeecCCCcE-----
Confidence 00 0000 01234667889999999
Q ss_pred ceEEEEeeCCCCccc--ccccccccee---eccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeC
Q 043350 393 MKVKFVSSNKKEKPH--GFLQRSRNAI---MGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDG 467 (1133)
Q Consensus 393 ~~v~lasgs~Dg~i~--~~~~~~~~~~---~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~ 467 (1133)
++.|-.+|+|. +..+...-.+ -|...+|++++++|+... ..+..+++.....++.++.+
T Consensus 147 ----lalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~------------G~~di~aV~DW~qTLSFy~L 210 (1081)
T KOG1538|consen 147 ----LALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGE------------GRNDILAVADWGQTLSFYQL 210 (1081)
T ss_pred ----EEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCC------------CccceEEEEeccceeEEEEe
Confidence 99999999985 2222111111 123344555555433210 00126888889999999999
Q ss_pred CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCCCcceeeeccccCeEEeeec--ccceeeecccCCeeec
Q 043350 468 NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGNLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGW 543 (1133)
Q Consensus 468 ~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW 543 (1133)
+|+.+..-..-.-.-.| +.++|+|+..|+.|+.+++|..+|-.+.+.-.....|+.|+.. +++++-|..||+|--+
T Consensus 211 sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 211 SGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACY 290 (1081)
T ss_pred cceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehh
Confidence 99777644332333344 8899999999999999999999998888888888999999998 8899999999999999
Q ss_pred cccC
Q 043350 544 TFTS 547 (1133)
Q Consensus 544 ~l~s 547 (1133)
++..
T Consensus 291 Nl~f 294 (1081)
T KOG1538|consen 291 NLIF 294 (1081)
T ss_pred hhHH
Confidence 9864
No 168
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=3.7e-14 Score=159.75 Aligned_cols=272 Identities=19% Similarity=0.302 Sum_probs=172.4
Q ss_pred eeeeccCCCccccccceEEEEE-eC-CCCeEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEE
Q 043350 142 CLELRPHPLKETQAGRFLRNIA-CT-DTQLWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCL 218 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V~~v~-s~-dg~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~l 218 (1133)
..+++.|.. .+++++ .+ .+.++. +.|+++++|+++...... +...-.-+.+.+|.+||.|+
T Consensus 287 k~tl~s~~d-------~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~---------~~~~epi~tfraH~gPVl~v 350 (577)
T KOG0642|consen 287 KFTLRSHDD-------CIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSA---------EKDVEPILTFRAHEGPVLCV 350 (577)
T ss_pred eeeeecchh-------hhhhhhcCCCCCeEEEeccccchhhhhhcccCCcc---------ccceeeeEEEecccCceEEE
Confidence 346677776 677777 33 445555 999999999995521110 11122246778999999999
Q ss_pred EEeCCCCEEEEEeCCCeEEEEeCCCCCC--CCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCce
Q 043350 219 MVDCGNRLVWTGHKDGKIRSWKMDQTLD--DANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEK 295 (1133)
Q Consensus 219 a~spd~~~LaSgs~Dg~V~vWd~~~~~~--~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~ 295 (1133)
++.+++..+++|+-||+|+.|++..... +...+.....++.||++.|+.+++++..+ |++||.||++++|+......
T Consensus 351 ~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 351 VVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred EecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc
Confidence 9999999999999999999998763211 11122244558899999999999999888 99999999999999876433
Q ss_pred eeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecC---
Q 043350 296 SLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIE--- 372 (1133)
Q Consensus 296 ~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h--- 372 (1133)
+.+........-. .+|+.. .+...+.+. ..-+.-.+.|...+..++.+...
T Consensus 431 -~~f~~~~e~g~Pl-----svd~~s------------s~~a~~~~s--------~~~~~~~~~~~ev~s~~~~~~s~~~~ 484 (577)
T KOG0642|consen 431 -CTFGEPKEHGYPL-----SVDRTS------------SRPAHSLAS--------FRFGYTSIDDMEVVSDLLIFESSASP 484 (577)
T ss_pred -cccCCccccCCcc-----eEeecc------------chhHhhhhh--------cccccccchhhhhhhheeeccccCCC
Confidence 2222211111111 222210 000000000 11111223333444444443221
Q ss_pred ----CcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEEC
Q 043350 373 ----GHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLT 448 (1133)
Q Consensus 373 ----~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~s 448 (1133)
...++.+...|...+ .+++..|++|+.++......+ ++ ...|...++++++.
T Consensus 485 ~~~~~~~in~vVs~~~~~~---------~~~~hed~~Ir~~dn~~~~~l-----------~s----~~a~~~svtslai~ 540 (577)
T KOG0642|consen 485 GPRRYPQINKVVSHPTADI---------TFTAHEDRSIRFFDNKTGKIL-----------HS----MVAHKDSVTSLAID 540 (577)
T ss_pred cccccCccceEEecCCCCe---------eEecccCCceecccccccccc-----------hh----eeeccceecceeec
Confidence 123567778888888 889999999974443311111 01 23456667788888
Q ss_pred CCC-eEEEEecCCeEEEEeC-CCCeeEEEecCC
Q 043350 449 ADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQ 479 (1133)
Q Consensus 449 pdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~ 479 (1133)
|+| +|++|+.||.+++|.+ ...++.....|.
T Consensus 541 ~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 541 PNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred CCCceEEeecCCceeehhhccchheeecccccc
Confidence 999 9999999999999999 446666666554
No 169
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.56 E-value=1.6e-13 Score=149.20 Aligned_cols=169 Identities=21% Similarity=0.335 Sum_probs=121.3
Q ss_pred CCCeEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCCCC-CCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEE
Q 043350 212 TSPTMCLMVDCGNR-LVWTGHKDGKIRSWKMDQTLDDA-NNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIW 288 (1133)
Q Consensus 212 ~s~V~~la~spd~~-~LaSgs~Dg~V~vWd~~~~~~~~-~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iW 288 (1133)
..||..+.|.++.. .||||+.|..|++|.+....... .........+..|...|++|.|+|+|+ |+||+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 34899999998665 99999999999999987533211 123455668899999999999999999 9999999999999
Q ss_pred eCCCCceeeEeC-----CCCceEEEEeecceEEEccCc-eeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCC
Q 043350 289 PWESIEKSLSLK-----PEEKHMAALLVERSFIDLRAQ-VTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARS 362 (1133)
Q Consensus 289 dl~~~~~~l~~~-----~~~~~l~s~~~d~s~~d~~~~-~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~t 362 (1133)
..... ....-. ..+.+++-- .++.+ ..+..++ ..++..+++++ +.|.++++||+..
T Consensus 93 k~~~~-~~~~~d~e~~~~ke~w~v~k-------~lr~h~~diydL~--Ws~d~~~l~s~--------s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 93 KQGDV-RIFDADTEADLNKEKWVVKK-------VLRGHRDDIYDLA--WSPDSNFLVSG--------SVDNSVRLWDVHA 154 (434)
T ss_pred EecCc-CCccccchhhhCccceEEEE-------Eecccccchhhhh--ccCCCceeeee--------eccceEEEEEecc
Confidence 87641 000000 011121111 01111 1233333 34556666666 8899999999999
Q ss_pred CceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccc
Q 043350 363 KELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPH 407 (1133)
Q Consensus 363 g~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~ 407 (1133)
|.++..+..|...+..++|.|-+++ +++-+.|...+
T Consensus 155 G~l~~~~~dh~~yvqgvawDpl~qy---------v~s~s~dr~~~ 190 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDPLNQY---------VASKSSDRHPE 190 (434)
T ss_pred ceeEeeccccccccceeecchhhhh---------hhhhccCcccc
Confidence 9999999999999999999999988 77766666444
No 170
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.55 E-value=1.9e-11 Score=142.40 Aligned_cols=353 Identities=19% Similarity=0.293 Sum_probs=231.1
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE--eCCCC-eEE--ec-CCcEEEeeC
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA--CTDTQ-LWA--GQ-ECGVRFWNL 182 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~--s~dg~-lla--s~-Dg~VrvWdl 182 (1133)
..|.+.+..++.++.|+.+.+|+... +......+..+.. ..+..+. .+++. +++ +. |+.+++|+.
T Consensus 71 ~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 141 (466)
T COG2319 71 IAFSPDGELLLSGSSDGTIKLWDLDN---GEKLIKSLEGLHD------SSVSKLALSSPDGNSILLASSSLDGTVKLWDL 141 (466)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcCC---CceeEEEEeccCC------CceeeEEEECCCcceEEeccCCCCccEEEEEe
Confidence 77899999999999999999999873 2212555555332 1333333 34555 444 44 899999998
Q ss_pred CCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCCCCCCCCcccccccccC
Q 043350 183 EDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHK-DGKIRSWKMDQTLDDANNPFKEGLSWQAH 261 (1133)
Q Consensus 183 ~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~-Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH 261 (1133)
...... ......|...|.+++|+|++..+++++. |+.+++|++.. ...+..+.+|
T Consensus 142 ~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 197 (466)
T COG2319 142 STPGKL----------------IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT--------GKPLSTLAGH 197 (466)
T ss_pred cCCCeE----------------EEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC--------CceEEeeccC
Confidence 861110 2245567888999999999999999886 99999999985 1455677779
Q ss_pred CCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceee-EeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEE
Q 043350 262 RGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSL-SLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCM 338 (1133)
Q Consensus 262 ~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l-~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l 338 (1133)
...|.+++|+|++. +++++.|++|++||........ .+...... . +. ...+.. ..+
T Consensus 198 ~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~----------------~-~~--~~~~~~--~~~ 256 (466)
T COG2319 198 TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS----------------V-VS--SFSPDG--SLL 256 (466)
T ss_pred CCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc----------------e-eE--eECCCC--CEE
Confidence 99999999999997 5555999999999876321111 11111110 0 00 111122 233
Q ss_pred EecCCceEEEecCCCceeEeecCCCce-eEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccccccccee
Q 043350 339 LSDHARARVWCAQPLSFSLWDARSKEL-LKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAI 417 (1133)
Q Consensus 339 ~S~d~~i~vwss~d~~I~lWD~~tg~~-l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~ 417 (1133)
+++ +.++.+++||+..... +..+..|...+.++.+.|++.. +++++.|+.+..|+.......
T Consensus 257 ~~~--------~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---------~~~~~~d~~~~~~~~~~~~~~ 319 (466)
T COG2319 257 ASG--------SSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKL---------LASGSSDGTVRLWDLETGKLL 319 (466)
T ss_pred EEe--------cCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCE---------EEEeeCCCcEEEEEcCCCceE
Confidence 344 7899999999986654 5555677888999999997777 777888876654432211111
Q ss_pred eccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEE-ecCCeEEEEeCCCCe-eEEEecCCcceeE--EecCCCEE
Q 043350 418 MGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSG-CTNGLLVQWDGNGNR-VSDILHHQCAVQC--FCTYGSRM 492 (1133)
Q Consensus 418 ~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sg-s~DG~I~vWd~~g~~-l~~~~~h~~~V~~--fs~dg~~L 492 (1133)
. ... ...|...+..+.+.+++ .++.+ ..|+.+.+|+..... ......... +.. +.+ ...+
T Consensus 320 ~-------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~ 384 (466)
T COG2319 320 S-------SLT------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSP-DGRV 384 (466)
T ss_pred E-------Eee------ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEECC-CCCE
Confidence 0 000 12444467777774443 45555 688999999995533 222222222 444 555 4434
Q ss_pred EE-EecCCeEEEEeCCCCcc-eeeeccccCeEEeeec--ccceeeecccCCeeeccccC
Q 043350 493 YV-GYVSGYLQILDLDGNLT-ASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 493 as-gs~DG~I~vwd~~g~~l-~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s 547 (1133)
.. +..++.+.+|+...... .....+...+....+. +..+++++.++.+++|++..
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 385 VSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 43 68999999999985433 2333332777777777 77888889999999999766
No 171
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=1.7e-12 Score=132.22 Aligned_cols=246 Identities=17% Similarity=0.203 Sum_probs=162.1
Q ss_pred cCCCCCEEEEecCCCeEEeccCCCC------CCCCCCeeeeccCCCccccccceEEEEEeCCCCeEEecCCcEEEeeCCC
Q 043350 111 FQPMVEFIGSGGGTGIFKVPSRAAV------HPGRPPCLELRPHPLKETQAGRFLRNIACTDTQLWAGQECGVRFWNLED 184 (1133)
Q Consensus 111 ~~p~g~~lasgs~dg~irlW~~~~~------~~g~~~~~~l~~H~~~~~~~g~~V~~v~s~dg~llas~Dg~VrvWdl~~ 184 (1133)
.+|.+++|+.|+.+|.|-+..+... .+++.++...++|.+ +++.++..|..+|.+.||.|+-|.+..
T Consensus 18 ~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdg-------piy~~~f~d~~Lls~gdG~V~gw~W~E 90 (325)
T KOG0649|consen 18 ISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDG-------PIYYLAFHDDFLLSGGDGLVYGWEWNE 90 (325)
T ss_pred hCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCC-------CeeeeeeehhheeeccCceEEEeeehh
Confidence 4899999999999999999875432 557777788899999 999999778888888899999999887
Q ss_pred CCCcCcCCCccccCCCCCCCceee-ccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCC
Q 043350 185 SYEPGAGIGGRVRRGDEDAAPFYE-SANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRG 263 (1133)
Q Consensus 185 ~~~~~~gh~~~v~~g~~~~~~~~~-~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~ 263 (1133)
..+...... --+...|+.. ......|+++..+|..+-|++++.|+.+..||++.+ +....++||++
T Consensus 91 ~~es~~~K~-----lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G--------~i~r~~rGHtD 157 (325)
T KOG0649|consen 91 EEESLATKR-----LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDG--------RIQREYRGHTD 157 (325)
T ss_pred hhhhccchh-----hhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCC--------EEEEEEcCCcc
Confidence 333210000 0011112111 223446899999997777777779999999999862 44568999999
Q ss_pred CeEEEEE-eeCCcEEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecC
Q 043350 264 PVLAMIF-SSQGDLWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDH 342 (1133)
Q Consensus 264 ~V~sl~f-sp~g~L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d 342 (1133)
.|.+++- +..++++||++||++|+||..+....-.+.+-... -+..|+....+.+-.-
T Consensus 158 YvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~---------------------~~lRp~~g~wigala~ 216 (325)
T KOG0649|consen 158 YVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP---------------------NLLRPDWGKWIGALAV 216 (325)
T ss_pred eeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccCh---------------------hhcCcccCceeEEEec
Confidence 9999998 44555999999999999999874221111110000 0000111111111111
Q ss_pred CceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccc
Q 043350 343 ARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGF 409 (1133)
Q Consensus 343 ~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~ 409 (1133)
+.--+.+++...+.+|.++..++..+|... ..+..+.|-.+ . +++++..+.++.|
T Consensus 217 ~edWlvCGgGp~lslwhLrsse~t~vfpip-a~v~~v~F~~d--~---------vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 217 NEDWLVCGGGPKLSLWHLRSSESTCVFPIP-ARVHLVDFVDD--C---------VLIGGEGNHVQSY 271 (325)
T ss_pred cCceEEecCCCceeEEeccCCCceEEEecc-cceeEeeeecc--e---------EEEeccccceeee
Confidence 111222356678899999999988888653 24555566543 3 6677777777543
No 172
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.52 E-value=1.3e-13 Score=141.96 Aligned_cols=264 Identities=14% Similarity=0.144 Sum_probs=175.5
Q ss_pred ceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccc-cCCCCeEEEEEeeCCcEEEEeCCC
Q 043350 205 PFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQ-AHRGPVLAMIFSSQGDLWSGGEGG 283 (1133)
Q Consensus 205 ~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~-gH~~~V~sl~fsp~g~L~Sgs~Dg 283 (1133)
-|++..|.+.|+|+.|..+++ |.+|..-|.|++|++.+. +....+. .|+..|+.+.-.|++.|.|-+.|+
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~--------r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~ 77 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTE--------RDLPLIRLFGRLFITNLQSIPNDSLDTQGRDP 77 (323)
T ss_pred eeEeccccchheehhhccchh-hhcccccceEEEEEeecC--------ccchhhhhhccceeeceeecCCcchhhcCCCc
Confidence 467778999999999987665 899999999999999872 3344566 568899999999986699999999
Q ss_pred cEEEEeCCCC----ce-----ee-----EeCCCCce---EEEEeecce----EEEccCc--e------------eeecc-
Q 043350 284 VIKIWPWESI----EK-----SL-----SLKPEEKH---MAALLVERS----FIDLRAQ--V------------TVNGA- 327 (1133)
Q Consensus 284 tI~iWdl~~~----~~-----~l-----~~~~~~~~---l~s~~~d~s----~~d~~~~--~------------~v~~~- 327 (1133)
.+.+|++... +. .+ ++.+..+. +.....+++ .-|.... . .+...
T Consensus 78 ~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~ 157 (323)
T KOG0322|consen 78 LLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQD 157 (323)
T ss_pred eEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeee
Confidence 9999999761 11 11 11111111 111100000 0000000 0 00001
Q ss_pred ccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeE----------EEecCCcceeEEEeCCCCCccccccceEEE
Q 043350 328 CSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLK----------VFNIEGHIENRVDTQSVQDQPVEDEMKVKF 397 (1133)
Q Consensus 328 ~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~----------~~~~h~~~v~~l~~sp~g~~~~e~e~~v~l 397 (1133)
..+......+++.+ -.+|.|.+||+.++..+- ....|.++|.++.+.+.... =
T Consensus 158 ~~~~c~s~~lllaG--------yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r---------G 220 (323)
T KOG0322|consen 158 KDHACGSTFLLLAG--------YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR---------G 220 (323)
T ss_pred ccccccceEEEEEe--------ccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC---------C
Confidence 12223445556666 789999999999884332 33457788888888765443 3
Q ss_pred EeeCCCCcccccccc-ccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEE
Q 043350 398 VSSNKKEKPHGFLQR-SRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSD 474 (1133)
Q Consensus 398 asgs~Dg~i~~~~~~-~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~ 474 (1133)
++|+.+.++..|... ....+ .+. +...-.+..|..+.+.||+ .++|++.||.|++|+. +.+.+..
T Consensus 221 isgga~dkl~~~Sl~~s~gsl-----q~~-------~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAV 288 (323)
T KOG0322|consen 221 ISGGADDKLVMYSLNHSTGSL-----QIR-------KEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAV 288 (323)
T ss_pred cCCCccccceeeeeccccCcc-----ccc-------ceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhh
Confidence 455655555321110 00000 000 0012233457778889999 9999999999999999 6699999
Q ss_pred EecCCcceeE--EecCCCEEEEEecCCeEEEEeC
Q 043350 475 ILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDL 506 (1133)
Q Consensus 475 ~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~ 506 (1133)
++.|...|++ |+|+...+|+|+.|++|.+|++
T Consensus 289 LkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 289 LKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999 9999999999999999999986
No 173
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=3.4e-13 Score=143.74 Aligned_cols=268 Identities=14% Similarity=0.169 Sum_probs=176.6
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeC--Cc-EEEEeCCCcEEEEeCCCCce--eeEe
Q 043350 225 RLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQ--GD-LWSGGEGGVIKIWPWESIEK--SLSL 299 (1133)
Q Consensus 225 ~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~--g~-L~Sgs~DgtI~iWdl~~~~~--~l~~ 299 (1133)
..+|++-..|.|++||..++ +.+..+++|...++.+.|... .. +.||+.||+||+||++.... .+.+
T Consensus 41 ~~vav~lSngsv~lyd~~tg--------~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~ 112 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG--------QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISW 112 (376)
T ss_pred eeEEEEecCCeEEEEeccch--------hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheec
Confidence 56888899999999998861 556788999999999999885 34 99999999999999987322 2222
Q ss_pred CCCC-ceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCce-eEE-EecCCcce
Q 043350 300 KPEE-KHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKEL-LKV-FNIEGHIE 376 (1133)
Q Consensus 300 ~~~~-~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~-l~~-~~~h~~~v 376 (1133)
.... ..+ ..++.. -...+++++-. -...+..|.+||+|..+. +.. +..|.+.|
T Consensus 113 ~~~~~~~f-------~~ld~n-------------ck~~ii~~GtE----~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDV 168 (376)
T KOG1188|consen 113 TQQSGTPF-------ICLDLN-------------CKKNIIACGTE----LTRSDASVVLWDVRSEQQLLRQLNESHNDDV 168 (376)
T ss_pred cCCCCCcc-------eEeecc-------------CcCCeEEeccc----cccCceEEEEEEeccccchhhhhhhhccCcc
Confidence 2221 110 022221 11112222200 013577899999997665 554 46789999
Q ss_pred eEEEeCCC-CCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC--eE
Q 043350 377 NRVDTQSV-QDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG--MI 453 (1133)
Q Consensus 377 ~~l~~sp~-g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg--~L 453 (1133)
+++.|+|. ..+ +++||.||.+..|+.+.-.. .++... ...+...|..+.|..++ .|
T Consensus 169 T~lrFHP~~pnl---------LlSGSvDGLvnlfD~~~d~E----eDaL~~--------viN~~sSI~~igw~~~~ykrI 227 (376)
T KOG1188|consen 169 TQLRFHPSDPNL---------LLSGSVDGLVNLFDTKKDNE----EDALLH--------VINHGSSIHLIGWLSKKYKRI 227 (376)
T ss_pred eeEEecCCCCCe---------EEeecccceEEeeecCCCcc----hhhHHH--------hhcccceeeeeeeecCCcceE
Confidence 99999995 556 99999999986444331111 001000 12344557777777777 88
Q ss_pred EEEecCCeEEEEeC-CCCeeEEEec-------------CCcceeEEec-CCCEEEEEec-CCeEEEEeCC----C---Cc
Q 043350 454 WSGCTNGLLVQWDG-NGNRVSDILH-------------HQCAVQCFCT-YGSRMYVGYV-SGYLQILDLD----G---NL 510 (1133)
Q Consensus 454 ~sgs~DG~I~vWd~-~g~~l~~~~~-------------h~~~V~~fs~-dg~~Lasgs~-DG~I~vwd~~----g---~~ 510 (1133)
++-+..++..+|++ .+.+...+.. ...-|.+.+| ++...+.++. -|+..++-+. + +.
T Consensus 228 ~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~ 307 (376)
T KOG1188|consen 228 MCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTE 307 (376)
T ss_pred EEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCc
Confidence 88899999999999 5543333221 2234445545 4445555554 5555555432 2 34
Q ss_pred ceeeec-cccCeEEeeec--ccceeeecccCCeeeccc
Q 043350 511 TASWIA-HSSPVLKLAVG--VDHIYSLAAHGGIRGWTF 545 (1133)
Q Consensus 511 l~~~~~-H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l 545 (1133)
+..+++ |...|.++.|. +..++|||.||.+.+|..
T Consensus 308 ~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 308 PAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 566777 77889999998 999999999999999985
No 174
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.51 E-value=1.2e-12 Score=158.42 Aligned_cols=369 Identities=14% Similarity=0.142 Sum_probs=205.8
Q ss_pred cccccCCCCcccccCCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCC-CCCeeeeccCCCccccccceEEEE
Q 043350 84 TTSGVPVNEDYVCPGPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPG-RPPCLELRPHPLKETQAGRFLRNI 162 (1133)
Q Consensus 84 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g-~~~~~~l~~H~~~~~~~g~~V~~v 162 (1133)
+...|.|.|.++..-|+.......-...++.+.+++|||.||+||+|+...+..+ ..-.-++.-|.. +..+..+
T Consensus 1030 p~~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~-----~sr~~~v 1104 (1431)
T KOG1240|consen 1030 PPPGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPE-----GSRVEKV 1104 (1431)
T ss_pred CCCCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEecc-----CCceEEE
Confidence 3337899999998866655544444455788899999999999999996533111 111223333322 3378888
Q ss_pred E-eCCCCeEE--ecCCcEEEeeCCCC-CCcCcCCCccccCCCCCCCceeeccC-CC-CeEEEEEeC-CC-CEEEEEeCCC
Q 043350 163 A-CTDTQLWA--GQECGVRFWNLEDS-YEPGAGIGGRVRRGDEDAAPFYESAN-TS-PTMCLMVDC-GN-RLVWTGHKDG 234 (1133)
Q Consensus 163 ~-s~dg~lla--s~Dg~VrvWdl~~~-~~~~~gh~~~v~~g~~~~~~~~~~~h-~s-~V~~la~sp-d~-~~LaSgs~Dg 234 (1133)
. +.+++.+| +.||.|++.+++.. .....+... .+...+ .+ -|.+.+|.. .+ ..|+.+..-+
T Consensus 1105 t~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~-----------ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~ 1173 (1431)
T KOG1240|consen 1105 TMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQV-----------RIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLS 1173 (1431)
T ss_pred EeccCCCeEEEEcCCCeEEEEEccccccccceeeee-----------ecccccCCCceEEeecccccccceeEEEEEecc
Confidence 8 99998888 88999999998762 111111110 011111 12 233344443 33 3788888889
Q ss_pred eEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecc
Q 043350 235 KIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVER 313 (1133)
Q Consensus 235 ~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~ 313 (1133)
.|..||+..... -......-..+.|++++.+|.++ +++|...|.+.+||++-.+...+++....
T Consensus 1174 ~iv~~D~r~~~~------~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~--------- 1238 (1431)
T KOG1240|consen 1174 RIVSWDTRMRHD------AWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR--------- 1238 (1431)
T ss_pred ceEEecchhhhh------HHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc---------
Confidence 999999986111 11112223368999999999999 99999999999999987655555422111
Q ss_pred eEEEccCceeeecc--ccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccc
Q 043350 314 SFIDLRAQVTVNGA--CSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVED 391 (1133)
Q Consensus 314 s~~d~~~~~~v~~~--~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~ 391 (1133)
..+..+ |.....+...+.++ ....+.|.+|++.+|.+-.++-...... .+. .
T Consensus 1239 --------~~i~~v~~~~~~~~~S~~vs~~-------~~~~nevs~wn~~~g~~~~vl~~s~~~p-~ls------~---- 1292 (1431)
T KOG1240|consen 1239 --------APIRHVWLCPTYPQESVSVSAG-------SSSNNEVSTWNMETGLRQTVLWASDGAP-ILS------Y---- 1292 (1431)
T ss_pred --------CCcceEEeeccCCCCceEEEec-------ccCCCceeeeecccCcceEEEEcCCCCc-chh------h----
Confidence 111111 11111112222222 0367889999999887665554331100 000 0
Q ss_pred cceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeCCCCe
Q 043350 392 EMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGNGNR 471 (1133)
Q Consensus 392 e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~g~~ 471 (1133)
+..+.+.. + .+....+.+....+++.+.+|+.|..|+.||...-+
T Consensus 1293 ------~~Ps~~~~------------------------k-----p~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1293 ------ALPSNDAR------------------------K-----PDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred ------hcccccCC------------------------C-----CCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 00010000 0 001111223333455589999999999999995543
Q ss_pred eEEE--ecCCcceeE-EecCCCEEEEEecCCeEEE-EeCCC--------------CcceeeeccccCeEEeeec---ccc
Q 043350 472 VSDI--LHHQCAVQC-FCTYGSRMYVGYVSGYLQI-LDLDG--------------NLTASWIAHSSPVLKLAVG---VDH 530 (1133)
Q Consensus 472 l~~~--~~h~~~V~~-fs~dg~~Lasgs~DG~I~v-wd~~g--------------~~l~~~~~H~~~V~~l~fs---~~~ 530 (1133)
...+ .+.+..... .-..+..++.|+.--...+ +.... .....-..|.++|++|++. ..+
T Consensus 1338 ~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~l 1417 (1431)
T KOG1240|consen 1338 ISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPL 1417 (1431)
T ss_pred cccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccE
Confidence 3322 221111111 1111122333321100000 11100 0111223688999999988 458
Q ss_pred eeeecccCCeeecc
Q 043350 531 IYSLAAHGGIRGWT 544 (1133)
Q Consensus 531 L~S~s~Dg~I~lW~ 544 (1133)
|++++.||.|++|.
T Consensus 1418 lvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1418 LVSSSRDGVIKIWK 1431 (1431)
T ss_pred EEEecCCCeeeecC
Confidence 99999999999994
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.50 E-value=1.1e-12 Score=141.87 Aligned_cols=236 Identities=11% Similarity=0.149 Sum_probs=155.5
Q ss_pred eeccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCC
Q 043350 207 YESANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGG 283 (1133)
Q Consensus 207 ~~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~Dg 283 (1133)
...+|+++|..++|+| +.+.|||||.|.+|+||.+..... ......++..|.||...|--|+|+|... |+|+|.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l-~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGL-TRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCccc-ccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 3458999999999999 778999999999999999864221 1222366778999999999999999976 99999999
Q ss_pred cEEEEeCCCCceeeEeC-CCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCC
Q 043350 284 VIKIWPWESIEKSLSLK-PEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARS 362 (1133)
Q Consensus 284 tI~iWdl~~~~~~l~~~-~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~t 362 (1133)
+|.+|++.++...+.+. ++-.+ ... .+.++..+++. +.|..|+|||.++
T Consensus 155 ~v~iWnv~tgeali~l~hpd~i~-----------S~s-----------fn~dGs~l~Tt--------ckDKkvRv~dpr~ 204 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLDHPDMVY-----------SMS-----------FNRDGSLLCTT--------CKDKKVRVIDPRR 204 (472)
T ss_pred eEEEEeccCCceeeecCCCCeEE-----------EEE-----------eccCCceeeee--------cccceeEEEcCCC
Confidence 99999999865554443 33322 111 22333444444 7899999999999
Q ss_pred CceeEEEecCCcc-eeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCC
Q 043350 363 KELLKVFNIEGHI-ENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKR 441 (1133)
Q Consensus 363 g~~l~~~~~h~~~-v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~ 441 (1133)
++.+..-..|.+. -..+-|-.++.+ +.+|
T Consensus 205 ~~~v~e~~~heG~k~~Raifl~~g~i---------~tTG----------------------------------------- 234 (472)
T KOG0303|consen 205 GTVVSEGVAHEGAKPARAIFLASGKI---------FTTG----------------------------------------- 234 (472)
T ss_pred CcEeeecccccCCCcceeEEeccCce---------eeec-----------------------------------------
Confidence 9998877666543 222233223222 1111
Q ss_pred EEEEEECCCCeEEEEecCCeEEEEeCCC----CeeEEEecCCcceeE-EecCCCEEEEEe-cCCeEEEEeCCCCc--cee
Q 043350 442 TEAMVLTADGMIWSGCTNGLLVQWDGNG----NRVSDILHHQCAVQC-FCTYGSRMYVGY-VSGYLQILDLDGNL--TAS 513 (1133)
Q Consensus 442 V~sl~~spdg~L~sgs~DG~I~vWd~~g----~~l~~~~~h~~~V~~-fs~dg~~Lasgs-~DG~I~vwd~~g~~--l~~ 513 (1133)
++-.++..+-+||.+. -.+.++...++-+.- +.+|.+.|+.++ .|+.|+-|.++... +.-
T Consensus 235 ------------fsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hy 302 (472)
T KOG0303|consen 235 ------------FSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHY 302 (472)
T ss_pred ------------cccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEE
Confidence 1123456777887632 234555554444444 888888777655 79999999998653 332
Q ss_pred eec--cccCeEEeeecccceeeec
Q 043350 514 WIA--HSSPVLKLAVGVDHIYSLA 535 (1133)
Q Consensus 514 ~~~--H~~~V~~l~fs~~~L~S~s 535 (1133)
+.. -..+-..+.|..+.-+..+
T Consensus 303 ln~f~S~epQRG~g~mPKRGl~Vs 326 (472)
T KOG0303|consen 303 LNTFSSKEPQRGMGFMPKRGLDVS 326 (472)
T ss_pred ecccccCCccccccccccccccch
Confidence 222 1244556666544433333
No 176
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.50 E-value=8e-13 Score=146.03 Aligned_cols=254 Identities=13% Similarity=0.182 Sum_probs=174.9
Q ss_pred CeEEEEeCCCCCCCCCCCcccccccccC--CCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEE
Q 043350 234 GKIRSWKMDQTLDDANNPFKEGLSWQAH--RGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAAL 309 (1133)
Q Consensus 234 g~V~vWd~~~~~~~~~~~~~~~~~l~gH--~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~ 309 (1133)
.++++||+..... . -.+..| .-.|.+++|..... +++-+.|..|++|.-......+..
T Consensus 12 d~~kl~D~s~~~~------~--~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~---------- 73 (673)
T KOG4378|consen 12 DKTKLSDFSDLET------K--SEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPR---------- 73 (673)
T ss_pred CceEEeecccccC------c--cccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccce----------
Confidence 4799999875221 1 112222 22499999988776 556678899999976543111100
Q ss_pred eecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccc
Q 043350 310 LVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPV 389 (1133)
Q Consensus 310 ~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~ 389 (1133)
+...... ..+|-.......+.+++ +..++|+|||++...+.+.+.+|...|+++.+.-...+
T Consensus 74 ------~~k~~gd--~~~Cv~~~s~S~y~~sg--------G~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~Dey-- 135 (673)
T KOG4378|consen 74 ------VRKLTGD--NAFCVACASQSLYEISG--------GQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEY-- 135 (673)
T ss_pred ------eeccccc--hHHHHhhhhcceeeecc--------CcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcce--
Confidence 0000000 11111122334777888 89999999999987788889999999999999999999
Q ss_pred cccceEEEEeeCCCCccc--cccccccceeeccCCceEEEEEecCCcccCC-CCCEEEEEECCCC--eEEEEecCCeEEE
Q 043350 390 EDEMKVKFVSSNKKEKPH--GFLQRSRNAIMGAADAVRRVATRGAGAFVDD-TKRTEAMVLTADG--MIWSGCTNGLLVQ 464 (1133)
Q Consensus 390 e~e~~v~lasgs~Dg~i~--~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h-~~~V~sl~~spdg--~L~sgs~DG~I~v 464 (1133)
||+++..|.|. ....... .-. |... ...|.-+.+++.. .|.+++.+|.|.+
T Consensus 136 -------iAsvs~gGdiiih~~~t~~~-----------tt~------f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtl 191 (673)
T KOG4378|consen 136 -------IASVSDGGDIIIHGTKTKQK-----------TTT------FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTL 191 (673)
T ss_pred -------eEEeccCCcEEEEecccCcc-----------ccc------eecCCCCeEEEeecccccceeeEeeccCCeEEE
Confidence 99999998874 1111100 001 2222 2334567777776 8889999999999
Q ss_pred EeCCCC-eeEE-EecCCccee--EEecCCC-EEEEEecCCeEEEEeCCCCcceeeeccccCeEEeeec--ccceeeeccc
Q 043350 465 WDGNGN-RVSD-ILHHQCAVQ--CFCTYGS-RMYVGYVSGYLQILDLDGNLTASWIAHSSPVLKLAVG--VDHIYSLAAH 537 (1133)
Q Consensus 465 Wd~~g~-~l~~-~~~h~~~V~--~fs~dg~-~Lasgs~DG~I~vwd~~g~~l~~~~~H~~~V~~l~fs--~~~L~S~s~D 537 (1133)
||.+|+ ++.. ...|..+.. ||+|... +|++.+.|..|.+||...+....-.....|...|+|. |.+|+.|...
T Consensus 192 wDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~ 271 (673)
T KOG4378|consen 192 WDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSK 271 (673)
T ss_pred EeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCC
Confidence 999883 3333 345776655 4999765 7788899999999999865544455567788999999 8899999999
Q ss_pred CCeeeccccC
Q 043350 538 GGIRGWTFTS 547 (1133)
Q Consensus 538 g~I~lW~l~s 547 (1133)
|.|..+|+..
T Consensus 272 G~~i~YD~R~ 281 (673)
T KOG4378|consen 272 GELIAYDMRS 281 (673)
T ss_pred ceEEEEeccc
Confidence 9999999865
No 177
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.49 E-value=2.3e-12 Score=134.19 Aligned_cols=303 Identities=13% Similarity=0.122 Sum_probs=181.3
Q ss_pred cCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC-CCCEEEEEeCC-------CeEEEEeCCCC
Q 043350 173 QECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC-GNRLVWTGHKD-------GKIRSWKMDQT 244 (1133)
Q Consensus 173 ~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp-d~~~LaSgs~D-------g~V~vWd~~~~ 244 (1133)
.|+.|.+-+++.....+. ..++..|.+.|..++-+| +.++|+|+-.| -.+.||.+...
T Consensus 38 ~dNqVhll~~d~e~s~l~--------------skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~ 103 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELL--------------SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEP 103 (370)
T ss_pred CcceeEEEEecCccchhh--------------hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccc
Confidence 367777777765322211 113445677899999999 66777777653 24789998753
Q ss_pred CC-CCCCCcccccccc-cCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeE-e-CCCCceEEEEeecceEEEcc
Q 043350 245 LD-DANNPFKEGLSWQ-AHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLS-L-KPEEKHMAALLVERSFIDLR 319 (1133)
Q Consensus 245 ~~-~~~~~~~~~~~l~-gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~-~-~~~~~~l~s~~~d~s~~d~~ 319 (1133)
.. ....+++++..+. .|-+.|.||.|.|++. |++-. |..|.+|+++...+... + .+... +
T Consensus 104 ~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~-------e------- 168 (370)
T KOG1007|consen 104 LGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESA-------E------- 168 (370)
T ss_pred cCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccc-------c-------
Confidence 32 1223344555554 5567999999999988 77765 88999999987432111 1 00000 0
Q ss_pred CceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEE-ecCCcceeEEEeCCCCCccccccceEEEE
Q 043350 320 AQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVF-NIEGHIENRVDTQSVQDQPVEDEMKVKFV 398 (1133)
Q Consensus 320 ~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~-~~h~~~v~~l~~sp~g~~~~e~e~~v~la 398 (1133)
......+-.+.|.-++..++. ..|+++..||+|+......+ ..|++.|..++|+|+.+. -|+
T Consensus 169 ~~~~ftsg~WspHHdgnqv~t---------t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~--------~lv 231 (370)
T KOG1007|consen 169 MRHSFTSGAWSPHHDGNQVAT---------TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQH--------ILV 231 (370)
T ss_pred ccceecccccCCCCccceEEE---------eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceE--------EEE
Confidence 000111111112223322222 46889999999987666554 568888999999998775 178
Q ss_pred eeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC--eEEEEecCCeEEEEeCCC-CeeEEE
Q 043350 399 SSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG--MIWSGCTNGLLVQWDGNG-NRVSDI 475 (1133)
Q Consensus 399 sgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg--~L~sgs~DG~I~vWd~~g-~~l~~~ 475 (1133)
+++.||.|+.|+.|.... |--.+.+|..+|+++.|.|.. .|++|+.|..|.+|-... ..-..+
T Consensus 232 t~gDdgyvriWD~R~tk~--------------pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi 297 (370)
T KOG1007|consen 232 TCGDDGYVRIWDTRKTKF--------------PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQI 297 (370)
T ss_pred EcCCCccEEEEeccCCCc--------------cccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccccc
Confidence 888888888777663322 112245677777777777765 888888888888886522 000011
Q ss_pred e-cCCcceeEEecCCCEEEEEecCCeEEEEeCCCCcceeeeccccCeEEeeec--cc-ceeeecccCCeeecccc
Q 043350 476 L-HHQCAVQCFCTYGSRMYVGYVSGYLQILDLDGNLTASWIAHSSPVLKLAVG--VD-HIYSLAAHGGIRGWTFT 546 (1133)
Q Consensus 476 ~-~h~~~V~~fs~dg~~Lasgs~DG~I~vwd~~g~~l~~~~~H~~~V~~l~fs--~~-~L~S~s~Dg~I~lW~l~ 546 (1133)
. .+.. . =+++. ...-.++ -+...++.++..|.+.|.+++|+ .. .++|.|.||.+.+=++.
T Consensus 298 ~~~~de--s-e~e~~------dseer~k--pL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 298 EFEDDE--S-ESEDE------DSEERVK--PLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccc--c-cCcch------hhHHhcc--cccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 0 0000 0 00000 0001111 12234567888999999999999 44 46778999998875543
No 178
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.47 E-value=5.8e-12 Score=149.61 Aligned_cols=280 Identities=14% Similarity=0.130 Sum_probs=189.5
Q ss_pred cCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCC
Q 043350 173 QECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTLDDANNP 251 (1133)
Q Consensus 173 ~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~ 251 (1133)
.++.+.||++..... |...-...++|+|+.|+| +..+|+.|..+|.|.+||+..+.. ..+
T Consensus 220 ~~~~~~vW~~~~p~~-----------------Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~--~~~ 280 (555)
T KOG1587|consen 220 PDGVLLVWSLKNPNT-----------------PELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSD--TPP 280 (555)
T ss_pred CCceEEEEecCCCCC-----------------ceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCC--CCC
Confidence 345899999987522 223334567999999999 788999999999999999986332 112
Q ss_pred cccccccccCCCCeEEEEEeeC--Cc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccc
Q 043350 252 FKEGLSWQAHRGPVLAMIFSSQ--GD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGAC 328 (1133)
Q Consensus 252 ~~~~~~l~gH~~~V~sl~fsp~--g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~ 328 (1133)
.........|..+|+.+.|..+ +. ++|+|.||.|+.|+++...........+..
T Consensus 281 s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~----------------------- 337 (555)
T KOG1587|consen 281 SGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESK----------------------- 337 (555)
T ss_pred cccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccc-----------------------
Confidence 2233344678999999999876 23 999999999999987642110000000000
Q ss_pred cCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCcccc
Q 043350 329 SISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHG 408 (1133)
Q Consensus 329 ~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~ 408 (1133)
. ..+ ..+ .....+++++|.+.... +++.|+..|.|..
T Consensus 338 --~-----------------------------~~~---~~~-~~~~~~t~~~F~~~~p~--------~FiVGTe~G~v~~ 374 (555)
T KOG1587|consen 338 --K-----------------------------HKG---QQS-SKAVGATSLKFEPTDPN--------HFIVGTEEGKVYK 374 (555)
T ss_pred --c-----------------------------ccc---ccc-ccccceeeEeeccCCCc--------eEEEEcCCcEEEE
Confidence 0 000 000 01223567888875433 2889999999861
Q ss_pred --ccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCC--CCeeEEEecCCccee
Q 043350 409 --FLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGN--GNRVSDILHHQCAVQ 483 (1133)
Q Consensus 409 --~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~--g~~l~~~~~h~~~V~ 483 (1133)
..+. .... .+.+.+-..+..|.+.|.++.++|-+ .++..+.|.++++|... ..++..+..+...|+
T Consensus 375 ~~r~g~--------~~~~-~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~ 445 (555)
T KOG1587|consen 375 GCRKGY--------TPAP-EVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVT 445 (555)
T ss_pred EeccCC--------cccc-cccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceee
Confidence 1111 0000 03333333356788899999999988 44444449999999874 467777888888888
Q ss_pred E--EecCC-CEEEEEecCCeEEEEeCCC---CcceeeeccccCeEEeeec--ccceeeecccCCeeecccc
Q 043350 484 C--FCTYG-SRMYVGYVSGYLQILDLDG---NLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFT 546 (1133)
Q Consensus 484 ~--fs~dg-~~Lasgs~DG~I~vwd~~g---~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~ 546 (1133)
+ |||.- ..++++..||.|.+||+.. .+..+...+......+.++ ++.|+.|...|.+.+|++.
T Consensus 446 ~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 446 DVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred eeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 7 99975 5778888999999999863 4566666666666677777 7889999999999999985
No 179
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=2.4e-12 Score=138.26 Aligned_cols=294 Identities=14% Similarity=0.153 Sum_probs=181.4
Q ss_pred eeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEE
Q 043350 143 LELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLM 219 (1133)
Q Consensus 143 ~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la 219 (1133)
..+++|.+ -|.+|. +.++++|+ +.|..+++|+++..+..... + .-......|.+.|.||+
T Consensus 50 KD~~~H~G-------CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~-K---------PI~~~~~~H~SNIF~L~ 112 (609)
T KOG4227|consen 50 KDVREHTG-------CINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTP-K---------PIGVMEHPHRSNIFSLE 112 (609)
T ss_pred hhhhhhcc-------ccceeeeccCCeEEeecCCcceeeeechHHHHhhcCC-C---------CceeccCccccceEEEE
Confidence 45778988 899999 88999999 78899999999873221100 0 00122334678999999
Q ss_pred EeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccC---CCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCce
Q 043350 220 VDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAH---RGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEK 295 (1133)
Q Consensus 220 ~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH---~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~ 295 (1133)
|+..+..|++|..+++|..-|+.+ ++..-...| ++.|+.+..+|..+ |++.+.++.|.+||.+....
T Consensus 113 F~~~N~~~~SG~~~~~VI~HDiEt---------~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~ 183 (609)
T KOG4227|consen 113 FDLENRFLYSGERWGTVIKHDIET---------KQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN 183 (609)
T ss_pred EccCCeeEecCCCcceeEeeeccc---------ceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC
Confidence 999999999999999999999998 444455556 45999999999988 99999999999999986321
Q ss_pred ---eeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCc-eeEE---
Q 043350 296 ---SLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKE-LLKV--- 368 (1133)
Q Consensus 296 ---~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~-~l~~--- 368 (1133)
.+.....+. ......++| ....+++.. ...+.+.+||.+... .+..
T Consensus 184 ~~~~~~~AN~~~------------------~F~t~~F~P-~~P~Li~~~--------~~~~G~~~~D~R~~~~~~~~~~~ 236 (609)
T KOG4227|consen 184 PISLVLPANSGK------------------NFYTAEFHP-ETPALILVN--------SETGGPNVFDRRMQARPVYQRSM 236 (609)
T ss_pred CCceeeecCCCc------------------cceeeeecC-CCceeEEec--------cccCCCCceeeccccchHHhhhc
Confidence 111111111 111112222 122233334 567888899988432 2211
Q ss_pred EecCC---cceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEE
Q 043350 369 FNIEG---HIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAM 445 (1133)
Q Consensus 369 ~~~h~---~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl 445 (1133)
+.+-. ..-.++.|+|+|.+ +.+--....-..++ +....-.|....-.|+|-+ ....+.++
T Consensus 237 ~~~L~~~~~~~M~~~~~~~G~Q---------~msiRR~~~P~~~D------~~S~R~~V~k~D~N~~GY~--N~~T~KS~ 299 (609)
T KOG4227|consen 237 FKGLPQENTEWMGSLWSPSGNQ---------FMSIRRGKCPLYFD------FISQRCFVLKSDHNPNGYC--NIKTIKSM 299 (609)
T ss_pred cccCcccchhhhheeeCCCCCe---------ehhhhccCCCEEee------eecccceeEeccCCCCcce--eeeeeeee
Confidence 11111 12247789998877 54322111110111 1111112222222222222 12346677
Q ss_pred EECCCCeEEEEecCCeEEEEeCCC------------------------CeeEEEecCCcceeE--EecCCCEEEEEecCC
Q 043350 446 VLTADGMIWSGCTNGLLVQWDGNG------------------------NRVSDILHHQCAVQC--FCTYGSRMYVGYVSG 499 (1133)
Q Consensus 446 ~~spdg~L~sgs~DG~I~vWd~~g------------------------~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG 499 (1133)
+|..|-.+++|+.+-.|.+|.+-. +.+..+++|.+-++- |++...+|++.+...
T Consensus 300 ~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~ 379 (609)
T KOG4227|consen 300 TFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVEN 379 (609)
T ss_pred eeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhh
Confidence 787777899999999999997621 012345566666555 777777777777777
Q ss_pred eEEEEeC
Q 043350 500 YLQILDL 506 (1133)
Q Consensus 500 ~I~vwd~ 506 (1133)
.++||.-
T Consensus 380 ~~KlWS~ 386 (609)
T KOG4227|consen 380 SFKLWSD 386 (609)
T ss_pred heecccc
Confidence 7777753
No 180
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=6.2e-12 Score=149.94 Aligned_cols=289 Identities=13% Similarity=0.120 Sum_probs=186.6
Q ss_pred CeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccC---CCCeEEEEEeeCCc---EEEEeCCCcEEE
Q 043350 214 PTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAH---RGPVLAMIFSSQGD---LWSGGEGGVIKI 287 (1133)
Q Consensus 214 ~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH---~~~V~sl~fsp~g~---L~Sgs~DgtI~i 287 (1133)
+-..+.|+|-...++++...-.|+|||.+.+. .+..+..+ ...|+.+.+-...+ |++|+.||.|||
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~--------~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRI 1137 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGR--------LLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRI 1137 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCc--------eeccccCCCCCCCccceeeeecccchhheeeeccCceEEE
Confidence 45667788877888888877899999988622 22223222 56799999876544 999999999999
Q ss_pred EeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeE
Q 043350 288 WPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLK 367 (1133)
Q Consensus 288 Wdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~ 367 (1133)
|+--... .....++++...-+..-.. ....+.+.......+.+++++ .-..|+|||+....++.
T Consensus 1138 wk~y~~~------~~~~eLVTaw~~Ls~~~~~-~r~~~~v~dWqQ~~G~Ll~tG---------d~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1138 WKDYADK------WKKPELVTAWSSLSDQLPG-ARGTGLVVDWQQQSGHLLVTG---------DVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred ecccccc------cCCceeEEeeccccccCcc-CCCCCeeeehhhhCCeEEecC---------CeeEEEEEecccceeEe
Confidence 9753210 0222333331110000000 000000011112233344443 34678999999888887
Q ss_pred EEecCCc-ceeEEEeCC-CCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCC--EE
Q 043350 368 VFNIEGH-IENRVDTQS-VQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKR--TE 443 (1133)
Q Consensus 368 ~~~~h~~-~v~~l~~sp-~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~--V~ 443 (1133)
.+..... .++++.-+. .+.+ |++|..||.++.++.|.-.. ...|. ....|+.. |.
T Consensus 1202 diP~~s~t~vTaLS~~~~~gn~---------i~AGfaDGsvRvyD~R~a~~----ds~v~--------~~R~h~~~~~Iv 1260 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSADLVHGNI---------IAAGFADGSVRVYDRRMAPP----DSLVC--------VYREHNDVEPIV 1260 (1387)
T ss_pred ecccCCCccceeecccccCCce---------EEEeecCCceEEeecccCCc----cccce--------eecccCCcccce
Confidence 7765443 466665544 3577 99999999998776652211 01111 12345554 77
Q ss_pred EEEECCCC--eEEEEecCCeEEEEeCCCCee---EEEecCC--c-ceeE--EecCCCEEEEEecCCeEEEEeCCCCccee
Q 043350 444 AMVLTADG--MIWSGCTNGLLVQWDGNGNRV---SDILHHQ--C-AVQC--FCTYGSRMYVGYVSGYLQILDLDGNLTAS 513 (1133)
Q Consensus 444 sl~~spdg--~L~sgs~DG~I~vWd~~g~~l---~~~~~h~--~-~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~~l~~ 513 (1133)
.+.+.+.| .|++|+.||.|++||+..... -++..|. + .+++ ++.+...+|+|+. +.|+||++.|+.+..
T Consensus 1261 ~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~ 1339 (1387)
T KOG1517|consen 1261 HLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNI 1339 (1387)
T ss_pred eEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcc
Confidence 78888877 699999999999999965221 2222332 3 4777 7888999999998 999999999987776
Q ss_pred eecc-------ccCeEEeeec--ccceeeecccCCeeeccccCC
Q 043350 514 WIAH-------SSPVLKLAVG--VDHIYSLAAHGGIRGWTFTSP 548 (1133)
Q Consensus 514 ~~~H-------~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s~ 548 (1133)
++.+ .+.+.+|+|+ .-.++.|+.|.+|.++.-..+
T Consensus 1340 ~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1340 IKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 6654 3578999999 556777888999999975543
No 181
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.46 E-value=1.7e-12 Score=137.56 Aligned_cols=254 Identities=18% Similarity=0.200 Sum_probs=159.5
Q ss_pred CCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCC
Q 043350 167 TQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQ 243 (1133)
Q Consensus 167 g~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~ 243 (1133)
..++| |.-|.|||.|+....... .+.+|...|..+.+.| ..++|++||.|..||+|+++.
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~-----------------~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSK-----------------NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhcc-----------------ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 45565 888999999987743221 2446777899999999 468999999999999999997
Q ss_pred CCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCC------ceeeEeCCCCceEEEEeecceEE
Q 043350 244 TLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESI------EKSLSLKPEEKHMAALLVERSFI 316 (1133)
Q Consensus 244 ~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~------~~~l~~~~~~~~l~s~~~d~s~~ 316 (1133)
..+ .-...-+.||++.|.++.|+++|. |+|||.|.+|++|++... +.+..+.+++..
T Consensus 168 ~~C-----v~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~----------- 231 (385)
T KOG1034|consen 168 DVC-----VAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTT----------- 231 (385)
T ss_pred CeE-----EEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCcc-----------
Confidence 333 111224578999999999999999 999999999999999841 222223332221
Q ss_pred EccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEE
Q 043350 317 DLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVK 396 (1133)
Q Consensus 317 d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~ 396 (1133)
..+|.+. +.+.|.. +-..|...|.++.|-- ++
T Consensus 232 -----------~pfpt~~--------------------~~fp~fs------t~diHrnyVDCvrw~g--d~--------- 263 (385)
T KOG1034|consen 232 -----------RPFPTPK--------------------THFPDFS------TTDIHRNYVDCVRWFG--DF--------- 263 (385)
T ss_pred -----------CcCCccc--------------------ccccccc------ccccccchHHHHHHHh--hh---------
Confidence 0000000 0011110 1234666666666543 45
Q ss_pred EEeeCCCCccccccc-cccce---eeccCCceEEEEEecCCcccCCCCCEEEEEECCC--C-eEEEEecCCeEEEEeCCC
Q 043350 397 FVSSNKKEKPHGFLQ-RSRNA---IMGAADAVRRVATRGAGAFVDDTKRTEAMVLTAD--G-MIWSGCTNGLLVQWDGNG 469 (1133)
Q Consensus 397 lasgs~Dg~i~~~~~-~~~~~---~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spd--g-~L~sgs~DG~I~vWd~~g 469 (1133)
+++-|-++.|.-|.. +.... +........- .+.+.-....|+-+.|+-| + +|+.|...|.|.+||++.
T Consensus 264 ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti-----~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~ 338 (385)
T KOG1034|consen 264 ILSKSCENAIVCWKPGKLEESIHNVKPPESATTI-----LGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDN 338 (385)
T ss_pred eeecccCceEEEEecchhhhhhhccCCCccceee-----eeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCC
Confidence 667777776664433 21111 1111111111 1223344555666666554 4 999999999999999943
Q ss_pred -Ce--eEEEec--CCccee--EEecCCCEEEEEecCCeEEEEeC
Q 043350 470 -NR--VSDILH--HQCAVQ--CFCTYGSRMYVGYVSGYLQILDL 506 (1133)
Q Consensus 470 -~~--l~~~~~--h~~~V~--~fs~dg~~Lasgs~DG~I~vwd~ 506 (1133)
.. ..++.. ....|. ||+.||..|+..+.|++|.-||.
T Consensus 339 ~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 339 NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 22 222222 122333 39999999999999999999985
No 182
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.44 E-value=2.7e-13 Score=157.74 Aligned_cols=273 Identities=16% Similarity=0.242 Sum_probs=189.7
Q ss_pred CCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecC
Q 043350 98 GPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQE 174 (1133)
Q Consensus 98 ~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~D 174 (1133)
||-.+++. +-|+-.|.+++||++|..++||.+++ +.. +..++||.+ .++.++ +.++.++| +.|
T Consensus 188 gH~naVyc---a~fDrtg~~Iitgsdd~lvKiwS~et---~~~-lAs~rGhs~-------ditdlavs~~n~~iaaaS~D 253 (1113)
T KOG0644|consen 188 GHRNAVYC---AIFDRTGRYIITGSDDRLVKIWSMET---ARC-LASCRGHSG-------DITDLAVSSNNTMIAAASND 253 (1113)
T ss_pred hhhhheee---eeeccccceEeecCccceeeeeeccc---hhh-hccCCCCcc-------ccchhccchhhhhhhhcccC
Confidence 44444444 66899999999999999999999773 555 889999999 899999 77777777 889
Q ss_pred CcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCccc
Q 043350 175 CGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKE 254 (1133)
Q Consensus 175 g~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~ 254 (1133)
..|++|.+....- -.++.+|++.|++++|+|-. +.+.||++++||.+-... ...
T Consensus 254 ~vIrvWrl~~~~p-----------------vsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~-----~y~ 307 (1113)
T KOG0644|consen 254 KVIRVWRLPDGAP-----------------VSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPR-----IYV 307 (1113)
T ss_pred ceEEEEecCCCch-----------------HHHHhccccceeeeccCccc----cCCCCCceEecccccccc-----ccC
Confidence 9999999987422 22466788899999999954 778999999999883111 000
Q ss_pred ccccc-cCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCC
Q 043350 255 GLSWQ-AHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISS 332 (1133)
Q Consensus 255 ~~~l~-gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~ 332 (1133)
...+. .-..-+-++.|...+. ++|++.|+.-..|.+... .++.....+++... .
T Consensus 308 prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l----~~~~~~lif~t~ss--------------------d 363 (1113)
T KOG0644|consen 308 PRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL----AWRSNLLIFVTRSS--------------------D 363 (1113)
T ss_pred CCCCCcccccceeeeeccccccccccccCCcccccchhhHh----hhhccceEEEeccc--------------------c
Confidence 00111 1235677888888888 999999999999977531 11111111111100 0
Q ss_pred CCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccccc
Q 043350 333 TEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQR 412 (1133)
Q Consensus 333 ~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~ 412 (1133)
.+ .+..+. -.+..+.+|++.+|.+++.+.+|...+..+.++|-...
T Consensus 364 ~~-~~~~~a--------r~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~r------------------------- 409 (1113)
T KOG0644|consen 364 LS-SIVVTA--------RNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPR------------------------- 409 (1113)
T ss_pred cc-ccceee--------eeeeEeeeeecccchhhhhhcccccceeeeeecCCCcH-------------------------
Confidence 00 011111 33455667778888888877777777777777764433
Q ss_pred ccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeC-CCCeeEEE-ecCCcceeE-EecCC
Q 043350 413 SRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDG-NGNRVSDI-LHHQCAVQC-FCTYG 489 (1133)
Q Consensus 413 ~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~-~g~~l~~~-~~h~~~V~~-fs~dg 489 (1133)
...+++.||...|||+ .|..++.. .+|..-+.| ||+||
T Consensus 410 ---------------------------------------i~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdg 450 (1113)
T KOG0644|consen 410 ---------------------------------------IAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDG 450 (1113)
T ss_pred ---------------------------------------hhhhccCCCceEeeecccCCcceeeecccceeeccccCCCC
Confidence 1245677888999998 77555443 557777777 99999
Q ss_pred CEEEEEecCCeEEEEeCC
Q 043350 490 SRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 490 ~~Lasgs~DG~I~vwd~~ 507 (1133)
..++....-|.++|....
T Consensus 451 ts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 451 TSIALSDDHGQLYILGTG 468 (1113)
T ss_pred ceEecCCCCCceEEeccC
Confidence 999988888999998753
No 183
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=4.8e-12 Score=135.98 Aligned_cols=292 Identities=14% Similarity=0.137 Sum_probs=183.0
Q ss_pred eccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCccccccc-ccCCCCeEEEEEeeCCc-EEEEeCCCcE
Q 043350 208 ESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSW-QAHRGPVLAMIFSSQGD-LWSGGEGGVI 285 (1133)
Q Consensus 208 ~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l-~gH~~~V~sl~fsp~g~-L~Sgs~DgtI 285 (1133)
...|++.|.++.|+.++++|++|+.|..+++|.++..-. ...-+++... ..|+..|.|++|...+. |+||+.+++|
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~--~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV--RKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHh--hcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 347999999999999999999999999999999874211 1111333322 23578999999998777 9999999999
Q ss_pred EEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCc-
Q 043350 286 KIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKE- 364 (1133)
Q Consensus 286 ~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~- 364 (1133)
..-|+++......+..... ...++++..+|..+..+.. +.++.|.+||.+...
T Consensus 130 I~HDiEt~qsi~V~~~~~~----------------~~~VY~m~~~P~DN~~~~~----------t~~~~V~~~D~Rd~~~ 183 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNN----------------RGDVYHMDQHPTDNTLIVV----------TRAKLVSFIDNRDRQN 183 (609)
T ss_pred EeeecccceeeeeecccCc----------------ccceeecccCCCCceEEEE----------ecCceEEEEeccCCCC
Confidence 9999987433322222211 1234555555654333333 457888889988654
Q ss_pred eeEEE--ecCCcceeEEEeCCCC-CccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCC
Q 043350 365 LLKVF--NIEGHIENRVDTQSVQ-DQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKR 441 (1133)
Q Consensus 365 ~l~~~--~~h~~~v~~l~~sp~g-~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~ 441 (1133)
....+ .........+.|+|.. .+ |++.+..+-+-.|+.+..+. ++...... ..+......
T Consensus 184 ~~~~~~~AN~~~~F~t~~F~P~~P~L---------i~~~~~~~G~~~~D~R~~~~------~~~~~~~~--~~L~~~~~~ 246 (609)
T KOG4227|consen 184 PISLVLPANSGKNFYTAEFHPETPAL---------ILVNSETGGPNVFDRRMQAR------PVYQRSMF--KGLPQENTE 246 (609)
T ss_pred CCceeeecCCCccceeeeecCCCcee---------EEeccccCCCCceeeccccc------hHHhhhcc--ccCcccchh
Confidence 33222 2234456788898854 34 77888877776555443221 11110000 001111111
Q ss_pred EEEEEECCCC-eEEEEecCCeEEEEeCCCCeeEEEec-CCc-------cee--EEecCCCEEEEEecCCeEEEEeCC---
Q 043350 442 TEAMVLTADG-MIWSGCTNGLLVQWDGNGNRVSDILH-HQC-------AVQ--CFCTYGSRMYVGYVSGYLQILDLD--- 507 (1133)
Q Consensus 442 V~sl~~spdg-~L~sgs~DG~I~vWd~~g~~l~~~~~-h~~-------~V~--~fs~dg~~Lasgs~DG~I~vwd~~--- 507 (1133)
-..+.|+|+| .+.+--....=.+||+-.+.+-.++. |.. .+. ||..|- .+++|+.+-.|++|.+-
T Consensus 247 ~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ 325 (609)
T KOG4227|consen 247 WMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRAN 325 (609)
T ss_pred hhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCc
Confidence 2345577887 55554444445567774433333332 221 111 244444 49999999999999862
Q ss_pred ---C------------------CcceeeeccccCeEEeeec--ccceeeecccCCeeeccc
Q 043350 508 ---G------------------NLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTF 545 (1133)
Q Consensus 508 ---g------------------~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l 545 (1133)
| +.+..++||...+..|.|+ ...|+|.+-...+++|.-
T Consensus 326 ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 326 DSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred cccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 1 1245688999999999999 667788888999999973
No 184
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.44 E-value=1.8e-12 Score=133.61 Aligned_cols=265 Identities=18% Similarity=0.219 Sum_probs=181.9
Q ss_pred CCCCcccccCCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeecc-CCCccccccceEEEEE-eCC
Q 043350 89 PVNEDYVCPGPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRP-HPLKETQAGRFLRNIA-CTD 166 (1133)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~-H~~~~~~~g~~V~~v~-s~d 166 (1133)
+|+.-++..+|.+.+.+ +-|..++. |.+|...|.+++|..++ +.+...++. |.. .|+.+. -++
T Consensus 3 pPdP~fvLRp~~~~v~s---~~fqa~~r-L~sg~~~G~V~~w~lqt----~r~~~~~r~~g~~-------~it~lq~~p~ 67 (323)
T KOG0322|consen 3 PPDPFFVLRPHSSSVTS---VLFQANER-LMSGLSVGIVKMWVLQT----ERDLPLIRLFGRL-------FITNLQSIPN 67 (323)
T ss_pred CCCCeeEeccccchhee---hhhccchh-hhcccccceEEEEEeec----Cccchhhhhhccc-------eeeceeecCC
Confidence 34555555556555555 77888776 88999999999999984 443667774 445 899998 777
Q ss_pred CCeEE-ecCCcEEEeeCCC--------------CCCcCcCCCcc--c------c-CCCCC-----CC--------ceeec
Q 043350 167 TQLWA-GQECGVRFWNLED--------------SYEPGAGIGGR--V------R-RGDED-----AA--------PFYES 209 (1133)
Q Consensus 167 g~lla-s~Dg~VrvWdl~~--------------~~~~~~gh~~~--v------~-~g~~~-----~~--------~~~~~ 209 (1133)
+++.. +.|..+.+|++.. .++.+.-+... . + +|..+ .. +-...
T Consensus 68 d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~ 147 (323)
T KOG0322|consen 68 DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSER 147 (323)
T ss_pred cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhc
Confidence 88888 9999999999876 11111111100 0 0 11100 00 01112
Q ss_pred cCCCCeEEEEEeC-CCC--EEEEEeCCCeEEEEeCCCCCC--CCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCC
Q 043350 210 ANTSPTMCLMVDC-GNR--LVWTGHKDGKIRSWKMDQTLD--DANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGG 283 (1133)
Q Consensus 210 ~h~s~V~~la~sp-d~~--~LaSgs~Dg~V~vWd~~~~~~--~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~Dg 283 (1133)
...+.|+|..+.. ++. +|+.|-.+|.|-+||+..+.. +-....+.......|.++|.++.|.+.-. =++|+.+.
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d 227 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD 227 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc
Confidence 2466788888765 333 467888899999999987432 11122233445678999999999987755 68888888
Q ss_pred cEEEEeCCCCceee------EeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeE
Q 043350 284 VIKIWPWESIEKSL------SLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSL 357 (1133)
Q Consensus 284 tI~iWdl~~~~~~l------~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~l 357 (1133)
.+..|+++....++ ....-+.. .+.+ -++.+++++. +.|+.|++
T Consensus 228 kl~~~Sl~~s~gslq~~~e~~lknpGv~---------gvrI-------------RpD~KIlATA--------GWD~RiRV 277 (323)
T KOG0322|consen 228 KLVMYSLNHSTGSLQIRKEITLKNPGVS---------GVRI-------------RPDGKILATA--------GWDHRIRV 277 (323)
T ss_pred cceeeeeccccCcccccceEEecCCCcc---------ceEE-------------ccCCcEEeec--------ccCCcEEE
Confidence 99999886521111 11111111 2222 3677778888 99999999
Q ss_pred eecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccc
Q 043350 358 WDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPH 407 (1133)
Q Consensus 358 WD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~ 407 (1133)
|..++.+++..+.-|...|++++|+|+... +|++|+|++|-
T Consensus 278 yswrtl~pLAVLkyHsagvn~vAfspd~~l---------mAaaskD~rIS 318 (323)
T KOG0322|consen 278 YSWRTLNPLAVLKYHSAGVNAVAFSPDCEL---------MAAASKDARIS 318 (323)
T ss_pred EEeccCCchhhhhhhhcceeEEEeCCCCch---------hhhccCCceEE
Confidence 999999999999999999999999999889 99999999884
No 185
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=8.9e-13 Score=159.84 Aligned_cols=221 Identities=15% Similarity=0.199 Sum_probs=168.1
Q ss_pred EEEEecCCCeEEeccCCCC--CCCCCCeeeeccCCCccccccceEEEEE-eC-CCCeEE--ecCCcEEEeeCCCCCCcCc
Q 043350 117 FIGSGGGTGIFKVPSRAAV--HPGRPPCLELRPHPLKETQAGRFLRNIA-CT-DTQLWA--GQECGVRFWNLEDSYEPGA 190 (1133)
Q Consensus 117 ~lasgs~dg~irlW~~~~~--~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~-dg~lla--s~Dg~VrvWdl~~~~~~~~ 190 (1133)
.||.|..||.|.+|+.... ......+.+...|.+ .|..+. .+ .+.+|| +.||.|.|||+.+....+
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G-------~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~- 153 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTG-------PVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPF- 153 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCC-------ceeeeeccccCCceeeccCCCCcEEEeccCCcCCCC-
Confidence 5999999999999997753 222334667788999 999999 66 455888 789999999998843322
Q ss_pred CCCccccCCCCCCCceee--ccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccC--CCCe
Q 043350 191 GIGGRVRRGDEDAAPFYE--SANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAH--RGPV 265 (1133)
Q Consensus 191 gh~~~v~~g~~~~~~~~~--~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH--~~~V 265 (1133)
.. ..-.+.|.||+|+. ..++|++|+.+|++.|||++.. +++..+..| +..+
T Consensus 154 ----------------~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~--------~pii~ls~~~~~~~~ 209 (1049)
T KOG0307|consen 154 ----------------TPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK--------KPIIKLSDTPGRMHC 209 (1049)
T ss_pred ----------------CCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC--------CcccccccCCCccce
Confidence 11 12345799999998 5778999999999999999961 445555555 3458
Q ss_pred EEEEEeeCCc--EEEEeCCC---cEEEEeCCC---CceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEE
Q 043350 266 LAMIFSSQGD--LWSGGEGG---VIKIWPWES---IEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKC 337 (1133)
Q Consensus 266 ~sl~fsp~g~--L~Sgs~Dg---tI~iWdl~~---~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~ 337 (1133)
..|+|+|++. |++++.|. .|.+||++. ..+.+..|..+.. .+++ ...+-.+
T Consensus 210 S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gil---------slsW------------c~~D~~l 268 (1049)
T KOG0307|consen 210 SVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGIL---------SLSW------------CPQDPRL 268 (1049)
T ss_pred eeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccccee---------eecc------------CCCCchh
Confidence 8999999977 88888765 699999886 3444555555544 2222 1234455
Q ss_pred EEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCC-ccccccceEEEEeeCCCCccc
Q 043350 338 MLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQD-QPVEDEMKVKFVSSNKKEKPH 407 (1133)
Q Consensus 338 l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~-~~~e~e~~v~lasgs~Dg~i~ 407 (1133)
++++ +.|+.|.+|+..+++.+..+...++++..+.|+|... . |++++.||+|.
T Consensus 269 llSs--------gkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~---------~A~asfdgkI~ 322 (1049)
T KOG0307|consen 269 LLSS--------GKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSV---------MAAASFDGKIS 322 (1049)
T ss_pred hhcc--------cCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcch---------hhhheecccee
Confidence 6666 8999999999999999999999999999999999655 6 89999999985
No 186
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=1.8e-11 Score=124.75 Aligned_cols=293 Identities=16% Similarity=0.208 Sum_probs=178.9
Q ss_pred CeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCC--CCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeC
Q 043350 214 PTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDA--NNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPW 290 (1133)
Q Consensus 214 ~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~--~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl 290 (1133)
.|..-+|+|.+++|+.|..+|+|.+..+....... .+.-..+...++|.++|+.++|. .. |++|+. |.|+-|.+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeee
Confidence 35566788999999999999999999986422211 11113445669999999999998 34 777765 99999999
Q ss_pred CCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEec-CCceEEEecCCCceeEeecCCCceeEEE
Q 043350 291 ESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSD-HARARVWCAQPLSFSLWDARSKELLKVF 369 (1133)
Q Consensus 291 ~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~-d~~i~vwss~d~~I~lWD~~tg~~l~~~ 369 (1133)
+....+....+ .|.......+. ..+-++...+.-. .....++.++|+.+.-||+.+|+..++|
T Consensus 89 ~E~~es~~~K~-------------lwe~~~P~~~~---~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 89 NEEEESLATKR-------------LWEVKIPMQVD---AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred hhhhhhccchh-------------hhhhcCccccC---cccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEE
Confidence 76433221111 11111000000 0011222222221 2222333367899999999999999999
Q ss_pred ecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCccc-CCCCCEEEEEEC
Q 043350 370 NIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFV-DDTKRTEAMVLT 448 (1133)
Q Consensus 370 ~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~-~h~~~V~sl~~s 448 (1133)
.+|++.+.++.--..... +++|+.||+++.|+.+..+...- + ...-+|+ .+. ....+|.+++.+
T Consensus 153 rGHtDYvH~vv~R~~~~q---------ilsG~EDGtvRvWd~kt~k~v~~----i-e~yk~~~-~lRp~~g~wigala~~ 217 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQ---------ILSGAEDGTVRVWDTKTQKHVSM----I-EPYKNPN-LLRPDWGKWIGALAVN 217 (325)
T ss_pred cCCcceeeeeeecccCcc---------eeecCCCccEEEEeccccceeEE----e-ccccChh-hcCcccCceeEEEecc
Confidence 999999999988555556 88999999999887664433110 0 0000111 122 234567777765
Q ss_pred CCCeEEEEecCCeEEEEeC-CCCeeEEEecCCcceeEEecCCCEEEEEecCCeEEEEeCCCCcceeeeccccCeEEeeec
Q 043350 449 ADGMIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQCFCTYGSRMYVGYVSGYLQILDLDGNLTASWIAHSSPVLKLAVG 527 (1133)
Q Consensus 449 pdg~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~fs~dg~~Lasgs~DG~I~vwd~~g~~l~~~~~H~~~V~~l~fs 527 (1133)
.| ++++| ....+.+|.+ ...+...|.. ...|....-+.+.+++++..+.|.-|.+.|.+......-+...++..++
T Consensus 218 ed-WlvCG-gGp~lslwhLrsse~t~vfpi-pa~v~~v~F~~d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~ 294 (325)
T KOG0649|consen 218 ED-WLVCG-GGPKLSLWHLRSSESTCVFPI-PARVHLVDFVDDCVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQ 294 (325)
T ss_pred Cc-eEEec-CCCceeEEeccCCCceEEEec-ccceeEeeeecceEEEeccccceeeeeeccEEEEeccCCccceeeeccc
Confidence 54 44444 4567999999 4455555543 2334444445667888888889999999986655555444444555555
Q ss_pred ---ccceeeecccCCeeec
Q 043350 528 ---VDHIYSLAAHGGIRGW 543 (1133)
Q Consensus 528 ---~~~L~S~s~Dg~I~lW 543 (1133)
-+.|-.++....+.+.
T Consensus 295 ~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 295 TSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred CCceEEEEecccceeeeee
Confidence 2333334444444443
No 187
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.41 E-value=6.1e-10 Score=129.71 Aligned_cols=324 Identities=20% Similarity=0.326 Sum_probs=213.1
Q ss_pred eeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEE
Q 043350 144 ELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMV 220 (1133)
Q Consensus 144 ~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~ 220 (1133)
.+..|.. .+..+. .+.+..++ +.|+.+.+|+........ ......+...+..+.+
T Consensus 60 ~~~~~~~-------~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~ 117 (466)
T COG2319 60 LLRGHED-------SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLI---------------KSLEGLHDSSVSKLAL 117 (466)
T ss_pred eeeeccc-------eEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeE---------------EEEeccCCCceeeEEE
Confidence 3456666 888888 77777777 669999999988753111 0011111135566666
Q ss_pred -eCCCC-EEEEEeC-CCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeC-CCcEEEEeCCCC--
Q 043350 221 -DCGNR-LVWTGHK-DGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGE-GGVIKIWPWESI-- 293 (1133)
Q Consensus 221 -spd~~-~LaSgs~-Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~-DgtI~iWdl~~~-- 293 (1133)
++++. .++..+. |+.+.+|+... .......+..|...|.+++|+|++. +++++. |+.+++|+....
T Consensus 118 ~~~~~~~~~~~~~~~d~~~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (466)
T COG2319 118 SSPDGNSILLASSSLDGTVKLWDLST-------PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP 190 (466)
T ss_pred ECCCcceEEeccCCCCccEEEEEecC-------CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce
Confidence 77777 5555444 99999999974 1155668899999999999999998 888885 999999999762
Q ss_pred ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeE-EEecC
Q 043350 294 EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLK-VFNIE 372 (1133)
Q Consensus 294 ~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~-~~~~h 372 (1133)
...+..+..... .+.+ .+... .++++. +.|+.|.+||...+..+. .+..|
T Consensus 191 ~~~~~~~~~~v~---------~~~~-----------~~~~~-~~~~~~--------~~d~~i~~wd~~~~~~~~~~~~~~ 241 (466)
T COG2319 191 LSTLAGHTDPVS---------SLAF-----------SPDGG-LLIASG--------SSDGTIRLWDLSTGKLLRSTLSGH 241 (466)
T ss_pred EEeeccCCCceE---------EEEE-----------cCCcc-eEEEEe--------cCCCcEEEEECCCCcEEeeecCCC
Confidence 112211111111 1111 12222 244444 778999999999888888 68888
Q ss_pred CcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-
Q 043350 373 GHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG- 451 (1133)
Q Consensus 373 ~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg- 451 (1133)
.... -..|++++.. +++++.|+.++.|+.+.... .+... ..|...+.++.+.|++
T Consensus 242 ~~~~-~~~~~~~~~~---------~~~~~~d~~~~~~~~~~~~~------~~~~~--------~~~~~~v~~~~~~~~~~ 297 (466)
T COG2319 242 SDSV-VSSFSPDGSL---------LASGSSDGTIRLWDLRSSSS------LLRTL--------SGHSSSVLSVAFSPDGK 297 (466)
T ss_pred Ccce-eEeECCCCCE---------EEEecCCCcEEEeeecCCCc------EEEEE--------ecCCccEEEEEECCCCC
Confidence 7775 4489999877 88999999997555442221 01111 2457788888999977
Q ss_pred eEEEEecCCeEEEEeCCC-CeeEEEe--cCCcceeE--EecCCCEEEEE-ecCCeEEEEeCCCCc-ceeeeccccCeEEe
Q 043350 452 MIWSGCTNGLLVQWDGNG-NRVSDIL--HHQCAVQC--FCTYGSRMYVG-YVSGYLQILDLDGNL-TASWIAHSSPVLKL 524 (1133)
Q Consensus 452 ~L~sgs~DG~I~vWd~~g-~~l~~~~--~h~~~V~~--fs~dg~~Lasg-s~DG~I~vwd~~g~~-l~~~~~H~~~V~~l 524 (1133)
.+++++.|+.+.+|+... ....... .|...+.. +.+++..++.+ ..|+.+++|++.... ......+. .+..+
T Consensus 298 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~ 376 (466)
T COG2319 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSV 376 (466)
T ss_pred EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEE
Confidence 777799999999998854 4444444 67666666 52233566666 688999999987544 22222222 26666
Q ss_pred eecc-cceee-ecccCCeeeccccCCCC
Q 043350 525 AVGV-DHIYS-LAAHGGIRGWTFTSPSP 550 (1133)
Q Consensus 525 ~fs~-~~L~S-~s~Dg~I~lW~l~s~~~ 550 (1133)
.+.. ..+++ ++.++.+.+|+......
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (466)
T COG2319 377 SFSPDGRVVSSGSTDGTVRLWDLSTGSL 404 (466)
T ss_pred EECCCCCEEEEecCCCceEEEecccCee
Confidence 6653 23333 68899999999876443
No 188
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=5.9e-12 Score=139.65 Aligned_cols=301 Identities=15% Similarity=0.140 Sum_probs=208.1
Q ss_pred eeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEE
Q 043350 143 LELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLM 219 (1133)
Q Consensus 143 ~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la 219 (1133)
..|.+|.+ -|..|. ...|.+++ |.|..|.+||+......+.. .++|...|.-..
T Consensus 136 ~kL~~H~G-------cVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f----------------~SGH~~NvfQaK 192 (559)
T KOG1334|consen 136 KKLNKHKG-------CVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF----------------ESGHCNNVFQAK 192 (559)
T ss_pred hcccCCCC-------ccceeeecccCceeeccCccceEEeehhhccCccccc----------------ccccccchhhhh
Confidence 45788998 899998 88899999 88999999999874433322 224555555555
Q ss_pred EeC--CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCce
Q 043350 220 VDC--GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEK 295 (1133)
Q Consensus 220 ~sp--d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~ 295 (1133)
|-| +.+.|++++.||.|++=.+..... ..-...+..|.++|.-++.-|+.. |.|++.|+.++-.|++....
T Consensus 193 FiP~s~d~ti~~~s~dgqvr~s~i~~t~~-----~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~p 267 (559)
T KOG1334|consen 193 FIPFSGDRTIVTSSRDGQVRVSEILETGY-----VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVP 267 (559)
T ss_pred ccCCCCCcCceeccccCceeeeeeccccc-----eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCc
Confidence 555 567899999999999988764211 233556788999999999999877 99999999999888764211
Q ss_pred eeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcc
Q 043350 296 SLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHI 375 (1133)
Q Consensus 296 ~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~ 375 (1133)
.-. ++ +. ...+.. .-.
T Consensus 268 a~~--------------------------------------~~-cr-------------------~~~~~~------~v~ 283 (559)
T KOG1334|consen 268 AEK--------------------------------------FV-CR-------------------EADEKE------RVG 283 (559)
T ss_pred cce--------------------------------------ee-ee-------------------ccCCcc------cee
Confidence 100 00 00 000000 002
Q ss_pred eeEEEeCCCCC-ccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eE
Q 043350 376 ENRVDTQSVQD-QPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MI 453 (1133)
Q Consensus 376 v~~l~~sp~g~-~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L 453 (1133)
...++..|... . +++|+.|..++.++++....-. ....+. .|.|.-......-.|++++++.++ -|
T Consensus 284 L~~Ia~~P~nt~~---------faVgG~dqf~RvYD~R~~~~e~-~n~~~~--~f~p~hl~~d~~v~ITgl~Ysh~~sEl 351 (559)
T KOG1334|consen 284 LYTIAVDPRNTNE---------FAVGGSDQFARVYDQRRIDKEE-NNGVLD--KFCPHHLVEDDPVNITGLVYSHDGSEL 351 (559)
T ss_pred eeeEecCCCCccc---------cccCChhhhhhhhcccchhhcc-ccchhh--hcCCccccccCcccceeEEecCCccce
Confidence 33566777554 5 8889988888766666443211 111111 233333333455679999999888 77
Q ss_pred EEEecCCeEEEEeC---CC----------CeeEE-EecCCc--ceeE---EecCCCEEEEEecCCeEEEEeCCC-Cccee
Q 043350 454 WSGCTNGLLVQWDG---NG----------NRVSD-ILHHQC--AVQC---FCTYGSRMYVGYVSGYLQILDLDG-NLTAS 513 (1133)
Q Consensus 454 ~sgs~DG~I~vWd~---~g----------~~l~~-~~~h~~--~V~~---fs~dg~~Lasgs~DG~I~vwd~~g-~~l~~ 513 (1133)
.++..|-.|+++.. .| ..+.. +++|.. .|.+ |-|..+|+++|+.-|.|.||+-.+ +++.-
T Consensus 352 LaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~ 431 (559)
T KOG1334|consen 352 LASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRF 431 (559)
T ss_pred eeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHH
Confidence 77788888999964 23 22223 667654 3444 888899999999999999999875 67777
Q ss_pred eeccccCeEEeeec--ccceeeecccCCeeeccccC
Q 043350 514 WIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 514 ~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s 547 (1133)
+.|....|++|.-+ -..|+|.|-|.-|+||.-..
T Consensus 432 MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 432 MEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred hhcccceEeccCCCCCCchhhccCCccceeeecCCc
Confidence 78877789999888 78899999999999998633
No 189
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.41 E-value=4e-13 Score=156.33 Aligned_cols=237 Identities=16% Similarity=0.205 Sum_probs=176.2
Q ss_pred eccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEE
Q 043350 208 ESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIK 286 (1133)
Q Consensus 208 ~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~ 286 (1133)
+.+|+.+|+|++|+..|.++++|+.|..|+||.++++ .++..+.||.+.|+.++.+.+.. ++++|.|..|+
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~--------~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA--------RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIR 257 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccch--------hhhccCCCCccccchhccchhhhhhhhcccCceEE
Confidence 4579999999999999999999999999999998862 45778899999999999988777 99999999999
Q ss_pred EEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCcee
Q 043350 287 IWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELL 366 (1133)
Q Consensus 287 iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l 366 (1133)
+|.+ +++.++
T Consensus 258 vWrl----------------------------------------------------------------------~~~~pv 267 (1113)
T KOG0644|consen 258 VWRL----------------------------------------------------------------------PDGAPV 267 (1113)
T ss_pred EEec----------------------------------------------------------------------CCCchH
Confidence 9977 345566
Q ss_pred EEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEE
Q 043350 367 KVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMV 446 (1133)
Q Consensus 367 ~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~ 446 (1133)
..+.+|.+.|++++|+| ..+.+.||+++.|+.+..- ..+.|.-.-......+.++.
T Consensus 268 svLrghtgavtaiafsP-------------~~sss~dgt~~~wd~r~~~-----------~~y~prp~~~~~~~~~~s~~ 323 (1113)
T KOG0644|consen 268 SVLRGHTGAVTAIAFSP-------------RASSSDDGTCRIWDARLEP-----------RIYVPRPLKFTEKDLVDSIL 323 (1113)
T ss_pred HHHhccccceeeeccCc-------------cccCCCCCceEeccccccc-----------cccCCCCCCcccccceeeee
Confidence 67778888888888888 3366788888766555100 01111100011224456666
Q ss_pred ECCCC-eEEEEecCCeEEEEeCCC---CeeEEEecCCcceeEEecC-CCEEEEEecCCeEEEEeCC-CCcceeeeccccC
Q 043350 447 LTADG-MIWSGCTNGLLVQWDGNG---NRVSDILHHQCAVQCFCTY-GSRMYVGYVSGYLQILDLD-GNLTASWIAHSSP 520 (1133)
Q Consensus 447 ~spdg-~L~sgs~DG~I~vWd~~g---~~l~~~~~h~~~V~~fs~d-g~~Lasgs~DG~I~vwd~~-g~~l~~~~~H~~~ 520 (1133)
|-.++ .+.||+.|+.-..|...- +....+. ++ .+.| ..+.+++-.+-.+++|++. |.++..+.+|.+.
T Consensus 324 ~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif-----~t-~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~ 397 (1113)
T KOG0644|consen 324 FENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIF-----VT-RSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDE 397 (1113)
T ss_pred ccccccccccccCCcccccchhhHhhhhccceEE-----Ee-ccccccccceeeeeeeEeeeeecccchhhhhhcccccc
Confidence 77777 899999999988886632 1111110 01 1112 2467777788999999986 6788889999999
Q ss_pred eEEeeec---ccceeeecccCCeeeccccCCCCch
Q 043350 521 VLKLAVG---VDHIYSLAAHGGIRGWTFTSPSPLD 552 (1133)
Q Consensus 521 V~~l~fs---~~~L~S~s~Dg~I~lW~l~s~~~ld 552 (1133)
+..|.++ .....+++.||...+||+-.+-++.
T Consensus 398 ~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik 432 (1113)
T KOG0644|consen 398 VYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIK 432 (1113)
T ss_pred eeeeeecCCCcHhhhhccCCCceEeeecccCCcce
Confidence 9999998 6677799999999999998766653
No 190
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.40 E-value=4.7e-12 Score=134.29 Aligned_cols=280 Identities=13% Similarity=0.154 Sum_probs=186.5
Q ss_pred CCCCeEE-ecCCcEEEeeCCCCC--CcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC----CCCEEEEEeCCCeEE
Q 043350 165 TDTQLWA-GQECGVRFWNLEDSY--EPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC----GNRLVWTGHKDGKIR 237 (1133)
Q Consensus 165 ~dg~lla-s~Dg~VrvWdl~~~~--~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp----d~~~LaSgs~Dg~V~ 237 (1133)
.+-+.+| .....+.+++..... ..++.- .-.-|....+.++|+- ...+||.|+.-|.|+
T Consensus 53 ~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y--------------~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIr 118 (385)
T KOG1034|consen 53 DEPQVFATVGGNRVTIYECPGDGGIRLLQSY--------------ADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIR 118 (385)
T ss_pred CCCceEEEeCCcEEEEEEECCccceeeeeec--------------cCCCCCcceEEEEEEecCCCCCeeEEeecceeEEE
Confidence 4556777 666778888765521 221110 0112333456666654 255789999999999
Q ss_pred EEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceE
Q 043350 238 SWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSF 315 (1133)
Q Consensus 238 vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~ 315 (1133)
|.|+..+ +....+.+|.+.|+.|.|.|+.. |+|||.|.+||+|++++..-
T Consensus 119 Vid~~~~--------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C-------------------- 170 (385)
T KOG1034|consen 119 VIDVVSG--------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC-------------------- 170 (385)
T ss_pred EEecchh--------hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE--------------------
Confidence 9998762 44567899999999999999975 99999999999999864110
Q ss_pred EEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceE
Q 043350 316 IDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKV 395 (1133)
Q Consensus 316 ~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v 395 (1133)
.++.. -+.+|.+.|.+++|++++.+
T Consensus 171 --------------------v~VfG---------------------------G~egHrdeVLSvD~~~~gd~-------- 195 (385)
T KOG1034|consen 171 --------------------VAVFG---------------------------GVEGHRDEVLSVDFSLDGDR-------- 195 (385)
T ss_pred --------------------EEEec---------------------------ccccccCcEEEEEEcCCCCe--------
Confidence 01111 24678899999999999999
Q ss_pred EEEeeCCCCccccccccccceeeccCCceEEEEEecCCc----------------ccCCCCCEEEEEECCCCeEEEEecC
Q 043350 396 KFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGA----------------FVDDTKRTEAMVLTADGMIWSGCTN 459 (1133)
Q Consensus 396 ~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~----------------~~~h~~~V~sl~~spdg~L~sgs~D 459 (1133)
|++++.|.+++.|....... ..+-. .+..++|++. -.-|...|-|+.|-- .++++-+-+
T Consensus 196 -i~ScGmDhslk~W~l~~~~f-~~~lE--~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g-d~ilSksce 270 (385)
T KOG1034|consen 196 -IASCGMDHSLKLWRLNVKEF-KNKLE--LSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG-DFILSKSCE 270 (385)
T ss_pred -eeccCCcceEEEEecChhHH-hhhhh--hhcccCCCCccCcCCccccccccccccccccchHHHHHHHh-hheeecccC
Confidence 99999999998554331110 00000 0122222222 122444444444432 277888888
Q ss_pred CeEEEEeC-C-C-------------CeeEEEecCCcceeE----EecCCCEEEEEecCCeEEEEeCCCC-c-ceeeecc-
Q 043350 460 GLLVQWDG-N-G-------------NRVSDILHHQCAVQC----FCTYGSRMYVGYVSGYLQILDLDGN-L-TASWIAH- 517 (1133)
Q Consensus 460 G~I~vWd~-~-g-------------~~l~~~~~h~~~V~~----fs~dg~~Lasgs~DG~I~vwd~~g~-~-l~~~~~H- 517 (1133)
+.|..|.. + + ..+.++......|+- |.+-++.||.|...|.|++||++.. + ..+-..|
T Consensus 271 naI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s 350 (385)
T KOG1034|consen 271 NAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHS 350 (385)
T ss_pred ceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEec
Confidence 89999965 1 1 234555555666664 7777899999999999999999853 2 2222223
Q ss_pred --ccCeEEeeec--ccceeeecccCCeeecccc
Q 043350 518 --SSPVLKLAVG--VDHIYSLAAHGGIRGWTFT 546 (1133)
Q Consensus 518 --~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~ 546 (1133)
...|...+|+ +..|+...+|++|.-||..
T Consensus 351 ~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 351 KSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 3578888998 8899999999999999853
No 191
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.40 E-value=2.3e-11 Score=126.96 Aligned_cols=288 Identities=13% Similarity=0.160 Sum_probs=174.8
Q ss_pred CCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eC-CCCeEE------ecC---CcEEEeeCCCCCCcCcCC
Q 043350 124 TGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CT-DTQLWA------GQE---CGVRFWNLEDSYEPGAGI 192 (1133)
Q Consensus 124 dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~-dg~lla------s~D---g~VrvWdl~~~~~~~~gh 192 (1133)
|+.|.+-..+. ..+......|.-|.+ .|+.|+ +| +..+|+ +.. ..+.||.+...+..-...
T Consensus 39 dNqVhll~~d~-e~s~l~skvf~h~ag-------Evw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~ 110 (370)
T KOG1007|consen 39 DNQVHLLRLDS-EGSELLSKVFFHHAG-------EVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSS 110 (370)
T ss_pred cceeEEEEecC-ccchhhhhhhhcCCc-------ceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccc
Confidence 45566655442 112232445666777 899999 77 666777 111 257899998744331000
Q ss_pred CccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCccccc--ccccCCCCeEEEEE
Q 043350 193 GGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGL--SWQAHRGPVLAMIF 270 (1133)
Q Consensus 193 ~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~--~l~gH~~~V~sl~f 270 (1133)
. -|.. ...-..+.+.|.|+.|.|++..|++-. |..|.+|+++..... ...+. .-.+|+...++-+|
T Consensus 111 t------lE~v-~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~----vaev~ss~s~e~~~~ftsg~W 178 (370)
T KOG1007|consen 111 T------LECV-ASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKI----VAEVLSSESAEMRHSFTSGAW 178 (370)
T ss_pred h------hhHh-hcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcch----heeecccccccccceeccccc
Confidence 0 0000 001112455899999999999988765 889999999863320 01111 11236777888899
Q ss_pred eeC--CcEEEEeCCCcEEEEeCCCCceeeEeCC-CCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEE
Q 043350 271 SSQ--GDLWSGGEGGVIKIWPWESIEKSLSLKP-EEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARV 347 (1133)
Q Consensus 271 sp~--g~L~Sgs~DgtI~iWdl~~~~~~l~~~~-~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~v 347 (1133)
+|. |+.+....|+++..||+++......+.. ++.. +.++. . ......+++++
T Consensus 179 spHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~---------vrdlD---------f-Npnkq~~lvt~------ 233 (370)
T KOG1007|consen 179 SPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQR---------VRDLD---------F-NPNKQHILVTC------ 233 (370)
T ss_pred CCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcce---------eeecc---------C-CCCceEEEEEc------
Confidence 994 5544445689999999997543333321 2222 22222 1 22344567777
Q ss_pred EecCCCceeEeecC-CCceeEEEecCCcceeEEEeCCCC-CccccccceEEEEeeCCCCcccccccccc----ceeecc-
Q 043350 348 WCAQPLSFSLWDAR-SKELLKVFNIEGHIENRVDTQSVQ-DQPVEDEMKVKFVSSNKKEKPHGFLQRSR----NAIMGA- 420 (1133)
Q Consensus 348 wss~d~~I~lWD~~-tg~~l~~~~~h~~~v~~l~~sp~g-~~~~e~e~~v~lasgs~Dg~i~~~~~~~~----~~~~~~- 420 (1133)
+.|+.|++||.| +..+++.+.+|...|.++.|+|.- ++ |++|+.|..|..+..... +...++
T Consensus 234 --gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqL---------iLs~~SDs~V~Lsca~svSSE~qi~~~~d 302 (370)
T KOG1007|consen 234 --GDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQL---------ILSGGSDSAVNLSCASSVSSEQQIEFEDD 302 (370)
T ss_pred --CCCccEEEEeccCCCccccccCCCceEEEEEEecCccceE---------EEecCCCceeEEEeccccccccccccccc
Confidence 899999999999 677899999999999999999954 45 889999988861111100 000000
Q ss_pred ------CCceEEEEEecCCc---ccCCCCCEEEEEECCCC--eEEEEecCCeEEEEeC
Q 043350 421 ------ADAVRRVATRGAGA---FVDDTKRTEAMVLTADG--MIWSGCTNGLLVQWDG 467 (1133)
Q Consensus 421 ------~~~V~~v~~~p~g~---~~~h~~~V~sl~~spdg--~L~sgs~DG~I~vWd~ 467 (1133)
.+...++..-++|. +..|...|.++++|.-. .+++-+.||.+.|=..
T Consensus 303 ese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 303 ESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred cccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 11112222233443 56777788888887655 6777778888776544
No 192
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=1.4e-11 Score=131.55 Aligned_cols=144 Identities=15% Similarity=0.327 Sum_probs=105.4
Q ss_pred CEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE--eC-CCCeEE--ecCCcEEEeeCCCCCCcCc
Q 043350 116 EFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA--CT-DTQLWA--GQECGVRFWNLEDSYEPGA 190 (1133)
Q Consensus 116 ~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~--s~-dg~lla--s~Dg~VrvWdl~~~~~~~~ 190 (1133)
..+|++...|.|+++|..+ ++. +.++++|+. .+..+. +. ..+.+. +.||+||+||++...+.-
T Consensus 41 ~~vav~lSngsv~lyd~~t---g~~-l~~fk~~~~-------~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a- 108 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT---GQL-LEEFKGPPA-------TTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA- 108 (376)
T ss_pred eeEEEEecCCeEEEEeccc---hhh-hheecCCCC-------cccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh-
Confidence 5689999999999999885 666 888999988 555555 22 233333 999999999998632210
Q ss_pred CCCccccCCCCCCCceeeccCC-CCeEEEEEeCCCCEEEEEeC----CCeEEEEeCCCCCCCCCCCccccc-ccccCCCC
Q 043350 191 GIGGRVRRGDEDAAPFYESANT-SPTMCLMVDCGNRLVWTGHK----DGKIRSWKMDQTLDDANNPFKEGL-SWQAHRGP 264 (1133)
Q Consensus 191 gh~~~v~~g~~~~~~~~~~~h~-s~V~~la~spd~~~LaSgs~----Dg~V~vWd~~~~~~~~~~~~~~~~-~l~gH~~~ 264 (1133)
.+.+..+. .|..|++.+-..+++++|.. |-.|.+||++... +.+. -...|.+.
T Consensus 109 --------------~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q-------q~l~~~~eSH~DD 167 (376)
T KOG1188|consen 109 --------------RISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ-------QLLRQLNESHNDD 167 (376)
T ss_pred --------------heeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEecccc-------chhhhhhhhccCc
Confidence 11122222 46778877767788888753 6789999998611 2133 34679999
Q ss_pred eEEEEEeeCCc--EEEEeCCCcEEEEeCCC
Q 043350 265 VLAMIFSSQGD--LWSGGEGGVIKIWPWES 292 (1133)
Q Consensus 265 V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~ 292 (1133)
|++|+|+|... |+|||-||.|.++|+..
T Consensus 168 VT~lrFHP~~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 168 VTQLRFHPSDPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred ceeEEecCCCCCeEEeecccceEEeeecCC
Confidence 99999999877 99999999999999975
No 193
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=3.1e-11 Score=144.18 Aligned_cols=279 Identities=17% Similarity=0.194 Sum_probs=175.3
Q ss_pred CeEEec-CCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC--CCCEEEEEeCCCeEEEEeCCCC
Q 043350 168 QLWAGQ-ECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC--GNRLVWTGHKDGKIRSWKMDQT 244 (1133)
Q Consensus 168 ~llas~-Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp--d~~~LaSgs~Dg~V~vWd~~~~ 244 (1133)
++.++. .-.|+|||.+.....-.-+.+ ......|+.+.+-. |..+|.+|+.||.||||+--..
T Consensus 1078 ~i~~ad~r~~i~vwd~e~~~~l~~F~n~--------------~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1078 QIAAADDRERIRVWDWEKGRLLNGFDNG--------------AFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred eeEEcCCcceEEEEecccCceeccccCC--------------CCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 344444 458999999873221111110 02234577777654 6788999999999999985431
Q ss_pred CCCCCCCcccccccc---cC----CCCeEEEEEeeCC-cEEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEE
Q 043350 245 LDDANNPFKEGLSWQ---AH----RGPVLAMIFSSQG-DLWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFI 316 (1133)
Q Consensus 245 ~~~~~~~~~~~~~l~---gH----~~~V~sl~fsp~g-~L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~ 316 (1133)
.. .+.+.+..|. ++ ++.=.-+.|.... .|+++|.-..|+|||.+..............
T Consensus 1144 ~~---~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t----------- 1209 (1387)
T KOG1517|consen 1144 KW---KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSST----------- 1209 (1387)
T ss_pred cc---CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCc-----------
Confidence 10 1123333222 22 1211334565543 3777787899999999864333222221111
Q ss_pred EccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCC---ceeEEEecCCcc--eeEEEeCCCCCccccc
Q 043350 317 DLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSK---ELLKVFNIEGHI--ENRVDTQSVQDQPVED 391 (1133)
Q Consensus 317 d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg---~~l~~~~~h~~~--v~~l~~sp~g~~~~e~ 391 (1133)
++..+.. ....+.+++.+ ..||.|++||.|.. ..+..+..|... |..+.+.+.|--
T Consensus 1210 ------~vTaLS~-~~~~gn~i~AG--------faDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~---- 1270 (1387)
T KOG1517|consen 1210 ------LVTALSA-DLVHGNIIAAG--------FADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLG---- 1270 (1387)
T ss_pred ------cceeecc-cccCCceEEEe--------ecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCc----
Confidence 1111111 11224455556 78999999999843 457788888877 888888886632
Q ss_pred cceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCCCC
Q 043350 392 EMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGNGN 470 (1133)
Q Consensus 392 e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g~ 470 (1133)
.+++|+.+|.|+.|+.|... ......+... ....+..+++..+++. .+++|+. +.|+||++.|+
T Consensus 1271 ----elvSgs~~G~I~~~DlR~~~-----~e~~~~iv~~-----~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1271 ----ELVSGSQDGDIQLLDLRMSS-----KETFLTIVAH-----WEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred ----ceeeeccCCeEEEEecccCc-----ccccceeeec-----cccCccceeeeeccCCCeeeecCc-ceEEEEecChh
Confidence 18999999999877666321 1111111111 1112247888888888 8888888 99999999997
Q ss_pred eeEEEecC-------CcceeE--EecCCCEEEEEecCCeEEEEeCCC
Q 043350 471 RVSDILHH-------QCAVQC--FCTYGSRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 471 ~l~~~~~h-------~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g 508 (1133)
.+..++.+ .+.+.| |+|.--.||+|+.|.+|.||..+.
T Consensus 1336 ~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1336 QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence 77666543 244566 999999999999999999998764
No 194
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=3.9e-11 Score=134.39 Aligned_cols=128 Identities=19% Similarity=0.282 Sum_probs=106.3
Q ss_pred eeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEE
Q 043350 142 CLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCL 218 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~l 218 (1133)
..+|.||.+ -|.++. +.+|.+|+ |.|-.+.|||.-..... | .+..+|+..|.|+
T Consensus 43 E~eL~GH~G-------CVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll---h-------------sI~TgHtaNIFsv 99 (758)
T KOG1310|consen 43 EAELTGHTG-------CVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL---H-------------SISTGHTANIFSV 99 (758)
T ss_pred hhhhccccc-------eecceeecCCCCEEeecCCcceEEeecchhccee---e-------------eeecccccceeEE
Confidence 357899999 999999 99999999 77889999997642111 2 2556899999999
Q ss_pred EEeC--CCCEEEEEeCCCeEEEEeCCCC--CCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCC
Q 043350 219 MVDC--GNRLVWTGHKDGKIRSWKMDQT--LDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWES 292 (1133)
Q Consensus 219 a~sp--d~~~LaSgs~Dg~V~vWd~~~~--~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~ 292 (1133)
.|-| ++++++||..|..|+++|++.. ...+.........+..|...|..|+-.|++. ++++++||+|+-+|++.
T Consensus 100 KFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 100 KFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred eeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 9999 6789999999999999999742 2233444466778899999999999999995 99999999999999986
No 195
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.36 E-value=3.7e-11 Score=130.96 Aligned_cols=319 Identities=12% Similarity=0.084 Sum_probs=185.9
Q ss_pred cccCCCCC-EEEEecCCCeEEeccCCCCCCCCC-----CeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEE
Q 043350 109 KPFQPMVE-FIGSGGGTGIFKVPSRAAVHPGRP-----PCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRF 179 (1133)
Q Consensus 109 ~~~~p~g~-~lasgs~dg~irlW~~~~~~~g~~-----~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~Vrv 179 (1133)
+.|+.... +||||+.|..||||......++.- -...|..|.. .|+.+. +++|.+|| +.+|.|.+
T Consensus 19 ~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~-------aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 19 VDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTR-------AVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred EEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcc-------eeEEEEEcCCcCeeeecCCCceEEE
Confidence 55677666 999999999999999775544441 1235666777 999999 99999999 77889999
Q ss_pred eeCCCCCCcCcCCCccccCCCCC----CCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccc
Q 043350 180 WNLEDSYEPGAGIGGRVRRGDED----AAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEG 255 (1133)
Q Consensus 180 Wdl~~~~~~~~gh~~~v~~g~~~----~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~ 255 (1133)
|......-. ... ...+.. ..-.+..+|...|+.++|+|++..+++|+-|..+++||+..+ ...
T Consensus 92 Wk~~~~~~~--~~d---~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G--------~l~ 158 (434)
T KOG1009|consen 92 WKQGDVRIF--DAD---TEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG--------QLL 158 (434)
T ss_pred EEecCcCCc--ccc---chhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc--------eeE
Confidence 987641000 000 000000 011245568899999999999999999999999999999862 456
Q ss_pred cccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCC--ceee--------EeCCCCceEEEEeecceEEEccCceee
Q 043350 256 LSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESI--EKSL--------SLKPEEKHMAALLVERSFIDLRAQVTV 324 (1133)
Q Consensus 256 ~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~--~~~l--------~~~~~~~~l~s~~~d~s~~d~~~~~~v 324 (1133)
..+..|...|..++|.|-++ +++=|.|...+...+... ...+ ...+.+.....+..|.+.-.+ .
T Consensus 159 ~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksF-----F 233 (434)
T KOG1009|consen 159 AILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSF-----F 233 (434)
T ss_pred eeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhh-----h
Confidence 67889999999999999999 999999987666665431 1111 111112221222222220000 0
Q ss_pred eccccCCCCCeEEEEecCCceEEEecC-CCceeEeecC-CCceeEEEecCCcceeEEEeCCCC----Ccccccc------
Q 043350 325 NGACSISSTEIKCMLSDHARARVWCAQ-PLSFSLWDAR-SKELLKVFNIEGHIENRVDTQSVQ----DQPVEDE------ 392 (1133)
Q Consensus 325 ~~~~~~~~~~~~~l~S~d~~i~vwss~-d~~I~lWD~~-tg~~l~~~~~h~~~v~~l~~sp~g----~~~~e~e------ 392 (1133)
.. .. ..+++.+++...+..++-... -++..+++-. ..++...++........+.++|-- .. .++.
T Consensus 234 rR-ls-fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~-~~~~~~~~lp 310 (434)
T KOG1009|consen 234 RR-LS-FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPL-SSEKFLFVLP 310 (434)
T ss_pred hh-cc-cCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccc-cccccccccc
Confidence 00 11 246666666655444322211 1223333322 234455566666666677777621 11 0010
Q ss_pred ceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCCCC
Q 043350 393 MKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGNGN 470 (1133)
Q Consensus 393 ~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g~ 470 (1133)
.++.+|.++.+... .++..... +...+ -.-|...|+.++|++|| .|+..+.||...+-..++.
T Consensus 311 yrlvfaiAt~~svy-vydtq~~~-------P~~~v-------~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 311 YRLVFAIATKNSVY-VYDTQTLE-------PLAVV-------DNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred cceEEEEeecceEE-Eecccccc-------ceEEE-------eeeeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 02234444443322 22211110 11111 12345567778888888 7777888887776666443
No 196
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.35 E-value=1.5e-11 Score=139.07 Aligned_cols=164 Identities=15% Similarity=0.245 Sum_probs=125.8
Q ss_pred cccCCCCCEEEE--ecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eC-CCCeEE--ecCCcEEEeeC
Q 043350 109 KPFQPMVEFIGS--GGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CT-DTQLWA--GQECGVRFWNL 182 (1133)
Q Consensus 109 ~~~~p~g~~las--gs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~-dg~lla--s~Dg~VrvWdl 182 (1133)
-.|..+.+++|. +|.-|.|-|+++. .||+.|-..+.+- ..|..|+.+. .| |.+.|| +.||.|++|.+
T Consensus 585 nGfcan~~rvAVPL~g~gG~iai~el~--~PGrLPDgv~p~l-----~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~ 657 (1012)
T KOG1445|consen 585 NGFCANNKRVAVPLAGSGGVIAIYELN--EPGRLPDGVMPGL-----FNGTLVTDLHWDPFDDERLAVATDDGQINLWRL 657 (1012)
T ss_pred CceeeccceEEEEecCCCceEEEEEcC--CCCCCCccccccc-----ccCceeeecccCCCChHHeeecccCceEEEEEe
Confidence 456777777775 4556889999876 4677754444332 2355889998 44 666666 89999999998
Q ss_pred CCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccC
Q 043350 183 EDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAH 261 (1133)
Q Consensus 183 ~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH 261 (1133)
...-.. ..+.....++.+|...|+.+.|+| ....|++++.|.+|++||+.. .+....+.+|
T Consensus 658 ~a~gl~----------e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~--------~~~~~~l~gH 719 (1012)
T KOG1445|consen 658 TANGLP----------ENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN--------AKLYSRLVGH 719 (1012)
T ss_pred ccCCCC----------cccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh--------hhhhheeccC
Confidence 762110 112223457788999999999999 788999999999999999986 2556689999
Q ss_pred CCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceee
Q 043350 262 RGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSL 297 (1133)
Q Consensus 262 ~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l 297 (1133)
++.|.+++|+|+|+ ++|.+.||+|++|..+.....+
T Consensus 720 tdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv 756 (1012)
T KOG1445|consen 720 TDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPV 756 (1012)
T ss_pred cCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcc
Confidence 99999999999999 9999999999999988754443
No 197
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.30 E-value=8.6e-11 Score=131.33 Aligned_cols=202 Identities=14% Similarity=0.164 Sum_probs=146.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCC
Q 043350 223 GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKP 301 (1133)
Q Consensus 223 d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~ 301 (1133)
....++.++.||.+.|-+-.+ +.-....+|.+.|.+-.|+|+|. |+|+++||.|++|.-....+
T Consensus 74 ~~d~~~i~s~DGkf~il~k~~---------rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLR------ 138 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILNKSA---------RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLR------ 138 (737)
T ss_pred CcceEEEEcCCceEEEecccc---------hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHH------
Confidence 456789999999999998776 55557889999999999999999 99999999999997543211
Q ss_pred CCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEe
Q 043350 302 EEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDT 381 (1133)
Q Consensus 302 ~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~ 381 (1133)
.++......|.|++|
T Consensus 139 -----------------------------------------------------------------Stl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 139 -----------------------------------------------------------------STVVQNEESIRCARW 153 (737)
T ss_pred -----------------------------------------------------------------HHHhhcCceeEEEEE
Confidence 112223456778888
Q ss_pred CCCCCccccccceEEEE-eeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecC
Q 043350 382 QSVQDQPVEDEMKVKFV-SSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTN 459 (1133)
Q Consensus 382 sp~g~~~~e~e~~v~la-sgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~D 459 (1133)
.|+..- ++ +.+..-.|+.+ +..+.-+.+ ..|.+-|.++.+++.. .+++|++|
T Consensus 154 ~p~S~~---------vl~c~g~h~~IKpL-----------~~n~k~i~W------kAHDGiiL~~~W~~~s~lI~sgGED 207 (737)
T KOG1524|consen 154 APNSNS---------IVFCQGGHISIKPL-----------AANSKIIRW------RAHDGLVLSLSWSTQSNIIASGGED 207 (737)
T ss_pred CCCCCc---------eEEecCCeEEEeec-----------ccccceeEE------eccCcEEEEeecCccccceeecCCc
Confidence 887765 33 33332222211 111222333 3778888888888888 99999999
Q ss_pred CeEEEEeCCCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCCCcceeeeccccCeEEeeec--ccceeeec
Q 043350 460 GLLVQWDGNGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGNLTASWIAHSSPVLKLAVG--VDHIYSLA 535 (1133)
Q Consensus 460 G~I~vWd~~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~~l~~~~~H~~~V~~l~fs--~~~L~S~s 535 (1133)
-..++||..|..+..-..|..+|++ |.|+ +..+.||. .++++ -+...+.|..++|+ |..++.+.
T Consensus 208 ~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~----------~~p~~GSifnlsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 208 FRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF----------SSPRVGSIFNLSWSADGTQATCGT 275 (737)
T ss_pred eeEEeecccCcccccCChhccceeeeeeccc-cceeeeee-eeeee----------cCCCccceEEEEEcCCCceeeccc
Confidence 9999999999999988899999999 8888 55566654 34441 12345788999999 77777777
Q ss_pred ccCCeee
Q 043350 536 AHGGIRG 542 (1133)
Q Consensus 536 ~Dg~I~l 542 (1133)
..|.+.+
T Consensus 276 ~~G~v~~ 282 (737)
T KOG1524|consen 276 STGQLIV 282 (737)
T ss_pred cCceEEE
Confidence 7776654
No 198
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=1.9e-09 Score=128.21 Aligned_cols=382 Identities=16% Similarity=0.136 Sum_probs=230.1
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-e--CCC--CeEE-ecCCcEEEeeC
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-C--TDT--QLWA-GQECGVRFWNL 182 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s--~dg--~lla-s~Dg~VrvWdl 182 (1133)
..|++|+.++..... ..|.|+...+ +.. +..|..|.. ++..+. . +.. .++. +.||.|++||.
T Consensus 22 avfSnD~k~l~~~~~-~~V~VyS~~T---g~~-i~~l~~~~a-------~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~ 89 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCTG-NFVKVYSTAT---GEC-ITSLEDHTA-------PLTSVIVLPSSENANYLIVCSLDGTIRVWDW 89 (792)
T ss_pred cccccCCcEEEEeeC-CEEEEEecch---Hhh-hhhcccccC-------ccceeeecCCCccceEEEEEecCccEEEecC
Confidence 568999999886654 6789998774 555 778999988 888777 3 332 2333 99999999999
Q ss_pred CC--CCCcC----cCCCcccc-----------CCCCCCCcee-------------------------eccCCCCeEEEEE
Q 043350 183 ED--SYEPG----AGIGGRVR-----------RGDEDAAPFY-------------------------ESANTSPTMCLMV 220 (1133)
Q Consensus 183 ~~--~~~~~----~gh~~~v~-----------~g~~~~~~~~-------------------------~~~h~s~V~~la~ 220 (1133)
.+ +.+++ .-|..+.. .+.++...+. ...|.. -.++.+
T Consensus 90 ~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~ 168 (792)
T KOG1963|consen 90 SDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVD 168 (792)
T ss_pred CCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEE
Confidence 86 22221 11111100 0001100000 000111 256667
Q ss_pred eCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCC------C
Q 043350 221 DCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWES------I 293 (1133)
Q Consensus 221 spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~------~ 293 (1133)
++.+...+... +..+.+|....... .......-..|.-.+++.+++|.++ +++|..||.|.+|.--. .
T Consensus 169 ~~~ge~~~i~~-~~~~~~~~v~~~~~----~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t 243 (792)
T KOG1963|consen 169 NNSGEFKGIVH-MCKIHIYFVPKHTK----HTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSET 243 (792)
T ss_pred cCCceEEEEEE-eeeEEEEEecccce----eeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccccc
Confidence 77666655554 45688888765111 0011112245777799999999999 99999999999996432 2
Q ss_pred ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCC
Q 043350 294 EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEG 373 (1133)
Q Consensus 294 ~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~ 373 (1133)
...+.+|.++.. ... .+.++.++.|+ +..+.+.+|.+.+++ .+-++--+
T Consensus 244 ~t~lHWH~~~V~---------~L~-------------fS~~G~~LlSG--------G~E~VLv~Wq~~T~~-kqfLPRLg 292 (792)
T KOG1963|consen 244 CTLLHWHHDEVN---------SLS-------------FSSDGAYLLSG--------GREGVLVLWQLETGK-KQFLPRLG 292 (792)
T ss_pred ceEEEecccccc---------eeE-------------EecCCceEeec--------ccceEEEEEeecCCC-cccccccC
Confidence 344445544443 111 23556677777 888999999999888 45556667
Q ss_pred cceeEEEeCCCCCccccccceEEEEeeCCCCccccc---cc---cccceeec--------cCCceEEEEEec--------
Q 043350 374 HIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGF---LQ---RSRNAIMG--------AADAVRRVATRG-------- 431 (1133)
Q Consensus 374 ~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~---~~---~~~~~~~~--------~~~~V~~v~~~p-------- 431 (1133)
.+|..+.+|||+.. .+....|+.|+.. +. ..+..+.. ..+-...+++.|
T Consensus 293 s~I~~i~vS~ds~~---------~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln 363 (792)
T KOG1963|consen 293 SPILHIVVSPDSDL---------YSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLN 363 (792)
T ss_pred CeeEEEEEcCCCCe---------EEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeec
Confidence 88999999999987 5555666665511 00 00000000 011112222222
Q ss_pred -------------CCc-----------cc---CCCCCEEEEEECCCC-eEEEEe--------cCC--eEEEEeCCCC---
Q 043350 432 -------------AGA-----------FV---DDTKRTEAMVLTADG-MIWSGC--------TNG--LLVQWDGNGN--- 470 (1133)
Q Consensus 432 -------------~g~-----------~~---~h~~~V~sl~~spdg-~L~sgs--------~DG--~I~vWd~~g~--- 470 (1133)
+.. .. .+...+.+++.+..| +++|+- .|| .+++|-.+++
T Consensus 364 ~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt 443 (792)
T KOG1963|consen 364 GHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKT 443 (792)
T ss_pred CCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcce
Confidence 111 00 223346777777778 777753 233 4788977442
Q ss_pred -ee-EEE-ecCCccee--EEe-cCCC-EEEEEecCCeEEEEeCCC--C---------cceeeeccccCeEEeeec-ccce
Q 043350 471 -RV-SDI-LHHQCAVQ--CFC-TYGS-RMYVGYVSGYLQILDLDG--N---------LTASWIAHSSPVLKLAVG-VDHI 531 (1133)
Q Consensus 471 -~l-~~~-~~h~~~V~--~fs-~dg~-~Lasgs~DG~I~vwd~~g--~---------~l~~~~~H~~~V~~l~fs-~~~L 531 (1133)
.+ ..+ ..|...+. |+. +... ..++++.||.++||-+.+ + +...-..|..++++++|+ ...+
T Consensus 444 ~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGsl 523 (792)
T KOG1963|consen 444 FILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSL 523 (792)
T ss_pred eEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcE
Confidence 22 222 23655443 433 3333 899999999999998743 1 111111378899999999 6789
Q ss_pred eeecccCCeeeccccCC
Q 043350 532 YSLAAHGGIRGWTFTSP 548 (1133)
Q Consensus 532 ~S~s~Dg~I~lW~l~s~ 548 (1133)
+++|.|++|.+||..++
T Consensus 524 la~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 524 LAVSFDDTITIWDYDTK 540 (792)
T ss_pred EEEecCCEEEEecCCCh
Confidence 99999999999998774
No 199
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.29 E-value=1.6e-10 Score=122.75 Aligned_cols=241 Identities=11% Similarity=0.106 Sum_probs=175.7
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeC
Q 043350 212 TSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPW 290 (1133)
Q Consensus 212 ~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl 290 (1133)
..||+|.+|++|...+|.+-....|.|+...+ ...++..+++..|...|++|+|+|..+ |+||+.|..-.+|..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~-----~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLG-----ADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecC-----CCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 46999999999999999999999999999987 445688899999999999999999998 999999999999976
Q ss_pred CCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEe
Q 043350 291 ESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFN 370 (1133)
Q Consensus 291 ~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~ 370 (1133)
.. ++. -++.-.+.
T Consensus 85 ~~---------~~~----------------------------------------------------------WkptlvLl 97 (361)
T KOG1523|consen 85 PS---------GGT----------------------------------------------------------WKPTLVLL 97 (361)
T ss_pred CC---------CCe----------------------------------------------------------eccceeEE
Confidence 21 111 12223334
Q ss_pred cCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCC
Q 043350 371 IEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTAD 450 (1133)
Q Consensus 371 ~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spd 450 (1133)
.+....+++.|+|.... ||+||....|-.+. +....+ |=+.-+ .-..+...|.++.++|+
T Consensus 98 RiNrAAt~V~WsP~enk---------FAVgSgar~isVcy------~E~ENd--WWVsKh---ikkPirStv~sldWhpn 157 (361)
T KOG1523|consen 98 RINRAATCVKWSPKENK---------FAVGSGARLISVCY------YEQEND--WWVSKH---IKKPIRSTVTSLDWHPN 157 (361)
T ss_pred EeccceeeEeecCcCce---------EEeccCccEEEEEE------Eecccc--eehhhh---hCCccccceeeeeccCC
Confidence 45667889999999998 99999988774111 111110 000000 01234556888999999
Q ss_pred C-eEEEEecCCeEEEEeC--CC-----------------CeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCC
Q 043350 451 G-MIWSGCTNGLLVQWDG--NG-----------------NRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 451 g-~L~sgs~DG~I~vWd~--~g-----------------~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g 508 (1133)
+ +|++|+.|+..++++. .+ +++.++....+.|.. |+|+|..|+=.+.|.+|.+-|..+
T Consensus 158 nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 158 NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence 9 9999999999999964 21 122333345566766 999999999999999999999876
Q ss_pred C--cceeeeccccCeEEeeec-ccceeeecccCCeeecc
Q 043350 509 N--LTASWIAHSSPVLKLAVG-VDHIYSLAAHGGIRGWT 544 (1133)
Q Consensus 509 ~--~l~~~~~H~~~V~~l~fs-~~~L~S~s~Dg~I~lW~ 544 (1133)
. .......-.-|-.++.|- ...++.++.|..-.++.
T Consensus 238 p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf~ 276 (361)
T KOG1523|consen 238 PSERVQSVATAQLPLLSVSWISENSVVAAGYDCGPVLFV 276 (361)
T ss_pred CchhccchhhccCCceeeEeecCCceeecCCCCCceEEE
Confidence 3 233443333777888877 77788888876555444
No 200
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.27 E-value=3.2e-10 Score=120.38 Aligned_cols=217 Identities=12% Similarity=0.036 Sum_probs=153.1
Q ss_pred eEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCC
Q 043350 158 FLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDG 234 (1133)
Q Consensus 158 ~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg 234 (1133)
+|++.+ ++|++.+| .....|.|+...+...-..+| +++.|...|+++.|+|..+.|++|+.|.
T Consensus 12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~h--------------tls~Hd~~vtgvdWap~snrIvtcs~dr 77 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAH--------------TLSEHDKIVTGVDWAPKSNRIVTCSHDR 77 (361)
T ss_pred ceeeeeecCCCceEEeccCCceEEEEEecCCCCceece--------------ehhhhCcceeEEeecCCCCceeEccCCC
Confidence 899999 89999999 445589999887632111233 3677889999999999999999999999
Q ss_pred eEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecc
Q 043350 235 KIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVER 313 (1133)
Q Consensus 235 ~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~ 313 (1133)
.-.||.... ...+++...+..|...+++|.|+|.++ +++||....|.||-++. +..+
T Consensus 78 nayVw~~~~-----~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~---------ENdW-------- 135 (361)
T KOG1523|consen 78 NAYVWTQPS-----GGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQ---------ENDW-------- 135 (361)
T ss_pred CccccccCC-----CCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEec---------ccce--------
Confidence 999999853 233578888899999999999999999 99999999999997653 1111
Q ss_pred eEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccc
Q 043350 314 SFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEM 393 (1133)
Q Consensus 314 s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~ 393 (1133)
|- +. ..++ .+...|++++|+|++-+
T Consensus 136 --WV----------------------sK-------------------hikk------PirStv~sldWhpnnVL------ 160 (361)
T KOG1523|consen 136 --WV----------------------SK-------------------HIKK------PIRSTVTSLDWHPNNVL------ 160 (361)
T ss_pred --eh----------------------hh-------------------hhCC------ccccceeeeeccCCcce------
Confidence 00 00 0111 23456889999999988
Q ss_pred eEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCc----ccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCC
Q 043350 394 KVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGA----FVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGN 468 (1133)
Q Consensus 394 ~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~----~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~ 468 (1133)
+++||.|++.+.|..-....-.......+.-. .|-|+ +....+.+..+.|+|.| .|+-.+.|+++.+=|..
T Consensus 161 ---laaGs~D~k~rVfSayIK~Vdekpap~pWgsk-~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 161 ---LAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSK-MPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred ---ecccccCcceeEEEEeeeccccCCCCCCCccC-CcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecC
Confidence 99999999886322110000000000111000 00111 23456789999999999 99999999999999986
Q ss_pred C
Q 043350 469 G 469 (1133)
Q Consensus 469 g 469 (1133)
+
T Consensus 237 ~ 237 (361)
T KOG1523|consen 237 G 237 (361)
T ss_pred C
Confidence 6
No 201
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=8.8e-11 Score=123.93 Aligned_cols=252 Identities=15% Similarity=0.208 Sum_probs=163.0
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCC
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDS 185 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~ 185 (1133)
..|++-|.+||.|+.||.+.|||+.+..+ ...+.+|.. +|.+++ |++|+.|. |.|..|++||+...
T Consensus 29 ~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i----ar~lsaH~~-------pi~sl~WS~dgr~LltsS~D~si~lwDl~~g 97 (405)
T KOG1273|consen 29 CQFSRWGDYLAVGCANGRVVIYDFDTFRI----ARMLSAHVR-------PITSLCWSRDGRKLLTSSRDWSIKLWDLLKG 97 (405)
T ss_pred EEeccCcceeeeeccCCcEEEEEccccch----hhhhhcccc-------ceeEEEecCCCCEeeeecCCceeEEEeccCC
Confidence 67999999999999999999999985333 556899999 999999 99998888 89999999998762
Q ss_pred C--CcC---------cCCCcc----ccCCCCCCCceeeccC---------------CCCeEEEEEeCCCCEEEEEeCCCe
Q 043350 186 Y--EPG---------AGIGGR----VRRGDEDAAPFYESAN---------------TSPTMCLMVDCGNRLVWTGHKDGK 235 (1133)
Q Consensus 186 ~--~~~---------~gh~~~----v~~g~~~~~~~~~~~h---------------~s~V~~la~spd~~~LaSgs~Dg~ 235 (1133)
. ... .-|..+ |..--+. +|.+.... .....|..|++.|+++++|..-|.
T Consensus 98 s~l~rirf~spv~~~q~hp~k~n~~va~~~~~-sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk 176 (405)
T KOG1273|consen 98 SPLKRIRFDSPVWGAQWHPRKRNKCVATIMEE-SPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK 176 (405)
T ss_pred CceeEEEccCccceeeeccccCCeEEEEEecC-CcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcce
Confidence 1 110 001100 0000000 11111110 111234457788999999999999
Q ss_pred EEEEeCCCCCCCCCCCcccccccccCC-CCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCce---eeEeCCCCceEEEEe
Q 043350 236 IRSWKMDQTLDDANNPFKEGLSWQAHR-GPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEK---SLSLKPEEKHMAALL 310 (1133)
Q Consensus 236 V~vWd~~~~~~~~~~~~~~~~~l~gH~-~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~---~l~~~~~~~~l~s~~ 310 (1133)
+.+++..+. +.+..++--. ..|..+.|+..|+ |+.-+.|.+||.+++..... .....+..+
T Consensus 177 llv~~a~t~--------e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K------ 242 (405)
T KOG1273|consen 177 LLVYDAETL--------ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHK------ 242 (405)
T ss_pred EEEEecchh--------eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHH------
Confidence 999999872 3344444433 7899999999999 99999999999999874211 111111110
Q ss_pred ecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCC-cceeEEEeCCCCCccc
Q 043350 311 VERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEG-HIENRVDTQSVQDQPV 389 (1133)
Q Consensus 311 ~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~-~~v~~l~~sp~g~~~~ 389 (1133)
+-|+-+...-..+| .++++.+++.+ +..-..+.||....|.+++.+.+.. .....+.|+|-...
T Consensus 243 ----~qDvVNk~~Wk~cc--fs~dgeYv~a~-------s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~-- 307 (405)
T KOG1273|consen 243 ----LQDVVNKLQWKKCC--FSGDGEYVCAG-------SARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPI-- 307 (405)
T ss_pred ----HHHHHhhhhhhhee--ecCCccEEEec-------cccceeEEEEecCCcceeeeecCCchhheeecccccceee--
Confidence 01110000011111 22344444433 1345678999999999999999877 44668899988776
Q ss_pred cccceEEEEeeCCCCccccc
Q 043350 390 EDEMKVKFVSSNKKEKPHGF 409 (1133)
Q Consensus 390 e~e~~v~lasgs~Dg~i~~~ 409 (1133)
+++- ..|.++.|
T Consensus 308 -------i~si-~sg~v~iw 319 (405)
T KOG1273|consen 308 -------IASI-ASGVVYIW 319 (405)
T ss_pred -------eeec-cCCceEEE
Confidence 6555 56666543
No 202
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.24 E-value=2.8e-10 Score=120.72 Aligned_cols=339 Identities=12% Similarity=0.105 Sum_probs=201.3
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCcc-ccccceEEEEE-eCCCCeEE---ecCCcEEEeeCC
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKE-TQAGRFLRNIA-CTDTQLWA---GQECGVRFWNLE 183 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~-~~~g~~V~~v~-s~dg~lla---s~Dg~VrvWdl~ 183 (1133)
-.|+|+|+++|+.+.- .+.|-|.. +++-|.... .+ .|.-|. ..|.-++. ..|+.|.+|++.
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~----------tlq~~qlf~cld---ki~yieW~ads~~ilC~~yk~~~vqvwsl~ 79 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSE----------TLQLHQLFLCLD---KIVYIEWKADSCHILCVAYKDPKVQVWSLV 79 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccc----------hhhHHHHHHHHH---HhhheeeeccceeeeeeeeccceEEEEEee
Confidence 5689999999999886 33444444 233332200 00 233344 45554444 779999999987
Q ss_pred CCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCC
Q 043350 184 DSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGN-RLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHR 262 (1133)
Q Consensus 184 ~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~-~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~ 262 (1133)
...-.. .......++..+.|+|+| .+|.+...|-.|.||.+.+ +....+.--.
T Consensus 80 Qpew~c-----------------kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t---------~~~~~~~~pK 133 (447)
T KOG4497|consen 80 QPEWYC-----------------KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNT---------QKGYLLPHPK 133 (447)
T ss_pred cceeEE-----------------EeccCCCcceeeeECCCcceEeeeecceeEEEEEEecc---------ceeEEecccc
Confidence 631110 011223478899999999 5667777899999999987 3333333335
Q ss_pred CCeEEEEEeeCCc-EEEEeCC-Cc--EE-----EEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCC
Q 043350 263 GPVLAMIFSSQGD-LWSGGEG-GV--IK-----IWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISST 333 (1133)
Q Consensus 263 ~~V~sl~fsp~g~-L~Sgs~D-gt--I~-----iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~ 333 (1133)
..+..++|+|+|+ .+-++.- .. +. -|-+ .+.+.. .
T Consensus 134 ~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~l---l~~f~~-------------------d-------------- 177 (447)
T KOG4497|consen 134 TNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWIL---LKEFKL-------------------D-------------- 177 (447)
T ss_pred cCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHH---HHhcCC-------------------C--------------
Confidence 6679999999999 5555432 11 00 0110 000000 0
Q ss_pred CeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccc-----c
Q 043350 334 EIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPH-----G 408 (1133)
Q Consensus 334 ~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~-----~ 408 (1133)
+-|-+..-|+-.+..+.+||..-.-.+-.+. .+-.+..++++|.+++ ++.|+.|+.++ .
T Consensus 178 ------T~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qf---------lavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 178 ------TIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQF---------LAVGSYDQMLRVLNHFT 241 (447)
T ss_pred ------cccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccce---------EEeeccchhhhhhceee
Confidence 0011222344555666777754222222221 2345778999999999 99999999887 1
Q ss_pred cc--ccc-----c-----ceee-ccCC----ceEEEEEecCCc-----------------------------ccCCCCCE
Q 043350 409 FL--QRS-----R-----NAIM-GAAD----AVRRVATRGAGA-----------------------------FVDDTKRT 442 (1133)
Q Consensus 409 ~~--~~~-----~-----~~~~-~~~~----~V~~v~~~p~g~-----------------------------~~~h~~~V 442 (1133)
|. ++- . ..+. .... ...++.|.|... +......+
T Consensus 242 Wk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~ 321 (447)
T KOG4497|consen 242 WKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGA 321 (447)
T ss_pred eeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccc
Confidence 11 110 0 0000 0000 011222222110 23334568
Q ss_pred EEEEECCCC-eEEEEecC--CeEEEEeCCCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCCCcceeeecc
Q 043350 443 EAMVLTADG-MIWSGCTN--GLLVQWDGNGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGNLTASWIAH 517 (1133)
Q Consensus 443 ~sl~~spdg-~L~sgs~D--G~I~vWd~~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~~l~~~~~H 517 (1133)
.-++|++|. +++|-... ..+-+||++...+..+.....+|.. +.|....|+.+.....+++|...|-......+.
T Consensus 322 g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~ 401 (447)
T KOG4497|consen 322 GKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKK 401 (447)
T ss_pred ceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCC
Confidence 889999999 66655432 4689999977666666666677887 788778888888888899999988433223333
Q ss_pred ccCeEEeeec--ccceeeecccCC
Q 043350 518 SSPVLKLAVG--VDHIYSLAAHGG 539 (1133)
Q Consensus 518 ~~~V~~l~fs--~~~L~S~s~Dg~ 539 (1133)
.-.|..+.|. |..++-++.|.-
T Consensus 402 GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 402 GFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred CceeeeEEecCCCcEEEEEcCCce
Confidence 4578899998 888988888864
No 203
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.23 E-value=2.4e-09 Score=123.50 Aligned_cols=273 Identities=11% Similarity=0.140 Sum_probs=157.2
Q ss_pred eEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCC
Q 043350 169 LWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGH-KDGKIRSWKMDQTLD 246 (1133)
Q Consensus 169 lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs-~Dg~V~vWd~~~~~~ 246 (1133)
+++ +.++.|.+|++... ..+.. .... .+.+....++++|++++|++++ .++.|.+|+++...
T Consensus 5 y~~~~~~~~I~~~~~~~~-g~l~~-------------~~~~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g- 68 (330)
T PRK11028 5 YIASPESQQIHVWNLNHE-GALTL-------------LQVV-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG- 68 (330)
T ss_pred EEEcCCCCCEEEEEECCC-Cceee-------------eeEE-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC-
Confidence 344 77899999999631 11100 0011 1224567889999999987664 57899999987311
Q ss_pred CCCCCcccccccccCCCCeEEEEEeeCCc-EEEEe-CCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceee
Q 043350 247 DANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGG-EGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTV 324 (1133)
Q Consensus 247 ~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs-~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v 324 (1133)
.+...... ...+....|+|+|+|+ |++++ .++.|.+|+++.. +..
T Consensus 69 ----~l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~---------g~~------------------- 115 (330)
T PRK11028 69 ----ALTFAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD---------GIP------------------- 115 (330)
T ss_pred ----ceEEeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC---------CCC-------------------
Confidence 11111111 1233467899999999 77666 4888999987421 000
Q ss_pred eccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEE-EeeCCC
Q 043350 325 NGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKF-VSSNKK 403 (1133)
Q Consensus 325 ~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~l-asgs~D 403 (1133)
.+.+..+.+ ......++++|++++ + ++...+
T Consensus 116 --------------------------------------~~~~~~~~~-~~~~~~~~~~p~g~~---------l~v~~~~~ 147 (330)
T PRK11028 116 --------------------------------------VAPIQIIEG-LEGCHSANIDPDNRT---------LWVPCLKE 147 (330)
T ss_pred --------------------------------------CCceeeccC-CCcccEeEeCCCCCE---------EEEeeCCC
Confidence 000011111 122446778888877 5 455556
Q ss_pred CccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEec-CCeEEEEeCC---C--CeeEEEe
Q 043350 404 EKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCT-NGLLVQWDGN---G--NRVSDIL 476 (1133)
Q Consensus 404 g~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~-DG~I~vWd~~---g--~~l~~~~ 476 (1133)
++|..|+......+...... .+... .......++|+|+| +++++.. +++|.+|+++ + ..++++.
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~--~~~~~-------~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~ 218 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPA--EVTTV-------EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD 218 (330)
T ss_pred CEEEEEEECCCCcccccCCC--ceecC-------CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe
Confidence 76653332211111100000 00000 11224568899999 7777766 9999999984 2 2233333
Q ss_pred cCCc------ce--eEEecCCCEEEEEe-cCCeEEEEeCCCC-cceeeeccc---cCeEEeeec--ccceeeecc-cCCe
Q 043350 477 HHQC------AV--QCFCTYGSRMYVGY-VSGYLQILDLDGN-LTASWIAHS---SPVLKLAVG--VDHIYSLAA-HGGI 540 (1133)
Q Consensus 477 ~h~~------~V--~~fs~dg~~Lasgs-~DG~I~vwd~~g~-~l~~~~~H~---~~V~~l~fs--~~~L~S~s~-Dg~I 540 (1133)
.... .. ..++|+|++|+++. .++.|.+|+++.. ...++.+|. .....+.++ +++|+++.. +++|
T Consensus 219 ~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v 298 (330)
T PRK11028 219 MMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHI 298 (330)
T ss_pred cCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcE
Confidence 2211 11 22899999999986 4789999998531 122333332 234567887 888887665 8999
Q ss_pred eeccccC
Q 043350 541 RGWTFTS 547 (1133)
Q Consensus 541 ~lW~l~s 547 (1133)
.+|++..
T Consensus 299 ~v~~~~~ 305 (330)
T PRK11028 299 SVYEIDG 305 (330)
T ss_pred EEEEEcC
Confidence 9998764
No 204
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.23 E-value=5.3e-10 Score=121.41 Aligned_cols=153 Identities=14% Similarity=0.179 Sum_probs=111.9
Q ss_pred CCCCEEEE---ecCCCeEEeccCCCCCCCCCC--eeeeccCCCccccccceEEEEE-eC-CCCeEE--ecCCcEEEeeCC
Q 043350 113 PMVEFIGS---GGGTGIFKVPSRAAVHPGRPP--CLELRPHPLKETQAGRFLRNIA-CT-DTQLWA--GQECGVRFWNLE 183 (1133)
Q Consensus 113 p~g~~las---gs~dg~irlW~~~~~~~g~~~--~~~l~~H~~~~~~~g~~V~~v~-s~-dg~lla--s~Dg~VrvWdl~ 183 (1133)
-++.|||. +++.|.+-+-..... |+.+ .-.+.+|.+ +|..+. +| +.+.+| |.|.+|.||.+.
T Consensus 42 vNPkfiAvi~easgGgaf~ViPl~k~--Gr~d~~~P~v~GHt~-------~vLDi~w~PfnD~vIASgSeD~~v~vW~IP 112 (472)
T KOG0303|consen 42 VNPKFVAVIIEASGGGAFLVIPLVKT--GRMDASYPLVCGHTA-------PVLDIDWCPFNDCVIASGSEDTKVMVWQIP 112 (472)
T ss_pred cCCceEEEEEecCCCcceeecccccc--cccCCCCCCccCccc-------cccccccCccCCceeecCCCCceEEEEECC
Confidence 35566664 344444444333211 2110 235789999 999999 77 677788 889999999997
Q ss_pred CCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCC
Q 043350 184 DSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHR 262 (1133)
Q Consensus 184 ~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~ 262 (1133)
.......-.+ ....+.+|...|--++|+| ..+.|+|++.|.+|.+|++.+++ .+.++. |.
T Consensus 113 e~~l~~~lte----------pvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge--------ali~l~-hp 173 (472)
T KOG0303|consen 113 ENGLTRDLTE----------PVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE--------ALITLD-HP 173 (472)
T ss_pred CcccccCccc----------ceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCc--------eeeecC-CC
Confidence 7332221111 1234568989999999999 67889999999999999999732 244455 99
Q ss_pred CCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCC
Q 043350 263 GPVLAMIFSSQGD-LWSGGEGGVIKIWPWESI 293 (1133)
Q Consensus 263 ~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~ 293 (1133)
+-|+++.|+-+|. |+|.+.|..|||||.+++
T Consensus 174 d~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~ 205 (472)
T KOG0303|consen 174 DMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG 205 (472)
T ss_pred CeEEEEEeccCCceeeeecccceeEEEcCCCC
Confidence 9999999999999 999999999999999874
No 205
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.21 E-value=1.3e-09 Score=122.02 Aligned_cols=175 Identities=13% Similarity=0.091 Sum_probs=132.7
Q ss_pred CCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE-ecCC
Q 043350 98 GPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA-GQEC 175 (1133)
Q Consensus 98 ~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla-s~Dg 175 (1133)
.|++...+ ...+|||.-|+|+|.||.|++|.+. |.. ..++.... .+|+|++ .|+..-++ +..+
T Consensus 102 AH~~A~~~---gRW~~dGtgLlt~GEDG~iKiWSrs----GML-RStl~Q~~-------~~v~c~~W~p~S~~vl~c~g~ 166 (737)
T KOG1524|consen 102 AHAAAISS---GRWSPDGAGLLTAGEDGVIKIWSRS----GML-RSTVVQNE-------ESIRCARWAPNSNSIVFCQGG 166 (737)
T ss_pred hhhhhhhh---cccCCCCceeeeecCCceEEEEecc----chH-HHHHhhcC-------ceeEEEEECCCCCceEEecCC
Confidence 56666555 6679999999999999999999987 544 33333333 3899999 77766666 7777
Q ss_pred cEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccc
Q 043350 176 GVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEG 255 (1133)
Q Consensus 176 ~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~ 255 (1133)
.+.|=.+... +++..+..|.+-|.|+.|++.++++++|+.|-..+|||..+ ..+
T Consensus 167 h~~IKpL~~n-----------------~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G---------~~L 220 (737)
T KOG1524|consen 167 HISIKPLAAN-----------------SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG---------ANL 220 (737)
T ss_pred eEEEeecccc-----------------cceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC---------ccc
Confidence 7777544432 22556788999999999999999999999999999999988 667
Q ss_pred cccccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCCC-CceeeEeCCCCceEEEEeecce
Q 043350 256 LSWQAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWES-IEKSLSLKPEEKHMAALLVERS 314 (1133)
Q Consensus 256 ~~l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~~-~~~~l~~~~~~~~l~s~~~d~s 314 (1133)
..-..|.-+|++++|.|+..++.+|. .++|+=..+. .+-.+++++++..++.+...+.
T Consensus 221 f~S~~~ey~ITSva~npd~~~~v~S~-nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~ 279 (737)
T KOG1524|consen 221 FTSAAEEYAITSVAFNPEKDYLLWSY-NTARFSSPRVGSIFNLSWSADGTQATCGTSTGQ 279 (737)
T ss_pred ccCChhccceeeeeeccccceeeeee-eeeeecCCCccceEEEEEcCCCceeeccccCce
Confidence 77788999999999999933665554 5667544444 3567788888887766655444
No 206
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=6.6e-10 Score=132.56 Aligned_cols=231 Identities=14% Similarity=0.111 Sum_probs=143.6
Q ss_pred CCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCC---CeEEEEeCCCCCCCCCC
Q 043350 174 ECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKD---GKIRSWKMDQTLDDANN 250 (1133)
Q Consensus 174 Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~D---g~V~vWd~~~~~~~~~~ 250 (1133)
+..|.+||.++... .....|..++.+.+|+|+|+.|+.++.+ ..|++||+.++..
T Consensus 183 ~~~i~i~d~dg~~~------------------~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~---- 240 (429)
T PRK01742 183 PYEVRVADYDGFNQ------------------FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR---- 240 (429)
T ss_pred eEEEEEECCCCCCc------------------eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce----
Confidence 46899999876321 1223455678999999999999888754 4799999976222
Q ss_pred CcccccccccCCCCeEEEEEeeCCc-EEEE-eCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccc
Q 043350 251 PFKEGLSWQAHRGPVLAMIFSSQGD-LWSG-GEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGAC 328 (1133)
Q Consensus 251 ~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sg-s~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~ 328 (1133)
+.+..+.+|. .+++|+|+|+ |+.+ +.+|.+.||.++
T Consensus 241 --~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d------------------------------------- 278 (429)
T PRK01742 241 --KVVASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMG------------------------------------- 278 (429)
T ss_pred --EEEecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEEE-------------------------------------
Confidence 2333444443 4689999999 7665 467777666432
Q ss_pred cCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeC-CCCccc
Q 043350 329 SISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSN-KKEKPH 407 (1133)
Q Consensus 329 ~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs-~Dg~i~ 407 (1133)
+.+++ +..+..+...+..+.|+|+++. |+..+ .++..+
T Consensus 279 -------------------------------~~~~~-~~~lt~~~~~~~~~~wSpDG~~---------i~f~s~~~g~~~ 317 (429)
T PRK01742 279 -------------------------------ANGGT-PSQLTSGAGNNTEPSWSPDGQS---------ILFTSDRSGSPQ 317 (429)
T ss_pred -------------------------------CCCCC-eEeeccCCCCcCCEEECCCCCE---------EEEEECCCCCce
Confidence 11111 1222333344667899999987 65444 455543
Q ss_pred cccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCC-CCeeEEEecCCcceeEE
Q 043350 408 GFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGN-GNRVSDILHHQCAVQCF 485 (1133)
Q Consensus 408 ~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~-g~~l~~~~~h~~~V~~f 485 (1133)
.|... .....+..+ . +.. ....++||| .|+.++.++ +.+||+. +........+...-.+|
T Consensus 318 I~~~~------~~~~~~~~l--~-------~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~ 379 (429)
T PRK01742 318 VYRMS------ASGGGASLV--G-------GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSI 379 (429)
T ss_pred EEEEE------CCCCCeEEe--c-------CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceE
Confidence 22211 001111111 1 111 245689999 887777766 4558984 44332222222222239
Q ss_pred ecCCCEEEEEecCCeEEEEe---CCCCcceeeeccccCeEEeeec
Q 043350 486 CTYGSRMYVGYVSGYLQILD---LDGNLTASWIAHSSPVLKLAVG 527 (1133)
Q Consensus 486 s~dg~~Lasgs~DG~I~vwd---~~g~~l~~~~~H~~~V~~l~fs 527 (1133)
+|+|++|+.++.+|.+.+|. .+|+....+.+|.+.+...+|+
T Consensus 380 sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~ws 424 (429)
T PRK01742 380 SPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWS 424 (429)
T ss_pred CCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccC
Confidence 99999999999999887776 4678888888898888888887
No 207
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.20 E-value=2.4e-09 Score=127.58 Aligned_cols=275 Identities=17% Similarity=0.127 Sum_probs=174.9
Q ss_pred CeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eC-CCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCC
Q 043350 125 GIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CT-DTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGD 200 (1133)
Q Consensus 125 g~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~-dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~ 200 (1133)
+.+.+|+... |..+ ...+..-. .|+++. ++ +..+++ ..+|.|.+||+.........
T Consensus 222 ~~~~vW~~~~--p~~P-e~~~~~~s--------~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s--------- 281 (555)
T KOG1587|consen 222 GVLLVWSLKN--PNTP-ELVLESPS--------EVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPS--------- 281 (555)
T ss_pred ceEEEEecCC--CCCc-eEEEecCC--------ceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCc---------
Confidence 3789999873 3334 55555433 588888 66 667777 78999999999874332100
Q ss_pred CCCCceeeccCCCCeEEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccc------cCCCCeEEEEEee
Q 043350 201 EDAAPFYESANTSPTMCLMVDCG--NRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQ------AHRGPVLAMIFSS 272 (1133)
Q Consensus 201 ~~~~~~~~~~h~s~V~~la~spd--~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~------gH~~~V~sl~fsp 272 (1133)
.-......|..+|..+.|..+ +.-++++|.||.|+.|+++.-...... .+..... .-...+++++|.+
T Consensus 282 --~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~--~~~~~~~~~~~~~~~~~~~t~~~F~~ 357 (555)
T KOG1587|consen 282 --GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEG--LLLESKKHKGQQSSKAVGATSLKFEP 357 (555)
T ss_pred --ccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhh--cccccccccccccccccceeeEeecc
Confidence 002234568889999999774 355999999999999988741110000 0000001 1134689999988
Q ss_pred CCc--EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEec
Q 043350 273 QGD--LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCA 350 (1133)
Q Consensus 273 ~g~--L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss 350 (1133)
... ++.|+++|.|.-=..... . +...
T Consensus 358 ~~p~~FiVGTe~G~v~~~~r~g~-------------------------~-----------~~~~---------------- 385 (555)
T KOG1587|consen 358 TDPNHFIVGTEEGKVYKGCRKGY-------------------------T-----------PAPE---------------- 385 (555)
T ss_pred CCCceEEEEcCCcEEEEEeccCC-------------------------c-----------cccc----------------
Confidence 765 999999998754222110 0 0000
Q ss_pred CCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEe
Q 043350 351 QPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATR 430 (1133)
Q Consensus 351 ~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~ 430 (1133)
..-+.+..+..|.+.|+.+.++|-... ++..+.|-+++.|.......
T Consensus 386 ----------~~~~~~~~~~~h~g~v~~v~~nPF~~k---------~fls~gDW~vriWs~~~~~~-------------- 432 (555)
T KOG1587|consen 386 ----------VSYKGHSTFITHIGPVYAVSRNPFYPK---------NFLSVGDWTVRIWSEDVIAS-------------- 432 (555)
T ss_pred ----------ccccccccccccCcceEeeecCCCccc---------eeeeeccceeEeccccCCCC--------------
Confidence 001223345667888999999997654 44444488887555431111
Q ss_pred cCCcccCCCCCEEEEEECCCC--eEEEEecCCeEEEEeCCC---CeeEEEecCCcceeE--EecCCCEEEEEecCCeEEE
Q 043350 431 GAGAFVDDTKRTEAMVLTADG--MIWSGCTNGLLVQWDGNG---NRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQI 503 (1133)
Q Consensus 431 p~g~~~~h~~~V~sl~~spdg--~L~sgs~DG~I~vWd~~g---~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~v 503 (1133)
|--.+..+...+.++++||-. .++++..||.|.+||+.. .++.+...+....++ +++.|+.|++|...|++.+
T Consensus 433 Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~ 512 (555)
T KOG1587|consen 433 PLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHI 512 (555)
T ss_pred cchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEE
Confidence 111133444457777777766 889999999999999932 455555555444444 7888999999999999999
Q ss_pred EeCCC
Q 043350 504 LDLDG 508 (1133)
Q Consensus 504 wd~~g 508 (1133)
|++..
T Consensus 513 ~~l~~ 517 (555)
T KOG1587|consen 513 LKLSE 517 (555)
T ss_pred EEcCc
Confidence 99864
No 208
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=1.8e-10 Score=126.83 Aligned_cols=203 Identities=16% Similarity=0.171 Sum_probs=130.9
Q ss_pred CeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCC
Q 043350 214 PTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWES 292 (1133)
Q Consensus 214 ~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~ 292 (1133)
.=.+++|+++|..|++|+.||++|||+... ...+.....|.+.|.+|.|+|||+ |+|-+.| ..+||+.++
T Consensus 146 ~~k~vaf~~~gs~latgg~dg~lRv~~~Ps--------~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~ 216 (398)
T KOG0771|consen 146 QQKVVAFNGDGSKLATGGTDGTLRVWEWPS--------MLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNT 216 (398)
T ss_pred cceEEEEcCCCCEeeeccccceEEEEecCc--------chhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEecc
Confidence 338999999999999999999999999654 255667788999999999999999 9999999 999999987
Q ss_pred CceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecC
Q 043350 293 IEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIE 372 (1133)
Q Consensus 293 ~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h 372 (1133)
+...-...|.+.. +
T Consensus 217 g~~~a~~t~~~k~----------~-------------------------------------------------------- 230 (398)
T KOG0771|consen 217 GAALARKTPFSKD----------E-------------------------------------------------------- 230 (398)
T ss_pred CchhhhcCCcccc----------h--------------------------------------------------------
Confidence 5221111111110 0
Q ss_pred CcceeEEEeCCCCCccccccceEEEEeeC-CCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC
Q 043350 373 GHIENRVDTQSVQDQPVEDEMKVKFVSSN-KKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG 451 (1133)
Q Consensus 373 ~~~v~~l~~sp~g~~~~e~e~~v~lasgs-~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg 451 (1133)
....+.|+.++.. + .+++++-- .-+.+..++.. .+.+ + .+-+..+.......|.+++.+++|
T Consensus 231 --~~~~cRF~~d~~~---~--~l~laa~~~~~~~v~~~~~~---~w~~--~-----~~l~~~~~~~~~~siSsl~VS~dG 293 (398)
T KOG0771|consen 231 --MFSSCRFSVDNAQ---E--TLRLAASQFPGGGVRLCDIS---LWSG--S-----NFLRLRKKIKRFKSISSLAVSDDG 293 (398)
T ss_pred --hhhhceecccCCC---c--eEEEEEecCCCCceeEEEee---eecc--c-----cccchhhhhhccCcceeEEEcCCC
Confidence 0011111111100 0 00011111 11111100000 0000 0 000001122334568899999999
Q ss_pred -eEEEEecCCeEEEEeCCC-CeeEEEe-cCCcceeE--EecCCCEEEEEecCCeEEEEeCCC
Q 043350 452 -MIWSGCTNGLLVQWDGNG-NRVSDIL-HHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 452 -~L~sgs~DG~I~vWd~~g-~~l~~~~-~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g 508 (1133)
+++.|+.||.|-+++... ++++-++ .|...|+. |+||.+++++-+.|..+.|..+..
T Consensus 294 kf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 294 KFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999999944 6666554 49999998 999999999999999999988753
No 209
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.18 E-value=7.2e-09 Score=119.46 Aligned_cols=282 Identities=13% Similarity=0.083 Sum_probs=157.1
Q ss_pred EEEecCCCeEEeccCCCCCCCCCC-eeeeccCCCccccccceEEEEE-eCCCCeEE---ecCCcEEEeeCCCCCCcCcCC
Q 043350 118 IGSGGGTGIFKVPSRAAVHPGRPP-CLELRPHPLKETQAGRFLRNIA-CTDTQLWA---GQECGVRFWNLEDSYEPGAGI 192 (1133)
Q Consensus 118 lasgs~dg~irlW~~~~~~~g~~~-~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla---s~Dg~VrvWdl~~~~~~~~gh 192 (1133)
.++...++.|.+|+..+ .++.. +..+. +.. ....++ ++++++|. ..++.|.+|+++.. ..+...
T Consensus 5 y~~~~~~~~I~~~~~~~--~g~l~~~~~~~-~~~-------~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~-g~l~~~ 73 (330)
T PRK11028 5 YIASPESQQIHVWNLNH--EGALTLLQVVD-VPG-------QVQPMVISPDKRHLYVGVRPEFRVLSYRIADD-GALTFA 73 (330)
T ss_pred EEEcCCCCCEEEEEECC--CCceeeeeEEe-cCC-------CCccEEECCCCCEEEEEECCCCcEEEEEECCC-CceEEe
Confidence 34457789999999852 13321 23332 222 345567 89998775 35789999998631 111000
Q ss_pred CccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEe
Q 043350 193 GGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHK-DGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFS 271 (1133)
Q Consensus 193 ~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~-Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fs 271 (1133)
. .....+....++++|++++|++++. ++.|.+|+++.... .......+. +.....+++|+
T Consensus 74 ------------~--~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~----~~~~~~~~~-~~~~~~~~~~~ 134 (330)
T PRK11028 74 ------------A--ESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI----PVAPIQIIE-GLEGCHSANID 134 (330)
T ss_pred ------------e--eecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC----CCCceeecc-CCCcccEeEeC
Confidence 0 0011224578999999999888764 78999999964111 001112222 22346778999
Q ss_pred eCCc-E-EEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEe
Q 043350 272 SQGD-L-WSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWC 349 (1133)
Q Consensus 272 p~g~-L-~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vws 349 (1133)
|+|+ | ++...++.|.+||+++.. .+. +...
T Consensus 135 p~g~~l~v~~~~~~~v~v~d~~~~g-~l~--~~~~--------------------------------------------- 166 (330)
T PRK11028 135 PDNRTLWVPCLKEDRIRLFTLSDDG-HLV--AQEP--------------------------------------------- 166 (330)
T ss_pred CCCCEEEEeeCCCCEEEEEEECCCC-ccc--ccCC---------------------------------------------
Confidence 9998 5 566677999999986410 000 0000
Q ss_pred cCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCC-CCccccccccccceeeccCCceEEEE
Q 043350 350 AQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNK-KEKPHGFLQRSRNAIMGAADAVRRVA 428 (1133)
Q Consensus 350 s~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~-Dg~i~~~~~~~~~~~~~~~~~V~~v~ 428 (1133)
.... +. .+.....+.|+|++++ ++++.. +++|..|+.... .+.-..+..+.
T Consensus 167 --------------~~~~-~~-~g~~p~~~~~~pdg~~---------lyv~~~~~~~v~v~~~~~~---~~~~~~~~~~~ 218 (330)
T PRK11028 167 --------------AEVT-TV-EGAGPRHMVFHPNQQY---------AYCVNELNSSVDVWQLKDP---HGEIECVQTLD 218 (330)
T ss_pred --------------Ccee-cC-CCCCCceEEECCCCCE---------EEEEecCCCEEEEEEEeCC---CCCEEEEEEEe
Confidence 0000 00 0112346788898887 766654 677653322100 00000111222
Q ss_pred EecCCcccCCCCCEEEEEECCCC-eEEEEe-cCCeEEEEeC--CCCe---eEEEecCCc-ceeEEecCCCEEEEEec-CC
Q 043350 429 TRGAGAFVDDTKRTEAMVLTADG-MIWSGC-TNGLLVQWDG--NGNR---VSDILHHQC-AVQCFCTYGSRMYVGYV-SG 499 (1133)
Q Consensus 429 ~~p~g~~~~h~~~V~sl~~spdg-~L~sgs-~DG~I~vWd~--~g~~---l~~~~~h~~-~V~~fs~dg~~Lasgs~-DG 499 (1133)
..|.. +. .......+.++|++ +++++. .++.|.+|++ ++.. +..+..... .-..++|+|++|+++.. ++
T Consensus 219 ~~p~~-~~-~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~ 296 (330)
T PRK11028 219 MMPAD-FS-DTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSH 296 (330)
T ss_pred cCCCc-CC-CCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCC
Confidence 11211 11 12234468899999 787775 4789999998 3322 222222111 11239999999998885 89
Q ss_pred eEEEEeCC
Q 043350 500 YLQILDLD 507 (1133)
Q Consensus 500 ~I~vwd~~ 507 (1133)
+|.+|+++
T Consensus 297 ~v~v~~~~ 304 (330)
T PRK11028 297 HISVYEID 304 (330)
T ss_pred cEEEEEEc
Confidence 99999875
No 210
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.13 E-value=1.7e-09 Score=113.30 Aligned_cols=201 Identities=13% Similarity=0.133 Sum_probs=137.3
Q ss_pred eEEEEE-eCC-----CCeEEecCCcEEEeeCCCCC------CcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC-CC
Q 043350 158 FLRNIA-CTD-----TQLWAGQECGVRFWNLEDSY------EPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC-GN 224 (1133)
Q Consensus 158 ~V~~v~-s~d-----g~llas~Dg~VrvWdl~~~~------~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp-d~ 224 (1133)
+++.+. .|+ -++||+.+..+|+|.+.... ..+..+ ..+.+..|+++..|+. +.
T Consensus 98 P~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~--------------kns~~~aPlTSFDWne~dp 163 (364)
T KOG0290|consen 98 PVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNN--------------KNSEFCAPLTSFDWNEVDP 163 (364)
T ss_pred CccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccC--------------cccccCCcccccccccCCc
Confidence 666666 443 36888888899999987421 111111 1334567999999998 88
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceeeEe--C
Q 043350 225 RLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSLSL--K 300 (1133)
Q Consensus 225 ~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l~~--~ 300 (1133)
++|.+.|-|-+..|||++.+. .......+.+|...|..|+|...+. ++|+|.||.||++|++....+--. .
T Consensus 164 ~~igtSSiDTTCTiWdie~~~-----~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~ 238 (364)
T KOG0290|consen 164 NLIGTSSIDTTCTIWDIETGV-----SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYED 238 (364)
T ss_pred ceeEeecccCeEEEEEEeecc-----ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecC
Confidence 999999999999999998731 1123446889999999999999776 999999999999999874332111 1
Q ss_pred CCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecC-CCceeEEEecCCcceeEE
Q 043350 301 PEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDAR-SKELLKVFNIEGHIENRV 379 (1133)
Q Consensus 301 ~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~-tg~~l~~~~~h~~~v~~l 379 (1133)
|... ..+..++. ...+..+++.- ......|.+-|+| -..++..+.+|...|+++
T Consensus 239 p~~~-----------------~pLlRLsw-nkqDpnymATf-------~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgI 293 (364)
T KOG0290|consen 239 PSPS-----------------TPLLRLSW-NKQDPNYMATF-------AMDSNKVVILDIRVPCTPVARLRNHQASVNGI 293 (364)
T ss_pred CCCC-----------------Ccceeecc-CcCCchHHhhh-------hcCCceEEEEEecCCCcceehhhcCcccccce
Confidence 2100 01111111 12222333222 0234678888998 567889999999999999
Q ss_pred EeCCCCCccccccceEEEEeeCCCCcccccc
Q 043350 380 DTQSVQDQPVEDEMKVKFVSSNKKEKPHGFL 410 (1133)
Q Consensus 380 ~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~ 410 (1133)
+|.|.... .|.+++.|..+..|+
T Consensus 294 aWaPhS~~--------hictaGDD~qaliWD 316 (364)
T KOG0290|consen 294 AWAPHSSS--------HICTAGDDCQALIWD 316 (364)
T ss_pred EecCCCCc--------eeeecCCcceEEEEe
Confidence 99997653 288888888776554
No 211
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.11 E-value=3.8e-09 Score=118.89 Aligned_cols=87 Identities=15% Similarity=0.216 Sum_probs=62.9
Q ss_pred CEEEEEECCCC-eEEEEecCCeEEEEeCCCC-eeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCC-CCcceeee
Q 043350 441 RTEAMVLTADG-MIWSGCTNGLLVQWDGNGN-RVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLD-GNLTASWI 515 (1133)
Q Consensus 441 ~V~sl~~spdg-~L~sgs~DG~I~vWd~~g~-~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~ 515 (1133)
.|...+|+||| +|++.+.||.++|||...+ ++..++.--+...| |||||+||++|+.|-.|.||.+. .+++..=+
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq 371 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ 371 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc
Confidence 56667777888 8888888888888888553 33333333344454 88888888888888888888876 45666667
Q ss_pred ccccCeEEeeec
Q 043350 516 AHSSPVLKLAVG 527 (1133)
Q Consensus 516 ~H~~~V~~l~fs 527 (1133)
||...|..|+|+
T Consensus 372 GHkSWVs~VaFD 383 (636)
T KOG2394|consen 372 GHKSWVSVVAFD 383 (636)
T ss_pred ccccceeeEeec
Confidence 888888888886
No 212
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=9.2e-10 Score=123.58 Aligned_cols=219 Identities=14% Similarity=0.244 Sum_probs=142.8
Q ss_pred eeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCccccc-ccccCCCCeEEEEEeeCCc---EEEEeCC
Q 043350 207 YESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGL-SWQAHRGPVLAMIFSSQGD---LWSGGEG 282 (1133)
Q Consensus 207 ~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~-~l~gH~~~V~sl~fsp~g~---L~Sgs~D 282 (1133)
.+.+|.+-|.||+|+.+|.+|++||.|-.+.|||.-. .++++ .-.||.+.|.++.|-|... ++||+.|
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~--------~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD 116 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFE--------YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD 116 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchh--------cceeeeeecccccceeEEeeeccCCCeEEEeccCc
Confidence 4568899999999999999999999999999999764 13344 3468999999999999743 9999999
Q ss_pred CcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCC
Q 043350 283 GVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARS 362 (1133)
Q Consensus 283 gtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~t 362 (1133)
..|+++|+...... +.|. ..
T Consensus 117 k~i~lfdl~~~~~~-----------------------------------------------------~~d~-------~~ 136 (758)
T KOG1310|consen 117 KLIKLFDLDSSKEG-----------------------------------------------------GMDH-------GM 136 (758)
T ss_pred ceEEEEeccccccc-----------------------------------------------------cccc-------Cc
Confidence 99999999641000 0000 01
Q ss_pred CceeEEEecCCcceeEEEeCCCC-CccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCC
Q 043350 363 KELLKVFNIEGHIENRVDTQSVQ-DQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKR 441 (1133)
Q Consensus 363 g~~l~~~~~h~~~v~~l~~sp~g-~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~ 441 (1133)
.+....+..|...|..++..|++ .. +.+++.||+++.++-+.-..-. +...+.....+ +....-.
T Consensus 137 ~~~~~~~~cht~rVKria~~p~~Pht---------fwsasEDGtirQyDiREph~c~-p~~~~~~~l~n----y~~~lie 202 (758)
T KOG1310|consen 137 EETTRCWSCHTDRVKRIATAPNGPHT---------FWSASEDGTIRQYDIREPHVCN-PDEDCPSILVN----YNPQLIE 202 (758)
T ss_pred cchhhhhhhhhhhhhheecCCCCCce---------EEEecCCcceeeecccCCccCC-ccccccHHHHH----hchhhhe
Confidence 11223334566777788888877 44 8899999999855544222111 01111111111 1112234
Q ss_pred EEEEEECCCC--eEEEEecCCeEEEEeCC---------CC----------eeEEEec-CC--------cceeE-----Ee
Q 043350 442 TEAMVLTADG--MIWSGCTNGLLVQWDGN---------GN----------RVSDILH-HQ--------CAVQC-----FC 486 (1133)
Q Consensus 442 V~sl~~spdg--~L~sgs~DG~I~vWd~~---------g~----------~l~~~~~-h~--------~~V~~-----fs 486 (1133)
..++.++|.. +|+.|+.|-..++||.. +. |++.+.. |. ..++| |+
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn 282 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN 282 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence 5677788876 99999999999999931 11 2222211 11 12322 88
Q ss_pred cCCCEEEEEecCCeEEEEeCC
Q 043350 487 TYGSRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 487 ~dg~~Lasgs~DG~I~vwd~~ 507 (1133)
|+|.-|.+.-..-.|+++|+.
T Consensus 283 pNGtElLvs~~gEhVYlfdvn 303 (758)
T KOG1310|consen 283 PNGTELLVSWGGEHVYLFDVN 303 (758)
T ss_pred CCCcEEEEeeCCeEEEEEeec
Confidence 888766666666678888886
No 213
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.06 E-value=5.9e-09 Score=127.19 Aligned_cols=256 Identities=14% Similarity=0.229 Sum_probs=155.6
Q ss_pred cCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEE
Q 043350 210 ANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKI 287 (1133)
Q Consensus 210 ~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~i 287 (1133)
-|.+.|..++.++ ++.+++|||.||+||+|+...-.... ..++...++.--...+.++.+.+.|+ ++.++.||.|++
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence 4666777888877 55999999999999999987432211 12233445554578899999999999 999999999999
Q ss_pred EeCCCC-ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCcee
Q 043350 288 WPWESI-EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELL 366 (1133)
Q Consensus 288 Wdl~~~-~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l 366 (1133)
.+++.. ........ ..+.-.-.++.++++. .+..+..+ . ..++....+.|..||+++..-+
T Consensus 1125 ~~id~~~~~~~~~~~--~ri~n~~~~g~vv~m~------a~~~~~~S--~--------~lvy~T~~~~iv~~D~r~~~~~ 1186 (1431)
T KOG1240|consen 1125 LRIDHYNVSKRVATQ--VRIPNLKKDGVVVSMH------AFTAIVQS--H--------VLVYATDLSRIVSWDTRMRHDA 1186 (1431)
T ss_pred EEccccccccceeee--eecccccCCCceEEee------cccccccc--e--------eEEEEEeccceEEecchhhhhH
Confidence 998752 11100000 0000000000011111 11111111 1 2233356788999999977666
Q ss_pred EEE--ecCCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccccccccee----eccCCceEEEEEecCCcccCCCC
Q 043350 367 KVF--NIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAI----MGAADAVRRVATRGAGAFVDDTK 440 (1133)
Q Consensus 367 ~~~--~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~----~~~~~~V~~v~~~p~g~~~~h~~ 440 (1133)
.++ +...+.|++++.+|.+.+ ++.|+..|.+..|+.|-...+ .++..++..+..+|
T Consensus 1187 w~lk~~~~hG~vTSi~idp~~~W---------lviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~--------- 1248 (1431)
T KOG1240|consen 1187 WRLKNQLRHGLVTSIVIDPWCNW---------LVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCP--------- 1248 (1431)
T ss_pred HhhhcCccccceeEEEecCCceE---------EEEecCCceEEEEEeecCceeecccCcccCCcceEEeec---------
Confidence 544 345567999999999999 999999999877776632221 12233444444332
Q ss_pred CEEEEEECCC-C-eEEEEe-cCCeEEEEeC-CCCeeEEEecC-C-------------------cceeE-EecCCCEEEEE
Q 043350 441 RTEAMVLTAD-G-MIWSGC-TNGLLVQWDG-NGNRVSDILHH-Q-------------------CAVQC-FCTYGSRMYVG 495 (1133)
Q Consensus 441 ~V~sl~~spd-g-~L~sgs-~DG~I~vWd~-~g~~l~~~~~h-~-------------------~~V~~-fs~dg~~Lasg 495 (1133)
+.+. . .+.+|+ ..+.|.+|++ .|.+...+-.. . ..+.| +.--+..+.+|
T Consensus 1249 ------~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltg 1322 (1431)
T KOG1240|consen 1249 ------TYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTG 1322 (1431)
T ss_pred ------cCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeec
Confidence 2222 2 344444 5778999999 55554444322 1 11223 44455688889
Q ss_pred ecCCeEEEEeCCC
Q 043350 496 YVSGYLQILDLDG 508 (1133)
Q Consensus 496 s~DG~I~vwd~~g 508 (1133)
+.|+.|+.||...
T Consensus 1323 gsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1323 GSDMKIRKWDPTR 1335 (1431)
T ss_pred CCccceeeccCCC
Confidence 9999999999764
No 214
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.06 E-value=8.9e-10 Score=115.38 Aligned_cols=151 Identities=15% Similarity=0.215 Sum_probs=117.9
Q ss_pred CCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCC-CCeEE--ecCCcEEEeeCCCCCC
Q 043350 112 QPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTD-TQLWA--GQECGVRFWNLEDSYE 187 (1133)
Q Consensus 112 ~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~d-g~lla--s~Dg~VrvWdl~~~~~ 187 (1133)
.-++.+|.+.|-|.+..|||+++...+.. ...|-+|.. .|..|+ ..+ .+++| |.||.||+||++....
T Consensus 160 e~dp~~igtSSiDTTCTiWdie~~~~~~v-kTQLIAHDK-------EV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH 231 (364)
T KOG0290|consen 160 EVDPNLIGTSSIDTTCTIWDIETGVSGTV-KTQLIAHDK-------EVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH 231 (364)
T ss_pred cCCcceeEeecccCeEEEEEEeeccccce-eeEEEecCc-------ceeEEEeccCccceEEEecCCCcEEEEEeccccc
Confidence 45778999999999999999985322333 567888998 999999 553 47777 9999999999987422
Q ss_pred cCcCCCccccCCCCCCCceeec-cC-CCCeEEEEEeC-CCCEEEEEeCC-CeEEEEeCCCCCCCCCCCcccccccccCCC
Q 043350 188 PGAGIGGRVRRGDEDAAPFYES-AN-TSPTMCLMVDC-GNRLVWTGHKD-GKIRSWKMDQTLDDANNPFKEGLSWQAHRG 263 (1133)
Q Consensus 188 ~~~gh~~~v~~g~~~~~~~~~~-~h-~s~V~~la~sp-d~~~LaSgs~D-g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~ 263 (1133)
. -.++. .. ..|..-|+|++ |-+++||-..| ..|.|-|++. +...+..+++|.+
T Consensus 232 S----------------TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~-------P~tpva~L~~H~a 288 (364)
T KOG0290|consen 232 S----------------TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV-------PCTPVARLRNHQA 288 (364)
T ss_pred c----------------eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC-------CCcceehhhcCcc
Confidence 1 11111 11 34778889988 67788886665 5799999986 2267789999999
Q ss_pred CeEEEEEeeCCc--EEEEeCCCcEEEEeCCCC
Q 043350 264 PVLAMIFSSQGD--LWSGGEGGVIKIWPWESI 293 (1133)
Q Consensus 264 ~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~ 293 (1133)
.|++|+|.|... |.|||.|..+.+||+...
T Consensus 289 ~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 289 SVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred cccceEecCCCCceeeecCCcceEEEEecccc
Confidence 999999999866 999999999999999763
No 215
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=1.7e-09 Score=120.48 Aligned_cols=308 Identities=14% Similarity=0.141 Sum_probs=189.2
Q ss_pred CCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE-ecCCcEEE
Q 043350 102 ADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA-GQECGVRF 179 (1133)
Q Consensus 102 ~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla-s~Dg~Vrv 179 (1133)
..+.+..+.|...|..|++||.|..+-+|+... +.+.+.-..+|....-|+. -|- +.+..+.. +.||.|++
T Consensus 141 H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~---~~~~l~f~SGH~~NvfQaK----FiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 141 HKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVS---GSPKLSFESGHCNNVFQAK----FIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred CCCccceeeecccCceeeccCccceEEeehhhc---cCcccccccccccchhhhh----ccCCCCCcCceeccccCceee
Confidence 335555689999999999999999999999774 4442223345665332221 123 44555555 89999999
Q ss_pred eeCCC-CCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccc
Q 043350 180 WNLED-SYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCG-NRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLS 257 (1133)
Q Consensus 180 Wdl~~-~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd-~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~ 257 (1133)
=.+.. .+... ...+..|.++|.-++..|+ ...|.|++.|+.+.-.|+.... +...+.+
T Consensus 214 s~i~~t~~~e~---------------t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~-----pa~~~~c 273 (559)
T KOG1334|consen 214 SEILETGYVEN---------------TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDV-----PAEKFVC 273 (559)
T ss_pred eeeccccceec---------------ceecccccCccceeeecCCCCCcccccccccceeeeeeccCC-----ccceeee
Confidence 76544 11110 2234568889999999994 5678999999999999988622 2223333
Q ss_pred cccCCC---CeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCC
Q 043350 258 WQAHRG---PVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISS 332 (1133)
Q Consensus 258 l~gH~~---~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~ 332 (1133)
-..+.. ..++++..|... +++|+.|-.+++||.+.... ++.. ..+..+|++
T Consensus 274 r~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~------e~~n----------------~~~~~f~p~-- 329 (559)
T KOG1334|consen 274 READEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDK------EENN----------------GVLDKFCPH-- 329 (559)
T ss_pred eccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhh------cccc----------------chhhhcCCc--
Confidence 344444 568899999876 99999999999999864110 0000 001111110
Q ss_pred CCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccccc
Q 043350 333 TEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQR 412 (1133)
Q Consensus 333 ~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~ 412 (1133)
.......-.|++++++.++.- +.++..|.-|+.|...
T Consensus 330 ----------------------------------hl~~d~~v~ITgl~Ysh~~sE---------lLaSYnDe~IYLF~~~ 366 (559)
T KOG1334|consen 330 ----------------------------------HLVEDDPVNITGLVYSHDGSE---------LLASYNDEDIYLFNKS 366 (559)
T ss_pred ----------------------------------cccccCcccceeEEecCCccc---------eeeeecccceEEeccc
Confidence 000112234778888876665 5666666666533111
Q ss_pred ccceeeccCC--ceEEEEEecCCcccCCCC--CEEEEE-ECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeEE
Q 043350 413 SRNAIMGAAD--AVRRVATRGAGAFVDDTK--RTEAMV-LTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQCF 485 (1133)
Q Consensus 413 ~~~~~~~~~~--~V~~v~~~p~g~~~~h~~--~V~sl~-~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~f 485 (1133)
... ..... .+.. .+.+ ..+++|.. .|-.+- |-|.. ++++|+.-|.|.+|+. .++.++-+.+-..-|+|+
T Consensus 367 -~~~-G~~p~~~s~~~-~~~k-~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCL 442 (559)
T KOG1334|consen 367 -MGD-GSEPDPSSPRE-QYVK-RVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCL 442 (559)
T ss_pred -ccc-CCCCCCCcchh-hccc-hhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEecc
Confidence 000 00000 0000 0000 00233332 244444 34556 9999999999999999 557787787755689996
Q ss_pred ecC--CCEEEEEecCCeEEEEeCC
Q 043350 486 CTY--GSRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 486 s~d--g~~Lasgs~DG~I~vwd~~ 507 (1133)
-|. --.||+.+-|.-|+||.-.
T Consensus 443 EpHP~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 443 EPHPHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred CCCCCCchhhccCCccceeeecCC
Confidence 554 4589999999999999864
No 216
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=1.2e-07 Score=102.38 Aligned_cols=276 Identities=13% Similarity=0.139 Sum_probs=158.6
Q ss_pred ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCC-
Q 043350 172 GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTLDDAN- 249 (1133)
Q Consensus 172 s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~- 249 (1133)
..|-.||+++-..... ....+.....|.||+|-| .+..|+.|+. +-|.+|..+.......
T Consensus 117 ~nddvVriy~ksst~p-----------------t~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~ 178 (445)
T KOG2139|consen 117 TNDDVVRIYDKSSTCP-----------------TKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRN 178 (445)
T ss_pred ccCcEEEEeccCCCCC-----------------ceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccc
Confidence 7789999998665111 112233455799999999 5567888887 4599999864332111
Q ss_pred -----CCcccccccccCCCCeEEEEEeeCCc-EEEEeC-CCcEEEEeCCCCce--eeEeCCCCceEEEEeecceEEEccC
Q 043350 250 -----NPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGE-GGVIKIWPWESIEK--SLSLKPEEKHMAALLVERSFIDLRA 320 (1133)
Q Consensus 250 -----~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~-DgtI~iWdl~~~~~--~l~~~~~~~~l~s~~~d~s~~d~~~ 320 (1133)
....++..-.|| .+|++|+|.+||. |+++|. |..|.|||.+++.. .......+.. .+...
T Consensus 179 ~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~s---------lLkwS- 247 (445)
T KOG2139|consen 179 IRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFS---------LLKWS- 247 (445)
T ss_pred cccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCcee---------eEEEc-
Confidence 111233344566 7999999999999 999985 67899999987421 1112222222 22222
Q ss_pred ceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecC-CCceeEEEecCCcceeEEEeCCCCCccccccceEEEEe
Q 043350 321 QVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDAR-SKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVS 399 (1133)
Q Consensus 321 ~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~-tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~las 399 (1133)
|+++..+.++. |+.+++|... +....+-.. ..+.|..-.|+|+|++ + +++
T Consensus 248 ----------Pdgd~lfaAt~----------davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsf-------L-Lf~ 298 (445)
T KOG2139|consen 248 ----------PDGDVLFAATC----------DAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSF-------L-LFA 298 (445)
T ss_pred ----------CCCCEEEEecc----------cceeeeehhcccceecceec-cCCceeeeeecCCCCE-------E-EEE
Confidence 55566666655 5555555322 333222222 3347888999999987 1 455
Q ss_pred eCCCCccc--cccccccceeeccCCceEEEEEecCCc----c---cCCCCCEEEEEECCCC-eEEEEecCCe--------
Q 043350 400 SNKKEKPH--GFLQRSRNAIMGAADAVRRVATRGAGA----F---VDDTKRTEAMVLTADG-MIWSGCTNGL-------- 461 (1133)
Q Consensus 400 gs~Dg~i~--~~~~~~~~~~~~~~~~V~~v~~~p~g~----~---~~h~~~V~sl~~spdg-~L~sgs~DG~-------- 461 (1133)
.+..-.++ .+.++...... ...++++..-.+-. . .--.+.+.++++.|.| +|++....+.
T Consensus 299 ~sgsp~lysl~f~~~~~~~~~--~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~ 376 (445)
T KOG2139|consen 299 CSGSPRLYSLTFDGEDSVFLR--PQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLH 376 (445)
T ss_pred EcCCceEEEEeecCCCccccC--cccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhh
Confidence 55555555 44444222111 11112211111100 0 1124568899999999 8888765443
Q ss_pred EEEEeCCCCeeEEEe------cCCcceeEEec---CCCEEEEEecCCeEEEEeCC
Q 043350 462 LVQWDGNGNRVSDIL------HHQCAVQCFCT---YGSRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 462 I~vWd~~g~~l~~~~------~h~~~V~~fs~---dg~~Lasgs~DG~I~vwd~~ 507 (1133)
|.+||........+. +......+|+| +|..|.++=..|.|.-|++.
T Consensus 377 i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 377 ISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred hhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 667777443333332 11122333443 56778888888888888763
No 217
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.96 E-value=7.1e-08 Score=116.94 Aligned_cols=146 Identities=16% Similarity=0.196 Sum_probs=122.0
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCC
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDS 185 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~ 185 (1133)
..++++.-++++|+.-+.+.+|+... .+.|. .+.+|.+ .+..+. +.||.+++ |.|.++|+|++++.
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~---dn~p~-~l~GHeG-------~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~ 207 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHE---DNKPI-RLKGHEG-------SIFSIVTSLDGRYIASVSDDRSIRLWPIDSR 207 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccc---cCCcc-eecccCC-------ceEEEEEccCCcEEEEEecCcceeeeecccc
Confidence 45688888999999999999998762 34433 6889999 899998 99999999 99999999999984
Q ss_pred CCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccC-CCC
Q 043350 186 YEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAH-RGP 264 (1133)
Q Consensus 186 ~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH-~~~ 264 (1133)
.... .+--+|...|..+.|.|+ .++|++.|.+.++|+.+. .++..+.+| ...
T Consensus 208 ~~~~----------------~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~---------~~l~~y~~h~g~~ 260 (967)
T KOG0974|consen 208 EVLG----------------CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG---------TQLEVYDEHSGKG 260 (967)
T ss_pred cccC----------------cccccccceeEEEEeccc--eeEEeccceEEEEEeccc---------ceehhhhhhhhcc
Confidence 3221 123367788999999987 999999999999998887 556688888 667
Q ss_pred eEEEEEeeCCc-EEEEeCCCcEEEEeCCC
Q 043350 265 VLAMIFSSQGD-LWSGGEGGVIKIWPWES 292 (1133)
Q Consensus 265 V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~ 292 (1133)
|+.++..+... ++|++.|+.+++|++..
T Consensus 261 iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 261 IWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 99999988777 99999999999999876
No 218
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=2e-08 Score=119.87 Aligned_cols=226 Identities=11% Similarity=0.021 Sum_probs=133.5
Q ss_pred CCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecC---CcEEEeeCCCCCCcCcCCCcccc
Q 043350 124 TGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQE---CGVRFWNLEDSYEPGAGIGGRVR 197 (1133)
Q Consensus 124 dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~D---g~VrvWdl~~~~~~~~gh~~~v~ 197 (1133)
+..|.+||.+ |.. ...+..|.. .+.... +|||+.++ +.+ ..|++||+.+.....
T Consensus 183 ~~~i~i~d~d----g~~-~~~lt~~~~-------~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-------- 242 (429)
T PRK01742 183 PYEVRVADYD----GFN-QFIVNRSSQ-------PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-------- 242 (429)
T ss_pred eEEEEEECCC----CCC-ceEeccCCC-------ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE--------
Confidence 4689999987 544 455666766 788888 99999888 332 369999987632110
Q ss_pred CCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEe--CCCCCCCCCCCcccccccccCCCCeEEEEEeeCC
Q 043350 198 RGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGH-KDGKIRSWK--MDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQG 274 (1133)
Q Consensus 198 ~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs-~Dg~V~vWd--~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g 274 (1133)
.....+...+++|+|||+.|+.++ .+|.+.||. +.+ .....+..|...+.+.+|+|+|
T Consensus 243 ----------l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~---------~~~~~lt~~~~~~~~~~wSpDG 303 (429)
T PRK01742 243 ----------VASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANG---------GTPSQLTSGAGNNTEPSWSPDG 303 (429)
T ss_pred ----------EecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCC---------CCeEeeccCCCCcCCEEECCCC
Confidence 000111234679999999888765 688777765 444 2334556677788899999999
Q ss_pred c-EEEEe-CCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCC
Q 043350 275 D-LWSGG-EGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQP 352 (1133)
Q Consensus 275 ~-L~Sgs-~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d 352 (1133)
+ |+.++ .+|...||+++..... .. .+... . ......+++...++. +.+
T Consensus 304 ~~i~f~s~~~g~~~I~~~~~~~~~-------~~---------~l~~~---~-~~~~~SpDG~~ia~~----------~~~ 353 (429)
T PRK01742 304 QSILFTSDRSGSPQVYRMSASGGG-------AS---------LVGGR---G-YSAQISADGKTLVMI----------NGD 353 (429)
T ss_pred CEEEEEECCCCCceEEEEECCCCC-------eE---------EecCC---C-CCccCCCCCCEEEEE----------cCC
Confidence 9 66554 6788899987531100 00 00000 0 001111233322222 223
Q ss_pred CceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccc-----cccccceeeccCCceEEE
Q 043350 353 LSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGF-----LQRSRNAIMGAADAVRRV 427 (1133)
Q Consensus 353 ~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~-----~~~~~~~~~~~~~~V~~v 427 (1133)
.+.+||+.+++........ ....+.|+|++++ |+.++.++....| +++....+..+.+.+...
T Consensus 354 -~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~---------i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p 421 (429)
T PRK01742 354 -NVVKQDLTSGSTEVLSSTF--LDESPSISPNGIM---------IIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFP 421 (429)
T ss_pred -CEEEEECCCCCeEEecCCC--CCCCceECCCCCE---------EEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCc
Confidence 4556898888754332221 2356789999999 8888888776522 233344444444444444
Q ss_pred EEe
Q 043350 428 ATR 430 (1133)
Q Consensus 428 ~~~ 430 (1133)
+|+
T Consensus 422 ~ws 424 (429)
T PRK01742 422 AWS 424 (429)
T ss_pred ccC
Confidence 444
No 219
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.93 E-value=1.6e-09 Score=119.95 Aligned_cols=226 Identities=14% Similarity=0.159 Sum_probs=160.2
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeC
Q 043350 211 NTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPW 290 (1133)
Q Consensus 211 h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl 290 (1133)
.++| +.+.++.+|+.|+.|+.-|.|..+|..+ ..+..-..-...|.++.|..+.+++.......+.|||-
T Consensus 129 eFGP-Y~~~ytrnGrhlllgGrKGHlAa~Dw~t---------~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~ 198 (545)
T KOG1272|consen 129 EFGP-YHLDYTRNGRHLLLGGRKGHLAAFDWVT---------KKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDN 198 (545)
T ss_pred ccCC-eeeeecCCccEEEecCCccceeeeeccc---------ceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecC
Confidence 4556 7788999999999999999999999886 32322222356789999987777666667888999987
Q ss_pred CCC-ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEE
Q 043350 291 ESI-EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVF 369 (1133)
Q Consensus 291 ~~~-~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~ 369 (1133)
... ..++.- +..+..+. .-+-..++++. +..|.++.-|+.+|+++..+
T Consensus 199 ~GtElHClk~---------------------~~~v~rLe--FLPyHfLL~~~--------~~~G~L~Y~DVS~GklVa~~ 247 (545)
T KOG1272|consen 199 NGTELHCLKR---------------------HIRVARLE--FLPYHFLLVAA--------SEAGFLKYQDVSTGKLVASI 247 (545)
T ss_pred CCcEEeehhh---------------------cCchhhhc--ccchhheeeec--------ccCCceEEEeechhhhhHHH
Confidence 642 111111 11111111 12334455555 66777777788777766554
Q ss_pred ecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECC
Q 043350 370 NIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTA 449 (1133)
Q Consensus 370 ~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~sp 449 (1133)
....+.+. .+...|
T Consensus 248 ~t~~G~~~------------------------------------------------------------------vm~qNP 261 (545)
T KOG1272|consen 248 RTGAGRTD------------------------------------------------------------------VMKQNP 261 (545)
T ss_pred HccCCccc------------------------------------------------------------------hhhcCC
Confidence 33222221 122233
Q ss_pred CC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCC-CcceeeeccccCeEEe
Q 043350 450 DG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG-NLTASWIAHSSPVLKL 524 (1133)
Q Consensus 450 dg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g-~~l~~~~~H~~~V~~l 524 (1133)
-+ .+-+|...|+|.+|+. ...++..+..|.++|.+ +.+.|.|+|+.+.|..|+|||+.. ..+.++.. ..+...+
T Consensus 262 ~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~l 340 (545)
T KOG1272|consen 262 YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNL 340 (545)
T ss_pred ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccc
Confidence 33 5778999999999999 45788899999999999 899999999999999999999985 33333333 4567889
Q ss_pred eecccceeeecccCCeeecc
Q 043350 525 AVGVDHIYSLAAHGGIRGWT 544 (1133)
Q Consensus 525 ~fs~~~L~S~s~Dg~I~lW~ 544 (1133)
+|+.+-++++|....|.+|.
T Consensus 341 s~SqkglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 341 SLSQKGLLALSYGDHVQIWK 360 (545)
T ss_pred ccccccceeeecCCeeeeeh
Confidence 99988888889888999997
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=2.4e-07 Score=110.44 Aligned_cols=234 Identities=12% Similarity=0.099 Sum_probs=138.5
Q ss_pred CeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEe---CCCcEEEEeCCCCce-eeEeCCCCceEEE
Q 043350 234 GKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGG---EGGVIKIWPWESIEK-SLSLKPEEKHMAA 308 (1133)
Q Consensus 234 g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs---~DgtI~iWdl~~~~~-~l~~~~~~~~l~s 308 (1133)
..|.+||.++ .....+..+...+.+.+|+|+|+ |+..+ .+..|.+|++.++.. .+...+...
T Consensus 179 ~~l~~~d~dg---------~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~---- 245 (429)
T PRK03629 179 YELRVSDYDG---------YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHN---- 245 (429)
T ss_pred eeEEEEcCCC---------CCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCc----
Confidence 3788899887 22334455677899999999999 76554 345788999876321 111111100
Q ss_pred EeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCcc
Q 043350 309 LLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQP 388 (1133)
Q Consensus 309 ~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~ 388 (1133)
......+++...++... ...+..|.+||+.+++..+.. .+...+....|+|+++.
T Consensus 246 ----------------~~~~~SPDG~~La~~~~-------~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~- 300 (429)
T PRK03629 246 ----------------GAPAFSPDGSKLAFALS-------KTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQN- 300 (429)
T ss_pred ----------------CCeEECCCCCEEEEEEc-------CCCCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCE-
Confidence 00111133332322211 022335888999888765433 33445678999999998
Q ss_pred ccccceEEEEeeCCC-CccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecC---CeEE
Q 043350 389 VEDEMKVKFVSSNKK-EKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTN---GLLV 463 (1133)
Q Consensus 389 ~e~e~~v~lasgs~D-g~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~D---G~I~ 463 (1133)
|+..+.+ +..+.|. +......+..+.+. ........++||| .|+..+.+ ..|.
T Consensus 301 --------I~f~s~~~g~~~Iy~------~d~~~g~~~~lt~~--------~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~ 358 (429)
T PRK03629 301 --------LAYTSDQAGRPQVYK------VNINGGAPQRITWE--------GSQNQDADVSSDGKFMVMVSSNGGQQHIA 358 (429)
T ss_pred --------EEEEeCCCCCceEEE------EECCCCCeEEeecC--------CCCccCEEECCCCCEEEEEEccCCCceEE
Confidence 7666554 3222111 11111122233221 2234467799999 66665433 3588
Q ss_pred EEeCCCCeeEEEecCC-cceeEEecCCCEEEEEecCCe---EEEEeCCCCcceeeeccccCeEEeeec
Q 043350 464 QWDGNGNRVSDILHHQ-CAVQCFCTYGSRMYVGYVSGY---LQILDLDGNLTASWIAHSSPVLKLAVG 527 (1133)
Q Consensus 464 vWd~~g~~l~~~~~h~-~~V~~fs~dg~~Lasgs~DG~---I~vwd~~g~~l~~~~~H~~~V~~l~fs 527 (1133)
+||+.+.....+.... ..-..|+|||++|+.++.++. +++++++|.....+.+|.+.+...+|+
T Consensus 359 ~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~Ws 426 (429)
T PRK03629 359 KQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWS 426 (429)
T ss_pred EEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCCCcCCcccC
Confidence 8998554444444321 111239999999999987764 788899888888888888888877775
No 221
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=5.1e-09 Score=115.50 Aligned_cols=165 Identities=18% Similarity=0.207 Sum_probs=120.8
Q ss_pred cccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCC
Q 043350 107 QHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLE 183 (1133)
Q Consensus 107 ~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~ 183 (1133)
..+.|.++|..|++|+.||++|+|+.. ...+++....|.. .|.++. ++||++|+ +.| ..+||+.+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~P----s~~t~l~e~~~~~-------eV~DL~FS~dgk~lasig~d-~~~VW~~~ 215 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWP----SMLTILEEIAHHA-------EVKDLDFSPDGKFLASIGAD-SARVWSVN 215 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecC----cchhhhhhHhhcC-------ccccceeCCCCcEEEEecCC-ceEEEEec
Confidence 358899999999999999999999954 3333677777877 999999 99999999 788 99999998
Q ss_pred CCC--CcCcCCCcc-----cc-----------------CCCCCCC--ceeec-----------cCCCCeEEEEEeCCCCE
Q 043350 184 DSY--EPGAGIGGR-----VR-----------------RGDEDAA--PFYES-----------ANTSPTMCLMVDCGNRL 226 (1133)
Q Consensus 184 ~~~--~~~~gh~~~-----v~-----------------~g~~~~~--~~~~~-----------~h~s~V~~la~spd~~~ 226 (1133)
+.. ........+ .+ ++..... ...+. ..+..|.|++.+++|++
T Consensus 216 ~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf 295 (398)
T KOG0771|consen 216 TGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF 295 (398)
T ss_pred cCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE
Confidence 731 111000000 00 0000000 00010 12447999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCCCCCCCCcccc-cccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCC
Q 043350 227 VWTGHKDGKIRSWKMDQTLDDANNPFKEG-LSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWE 291 (1133)
Q Consensus 227 LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~-~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~ 291 (1133)
+|.|+.||.|-|++... ++.+ ..-+.|...|+.|.|+|+.+ +++.|.|.++.+-.+.
T Consensus 296 ~AlGT~dGsVai~~~~~--------lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 296 LALGTMDGSVAIYDAKS--------LQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEeccCCcEEEEEece--------eeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 99999999999999875 1222 24468999999999999988 9999999998887664
No 222
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.91 E-value=8.9e-08 Score=102.93 Aligned_cols=325 Identities=15% Similarity=0.154 Sum_probs=197.1
Q ss_pred eeeccCCCccccccceEEEEE--eCCCCeEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEE
Q 043350 143 LELRPHPLKETQAGRFLRNIA--CTDTQLWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLM 219 (1133)
Q Consensus 143 ~~l~~H~~~~~~~g~~V~~v~--s~dg~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la 219 (1133)
..++||.. .+++.. ..+..++. +.|.++|||--.+..+-+ |.+...-.++++++.
T Consensus 18 ~~~eG~~d-------~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~w---------------psI~~~mP~~~~~~~ 75 (404)
T KOG1409|consen 18 SKIEGSQD-------DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYW---------------PSIYHYMPSPCSAME 75 (404)
T ss_pred hhhcCchh-------hhhhheeccCCCCeEEccccceeeeEEeccccccC---------------chhhhhCCCCceEee
Confidence 34667776 555544 34445555 999999999765533322 334444567899999
Q ss_pred EeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeE
Q 043350 220 VDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLS 298 (1133)
Q Consensus 220 ~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~ 298 (1133)
+.+....|+.|-..|++.-+.+... -+.......+..|...|..+-|+-.-. +++++.|..+ .|-.......
T Consensus 76 y~~e~~~L~vg~~ngtvtefs~sed----fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~-~~hc~e~~~~-- 148 (404)
T KOG1409|consen 76 YVSESRRLYVGQDNGTVTEFALSED----FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQF-AWHCTESGNR-- 148 (404)
T ss_pred eeccceEEEEEEecceEEEEEhhhh----hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccce-EEEeeccCCc--
Confidence 9999999999999999999987531 222355667789999999999998777 9999999876 4533210000
Q ss_pred eCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeE--eecCCCceeEEEecCCcce
Q 043350 299 LKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSL--WDARSKELLKVFNIEGHIE 376 (1133)
Q Consensus 299 ~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~l--WD~~tg~~l~~~~~h~~~v 376 (1133)
-+...... ++.. ..-+..+...++. .+.|.+ .+...-.++.++.+|...+
T Consensus 149 ---lg~Y~~~~------~~t~-----------~~~d~~~~fvGd~--------~gqvt~lr~~~~~~~~i~~~~~h~~~~ 200 (404)
T KOG1409|consen 149 ---LGGYNFET------PASA-----------LQFDALYAFVGDH--------SGQITMLKLEQNGCQLITTFNGHTGEV 200 (404)
T ss_pred ---ccceEeec------cCCC-----------CceeeEEEEeccc--------ccceEEEEEeecCCceEEEEcCcccce
Confidence 00000000 0000 1111112222211 122211 2224556778899999999
Q ss_pred eEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEE
Q 043350 377 NRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWS 455 (1133)
Q Consensus 377 ~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~s 455 (1133)
.+++|.+.... +.+|..|..+..|+.... . ..+.. +.+|...|..+...+-- .+++
T Consensus 201 ~~l~Wd~~~~~---------LfSg~~d~~vi~wdigg~------~----g~~~e----l~gh~~kV~~l~~~~~t~~l~S 257 (404)
T KOG1409|consen 201 TCLKWDPGQRL---------LFSGASDHSVIMWDIGGR------K----GTAYE----LQGHNDKVQALSYAQHTRQLIS 257 (404)
T ss_pred EEEEEcCCCcE---------EEeccccCceEEEeccCC------c----ceeee----eccchhhhhhhhhhhhheeeee
Confidence 99999999988 999999998864432110 0 01111 34556666666665655 8999
Q ss_pred EecCCeEEEEeCCCCeeEEEe------------------------------cC----CcceeE-EecCCC--EEEEEe--
Q 043350 456 GCTNGLLVQWDGNGNRVSDIL------------------------------HH----QCAVQC-FCTYGS--RMYVGY-- 496 (1133)
Q Consensus 456 gs~DG~I~vWd~~g~~l~~~~------------------------------~h----~~~V~~-fs~dg~--~Lasgs-- 496 (1133)
++.||.|.+|+.+-+...+.. .| -+...| .+.+.. +...|.
T Consensus 258 ~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~ 337 (404)
T KOG1409|consen 258 CGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEF 337 (404)
T ss_pred ccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcccccccccee
Confidence 999999999998654332210 01 011111 111111 111111
Q ss_pred -----cCCeEEEEeCCCCcceeeeccccCeEEeeec--ccceeeecccCCeeeccccC
Q 043350 497 -----VSGYLQILDLDGNLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 497 -----~DG~I~vwd~~g~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s 547 (1133)
.+....++|.+..++..+.--...|++|.+. -..|+|+|.|..|++||+.+
T Consensus 338 ~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 338 SVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred EEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 2222334444445566655555678899888 78899999999999999764
No 223
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.89 E-value=1.6e-07 Score=112.35 Aligned_cols=215 Identities=14% Similarity=0.125 Sum_probs=125.4
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCC---CeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-E-EEEeCCCc
Q 043350 210 ANTSPTMCLMVDCGNRLVWTGHKD---GKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-L-WSGGEGGV 284 (1133)
Q Consensus 210 ~h~s~V~~la~spd~~~LaSgs~D---g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L-~Sgs~Dgt 284 (1133)
.+..++.+.+|+|||+.|+..+.+ ..|.+|++.++. ...+..+.+...+++|+|+|+ | ++.+.+|.
T Consensus 201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~---------~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~ 271 (433)
T PRK04922 201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ---------RELVASFRGINGAPSFSPDGRRLALTLSRDGN 271 (433)
T ss_pred cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC---------EEEeccCCCCccCceECCCCCEEEEEEeCCCC
Confidence 345578899999999999887743 469999997622 222333344456789999998 5 45555543
Q ss_pred --EEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCC
Q 043350 285 --IKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARS 362 (1133)
Q Consensus 285 --I~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~t 362 (1133)
|.+||+. +
T Consensus 272 ~~Iy~~d~~----------------------------------------------------------------------~ 281 (433)
T PRK04922 272 PEIYVMDLG----------------------------------------------------------------------S 281 (433)
T ss_pred ceEEEEECC----------------------------------------------------------------------C
Confidence 5555443 2
Q ss_pred CceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCC-CCccccccccccceeeccCCceEEEEEecCCcccCCCCC
Q 043350 363 KELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNK-KEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKR 441 (1133)
Q Consensus 363 g~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~-Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~ 441 (1133)
++. ..+..+......++|+|+++. ++..+. ++....+ .+....+.+..+.+. ...
T Consensus 282 g~~-~~lt~~~~~~~~~~~spDG~~---------l~f~sd~~g~~~iy------~~dl~~g~~~~lt~~--------g~~ 337 (433)
T PRK04922 282 RQL-TRLTNHFGIDTEPTWAPDGKS---------IYFTSDRGGRPQIY------RVAASGGSAERLTFQ--------GNY 337 (433)
T ss_pred CCe-EECccCCCCccceEECCCCCE---------EEEEECCCCCceEE------EEECCCCCeEEeecC--------CCC
Confidence 221 112222223345788999887 665543 3332111 011111222333222 112
Q ss_pred EEEEEECCCC-eEEEEecCC---eEEEEeCCCCeeEEEecCCcce-eEEecCCCEEEEEecC---CeEEEEeCCCCccee
Q 043350 442 TEAMVLTADG-MIWSGCTNG---LLVQWDGNGNRVSDILHHQCAV-QCFCTYGSRMYVGYVS---GYLQILDLDGNLTAS 513 (1133)
Q Consensus 442 V~sl~~spdg-~L~sgs~DG---~I~vWd~~g~~l~~~~~h~~~V-~~fs~dg~~Lasgs~D---G~I~vwd~~g~~l~~ 513 (1133)
....+++|+| .|+..+.++ .|.+||+.+.....+....... .+|+|||++|+..+.+ +.|++++++|.....
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~ 417 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQR 417 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEE
Confidence 3357899999 776654333 6999999554444443321111 2499999988777653 468888998876666
Q ss_pred eeccccCeEEeeec
Q 043350 514 WIAHSSPVLKLAVG 527 (1133)
Q Consensus 514 ~~~H~~~V~~l~fs 527 (1133)
+..+.+.+...+|+
T Consensus 418 l~~~~g~~~~p~ws 431 (433)
T PRK04922 418 LVSADGEVREPAWS 431 (433)
T ss_pred cccCCCCCCCCccC
Confidence 66666666666554
No 224
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.87 E-value=3.3e-07 Score=99.73 Aligned_cols=301 Identities=12% Similarity=0.126 Sum_probs=164.5
Q ss_pred CeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCC
Q 043350 214 PTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWES 292 (1133)
Q Consensus 214 ~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~ 292 (1133)
.+.++.|+.+...|..|+.|| -++++... +........-...|--+-|+..=- |++...-..+++.++..
T Consensus 7 ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~--------~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk 77 (391)
T KOG2110|consen 7 TINFIGFNQDSTLLSVGSKDG-YKIFSCSP--------FEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKK 77 (391)
T ss_pred ceeeeeeccceeEEEccCCCc-eeEEecCc--------hHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEccc
Confidence 466777999999999999998 57777664 111111111122344445553222 44443334577777765
Q ss_pred Ccee---------eEeCCCCceEEEEeecce-EEEccCceeeeccccC-CCCCeEEEEecCCc--eEEE--ecCCCceeE
Q 043350 293 IEKS---------LSLKPEEKHMAALLVERS-FIDLRAQVTVNGACSI-SSTEIKCMLSDHAR--ARVW--CAQPLSFSL 357 (1133)
Q Consensus 293 ~~~~---------l~~~~~~~~l~s~~~d~s-~~d~~~~~~v~~~~~~-~~~~~~~l~S~d~~--i~vw--ss~d~~I~l 357 (1133)
.... +...-..++++++..+.. +.|++..+.+..+... +++.+.+..+-+.. ...+ +...|.|.|
T Consensus 78 ~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 78 KTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred CceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 2111 112222333444433333 5556555544444333 23332332222111 1111 134689999
Q ss_pred eecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccc-cccccccceeeccCCceEEEEEecCCccc
Q 043350 358 WDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPH-GFLQRSRNAIMGAADAVRRVATRGAGAFV 436 (1133)
Q Consensus 358 WD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~-~~~~~~~~~~~~~~~~V~~v~~~p~g~~~ 436 (1133)
||+.+-+.+..+..|.+.+.+++|+++|.+ +|++|..|+|. .+.....+.+. .|. -.
T Consensus 158 ~d~~nl~~v~~I~aH~~~lAalafs~~G~l---------lATASeKGTVIRVf~v~~G~kl~---------eFR----RG 215 (391)
T KOG2110|consen 158 FDTINLQPVNTINAHKGPLAALAFSPDGTL---------LATASEKGTVIRVFSVPEGQKLY---------EFR----RG 215 (391)
T ss_pred EEcccceeeeEEEecCCceeEEEECCCCCE---------EEEeccCceEEEEEEcCCccEee---------eee----CC
Confidence 999999999999999999999999999999 99999999985 22211111110 011 00
Q ss_pred CCCCCEEEEEECCCC-eEEEEecCCeEEEEeCCCCeeEEEecCCcceeEEecCCCEEEEEec-CCeEEEEeCCCCcceee
Q 043350 437 DDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGNGNRVSDILHHQCAVQCFCTYGSRMYVGYV-SGYLQILDLDGNLTASW 514 (1133)
Q Consensus 437 ~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g~~l~~~~~h~~~V~~fs~dg~~Lasgs~-DG~I~vwd~~g~~l~~~ 514 (1133)
-....|.+++|++++ +|.+.+..++|.+|.++................+.+-.+.+.+ .. .+.-.+||.+.+. ...
T Consensus 216 ~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~s-ylps~V~~~~~~~R~F-At~ 293 (391)
T KOG2110|consen 216 TYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATS-YLPSQVSSVLDQSRKF-ATA 293 (391)
T ss_pred ceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhh-hcchhhhhhhhhccce-eEE
Confidence 012358899999999 9999999999999988553322211111111112222222111 11 1222346655332 111
Q ss_pred ecccc---CeEEeee--cccceeeecccCCeeeccccC
Q 043350 515 IAHSS---PVLKLAV--GVDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 515 ~~H~~---~V~~l~f--s~~~L~S~s~Dg~I~lW~l~s 547 (1133)
+...+ .+..+.- ...++..++.||.+..+.+..
T Consensus 294 ~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 294 KLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred EccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 11111 2223321 267888899999999998765
No 225
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.86 E-value=8.4e-07 Score=96.63 Aligned_cols=109 Identities=17% Similarity=0.251 Sum_probs=77.2
Q ss_pred eEEEEEeCCCCeEEecCCcEEEeeCCCC--CCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEe--CC
Q 043350 158 FLRNIACTDTQLWAGQECGVRFWNLEDS--YEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGH--KD 233 (1133)
Q Consensus 158 ~V~~v~s~dg~llas~Dg~VrvWdl~~~--~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs--~D 233 (1133)
.|-+|.-...++++.-...|.|+|+.++ +.++. ....+...++++++++++.+||--+ ..
T Consensus 89 ~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~----------------t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 89 SILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIE----------------TTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred ceEEEEEccceEEEEEcccEEEEecccceeehhhh----------------ccCCCccceEeeccCCCCceEEecCCCCC
Confidence 4555554444555566666999999983 22221 0112334577777777777887533 24
Q ss_pred CeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcE-EEEeC
Q 043350 234 GKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVI-KIWPW 290 (1133)
Q Consensus 234 g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI-~iWdl 290 (1133)
|.|.|||+.. .+....+.+|.++|-+|+|+++|. |+|+|+.|+| ||+.+
T Consensus 153 GdV~l~d~~n--------l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v 203 (391)
T KOG2110|consen 153 GDVVLFDTIN--------LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSV 203 (391)
T ss_pred ceEEEEEccc--------ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEc
Confidence 8999999876 366778899999999999999999 9999999985 55544
No 226
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.86 E-value=9.7e-08 Score=107.85 Aligned_cols=162 Identities=14% Similarity=0.155 Sum_probs=103.8
Q ss_pred CCCCCEEEEecCCCeEEeccCCCCCCCCCCeeee---ccCCCccccccceEEEEE---eCCCCeEE-ecCCcEEEeeCCC
Q 043350 112 QPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLEL---RPHPLKETQAGRFLRNIA---CTDTQLWA-GQECGVRFWNLED 184 (1133)
Q Consensus 112 ~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l---~~H~~~~~~~g~~V~~v~---s~dg~lla-s~Dg~VrvWdl~~ 184 (1133)
.|.|--|..|-..|.+.+.+... .. +..| ..+-. ...|+++. -.++.+++ -.+|.+.++|..-
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~----~~-~sklfne~r~i~-----ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~ 251 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPIN----FE-VSKLFNEERLIN-----KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI 251 (636)
T ss_pred CCCCcceEEeeccCceEEecchh----hH-HHHhhhhccccc-----ccceEEEEEEeCCCceEEEEEecCceEEeeccc
Confidence 45555666777777777666431 11 1111 11221 13688888 34566666 7899999998643
Q ss_pred CCCcC----cCCC-c---ccc--CCCCC-CCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcc
Q 043350 185 SYEPG----AGIG-G---RVR--RGDED-AAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFK 253 (1133)
Q Consensus 185 ~~~~~----~gh~-~---~v~--~g~~~-~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~ 253 (1133)
..... ..+. + .+. .+... ..-..+....++|...+|+|||++||+.|.||.+||++... .+
T Consensus 252 ~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt--------~e 323 (636)
T KOG2394|consen 252 VCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDT--------QE 323 (636)
T ss_pred cccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccH--------HH
Confidence 11100 0000 0 000 01111 11223334456889999999999999999999999999987 13
Q ss_pred cccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCC
Q 043350 254 EGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWE 291 (1133)
Q Consensus 254 ~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~ 291 (1133)
.+..++..-+...||+|+|||+ |++|++|..|.||.+.
T Consensus 324 Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 324 LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 3345556678899999999999 9999999999999873
No 227
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.85 E-value=3.1e-07 Score=109.65 Aligned_cols=217 Identities=13% Similarity=0.129 Sum_probs=127.4
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCC---CeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EE-EEeCCCc
Q 043350 210 ANTSPTMCLMVDCGNRLVWTGHKD---GKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LW-SGGEGGV 284 (1133)
Q Consensus 210 ~h~s~V~~la~spd~~~LaSgs~D---g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~-Sgs~Dgt 284 (1133)
.+..++.+.+|+|||+.|+..+.+ ..|.+||+.++. ...+....+.+.+.+|+|+|+ |+ +.+.+|.
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~---------~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~ 263 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR---------RRVVANFKGSNSAPAWSPDGRTLAVALSRDGN 263 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC---------EEEeecCCCCccceEECCCCCEEEEEEccCCC
Confidence 345578899999999999887643 459999998622 222333344567889999998 54 6677887
Q ss_pred EEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCc
Q 043350 285 IKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKE 364 (1133)
Q Consensus 285 I~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~ 364 (1133)
..||.++. ..+.
T Consensus 264 ~~Iy~~d~--------------------------------------------------------------------~~~~ 275 (427)
T PRK02889 264 SQIYTVNA--------------------------------------------------------------------DGSG 275 (427)
T ss_pred ceEEEEEC--------------------------------------------------------------------CCCC
Confidence 77775421 0011
Q ss_pred eeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCC-CCccccccccccceeeccCCceEEEEEecCCcccCCCCCEE
Q 043350 365 LLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNK-KEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTE 443 (1133)
Q Consensus 365 ~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~-Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~ 443 (1133)
+..+..+........|+|+++. |+..+. ++....+. +......+..+.+. + ....
T Consensus 276 -~~~lt~~~~~~~~~~wSpDG~~---------l~f~s~~~g~~~Iy~------~~~~~g~~~~lt~~--g------~~~~ 331 (427)
T PRK02889 276 -LRRLTQSSGIDTEPFFSPDGRS---------IYFTSDRGGAPQIYR------MPASGGAAQRVTFT--G------SYNT 331 (427)
T ss_pred -cEECCCCCCCCcCeEEcCCCCE---------EEEEecCCCCcEEEE------EECCCCceEEEecC--C------CCcC
Confidence 1112222223345678999887 665443 33332111 11111222333322 1 1123
Q ss_pred EEEECCCC-eEEEEecCC---eEEEEeCCCCeeEEEecC-CcceeEEecCCCEEEEEecCC---eEEEEeCCCCcceeee
Q 043350 444 AMVLTADG-MIWSGCTNG---LLVQWDGNGNRVSDILHH-QCAVQCFCTYGSRMYVGYVSG---YLQILDLDGNLTASWI 515 (1133)
Q Consensus 444 sl~~spdg-~L~sgs~DG---~I~vWd~~g~~l~~~~~h-~~~V~~fs~dg~~Lasgs~DG---~I~vwd~~g~~l~~~~ 515 (1133)
...++||| +|+..+.++ .|.+||+.+.....+..+ ...-.+|+|||++|+.++.++ .+++.++.|.....+.
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~ 411 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLS 411 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEee
Confidence 46799999 777666544 699999955334444332 122224999999888877544 4666677776666666
Q ss_pred ccccCeEEeeec
Q 043350 516 AHSSPVLKLAVG 527 (1133)
Q Consensus 516 ~H~~~V~~l~fs 527 (1133)
.+.+.+...+|+
T Consensus 412 ~~~g~~~~p~ws 423 (427)
T PRK02889 412 VQGGDVREPSWG 423 (427)
T ss_pred cCCCCCCCCccC
Confidence 666666666664
No 228
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=1e-07 Score=108.41 Aligned_cols=270 Identities=14% Similarity=0.120 Sum_probs=167.2
Q ss_pred ccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceeeEeCC--CCceEEEEeecce---------EEEccCce---
Q 043350 259 QAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSLSLKP--EEKHMAALLVERS---------FIDLRAQV--- 322 (1133)
Q Consensus 259 ~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l~~~~--~~~~l~s~~~d~s---------~~d~~~~~--- 322 (1133)
..|...-+.|..+|||+ |+||-.--.|++||+......+.-+. +...+..++.|-+ .+.+.+..
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h 127 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH 127 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee
Confidence 35778889999999999 89999999999999987322222121 1222222222221 12221110
Q ss_pred ---eee----ccccC-CCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccce
Q 043350 323 ---TVN----GACSI-SSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMK 394 (1133)
Q Consensus 323 ---~v~----~~~~~-~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~ 394 (1133)
.+- .++.+ ++.+..+.++ ...|.-+++..|+.+..|......++++.+++...+
T Consensus 128 y~~RIP~~GRDm~y~~~scDly~~gs-----------g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgL------- 189 (703)
T KOG2321|consen 128 YRTRIPKFGRDMKYHKPSCDLYLVGS-----------GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGL------- 189 (703)
T ss_pred eeeecCcCCccccccCCCccEEEeec-----------CcceEEEEccccccccccccccccceeeeecCccce-------
Confidence 011 11221 2333333333 355666788999999999999999999999999889
Q ss_pred EEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCCCCeeE
Q 043350 395 VKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGNGNRVS 473 (1133)
Q Consensus 395 v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g~~l~ 473 (1133)
|++|+.+|.+..|+.+....... -.....+.- .........|+++.|+.+| .+++|..+|.|.+||+....-.
T Consensus 190 --la~Gt~~g~VEfwDpR~ksrv~~-l~~~~~v~s---~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl 263 (703)
T KOG2321|consen 190 --LACGTEDGVVEFWDPRDKSRVGT-LDAASSVNS---HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL 263 (703)
T ss_pred --EEecccCceEEEecchhhhhhee-eecccccCC---CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce
Confidence 99999999999888774432110 000011111 1122344559999999999 9999999999999999553222
Q ss_pred EEecCC--cceeE--Eec-CC-CEEEEEecCCeEEEEeCC-CCcceeeeccccCeEEeeec--ccceeeecccCCeeecc
Q 043350 474 DILHHQ--CAVQC--FCT-YG-SRMYVGYVSGYLQILDLD-GNLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWT 544 (1133)
Q Consensus 474 ~~~~h~--~~V~~--fs~-dg-~~Lasgs~DG~I~vwd~~-g~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~ 544 (1133)
-+..|. .+|.. |.+ ++ ..|++ .....++|||-. |+.......-. .+..+++- +.+++++-.++.+..+=
T Consensus 264 ~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt~-~lND~C~~p~sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 264 LVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPTS-DLNDFCFVPGSGMFFTANESSKMHTYY 341 (703)
T ss_pred eecccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccccC-CcCceeeecCCceEEEecCCCcceeEE
Confidence 333343 45555 333 23 34444 456789999976 56655444433 37777776 66777777776666666
Q ss_pred ccCCCCchhh
Q 043350 545 FTSPSPLDNI 554 (1133)
Q Consensus 545 l~s~~~ld~~ 554 (1133)
+..-+|.-.|
T Consensus 342 iP~LGPaPrW 351 (703)
T KOG2321|consen 342 IPSLGPAPRW 351 (703)
T ss_pred ccccCCCchh
Confidence 6555554433
No 229
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.84 E-value=1.5e-06 Score=92.98 Aligned_cols=74 Identities=19% Similarity=0.384 Sum_probs=66.2
Q ss_pred ccCCCCCEEEEEECCCC-eEEEEecCCe-EEEEeC-CCCeeEEEec--CCcceeE--EecCCCEEEEEecCCeEEEEeCC
Q 043350 435 FVDDTKRTEAMVLTADG-MIWSGCTNGL-LVQWDG-NGNRVSDILH--HQCAVQC--FCTYGSRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 435 ~~~h~~~V~sl~~spdg-~L~sgs~DG~-I~vWd~-~g~~l~~~~~--h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~ 507 (1133)
...|...|.+++...+| ++||+|..|+ |+|||. +|..++++.. ....|.| |||++.+||++|..|+|.|+.+.
T Consensus 177 I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 177 INAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred EEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEee
Confidence 46788899999999999 9999999998 789999 8899999976 4567888 99999999999999999999986
Q ss_pred C
Q 043350 508 G 508 (1133)
Q Consensus 508 g 508 (1133)
.
T Consensus 257 ~ 257 (346)
T KOG2111|consen 257 D 257 (346)
T ss_pred c
Confidence 4
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.80 E-value=7e-07 Score=107.01 Aligned_cols=201 Identities=13% Similarity=0.072 Sum_probs=119.0
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeC---CCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-E-EEEeCCCc
Q 043350 210 ANTSPTMCLMVDCGNRLVWTGHK---DGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-L-WSGGEGGV 284 (1133)
Q Consensus 210 ~h~s~V~~la~spd~~~LaSgs~---Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L-~Sgs~Dgt 284 (1133)
.+..++.+.+|+|||+.|+..+. +..|.+||+.+ .....+..+.+.+.+.+|+|+|+ | ++.+.++.
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~---------g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~ 269 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET---------GQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGN 269 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC---------CcEEEeecCCCcccCcEECCCCCEEEEEEecCCC
Confidence 45668999999999999888764 46899999986 22234455666788899999998 5 46666655
Q ss_pred EE--EEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCC
Q 043350 285 IK--IWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARS 362 (1133)
Q Consensus 285 I~--iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~t 362 (1133)
.. +||+. +
T Consensus 270 ~~Iy~~d~~----------------------------------------------------------------------~ 279 (435)
T PRK05137 270 TDIYTMDLR----------------------------------------------------------------------S 279 (435)
T ss_pred ceEEEEECC----------------------------------------------------------------------C
Confidence 33 33432 2
Q ss_pred CceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCC-CCccccccccccceeeccCCceEEEEEecCCcccCCCCC
Q 043350 363 KELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNK-KEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKR 441 (1133)
Q Consensus 363 g~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~-Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~ 441 (1133)
++. ..+..+........|+|+++. |+..+. ++... +..+......+..+.+. ...
T Consensus 280 ~~~-~~Lt~~~~~~~~~~~spDG~~---------i~f~s~~~g~~~------Iy~~d~~g~~~~~lt~~--------~~~ 335 (435)
T PRK05137 280 GTT-TRLTDSPAIDTSPSYSPDGSQ---------IVFESDRSGSPQ------LYVMNADGSNPRRISFG--------GGR 335 (435)
T ss_pred Cce-EEccCCCCccCceeEcCCCCE---------EEEEECCCCCCe------EEEEECCCCCeEEeecC--------CCc
Confidence 211 112222233445788999887 665543 33221 01111112223333221 233
Q ss_pred EEEEEECCCC-eEEEEecC---CeEEEEeCCCCeeEEEecCCccee--EEecCCCEEEEEecC------CeEEEEeCCCC
Q 043350 442 TEAMVLTADG-MIWSGCTN---GLLVQWDGNGNRVSDILHHQCAVQ--CFCTYGSRMYVGYVS------GYLQILDLDGN 509 (1133)
Q Consensus 442 V~sl~~spdg-~L~sgs~D---G~I~vWd~~g~~l~~~~~h~~~V~--~fs~dg~~Lasgs~D------G~I~vwd~~g~ 509 (1133)
+....++|+| .|+..+.+ ..|.+|+..+.....+.. ...+. .|+|||+.|+..+.+ ..++++|+.+.
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 4556799999 77665543 368888986654444432 12233 399999988765542 36888888775
Q ss_pred cceee
Q 043350 510 LTASW 514 (1133)
Q Consensus 510 ~l~~~ 514 (1133)
....+
T Consensus 415 ~~~~l 419 (435)
T PRK05137 415 NEREV 419 (435)
T ss_pred ceEEc
Confidence 44333
No 231
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=98.78 E-value=1.1e-08 Score=111.67 Aligned_cols=63 Identities=24% Similarity=0.269 Sum_probs=41.5
Q ss_pred ceEEEEEEEecccccccCceeecccccccc---cccccceeEEEEEEEcCeEEEEEecccccChHHHH
Q 043350 662 AGLLISFWVRKNLRTHVGDVDAAAVPCGFG---RAIGNKGGVGLRIRVYDRTICFVNCHLAAHLEAVN 726 (1133)
Q Consensus 662 ~g~~l~v~~~~~~~~~i~~v~~~~v~~G~~---~~~gnKG~v~~r~~~~~~~~~fvn~Hlaa~~~~~~ 726 (1133)
.+..+++|.|.++...+........+.+.. ....+++.+.+++. +..|+++|+|+.+.....+
T Consensus 72 ~~~g~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~~~H~~~~~~~~~ 137 (249)
T PF03372_consen 72 GGYGVAILSRSPIFSSVSYVFSLFSKPGIRIFRRSSKSKGIVPVSIN--GKPITVVNVHLPSSNDERQ 137 (249)
T ss_dssp SSEEEEEEESSCCCEEEEEEEEEESSSTTCEEEEEEEEEEEEEEEEE--TEEEEEEEEETTSHHHHHH
T ss_pred cCceEEEEEcccccccccccccccccccccccccccccccccccccc--ceEEEeeeccccccchhhh
Confidence 356678899998765444444222223322 33567777777777 9999999999998665533
No 232
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.78 E-value=6.2e-07 Score=109.00 Aligned_cols=193 Identities=12% Similarity=0.034 Sum_probs=137.8
Q ss_pred EEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCce-EEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCce
Q 043350 268 MIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKH-MAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARA 345 (1133)
Q Consensus 268 l~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~-l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i 345 (1133)
..+.-... ++.+..+..+-+||.............++. +.++. .+. .+.+...++++
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~----~~g-------------~s~~~~~i~~g---- 151 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSL----IIG-------------DSAEELYIASG---- 151 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEE----EEe-------------ccCcEEEEEec----
Confidence 34444444 888888999999998753222222222221 11110 111 23555666666
Q ss_pred EEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceE
Q 043350 346 RVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVR 425 (1133)
Q Consensus 346 ~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~ 425 (1133)
+.-+.|.+|+..-.+.-..+.+|.+.+.++.++.++.+ +++.|.|.+++.|.-.......
T Consensus 152 ----sv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~---------i~s~SdDRsiRlW~i~s~~~~~------- 211 (967)
T KOG0974|consen 152 ----SVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRY---------IASVSDDRSIRLWPIDSREVLG------- 211 (967)
T ss_pred ----cccccEEEEeccccCCcceecccCCceEEEEEccCCcE---------EEEEecCcceeeeecccccccC-------
Confidence 66788888888732222368899999999999999999 9999999999866544332211
Q ss_pred EEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeCCCCeeEEEecCCc-ceeE--EecCCCEEEEEecCCeEE
Q 043350 426 RVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGNGNRVSDILHHQC-AVQC--FCTYGSRMYVGYVSGYLQ 502 (1133)
Q Consensus 426 ~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~g~~l~~~~~h~~-~V~~--fs~dg~~Lasgs~DG~I~ 502 (1133)
...-+|..+++.+++.|+ .++|+++|-+.++|+.++..+.++..|.. .|+. ..++...+++++.||.++
T Consensus 212 -------~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk 283 (967)
T KOG0974|consen 212 -------CTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLK 283 (967)
T ss_pred -------cccccccceeEEEEeccc-eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchh
Confidence 113478899999999999 99999999999999999988888888765 4565 566667889999999999
Q ss_pred EEeCCCC
Q 043350 503 ILDLDGN 509 (1133)
Q Consensus 503 vwd~~g~ 509 (1133)
+|++.+.
T Consensus 284 ~~~l~~r 290 (967)
T KOG0974|consen 284 LWDLNGR 290 (967)
T ss_pred hhhhhcc
Confidence 9998764
No 233
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.77 E-value=3.6e-07 Score=98.19 Aligned_cols=270 Identities=17% Similarity=0.234 Sum_probs=151.2
Q ss_pred CeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccC------------CCCeEEEEEeeCCc---EEE
Q 043350 214 PTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAH------------RGPVLAMIFSSQGD---LWS 278 (1133)
Q Consensus 214 ~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH------------~~~V~sl~fsp~g~---L~S 278 (1133)
-+.|+.|+..|.+||||..+|.|.++.-...... .+.-...++.| ...|+.+.|.++++ ++.
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~---ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKG---EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeeccccccc---ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 5889999999999999999999999976542210 11122233333 35789999999877 777
Q ss_pred EeCCCcEEEEeCCCCceee---EeCCC----CceEEEEeecce---EEEc-------cCce-eeeccccCCCCCeEEEEe
Q 043350 279 GGEGGVIKIWPWESIEKSL---SLKPE----EKHMAALLVERS---FIDL-------RAQV-TVNGACSISSTEIKCMLS 340 (1133)
Q Consensus 279 gs~DgtI~iWdl~~~~~~l---~~~~~----~~~l~s~~~d~s---~~d~-------~~~~-~v~~~~~~~~~~~~~l~S 340 (1133)
...|.+|++|.+....... .+... ....+-.-..+. .+.. ..+. .++.+.. .+....++.+
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~-NsD~Et~lSA 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISV-NSDKETFLSA 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeee-cCccceEeec
Confidence 7899999999987621111 01000 000000000000 0000 0111 1222211 2223334444
Q ss_pred cCCceEEEec--CCCceeEeecCCCceeEEEecCCcceeEEEeCCCC-CccccccceEEEEeeCCCCcccccccccc---
Q 043350 341 DHARARVWCA--QPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQ-DQPVEDEMKVKFVSSNKKEKPHGFLQRSR--- 414 (1133)
Q Consensus 341 ~d~~i~vwss--~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g-~~~~e~e~~v~lasgs~Dg~i~~~~~~~~--- 414 (1133)
+|-++.+|.. .|+++.|-|+.-.. +..-...|++..|+|.. .. ++-.|..|+|+..+.|..
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~n----mEeLteVITsaEFhp~~cn~---------f~YSSSKGtIrLcDmR~~aLC 249 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPAN----MEELTEVITSAEFHPHHCNV---------FVYSSSKGTIRLCDMRQSALC 249 (433)
T ss_pred cceeeeeccccccCCceeEEEccccC----HHHHHHHHhhhccCHhHccE---------EEEecCCCcEEEeechhhhhh
Confidence 4344444432 23333333332111 11112357788898853 45 778888999983333311
Q ss_pred ----ceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC--CCCeeEEEecCC--------
Q 043350 415 ----NAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG--NGNRVSDILHHQ-------- 479 (1133)
Q Consensus 415 ----~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~--~g~~l~~~~~h~-------- 479 (1133)
..+....+++..-- |.+--..|..+.|+++| ++++- .--+|++||+ +.+++.++..|.
T Consensus 250 d~hsKlfEepedp~~rsf------fseiIsSISDvKFs~sGryilsR-Dyltvk~wD~nme~~pv~t~~vh~~lr~kLc~ 322 (433)
T KOG1354|consen 250 DAHSKLFEEPEDPSSRSF------FSEIISSISDVKFSHSGRYILSR-DYLTVKLWDLNMEAKPVETYPVHEYLRSKLCS 322 (433)
T ss_pred cchhhhhccccCCcchhh------HHHHhhhhhceEEccCCcEEEEe-ccceeEEEeccccCCcceEEeehHhHHHHHHH
Confidence 11111111211111 23444568889999999 66654 3468999998 457777776653
Q ss_pred ----ccee----E-EecCCCEEEEEecCCeEEEEeCC
Q 043350 480 ----CAVQ----C-FCTYGSRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 480 ----~~V~----~-fs~dg~~Lasgs~DG~I~vwd~~ 507 (1133)
..|. | |+.++.++++|+....+++|++.
T Consensus 323 lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 323 LYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred HhhccchhheeEEEEcCCcceEecccccceEEEecCC
Confidence 2222 3 88888999999999999999965
No 234
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=7e-06 Score=94.03 Aligned_cols=323 Identities=12% Similarity=0.135 Sum_probs=181.4
Q ss_pred eEEEEE-eCCCCeEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEE-----
Q 043350 158 FLRNIA-CTDTQLWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTG----- 230 (1133)
Q Consensus 158 ~V~~v~-s~dg~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSg----- 230 (1133)
..+..+ +++|+++| +.+..++|++...... ++......++++.|+|.+.+|.|-
T Consensus 36 ~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~-------------------~lt~~~~~~~~L~fSP~g~yL~T~e~~~i 96 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFAYSDNQVVKVFEIATLKV-------------------VLCVELKKTYDLLFSPKGNYLLTWEPWAI 96 (566)
T ss_pred cceeEEEcCCCcEEEEEcCCeEEEEEccCCcE-------------------EEEeccceeeeeeeccccccccccccccc
Confidence 445555 99999999 9999999999776421 122223378999999999888652
Q ss_pred eCC-----CeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCCCC-ceeeEeCCCCc
Q 043350 231 HKD-----GKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWESI-EKSLSLKPEEK 304 (1133)
Q Consensus 231 s~D-----g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~~~-~~~l~~~~~~~ 304 (1133)
..+ ..+.+|++.+ . .....+..-...-++..|+.|..|+.=-..+.+.+|++... ...-.++..+.
T Consensus 97 ~~~~~~~~pn~~v~~vet-~-------~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i 168 (566)
T KOG2315|consen 97 YGPKNASNPNVLVYNVET-G-------VQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGI 168 (566)
T ss_pred ccCCCCCCCceeeeeecc-c-------eehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccce
Confidence 122 3466888876 1 11112222212226889998876443334567899988761 11111222222
Q ss_pred eEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCcee-----EEEecCCcceeEE
Q 043350 305 HMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELL-----KVFNIEGHIENRV 379 (1133)
Q Consensus 305 ~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l-----~~~~~h~~~v~~l 379 (1133)
. .+.+. ..+.+...++..... .+.-..++||-..-...- ++|--. +. -.+
T Consensus 169 ~---------~f~lS---------pgp~~~~vAvyvPe~-----kGaPa~vri~~~~~~~~~~~~a~ksFFka-dk-vqm 223 (566)
T KOG2315|consen 169 T---------MLSLS---------PGPEPPFVAVYVPEK-----KGAPASVRIYKYPEEGQHQPVANKSFFKA-DK-VQM 223 (566)
T ss_pred e---------eEEec---------CCCCCceEEEEccCC-----CCCCcEEEEeccccccccchhhhcccccc-ce-eEE
Confidence 2 11111 001111111111100 033455666655421111 111000 01 134
Q ss_pred EeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC---eEEEE
Q 043350 380 DTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG---MIWSG 456 (1133)
Q Consensus 380 ~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg---~L~sg 456 (1133)
.|.+-+.- ..+ |++..-|.+-+.+.+...-.+...++.-..+. ....++|.++.|++++ .++-|
T Consensus 224 ~WN~~gt~-----LLv-LastdVDktn~SYYGEq~Lyll~t~g~s~~V~-------L~k~GPVhdv~W~~s~~EF~VvyG 290 (566)
T KOG2315|consen 224 KWNKLGTA-----LLV-LASTDVDKTNASYYGEQTLYLLATQGESVSVP-------LLKEGPVHDVTWSPSGREFAVVYG 290 (566)
T ss_pred EeccCCce-----EEE-EEEEeecCCCccccccceEEEEEecCceEEEe-------cCCCCCceEEEECCCCCEEEEEEe
Confidence 45544432 111 55555565554444332222222111111111 1346789999999999 45556
Q ss_pred ecCCeEEEEeCCCCeeEEEecCCcceeE--EecCCCEEEEEe---cCCeEEEEeCCC-CcceeeeccccCeEEeeecccc
Q 043350 457 CTNGLLVQWDGNGNRVSDILHHQCAVQC--FCTYGSRMYVGY---VSGYLQILDLDG-NLTASWIAHSSPVLKLAVGVDH 530 (1133)
Q Consensus 457 s~DG~I~vWd~~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs---~DG~I~vwd~~g-~~l~~~~~H~~~V~~l~fs~~~ 530 (1133)
-.=.++.++|++++.+..+.. ++-++ |+|.|++|+.++ .-|.|-|||+.. +++..+.+-...+..-+=+|++
T Consensus 291 fMPAkvtifnlr~~~v~df~e--gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~ 368 (566)
T KOG2315|consen 291 FMPAKVTIFNLRGKPVFDFPE--GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEY 368 (566)
T ss_pred cccceEEEEcCCCCEeEeCCC--CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcE
Confidence 677889999999999988865 33444 999999988877 468999999975 5676677666544333333999
Q ss_pred eeeecc------cCCeeeccccC
Q 043350 531 IYSLAA------HGGIRGWTFTS 547 (1133)
Q Consensus 531 L~S~s~------Dg~I~lW~l~s 547 (1133)
++|+.. |..++||+..-
T Consensus 369 flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 369 FLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EEEEeccccEEecCCeEEEEecC
Confidence 998866 78899999654
No 235
>PRK05421 hypothetical protein; Provisional
Probab=98.75 E-value=2e-07 Score=103.51 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=34.5
Q ss_pred cceeEEEEEEE-cCeEEEEEecccccChHHHHHHHHHHHHHHHhC
Q 043350 696 NKGGVGLRIRV-YDRTICFVNCHLAAHLEAVNRRNADYDHIYRNM 739 (1133)
Q Consensus 696 nKG~v~~r~~~-~~~~~~fvn~Hlaa~~~~~~~Rn~d~~~i~~~~ 739 (1133)
-||++.+.+.+ .+..|.|+|+||.+.....+.|.+++..|.+.+
T Consensus 134 ~r~~l~a~~~~~~g~~l~v~ntHl~~~~~~~~~r~~q~~~l~~~~ 178 (263)
T PRK05421 134 PKSALITEYPLPNGRTLLVVNIHAINFSLGVDVYSKQLEPIGDQI 178 (263)
T ss_pred cceeEEEEEEeCCCCEEEEEEECccccCcChHHHHHHHHHHHHHH
Confidence 38999999998 556799999999876444566888888887654
No 236
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=5.4e-07 Score=104.27 Aligned_cols=292 Identities=13% Similarity=0.123 Sum_probs=175.3
Q ss_pred CeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCC-------CCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcE
Q 043350 214 PTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDD-------ANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVI 285 (1133)
Q Consensus 214 ~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~-------~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI 285 (1133)
...|++|+....++|.|+.||.++|-.+.+...+ .......-+++.||.+.|.-+.|+.+.+ |-|...+|.|
T Consensus 16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI 95 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI 95 (1189)
T ss_pred eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE
Confidence 5789999999999999999999999998753221 1112233457899999999999998888 9999999999
Q ss_pred EEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCce
Q 043350 286 KIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKEL 365 (1133)
Q Consensus 286 ~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~ 365 (1133)
.+|-+-.+.-.-. .+.-++...+.++++..++..++++-.||.+.|-+- || -+||.-
T Consensus 96 iVWmlykgsW~EE----------------MiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv-dG-NRIwgK----- 152 (1189)
T KOG2041|consen 96 IVWMLYKGSWCEE----------------MINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV-DG-NRIWGK----- 152 (1189)
T ss_pred EEEeeecccHHHH----------------HhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee-cc-ceecch-----
Confidence 9997743200000 001111122333344345666666666666666551 11 133321
Q ss_pred eEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCc-eEEEEEecCCcccCCCCCEEE
Q 043350 366 LKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADA-VRRVATRGAGAFVDDTKRTEA 444 (1133)
Q Consensus 366 l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~-V~~v~~~p~g~~~~h~~~V~s 444 (1133)
.+ .+.....+.|++|.+. ++.+-..|.++.++........-+.+. |... |.+......|..
T Consensus 153 --eL--kg~~l~hv~ws~D~~~---------~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~t-----g~~s~~~~kia~ 214 (1189)
T KOG2041|consen 153 --EL--KGQLLAHVLWSEDLEQ---------ALFKKANGETHLYDNQGNFERKLEKDCEVNGT-----GIFSNFPTKIAE 214 (1189)
T ss_pred --hc--chheccceeecccHHH---------HHhhhcCCcEEEecccccHHHhhhhceEEeee-----eeecCCCccccc
Confidence 11 2233446788888876 555555666552211100000000000 1100 111111111222
Q ss_pred EE-------E-CCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecC---------CeEEE
Q 043350 445 MV-------L-TADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVS---------GYLQI 503 (1133)
Q Consensus 445 l~-------~-spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~D---------G~I~v 503 (1133)
+. . -|+. .|+.+..+|.+.+-.. +...-..+... -.|.. |+++|..||+++.+ ..|.+
T Consensus 215 i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg-m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~F 293 (1189)
T KOG2041|consen 215 IEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG-MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHF 293 (1189)
T ss_pred eeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc-cEeecceecCCCcEEEEccCcccccCccccceEEE
Confidence 22 2 2455 8999999999988765 33222222222 33444 99999999998843 37888
Q ss_pred EeCCCCcceeeeccccCeEEeeec-ccceeeecccCCeeeccccC
Q 043350 504 LDLDGNLTASWIAHSSPVLKLAVG-VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 504 wd~~g~~l~~~~~H~~~V~~l~fs-~~~L~S~s~Dg~I~lW~l~s 547 (1133)
|..-|+.+.+++.....|+++.|. +..-+...-|+.|.+=++..
T Consensus 294 ysp~G~i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanIRP 338 (1189)
T KOG2041|consen 294 YSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANIRP 338 (1189)
T ss_pred eccchhheEEEecCCceeeeeEEcCCceEEEEEecceEEEEeecc
Confidence 888888899999999999999998 45555667788877766543
No 237
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.73 E-value=4e-07 Score=97.20 Aligned_cols=322 Identities=7% Similarity=0.016 Sum_probs=192.8
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCce
Q 043350 218 LMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEK 295 (1133)
Q Consensus 218 la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~ 295 (1133)
..|+|+|+++|+++.- .+.|-|..+ -++..+..--+.|..+.|..+.. |.....|+.|.+|++....-
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~t---------lq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew 83 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSET---------LQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW 83 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccch---------hhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeeccee
Confidence 4689999999999876 788888776 33333333356788889998877 66667899999999976433
Q ss_pred eeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCC-ceEEEecCCCceeEeecCCCceeEEEecCCc
Q 043350 296 SLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHA-RARVWCAQPLSFSLWDARSKELLKVFNIEGH 374 (1133)
Q Consensus 296 ~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~-~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~ 374 (1133)
...+.....- -....-|.|+ .+..|+.-+..|.+|.+.+.+.... +-...
T Consensus 84 ~ckIdeg~ag----------------------------ls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~ 134 (447)
T KOG4497|consen 84 YCKIDEGQAG----------------------------LSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKT 134 (447)
T ss_pred EEEeccCCCc----------------------------ceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-ccccc
Confidence 3322222111 1111122233 3344556677888888887664432 22233
Q ss_pred ceeEEEeCCCCCccccccceEEEEeeCCCCccc--ccc-cc---ccceeeccCCceEEEEEecCCc-------------c
Q 043350 375 IENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPH--GFL-QR---SRNAIMGAADAVRRVATRGAGA-------------F 435 (1133)
Q Consensus 375 ~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~--~~~-~~---~~~~~~~~~~~V~~v~~~p~g~-------------~ 435 (1133)
.+..++|+|++++ .+..+.-.... ... -+ ....+.-..-....+.++|+|. +
T Consensus 135 ~~kg~~f~~dg~f---------~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~ 205 (447)
T KOG4497|consen 135 NVKGYAFHPDGQF---------CAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY 205 (447)
T ss_pred CceeEEECCCCce---------eeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee
Confidence 4578999999998 66665543221 111 00 1111222223345677888876 1
Q ss_pred c-CCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-----CCC----------------------------ee--------
Q 043350 436 V-DDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-----NGN----------------------------RV-------- 472 (1133)
Q Consensus 436 ~-~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-----~g~----------------------------~l-------- 472 (1133)
. .-.-.+..+.++|.+ .|+.|+.|+.+++-+- =++ ++
T Consensus 206 aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~ 285 (447)
T KOG4497|consen 206 AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLE 285 (447)
T ss_pred eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccc
Confidence 1 112468889999988 9999999999887531 110 00
Q ss_pred --------------------EEEec------C--CcceeEEecCCCEEEEEec--CCeEEEEeCCCCcceeeeccccCeE
Q 043350 473 --------------------SDILH------H--QCAVQCFCTYGSRMYVGYV--SGYLQILDLDGNLTASWIAHSSPVL 522 (1133)
Q Consensus 473 --------------------~~~~~------h--~~~V~~fs~dg~~Lasgs~--DG~I~vwd~~g~~l~~~~~H~~~V~ 522 (1133)
..++. . ......|++|..|+++-.. -..+.+||+....+....-...+|.
T Consensus 286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~pir 365 (447)
T KOG4497|consen 286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIR 365 (447)
T ss_pred cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhcccee
Confidence 00000 0 0011128999999998763 4689999998755555556678999
Q ss_pred Eeeec--ccceeeecccCCeeeccccCCCCchhhhHHHHhhhhcccccccccceEEEEEEcCCCCCCchhhhhhhcCCCC
Q 043350 523 KLAVG--VDHIYSLAAHGGIRGWTFTSPSPLDNIIRSEIAAKEAVYLRRDDVRILVGTWNVGQGRASHESLLSWLGSVSS 600 (1133)
Q Consensus 523 ~l~fs--~~~L~S~s~Dg~I~lW~l~s~~~ld~~i~~eL~~r~~eyt~~~~lrI~v~TWNv~~~~~~~~~l~~wl~~~~~ 600 (1133)
+..|+ ...|+-+.....+.+|...-+.. .-.+...+.|.-..||..+.. +.- -
T Consensus 366 af~WdP~~prL~vctg~srLY~W~psg~~~--------------V~vP~~GF~i~~l~W~~~g~~---------i~l--~ 420 (447)
T KOG4497|consen 366 AFEWDPGRPRLVVCTGKSRLYFWAPSGPRV--------------VGVPKKGFNIQKLQWLQPGEF---------IVL--C 420 (447)
T ss_pred EEEeCCCCceEEEEcCCceEEEEcCCCceE--------------EecCCCCceeeeEEecCCCcE---------EEE--E
Confidence 99999 55677666666789997543211 112334466777778776432 110 1
Q ss_pred CccEEEEeeeec
Q 043350 601 DVGIVAVGLQEV 612 (1133)
Q Consensus 601 ~~di~vig~QE~ 612 (1133)
+-|-|++.+=|-
T Consensus 421 ~kDafc~a~ve~ 432 (447)
T KOG4497|consen 421 GKDAFCVAIVED 432 (447)
T ss_pred cCCceEEEEecC
Confidence 235677776664
No 238
>PRK11756 exonuclease III; Provisional
Probab=98.71 E-value=9.4e-08 Score=106.69 Aligned_cols=127 Identities=14% Similarity=0.168 Sum_probs=70.4
Q ss_pred EEEEEEcCCCCCCchhhhhhhcCCCCCccEEEEeeeecccccchhhhhhhhhhhcCCCCcchhhHHHHHhhhcCCCCcEE
Q 043350 575 LVGTWNVGQGRASHESLLSWLGSVSSDVGIVAVGLQEVEMGAGFLAMSAAKETVGLEGSAIGQWWQDTIGKALDEGTTFE 654 (1133)
Q Consensus 575 ~v~TWNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~y~ 654 (1133)
.+.||||++.......+.+||.. .+|||++ |||+......+ . .| .+ +.+ |+.+.
T Consensus 2 ri~T~Nv~g~~~~~~~i~~~i~~--~~pDIi~--LQE~~~~~~~~----------------~-~~--~~-~~~--gy~~~ 55 (268)
T PRK11756 2 KFVSFNINGLRARPHQLEAIIEK--HQPDVIG--LQETKVHDEMF----------------P-LE--EV-EAL--GYHVF 55 (268)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHh--cCCCEEE--EEecccccccC----------------C-HH--HH-Hhc--CCEEE
Confidence 57899999865555668889874 5688865 99985321100 0 11 11 112 33332
Q ss_pred EEeeeecceEEEEEEEecccccccCceeeccccccccc--ccccceeEEEEEEEcCeEEEEEecccccCh-----HHHHH
Q 043350 655 RMGSRQLAGLLISFWVRKNLRTHVGDVDAAAVPCGFGR--AIGNKGGVGLRIRVYDRTICFVNCHLAAHL-----EAVNR 727 (1133)
Q Consensus 655 ~v~~~~l~g~~l~v~~~~~~~~~i~~v~~~~v~~G~~~--~~gnKG~v~~r~~~~~~~~~fvn~Hlaa~~-----~~~~~ 727 (1133)
.-....-.|+ +++.|..+.. +. .++.+ .-...+.+.+++...+..|.|+|+|++.+. .+.+.
T Consensus 56 ~~~~~~~~Gv--ailSr~p~~~----~~-----~~~~~~~~~~~~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~~~~~~ 124 (268)
T PRK11756 56 YHGQKGHYGV--ALLSKQTPIA----VR-----KGFPTDDEEAQRRIIMATIPTPNGNLTVINGYFPQGESRDHPTKFPA 124 (268)
T ss_pred EeCCCCCCEE--EEEECCChHH----eE-----ECCCCccccccCCEEEEEEEcCCCCEEEEEEEecCCCCCCcchhHHH
Confidence 2233334564 4577765432 21 12211 112457888888876556999999997653 23344
Q ss_pred HHHHHHHHHHh
Q 043350 728 RNADYDHIYRN 738 (1133)
Q Consensus 728 Rn~d~~~i~~~ 738 (1133)
|.+-+..+...
T Consensus 125 r~~~~~~l~~~ 135 (268)
T PRK11756 125 KRQFYQDLQNY 135 (268)
T ss_pred HHHHHHHHHHH
Confidence 54444444443
No 239
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.70 E-value=4.6e-06 Score=89.42 Aligned_cols=175 Identities=14% Similarity=0.131 Sum_probs=117.3
Q ss_pred CeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEEeCCCCeEEecCCcEEEeeCCCCCCcCcCCCccccCCCCCCC
Q 043350 125 GIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIACTDTQLWAGQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAA 204 (1133)
Q Consensus 125 g~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~s~dg~llas~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~ 204 (1133)
..+-|||-.. .++ +.++.--. +|.+|.-...++++-.++.|.||.+.+..+.+....
T Consensus 75 NkviIWDD~k---~~~-i~el~f~~--------~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~e----------- 131 (346)
T KOG2111|consen 75 NKVIIWDDLK---ERC-IIELSFNS--------EIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIE----------- 131 (346)
T ss_pred ceEEEEeccc---CcE-EEEEEecc--------ceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeee-----------
Confidence 4688998431 333 55554322 688887444455558889999999886332221111
Q ss_pred ceeeccCCCCeEEEEEeCCCCEEEE-EeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCC
Q 043350 205 PFYESANTSPTMCLMVDCGNRLVWT-GHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEG 282 (1133)
Q Consensus 205 ~~~~~~h~s~V~~la~spd~~~LaS-gs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~D 282 (1133)
........+|+.-..+..+||. |-.-|.|.|-|+..... .....+.+|...|.||+.+.+|. +||+|..
T Consensus 132 ---t~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~------~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStk 202 (346)
T KOG2111|consen 132 ---TRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKP------NAPSIINAHDSDIACVALNLQGTLVATASTK 202 (346)
T ss_pred ---cccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCc------CCceEEEcccCceeEEEEcCCccEEEEeccC
Confidence 1111122444443334455554 44569999999875111 23467899999999999999999 9999998
Q ss_pred CcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCC
Q 043350 283 GVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARS 362 (1133)
Q Consensus 283 gtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~t 362 (1133)
||+ |+|||..+
T Consensus 203 GTL---------------------------------------------------------------------IRIFdt~~ 213 (346)
T KOG2111|consen 203 GTL---------------------------------------------------------------------IRIFDTED 213 (346)
T ss_pred cEE---------------------------------------------------------------------EEEEEcCC
Confidence 874 34555566
Q ss_pred CceeEEEecCC--cceeEEEeCCCCCccccccceEEEEeeCCCCccccc
Q 043350 363 KELLKVFNIEG--HIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGF 409 (1133)
Q Consensus 363 g~~l~~~~~h~--~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~ 409 (1133)
|++++.+.... ..+.+++|||+..+ ++++|..|+++.|
T Consensus 214 g~~l~E~RRG~d~A~iy~iaFSp~~s~---------LavsSdKgTlHiF 253 (346)
T KOG2111|consen 214 GTLLQELRRGVDRADIYCIAFSPNSSW---------LAVSSDKGTLHIF 253 (346)
T ss_pred CcEeeeeecCCchheEEEEEeCCCccE---------EEEEcCCCeEEEE
Confidence 77777775433 34889999999999 9999999999844
No 240
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.70 E-value=1.7e-06 Score=103.32 Aligned_cols=203 Identities=10% Similarity=0.045 Sum_probs=116.5
Q ss_pred eEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--e---cCCcEEEeeCCCCCCcCcCCCccccCC
Q 043350 126 IFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--G---QECGVRFWNLEDSYEPGAGIGGRVRRG 199 (1133)
Q Consensus 126 ~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s---~Dg~VrvWdl~~~~~~~~gh~~~v~~g 199 (1133)
.|.+||.+ +.. ...+..+.. .+.+.+ +|||+.++ + .+..|.+|++.+.....
T Consensus 180 ~l~~~d~d----g~~-~~~lt~~~~-------~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~---------- 237 (429)
T PRK03629 180 ELRVSDYD----GYN-QFVVHRSPQ-------PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ---------- 237 (429)
T ss_pred eEEEEcCC----CCC-CEEeecCCC-------ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE----------
Confidence 57777776 444 334444554 677788 99999888 2 24578999987532110
Q ss_pred CCCCCceeeccCCCCeEEEEEeCCCCEEEEE-eCCC--eEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-
Q 043350 200 DEDAAPFYESANTSPTMCLMVDCGNRLVWTG-HKDG--KIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD- 275 (1133)
Q Consensus 200 ~~~~~~~~~~~h~s~V~~la~spd~~~LaSg-s~Dg--~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~- 275 (1133)
.....+.+...+|+|||+.|+.. +.+| .|.+||+.+ .....+..+...+....|+|+|+
T Consensus 238 --------l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t---------g~~~~lt~~~~~~~~~~wSPDG~~ 300 (429)
T PRK03629 238 --------VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS---------GQIRQVTDGRSNNTEPTWFPDSQN 300 (429)
T ss_pred --------ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC---------CCEEEccCCCCCcCceEECCCCCE
Confidence 00111223457899999988754 4455 588889876 22334444555778899999999
Q ss_pred EEEEeC-CCcEEEE--eCCCC-ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecC
Q 043350 276 LWSGGE-GGVIKIW--PWESI-EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQ 351 (1133)
Q Consensus 276 L~Sgs~-DgtI~iW--dl~~~-~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~ 351 (1133)
|+.++. ++...|| ++.+. ...+....... ......+++..+++.+.+ ..
T Consensus 301 I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~--------------------~~~~~SpDG~~Ia~~~~~-------~g 353 (429)
T PRK03629 301 LAYTSDQAGRPQVYKVNINGGAPQRITWEGSQN--------------------QDADVSSDGKFMVMVSSN-------GG 353 (429)
T ss_pred EEEEeCCCCCceEEEEECCCCCeEEeecCCCCc--------------------cCEEECCCCCEEEEEEcc-------CC
Confidence 776665 4555565 44432 11111111000 011111333333333321 12
Q ss_pred CCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCc
Q 043350 352 PLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEK 405 (1133)
Q Consensus 352 d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~ 405 (1133)
...|.+||+.+++.. .+... .......|+||+++ |+.++.++.
T Consensus 354 ~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~---------i~~~s~~~~ 396 (429)
T PRK03629 354 QQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTM---------VIYSSSQGM 396 (429)
T ss_pred CceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCE---------EEEEEcCCC
Confidence 345788998877643 33322 22346789999998 888777764
No 241
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=1e-06 Score=96.65 Aligned_cols=214 Identities=12% Similarity=0.079 Sum_probs=140.1
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCC--CcEEE
Q 043350 212 TSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEG--GVIKI 287 (1133)
Q Consensus 212 ~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~D--gtI~i 287 (1133)
..+|..++.. +..|++|-.+|.+.+|....+... -.++..+..| ..+..|.-++... +++||.. ..++|
T Consensus 105 ~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~h----ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lki 177 (412)
T KOG3881|consen 105 TKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLH----SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKI 177 (412)
T ss_pred cccccchhhc--CCEEEEEecCCcEEEEeccCCccc----cccceeeecC-CceeeeccCCCCCceEecCchhcccceee
Confidence 3455554443 457888899999999998853211 0233344433 5666777666655 6779988 88999
Q ss_pred EeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecC-CCcee
Q 043350 288 WPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDAR-SKELL 366 (1133)
Q Consensus 288 Wdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~-tg~~l 366 (1133)
||++...+.+....-..- .++++....+..+.+.+......++.+ ...+.+++||++ ..+++
T Consensus 178 wdle~~~qiw~aKNvpnD---------~L~LrVPvW~tdi~Fl~g~~~~~fat~--------T~~hqvR~YDt~~qRRPV 240 (412)
T KOG3881|consen 178 WDLEQSKQIWSAKNVPND---------RLGLRVPVWITDIRFLEGSPNYKFATI--------TRYHQVRLYDTRHQRRPV 240 (412)
T ss_pred eecccceeeeeccCCCCc---------cccceeeeeeccceecCCCCCceEEEE--------ecceeEEEecCcccCcce
Confidence 999886444443222111 233333333333444444333444444 678899999999 45789
Q ss_pred EEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEE
Q 043350 367 KVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMV 446 (1133)
Q Consensus 367 ~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~ 446 (1133)
..|.....+++++...|.+.+ |.+|...+.+..|+.+....+. ..+.+-.+.|.++.
T Consensus 241 ~~fd~~E~~is~~~l~p~gn~---------Iy~gn~~g~l~~FD~r~~kl~g--------------~~~kg~tGsirsih 297 (412)
T KOG3881|consen 241 AQFDFLENPISSTGLTPSGNF---------IYTGNTKGQLAKFDLRGGKLLG--------------CGLKGITGSIRSIH 297 (412)
T ss_pred eEeccccCcceeeeecCCCcE---------EEEecccchhheecccCceeec--------------cccCCccCCcceEE
Confidence 999999999999999999999 9999999988766665433211 01345556666676
Q ss_pred ECCCC-eEEEEecCCeEEEEeCCC-Cee
Q 043350 447 LTADG-MIWSGCTNGLLVQWDGNG-NRV 472 (1133)
Q Consensus 447 ~spdg-~L~sgs~DG~I~vWd~~g-~~l 472 (1133)
.+|.+ +|++++-|..|+|+|.+. +++
T Consensus 298 ~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 298 CHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred EcCCCceEEeeccceeEEEeecccchhh
Confidence 77776 788888888888888854 444
No 242
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=98.69 E-value=2.5e-07 Score=103.37 Aligned_cols=76 Identities=16% Similarity=0.182 Sum_probs=50.5
Q ss_pred cceEEEEEEEecccccccCceeecccccccccccccceeEEEEEEEcCeEEEEEecccccCh------HHHHHHHHHHHH
Q 043350 661 LAGLLISFWVRKNLRTHVGDVDAAAVPCGFGRAIGNKGGVGLRIRVYDRTICFVNCHLAAHL------EAVNRRNADYDH 734 (1133)
Q Consensus 661 l~g~~l~v~~~~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~~r~~~~~~~~~fvn~Hlaa~~------~~~~~Rn~d~~~ 734 (1133)
+..-.++|+.|-.+..... .... .++|. ....+||.+.+++.+.+..+.|+|.||.+.. ..-..|..++.+
T Consensus 88 ~~~~G~~iLSr~Pi~~~~~-~~f~-~~~~~-d~~~~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~ 164 (283)
T TIGR03395 88 LEDGGVAIVSKWPIEEKIQ-YIFN-KGCGA-DNLSNKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNE 164 (283)
T ss_pred ccCCEEEEEECCCccccEE-EEcc-CCCCC-ccccCCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHHHHHHH
Confidence 3344556777766543211 1111 23332 2347999999999999999999999998753 124668999999
Q ss_pred HHHhC
Q 043350 735 IYRNM 739 (1133)
Q Consensus 735 i~~~~ 739 (1133)
|.+.+
T Consensus 165 i~~~i 169 (283)
T TIGR03395 165 IQDFI 169 (283)
T ss_pred HHHHH
Confidence 97754
No 243
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=5.8e-06 Score=89.74 Aligned_cols=160 Identities=13% Similarity=0.193 Sum_probs=106.0
Q ss_pred cccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eC-CCCeEE-ecCCcEEEeeCC
Q 043350 107 QHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CT-DTQLWA-GQECGVRFWNLE 183 (1133)
Q Consensus 107 ~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~-dg~lla-s~Dg~VrvWdl~ 183 (1133)
+++..++----+|.+..|-+||+++-.. .. ...|+ |..+ +.|++++ -| .+.-|+ +.-+.|.+|..+
T Consensus 102 r~~aWhqH~~~fava~nddvVriy~kss----t~-pt~Lk-s~sQ-----rnvtclawRPlsaselavgCr~gIciW~~s 170 (445)
T KOG2139|consen 102 RGVAWHQHIIAFAVATNDDVVRIYDKSS----TC-PTKLK-SVSQ-----RNVTCLAWRPLSASELAVGCRAGICIWSDS 170 (445)
T ss_pred eeEeechhhhhhhhhccCcEEEEeccCC----CC-Cceec-chhh-----cceeEEEeccCCcceeeeeecceeEEEEcC
Confidence 3444555444578899999999998763 22 22232 2221 2689999 55 345566 889999999987
Q ss_pred CC-CCcCcCCCccccCCCC--CCCceeeccCCCCeEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCCCCCCCCcccccccc
Q 043350 184 DS-YEPGAGIGGRVRRGDE--DAAPFYESANTSPTMCLMVDCGNRLVWTGHK-DGKIRSWKMDQTLDDANNPFKEGLSWQ 259 (1133)
Q Consensus 184 ~~-~~~~~gh~~~v~~g~~--~~~~~~~~~h~s~V~~la~spd~~~LaSgs~-Dg~V~vWd~~~~~~~~~~~~~~~~~l~ 259 (1133)
.. .... +.++-. ...-+...+| .+|++|.|++||..+++++- |..|+|||.+.+.+ .++. .
T Consensus 171 ~tln~~r------~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~------~pL~-~- 235 (445)
T KOG2139|consen 171 RTLNANR------NIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK------IPLI-P- 235 (445)
T ss_pred ccccccc------ccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc------cccc-c-
Confidence 52 1111 000000 0011222344 68999999999999999986 57899999997433 2222 1
Q ss_pred cCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCC
Q 043350 260 AHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWES 292 (1133)
Q Consensus 260 gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~ 292 (1133)
---+.+.-+.|||||+ |+.+..|+..++|+...
T Consensus 236 ~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q 269 (445)
T KOG2139|consen 236 KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQ 269 (445)
T ss_pred cCCCceeeEEEcCCCCEEEEecccceeeeehhcc
Confidence 2346788999999999 99999999999996554
No 244
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.66 E-value=8.4e-07 Score=101.08 Aligned_cols=250 Identities=14% Similarity=0.129 Sum_probs=149.2
Q ss_pred cccCCCCCEE-EEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCC
Q 043350 109 KPFQPMVEFI-GSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLED 184 (1133)
Q Consensus 109 ~~~~p~g~~l-asgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~ 184 (1133)
+..+|||+|| |||-.--.|+++|+.. . .+.+.-|...+ .|.-.. +.|-.-.+ ..|.+|-+...-+
T Consensus 57 ik~s~DGqY~lAtG~YKP~ikvydlan-----L-SLKFERhlDae-----~V~feiLsDD~SK~v~L~~DR~IefHak~G 125 (703)
T KOG2321|consen 57 IKVSPDGQYLLATGTYKPQIKVYDLAN-----L-SLKFERHLDAE-----VVDFEILSDDYSKSVFLQNDRTIEFHAKYG 125 (703)
T ss_pred eEecCCCcEEEEecccCCceEEEEccc-----c-eeeeeeccccc-----ceeEEEeccchhhheEeecCceeeehhhcC
Confidence 7779999985 6677778899999862 2 34555555522 333222 44433333 6666666544332
Q ss_pred CCC---------cCcCCCcc-----ccCCCCCCCce--------eeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q 043350 185 SYE---------PGAGIGGR-----VRRGDEDAAPF--------YESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMD 242 (1133)
Q Consensus 185 ~~~---------~~~gh~~~-----v~~g~~~~~~~--------~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~ 242 (1133)
..- .+.-|..+ +..|.+.-+-. -+....++++++..++...+|++|+.||.|-.||.+
T Consensus 126 ~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 126 RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred eeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence 100 00001100 00111110000 111234689999999999999999999999999987
Q ss_pred CCCCCCCCCcccccccccCCC-----CeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEE
Q 043350 243 QTLDDANNPFKEGLSWQAHRG-----PVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFI 316 (1133)
Q Consensus 243 ~~~~~~~~~~~~~~~l~gH~~-----~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~ 316 (1133)
.... ...+........|.+ .|+++.|+.+|- ++.|..+|.|.|||+++....+.-.....
T Consensus 206 ~ksr--v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e------------ 271 (703)
T KOG2321|consen 206 DKSR--VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYE------------ 271 (703)
T ss_pred hhhh--heeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCc------------
Confidence 5111 000111112334433 499999999888 99999999999999987433322211111
Q ss_pred EccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEE
Q 043350 317 DLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVK 396 (1133)
Q Consensus 317 d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~ 396 (1133)
.++..+.+....+...++ +.....++|||-.+|+....+..... ++.+++-|++.+
T Consensus 272 -----~pi~~l~~~~~~~q~~v~---------S~Dk~~~kiWd~~~Gk~~asiEpt~~-lND~C~~p~sGm--------- 327 (703)
T KOG2321|consen 272 -----LPIKKLDWQDTDQQNKVV---------SMDKRILKIWDECTGKPMASIEPTSD-LNDFCFVPGSGM--------- 327 (703)
T ss_pred -----cceeeecccccCCCceEE---------ecchHHhhhcccccCCceeeccccCC-cCceeeecCCce---------
Confidence 011112221222223333 34556789999999999888765444 889999999888
Q ss_pred EEeeCCCCccc
Q 043350 397 FVSSNKKEKPH 407 (1133)
Q Consensus 397 lasgs~Dg~i~ 407 (1133)
++++..+..+.
T Consensus 328 ~f~Ane~~~m~ 338 (703)
T KOG2321|consen 328 FFTANESSKMH 338 (703)
T ss_pred EEEecCCCcce
Confidence 88888887774
No 245
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.62 E-value=4.5e-06 Score=99.56 Aligned_cols=213 Identities=15% Similarity=0.127 Sum_probs=121.4
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCC---CeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EE-EEeCCCc-
Q 043350 211 NTSPTMCLMVDCGNRLVWTGHKD---GKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LW-SGGEGGV- 284 (1133)
Q Consensus 211 h~s~V~~la~spd~~~LaSgs~D---g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~-Sgs~Dgt- 284 (1133)
+...+.+.+|+|+|+.|+.++.+ ..|++|++.+ .....+..+.+.+.+++|+|+|+ |+ +.+.++.
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~---------g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 258 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLAT---------GQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNP 258 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCC---------CCEEEeecCCCCccceEECCCCCEEEEEECCCCCc
Confidence 44568888999999999887654 4799999986 22223344556677899999998 54 4454443
Q ss_pred -EEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCC
Q 043350 285 -IKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSK 363 (1133)
Q Consensus 285 -I~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg 363 (1133)
|.+|++.+ +
T Consensus 259 ~i~~~d~~~----------------------------------------------------------------------~ 268 (417)
T TIGR02800 259 DIYVMDLDG----------------------------------------------------------------------K 268 (417)
T ss_pred cEEEEECCC----------------------------------------------------------------------C
Confidence 55555532 1
Q ss_pred ceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCC-CCccccccccccceeeccCCceEEEEEecCCcccCCCCCE
Q 043350 364 ELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNK-KEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRT 442 (1133)
Q Consensus 364 ~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~-Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V 442 (1133)
.. ..+..+........|+|+++. |+..+. .+....+ .+......+..+.+ +...+
T Consensus 269 ~~-~~l~~~~~~~~~~~~s~dg~~---------l~~~s~~~g~~~iy------~~d~~~~~~~~l~~--------~~~~~ 324 (417)
T TIGR02800 269 QL-TRLTNGPGIDTEPSWSPDGKS---------IAFTSDRGGSPQIY------MMDADGGEVRRLTF--------RGGYN 324 (417)
T ss_pred CE-EECCCCCCCCCCEEECCCCCE---------EEEEECCCCCceEE------EEECCCCCEEEeec--------CCCCc
Confidence 11 111111112234467777776 554433 2221100 00001111222221 22334
Q ss_pred EEEEECCCC-eEEEEecCC---eEEEEeCCCCeeEEEecCCccee-EEecCCCEEEEEecCC---eEEEEeCCCCcceee
Q 043350 443 EAMVLTADG-MIWSGCTNG---LLVQWDGNGNRVSDILHHQCAVQ-CFCTYGSRMYVGYVSG---YLQILDLDGNLTASW 514 (1133)
Q Consensus 443 ~sl~~spdg-~L~sgs~DG---~I~vWd~~g~~l~~~~~h~~~V~-~fs~dg~~Lasgs~DG---~I~vwd~~g~~l~~~ 514 (1133)
....++|+| .|+.++.++ .|.+||+.+.....+........ +|+|+|++|+..+.++ .+++.+.+|+....+
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~ 404 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARL 404 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeEC
Confidence 567789999 777777665 78889986544444433222112 4999999988887654 567777777665555
Q ss_pred eccccCeEEeee
Q 043350 515 IAHSSPVLKLAV 526 (1133)
Q Consensus 515 ~~H~~~V~~l~f 526 (1133)
..+.+.+..++|
T Consensus 405 ~~~~g~~~~~~w 416 (417)
T TIGR02800 405 PLGNGDVREPAW 416 (417)
T ss_pred CCCCCCcCCCCC
Confidence 544455554444
No 246
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.61 E-value=1.1e-06 Score=92.64 Aligned_cols=105 Identities=17% Similarity=0.289 Sum_probs=79.5
Q ss_pred eEEEEE-eCCCCeEE---e-cCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeC
Q 043350 158 FLRNIA-CTDTQLWA---G-QECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHK 232 (1133)
Q Consensus 158 ~V~~v~-s~dg~lla---s-~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~ 232 (1133)
.|.+++ +|+|..+| + .++.|.+||++.. .+...+..++.++.|+|+|++|++|+.
T Consensus 61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~--------------------~i~~~~~~~~n~i~wsP~G~~l~~~g~ 120 (194)
T PF08662_consen 61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGK--------------------KIFSFGTQPRNTISWSPDGRFLVLAGF 120 (194)
T ss_pred ceEEEEECcCCCEEEEEEccCCcccEEEcCccc--------------------EeEeecCCCceEEEECCCCCEEEEEEc
Confidence 699999 99998876 2 4679999999631 123334567889999999999999875
Q ss_pred C---CeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeC------CCcEEEEeCCC
Q 043350 233 D---GKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGE------GGVIKIWPWES 292 (1133)
Q Consensus 233 D---g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~------DgtI~iWdl~~ 292 (1133)
+ |.|.+||++. .+.+.. ..| ..++.++|+|+|+ |+|++. |+.++||+...
T Consensus 121 ~n~~G~l~~wd~~~--------~~~i~~-~~~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 121 GNLNGDLEFWDVRK--------KKKIST-FEH-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred cCCCcEEEEEECCC--------CEEeec-ccc-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 4 6799999986 123323 234 3578999999999 877764 78899999865
No 247
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=6.8e-06 Score=94.13 Aligned_cols=318 Identities=12% Similarity=0.092 Sum_probs=176.4
Q ss_pred ccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE-------ecCC----
Q 043350 108 HKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA-------GQEC---- 175 (1133)
Q Consensus 108 ~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla-------s~Dg---- 175 (1133)
+..++++|+++|-+.. ..++|.+... +.. +.+...- .++++. +|.|.+|. ..++
T Consensus 39 v~~~S~~G~lfA~~~~-~~v~i~~~~~---~~~-~lt~~~~---------~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~ 104 (566)
T KOG2315|consen 39 VFAYSNNGRLFAYSDN-QVVKVFEIAT---LKV-VLCVELK---------KTYDLLFSPKGNYLLTWEPWAIYGPKNASN 104 (566)
T ss_pred eEEEcCCCcEEEEEcC-CeEEEEEccC---CcE-EEEeccc---------eeeeeeecccccccccccccccccCCCCCC
Confidence 3567999998887654 6678887663 222 3333222 356666 88777776 2233
Q ss_pred -cEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCccc
Q 043350 176 -GVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKE 254 (1133)
Q Consensus 176 -~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~ 254 (1133)
.+++|++++..... .+... .... .|..|+.|..+.|= -..+.+.+|++.. -.
T Consensus 105 pn~~v~~vet~~~~s---------------~~q~k-~Q~~-W~~qfs~dEsl~ar-lv~nev~f~~~~~---------f~ 157 (566)
T KOG2315|consen 105 PNVLVYNVETGVQRS---------------QIQKK-MQNG-WVPQFSIDESLAAR-LVSNEVQFYDLGS---------FK 157 (566)
T ss_pred Cceeeeeeccceehh---------------heehh-hhcC-cccccccchhhhhh-hhcceEEEEecCC---------cc
Confidence 46689887721111 11111 1112 57788877655322 2346799999886 11
Q ss_pred ccccccCCCCeEEEEEeeCCc---EE-----EEeCCCcEEEEeCCCC-----ceeeEeCCCCceEEEEeecceEEEccCc
Q 043350 255 GLSWQAHRGPVLAMIFSSQGD---LW-----SGGEGGVIKIWPWESI-----EKSLSLKPEEKHMAALLVERSFIDLRAQ 321 (1133)
Q Consensus 255 ~~~l~gH~~~V~sl~fsp~g~---L~-----Sgs~DgtI~iWdl~~~-----~~~l~~~~~~~~l~s~~~d~s~~d~~~~ 321 (1133)
...-.-|...|+.+.++|.+. ++ +.|.=+.|+||..... ...-.|...... .. .|.-.
T Consensus 158 ~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkv--qm-----~WN~~-- 228 (566)
T KOG2315|consen 158 TIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKV--QM-----KWNKL-- 228 (566)
T ss_pred ceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccccccee--EE-----EeccC--
Confidence 112233577899999999855 33 2355567999987621 000001000000 00 11111
Q ss_pred eeeeccccCCCCCeEEEEecC--CceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEe
Q 043350 322 VTVNGACSISSTEIKCMLSDH--ARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVS 399 (1133)
Q Consensus 322 ~~v~~~~~~~~~~~~~l~S~d--~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~las 399 (1133)
.....++++.| .+..-+ -+..++++.++. |.....--...++|.++.|+|++.. +.++-
T Consensus 229 ----------gt~LLvLastdVDktn~SY-YGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s~~E-------F~Vvy 289 (566)
T KOG2315|consen 229 ----------GTALLVLASTDVDKTNASY-YGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPSGRE-------FAVVY 289 (566)
T ss_pred ----------CceEEEEEEEeecCCCccc-cccceEEEEEec-CceEEEecCCCCCceEEEECCCCCE-------EEEEE
Confidence 11122222221 000000 124456666666 3333322234678999999999875 01233
Q ss_pred eCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEe---cCCeEEEEeC-CCCeeEE
Q 043350 400 SNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGC---TNGLLVQWDG-NGNRVSD 474 (1133)
Q Consensus 400 gs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs---~DG~I~vWd~-~g~~l~~ 474 (1133)
|-.--++-.++.+.. .| +.-..++=+++-|+|.| +|+.++ .-|.|-+||. +-+++..
T Consensus 290 GfMPAkvtifnlr~~--------~v----------~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~ 351 (566)
T KOG2315|consen 290 GFMPAKVTIFNLRGK--------PV----------FDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAK 351 (566)
T ss_pred ecccceEEEEcCCCC--------Ee----------EeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccc
Confidence 333333322222211 11 11223445667789999 555444 3588999999 6688888
Q ss_pred EecCCcceeEEecCCCEEEEEe------cCCeEEEEeCCCCcce
Q 043350 475 ILHHQCAVQCFCTYGSRMYVGY------VSGYLQILDLDGNLTA 512 (1133)
Q Consensus 475 ~~~h~~~V~~fs~dg~~Lasgs------~DG~I~vwd~~g~~l~ 512 (1133)
+......+..|+|||+++++++ .|..++||+..|.++.
T Consensus 352 ~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 352 FKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred cccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence 8886666666999999999988 4788999999987653
No 248
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=2.9e-06 Score=93.12 Aligned_cols=245 Identities=11% Similarity=0.150 Sum_probs=152.0
Q ss_pred CeEEEEEeC--CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCC
Q 043350 214 PTMCLMVDC--GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWE 291 (1133)
Q Consensus 214 ~V~~la~sp--d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~ 291 (1133)
.|..++|.- ....|...+.|-.+....+..... ......+.....-+++|.+++.. +|.|++|-.+|.+.+|...
T Consensus 57 ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~--~s~~~~~~~~~l~~~~I~gl~~~-dg~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 57 RISSLLFGVDGETEVLNARSADDDLPKFVIEEFEI--SSSLDDAKTVSLGTKSIKGLKLA-DGTLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhheeecCCceeEeeccccCcccccccccCCcc--ccccccccccccccccccchhhc-CCEEEEEecCCcEEEEecc
Confidence 455566654 344566665777777777664332 11112233445557788888764 5569999999999999987
Q ss_pred CCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCC--CceeEeecCCCceeEEE
Q 043350 292 SIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQP--LSFSLWDARSKELLKVF 369 (1133)
Q Consensus 292 ~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d--~~I~lWD~~tg~~l~~~ 369 (1133)
..... ... ...+..+..+..+...+ ..-.+++.+ +.. ..+.+||+.+.+.+..-
T Consensus 134 ~~d~h----ss~-----------l~~la~g~g~~~~r~~~-~~p~Iva~G--------Gke~~n~lkiwdle~~~qiw~a 189 (412)
T KOG3881|consen 134 SGDLH----SSK-----------LIKLATGPGLYDVRQTD-TDPYIVATG--------GKENINELKIWDLEQSKQIWSA 189 (412)
T ss_pred CCccc----ccc-----------ceeeecCCceeeeccCC-CCCceEecC--------chhcccceeeeecccceeeeec
Confidence 42111 111 11111111111111211 222233334 444 56777777766333221
Q ss_pred ec-CC--------cceeEEEeCCC--CCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCC
Q 043350 370 NI-EG--------HIENRVDTQSV--QDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDD 438 (1133)
Q Consensus 370 ~~-h~--------~~v~~l~~sp~--g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h 438 (1133)
.. .. -+++++.|-+. ... |++++.-+.++.++.+..+ .+|.++.+.
T Consensus 190 KNvpnD~L~LrVPvW~tdi~Fl~g~~~~~---------fat~T~~hqvR~YDt~~qR------RPV~~fd~~-------- 246 (412)
T KOG3881|consen 190 KNVPNDRLGLRVPVWITDIRFLEGSPNYK---------FATITRYHQVRLYDTRHQR------RPVAQFDFL-------- 246 (412)
T ss_pred cCCCCccccceeeeeeccceecCCCCCce---------EEEEecceeEEEecCcccC------cceeEeccc--------
Confidence 11 01 13457777776 455 9999999998766544222 245555444
Q ss_pred CCCEEEEEECCCC-eEEEEecCCeEEEEeCCC-CeeEE-EecCCcceeE--EecCCCEEEEEecCCeEEEEeCCC
Q 043350 439 TKRTEAMVLTADG-MIWSGCTNGLLVQWDGNG-NRVSD-ILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 439 ~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g-~~l~~-~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g 508 (1133)
..++.++...|.+ .|++|..-|.+..||+.+ +.+.. +.+-.+.|.+ .+|.+.+||+++-|..|+|+|++.
T Consensus 247 E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 247 ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred cCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 5678888899999 999999999999999955 55544 6777888888 566677999999999999999986
No 249
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.58 E-value=1.2e-06 Score=92.46 Aligned_cols=106 Identities=12% Similarity=0.228 Sum_probs=80.6
Q ss_pred CCCEEEEEECCCC-eE--EEEecCCeEEEEeCCCCeeEEEecCCcceeEEecCCCEEEEEec---CCeEEEEeCCC-Ccc
Q 043350 439 TKRTEAMVLTADG-MI--WSGCTNGLLVQWDGNGNRVSDILHHQCAVQCFCTYGSRMYVGYV---SGYLQILDLDG-NLT 511 (1133)
Q Consensus 439 ~~~V~sl~~spdg-~L--~sgs~DG~I~vWd~~g~~l~~~~~h~~~V~~fs~dg~~Lasgs~---DG~I~vwd~~g-~~l 511 (1133)
.+.|.+++++|+| .+ +.|..++.|.+||.+++.+.++..+...-.+|+|+|++|++|+. .|.|.+||++. +.+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i 138 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI 138 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe
Confidence 3469999999999 54 44556789999999988888886533323349999999999874 47799999984 344
Q ss_pred eeeeccccCeEEeeec--ccceeeecc------cCCeeecccc
Q 043350 512 ASWIAHSSPVLKLAVG--VDHIYSLAA------HGGIRGWTFT 546 (1133)
Q Consensus 512 ~~~~~H~~~V~~l~fs--~~~L~S~s~------Dg~I~lW~l~ 546 (1133)
.+.. | ..++.++|+ |+++++++. |..+++|+..
T Consensus 139 ~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 139 STFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred eccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 3332 3 347899999 999998865 7889999975
No 250
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.55 E-value=1.5e-06 Score=93.76 Aligned_cols=234 Identities=13% Similarity=0.148 Sum_probs=147.8
Q ss_pred ccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCC-Ccee---eEeCCCCceEEEEeecceEEEccCceeeecc
Q 043350 253 KEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWES-IEKS---LSLKPEEKHMAALLVERSFIDLRAQVTVNGA 327 (1133)
Q Consensus 253 ~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~-~~~~---l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~ 327 (1133)
..+..+.||.+.|+....-|... +++.+.|.++|||--+. +... ....|......+.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y------------------ 76 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEY------------------ 76 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeee------------------
Confidence 45567889999999988888877 99999999999996543 1111 0111222111100
Q ss_pred ccCCCCCeEEEEecCCceEEEecCCCceeEeec----CCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCC
Q 043350 328 CSISSTEIKCMLSDHARARVWCAQPLSFSLWDA----RSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKK 403 (1133)
Q Consensus 328 ~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~----~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~D 403 (1133)
..+...+..+ -..+++.-+-+ ..-..++.+..|...+..+-|+-...+ +++.+.|
T Consensus 77 ----~~e~~~L~vg--------~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~---------V~s~~~d 135 (404)
T KOG1409|consen 77 ----VSESRRLYVG--------QDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEW---------VLSTGKD 135 (404)
T ss_pred ----eccceEEEEE--------EecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCcee---------EEEeccc
Confidence 0111111111 12223322222 233445666778888999999888888 8899888
Q ss_pred Cccc----cccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeC---CCCeeEEEe
Q 043350 404 EKPH----GFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDG---NGNRVSDIL 476 (1133)
Q Consensus 404 g~i~----~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~---~g~~l~~~~ 476 (1133)
..+. ....+.... .+. . ...++.+.-. +.+.|...|.|.+-.+ .-..+.++.
T Consensus 136 k~~~~hc~e~~~~lg~Y-----------~~~------~---~~t~~~~d~~-~~fvGd~~gqvt~lr~~~~~~~~i~~~~ 194 (404)
T KOG1409|consen 136 KQFAWHCTESGNRLGGY-----------NFE------T---PASALQFDAL-YAFVGDHSGQITMLKLEQNGCQLITTFN 194 (404)
T ss_pred cceEEEeeccCCcccce-----------Eee------c---cCCCCceeeE-EEEecccccceEEEEEeecCCceEEEEc
Confidence 8774 111110000 000 0 0000000000 3344445555544444 236788899
Q ss_pred cCCcceeE--EecCCCEEEEEecCCeEEEEeCCCC--cceeeeccccCeEEeeec--ccceeeecccCCeeecccc
Q 043350 477 HHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGN--LTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFT 546 (1133)
Q Consensus 477 ~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~--~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~ 546 (1133)
+|...+.| |.+....|++|+.|..|.+||+-++ ...++.+|.+.|..+..- -+.++|++.||.|.+|+..
T Consensus 195 ~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 195 GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 99999999 7777789999999999999999864 356788999999999887 8899999999999999975
No 251
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.55 E-value=4.7e-07 Score=100.23 Aligned_cols=36 Identities=33% Similarity=0.566 Sum_probs=26.5
Q ss_pred EEEEEEcCCCCCCchhh-hhhhcCCCCCccEEEEeeeeccc
Q 043350 575 LVGTWNVGQGRASHESL-LSWLGSVSSDVGIVAVGLQEVEM 614 (1133)
Q Consensus 575 ~v~TWNv~~~~~~~~~l-~~wl~~~~~~~di~vig~QE~~~ 614 (1133)
.+.||||++.......+ .+||.. .+||| |+|||+..
T Consensus 2 ri~t~Nv~g~~~~~~~~~~~~l~~--~~~DI--v~LQE~~~ 38 (255)
T TIGR00633 2 KIISWNVNGLRARLHKLFLDWLKE--EQPDV--LCLQETKV 38 (255)
T ss_pred EEEEEecccHHHHhhccHHHHHHh--cCCCE--EEEEeccC
Confidence 57899999876655565 788874 45676 57899864
No 252
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.53 E-value=1.3e-05 Score=93.25 Aligned_cols=309 Identities=11% Similarity=0.056 Sum_probs=152.2
Q ss_pred ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCC
Q 043350 172 GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNP 251 (1133)
Q Consensus 172 s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~ 251 (1133)
..++.|.|.|..+.... ..+. ....+-..+.++||++++++++.||.|.++|+...
T Consensus 13 ~~~~~v~viD~~t~~~~----------------~~i~-~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~------- 68 (369)
T PF02239_consen 13 RGSGSVAVIDGATNKVV----------------ARIP-TGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG------- 68 (369)
T ss_dssp GGGTEEEEEETTT-SEE----------------EEEE--STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS-------
T ss_pred cCCCEEEEEECCCCeEE----------------EEEc-CCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc-------
Confidence 67889999998763211 0111 11122234678999999999999999999999871
Q ss_pred cccccccccCCCCeEEEEEeeCCc-E-EEEeCCCcEEEEeCCCCc--eeeEeCCCCceEEEEeecceEEEccCceeeecc
Q 043350 252 FKEGLSWQAHRGPVLAMIFSSQGD-L-WSGGEGGVIKIWPWESIE--KSLSLKPEEKHMAALLVERSFIDLRAQVTVNGA 327 (1133)
Q Consensus 252 ~~~~~~l~gH~~~V~sl~fsp~g~-L-~Sgs~DgtI~iWdl~~~~--~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~ 327 (1133)
+.+..+..- ..-.+++++++|+ + +++..++.+.++|.++.. +.+....... ..
T Consensus 69 -~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~--------------~~------- 125 (369)
T PF02239_consen 69 -KVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV--------------DG------- 125 (369)
T ss_dssp -SEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T--------------TT-------
T ss_pred -cEEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccc--------------cc-------
Confidence 334444433 3457899999999 4 455679999999998732 2221110000 00
Q ss_pred ccCCCCCe-EEEEecCCceEEEecC-CCceeEeecCCCceeE-EEecCCcceeEEEeCCCCCccccccceEEEEee-CCC
Q 043350 328 CSISSTEI-KCMLSDHARARVWCAQ-PLSFSLWDARSKELLK-VFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSS-NKK 403 (1133)
Q Consensus 328 ~~~~~~~~-~~l~S~d~~i~vwss~-d~~I~lWD~~tg~~l~-~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasg-s~D 403 (1133)
..+.. -+..+......+.+.. .+.|-+-|..+.+.+. .............|+|++++ ++.+ ..+
T Consensus 126 ---~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry---------~~va~~~s 193 (369)
T PF02239_consen 126 ---PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRY---------FLVAANGS 193 (369)
T ss_dssp ---S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSE---------EEEEEGGG
T ss_pred ---cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccce---------eeeccccc
Confidence 00000 0111112222222222 2455555666544333 23233445668899999987 5443 334
Q ss_pred Cccccccccccc--eee-----ccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeC-CCCeeEEE
Q 043350 404 EKPHGFLQRSRN--AIM-----GAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDG-NGNRVSDI 475 (1133)
Q Consensus 404 g~i~~~~~~~~~--~~~-----~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~-~g~~l~~~ 475 (1133)
+++-.++.+... ... .|..+...+ .+ ...++++...-... ..++.-....+.+|+. +.+.++++
T Consensus 194 n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-ph------p~~g~vw~~~~~~~-~~~~~ig~~~v~v~d~~~wkvv~~I 265 (369)
T PF02239_consen 194 NKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PH------PGFGPVWATSGLGY-FAIPLIGTDPVSVHDDYAWKVVKTI 265 (369)
T ss_dssp TEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EE------TTTEEEEEEEBSSS-SEEEEEE--TTT-STTTBTSEEEEE
T ss_pred ceeEEEeeccceEEEEeeccccccccccccc-cC------CCcceEEeeccccc-eecccccCCccccchhhcCeEEEEE
Confidence 444322211110 000 011111110 00 11122333322211 2222222335667777 55888888
Q ss_pred ecCCcceeE-EecCCCEEEEE----ecCCeEEEEeCCC-Ccceeeeccc-cCeEEeeec--ccceeeecccC--Ceeecc
Q 043350 476 LHHQCAVQC-FCTYGSRMYVG----YVSGYLQILDLDG-NLTASWIAHS-SPVLKLAVG--VDHIYSLAAHG--GIRGWT 544 (1133)
Q Consensus 476 ~~h~~~V~~-fs~dg~~Lasg----s~DG~I~vwd~~g-~~l~~~~~H~-~~V~~l~fs--~~~L~S~s~Dg--~I~lW~ 544 (1133)
.....++.. .+|++++|++. ...++|.|+|.+. +....+.... ..+..+.|+ |++++...+++ .|.++|
T Consensus 266 ~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 266 PTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp E-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEE
T ss_pred ECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEE
Confidence 887666655 89999999998 4568999999985 3444443322 358999999 77666555544 599999
Q ss_pred ccC
Q 043350 545 FTS 547 (1133)
Q Consensus 545 l~s 547 (1133)
..+
T Consensus 346 ~~T 348 (369)
T PF02239_consen 346 AKT 348 (369)
T ss_dssp TTT
T ss_pred CCC
Confidence 655
No 253
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.53 E-value=3.7e-06 Score=100.45 Aligned_cols=204 Identities=9% Similarity=0.078 Sum_probs=116.8
Q ss_pred eEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ec---CCcEEEeeCCCCCCcCcCCCccccCC
Q 043350 126 IFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQ---ECGVRFWNLEDSYEPGAGIGGRVRRG 199 (1133)
Q Consensus 126 ~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~---Dg~VrvWdl~~~~~~~~gh~~~v~~g 199 (1133)
.+.++|.+ +.. ...+..+.. .+.+.+ +|||+.++ +. ...|.+||+.+....
T Consensus 177 ~L~~~D~d----G~~-~~~l~~~~~-------~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~----------- 233 (427)
T PRK02889 177 QLQISDAD----GQN-AQSALSSPE-------PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR----------- 233 (427)
T ss_pred EEEEECCC----CCC-ceEeccCCC-------CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-----------
Confidence 45566665 544 344555555 677778 99999888 32 235999998763211
Q ss_pred CCCCCceeeccCCCCeEEEEEeCCCCEEE-EEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EE
Q 043350 200 DEDAAPFYESANTSPTMCLMVDCGNRLVW-TGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LW 277 (1133)
Q Consensus 200 ~~~~~~~~~~~h~s~V~~la~spd~~~La-Sgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~ 277 (1133)
......+.+.+.+|+|||+.|+ +.+.+|...||.++... .....+..|.+.+.+..|+|+|+ |+
T Consensus 234 -------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~-------~~~~~lt~~~~~~~~~~wSpDG~~l~ 299 (427)
T PRK02889 234 -------VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADG-------SGLRRLTQSSGIDTEPFFSPDGRSIY 299 (427)
T ss_pred -------EeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCC-------CCcEECCCCCCCCcCeEEcCCCCEEE
Confidence 1111123456789999998876 56788888888765311 22334455656667889999999 66
Q ss_pred EEeC-CCcEEEEeCC--CC-ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCC
Q 043350 278 SGGE-GGVIKIWPWE--SI-EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPL 353 (1133)
Q Consensus 278 Sgs~-DgtI~iWdl~--~~-~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~ 353 (1133)
..+. +|...||.++ +. ...+.+..... ......+++..++..+.. ....
T Consensus 300 f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~--------------------~~~~~SpDG~~Ia~~s~~-------~g~~ 352 (427)
T PRK02889 300 FTSDRGGAPQIYRMPASGGAAQRVTFTGSYN--------------------TSPRISPDGKLLAYISRV-------GGAF 352 (427)
T ss_pred EEecCCCCcEEEEEECCCCceEEEecCCCCc--------------------CceEECCCCCEEEEEEcc-------CCcE
Confidence 5554 5677777653 21 11111111000 001111333333333321 1223
Q ss_pred ceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCC
Q 043350 354 SFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKE 404 (1133)
Q Consensus 354 ~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg 404 (1133)
.|.+||+.+++....... .....+.|+|+++. |+.++.++
T Consensus 353 ~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~---------l~~~~~~~ 392 (427)
T PRK02889 353 KLYVQDLATGQVTALTDT--TRDESPSFAPNGRY---------ILYATQQG 392 (427)
T ss_pred EEEEEECCCCCeEEccCC--CCccCceECCCCCE---------EEEEEecC
Confidence 688999988775433222 23457899999998 66665544
No 254
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.52 E-value=7.2e-06 Score=98.22 Aligned_cols=195 Identities=11% Similarity=0.081 Sum_probs=112.9
Q ss_pred CeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--e---cCCcEEEeeCCCCCCcCcCCCccccC
Q 043350 125 GIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--G---QECGVRFWNLEDSYEPGAGIGGRVRR 198 (1133)
Q Consensus 125 g~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s---~Dg~VrvWdl~~~~~~~~gh~~~v~~ 198 (1133)
..|.+||.+ +.. ...+..|.. .+.+.+ +|||+.++ + .+..|.+||+.+....
T Consensus 184 ~~l~i~D~~----g~~-~~~lt~~~~-------~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~---------- 241 (433)
T PRK04922 184 YALQVADSD----GYN-PQTILRSAE-------PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE---------- 241 (433)
T ss_pred EEEEEECCC----CCC-ceEeecCCC-------ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE----------
Confidence 357888876 444 344555555 677777 99999888 3 2346999998763211
Q ss_pred CCCCCCceeeccCCCCeEEEEEeCCCCEEE-EEeCCC--eEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc
Q 043350 199 GDEDAAPFYESANTSPTMCLMVDCGNRLVW-TGHKDG--KIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD 275 (1133)
Q Consensus 199 g~~~~~~~~~~~h~s~V~~la~spd~~~La-Sgs~Dg--~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~ 275 (1133)
......+...+.+|+|+|+.|+ +.+.+| .|.+||+.+ .....+..|.......+|+|+|+
T Consensus 242 --------~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~---------g~~~~lt~~~~~~~~~~~spDG~ 304 (433)
T PRK04922 242 --------LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGS---------RQLTRLTNHFGIDTEPTWAPDGK 304 (433)
T ss_pred --------EeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCC---------CCeEECccCCCCccceEECCCCC
Confidence 1111122345789999998775 556665 588899876 33344555655667889999999
Q ss_pred -EEEEe-CCCc--EEEEeCCCC-ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEec
Q 043350 276 -LWSGG-EGGV--IKIWPWESI-EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCA 350 (1133)
Q Consensus 276 -L~Sgs-~Dgt--I~iWdl~~~-~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss 350 (1133)
|+.++ .+|. |.++++.+. ...+.+..... ......+++..+++.+.+ .
T Consensus 305 ~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~--------------------~~~~~SpDG~~Ia~~~~~-------~ 357 (433)
T PRK04922 305 SIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYN--------------------ARASVSPDGKKIAMVHGS-------G 357 (433)
T ss_pred EEEEEECCCCCceEEEEECCCCCeEEeecCCCCc--------------------cCEEECCCCCEEEEEECC-------C
Confidence 77665 4555 555555442 11221111000 001111333333333221 1
Q ss_pred CCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCc
Q 043350 351 QPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQ 387 (1133)
Q Consensus 351 ~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~ 387 (1133)
....|.+||+.+++.. .+. +........|+|++++
T Consensus 358 ~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~ 392 (433)
T PRK04922 358 GQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSM 392 (433)
T ss_pred CceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCE
Confidence 2346889999887755 333 2223456789999987
No 255
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.51 E-value=1.9e-06 Score=99.34 Aligned_cols=112 Identities=16% Similarity=0.170 Sum_probs=91.6
Q ss_pred cCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCC-Cc
Q 043350 436 VDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG-NL 510 (1133)
Q Consensus 436 ~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g-~~ 510 (1133)
..|.+.|.++..+.+- .|.+++.|+.+..|+. .++.++.+......+.+ ++|||+.|++|+ +.|++||++. +.
T Consensus 99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kev 176 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEV 176 (541)
T ss_pred CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceE
Confidence 4677888888877776 9999999999999999 56777777776666655 999999999886 7899999984 78
Q ss_pred ceeeeccccCeEEeeec-------ccceeee-cccCCeeeccccCCC
Q 043350 511 TASWIAHSSPVLKLAVG-------VDHIYSL-AAHGGIRGWTFTSPS 549 (1133)
Q Consensus 511 l~~~~~H~~~V~~l~fs-------~~~L~S~-s~Dg~I~lW~l~s~~ 549 (1133)
+..|.||.++|..++|. |.++++. ..+..+.+|-+....
T Consensus 177 v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~ 223 (541)
T KOG4547|consen 177 VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKED 223 (541)
T ss_pred EEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEccc
Confidence 89999999999999987 4666654 556678899876643
No 256
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.50 E-value=9.3e-06 Score=97.36 Aligned_cols=194 Identities=9% Similarity=0.053 Sum_probs=115.3
Q ss_pred eEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--e---cCCcEEEeeCCCCCCcCcCCCccccCC
Q 043350 126 IFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--G---QECGVRFWNLEDSYEPGAGIGGRVRRG 199 (1133)
Q Consensus 126 ~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s---~Dg~VrvWdl~~~~~~~~gh~~~v~~g 199 (1133)
.|.+||.+ +.. ...+..|.. .+.... +|||+.|+ + .+..|.+||+.+....
T Consensus 183 ~l~~~d~d----g~~-~~~lt~~~~-------~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~----------- 239 (435)
T PRK05137 183 RLAIMDQD----GAN-VRYLTDGSS-------LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE----------- 239 (435)
T ss_pred EEEEECCC----CCC-cEEEecCCC-------CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-----------
Confidence 56777766 555 455666766 788888 99999888 3 2468999998763211
Q ss_pred CCCCCceeeccCCCCeEEEEEeCCCCEEE-EEeCCCe--EEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-
Q 043350 200 DEDAAPFYESANTSPTMCLMVDCGNRLVW-TGHKDGK--IRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD- 275 (1133)
Q Consensus 200 ~~~~~~~~~~~h~s~V~~la~spd~~~La-Sgs~Dg~--V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~- 275 (1133)
....+.+.+.+.+|+|||+.|+ +.+.++. |.+||+.+ .....+..|........|+|+|+
T Consensus 240 -------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~---------~~~~~Lt~~~~~~~~~~~spDG~~ 303 (435)
T PRK05137 240 -------LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS---------GTTTRLTDSPAIDTSPSYSPDGSQ 303 (435)
T ss_pred -------EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC---------CceEEccCCCCccCceeEcCCCCE
Confidence 1222334567789999998765 5666665 66667766 33344555666678899999999
Q ss_pred EEEEeC-CC--cEEEEeCCCC-ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecC
Q 043350 276 LWSGGE-GG--VIKIWPWESI-EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQ 351 (1133)
Q Consensus 276 L~Sgs~-Dg--tI~iWdl~~~-~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~ 351 (1133)
|+..+. +| .|.+||+.+. ...+....... ......+++..+++.+.+ ..
T Consensus 304 i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~--------------------~~~~~SpdG~~ia~~~~~-------~~ 356 (435)
T PRK05137 304 IVFESDRSGSPQLYVMNADGSNPRRISFGGGRY--------------------STPVWSPRGDLIAFTKQG-------GG 356 (435)
T ss_pred EEEEECCCCCCeEEEEECCCCCeEEeecCCCcc--------------------cCeEECCCCCEEEEEEcC-------CC
Confidence 776663 33 5777776652 22222111000 011111333333333321 12
Q ss_pred CCceeEeecCCCceeEEEecCCcceeEEEeCCCCCc
Q 043350 352 PLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQ 387 (1133)
Q Consensus 352 d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~ 387 (1133)
+..|.+||+..+. .+.+.. ...+..+.|+|+++.
T Consensus 357 ~~~i~~~d~~~~~-~~~lt~-~~~~~~p~~spDG~~ 390 (435)
T PRK05137 357 QFSIGVMKPDGSG-ERILTS-GFLVEGPTWAPNGRV 390 (435)
T ss_pred ceEEEEEECCCCc-eEeccC-CCCCCCCeECCCCCE
Confidence 2457778875443 333332 224667899999987
No 257
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.50 E-value=2.6e-05 Score=90.66 Aligned_cols=294 Identities=15% Similarity=0.101 Sum_probs=155.4
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE---ecCCcEEEeeCCC
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA---GQECGVRFWNLED 184 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla---s~Dg~VrvWdl~~ 184 (1133)
..|+|||+++..++.||.|.++|+.+ .+. +.+++. |....+++ ++||++++ ...+.+.++|.++
T Consensus 42 ~~~s~Dgr~~yv~~rdg~vsviD~~~---~~~-v~~i~~--------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t 109 (369)
T PF02239_consen 42 LKFSPDGRYLYVANRDGTVSVIDLAT---GKV-VATIKV--------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAET 109 (369)
T ss_dssp EE-TT-SSEEEEEETTSEEEEEETTS---SSE-EEEEE---------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT
T ss_pred EEecCCCCEEEEEcCCCeEEEEECCc---ccE-EEEEec--------CCCcceEEEcCCCCEEEEEecCCCceeEecccc
Confidence 45799999999999999999999984 333 555543 33567888 99999888 4689999999887
Q ss_pred CC--CcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCC-CeEEEEeCCCCCCCCCCCcccccccccC
Q 043350 185 SY--EPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKD-GKIRSWKMDQTLDDANNPFKEGLSWQAH 261 (1133)
Q Consensus 185 ~~--~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~D-g~V~vWd~~~~~~~~~~~~~~~~~l~gH 261 (1133)
+. +...... .......+.+..+..+|....++..-.| +.|.+-|..... ........-
T Consensus 110 le~v~~I~~~~------------~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~-------~~~~~~i~~ 170 (369)
T PF02239_consen 110 LEPVKTIPTGG------------MPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK-------NLKVTTIKV 170 (369)
T ss_dssp --EEEEEE--E------------E-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS-------CEEEEEEE-
T ss_pred ccceeeccccc------------ccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc-------ccceeeecc
Confidence 32 1111100 0001134467788888888866666665 777777765411 111122223
Q ss_pred CCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceeeEeC----CCCceEEEEeecceEEEccCceeeeccccCCCCCe
Q 043350 262 RGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSLSLK----PEEKHMAALLVERSFIDLRAQVTVNGACSISSTEI 335 (1133)
Q Consensus 262 ~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l~~~----~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~ 335 (1133)
........|+|+++ +++...+..|-++|..+........ ++....+- . .|+....
T Consensus 171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~------~-------------php~~g~ 231 (369)
T PF02239_consen 171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGAN------F-------------PHPGFGP 231 (369)
T ss_dssp -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEE------E-------------EETTTEE
T ss_pred cccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccccccccc------c-------------cCCCcce
Confidence 44566789999999 4555677899999987642221111 11000000 0 0011111
Q ss_pred EEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEee----CCCCccccccc
Q 043350 336 KCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSS----NKKEKPHGFLQ 411 (1133)
Q Consensus 336 ~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasg----s~Dg~i~~~~~ 411 (1133)
.....+.+...+-......+.+||..+.+.++.+...+.. .-+..+|++++ ++.. ...++|..++.
T Consensus 232 vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~---------vwvd~~~~~~~~~v~viD~ 301 (369)
T PF02239_consen 232 VWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRY---------VWVDTFLNPDADTVQVIDK 301 (369)
T ss_dssp EEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SE---------EEEE-TT-SSHT-EEEEEC
T ss_pred EEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCcc---------EEeeccCCCCCceEEEEEC
Confidence 1111111222212233557778999999999999988877 67888999998 7766 23344433333
Q ss_pred cccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEec--CCeEEEEeCC-CCeeEEEe
Q 043350 412 RSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCT--NGLLVQWDGN-GNRVSDIL 476 (1133)
Q Consensus 412 ~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~--DG~I~vWd~~-g~~l~~~~ 476 (1133)
+..... ..+. .+...++..+.|+++| .++.+.. +|.|.+||.. .+.+..+.
T Consensus 302 ~tl~~~-------~~i~-------~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 302 KTLKVV-------KTIT-------PGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp CGTEEE-------E-HH-------HHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred cCccee-------EEEe-------ccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 222111 1110 1112237778889999 5554443 3379999994 46666665
No 258
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.49 E-value=7.6e-07 Score=103.66 Aligned_cols=276 Identities=13% Similarity=0.177 Sum_probs=155.5
Q ss_pred eEEEEE-eCCCCeEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCC--eEEEEEeCC---CCEEEEE
Q 043350 158 FLRNIA-CTDTQLWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSP--TMCLMVDCG---NRLVWTG 230 (1133)
Q Consensus 158 ~V~~v~-s~dg~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~--V~~la~spd---~~~LaSg 230 (1133)
++.++. +|.|.-+| .....+.+-|++.... +..+-.|..| |-.+.|++. ...+++-
T Consensus 26 ~~~a~si~p~grdi~lAsr~gl~i~dld~p~~-----------------ppr~l~h~tpw~vad~qws~h~a~~~wiVst 88 (1081)
T KOG0309|consen 26 GFNAVSINPSGRDIVLASRQGLYIIDLDDPFT-----------------PPRWLHHITPWQVADVQWSPHPAKPYWIVST 88 (1081)
T ss_pred cccceeeccccchhhhhhhcCeEEEeccCCCC-----------------CceeeeccCcchhcceecccCCCCceeEEec
Confidence 445555 66565555 4445566667776433 2223333322 455666663 2344444
Q ss_pred eCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEE
Q 043350 231 HKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAA 308 (1133)
Q Consensus 231 s~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s 308 (1133)
+ ...-.+|++..... + ..-..+.||...|+.+.|.|+.. |++|+.|-.+..||++..-..+.....-..
T Consensus 89 s-~qkaiiwnlA~ss~---~--aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s--- 159 (1081)
T KOG0309|consen 89 S-NQKAIIWNLAKSSS---N--AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS--- 159 (1081)
T ss_pred C-cchhhhhhhhcCCc---c--ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccc---
Confidence 4 35567899865211 1 23346789999999999999877 999999999999999863222211100000
Q ss_pred EeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCC-ceeEEEecCCcceeEEEeCCCCCc
Q 043350 309 LLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSK-ELLKVFNIEGHIENRVDTQSVQDQ 387 (1133)
Q Consensus 309 ~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg-~~l~~~~~h~~~v~~l~~sp~g~~ 387 (1133)
..+.+.++ -.+..++++ +....|.+||++.| .++..+++|...|+.++|..-.
T Consensus 160 ---~asqVkwn------------yk~p~vlas---------shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~-- 213 (1081)
T KOG0309|consen 160 ---AASQVKWN------------YKDPNVLAS---------SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFK-- 213 (1081)
T ss_pred ---cCceeeec------------ccCcchhhh---------ccCCceEEEeccCCCcceEEecccceeeehHHHhhhh--
Confidence 00011110 011112222 34567888988855 4555666655555444443210
Q ss_pred cccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeC
Q 043350 388 PVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDG 467 (1133)
Q Consensus 388 ~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~ 467 (1133)
.+.+++.+.||+|+.||.
T Consensus 214 --------------------------------------------------------------~s~~~s~~~d~tvkfw~y 231 (1081)
T KOG0309|consen 214 --------------------------------------------------------------YSEIMSSSNDGTVKFWDY 231 (1081)
T ss_pred --------------------------------------------------------------hhhhcccCCCCceeeecc
Confidence 013667778888888887
Q ss_pred CC--CeeEEEecCCcceeE--EecCCCEEEEEe--cCCeEEEEe---------CC--CCcceeeeccccCeEEeeec---
Q 043350 468 NG--NRVSDILHHQCAVQC--FCTYGSRMYVGY--VSGYLQILD---------LD--GNLTASWIAHSSPVLKLAVG--- 527 (1133)
Q Consensus 468 ~g--~~l~~~~~h~~~V~~--fs~dg~~Lasgs--~DG~I~vwd---------~~--g~~l~~~~~H~~~V~~l~fs--- 527 (1133)
+. +.-........+|+- +-|.|+-..+-- .+..|.+++ +. ..++..|.||++.|....|-
T Consensus 232 ~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~ 311 (1081)
T KOG0309|consen 232 SKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRK 311 (1081)
T ss_pred cccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcc
Confidence 32 222222223444543 666665222111 122444443 22 14688999999999887775
Q ss_pred ---------ccceeeecccCCeeeccccC
Q 043350 528 ---------VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 528 ---------~~~L~S~s~Dg~I~lW~l~s 547 (1133)
.-.|+|-|.|..+|+|.+.+
T Consensus 312 e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 312 ECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cccCCCCccceeEEEeecCCceEeeeccH
Confidence 12599999999999999864
No 259
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.48 E-value=1.2e-07 Score=105.34 Aligned_cols=162 Identities=13% Similarity=0.188 Sum_probs=124.0
Q ss_pred eEEEeCCCCCccccccceEEEEeeCCCCccc--cccccccceeeccCCceEEEEEecCCc--------------------
Q 043350 377 NRVDTQSVQDQPVEDEMKVKFVSSNKKEKPH--GFLQRSRNAIMGAADAVRRVATRGAGA-------------------- 434 (1133)
Q Consensus 377 ~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~--~~~~~~~~~~~~~~~~V~~v~~~p~g~-------------------- 434 (1133)
..+.++.+|.. ++.|+..|.+- +|....+..-..-...|..+.|-.+.+
T Consensus 133 Y~~~ytrnGrh---------lllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtEl 203 (545)
T KOG1272|consen 133 YHLDYTRNGRH---------LLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTEL 203 (545)
T ss_pred eeeeecCCccE---------EEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEE
Confidence 47888999999 99999999988 444433332222223344443332221
Q ss_pred -ccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCccee--EEecCCCEEEEEecCCeEEEEeCCC-
Q 043350 435 -FVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQ--CFCTYGSRMYVGYVSGYLQILDLDG- 508 (1133)
Q Consensus 435 -~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~--~fs~dg~~Lasgs~DG~I~vwd~~g- 508 (1133)
.......|..+.|-|.. +|++++..|.++.-|. .|+.+..+....+.+. +-.|-+..+-+|...|+|.+|.-..
T Consensus 204 HClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 204 HCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred eehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 11223467788899999 8999999999999999 6788888776555444 4778888999999999999999874
Q ss_pred CcceeeeccccCeEEeeec--ccceeeecccCCeeeccccC
Q 043350 509 NLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 509 ~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s 547 (1133)
+++..+..|.++|.+++++ |.|++|.|.|..++|||+..
T Consensus 284 ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 284 EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRN 324 (545)
T ss_pred chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecc
Confidence 6888899999999999999 99999999999999999754
No 260
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.47 E-value=8.5e-05 Score=84.38 Aligned_cols=293 Identities=12% Similarity=0.108 Sum_probs=161.7
Q ss_pred eEEEEE-eCCCCeEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCe
Q 043350 158 FLRNIA-CTDTQLWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGK 235 (1133)
Q Consensus 158 ~V~~v~-s~dg~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~ 235 (1133)
++..+. ||.|.+|+ ..-..|.+|.-...... .......|.-+.|+|.+++|.|-+..+.
T Consensus 34 p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l-------------------~~~~~~~V~~~~fSP~~kYL~tw~~~pi 94 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAAGVECWGGPSKAKL-------------------VRFRHPDVKYLDFSPNEKYLVTWSREPI 94 (561)
T ss_pred chhheeecCcchheehhhccceEEccccchhhe-------------------eeeecCCceecccCcccceeeeeccCCc
Confidence 566667 99999999 66778999986652111 1112235778888889999999776544
Q ss_pred ---------------EEEEeCCCCCCCCCCCcccccccccCCCC--eE-EEEEeeCCc-EEEEeCCCcEEEEeCCCCcee
Q 043350 236 ---------------IRSWKMDQTLDDANNPFKEGLSWQAHRGP--VL-AMIFSSQGD-LWSGGEGGVIKIWPWESIEKS 296 (1133)
Q Consensus 236 ---------------V~vWd~~~~~~~~~~~~~~~~~l~gH~~~--V~-sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~ 296 (1133)
+.+||..++ ..+..+.+-..+ .+ -+.|+-+.. ++-- -...+.|+++......
T Consensus 95 ~~pe~e~sp~~~~n~~~vwd~~sg--------~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~ 165 (561)
T COG5354 95 IEPEIEISPFTSKNNVFVWDIASG--------MIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEE 165 (561)
T ss_pred cChhhccCCccccCceeEEeccCc--------eeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCcccc
Confidence 889998762 223344444333 44 567887766 3222 3345888886321110
Q ss_pred e---EeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEe----cCCCceeEeecCCCceeEEE
Q 043350 297 L---SLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWC----AQPLSFSLWDARSKELLKVF 369 (1133)
Q Consensus 297 l---~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vws----s~d~~I~lWD~~tg~~l~~~ 369 (1133)
. .+.+.+.. -+.+. +....+. +..|. ..++.+++|.+..+..+.+-
T Consensus 166 ~p~~~lr~~gi~---------dFsis---------P~~n~~~---------la~~tPEk~~kpa~~~i~sIp~~s~l~tk 218 (561)
T COG5354 166 HPFKNLRPVGIL---------DFSIS---------PEGNHDE---------LAYWTPEKLNKPAMVRILSIPKNSVLVTK 218 (561)
T ss_pred Cchhhcccccee---------eEEec---------CCCCCce---------EEEEccccCCCCcEEEEEEccCCCeeeee
Confidence 0 01111111 11111 1001111 12222 45678888888866665433
Q ss_pred ecCCcceeEEEeCCCCCccccccceEEEEeeCCCCcc-------c--cccccccceeeccCCceEEEEEecCCc------
Q 043350 370 NIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKP-------H--GFLQRSRNAIMGAADAVRRVATRGAGA------ 434 (1133)
Q Consensus 370 ~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i-------~--~~~~~~~~~~~~~~~~V~~v~~~p~g~------ 434 (1133)
..-.-.-..+.|.+.|.+ ..+.+.+-...++- + .+.++......+..++|...+|.|.+.
T Consensus 219 ~lfk~~~~qLkW~~~g~~-----ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 219 NLFKVSGVQLKWQVLGKY-----LLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred eeEeecccEEEEecCCce-----EEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEe
Confidence 222222235677777765 11101111111111 1 233444444445567788888877654
Q ss_pred -----------------ccCCCCCEEEEEECCCC-eEEEEec---CCeEEEEeCCC--CeeEEEecCCcceeEEecCCCE
Q 043350 435 -----------------FVDDTKRTEAMVLTADG-MIWSGCT---NGLLVQWDGNG--NRVSDILHHQCAVQCFCTYGSR 491 (1133)
Q Consensus 435 -----------------~~~h~~~V~sl~~spdg-~L~sgs~---DG~I~vWd~~g--~~l~~~~~h~~~V~~fs~dg~~ 491 (1133)
+......=..+.|+|.+ +++.++- -|.|.+||..| .++..+.+.......|+|||++
T Consensus 294 g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF 373 (561)
T COG5354 294 GYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQF 373 (561)
T ss_pred cccccceeecccccceEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceE
Confidence 11122223446678888 6666544 36788888855 3444666655554448899887
Q ss_pred EEEEe------cCCeEEEEeCCCCc
Q 043350 492 MYVGY------VSGYLQILDLDGNL 510 (1133)
Q Consensus 492 Lasgs------~DG~I~vwd~~g~~ 510 (1133)
+.+.. .|..|+|||+.|..
T Consensus 374 ~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 374 YDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred EEecCCCcccccCcceEEEEecCch
Confidence 77665 47788889888754
No 261
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.44 E-value=2.8e-05 Score=93.35 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=50.8
Q ss_pred EEEECCCC-eEEEEec-CCe--EEEEeCCCCeeEEEecCCcc-eeEEecCCCEEEEEecC-C--eEEEEeCCCCcceeee
Q 043350 444 AMVLTADG-MIWSGCT-NGL--LVQWDGNGNRVSDILHHQCA-VQCFCTYGSRMYVGYVS-G--YLQILDLDGNLTASWI 515 (1133)
Q Consensus 444 sl~~spdg-~L~sgs~-DG~--I~vWd~~g~~l~~~~~h~~~-V~~fs~dg~~Lasgs~D-G--~I~vwd~~g~~l~~~~ 515 (1133)
...++||| .|+..+. ++. |.++|+.+..+..+...... --+|+|+|++|+..+.+ | .+++++.+|.....+.
T Consensus 354 ~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~ 433 (448)
T PRK04792 354 GGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLP 433 (448)
T ss_pred CeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 35789999 6655443 443 55567755434444332111 11499999988776643 3 4788888887766666
Q ss_pred ccccCeEEeeec
Q 043350 516 AHSSPVLKLAVG 527 (1133)
Q Consensus 516 ~H~~~V~~l~fs 527 (1133)
.+.+.+...+|+
T Consensus 434 ~~~g~~~~p~Ws 445 (448)
T PRK04792 434 AGQGEVKSPAWS 445 (448)
T ss_pred CCCCCcCCCccC
Confidence 665555555554
No 262
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.43 E-value=3.5e-05 Score=92.31 Aligned_cols=215 Identities=14% Similarity=0.101 Sum_probs=116.6
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCC---CeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EE-EEeCCCc
Q 043350 210 ANTSPTMCLMVDCGNRLVWTGHKD---GKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LW-SGGEGGV 284 (1133)
Q Consensus 210 ~h~s~V~~la~spd~~~LaSgs~D---g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~-Sgs~Dgt 284 (1133)
.+..++....|+|||+.|+..+.+ ..|.+|++.++.. +. +....+.+...+|+|+|+ |+ +.+.+|.
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~------~~---l~~~~g~~~~~~~SpDG~~la~~~~~~g~ 266 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR------EQ---ITNFEGLNGAPAWSPDGSKLAFVLSKDGN 266 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE------EE---ccCCCCCcCCeEECCCCCEEEEEEccCCC
Confidence 345578899999999998776644 3688899876222 22 222233455789999998 55 5555543
Q ss_pred --EEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCC
Q 043350 285 --IKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARS 362 (1133)
Q Consensus 285 --I~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~t 362 (1133)
|.+||+.+
T Consensus 267 ~~Iy~~d~~~---------------------------------------------------------------------- 276 (430)
T PRK00178 267 PEIYVMDLAS---------------------------------------------------------------------- 276 (430)
T ss_pred ceEEEEECCC----------------------------------------------------------------------
Confidence 44444432
Q ss_pred CceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCC-CCccccccccccceeeccCCceEEEEEecCCcccCCCCC
Q 043350 363 KELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNK-KEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKR 441 (1133)
Q Consensus 363 g~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~-Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~ 441 (1133)
++.. .+..+........|+|+++. ++..+. ++....+ .+....+.+..+.+. + ..
T Consensus 277 ~~~~-~lt~~~~~~~~~~~spDg~~---------i~f~s~~~g~~~iy------~~d~~~g~~~~lt~~--~------~~ 332 (430)
T PRK00178 277 RQLS-RVTNHPAIDTEPFWGKDGRT---------LYFTSDRGGKPQIY------KVNVNGGRAERVTFV--G------NY 332 (430)
T ss_pred CCeE-EcccCCCCcCCeEECCCCCE---------EEEEECCCCCceEE------EEECCCCCEEEeecC--C------CC
Confidence 2111 11112222344577888776 544432 2221100 011111222333222 1 11
Q ss_pred EEEEEECCCC-eEEEEec-CC--eEEEEeCCCCeeEEEecC-CcceeEEecCCCEEEEEecC---CeEEEEeCCCCccee
Q 043350 442 TEAMVLTADG-MIWSGCT-NG--LLVQWDGNGNRVSDILHH-QCAVQCFCTYGSRMYVGYVS---GYLQILDLDGNLTAS 513 (1133)
Q Consensus 442 V~sl~~spdg-~L~sgs~-DG--~I~vWd~~g~~l~~~~~h-~~~V~~fs~dg~~Lasgs~D---G~I~vwd~~g~~l~~ 513 (1133)
.....++|+| .|+..+. ++ .|.+||+.+.....+... ...-.+|+|+|++|+..+.+ ..|+++++.|.....
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~ 412 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLP 412 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEE
Confidence 2345689999 6655543 33 478889855333433321 11112499999988876643 357888888766555
Q ss_pred eeccccCeEEeeec
Q 043350 514 WIAHSSPVLKLAVG 527 (1133)
Q Consensus 514 ~~~H~~~V~~l~fs 527 (1133)
+..+.+.+...+|+
T Consensus 413 l~~~~g~~~~p~ws 426 (430)
T PRK00178 413 LPTAQGEVREPSWS 426 (430)
T ss_pred CcCCCCCcCCCccC
Confidence 55555555555554
No 263
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=9.7e-07 Score=99.32 Aligned_cols=281 Identities=13% Similarity=0.109 Sum_probs=167.9
Q ss_pred ccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEE
Q 043350 209 SANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKI 287 (1133)
Q Consensus 209 ~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~i 287 (1133)
.+|...|..++.-.+.+-+++++.|++|++|.+...... .....+..++++|+.+|.++-|..+-+ ++| .||.|.+
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~-~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHl 808 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE-IGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHL 808 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc-cccceeeeEhhhccCcccceeeeeccceeee--ccCccee
Confidence 456566666665556778899999999999999753321 111235568899999999999998877 664 5899999
Q ss_pred EeCCCC--ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCC-CCeEEEEecCCceEEEecCCCceeEeecCCCc
Q 043350 288 WPWESI--EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISS-TEIKCMLSDHARARVWCAQPLSFSLWDARSKE 364 (1133)
Q Consensus 288 Wdl~~~--~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~-~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~ 364 (1133)
||.--+ ...+...+... ....+...++ ...++++.+ +...+|+++|.+.++
T Consensus 809 WDPFigr~Laq~~dapk~~------------------a~~~ikcl~nv~~~iliAgc--------saeSTVKl~DaRsce 862 (1034)
T KOG4190|consen 809 WDPFIGRLLAQMEDAPKEG------------------AGGNIKCLENVDRHILIAGC--------SAESTVKLFDARSCE 862 (1034)
T ss_pred ecccccchhHhhhcCcccC------------------CCceeEecccCcchheeeec--------cchhhheeeeccccc
Confidence 996321 11011111110 0000001111 122333333 668899999999988
Q ss_pred eeEEEecC-----CcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCC
Q 043350 365 LLKVFNIE-----GHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDT 439 (1133)
Q Consensus 365 ~l~~~~~h-----~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~ 439 (1133)
....++.. ...+.+++..+.|.. ++.+-..|++..++.+...++. .|.|- .
T Consensus 863 ~~~E~kVcna~~Pna~~R~iaVa~~GN~---------lAa~LSnGci~~LDaR~G~vIN---------swrpm------e 918 (1034)
T KOG4190|consen 863 WTCELKVCNAPGPNALTRAIAVADKGNK---------LAAALSNGCIAILDARNGKVIN---------SWRPM------E 918 (1034)
T ss_pred ceeeEEeccCCCCchheeEEEeccCcch---------hhHHhcCCcEEEEecCCCceec---------cCCcc------c
Confidence 77666443 345779999999999 9999889988644444222211 01110 0
Q ss_pred CCEEEEEECCCCeEEEEecCCeEEE-EeC-CCCeeEEEecCCcceeEEecCCCEEEEEecCCeEEEEeCCCCc-----ce
Q 043350 440 KRTEAMVLTADGMIWSGCTNGLLVQ-WDG-NGNRVSDILHHQCAVQCFCTYGSRMYVGYVSGYLQILDLDGNL-----TA 512 (1133)
Q Consensus 440 ~~V~sl~~spdg~L~sgs~DG~I~v-Wd~-~g~~l~~~~~h~~~V~~fs~dg~~Lasgs~DG~I~vwd~~g~~-----l~ 512 (1133)
.....++--.|..|+....|.++.+ |.. +|....+.+....+..-+...|.-|+++.....+.||--.+.+ +.
T Consensus 919 cdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stit 998 (1034)
T KOG4190|consen 919 CDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTIT 998 (1034)
T ss_pred chhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhc
Confidence 0111121112236777778888888 876 6644444443333333355567778888877888888754321 22
Q ss_pred eeec--cccCeEEeeec--ccceeeecccCCeee
Q 043350 513 SWIA--HSSPVLKLAVG--VDHIYSLAAHGGIRG 542 (1133)
Q Consensus 513 ~~~~--H~~~V~~l~fs--~~~L~S~s~Dg~I~l 542 (1133)
.++. ..+..++++.- +.-++.+...|.|.+
T Consensus 999 KiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 999 KIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred cccccccCCccceeeeccccchhhccCCCCceee
Confidence 2222 23556666665 555667788887765
No 264
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.38 E-value=2e-06 Score=108.89 Aligned_cols=246 Identities=11% Similarity=0.121 Sum_probs=148.9
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCC
Q 043350 223 GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKP 301 (1133)
Q Consensus 223 d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~ 301 (1133)
.++.......+++..-|..+++.. .++.|-..|.++.-+|... -+||+.||.|++|.+..+...+.+..
T Consensus 2179 ~s~~~~~~n~~~~~~tq~~~~~~~----------~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt 2248 (2439)
T KOG1064|consen 2179 FSNRFTPSNLPWLGSTQTSRGASV----------MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT 2248 (2439)
T ss_pred ccccCCcccCCccccceeccccee----------EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec
Confidence 344555555566666666654111 3344556777887778777 99999999999999865433333322
Q ss_pred CCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEe
Q 043350 302 EEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDT 381 (1133)
Q Consensus 302 ~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~ 381 (1133)
.+. ..+....+...++..-++- .||.+.+|.+. .++....+.|....+.+.|
T Consensus 2249 ~g~-----------------s~vtr~~f~~qGnk~~i~d----------~dg~l~l~q~~-pk~~~s~qchnk~~~Df~F 2300 (2439)
T KOG1064|consen 2249 AGN-----------------SRVTRSRFNHQGNKFGIVD----------GDGDLSLWQAS-PKPYTSWQCHNKALSDFRF 2300 (2439)
T ss_pred cCc-----------------chhhhhhhcccCCceeeec----------cCCceeecccC-CcceeccccCCccccceee
Confidence 221 1122222222333333343 45666666554 5566666777777777776
Q ss_pred CCCCCccccccceEEEEeeCC---CCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEe
Q 043350 382 QSVQDQPVEDEMKVKFVSSNK---KEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGC 457 (1133)
Q Consensus 382 sp~g~~~~e~e~~v~lasgs~---Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs 457 (1133)
-. .. +++++. ++.+..|+.. ..+.. +.+ + ..|.+.++++++.|.. .|++|+
T Consensus 2301 i~--s~---------~~tag~s~d~~n~~lwDtl-----~~~~~--s~v--~-----~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2301 IG--SL---------LATAGRSSDNRNVCLWDTL-----LPPMN--SLV--H-----TCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred ee--hh---------hhccccCCCCCcccchhcc-----cCccc--cee--e-----eecCCCceEEEEcCcceEEEecC
Confidence 55 23 444432 2333344432 11110 011 1 4678889999999999 999999
Q ss_pred cCCeEEEEeCC-CCeeEEEecCCcceeEEecCCCEEEEEecCCeEEEEeCCC-Ccceeeec---ccc--Ce--EEeeec-
Q 043350 458 TNGLLVQWDGN-GNRVSDILHHQCAVQCFCTYGSRMYVGYVSGYLQILDLDG-NLTASWIA---HSS--PV--LKLAVG- 527 (1133)
Q Consensus 458 ~DG~I~vWd~~-g~~l~~~~~h~~~V~~fs~dg~~Lasgs~DG~I~vwd~~g-~~l~~~~~---H~~--~V--~~l~fs- 527 (1133)
.+|.|++||+. .+..+.++. +. ...++++|+..|.|+||++.+ .++.++.. |.+ .+ ..+-+.
T Consensus 2356 r~G~v~l~D~rqrql~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~ 2427 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQ 2427 (2439)
T ss_pred CcCcEEEeehHHHHHHHHhhh-------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeecc
Confidence 99999999994 455555543 22 456899999999999999985 44544432 222 12 223333
Q ss_pred ccceeeecccCC
Q 043350 528 VDHIYSLAAHGG 539 (1133)
Q Consensus 528 ~~~L~S~s~Dg~ 539 (1133)
..+|++|+.||+
T Consensus 2428 ~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2428 CNRIFSCGADGT 2439 (2439)
T ss_pred CceEEEecCCCC
Confidence 788999999984
No 265
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.34 E-value=5.3e-06 Score=91.69 Aligned_cols=155 Identities=14% Similarity=0.038 Sum_probs=101.3
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEEeCCCCeEE---ecCCcEEEeeCCCC
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIACTDTQLWA---GQECGVRFWNLEDS 185 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~s~dg~lla---s~Dg~VrvWdl~~~ 185 (1133)
+.++|.+++||.+..+....+.+.....++..+......... ...++.+.....-+++ +....+.+|.....
T Consensus 68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~-----~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKR-----PTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccC-----cceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 556899999999988887777776522221111111111111 0133333311222223 55556666665531
Q ss_pred CCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCe
Q 043350 186 YEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPV 265 (1133)
Q Consensus 186 ~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V 265 (1133)
. .....+|.+-++.++|+||++.|+|+.+|..|||-..... +.--.-+.||+.-|
T Consensus 143 ~------------------~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~-------f~IesfclGH~eFV 197 (390)
T KOG3914|consen 143 R------------------CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT-------FVIESFCLGHKEFV 197 (390)
T ss_pred C------------------cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc-------cchhhhccccHhhe
Confidence 0 1234588899999999999999999999999999887651 11112346899999
Q ss_pred EEEEEeeCCcEEEEeCCCcEEEEeCCCC
Q 043350 266 LAMIFSSQGDLWSGGEGGVIKIWPWESI 293 (1133)
Q Consensus 266 ~sl~fsp~g~L~Sgs~DgtI~iWdl~~~ 293 (1133)
..++..++..|+|||.|++|++||+.++
T Consensus 198 S~isl~~~~~LlS~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 198 STISLTDNYLLLSGSGDKTLRLWDITSG 225 (390)
T ss_pred eeeeeccCceeeecCCCCcEEEEecccC
Confidence 9999976544999999999999999873
No 266
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.34 E-value=9.6e-05 Score=86.91 Aligned_cols=298 Identities=14% Similarity=0.124 Sum_probs=157.4
Q ss_pred CCCeEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q 043350 166 DTQLWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQT 244 (1133)
Q Consensus 166 dg~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~ 244 (1133)
++.+++ +.++.|..+|..+....+.-.- + .....++ +. ++..++.++.||.+..+|...+
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~-----~--------~~~~~~p----~v--~~~~v~v~~~~g~l~ald~~tG 125 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDL-----D--------ERLSGGV----GA--DGGLVFVGTEKGEVIALDAEDG 125 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecC-----C--------CCcccce----EE--cCCEEEEEcCCCEEEEEECCCC
Confidence 556666 6778888888766433221100 0 0001111 11 4677888899999999998652
Q ss_pred CCCCCCCcccccccccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceee
Q 043350 245 LDDANNPFKEGLSWQAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTV 324 (1133)
Q Consensus 245 ~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v 324 (1133)
.. +..... .+.+.+.-...++.++.++.+|.|..||..++............ +...
T Consensus 126 ~~--------~W~~~~-~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~----------~~~~----- 181 (377)
T TIGR03300 126 KE--------LWRAKL-SSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPA----------LTLR----- 181 (377)
T ss_pred cE--------eeeecc-CceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCc----------eeec-----
Confidence 21 111111 12222211112344777788999999998765333222111110 0000
Q ss_pred eccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCc----ce---eEEEeCC--CCCccccccceE
Q 043350 325 NGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGH----IE---NRVDTQS--VQDQPVEDEMKV 395 (1133)
Q Consensus 325 ~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~----~v---~~l~~sp--~g~~~~e~e~~v 395 (1133)
.. ..+ .+. ++ ..+....++.+..+|+.+|+.+........ .+ ..+.-+| .+..
T Consensus 182 -~~---~sp----~~~-~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~-------- 243 (377)
T TIGR03300 182 -GS---ASP----VIA-DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQ-------- 243 (377)
T ss_pred -CC---CCC----EEE-CC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCE--------
Confidence 00 000 000 11 112224567788888888876654332110 00 0011111 1223
Q ss_pred EEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeC-CCCeeEE
Q 043350 396 KFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDG-NGNRVSD 474 (1133)
Q Consensus 396 ~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~-~g~~l~~ 474 (1133)
+..++.++.+..++.... ..+|..... .. ..... .++.++.++.||.|..+|. +|+.+..
T Consensus 244 -vy~~~~~g~l~a~d~~tG-------~~~W~~~~~------~~----~~p~~-~~~~vyv~~~~G~l~~~d~~tG~~~W~ 304 (377)
T TIGR03300 244 -VYAVSYQGRVAALDLRSG-------RVLWKRDAS------SY----QGPAV-DDNRLYVTDADGVVVALDRRSGSELWK 304 (377)
T ss_pred -EEEEEcCCEEEEEECCCC-------cEEEeeccC------Cc----cCceE-eCCEEEEECCCCeEEEEECCCCcEEEc
Confidence 556666776653332211 112222111 00 11111 2347888889999999999 6777766
Q ss_pred EecCCcce-eEEecCCCEEEEEecCCeEEEEeCC-CCcceeeeccccCeE-EeeecccceeeecccCCeeec
Q 043350 475 ILHHQCAV-QCFCTYGSRMYVGYVSGYLQILDLD-GNLTASWIAHSSPVL-KLAVGVDHIYSLAAHGGIRGW 543 (1133)
Q Consensus 475 ~~~h~~~V-~~fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~H~~~V~-~l~fs~~~L~S~s~Dg~I~lW 543 (1133)
...-...+ .+....+.+|++++.+|.|+++|.. |+.+..+..+...+. +..+.++.|+.++.||.|..|
T Consensus 305 ~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 305 NDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred cccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 53322222 2233357799999999999999986 778777877775443 445557789999999988754
No 267
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.33 E-value=1.1e-05 Score=86.95 Aligned_cols=268 Identities=16% Similarity=0.230 Sum_probs=151.0
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCC-CeeeeccCCCcc-----ccccceEEEEE-eCCC---CeEE-ecCCcE
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRP-PCLELRPHPLKE-----TQAGRFLRNIA-CTDT---QLWA-GQECGV 177 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~-~~~~l~~H~~~~-----~~~g~~V~~v~-s~dg---~lla-s~Dg~V 177 (1133)
+.|.-+|++||||..+|.|.++.++....+.. ...+++.|...- ..+...|..+. ++++ .+|. ..|.+|
T Consensus 31 vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdkti 110 (433)
T KOG1354|consen 31 VEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTI 110 (433)
T ss_pred EEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcce
Confidence 77899999999999999999998764322211 123444554311 11223455566 4332 3344 899999
Q ss_pred EEeeCCCCCCcCcCCC-------cc-----cc---CCCC--CCCce--eeccCCCCeEEEEEeCCCCEEEEEeCCCeEEE
Q 043350 178 RFWNLEDSYEPGAGIG-------GR-----VR---RGDE--DAAPF--YESANTSPTMCLMVDCGNRLVWTGHKDGKIRS 238 (1133)
Q Consensus 178 rvWdl~~~~~~~~gh~-------~~-----v~---~g~~--~~~~~--~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~v 238 (1133)
++|.+........+.. +. ++ +-+. .+.+. .-.+|.-.|.++.++.|...++++ .|=.|.+
T Consensus 111 KlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINL 189 (433)
T KOG1354|consen 111 KLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DDLRINL 189 (433)
T ss_pred eeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cceeeee
Confidence 9999876222111000 00 00 0000 01111 113477789999999999998886 5688999
Q ss_pred EeCCCCCCCCCCCcccccccccC-----CCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCC-----ceeeEeCCCCceE
Q 043350 239 WKMDQTLDDANNPFKEGLSWQAH-----RGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESI-----EKSLSLKPEEKHM 306 (1133)
Q Consensus 239 Wd~~~~~~~~~~~~~~~~~l~gH-----~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~-----~~~l~~~~~~~~l 306 (1133)
|+++-... .|. +.-++.| +.-|++..|+|... ++-.|..|+|++-|++.. ...+.-.|....
T Consensus 190 Wnlei~d~----sFn-IVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~- 263 (433)
T KOG1354|consen 190 WNLEIIDQ----SFN-IVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS- 263 (433)
T ss_pred ccccccCC----cee-EEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc-
Confidence 99874111 111 1122222 45688999999855 888888999999999852 111111111111
Q ss_pred EEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecC-CCceeEEEecCCc-----------
Q 043350 307 AALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDAR-SKELLKVFNIEGH----------- 374 (1133)
Q Consensus 307 ~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~-tg~~l~~~~~h~~----------- 374 (1133)
+++++.-- -..+..+. .+..+.++++. .-.+|++||+. ..+++.+++.|..
T Consensus 264 -----~rsffsei-IsSISDvK--Fs~sGryilsR---------Dyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEn 326 (433)
T KOG1354|consen 264 -----SRSFFSEI-ISSISDVK--FSHSGRYILSR---------DYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEN 326 (433)
T ss_pred -----chhhHHHH-hhhhhceE--EccCCcEEEEe---------ccceeEEEeccccCCcceEEeehHhHHHHHHHHhhc
Confidence 00000000 00000000 12222333322 45789999994 7788888887753
Q ss_pred -ce---eEEEeCCCCCccccccceEEEEeeCCCCccccc
Q 043350 375 -IE---NRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGF 409 (1133)
Q Consensus 375 -~v---~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~ 409 (1133)
.| ..++|+.++.. +++|+...-.+.+
T Consensus 327 D~IfdKFec~~sg~~~~---------v~TGsy~n~frvf 356 (433)
T KOG1354|consen 327 DAIFDKFECSWSGNDSY---------VMTGSYNNVFRVF 356 (433)
T ss_pred cchhheeEEEEcCCcce---------EecccccceEEEe
Confidence 12 25677877777 8888888776633
No 268
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.32 E-value=0.00018 Score=84.15 Aligned_cols=153 Identities=12% Similarity=0.128 Sum_probs=107.6
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCC--C---------CeeeeccCCCccccccceEEEEE-eCCCCeEE--ecC
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGR--P---------PCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQE 174 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~--~---------~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~D 174 (1133)
+...-...|||.||.||.+++-.+.+..+.. . .-++|.||.. .|.-+. ..+.+-|. ..+
T Consensus 20 ~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~-------sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 20 AEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNA-------SVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred EEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcc-------eEEEEEeccccccccccCCC
Confidence 4456667799999999999998765432211 1 1246888988 898888 77777777 568
Q ss_pred CcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCccc
Q 043350 175 CGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKE 254 (1133)
Q Consensus 175 g~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~ 254 (1133)
|.|.||-+-... +. ...+..-..+-|.+++|+.+|..+...-.||.|.|=.+++.. -+.
T Consensus 93 GlIiVWmlykgs--W~-------------EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-----Iwg- 151 (1189)
T KOG2041|consen 93 GLIIVWMLYKGS--WC-------------EEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-----IWG- 151 (1189)
T ss_pred ceEEEEeeeccc--HH-------------HHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-----ecc-
Confidence 899999875420 00 011233456679999999999999999999999988887611 111
Q ss_pred ccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCC
Q 043350 255 GLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWES 292 (1133)
Q Consensus 255 ~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~ 292 (1133)
..+++ .....+.|++|.+ ++.+-..|.+.++|.+.
T Consensus 152 -KeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqg 187 (1189)
T KOG2041|consen 152 -KELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQG 187 (1189)
T ss_pred -hhcch--heccceeecccHHHHHhhhcCCcEEEecccc
Confidence 11222 1233678999988 77778889999999876
No 269
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.31 E-value=0.00068 Score=78.65 Aligned_cols=255 Identities=13% Similarity=0.197 Sum_probs=135.4
Q ss_pred CeEEEEEeCCCCEEEEEeC----CCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEe-CCCcEEE
Q 043350 214 PTMCLMVDCGNRLVWTGHK----DGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGG-EGGVIKI 287 (1133)
Q Consensus 214 ~V~~la~spd~~~LaSgs~----Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs-~DgtI~i 287 (1133)
....|+++|++++|++... ++.|..|++.... ..+..+.........-..++++|+++ |+++. .+|+|.+
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~----g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v 113 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT----GTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSV 113 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT----TEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc----ceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEE
Confidence 4567889999999999877 4799999987511 11233333332344556799999999 66665 5899999
Q ss_pred EeCCCC--ceee--EeCCCCceEEEEeecceEEEcc--CceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecC
Q 043350 288 WPWESI--EKSL--SLKPEEKHMAALLVERSFIDLR--AQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDAR 361 (1133)
Q Consensus 288 Wdl~~~--~~~l--~~~~~~~~l~s~~~d~s~~d~~--~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~ 361 (1133)
+++... .... .+...+. ..+.. .......+...+++... ++. ......|.+|++.
T Consensus 114 ~~l~~~g~l~~~~~~~~~~g~----------g~~~~rq~~~h~H~v~~~pdg~~v-~v~--------dlG~D~v~~~~~~ 174 (345)
T PF10282_consen 114 FPLDDDGSLGEVVQTVRHEGS----------GPNPDRQEGPHPHQVVFSPDGRFV-YVP--------DLGADRVYVYDID 174 (345)
T ss_dssp EEECTTSEEEEEEEEEESEEE----------ESSTTTTSSTCEEEEEE-TTSSEE-EEE--------ETTTTEEEEEEE-
T ss_pred EEccCCcccceeeeecccCCC----------CCcccccccccceeEEECCCCCEE-EEE--------ecCCCEEEEEEEe
Confidence 998762 1110 0000000 00000 00001111111222222 222 2455678888887
Q ss_pred CCc--ee--EEEec-CCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCc---eEEEEEecCC
Q 043350 362 SKE--LL--KVFNI-EGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADA---VRRVATRGAG 433 (1133)
Q Consensus 362 tg~--~l--~~~~~-h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~---V~~v~~~p~g 433 (1133)
... +. ..+.. .+..-..+.|+|++++ + .++.-.+++|..+.. ...... +..+...|.+
T Consensus 175 ~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~-------~-Yv~~e~s~~v~v~~~------~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 175 DDTGKLTPVDSIKVPPGSGPRHLAFSPDGKY-------A-YVVNELSNTVSVFDY------DPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp TTS-TEEEEEEEECSTTSSEEEEEE-TTSSE-------E-EEEETTTTEEEEEEE------ETTTTEEEEEEEEESCETT
T ss_pred CCCceEEEeeccccccCCCCcEEEEcCCcCE-------E-EEecCCCCcEEEEee------cccCCceeEEEEeeecccc
Confidence 544 32 23332 3344678999999887 1 344455555542211 101111 1222222221
Q ss_pred cccCCCCCEEEEEECCCC-eEEEE-ecCCeEEEEeCC---C--CeeEEEecCCcceeE--EecCCCEEEEEe-cCCeEEE
Q 043350 434 AFVDDTKRTEAMVLTADG-MIWSG-CTNGLLVQWDGN---G--NRVSDILHHQCAVQC--FCTYGSRMYVGY-VSGYLQI 503 (1133)
Q Consensus 434 ~~~~h~~~V~sl~~spdg-~L~sg-s~DG~I~vWd~~---g--~~l~~~~~h~~~V~~--fs~dg~~Lasgs-~DG~I~v 503 (1133)
+ ........+.++||| +|+++ ...+.|.+|+++ | ..+..+......-.. ++|+|++|+++. .++.|.+
T Consensus 241 -~-~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~v 318 (345)
T PF10282_consen 241 -F-TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSV 318 (345)
T ss_dssp -S-CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred -c-cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEE
Confidence 1 112367889999999 55554 467889999983 2 223333332222333 899999999887 6789999
Q ss_pred EeCC
Q 043350 504 LDLD 507 (1133)
Q Consensus 504 wd~~ 507 (1133)
|+++
T Consensus 319 f~~d 322 (345)
T PF10282_consen 319 FDID 322 (345)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9875
No 270
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.22 E-value=4.7e-06 Score=105.70 Aligned_cols=220 Identities=11% Similarity=0.174 Sum_probs=135.2
Q ss_pred cccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCC
Q 043350 107 QHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLE 183 (1133)
Q Consensus 107 ~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~ 183 (1133)
..+..+|.-.+.+||++||.+++|.... ++. +..++.-.. +.|+.+. +..|.-+. -.||.+-+|...
T Consensus 2212 ~r~~sHp~~~~Yltgs~dgsv~~~~w~~---~~~-v~~~rt~g~------s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2212 RRMTSHPSDPYYLTGSQDGSVRMFEWGH---GQQ-VVCFRTAGN------SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred eeecCCCCCceEEecCCCceEEEEeccC---CCe-EEEeeccCc------chhhhhhhcccCCceeeeccCCceeecccC
Confidence 3456688888999999999999998652 344 444442211 2566666 55555555 789999999987
Q ss_pred C-CCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEe---CCCeEEEEeCCCCCCCCCCCcccccccc
Q 043350 184 D-SYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGH---KDGKIRSWKMDQTLDDANNPFKEGLSWQ 259 (1133)
Q Consensus 184 ~-~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs---~Dg~V~vWd~~~~~~~~~~~~~~~~~l~ 259 (1133)
. .+-.++ .|........|-. ..+++++ .++.+.+||.-.. .....+. .
T Consensus 2282 pk~~~s~q-------------------chnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~-----~~~s~v~--~ 2333 (2439)
T KOG1064|consen 2282 PKPYTSWQ-------------------CHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP-----PMNSLVH--T 2333 (2439)
T ss_pred Ccceeccc-------------------cCCccccceeeee--hhhhccccCCCCCcccchhcccC-----cccceee--e
Confidence 5 222222 3333444444432 5566665 4689999997541 1112222 8
Q ss_pred cCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEE
Q 043350 260 AHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCM 338 (1133)
Q Consensus 260 gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l 338 (1133)
.|.+.++++++.|..+ |+|||.+|.|++||++.......+.. ++ ...++
T Consensus 2334 ~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------------~~----------------~~~~f 2383 (2439)
T KOG1064|consen 2334 CHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------------LD----------------TREYF 2383 (2439)
T ss_pred ecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------------hh----------------hhhee
Confidence 9999999999999999 99999999999999976211111100 00 11233
Q ss_pred EecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCc
Q 043350 339 LSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEK 405 (1133)
Q Consensus 339 ~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~ 405 (1133)
..+ +..|.++||++..-.+++++.... .-.++ |-..|.+ ..-....||.+++.|++
T Consensus 2384 ~~~--------ss~g~ikIw~~s~~~ll~~~p~e~-ak~gf-Fr~~g~Q-~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2384 VTG--------SSEGNIKIWRLSEFGLLHTFPSEH-AKQGF-FRNIGMQ-INVGQCNRIFSCGADGT 2439 (2439)
T ss_pred ecc--------CcccceEEEEccccchhhcCchhh-cccch-hhhcCce-eeeccCceEEEecCCCC
Confidence 344 678889999998888887775432 11122 3333321 11122234667777663
No 271
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.22 E-value=0.0005 Score=77.33 Aligned_cols=186 Identities=12% Similarity=0.015 Sum_probs=111.5
Q ss_pred eCCCCeEE-ecCCcEEEeeCCC-CCCcCcCCCccccCC-CCCCCceeeccCCCCeEEEE-EeC-CCCEEEEEeCCCeEEE
Q 043350 164 CTDTQLWA-GQECGVRFWNLED-SYEPGAGIGGRVRRG-DEDAAPFYESANTSPTMCLM-VDC-GNRLVWTGHKDGKIRS 238 (1133)
Q Consensus 164 s~dg~lla-s~Dg~VrvWdl~~-~~~~~~gh~~~v~~g-~~~~~~~~~~~h~s~V~~la-~sp-d~~~LaSgs~Dg~V~v 238 (1133)
+.||+.++ +..|.|.++|.++ ....+.-. ++.. +...+.++. |+--+. |++ +|.+++..|. |...|
T Consensus 275 nsDGkrIvFq~~GdIylydP~td~lekldI~---lpl~rk~k~~k~~~-----pskyledfa~~~Gd~ia~VSR-GkaFi 345 (668)
T COG4946 275 NSDGKRIVFQNAGDIYLYDPETDSLEKLDIG---LPLDRKKKQPKFVN-----PSKYLEDFAVVNGDYIALVSR-GKAFI 345 (668)
T ss_pred CCCCcEEEEecCCcEEEeCCCcCcceeeecC---CccccccccccccC-----HHHhhhhhccCCCcEEEEEec-CcEEE
Confidence 57899998 9999999999877 22211000 0000 001111111 111111 333 7889999887 77777
Q ss_pred EeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCC-cEEEEeCCCCceeeEeCCCCceEEEEeecceEE
Q 043350 239 WKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGG-VIKIWPWESIEKSLSLKPEEKHMAALLVERSFI 316 (1133)
Q Consensus 239 Wd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~Dg-tI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~ 316 (1133)
.+...+. . .-.+|.+.|.-..+..+++ ++.|..|| .+-|+|.++........+-+.. .
T Consensus 346 ~~~~~~~---------~-iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I----------~ 405 (668)
T COG4946 346 MRPWDGY---------S-IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNI----------E 405 (668)
T ss_pred ECCCCCe---------e-EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccce----------E
Confidence 7765411 1 2346788899999999988 99999999 8999999875322111111211 1
Q ss_pred EccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEE
Q 043350 317 DLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVK 396 (1133)
Q Consensus 317 d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~ 396 (1133)
.+. .+++++.++.++.+. .+-+.|+.+|.....=+...+.|+.++|+|++++
T Consensus 406 av~-----------vs~dGK~~vvaNdr~--------el~vididngnv~~idkS~~~lItdf~~~~nsr~--------- 457 (668)
T COG4946 406 AVK-----------VSPDGKKVVVANDRF--------ELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRW--------- 457 (668)
T ss_pred EEE-----------EcCCCcEEEEEcCce--------EEEEEEecCCCeeEecccccceeEEEEEcCCcee---------
Confidence 111 234445444443333 3444677777765544555667899999999998
Q ss_pred EEeeCCCCcc
Q 043350 397 FVSSNKKEKP 406 (1133)
Q Consensus 397 lasgs~Dg~i 406 (1133)
+|-+-.+|.+
T Consensus 458 iAYafP~gy~ 467 (668)
T COG4946 458 IAYAFPEGYY 467 (668)
T ss_pred EEEecCccee
Confidence 7777666654
No 272
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.21 E-value=1.1e-05 Score=93.29 Aligned_cols=126 Identities=16% Similarity=0.160 Sum_probs=88.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCC
Q 043350 223 GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKP 301 (1133)
Q Consensus 223 d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~ 301 (1133)
+...++-|...|.|.++++..++- .....-.+|.+.|+++.++.+-. |.|++.|+.+..|+.........+..
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~i------t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~ 142 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEI------TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE 142 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeE------EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc
Confidence 556788888899999999876222 22223457999999999987766 99999999999999876433322222
Q ss_pred CCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEe
Q 043350 302 EEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDT 381 (1133)
Q Consensus 302 ~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~ 381 (1133)
.... +..+| ..+++..++++ .+.|++||+.+++.+.+|.+|..+|.++.|
T Consensus 143 ~~~~------------------~~sl~--is~D~~~l~~a----------s~~ik~~~~~~kevv~~ftgh~s~v~t~~f 192 (541)
T KOG4547|consen 143 QKPL------------------VSSLC--ISPDGKILLTA----------SRQIKVLDIETKEVVITFTGHGSPVRTLSF 192 (541)
T ss_pred CCCc------------------cceEE--EcCCCCEEEec----------cceEEEEEccCceEEEEecCCCcceEEEEE
Confidence 2111 11112 12333333333 578999999999999999999999999998
Q ss_pred CCC
Q 043350 382 QSV 384 (1133)
Q Consensus 382 sp~ 384 (1133)
..+
T Consensus 193 ~~~ 195 (541)
T KOG4547|consen 193 TTL 195 (541)
T ss_pred EEe
Confidence 765
No 273
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.18 E-value=9.5e-05 Score=88.19 Aligned_cols=145 Identities=13% Similarity=0.045 Sum_probs=92.5
Q ss_pred ccccCCCCCEEEEecCC---CeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE---ecC--CcEE
Q 043350 108 HKPFQPMVEFIGSGGGT---GIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA---GQE--CGVR 178 (1133)
Q Consensus 108 ~~~~~p~g~~lasgs~d---g~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla---s~D--g~Vr 178 (1133)
...++|||++|+.++.+ ..|++|+..+ ++. ..+..+.. .+.+++ ++||+.|+ +.+ ..|.
T Consensus 194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~---g~~--~~~~~~~~-------~~~~~~~spDg~~l~~~~~~~~~~~i~ 261 (417)
T TIGR02800 194 SPAWSPDGQKLAYVSFESGKPEIYVQDLAT---GQR--EKVASFPG-------MNGAPAFSPDGSKLAVSLSKDGNPDIY 261 (417)
T ss_pred cccCCCCCCEEEEEEcCCCCcEEEEEECCC---CCE--EEeecCCC-------CccceEECCCCCEEEEEECCCCCccEE
Confidence 36789999999887543 4789998873 322 23333443 444566 89998666 333 3588
Q ss_pred EeeCCCCC-CcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeC-CC--eEEEEeCCCCCCCCCCCccc
Q 043350 179 FWNLEDSY-EPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHK-DG--KIRSWKMDQTLDDANNPFKE 254 (1133)
Q Consensus 179 vWdl~~~~-~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~-Dg--~V~vWd~~~~~~~~~~~~~~ 254 (1133)
+|++.+.. ..+ ..+........|+|+++.|+..+. ++ .|.+|++.+ ..
T Consensus 262 ~~d~~~~~~~~l-------------------~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~---------~~ 313 (417)
T TIGR02800 262 VMDLDGKQLTRL-------------------TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG---------GE 313 (417)
T ss_pred EEECCCCCEEEC-------------------CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC---------CC
Confidence 88887531 111 112223345689999998876654 34 466667665 22
Q ss_pred ccccccCCCCeEEEEEeeCCc-EEEEeCCC---cEEEEeCCC
Q 043350 255 GLSWQAHRGPVLAMIFSSQGD-LWSGGEGG---VIKIWPWES 292 (1133)
Q Consensus 255 ~~~l~gH~~~V~sl~fsp~g~-L~Sgs~Dg---tI~iWdl~~ 292 (1133)
...+..+...+..+.|+|+|+ |+.++.++ .|.+||+.+
T Consensus 314 ~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 314 VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 233444556677889999999 77777665 788888765
No 274
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=98.15 E-value=3.3e-05 Score=84.76 Aligned_cols=36 Identities=28% Similarity=0.490 Sum_probs=27.6
Q ss_pred EEEEEEcCCCCCCc-hhhhhhhcCCCCCccEEEEeeeeccc
Q 043350 575 LVGTWNVGQGRASH-ESLLSWLGSVSSDVGIVAVGLQEVEM 614 (1133)
Q Consensus 575 ~v~TWNv~~~~~~~-~~l~~wl~~~~~~~di~vig~QE~~~ 614 (1133)
.+.|||||+-+... ..|.+||.. .+||| |+|||+-+
T Consensus 2 ki~swNVNgir~~~~~~~~~~l~~--~~~DI--iclQEtK~ 38 (250)
T PRK13911 2 KLISWNVNGLRACMTKGFMDFFNS--VDADV--FCIQESKM 38 (250)
T ss_pred EEEEEEeCChhHhhhhhHHHHHHh--cCCCE--EEEEeecc
Confidence 57899999977655 368899974 56776 57999854
No 275
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=98.13 E-value=1.6e-05 Score=88.02 Aligned_cols=36 Identities=31% Similarity=0.524 Sum_probs=27.4
Q ss_pred EEEEEEcCCCCCCchhhhhhhcCCCCCccEEEEeeeeccc
Q 043350 575 LVGTWNVGQGRASHESLLSWLGSVSSDVGIVAVGLQEVEM 614 (1133)
Q Consensus 575 ~v~TWNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~~ 614 (1133)
.+.|||+++.......+..||.. .+|||++ |||+..
T Consensus 2 ri~t~Ni~g~~~~~~~~~~~l~~--~~~DIi~--LQE~~~ 37 (254)
T TIGR00195 2 KIISWNVNGLRARLHKGLAWLKE--NQPDVLC--LQETKV 37 (254)
T ss_pred EEEEEEcCcHHHhHHHHHHHHHh--cCCCEEE--EEeccc
Confidence 57899999876666667888874 4678765 999864
No 276
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.13 E-value=0.0005 Score=81.96 Aligned_cols=153 Identities=10% Similarity=0.053 Sum_probs=81.1
Q ss_pred ceeEeecCC---CceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeC-CCCccccccccccceeeccCCceEEEEE
Q 043350 354 SFSLWDARS---KELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSN-KKEKPHGFLQRSRNAIMGAADAVRRVAT 429 (1133)
Q Consensus 354 ~I~lWD~~t---g~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs-~Dg~i~~~~~~~~~~~~~~~~~V~~v~~ 429 (1133)
.+.+||+.. ++..+.............|+||++. |+..+ .++..+.+... +.........
T Consensus 258 ~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~---------Laf~s~~~g~~~ly~~~----~~~~g~~~~~--- 321 (428)
T PRK01029 258 FIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTR---------LVFVSNKDGRPRIYIMQ----IDPEGQSPRL--- 321 (428)
T ss_pred eEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCE---------EEEEECCCCCceEEEEE----CcccccceEE---
Confidence 344577664 3333333333334467899999987 66554 34433211100 0000011111
Q ss_pred ecCCcccCCCCCEEEEEECCCC-eEEEEecC---CeEEEEeCCCCeeEEEecCCcceeE--EecCCCEEEEEec---CCe
Q 043350 430 RGAGAFVDDTKRTEAMVLTADG-MIWSGCTN---GLLVQWDGNGNRVSDILHHQCAVQC--FCTYGSRMYVGYV---SGY 500 (1133)
Q Consensus 430 ~p~g~~~~h~~~V~sl~~spdg-~L~sgs~D---G~I~vWd~~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~---DG~ 500 (1133)
+......+....++||| .|+..+.+ ..|.+||+.+.....+......+.. |+|||++|+.... ...
T Consensus 322 -----lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~ 396 (428)
T PRK01029 322 -----LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESE 396 (428)
T ss_pred -----eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCce
Confidence 12223345677899999 66655432 3689999965444455433223333 9999998875432 457
Q ss_pred EEEEeCCCCcceeeeccccCeEEeeec
Q 043350 501 LQILDLDGNLTASWIAHSSPVLKLAVG 527 (1133)
Q Consensus 501 I~vwd~~g~~l~~~~~H~~~V~~l~fs 527 (1133)
|++||+.+.....+....+.+...+|+
T Consensus 397 L~~vdl~~g~~~~Lt~~~g~~~~p~Ws 423 (428)
T PRK01029 397 LYLISLITKKTRKIVIGSGEKRFPSWG 423 (428)
T ss_pred EEEEECCCCCEEEeecCCCcccCceec
Confidence 888998865444343333334444443
No 277
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=0.0014 Score=75.18 Aligned_cols=296 Identities=16% Similarity=0.143 Sum_probs=157.3
Q ss_pred EEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeC-----------CC
Q 043350 216 MCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGE-----------GG 283 (1133)
Q Consensus 216 ~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~-----------Dg 283 (1133)
+-+.|||.|.+|+|-..-| |.+|--.. +..++.+ .| -.|.-+.|||..+ |+|-|. ..
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~--------f~r~~RF-~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~ 282 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGES--------FDRIQRF-YH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ 282 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCcc--------HHHHHhc-cC-CCceeeecCCccceEEEecCCccccCcccCCCc
Confidence 6788999999999999866 88996543 2333333 35 3588999999999 998763 25
Q ss_pred cEEEEeCCCCc---------------eeeEeCCCCceEEEEeecce-EE--------EccCce--eeeccccCCCCCeEE
Q 043350 284 VIKIWPWESIE---------------KSLSLKPEEKHMAALLVERS-FI--------DLRAQV--TVNGACSISSTEIKC 337 (1133)
Q Consensus 284 tI~iWdl~~~~---------------~~l~~~~~~~~l~s~~~d~s-~~--------d~~~~~--~v~~~~~~~~~~~~~ 337 (1133)
.++|||+.++. ..+.++.+++.+|....+.- +. +..+-. .+..+.+.|.+..+.
T Consensus 283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llA 362 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLA 362 (698)
T ss_pred eEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEE
Confidence 78999999852 23345556666555443222 11 111110 222223322322222
Q ss_pred EEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCc----cc-ccccc
Q 043350 338 MLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEK----PH-GFLQR 412 (1133)
Q Consensus 338 l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~----i~-~~~~~ 412 (1133)
..+.... ..-..+.|-.+.+++.+++-+.+.-.-..+-|..+|++ |..- -|.. ++ .+..-
T Consensus 363 Ywtpe~~-----~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdy---------Lcvk-vdR~tK~~~~g~f~n~ 427 (698)
T KOG2314|consen 363 YWTPETN-----NIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDY---------LCVK-VDRHTKSKVKGQFSNL 427 (698)
T ss_pred EEccccc-----CCcceEEEEecCccceeeeccceeeeccEEEeccCCcE---------EEEE-EEeeccccccceEeeE
Confidence 2221000 11123444445555555544433322234556666665 3211 1111 11 00000
Q ss_pred ccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEE--EEec-CCeEEEEeCCC-----CeeEEEecCCccee
Q 043350 413 SRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIW--SGCT-NGLLVQWDGNG-----NRVSDILHHQCAVQ 483 (1133)
Q Consensus 413 ~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~--sgs~-DG~I~vWd~~g-----~~l~~~~~h~~~V~ 483 (1133)
.+..+....-+|..+.. ...|...++-|.| .++ +|.. ..++.+|-.+. .++..+......-.
T Consensus 428 eIfrireKdIpve~vel---------ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~v 498 (698)
T KOG2314|consen 428 EIFRIREKDIPVEVVEL---------KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTV 498 (698)
T ss_pred EEEEeeccCCCceeeec---------chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceE
Confidence 11112222223333332 3557778888988 443 3332 35688887642 33444443222222
Q ss_pred EEecCCCEEEEEe---cCCeEEEEeCCC-CcceeeeccccCeEEeeec--ccceeeecc------cCCeeecccc
Q 043350 484 CFCTYGSRMYVGY---VSGYLQILDLDG-NLTASWIAHSSPVLKLAVG--VDHIYSLAA------HGGIRGWTFT 546 (1133)
Q Consensus 484 ~fs~dg~~Lasgs---~DG~I~vwd~~g-~~l~~~~~H~~~V~~l~fs--~~~L~S~s~------Dg~I~lW~l~ 546 (1133)
.|+|.|++++++. ..|.+..+|++- .+...-....-.-+.+.|+ |+|+++++. |..-++|++.
T Consensus 499 fwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 499 FWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred EEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 2999999988765 578999999874 2222222222234678888 999999876 5556777754
No 278
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.07 E-value=5.4e-05 Score=80.61 Aligned_cols=277 Identities=17% Similarity=0.202 Sum_probs=146.2
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCC------------CCeEEEEEeeCCc---E
Q 043350 212 TSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHR------------GPVLAMIFSSQGD---L 276 (1133)
Q Consensus 212 ~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~------------~~V~sl~fsp~g~---L 276 (1133)
...|+++.|...|.+|++|...|.|.++.-..... ...+....+++|. ..|..+.|..++. +
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~---ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYG---CEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccc---cchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 34688999999999999999999999998653110 1123334456663 4678888887754 7
Q ss_pred EEEeCCCcEEEEeCCCC-ceeeE-------e-CCCCceEEE--------EeecceEEEcc-------Cce-eeeccccCC
Q 043350 277 WSGGEGGVIKIWPWESI-EKSLS-------L-KPEEKHMAA--------LLVERSFIDLR-------AQV-TVNGACSIS 331 (1133)
Q Consensus 277 ~Sgs~DgtI~iWdl~~~-~~~l~-------~-~~~~~~l~s--------~~~d~s~~d~~-------~~~-~v~~~~~~~ 331 (1133)
+-.+.|.+|++|.+... .+.+. + .|.+..+.+ ++....++... .+. .++.+. ..
T Consensus 103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS-~N 181 (460)
T COG5170 103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSIS-FN 181 (460)
T ss_pred EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeee-ec
Confidence 77789999999998652 11110 0 011100000 00000011111 111 111111 12
Q ss_pred CCCeEEEEecCCceEEEec--CCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccc
Q 043350 332 STEIKCMLSDHARARVWCA--QPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGF 409 (1133)
Q Consensus 332 ~~~~~~l~S~d~~i~vwss--~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~ 409 (1133)
+....++.+.+-++.+|.. .|+++.|-|+.... +..-...|++..|+|..-. + +.-.+..|.|+..
T Consensus 182 sD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~n----meeLteVItSaeFhp~~cn-------~-fmYSsSkG~Ikl~ 249 (460)
T COG5170 182 SDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHN----MEELTEVITSAEFHPEMCN-------V-FMYSSSKGEIKLN 249 (460)
T ss_pred CchheeeeccceeeeeccccccCCceEEEeccCcc----HHHHHHHHhhcccCHhHcc-------e-EEEecCCCcEEeh
Confidence 3333444444445555542 24444444443111 0111234677888885432 1 5566778888732
Q ss_pred cccccceeeccCCceEEEEEecCC--cccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCC--CCeeEEEecCC-----
Q 043350 410 LQRSRNAIMGAADAVRRVATRGAG--AFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGN--GNRVSDILHHQ----- 479 (1133)
Q Consensus 410 ~~~~~~~~~~~~~~V~~v~~~p~g--~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~--g~~l~~~~~h~----- 479 (1133)
+.|.... -............+.. -+.+-...|..+.|+++| ++++ -.--+|++||.+ .+++.++.-|.
T Consensus 250 DlRq~al-cdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls-RdyltvkiwDvnm~k~pikTi~~h~~l~~~ 327 (460)
T COG5170 250 DLRQSAL-CDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS-RDYLTVKIWDVNMAKNPIKTIPMHCDLMDE 327 (460)
T ss_pred hhhhhhh-ccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE-eccceEEEEecccccCCceeechHHHHHHH
Confidence 2221000 0000000000011000 033445668889999999 5554 455689999983 47888875542
Q ss_pred -------cceeE-----EecCCCEEEEEecCCeEEEEeC
Q 043350 480 -------CAVQC-----FCTYGSRMYVGYVSGYLQILDL 506 (1133)
Q Consensus 480 -------~~V~~-----fs~dg~~Lasgs~DG~I~vwd~ 506 (1133)
..|.. ||.|.+.+.+|+.....-+|-+
T Consensus 328 l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 328 LNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred HHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 33432 7888888888888777766653
No 279
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.07 E-value=0.00031 Score=84.22 Aligned_cols=127 Identities=13% Similarity=0.042 Sum_probs=77.9
Q ss_pred EEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecC---CcEEEeeCCCCCCcCcCCCccccCCC
Q 043350 127 FKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQE---CGVRFWNLEDSYEPGAGIGGRVRRGD 200 (1133)
Q Consensus 127 irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~D---g~VrvWdl~~~~~~~~gh~~~v~~g~ 200 (1133)
+.++|.+ +.. ...+..+.. .+.... +|||+.|+ +.+ ..|.+|++.+.....
T Consensus 181 l~~~d~~----g~~-~~~l~~~~~-------~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----------- 237 (430)
T PRK00178 181 LQRSDYD----GAR-AVTLLQSRE-------PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----------- 237 (430)
T ss_pred EEEECCC----CCC-ceEEecCCC-------ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-----------
Confidence 5555665 444 344444554 677777 99999887 322 368888987632110
Q ss_pred CCCCceeeccCCCCeEEEEEeCCCCEEE-EEeCCC--eEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-E
Q 043350 201 EDAAPFYESANTSPTMCLMVDCGNRLVW-TGHKDG--KIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-L 276 (1133)
Q Consensus 201 ~~~~~~~~~~h~s~V~~la~spd~~~La-Sgs~Dg--~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L 276 (1133)
.....+.+.+.+|+|+|+.|+ +.+.+| .|.+||+.+ .....+..+........|+|+|+ |
T Consensus 238 -------l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~---------~~~~~lt~~~~~~~~~~~spDg~~i 301 (430)
T PRK00178 238 -------ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS---------RQLSRVTNHPAIDTEPFWGKDGRTL 301 (430)
T ss_pred -------ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC---------CCeEEcccCCCCcCCeEECCCCCEE
Confidence 001112344678999998876 555555 577778876 23334455556677789999999 6
Q ss_pred EEEe-CCC--cEEEEeCCC
Q 043350 277 WSGG-EGG--VIKIWPWES 292 (1133)
Q Consensus 277 ~Sgs-~Dg--tI~iWdl~~ 292 (1133)
+..+ .+| .|.++++.+
T Consensus 302 ~f~s~~~g~~~iy~~d~~~ 320 (430)
T PRK00178 302 YFTSDRGGKPQIYKVNVNG 320 (430)
T ss_pred EEEECCCCCceEEEEECCC
Confidence 5555 344 466666654
No 280
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=98.07 E-value=0.00011 Score=79.09 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=39.9
Q ss_pred ccCceeeccccc--ccccccccceeEEEEEEEc-CeEEEEEecccccChHHHHHHHHHHHHHHHh
Q 043350 677 HVGDVDAAAVPC--GFGRAIGNKGGVGLRIRVY-DRTICFVNCHLAAHLEAVNRRNADYDHIYRN 738 (1133)
Q Consensus 677 ~i~~v~~~~v~~--G~~~~~gnKG~v~~r~~~~-~~~~~fvn~Hlaa~~~~~~~Rn~d~~~i~~~ 738 (1133)
.|.+|....+.. |+. -.|++-+++... +..|-+||.||.=.. +.|-++...|+..
T Consensus 101 pi~~v~~~~lp~~~~~~----~Rgal~a~~~~~~g~~l~V~~~HL~l~~---~~R~~Q~~~L~~~ 158 (259)
T COG3568 101 PIRDVENLALPDPTGLE----PRGALLAEIELPGGKPLRVINAHLGLSE---ESRLRQAAALLAL 158 (259)
T ss_pred cccchhhccCCCCCCCC----CceeEEEEEEcCCCCEEEEEEEeccccH---HHHHHHHHHHHhh
Confidence 466666666653 543 359999999884 679999999998443 4477888888773
No 281
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.07 E-value=0.00029 Score=84.67 Aligned_cols=96 Identities=14% Similarity=0.007 Sum_probs=59.4
Q ss_pred eEEEEE-eCCCCeEE--ec-CC--cEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEE-EE
Q 043350 158 FLRNIA-CTDTQLWA--GQ-EC--GVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVW-TG 230 (1133)
Q Consensus 158 ~V~~v~-s~dg~lla--s~-Dg--~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~La-Sg 230 (1133)
.+.+.. +|||+.++ +. ++ .|.+||+.+..... .....+.....+|+|||+.|+ +.
T Consensus 219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~------------------lt~~~g~~~~~~wSPDG~~La~~~ 280 (448)
T PRK04792 219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK------------------VTSFPGINGAPRFSPDGKKLALVL 280 (448)
T ss_pred cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE------------------ecCCCCCcCCeeECCCCCEEEEEE
Confidence 566667 99999888 32 33 57888876532110 000011234578999999776 45
Q ss_pred eCCCe--EEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEe
Q 043350 231 HKDGK--IRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGG 280 (1133)
Q Consensus 231 s~Dg~--V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs 280 (1133)
+.+|. |.+||+.+ .....+..|...+...+|+|+|+ |+..+
T Consensus 281 ~~~g~~~Iy~~dl~t---------g~~~~lt~~~~~~~~p~wSpDG~~I~f~s 324 (448)
T PRK04792 281 SKDGQPEIYVVDIAT---------KALTRITRHRAIDTEPSWHPDGKSLIFTS 324 (448)
T ss_pred eCCCCeEEEEEECCC---------CCeEECccCCCCccceEECCCCCEEEEEE
Confidence 66775 66667765 23334455555677889999998 65444
No 282
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.02 E-value=6.3e-05 Score=88.23 Aligned_cols=154 Identities=16% Similarity=0.256 Sum_probs=102.1
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE---eCCCCeEE--ecCCcEEEeeCC
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA---CTDTQLWA--GQECGVRFWNLE 183 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~---s~dg~lla--s~Dg~VrvWdl~ 183 (1133)
++..|.|+-+|.++.-|.+.+- ++ .|.++|.. |. |-. +. .|-.+. .+...+++ .......+|++.
T Consensus 30 ~si~p~grdi~lAsr~gl~i~d-ld--~p~~ppr~-l~-h~t-pw----~vad~qws~h~a~~~wiVsts~qkaiiwnlA 99 (1081)
T KOG0309|consen 30 VSINPSGRDIVLASRQGLYIID-LD--DPFTPPRW-LH-HIT-PW----QVADVQWSPHPAKPYWIVSTSNQKAIIWNLA 99 (1081)
T ss_pred eeeccccchhhhhhhcCeEEEe-cc--CCCCCcee-ee-ccC-cc----hhcceecccCCCCceeEEecCcchhhhhhhh
Confidence 5668999999999998875443 33 34555322 21 111 11 122222 23344444 445566789887
Q ss_pred CCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCC
Q 043350 184 DSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHR 262 (1133)
Q Consensus 184 ~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~ 262 (1133)
.... .+-.++..+|..+|+.+.|+| ....|++++.|-.+..||++. +-.++..+..-.
T Consensus 100 ~ss~--------------~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS-------p~~p~ys~~~w~ 158 (1081)
T KOG0309|consen 100 KSSS--------------NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS-------PHRPFYSTSSWR 158 (1081)
T ss_pred cCCc--------------cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccC-------CCcceeeeeccc
Confidence 5321 122678889999999999999 567899999999999999986 114444554445
Q ss_pred CCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCC
Q 043350 263 GPVLAMIFSSQGD-LWSGGEGGVIKIWPWESI 293 (1133)
Q Consensus 263 ~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~ 293 (1133)
..-..|+|+-... ++..+....|++||.+.+
T Consensus 159 s~asqVkwnyk~p~vlasshg~~i~vwd~r~g 190 (1081)
T KOG0309|consen 159 SAASQVKWNYKDPNVLASSHGNDIFVWDLRKG 190 (1081)
T ss_pred ccCceeeecccCcchhhhccCCceEEEeccCC
Confidence 5667889986655 666678888999999864
No 283
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.01 E-value=0.0019 Score=69.36 Aligned_cols=70 Identities=17% Similarity=0.137 Sum_probs=50.9
Q ss_pred EE-eCCCCeEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEE
Q 043350 162 IA-CTDTQLWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSW 239 (1133)
Q Consensus 162 v~-s~dg~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vW 239 (1133)
++ +.+|++|| -.|..|.|-...+.+.+..+.- .+..-....=.-++||||+.+||.+...|+|+++
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kc------------qVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vf 70 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKC------------QVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVF 70 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEE------------ecCCCCCchheEEEECCCCcEEEEEcCCCeEEEE
Confidence 45 78999999 8999999987776544331111 1111122335678999999999999999999999
Q ss_pred eCCC
Q 043350 240 KMDQ 243 (1133)
Q Consensus 240 d~~~ 243 (1133)
|+.+
T Consensus 71 dl~g 74 (282)
T PF15492_consen 71 DLMG 74 (282)
T ss_pred eccc
Confidence 9986
No 284
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.00 E-value=7.1e-05 Score=78.32 Aligned_cols=177 Identities=10% Similarity=0.054 Sum_probs=101.3
Q ss_pred ccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCC
Q 043350 253 KEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSIS 331 (1133)
Q Consensus 253 ~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~ 331 (1133)
.+..++..|.++-.+-+.+-.++ ++++..||.+.+.+.+.. ..+.-...... .+..+++.+
T Consensus 80 ~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~-~~~~~~i~~~~--~~~as~~~~--------------- 141 (319)
T KOG4714|consen 80 DPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKD-LALMSRIPSIH--SGSASRKIC--------------- 141 (319)
T ss_pred CceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHH-Hhhhhhccccc--cccccccee---------------
Confidence 34445556655544444444566 999999999999988751 11100000000 000000000
Q ss_pred CCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccc
Q 043350 332 STEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQ 411 (1133)
Q Consensus 332 ~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~ 411 (1133)
..+..+.+ +++-.|+. -+.++.|+++..+.+..-......|++++-+|..+. + +++|+.||.+-.|+.
T Consensus 142 -~~~~~i~s--~~~g~~n~-~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~-------~-v~cgt~dg~~~l~d~ 209 (319)
T KOG4714|consen 142 -RHGNSILS--GGCGNWNA-QDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQH-------L-VCCGTDDGIVGLWDA 209 (319)
T ss_pred -ecccEEec--CCcceEee-ccceeeecccccccccccccccccchhhhCCccccc-------E-EEEecCCCeEEEEEc
Confidence 11111221 23344543 335667777654444333333344889999997665 1 677888888755554
Q ss_pred cccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC--eEEEEecCCeEEEEeCCCCeeE
Q 043350 412 RSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG--MIWSGCTNGLLVQWDGNGNRVS 473 (1133)
Q Consensus 412 ~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg--~L~sgs~DG~I~vWd~~g~~l~ 473 (1133)
+.. ..|...+..|+..|+.+.|+|.. .|+++++||.+..||.++..+.
T Consensus 210 rn~--------------~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~ 259 (319)
T KOG4714|consen 210 RNV--------------AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLS 259 (319)
T ss_pred ccc--------------cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEE
Confidence 422 22334466777778888888866 9999999999999999875543
No 285
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.98 E-value=0.00043 Score=73.90 Aligned_cols=110 Identities=13% Similarity=0.162 Sum_probs=76.0
Q ss_pred cCCCCCEEEEEECCCC--eEEEEecCCeEEEEeCC--CCeeEE-EecCCcceeEEe---cCCCEEEEEecCCeEEEEeCC
Q 043350 436 VDDTKRTEAMVLTADG--MIWSGCTNGLLVQWDGN--GNRVSD-ILHHQCAVQCFC---TYGSRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 436 ~~h~~~V~sl~~spdg--~L~sgs~DG~I~vWd~~--g~~l~~-~~~h~~~V~~fs---~dg~~Lasgs~DG~I~vwd~~ 507 (1133)
..|.-.++...|+... .+++|+.||.+..||+. ++.+.. .+.|...|.|+. |.+.+|++|+.|-.|++||..
T Consensus 162 k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtR 241 (339)
T KOG0280|consen 162 KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTR 241 (339)
T ss_pred cccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehh
Confidence 4455555555555544 89999999999999994 455544 566888998833 356799999999999999987
Q ss_pred --CCcceeeeccccCeEEeeec---ccceeeecccCCeeecccc
Q 043350 508 --GNLTASWIAHSSPVLKLAVG---VDHIYSLAAHGGIRGWTFT 546 (1133)
Q Consensus 508 --g~~l~~~~~H~~~V~~l~fs---~~~L~S~s~Dg~I~lW~l~ 546 (1133)
++++..- .-.+.|+.+..+ ...|+.+......++-+..
T Consensus 242 nm~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~ 284 (339)
T KOG0280|consen 242 NMGKPLFKA-KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSS 284 (339)
T ss_pred cccCccccC-ccccceEEEEecchhhhHHHHHHHhcCceEEEec
Confidence 4555421 123778888877 3344555555556665543
No 286
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.97 E-value=0.0022 Score=82.79 Aligned_cols=309 Identities=14% Similarity=0.133 Sum_probs=166.3
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeC
Q 043350 212 TSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPW 290 (1133)
Q Consensus 212 ~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl 290 (1133)
...|.++.+-++...|+.+..+|.|.+...+.... . ..+.....-...|.+++||||+. |+-...+++|.+-.-
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~--~---~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~ 149 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPD--E---DEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR 149 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCC--C---ceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec
Confidence 34688888888999999999999999993332000 0 22222223367899999999999 777777888877643
Q ss_pred CC-CceeeEeCCC---CceEEEEeecceEEEccC--cee--------------eeccccCCCCCeEEEEecCCceEEEec
Q 043350 291 ES-IEKSLSLKPE---EKHMAALLVERSFIDLRA--QVT--------------VNGACSISSTEIKCMLSDHARARVWCA 350 (1133)
Q Consensus 291 ~~-~~~~l~~~~~---~~~l~s~~~d~s~~d~~~--~~~--------------v~~~~~~~~~~~~~l~S~d~~i~vwss 350 (1133)
+- ......++++ ....++.++.+.--.+.+ .+. ...+. ..+....+..-+||....-++
T Consensus 150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss 228 (928)
T PF04762_consen 150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSS 228 (928)
T ss_pred cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEE
Confidence 32 1111222211 112233322222111110 000 00011 122333333334443333222
Q ss_pred C------CCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccc--cccccccceeeccCC
Q 043350 351 Q------PLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPH--GFLQRSRNAIMGAAD 422 (1133)
Q Consensus 351 ~------d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~--~~~~~~~~~~~~~~~ 422 (1133)
- -..|++|+ +.|.+..+-+.-.+-...++|.|.|.+ ||+......-. .|..| .
T Consensus 229 ~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG~l---------IA~~q~~~~~~~VvFfEr---------N 289 (928)
T PF04762_consen 229 VEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSGNL---------IASSQRLPDRHDVVFFER---------N 289 (928)
T ss_pred EEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCCCCCE---------EEEEEEcCCCcEEEEEec---------C
Confidence 1 24677777 446655555544444568999999998 87765411111 11111 1
Q ss_pred ceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCCC---CeeEEEecCC-cce--eEEecC-CCEEEE
Q 043350 423 AVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGNG---NRVSDILHHQ-CAV--QCFCTY-GSRMYV 494 (1133)
Q Consensus 423 ~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g---~~l~~~~~h~-~~V--~~fs~d-g~~Las 494 (1133)
..+.-.|. -.+......|..+.|++|+ .|+....|. |.+|.... -+.+++.... ..+ ..|+|. ...|..
T Consensus 290 GLrhgeF~--l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v 366 (928)
T PF04762_consen 290 GLRHGEFT--LRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHV 366 (928)
T ss_pred CcEeeeEe--cCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEE
Confidence 11111122 0022345678899999999 777766555 99998844 2333443321 122 337664 345666
Q ss_pred EecCCeEEEEeC---------------------CCC-c-ceeee-------------ccccCeEEeeec--ccceeeecc
Q 043350 495 GYVSGYLQILDL---------------------DGN-L-TASWI-------------AHSSPVLKLAVG--VDHIYSLAA 536 (1133)
Q Consensus 495 gs~DG~I~vwd~---------------------~g~-~-l~~~~-------------~H~~~V~~l~fs--~~~L~S~s~ 536 (1133)
.+.+|.+..++. +|+ + +.-|+ .-..+|.+++|+ +..++....
T Consensus 367 ~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~ 446 (928)
T PF04762_consen 367 LTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTS 446 (928)
T ss_pred EecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEEC
Confidence 666566655441 111 0 00011 235789999998 445899999
Q ss_pred cCCeeeccccCC
Q 043350 537 HGGIRGWTFTSP 548 (1133)
Q Consensus 537 Dg~I~lW~l~s~ 548 (1133)
||.|.+|.....
T Consensus 447 d~~l~~~~~~~~ 458 (928)
T PF04762_consen 447 DGSLSIYEWDLK 458 (928)
T ss_pred CCCEEEEEecCC
Confidence 999999986553
No 287
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.97 E-value=1.1e-05 Score=60.88 Aligned_cols=37 Identities=27% Similarity=0.604 Sum_probs=34.4
Q ss_pred ccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEe
Q 043350 253 KEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWP 289 (1133)
Q Consensus 253 ~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWd 289 (1133)
+++.++.+|.+.|++|+|+|++. |+||+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45678999999999999999999 99999999999997
No 288
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.95 E-value=0.0011 Score=77.96 Aligned_cols=267 Identities=12% Similarity=0.018 Sum_probs=141.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCC
Q 043350 223 GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKP 301 (1133)
Q Consensus 223 d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~ 301 (1133)
.+..|++++.+|.|..+|...+. .+....-......+... ++. ++.++.++.+..+|..++........
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~--------~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 133 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGK--------RLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKL 133 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCc--------EeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeecc
Confidence 36688888899999999976522 11111111111112222 344 88888999999999876433222211
Q ss_pred CCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEE-E
Q 043350 302 EEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRV-D 380 (1133)
Q Consensus 302 ~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l-~ 380 (1133)
.+.. ... + +..++.+ +....++.+..||..+|+.+..+.......... .
T Consensus 134 ~~~~-------------------~~~---p-------~v~~~~v-~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~ 183 (377)
T TIGR03300 134 SSEV-------------------LSP---P-------LVANGLV-VVRTNDGRLTALDAATGERLWTYSRVTPALTLRGS 183 (377)
T ss_pred Ccee-------------------ecC---C-------EEECCEE-EEECCCCeEEEEEcCCCceeeEEccCCCceeecCC
Confidence 1110 000 0 0011111 222457888999999998877765443221100 0
Q ss_pred eCC--CCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEe-cCCcccC-CCCCE-EEEEECCCCeEEE
Q 043350 381 TQS--VQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATR-GAGAFVD-DTKRT-EAMVLTADGMIWS 455 (1133)
Q Consensus 381 ~sp--~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~-p~g~~~~-h~~~V-~sl~~spdg~L~s 455 (1133)
.+| .+.. ++.++.++.+..++.+... .+|...+. +.+.... ....+ ....+ .++.++.
T Consensus 184 ~sp~~~~~~---------v~~~~~~g~v~ald~~tG~-------~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~ 246 (377)
T TIGR03300 184 ASPVIADGG---------VLVGFAGGKLVALDLQTGQ-------PLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYA 246 (377)
T ss_pred CCCEEECCE---------EEEECCCCEEEEEEccCCC-------EeeeeccccCCCCCchhhhhccCCccEE-ECCEEEE
Confidence 011 1123 5667777776533322111 11211111 0000000 00000 00011 2457888
Q ss_pred EecCCeEEEEeC-CCCeeEEEecCCcceeEEecCCCEEEEEecCCeEEEEeCC-CCcceeeecc-ccCeEEeeeccccee
Q 043350 456 GCTNGLLVQWDG-NGNRVSDILHHQCAVQCFCTYGSRMYVGYVSGYLQILDLD-GNLTASWIAH-SSPVLKLAVGVDHIY 532 (1133)
Q Consensus 456 gs~DG~I~vWd~-~g~~l~~~~~h~~~V~~fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~H-~~~V~~l~fs~~~L~ 532 (1133)
++.+|.+..||. +|+.+...... .......++..|++++.||.|+.+|.. |+.+-..... ...+.+....+..|+
T Consensus 247 ~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~ 324 (377)
T TIGR03300 247 VSYQGRVAALDLRSGRVLWKRDAS--SYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLV 324 (377)
T ss_pred EEcCCEEEEEECCCCcEEEeeccC--CccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEE
Confidence 889999999999 77777665521 122244567889999999999999986 5544222111 122233344588999
Q ss_pred eecccCCeeeccccCC
Q 043350 533 SLAAHGGIRGWTFTSP 548 (1133)
Q Consensus 533 S~s~Dg~I~lW~l~s~ 548 (1133)
.++.+|.|.+|+..+.
T Consensus 325 ~~~~~G~l~~~d~~tG 340 (377)
T TIGR03300 325 VGDFEGYLHWLSREDG 340 (377)
T ss_pred EEeCCCEEEEEECCCC
Confidence 9999999999986553
No 289
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=1.2e-05 Score=90.77 Aligned_cols=93 Identities=16% Similarity=0.297 Sum_probs=70.7
Q ss_pred eEEEEecCCeEEEEeC-CCCeeEEEec-----CCcceeE--EecCCCEEEEEecCCeEEEEeCC-CCcceeeeccccCeE
Q 043350 452 MIWSGCTNGLLVQWDG-NGNRVSDILH-----HQCAVQC--FCTYGSRMYVGYVSGYLQILDLD-GNLTASWIAHSSPVL 522 (1133)
Q Consensus 452 ~L~sgs~DG~I~vWd~-~g~~l~~~~~-----h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~H~~~V~ 522 (1133)
.++-++...+|+++|. .+.-..+++. ....+.| +.+.|++|++|-.+|+|.+.|.. |+.+..|+.-.....
T Consensus 843 liAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdll 922 (1034)
T KOG4190|consen 843 LIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLL 922 (1034)
T ss_pred eeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhh
Confidence 3444477899999998 4443333332 3344556 88899999999999999999986 678999998877777
Q ss_pred Eeeec-ccceeeecccCCeee-cc
Q 043350 523 KLAVG-VDHIYSLAAHGGIRG-WT 544 (1133)
Q Consensus 523 ~l~fs-~~~L~S~s~Dg~I~l-W~ 544 (1133)
.++.- .+.|++...|.++-+ |.
T Consensus 923 qlaapsdq~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 923 QLAAPSDQALAQSALDHSLAVNWH 946 (1034)
T ss_pred hhcCchhHHHHhhcccceeEeeeh
Confidence 77665 778888888888888 86
No 290
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.92 E-value=0.0061 Score=69.77 Aligned_cols=258 Identities=9% Similarity=0.099 Sum_probs=135.8
Q ss_pred CeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEE-e---------CCCcEEEEeCCCCcee--eEeC
Q 043350 234 GKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSG-G---------EGGVIKIWPWESIEKS--LSLK 300 (1133)
Q Consensus 234 g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sg-s---------~DgtI~iWdl~~~~~~--l~~~ 300 (1133)
++|.+.|.... +.+..+..-..+- .+ ++|+|+ |+.+ + .+..|.+||..+.... +...
T Consensus 27 ~~v~ViD~~~~--------~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p 96 (352)
T TIGR02658 27 TQVYTIDGEAG--------RVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP 96 (352)
T ss_pred ceEEEEECCCC--------EEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC
Confidence 88999998861 2223333222222 24 899999 5544 4 5899999999884322 3332
Q ss_pred CCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCC-ceEEEecC-CCceeEeecCCCceeEEEecCCcceeE
Q 043350 301 PEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHA-RARVWCAQ-PLSFSLWDARSKELLKVFNIEGHIENR 378 (1133)
Q Consensus 301 ~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~-~i~vwss~-d~~I~lWD~~tg~~l~~~~~h~~~v~~ 378 (1133)
++... .++ +.+ ..+.++.|+ .+.+.+-. +..|.+.|+.+++.+..+...... .-
T Consensus 97 ~~p~~-~~~---------------------~~~-~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~-~v 152 (352)
T TIGR02658 97 EGPRF-LVG---------------------TYP-WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCY-HI 152 (352)
T ss_pred CCchh-hcc---------------------Ccc-ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCc-EE
Confidence 22111 000 111 122233333 23334444 899999999999999988763311 11
Q ss_pred EEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCc--eEEEE-EecCCcccCCCCCEEEEEECC-CC-eE
Q 043350 379 VDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADA--VRRVA-TRGAGAFVDDTKRTEAMVLTA-DG-MI 453 (1133)
Q Consensus 379 l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~--V~~v~-~~p~g~~~~h~~~V~sl~~sp-dg-~L 453 (1133)
...+.+..+ .-+.||... ..-.+..+. +.... |.++.... ...+ .+++ +| .+
T Consensus 153 y~t~e~~~~-----------~~~~Dg~~~-------~v~~d~~g~~~~~~~~vf~~~~~~v-~~rP----~~~~~dg~~~ 209 (352)
T TIGR02658 153 FPTANDTFF-----------MHCRDGSLA-------KVGYGTKGNPKIKPTEVFHPEDEYL-INHP----AYSNKSGRLV 209 (352)
T ss_pred EEecCCccE-----------EEeecCceE-------EEEecCCCceEEeeeeeecCCcccc-ccCC----ceEcCCCcEE
Confidence 122222211 223344332 100000000 11111 11100000 0111 2345 67 77
Q ss_pred EEEecCCeEEEEeCCCC------eeEEEec-------CCcc--eeEEecCCCEEEEEe----------cCCeEEEEeCCC
Q 043350 454 WSGCTNGLLVQWDGNGN------RVSDILH-------HQCA--VQCFCTYGSRMYVGY----------VSGYLQILDLDG 508 (1133)
Q Consensus 454 ~sgs~DG~I~vWd~~g~------~l~~~~~-------h~~~--V~~fs~dg~~Lasgs----------~DG~I~vwd~~g 508 (1133)
+...+ |+|.+-|+.+. .+..+.. .... ...++++|++|++.. ..+.|.++|...
T Consensus 210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t 288 (352)
T TIGR02658 210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT 288 (352)
T ss_pred EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence 77666 99999997442 1222111 1111 245999999988853 225799999875
Q ss_pred -CcceeeeccccCeEEeeec--cc-ceeeec-ccCCeeeccccCCCC
Q 043350 509 -NLTASWIAHSSPVLKLAVG--VD-HIYSLA-AHGGIRGWTFTSPSP 550 (1133)
Q Consensus 509 -~~l~~~~~H~~~V~~l~fs--~~-~L~S~s-~Dg~I~lW~l~s~~~ 550 (1133)
+.+..+.. ...+..|+++ ++ .|+... .++.|.+.|+.+...
T Consensus 289 ~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 289 GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 44554442 4478899999 66 666555 678899999776543
No 291
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.91 E-value=0.012 Score=65.32 Aligned_cols=284 Identities=11% Similarity=0.131 Sum_probs=151.8
Q ss_pred CCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCC---CeEEEEeCCCCCCCCCC
Q 043350 174 ECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKD---GKIRSWKMDQTLDDANN 250 (1133)
Q Consensus 174 Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~D---g~V~vWd~~~~~~~~~~ 250 (1133)
++.|.+|++++....+... ....+.+..+-|+|+|+++.|.++-.+ |.|..+.++....
T Consensus 15 s~gI~v~~ld~~~g~l~~~--------------~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G---- 76 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLL--------------QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDG---- 76 (346)
T ss_pred CCceEEEEEeCcccccchh--------------hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCC----
Confidence 6789999998643332211 133455677899999999999988765 7788888875211
Q ss_pred CcccccccccCCCCeEEEEEeeCCc-EEEEeC-CCcEEEEeCCC-C----ceeeEeCCCCceEEEEeecceEEEccCce-
Q 043350 251 PFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGE-GGVIKIWPWES-I----EKSLSLKPEEKHMAALLVERSFIDLRAQV- 322 (1133)
Q Consensus 251 ~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~-DgtI~iWdl~~-~----~~~l~~~~~~~~l~s~~~d~s~~d~~~~~- 322 (1133)
.+..+-....-..+-+.++++++|+ |+++.. -|.|.++.++. + ...+..+....- ..+ +.
T Consensus 77 ~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p-----------~~r-Q~~ 144 (346)
T COG2706 77 RLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGP-----------HER-QES 144 (346)
T ss_pred eEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCC-----------Ccc-ccC
Confidence 1111111111122338899999999 777764 57899998865 1 111111111100 000 00
Q ss_pred eeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEe---cCCcceeEEEeCCCCCccccccceEEEEe
Q 043350 323 TVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFN---IEGHIENRVDTQSVQDQPVEDEMKVKFVS 399 (1133)
Q Consensus 323 ~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~---~h~~~v~~l~~sp~g~~~~e~e~~v~las 399 (1133)
.-..+.. ..++..+++..| ..--.|.+|++..|.+...-. ..+..-..+.|+|++++. -+.
T Consensus 145 ~h~H~a~-~tP~~~~l~v~D-------LG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~a--------Y~v 208 (346)
T COG2706 145 PHVHSAN-FTPDGRYLVVPD-------LGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYA--------YLV 208 (346)
T ss_pred Cccceee-eCCCCCEEEEee-------cCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEE--------EEE
Confidence 0000000 234443333221 445567788888776543211 233446689999999871 223
Q ss_pred eCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEec-CCeEEEEeC--CCCeeEEE
Q 043350 400 SNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCT-NGLLVQWDG--NGNRVSDI 475 (1133)
Q Consensus 400 gs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~-DG~I~vWd~--~g~~l~~~ 475 (1133)
.-.+++|..|.-... .+.-..+..+..-|+. | ....+..+|.+++|| +|+++.. ...|.+|.+ .+..+..+
T Consensus 209 ~EL~stV~v~~y~~~---~g~~~~lQ~i~tlP~d-F-~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~ 283 (346)
T COG2706 209 NELNSTVDVLEYNPA---VGKFEELQTIDTLPED-F-TGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELV 283 (346)
T ss_pred eccCCEEEEEEEcCC---CceEEEeeeeccCccc-c-CCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEE
Confidence 333444431110000 0000112222333322 2 234567788899999 6655432 236777766 44444443
Q ss_pred ec---CCcceeE--EecCCCEEEEEec-CCeEEEEeCCC
Q 043350 476 LH---HQCAVQC--FCTYGSRMYVGYV-SGYLQILDLDG 508 (1133)
Q Consensus 476 ~~---h~~~V~~--fs~dg~~Lasgs~-DG~I~vwd~~g 508 (1133)
.. +...-.. |++.|++|+++.. +..|.+|.++.
T Consensus 284 ~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 284 GITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred EEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 32 2221222 8999999999885 45799998863
No 292
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.91 E-value=0.00073 Score=71.17 Aligned_cols=142 Identities=9% Similarity=-0.008 Sum_probs=96.4
Q ss_pred CEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE--eC--CCCeEEecCCcEEEeeCCCCCCcCcC
Q 043350 116 EFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA--CT--DTQLWAGQECGVRFWNLEDSYEPGAG 191 (1133)
Q Consensus 116 ~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~--s~--dg~llas~Dg~VrvWdl~~~~~~~~g 191 (1133)
.+||.||..|.+.+|...+ .+-.......|.. .|+-+. |. -.-++++.|.++++.+++.......
T Consensus 85 ~~la~gG~~g~fd~~~~~t---n~~h~~~cd~snn-------~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~- 153 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNT---NDGHLYQCDVSNN-------DVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA- 153 (344)
T ss_pred cEEEeccccceeeeecccC---cccceeeeccccc-------chhhhhhhcccccceeeccCCcceeEEEEecCcccce-
Confidence 4789999999999998763 1111222333333 333333 22 2223339999999999887433221
Q ss_pred CCccccCCCCCCCceeeccCCC--CeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCccccc-ccccCCCCeEEE
Q 043350 192 IGGRVRRGDEDAAPFYESANTS--PTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGL-SWQAHRGPVLAM 268 (1133)
Q Consensus 192 h~~~v~~g~~~~~~~~~~~h~s--~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~-~l~gH~~~V~sl 268 (1133)
.|.. .+.+++++++++++++.+....|-.|.++.... .... ....-++.=.+.
T Consensus 154 ------------------~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se------y~~~~~~a~t~D~gF~~ 209 (344)
T KOG4532|consen 154 ------------------VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE------YIENIYEAPTSDHGFYN 209 (344)
T ss_pred ------------------eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccc------eeeeeEecccCCCceee
Confidence 2332 278899999999999999999999999985221 1112 233335556788
Q ss_pred EEeeCCc-EEEEeCCCcEEEEeCCC
Q 043350 269 IFSSQGD-LWSGGEGGVIKIWPWES 292 (1133)
Q Consensus 269 ~fsp~g~-L~Sgs~DgtI~iWdl~~ 292 (1133)
.|+.... +++++.||++.|||++.
T Consensus 210 S~s~~~~~FAv~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 210 SFSENDLQFAVVFQDGTCAIYDVRN 234 (344)
T ss_pred eeccCcceEEEEecCCcEEEEEecc
Confidence 9998877 99999999999999987
No 293
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=97.86 E-value=0.0006 Score=75.35 Aligned_cols=128 Identities=16% Similarity=0.106 Sum_probs=62.8
Q ss_pred ceEEEEEEcCCCCCC---chhhhhhhcCCCCCccEEEEeeeecccccchhhhhhhhhhhcCCCCcchhhHHHHHhhhcCC
Q 043350 573 RILVGTWNVGQGRAS---HESLLSWLGSVSSDVGIVAVGLQEVEMGAGFLAMSAAKETVGLEGSAIGQWWQDTIGKALDE 649 (1133)
Q Consensus 573 rI~v~TWNv~~~~~~---~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~ 649 (1133)
.+.++|||+-.--.. .....+.+...-..+|| ||+||+.-+. .... +.-.++|.+..+
T Consensus 17 ~l~I~SfNIr~fgd~k~~~~~r~~~i~~il~~~DI--iglQEV~d~q----~~~l------------~~ll~~Ln~~~~- 77 (276)
T smart00476 17 SLRICAFNIQSFGDSKMSNATLMSIIVKILSRYDI--ALVQEVRDSD----LSAV------------PKLMDQLNSDSP- 77 (276)
T ss_pred cEEEEEEECcccCCccccHHHHHHHHHHHhccCCE--EEEEEeecch----hHHH------------HHHHHHHhhcCC-
Confidence 578899999621111 11122223222235676 6899984211 0000 112233443332
Q ss_pred CCcEEEEeeeecc----eEEEEEEEecccccccCceeecccccccccccccceeEEEEEEEcCe---EEEEEecccccC
Q 043350 650 GTTFERMGSRQLA----GLLISFWVRKNLRTHVGDVDAAAVPCGFGRAIGNKGGVGLRIRVYDR---TICFVNCHLAAH 721 (1133)
Q Consensus 650 ~~~y~~v~~~~l~----g~~l~v~~~~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~~r~~~~~~---~~~fvn~Hlaa~ 721 (1133)
..|..+.+..++ |-...+|-|++....+..-...-..-|... .=.-=...++|+...+ .|.+||+|+...
T Consensus 78 -~~Y~~v~s~r~gr~~~~E~~a~~Yr~drv~v~~~~~f~d~~~~~~~-~F~ReP~~~~F~~~~~~~~~F~li~~H~~p~ 154 (276)
T smart00476 78 -NTYSYVSSEPLGRNSYKEQYLFLYRSDLVSVLDSYLYDDGCECGND-VFSREPFVVKFSSPSTAVKEFVIVPLHTTPE 154 (276)
T ss_pred -CCceEEecCCCCCCCCCEEEEEEEecceEEEcccceecCCCCCccc-cccccceEEEEEeCCCCCccEEEEEecCChH
Confidence 345667776664 355666777775443322111100001000 0123455677777665 799999999764
No 294
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.85 E-value=0.0011 Score=70.91 Aligned_cols=180 Identities=16% Similarity=0.162 Sum_probs=106.7
Q ss_pred CCCCeEEEEEeC---CCC-EEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcE
Q 043350 211 NTSPTMCLMVDC---GNR-LVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVI 285 (1133)
Q Consensus 211 h~s~V~~la~sp---d~~-~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI 285 (1133)
.++.+..+.|.. ++. .++-+..+|.|.++..+.... ...++.+...+--...-.++.|++.+. ++++-.+|.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~s--s~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~ 145 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDES--SVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSI 145 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeecccee--eeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcE
Confidence 445666666654 455 667788889999998775221 000111111111111345788888888 9999889988
Q ss_pred EEEeCCCC--ce--eeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecC
Q 043350 286 KIWPWESI--EK--SLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDAR 361 (1133)
Q Consensus 286 ~iWdl~~~--~~--~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~ 361 (1133)
.+-+.... .+ .+..|.-+.+.+.. ...+..++.++ +.|+.+.-||+|
T Consensus 146 ~~v~~t~~~le~vq~wk~He~E~Wta~f---------------------~~~~pnlvytG--------gDD~~l~~~D~R 196 (339)
T KOG0280|consen 146 SGVYETEMVLEKVQTWKVHEFEAWTAKF---------------------SDKEPNLVYTG--------GDDGSLSCWDIR 196 (339)
T ss_pred EEEecceeeeeecccccccceeeeeeec---------------------ccCCCceEEec--------CCCceEEEEEec
Confidence 85444321 11 22223333331111 22233455666 789999999999
Q ss_pred -CCceeEE-EecCCcceeEEEeCCC-CCccccccceEEEEeeCCCCccccccccccce-ee--ccCCceEEEEEe
Q 043350 362 -SKELLKV-FNIEGHIENRVDTQSV-QDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNA-IM--GAADAVRRVATR 430 (1133)
Q Consensus 362 -tg~~l~~-~~~h~~~v~~l~~sp~-g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~-~~--~~~~~V~~v~~~ 430 (1133)
.++.+.. .+.|...|.++.-+|. +.+ |++|+.|..|+.|+.|.... +. .-.+.||++..+
T Consensus 197 ~p~~~i~~n~kvH~~GV~SI~ss~~~~~~---------I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~ 262 (339)
T KOG0280|consen 197 IPKTFIWHNSKVHTSGVVSIYSSPPKPTY---------IATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHH 262 (339)
T ss_pred CCcceeeecceeeecceEEEecCCCCCce---------EEEeccccceeeeehhcccCccccCccccceEEEEec
Confidence 5555543 5677888888888875 556 99999999999887763322 11 112455555555
No 295
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=97.85 E-value=0.00024 Score=66.66 Aligned_cols=91 Identities=20% Similarity=0.323 Sum_probs=66.6
Q ss_pred EEecCeEEecccceEEEEEEECCccceEEEEEeecCCCcccCCCCCCccccCCCcCCCCceEEecCceEECCCCeEEEEE
Q 043350 958 IVSTESIILQNQDTCTLRITNKSAQEKAIFKIICDGQSTVKDDGDASDYRLRGSFGFPRWLEVTPAAGVIKPDSYIEVSV 1037 (1133)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~i~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~p~~~~~~p~~~~~~~~ 1037 (1133)
.|+++++..+....+.|+|+|+|.. ++.|++... + .....++++|..|.|.||+++++.+
T Consensus 10 ~ldFG~v~~g~~~~~~v~l~N~s~~-p~~f~v~~~-----~--------------~~~~~~~v~~~~g~l~PG~~~~~~V 69 (102)
T PF14874_consen 10 ELDFGNVFVGQTYSRTVTLTNTSSI-PARFRVRQP-----E--------------SLSSFFSVEPPSGFLAPGESVELEV 69 (102)
T ss_pred EEEeeEEccCCEEEEEEEEEECCCC-CEEEEEEeC-----C--------------cCCCCEEEECCCCEECCCCEEEEEE
Confidence 4555555556677889999999999 899998621 0 0236789999999999999999999
Q ss_pred EEeeccchhhhhcCCCCCCcccccCCceeEEEEEEEccccCCCeeeEEEeeee
Q 043350 1038 HHEEFHTLEEFVDGIPQNWWCEDTRDKEVMLSLVVQGCCSNDTRKHQIRVRHC 1090 (1133)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 1090 (1133)
++.- . ....+.+..|++..+| + .-.|+|++|
T Consensus 70 ~~~~---~-------------~~~g~~~~~l~i~~e~-----~-~~~i~v~a~ 100 (102)
T PF14874_consen 70 TFSP---T-------------KPLGDYEGSLVITTEG-----G-SFEIPVKAE 100 (102)
T ss_pred EEEe---C-------------CCCceEEEEEEEEECC-----e-EEEEEEEEE
Confidence 9641 0 1122567777777766 4 688898876
No 296
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.83 E-value=0.0045 Score=81.52 Aligned_cols=262 Identities=12% Similarity=0.114 Sum_probs=138.3
Q ss_pred EEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccc--------------cCCCCeEEEEEeeCCc-EEEE
Q 043350 216 MCLMVDCG-NRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQ--------------AHRGPVLAMIFSSQGD-LWSG 279 (1133)
Q Consensus 216 ~~la~spd-~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~--------------gH~~~V~sl~fsp~g~-L~Sg 279 (1133)
..+++++. +.+.++-+.++.|++||..+ ..+..+. ++-..-.+|++.++++ |+.+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G---------~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVa 641 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG---------NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVA 641 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC---------CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEE
Confidence 46788874 66777777889999999875 1111111 1122357899999877 5554
Q ss_pred -eCCCcEEEEeCCCC-ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeE
Q 043350 280 -GEGGVIKIWPWESI-EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSL 357 (1133)
Q Consensus 280 -s~DgtI~iWdl~~~-~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~l 357 (1133)
...+.|+++|+.+. +..+... +.. ..+..... .........+....+...++.+.+-...++.|.+
T Consensus 642 Dt~n~~Ir~id~~~~~V~tlag~--G~~---------g~~~~gg~-~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v 709 (1057)
T PLN02919 642 DTENHALREIDFVNETVRTLAGN--GTK---------GSDYQGGK-KGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWE 709 (1057)
T ss_pred eCCCceEEEEecCCCEEEEEecc--Ccc---------cCCCCCCh-hhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEE
Confidence 45678999988653 2222111 100 00000000 0000001112122222223444444466777888
Q ss_pred eecCCCceeEEEecCC---------------cceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccc--eeecc
Q 043350 358 WDARSKELLKVFNIEG---------------HIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRN--AIMGA 420 (1133)
Q Consensus 358 WD~~tg~~l~~~~~h~---------------~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~--~~~~~ 420 (1133)
||..++... .+.+.+ .....++++|++.. + +++-+.++.|+.++..... .+.+
T Consensus 710 ~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~-------L-YVADs~n~~Irv~D~~tg~~~~~~g- 779 (1057)
T PLN02919 710 YNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKE-------L-YIADSESSSIRALDLKTGGSRLLAG- 779 (1057)
T ss_pred EECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCE-------E-EEEECCCCeEEEEECCCCcEEEEEe-
Confidence 887766432 222111 12347899998873 0 5566667777744422111 1110
Q ss_pred CCceE---EEEEec-CCc-ccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCCCCeeEEEecCC--------------c
Q 043350 421 ADAVR---RVATRG-AGA-FVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGNGNRVSDILHHQ--------------C 480 (1133)
Q Consensus 421 ~~~V~---~v~~~p-~g~-~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g~~l~~~~~h~--------------~ 480 (1133)
...+. ...+.. +|. .......-..++++++| .+++-..+++|++||..+..+.++.+.. .
T Consensus 780 g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~ 859 (1057)
T PLN02919 780 GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLS 859 (1057)
T ss_pred cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccC
Confidence 00000 000100 000 00011123578899999 7777788999999999765555544311 0
Q ss_pred cee--EEecCCCEEEEEecCCeEEEEeCCC
Q 043350 481 AVQ--CFCTYGSRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 481 ~V~--~fs~dg~~Lasgs~DG~I~vwd~~g 508 (1133)
... +++++|+.+++-+.+++|++||+..
T Consensus 860 ~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 860 EPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred CceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 122 3788898888888889999999875
No 297
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.83 E-value=0.0017 Score=77.47 Aligned_cols=155 Identities=9% Similarity=-0.097 Sum_probs=83.5
Q ss_pred ccccCCCCCEE---EEecCCCe--EEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE-ec--CC---
Q 043350 108 HKPFQPMVEFI---GSGGGTGI--FKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA-GQ--EC--- 175 (1133)
Q Consensus 108 ~~~~~p~g~~l---asgs~dg~--irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla-s~--Dg--- 175 (1133)
.+.|+|||+.+ .+...+|. |.+.++.+ ++. ..+...++ .....+ +|||+.|+ .. +|
T Consensus 189 sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~---g~~--~~lt~~~g-------~~~~p~wSPDG~~Laf~s~~~g~~d 256 (428)
T PRK01029 189 TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLEN---PAG--KKILALQG-------NQLMPTFSPRKKLLAFISDRYGNPD 256 (428)
T ss_pred cceEccCCCceEEEEEEccCCCceEEEEECCC---CCc--eEeecCCC-------CccceEECCCCCEEEEEECCCCCcc
Confidence 47899999753 34544444 44445542 222 22222222 233345 99998888 33 22
Q ss_pred -cEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCCCCCCCcc
Q 043350 176 -GVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGH-KDGKIRSWKMDQTLDDANNPFK 253 (1133)
Q Consensus 176 -~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs-~Dg~V~vWd~~~~~~~~~~~~~ 253 (1133)
.+.+|++...... .. ..+...+.+.....+|+|||+.|+..+ .+|...||.+..... . .
T Consensus 257 i~~~~~~~~~g~~g---~~-----------~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~---g--~ 317 (428)
T PRK01029 257 LFIQSFSLETGAIG---KP-----------RRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE---G--Q 317 (428)
T ss_pred eeEEEeecccCCCC---cc-----------eEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc---c--c
Confidence 2334565431000 00 011112222345679999999877665 567666665432100 0 1
Q ss_pred cccccccCCCCeEEEEEeeCCc-EEEEeCC---CcEEEEeCCCC
Q 043350 254 EGLSWQAHRGPVLAMIFSSQGD-LWSGGEG---GVIKIWPWESI 293 (1133)
Q Consensus 254 ~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~D---gtI~iWdl~~~ 293 (1133)
....+..+...+....|+|+|+ |+..+.+ ..|.+||+.+.
T Consensus 318 ~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g 361 (428)
T PRK01029 318 SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG 361 (428)
T ss_pred ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 1223444455678899999999 7665543 36888998764
No 298
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.80 E-value=0.018 Score=74.71 Aligned_cols=318 Identities=12% Similarity=0.087 Sum_probs=169.4
Q ss_pred cccccCCCCCEEEEecC------CCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE-----ecC
Q 043350 107 QHKPFQPMVEFIGSGGG------TGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA-----GQE 174 (1133)
Q Consensus 107 ~~~~~~p~g~~lasgs~------dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla-----s~D 174 (1133)
..++...||+|+|+.+- -..+|||+++ |.. ..+-++-.+ --.+++ .|.|.++| ...
T Consensus 213 ~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re----G~L-~stSE~v~g-------Le~~l~WrPsG~lIA~~q~~~~~ 280 (928)
T PF04762_consen 213 VRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE----GEL-QSTSEPVDG-------LEGALSWRPSGNLIASSQRLPDR 280 (928)
T ss_pred eEEEECCCCcEEEEEEEEcCCCceeEEEEECCC----ceE-EeccccCCC-------ccCCccCCCCCCEEEEEEEcCCC
Confidence 35778999999998764 2589999998 543 222222222 223456 88999999 223
Q ss_pred CcEEEeeCCCCCCcCcCCCccccCCCCCCCceeec--cCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCc
Q 043350 175 CGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYES--ANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPF 252 (1133)
Q Consensus 175 g~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~--~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~ 252 (1133)
..|.+|.-+++. |+ .|... .....|..|+|++++.+||..-.|. |.+|-....- +
T Consensus 281 ~~VvFfErNGLr-----hg-----------eF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH------W 337 (928)
T PF04762_consen 281 HDVVFFERNGLR-----HG-----------EFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH------W 337 (928)
T ss_pred cEEEEEecCCcE-----ee-----------eEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE------E
Confidence 578888776632 22 22332 2345789999999999999987765 9999987511 1
Q ss_pred cccccccc-CCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeecccc
Q 043350 253 KEGLSWQA-HRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACS 329 (1133)
Q Consensus 253 ~~~~~l~g-H~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~ 329 (1133)
...+.+.- ....+..+.|+|... |.....+|.+..+++. |+... +-..
T Consensus 338 YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~------------------------~~v~~-----s~~~ 388 (928)
T PF04762_consen 338 YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA------------------------WDVSR-----SPGS 388 (928)
T ss_pred EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEE------------------------EEEEe-----cCCC
Confidence 22223332 233455699999755 7777777887776652 11110 0000
Q ss_pred CCCCCeEEEEecCCceEEEecCCCceeEeecCCCc---ee--EEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCC
Q 043350 330 ISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKE---LL--KVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKE 404 (1133)
Q Consensus 330 ~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~---~l--~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg 404 (1133)
.+.....+.+.+. ..+.+-.++... ++ ..+.. ...|..++|++++.. +++-..||
T Consensus 389 ~~~D~g~vaVIDG----------~~lllTpf~~a~VPPPMs~~~l~~-~~~v~~vaf~~~~~~---------~avl~~d~ 448 (928)
T PF04762_consen 389 SPNDNGTVAVIDG----------NKLLLTPFRRAVVPPPMSSYELEL-PSPVNDVAFSPSNSR---------FAVLTSDG 448 (928)
T ss_pred CccCceEEEEEeC----------CeEEEecccccCCCchHhceEEcC-CCCcEEEEEeCCCCe---------EEEEECCC
Confidence 0111122222221 122222222211 11 23332 356889999999887 78888888
Q ss_pred ccc--cccccccceeeccCCceEEEEEe--cCCcccCCCCCEEEEEECCCC-eEEEEecC---CeEEEEeCC-C---Cee
Q 043350 405 KPH--GFLQRSRNAIMGAADAVRRVATR--GAGAFVDDTKRTEAMVLTADG-MIWSGCTN---GLLVQWDGN-G---NRV 472 (1133)
Q Consensus 405 ~i~--~~~~~~~~~~~~~~~~V~~v~~~--p~g~~~~h~~~V~sl~~spdg-~L~sgs~D---G~I~vWd~~-g---~~l 472 (1133)
++. .+....... .........+... ...........+..++|..+. .++....+ ..+.+++.. . ..+
T Consensus 449 ~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 527 (928)
T PF04762_consen 449 SLSIYEWDLKNMWS-VKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASV 527 (928)
T ss_pred CEEEEEecCCCccc-ccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeE
Confidence 776 222111110 0000000001100 000011223456777777777 44444333 577888772 2 122
Q ss_pred EEEecCCcceeEE--ecCCCEEEEEecCCeEEEEeCCCC
Q 043350 473 SDILHHQCAVQCF--CTYGSRMYVGYVSGYLQILDLDGN 509 (1133)
Q Consensus 473 ~~~~~h~~~V~~f--s~dg~~Lasgs~DG~I~vwd~~g~ 509 (1133)
.....-...+..+ .++...++.-..+|.|..++..+.
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~ 566 (928)
T PF04762_consen 528 ESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGE 566 (928)
T ss_pred EEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCC
Confidence 3333333444443 223333677778999887777653
No 299
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.79 E-value=0.004 Score=71.20 Aligned_cols=110 Identities=12% Similarity=0.119 Sum_probs=75.5
Q ss_pred CCCCCEEEEEECCCC---eEEEEecCCeEEEEeCCCCeeEEEecCCcceeEEecCCCEEEEEec---CCeEEEEeCCCCc
Q 043350 437 DDTKRTEAMVLTADG---MIWSGCTNGLLVQWDGNGNRVSDILHHQCAVQCFCTYGSRMYVGYV---SGYLQILDLDGNL 510 (1133)
Q Consensus 437 ~h~~~V~sl~~spdg---~L~sgs~DG~I~vWd~~g~~l~~~~~h~~~V~~fs~dg~~Lasgs~---DG~I~vwd~~g~~ 510 (1133)
+..++|...+|.|.+ -+++|-.+..+.++|+.|+....+......-..|+|.+++++.++- -|.|-+||..++.
T Consensus 272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf 351 (561)
T COG5354 272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF 351 (561)
T ss_pred cccccceeeeecccCCceeEEecccccceeecccccceEEecCCcccccccccCcccEEEEecCCccccceEEeccCCce
Confidence 457889999998887 5566678999999999998655554433333339999999998774 5789999998854
Q ss_pred --ceeeeccccCeEEeeec--ccceeee------cccCCeeeccccCC
Q 043350 511 --TASWIAHSSPVLKLAVG--VDHIYSL------AAHGGIRGWTFTSP 548 (1133)
Q Consensus 511 --l~~~~~H~~~V~~l~fs--~~~L~S~------s~Dg~I~lW~l~s~ 548 (1133)
...+.+-... -+.|+ ++++.+. -.|..|.+|++...
T Consensus 352 ~~~~~~~~~n~s--~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 352 KVAGAFNGLNTS--YCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred EEEEEeecCCce--EeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 3344444432 23444 5554443 23778888987653
No 300
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.037 Score=61.40 Aligned_cols=266 Identities=11% Similarity=0.130 Sum_probs=141.1
Q ss_pred CCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE-----ecCCcEEEeeCCCC--CCcCcCCCcc
Q 043350 124 TGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA-----GQECGVRFWNLEDS--YEPGAGIGGR 195 (1133)
Q Consensus 124 dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla-----s~Dg~VrvWdl~~~--~~~~~gh~~~ 195 (1133)
+.-|.+|++++. .|+.-...+-.+.. ..+-|+ .++++.|- +.+|.|-.|.++.. ..++-.+.
T Consensus 15 s~gI~v~~ld~~-~g~l~~~~~v~~~~-------nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~-- 84 (346)
T COG2706 15 SQGIYVFNLDTK-TGELSLLQLVAELG-------NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ-- 84 (346)
T ss_pred CCceEEEEEeCc-ccccchhhhccccC-------CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc--
Confidence 355788887631 13322333333444 445556 67664443 44788888887752 11111111
Q ss_pred ccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCC-CeEEEEeCCCCCCCCCCCcccccccccCCCC----------
Q 043350 196 VRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKD-GKIRSWKMDQTLDDANNPFKEGLSWQAHRGP---------- 264 (1133)
Q Consensus 196 v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~D-g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~---------- 264 (1133)
.. ..++-+.+++++++++|+++... |.|.++.++... ..........|.+.
T Consensus 85 -----------~~--~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG-----~l~~~v~~~~h~g~~p~~rQ~~~h 146 (346)
T COG2706 85 -----------TL--PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADG-----SLQPVVQVVKHTGSGPHERQESPH 146 (346)
T ss_pred -----------cc--CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCC-----ccccceeeeecCCCCCCccccCCc
Confidence 11 12244889999999999998764 899999986521 11233333445444
Q ss_pred eEEEEEeeCCc-EEEEeC-CCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecC
Q 043350 265 VLAMIFSSQGD-LWSGGE-GGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDH 342 (1133)
Q Consensus 265 V~sl~fsp~g~-L~Sgs~-DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d 342 (1133)
+.+..|.|+++ |+++.. --.|.+|++..+... +... ..+.....-..+.+|++....+++..
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~----~~~~-----------~~v~~G~GPRHi~FHpn~k~aY~v~E- 210 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLT----PADP-----------AEVKPGAGPRHIVFHPNGKYAYLVNE- 210 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCccc----cccc-----------cccCCCCCcceEEEcCCCcEEEEEec-
Confidence 88999999999 777753 235788888752110 0000 00000111112333455555555554
Q ss_pred CceEEEecCCCceeEeecCCC-ceeEEEec---------CCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccccc
Q 043350 343 ARARVWCAQPLSFSLWDARSK-ELLKVFNI---------EGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQR 412 (1133)
Q Consensus 343 ~~i~vwss~d~~I~lWD~~tg-~~l~~~~~---------h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~ 412 (1133)
-+++|.+|..... ..+..++. .......+.++++|++ |.++..--..
T Consensus 211 --------L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrF---------LYasNRg~ds------ 267 (346)
T COG2706 211 --------LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRF---------LYASNRGHDS------ 267 (346)
T ss_pred --------cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCE---------EEEecCCCCe------
Confidence 4567777776642 22222221 1234568899999998 6555332211
Q ss_pred ccceeeccCCceEEEEEecCCc-------ccCCCCCEEEEEECCCC-eEEEEec-CCeEEEEeC
Q 043350 413 SRNAIMGAADAVRRVATRGAGA-------FVDDTKRTEAMVLTADG-MIWSGCT-NGLLVQWDG 467 (1133)
Q Consensus 413 ~~~~~~~~~~~V~~v~~~p~g~-------~~~h~~~V~sl~~spdg-~L~sgs~-DG~I~vWd~ 467 (1133)
+......|++. ...+...-....+++.| +|++++. +..|.+|..
T Consensus 268 -----------I~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 268 -----------IAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFER 320 (346)
T ss_pred -----------EEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence 11112222211 11122224556688888 6665554 456888877
No 301
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.74 E-value=0.0022 Score=76.23 Aligned_cols=337 Identities=16% Similarity=0.144 Sum_probs=179.8
Q ss_pred EeCCCCeEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCC------------CCEEEE
Q 043350 163 ACTDTQLWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCG------------NRLVWT 229 (1133)
Q Consensus 163 ~s~dg~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd------------~~~LaS 229 (1133)
.-..+-++| +....|.|-|....... .....|.+.|+.+.|.|. .-+||+
T Consensus 22 Dw~~~GLiAygshslV~VVDs~s~q~i-----------------qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAs 84 (1062)
T KOG1912|consen 22 DWSPSGLIAYGSHSLVSVVDSRSLQLI-----------------QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIAS 84 (1062)
T ss_pred ccCccceEEEecCceEEEEehhhhhhh-----------------hccccCccceeEEEeccCCCchhccCccccceeEEe
Confidence 344556778 88888999887652111 123356677888888761 125788
Q ss_pred EeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeC---C-c-EEEEeCCCcEEEEeCCCCce---------
Q 043350 230 GHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQ---G-D-LWSGGEGGVIKIWPWESIEK--------- 295 (1133)
Q Consensus 230 gs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~---g-~-L~Sgs~DgtI~iWdl~~~~~--------- 295 (1133)
+...|.|.+||.... ..+..+..|..+|..++|-+. . . |+.-..-.+|.+|+..++.+
T Consensus 85 aD~~GrIil~d~~~~--------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~ 156 (1062)
T KOG1912|consen 85 ADISGRIILVDFVLA--------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE 156 (1062)
T ss_pred ccccCcEEEEEehhh--------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc
Confidence 888899999998751 223456677899999999875 3 2 67677778999998877522
Q ss_pred ---eeEeCC-CCceEEEEeecceEEEcc----------Cce-eeeccccC-----------------CCCCe------EE
Q 043350 296 ---SLSLKP-EEKHMAALLVERSFIDLR----------AQV-TVNGACSI-----------------SSTEI------KC 337 (1133)
Q Consensus 296 ---~l~~~~-~~~~l~s~~~d~s~~d~~----------~~~-~v~~~~~~-----------------~~~~~------~~ 337 (1133)
.+.+.| +.+++...+..+-++... .+. .+..-+.. +..-. .+
T Consensus 157 iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~f 236 (1062)
T KOG1912|consen 157 ILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQF 236 (1062)
T ss_pred ceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhh
Confidence 233333 223333332222211110 000 00000000 00000 00
Q ss_pred EEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccce-
Q 043350 338 MLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNA- 416 (1133)
Q Consensus 338 l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~- 416 (1133)
..+.+-+..++-.-...+.++|+.-..++.+.....+.+.-+.+-|+++. .. +.+.-.+|.+..|..+....
T Consensus 237 af~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~r------d~-LfclH~nG~ltirvrk~~~~~ 309 (1062)
T KOG1912|consen 237 AFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRR------DA-LFCLHSNGRLTIRVRKEEPTE 309 (1062)
T ss_pred hcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCc------ce-EEEEecCCeEEEEEeeccCcc
Confidence 11222223333345677888999888888888777776666777776653 11 77888888775222221111
Q ss_pred ee--------ccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeCC-CCe----------------
Q 043350 417 IM--------GAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGN-GNR---------------- 471 (1133)
Q Consensus 417 ~~--------~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~-g~~---------------- 471 (1133)
+. .....+..+... ....-.+...+.+....++.--.+|.+.+|.+. |..
T Consensus 310 f~~~~~~l~~dl~~Q~~~vr~m-----~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~ 384 (1062)
T KOG1912|consen 310 FKKPNASLSMDLGEQVHVVRPM-----EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFD 384 (1062)
T ss_pred ccccchhhccccccceEEEeec-----hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccccccc
Confidence 00 001111111111 000000111111111122223334555555542 210
Q ss_pred ---------------eEEEecCCcceeE--Ee-----------cCCC-------EEEEEecCCeEEEEeCCCC-cceeee
Q 043350 472 ---------------VSDILHHQCAVQC--FC-----------TYGS-------RMYVGYVSGYLQILDLDGN-LTASWI 515 (1133)
Q Consensus 472 ---------------l~~~~~h~~~V~~--fs-----------~dg~-------~Lasgs~DG~I~vwd~~g~-~l~~~~ 515 (1133)
+.....|....+| .. |.|+ .+|.|...|+|.|+|+..+ +.+.+.
T Consensus 385 f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fs 464 (1062)
T KOG1912|consen 385 FNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFS 464 (1062)
T ss_pred ccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhc
Confidence 0001124444444 11 1222 6899999999999999854 567899
Q ss_pred ccccCeEEeeec-ccceeeecc
Q 043350 516 AHSSPVLKLAVG-VDHIYSLAA 536 (1133)
Q Consensus 516 ~H~~~V~~l~fs-~~~L~S~s~ 536 (1133)
.|+..|.++.|. ...++|.+.
T Consensus 465 vht~~VkgleW~g~sslvSfsy 486 (1062)
T KOG1912|consen 465 VHTSLVKGLEWLGNSSLVSFSY 486 (1062)
T ss_pred ccccceeeeeeccceeEEEeee
Confidence 999999999998 566776554
No 302
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.73 E-value=0.035 Score=64.38 Aligned_cols=268 Identities=15% Similarity=0.155 Sum_probs=139.4
Q ss_pred EEEEeCC----CeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeC----CCcEEEEeCCCCceee
Q 043350 227 VWTGHKD----GKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGE----GGVIKIWPWESIEKSL 297 (1133)
Q Consensus 227 LaSgs~D----g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~----DgtI~iWdl~~~~~~l 297 (1133)
++.|+.. +.|.+|+++.... .+..+... .-...-..|+++|+++ |.++.+ ++.|..|++......+
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g----~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L 76 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETG----TLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL 76 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTT----EEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCC----CceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCccee
Confidence 4555655 7899999853111 11222221 1234456789999999 887776 4677777765320011
Q ss_pred Ee---CC-CCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCC-CceeEE---E
Q 043350 298 SL---KP-EEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARS-KELLKV---F 369 (1133)
Q Consensus 298 ~~---~~-~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~t-g~~l~~---~ 369 (1133)
.. .+ .+.. -..+.+. ++... ++++ +..++.|.++++.. |.+... +
T Consensus 77 ~~~~~~~~~g~~-------p~~i~~~-----------~~g~~-l~va--------ny~~g~v~v~~l~~~g~l~~~~~~~ 129 (345)
T PF10282_consen 77 TLLNSVPSGGSS-------PCHIAVD-----------PDGRF-LYVA--------NYGGGSVSVFPLDDDGSLGEVVQTV 129 (345)
T ss_dssp EEEEEEEESSSC-------EEEEEEC-----------TTSSE-EEEE--------ETTTTEEEEEEECTTSEEEEEEEEE
T ss_pred EEeeeeccCCCC-------cEEEEEe-----------cCCCE-EEEE--------EccCCeEEEEEccCCcccceeeeec
Confidence 00 00 0000 0011111 11211 2222 25688999999985 444332 2
Q ss_pred ec----------CCcceeEEEeCCCCCccccccceEEEEeeCC-CCccccccccccceeeccCCceEEE-EEecCCcccC
Q 043350 370 NI----------EGHIENRVDTQSVQDQPVEDEMKVKFVSSNK-KEKPHGFLQRSRNAIMGAADAVRRV-ATRGAGAFVD 437 (1133)
Q Consensus 370 ~~----------h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~-Dg~i~~~~~~~~~~~~~~~~~V~~v-~~~p~g~~~~ 437 (1133)
.. ......++.++|++++ +++... ...|..+.. ......+... .+. ..
T Consensus 130 ~~~g~g~~~~rq~~~h~H~v~~~pdg~~---------v~v~dlG~D~v~~~~~------~~~~~~l~~~~~~~-----~~ 189 (345)
T PF10282_consen 130 RHEGSGPNPDRQEGPHPHQVVFSPDGRF---------VYVPDLGADRVYVYDI------DDDTGKLTPVDSIK-----VP 189 (345)
T ss_dssp ESEEEESSTTTTSSTCEEEEEE-TTSSE---------EEEEETTTTEEEEEEE-------TTS-TEEEEEEEE-----CS
T ss_pred ccCCCCCcccccccccceeEEECCCCCE---------EEEEecCCCEEEEEEE------eCCCceEEEeeccc-----cc
Confidence 10 1223668999999987 555422 223321111 0111011111 111 12
Q ss_pred CCCCEEEEEECCCC-eE-EEEecCCeEEEEeCC--CC---eeEEEecC----Cc--cee--EEecCCCEEEEEe-cCCeE
Q 043350 438 DTKRTEAMVLTADG-MI-WSGCTNGLLVQWDGN--GN---RVSDILHH----QC--AVQ--CFCTYGSRMYVGY-VSGYL 501 (1133)
Q Consensus 438 h~~~V~sl~~spdg-~L-~sgs~DG~I~vWd~~--g~---~l~~~~~h----~~--~V~--~fs~dg~~Lasgs-~DG~I 501 (1133)
....-..++|+|++ ++ ++.-.+++|.++++. .. .++.+... .. ... .++|||++|+++. .+.+|
T Consensus 190 ~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 190 PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 33456778899998 44 455568889999885 22 23333221 11 122 2999999998877 57899
Q ss_pred EEEeCC---CCc--ceeeeccccCeEEeeec--ccceeeec-ccCCeeecccc
Q 043350 502 QILDLD---GNL--TASWIAHSSPVLKLAVG--VDHIYSLA-AHGGIRGWTFT 546 (1133)
Q Consensus 502 ~vwd~~---g~~--l~~~~~H~~~V~~l~fs--~~~L~S~s-~Dg~I~lW~l~ 546 (1133)
.+|+++ |++ +..+.........++++ +++|+.+. .++.|.+|++.
T Consensus 270 ~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 999994 222 33333334457889997 88887665 56689999875
No 303
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.72 E-value=8.6e-05 Score=56.02 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=32.0
Q ss_pred eeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEe
Q 043350 207 YESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWK 240 (1133)
Q Consensus 207 ~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd 240 (1133)
.+.+|.++|.||+|+|++.+|++|+.|++|++||
T Consensus 6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 5678999999999999999999999999999997
No 304
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.72 E-value=0.00021 Score=76.24 Aligned_cols=178 Identities=13% Similarity=0.171 Sum_probs=109.3
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCC-CCCeeeeccCCCcc-----ccccceEEEEE-eC---CCCeEE-ecCCcE
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPG-RPPCLELRPHPLKE-----TQAGRFLRNIA-CT---DTQLWA-GQECGV 177 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g-~~~~~~l~~H~~~~-----~~~g~~V~~v~-s~---dg~lla-s~Dg~V 177 (1133)
+-|.-.|.|||+|...|.|.++.+...... -....++++|...- -.+...|..|. .. ..++|+ +.|++|
T Consensus 32 Vefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdkti 111 (460)
T COG5170 32 VEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTI 111 (460)
T ss_pred EEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCcee
Confidence 778889999999999999999987753211 11134567776411 12223455565 33 234555 899999
Q ss_pred EEeeCCCC-CCc-----C--cCC---Cccc--------c---CCCCCCC--ce-ee-ccCCCCeEEEEEeCCCCEEEEEe
Q 043350 178 RFWNLEDS-YEP-----G--AGI---GGRV--------R---RGDEDAA--PF-YE-SANTSPTMCLMVDCGNRLVWTGH 231 (1133)
Q Consensus 178 rvWdl~~~-~~~-----~--~gh---~~~v--------~---~g~~~~~--~~-~~-~~h~s~V~~la~spd~~~LaSgs 231 (1133)
++|.+... .+. + .-| +|.+ + ..++..+ |. +. ..|.-.+.++.++.|...++++
T Consensus 112 KlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSa- 190 (460)
T COG5170 112 KLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSA- 190 (460)
T ss_pred eeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeec-
Confidence 99998652 100 0 000 1110 0 1111111 11 11 3566678999999999888876
Q ss_pred CCCeEEEEeCCCCCCCCCCCcccccccccC-----CCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCC
Q 043350 232 KDGKIRSWKMDQTLDDANNPFKEGLSWQAH-----RGPVLAMIFSSQGD--LWSGGEGGVIKIWPWES 292 (1133)
Q Consensus 232 ~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH-----~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~ 292 (1133)
.|=.|.+|+++-... . --+.-++.| +.-|++..|+|... +.-.+..|.|++-|++.
T Consensus 191 DdLrINLWnl~i~D~----s-FnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq 253 (460)
T COG5170 191 DDLRINLWNLEIIDG----S-FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQ 253 (460)
T ss_pred cceeeeeccccccCC----c-eEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhh
Confidence 567899999874221 0 112233344 45688999999865 66777889999999985
No 305
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.69 E-value=0.031 Score=61.40 Aligned_cols=88 Identities=16% Similarity=0.199 Sum_probs=60.7
Q ss_pred CCEEEEEECCCC-eE-EEEecCCeEEEEeCC--CCee---EEE---ecCCccee--EEecCCCEEEEEecCCeEEEEeCC
Q 043350 440 KRTEAMVLTADG-MI-WSGCTNGLLVQWDGN--GNRV---SDI---LHHQCAVQ--CFCTYGSRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 440 ~~V~sl~~spdg-~L-~sgs~DG~I~vWd~~--g~~l---~~~---~~h~~~V~--~fs~dg~~Lasgs~DG~I~vwd~~ 507 (1133)
...+.++++|++ .| ++-+..+.|..++.+ +..+ ..+ ....+..- ++..+|++.++....+.|.++|.+
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred ccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 346789999999 55 466778889999883 3312 122 11111122 277888877777789999999999
Q ss_pred CCcceeeeccccCeEEeeec
Q 043350 508 GNLTASWIAHSSPVLKLAVG 527 (1133)
Q Consensus 508 g~~l~~~~~H~~~V~~l~fs 527 (1133)
|+++..+.--...+++++|.
T Consensus 214 G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 214 GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp SCEEEEEE-SSSSEEEEEEE
T ss_pred ccEEEEEcCCCCCEEEEEEE
Confidence 99888777665689999995
No 306
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.69 E-value=0.0084 Score=79.04 Aligned_cols=254 Identities=9% Similarity=0.011 Sum_probs=135.9
Q ss_pred EEEEEeeC-Cc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCC
Q 043350 266 LAMIFSSQ-GD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHA 343 (1133)
Q Consensus 266 ~sl~fsp~-g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~ 343 (1133)
..+++++. |. +++-+.++.|++||........... .+.. +..++.. ....+..+....+-..++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~-~g~~---G~~dG~~----------~~a~f~~P~GIavd~~gn 636 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGS-TGEE---GLRDGSF----------EDATFNRPQGLAYNAKKN 636 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEcc-CCCc---CCCCCch----------hccccCCCcEEEEeCCCC
Confidence 46788875 55 7777788899999986532111111 0000 0000000 001112233333333333
Q ss_pred ceEEEecCCCceeEeecCCCceeEEEecCC-----------------cceeEEEeCC-CCCccccccceEEEEeeCCCCc
Q 043350 344 RARVWCAQPLSFSLWDARSKELLKVFNIEG-----------------HIENRVDTQS-VQDQPVEDEMKVKFVSSNKKEK 405 (1133)
Q Consensus 344 ~i~vwss~d~~I~lWD~~tg~~l~~~~~h~-----------------~~v~~l~~sp-~g~~~~e~e~~v~lasgs~Dg~ 405 (1133)
.+.+-......|+.+|..++. +.++.+.+ ..-..++++| ++.+ +++.+.++.
T Consensus 637 ~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~L---------yVad~~~~~ 706 (1057)
T PLN02919 637 LLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKV---------YIAMAGQHQ 706 (1057)
T ss_pred EEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeE---------EEEECCCCe
Confidence 344444566778888877654 33332210 1124688888 4555 666667777
Q ss_pred cccccccc--cceeeccCCceEEEEEecCCc--ccCCCCCEEEEEECCCC--eEEEEecCCeEEEEeCCCCeeEEEec--
Q 043350 406 PHGFLQRS--RNAIMGAADAVRRVATRGAGA--FVDDTKRTEAMVLTADG--MIWSGCTNGLLVQWDGNGNRVSDILH-- 477 (1133)
Q Consensus 406 i~~~~~~~--~~~~~~~~~~V~~v~~~p~g~--~~~h~~~V~sl~~spdg--~L~sgs~DG~I~vWd~~g~~l~~~~~-- 477 (1133)
|+.++... ...+.+.... ... ++. ..........++++|++ .+++-+.++.|++||.++.....+.+
T Consensus 707 I~v~d~~~g~v~~~~G~G~~---~~~--~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~ 781 (1057)
T PLN02919 707 IWEYNISDGVTRVFSGDGYE---RNL--NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGD 781 (1057)
T ss_pred EEEEECCCCeEEEEecCCcc---ccC--CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecc
Confidence 76333221 1111110000 000 000 00112345678999998 44555667999999984321111110
Q ss_pred ------------CC---------cce-eEEecCCCEEEEEecCCeEEEEeCCCCcceeeecc--------------ccCe
Q 043350 478 ------------HQ---------CAV-QCFCTYGSRMYVGYVSGYLQILDLDGNLTASWIAH--------------SSPV 521 (1133)
Q Consensus 478 ------------h~---------~~V-~~fs~dg~~Lasgs~DG~I~vwd~~g~~l~~~~~H--------------~~~V 521 (1133)
+. .+. .+++++|+.+++-+.+++|++||..+..+.++.+. -...
T Consensus 782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P 861 (1057)
T PLN02919 782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEP 861 (1057)
T ss_pred cccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCc
Confidence 00 011 12788999888888999999999976544433322 2246
Q ss_pred EEeeec--ccceeeecccCCeeeccccCC
Q 043350 522 LKLAVG--VDHIYSLAAHGGIRGWTFTSP 548 (1133)
Q Consensus 522 ~~l~fs--~~~L~S~s~Dg~I~lW~l~s~ 548 (1133)
..|+++ ++.+++-+.++.|++|++...
T Consensus 862 ~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 862 AGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred eEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 778887 777788888999999998653
No 307
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.0004 Score=77.84 Aligned_cols=216 Identities=13% Similarity=0.048 Sum_probs=140.0
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeC-CCcEEEE
Q 043350 211 NTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGE-GGVIKIW 288 (1133)
Q Consensus 211 h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~-DgtI~iW 288 (1133)
|...|+.+... -.+++.+++.||.++.|.-.. ..-..-+..+..|-+.|.+++.+-+|. +.|.+. |..+|++
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~-----isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSR-----ISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCC-----ccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEE
Confidence 44444444333 467899999999999998654 122355667889999999999999999 888887 9999999
Q ss_pred eCCCC--c--eeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCc
Q 043350 289 PWESI--E--KSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKE 364 (1133)
Q Consensus 289 dl~~~--~--~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~ 364 (1133)
|+++. . ..+..-|... .|... -...-..+.++. ..++.+.++|-..+.
T Consensus 82 DvEn~DminmiKL~~lPg~a----------~wv~s----------kGd~~s~IAVs~--------~~sg~i~VvD~~~d~ 133 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFA----------EWVTS----------KGDKISLIAVSL--------FKSGKIFVVDGFGDF 133 (558)
T ss_pred EeeccchhhhcccccCCCce----------EEecC----------CCCeeeeEEeec--------ccCCCcEEECCcCCc
Confidence 99762 1 1111112111 11111 001112333444 678889999987443
Q ss_pred -ee-EEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccc-cceeeccCCceEEEEEecCCc-----cc
Q 043350 365 -LL-KVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRS-RNAIMGAADAVRRVATRGAGA-----FV 436 (1133)
Q Consensus 365 -~l-~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~-~~~~~~~~~~V~~v~~~p~g~-----~~ 436 (1133)
.. ..-..|.++|..+.+.+.+.. +++....|.|..|.... .+- +-..+.|.+... +.
T Consensus 134 ~q~~~fkklH~sPV~~i~y~qa~Ds---------~vSiD~~gmVEyWs~e~~~qf------Pr~~l~~~~K~eTdLy~f~ 198 (558)
T KOG0882|consen 134 CQDGYFKKLHFSPVKKIRYNQAGDS---------AVSIDISGMVEYWSAEGPFQF------PRTNLNFELKHETDLYGFP 198 (558)
T ss_pred CccceecccccCceEEEEeeccccc---------eeeccccceeEeecCCCcccC------ccccccccccccchhhccc
Confidence 33 333568899999999999988 88888888887666542 111 001112221110 23
Q ss_pred CCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEE
Q 043350 437 DDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDI 475 (1133)
Q Consensus 437 ~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~ 475 (1133)
.......++.|+|+| .+.+-+.|..|++++. .|+.++.+
T Consensus 199 K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 199 KAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred ccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 344557789999999 9999999999999998 45555544
No 308
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.67 E-value=0.0017 Score=77.11 Aligned_cols=96 Identities=17% Similarity=0.199 Sum_probs=69.7
Q ss_pred eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeEEecCCC-EEEEEe----------cCCeEEEEeCCCCcceeeec---
Q 043350 452 MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQCFCTYGS-RMYVGY----------VSGYLQILDLDGNLTASWIA--- 516 (1133)
Q Consensus 452 ~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~fs~dg~-~Lasgs----------~DG~I~vwd~~g~~l~~~~~--- 516 (1133)
.++.|...|+|.++|. .+..-+.+..|.+.|.++..-|. .|++.+ .-+.+.|-|+...+-+.|++
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~ 518 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQK 518 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCC
Confidence 5889999999999999 55666788889999998443332 233222 23356677777544444443
Q ss_pred -cccCeEEeeec--ccceeeecccCCeeeccccC
Q 043350 517 -HSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 517 -H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s 547 (1133)
...+|..+..+ ++||+-.=.|.-+.+|++..
T Consensus 519 ~despI~~irvS~~~~yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 519 PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKT 552 (1062)
T ss_pred CCcCcceeeeecccCceEEEEecccchHHHhhcc
Confidence 34789998888 99999999999999999755
No 309
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=97.65 E-value=0.00018 Score=77.65 Aligned_cols=110 Identities=22% Similarity=0.319 Sum_probs=66.5
Q ss_pred EEEEEEcCCCCCCchhhhhhhcCCCCCccEEEEeeeecccccchhhhhhhhhhhcCCCCcchhhHHHHHhhhcCCCC-cE
Q 043350 575 LVGTWNVGQGRASHESLLSWLGSVSSDVGIVAVGLQEVEMGAGFLAMSAAKETVGLEGSAIGQWWQDTIGKALDEGT-TF 653 (1133)
Q Consensus 575 ~v~TWNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~-~y 653 (1133)
.+.|||||+-+.....|.+||.. ..||| |+|||+-.....+ +++ .++ . .|| .|
T Consensus 2 kI~SwNVNgiRar~~~~~~~l~~--~~pDV--lclQEtK~~~~~f----p~~---------------~~~-~--~GY~~~ 55 (261)
T COG0708 2 KIASWNVNGLRARLKKLLDWLEE--EQPDV--LCLQETKAQDEQF----PRE---------------ELE-A--LGYHHV 55 (261)
T ss_pred eeEEEehhhHHHHHHHHHHHHHH--hCCCE--EEEEecccCcccC----CHh---------------HHh-h--CCceEE
Confidence 57899999987766679999985 44665 6899985432111 111 111 1 244 44
Q ss_pred EEEeeeecceEEEEEEEecccccccCceeeccccccccccc-ccceeEEEEEEEcCeEEEEEecccccChH
Q 043350 654 ERMGSRQLAGLLISFWVRKNLRTHVGDVDAAAVPCGFGRAI-GNKGGVGLRIRVYDRTICFVNCHLAAHLE 723 (1133)
Q Consensus 654 ~~v~~~~l~g~~l~v~~~~~~~~~i~~v~~~~v~~G~~~~~-gnKG~v~~r~~~~~~~~~fvn~Hlaa~~~ 723 (1133)
..-+.+.-.|++| ++|.... .|..||.+.- --.=+=.|...+.+ |.++|..+++|+.
T Consensus 56 ~~~gqKgysGVai--lsr~~~~---------~v~~g~~~~~~~d~e~R~I~a~~~~--~~v~~~Y~PnG~~ 113 (261)
T COG0708 56 FNHGQKGYSGVAI--LSKKPPD---------DVRRGFPGEEEDDEEGRVIEAEFDG--FRVINLYFPNGSS 113 (261)
T ss_pred EecCcCCcceEEE--EEccCch---------hhhcCCCCCccccccCcEEEEEECC--EEEEEEEcCCCCC
Confidence 4445556667654 6666543 5677877631 11113334444555 8899999999986
No 310
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.63 E-value=0.00035 Score=77.63 Aligned_cols=104 Identities=17% Similarity=0.199 Sum_probs=69.5
Q ss_pred EEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCC--ceeeEe-CCCCc
Q 043350 229 TGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESI--EKSLSL-KPEEK 304 (1133)
Q Consensus 229 Sgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~--~~~l~~-~~~~~ 304 (1133)
.++....+.+|.... .....+.||-.-++.|+|+||++ |+|+..|..||+=..... +..+.+ |.+-.
T Consensus 127 kagD~~~~di~s~~~---------~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFV 197 (390)
T KOG3914|consen 127 KAGDVYSFDILSADS---------GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFV 197 (390)
T ss_pred ecCCceeeeeecccc---------cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhhe
Confidence 344456666776653 23345679999999999999999 999999999999776542 222222 22211
Q ss_pred eEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecC
Q 043350 305 HMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIE 372 (1133)
Q Consensus 305 ~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h 372 (1133)
. .+. -.+...++|+ ++|+++++||+.+|+.+.++...
T Consensus 198 S---------~is--------------l~~~~~LlS~--------sGD~tlr~Wd~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 198 S---------TIS--------------LTDNYLLLSG--------SGDKTLRLWDITSGKLLDTCDLS 234 (390)
T ss_pred e---------eee--------------eccCceeeec--------CCCCcEEEEecccCCcccccchh
Confidence 1 000 1122235666 89999999999999999777543
No 311
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.018 Score=66.53 Aligned_cols=296 Identities=14% Similarity=0.134 Sum_probs=150.6
Q ss_pred EE-eCCCCeEE-ecCCcEEEeeCCCC-CCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCC-----
Q 043350 162 IA-CTDTQLWA-GQECGVRFWNLEDS-YEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKD----- 233 (1133)
Q Consensus 162 v~-s~dg~lla-s~Dg~VrvWdl~~~-~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~D----- 233 (1133)
+. ||-|.+|+ -....|.+|--..- ...-. .| ..|.-+.|||+.++|+|-+..
T Consensus 216 v~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF-------------------~H-p~Vq~idfSP~EkYLVT~s~~p~~~~ 275 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQGIALWGGESFDRIQRF-------------------YH-PGVQFIDFSPNEKYLVTYSPEPIIVE 275 (698)
T ss_pred EEecCCceEEEEEeccceeeecCccHHHHHhc-------------------cC-CCceeeecCCccceEEEecCCccccC
Confidence 34 99999999 66778999965441 11111 22 257788899999999997641
Q ss_pred ------CeEEEEeCCCCCCCCCCCccccccccc--CCCCeE-EEEEeeCCc-EEEEeCCCcEEEEeCCC-----------
Q 043350 234 ------GKIRSWKMDQTLDDANNPFKEGLSWQA--HRGPVL-AMIFSSQGD-LWSGGEGGVIKIWPWES----------- 292 (1133)
Q Consensus 234 ------g~V~vWd~~~~~~~~~~~~~~~~~l~g--H~~~V~-sl~fsp~g~-L~Sgs~DgtI~iWdl~~----------- 292 (1133)
..++|||+.++.. ...+.. -...++ -..||-|++ ++--.. .+|.|++...
T Consensus 276 ~~d~e~~~l~IWDI~tG~l--------krsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki 346 (698)
T KOG2314|consen 276 EDDNEGQQLIIWDIATGLL--------KRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKI 346 (698)
T ss_pred cccCCCceEEEEEccccch--------hcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCC
Confidence 4789999987432 112221 112222 347888888 544433 6688887654
Q ss_pred -CceeeEeCCCCceEEEEeecce-------EEEccCceeeec--------cccC--CCCCeEEEEecCCceEEEecCCCc
Q 043350 293 -IEKSLSLKPEEKHMAALLVERS-------FIDLRAQVTVNG--------ACSI--SSTEIKCMLSDHARARVWCAQPLS 354 (1133)
Q Consensus 293 -~~~~l~~~~~~~~l~s~~~d~s-------~~d~~~~~~v~~--------~~~~--~~~~~~~l~S~d~~i~vwss~d~~ 354 (1133)
+++.++++|.+..+|--..+.. ++.+.+...+.. +.-+ .+++..++-..-..-.-..+.-..
T Consensus 347 ~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n 426 (698)
T KOG2314|consen 347 SGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSN 426 (698)
T ss_pred ccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEee
Confidence 2566777777665543322211 222222111111 1111 122222222110000000011112
Q ss_pred eeEeecCCCc-eeEEEecCCcceeEEEeCCCCCccccccceEEEEe--eCCCC-ccccccccccceeeccCCceEEEEEe
Q 043350 355 FSLWDARSKE-LLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVS--SNKKE-KPHGFLQRSRNAIMGAADAVRRVATR 430 (1133)
Q Consensus 355 I~lWD~~tg~-~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~las--gs~Dg-~i~~~~~~~~~~~~~~~~~V~~v~~~ 430 (1133)
+.|+.++... ++..+. -...|...+|-|.|+. +++ |.... ++ .+ +.+...
T Consensus 427 ~eIfrireKdIpve~ve-lke~vi~FaWEP~gdk---------F~vi~g~~~k~tv-sf---------------Y~~e~~ 480 (698)
T KOG2314|consen 427 LEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDK---------FAVISGNTVKNTV-SF---------------YAVETN 480 (698)
T ss_pred EEEEEeeccCCCceeee-cchheeeeeeccCCCe---------EEEEEccccccce-eE---------------EEeecC
Confidence 3344444322 222222 2345667888888875 433 22211 11 11 011000
Q ss_pred cCCc---ccCCCCCEEEEEECCCC-eEEEE---ecCCeEEEEeCCCCeeEEE--ecCCcceeE-EecCCCEEEEEec---
Q 043350 431 GAGA---FVDDTKRTEAMVLTADG-MIWSG---CTNGLLVQWDGNGNRVSDI--LHHQCAVQC-FCTYGSRMYVGYV--- 497 (1133)
Q Consensus 431 p~g~---~~~h~~~V~sl~~spdg-~L~sg---s~DG~I~vWd~~g~~l~~~--~~h~~~V~~-fs~dg~~Lasgs~--- 497 (1133)
+... ..-.....+.+.++|.| .++.+ |..|.+.++|.+-.-++.. ..|...-.- |.|.|+|+++++.
T Consensus 481 ~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wr 560 (698)
T KOG2314|consen 481 IKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWR 560 (698)
T ss_pred CCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhh
Confidence 0000 01112346678899999 55544 4578899999864222222 224433333 9999999999984
Q ss_pred ---CCeEEEEeCCCCcce
Q 043350 498 ---SGYLQILDLDGNLTA 512 (1133)
Q Consensus 498 ---DG~I~vwd~~g~~l~ 512 (1133)
|..-++|+..|.+++
T Consensus 561 hk~d~GYri~tfqGrll~ 578 (698)
T KOG2314|consen 561 HKVDNGYRIFTFQGRLLK 578 (698)
T ss_pred hccccceEEEEeecHHHH
Confidence 445678888876654
No 312
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.59 E-value=0.069 Score=61.26 Aligned_cols=73 Identities=15% Similarity=0.117 Sum_probs=52.1
Q ss_pred CEEEEEECCCC-eEEEEe----------cCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCC-EEEEEe-cCCeEEEE
Q 043350 441 RTEAMVLTADG-MIWSGC----------TNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGS-RMYVGY-VSGYLQIL 504 (1133)
Q Consensus 441 ~V~sl~~spdg-~L~sgs----------~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~-~Lasgs-~DG~I~vw 504 (1133)
...-+++++++ .++... ..+.|.++|. +++.+..+... ..+.. +++||+ +|++.+ .++.|.++
T Consensus 249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~~s~~VsVi 327 (352)
T TIGR02658 249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSINVSQDAKPLLYALSTGDKTLYIF 327 (352)
T ss_pred cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEEECCCCCeEEEEeCCCCCcEEEE
Confidence 34458899998 666632 1247999999 56777777653 23444 999999 888777 68899999
Q ss_pred eCCC-Ccceee
Q 043350 505 DLDG-NLTASW 514 (1133)
Q Consensus 505 d~~g-~~l~~~ 514 (1133)
|... +.+++.
T Consensus 328 D~~t~k~i~~i 338 (352)
T TIGR02658 328 DAETGKELSSV 338 (352)
T ss_pred ECcCCeEEeee
Confidence 9874 566654
No 313
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.58 E-value=0.018 Score=68.11 Aligned_cols=96 Identities=22% Similarity=0.225 Sum_probs=63.8
Q ss_pred CCeEEEEecCCeEEEEeC-CCCeeEEEecCCccee-EEecCCCEEEEEecCCeEEEEeCC-CCcceeeeccccCeE-Eee
Q 043350 450 DGMIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQ-CFCTYGSRMYVGYVSGYLQILDLD-GNLTASWIAHSSPVL-KLA 525 (1133)
Q Consensus 450 dg~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~-~fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~H~~~V~-~l~ 525 (1133)
++.|+.++.+|.+..+|. +|+.+.....-..... +-...+.+|++++.||.|+++|.. |+.+....-....+. ...
T Consensus 294 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~ 373 (394)
T PRK11138 294 GGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPV 373 (394)
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCE
Confidence 347888889999999999 6666654432111111 211236678899999999999985 666655544333333 334
Q ss_pred ecccceeeecccCCeeeccc
Q 043350 526 VGVDHIYSLAAHGGIRGWTF 545 (1133)
Q Consensus 526 fs~~~L~S~s~Dg~I~lW~l 545 (1133)
+.+..|+.++.||.|..+++
T Consensus 374 ~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 374 VADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EECCEEEEEeCCceEEEEeC
Confidence 45778999999999887653
No 314
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.54 E-value=0.014 Score=69.30 Aligned_cols=76 Identities=12% Similarity=0.055 Sum_probs=45.1
Q ss_pred EECCCC-eEEEEecC---------CeEEEEeCCCCeeEEEecCCcc-eeEEecCCCEEEEEecC---CeEEEEeCCCCcc
Q 043350 446 VLTADG-MIWSGCTN---------GLLVQWDGNGNRVSDILHHQCA-VQCFCTYGSRMYVGYVS---GYLQILDLDGNLT 511 (1133)
Q Consensus 446 ~~spdg-~L~sgs~D---------G~I~vWd~~g~~l~~~~~h~~~-V~~fs~dg~~Lasgs~D---G~I~vwd~~g~~l 511 (1133)
.++||| .|+..+.. ..|.+.|+.+.....+...... -..|+|||+.|+....+ ..+.+.+++|+..
T Consensus 325 ~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~ 404 (419)
T PRK04043 325 SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKS 404 (419)
T ss_pred eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCee
Confidence 689999 55544433 3677888865444555443211 13399999987766532 2477778888655
Q ss_pred eeeeccccCe
Q 043350 512 ASWIAHSSPV 521 (1133)
Q Consensus 512 ~~~~~H~~~V 521 (1133)
..+....+.|
T Consensus 405 ~~l~~~~g~~ 414 (419)
T PRK04043 405 FLFPLKVGKI 414 (419)
T ss_pred EEeecCCCcc
Confidence 4444433333
No 315
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.54 E-value=0.00026 Score=74.22 Aligned_cols=72 Identities=19% Similarity=0.335 Sum_probs=61.7
Q ss_pred CeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeC
Q 043350 214 PTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPW 290 (1133)
Q Consensus 214 ~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl 290 (1133)
.|.+++-+| ..+++++|+.||.+.+||++.. ..+...+.+|+.+++-+-|+|... |+++++||.+-.||.
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~-------~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wda 253 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNV-------AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDA 253 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccc-------cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcC
Confidence 488888888 5678899999999999999862 145567899999999999999855 999999999999998
Q ss_pred CC
Q 043350 291 ES 292 (1133)
Q Consensus 291 ~~ 292 (1133)
.+
T Consensus 254 s~ 255 (319)
T KOG4714|consen 254 ST 255 (319)
T ss_pred CC
Confidence 65
No 316
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=97.53 E-value=0.0014 Score=79.57 Aligned_cols=64 Identities=14% Similarity=0.201 Sum_probs=42.5
Q ss_pred EEEEEecccccChHHHHHHHHHHHHHHHhCccCCCCCcccccccccccccccccccCCcccCCCCCCCCCCCCccEEEEE
Q 043350 710 TICFVNCHLAAHLEAVNRRNADYDHIYRNMVFSRSTSTLNSASAGVSTAVNMMKTSNTTTTLNTEETKPDLAEADMVIFF 789 (1133)
Q Consensus 710 ~~~fvn~Hlaa~~~~~~~Rn~d~~~i~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~ 789 (1133)
.||++|+||-.+...-.-|..+...|++.+.-- .. . ..-.+|++
T Consensus 418 ~l~VaNTHL~~~p~~~dvRl~Q~~~Ll~~l~~~--~~----------------------------~------~~~PvIlc 461 (606)
T PLN03144 418 LLCVANTHIHANQELKDVKLWQVHTLLKGLEKI--AA----------------------------S------ADIPMLVC 461 (606)
T ss_pred EEEEEEeeeccCCccchhHHHHHHHHHHHHHHH--hh----------------------------c------CCCceEEe
Confidence 599999999777665556777777777765310 00 0 01248999
Q ss_pred ccCCccccCCChHHHHHhhccCCh
Q 043350 790 GDFNYRLFGISYDEARDFVSQRCF 813 (1133)
Q Consensus 790 GDlNyRi~~~~~~~~~~~~~~~~~ 813 (1133)
||||-- +...+-+++.++.+
T Consensus 462 GDFNS~----P~S~vy~lLt~G~v 481 (606)
T PLN03144 462 GDFNSV----PGSAPHCLLATGKV 481 (606)
T ss_pred ccCCCC----CCChhhhhhhcCCc
Confidence 999963 55667778877654
No 317
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0018 Score=72.81 Aligned_cols=148 Identities=19% Similarity=0.211 Sum_probs=99.6
Q ss_pred CCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ec-CCcEEEeeCCCC--C
Q 043350 113 PMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQ-ECGVRFWNLEDS--Y 186 (1133)
Q Consensus 113 p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~-Dg~VrvWdl~~~--~ 186 (1133)
.-.+++.+++-||.++.|..... .+-.-+..++.|.+ .+.+++ +-++-++. +. |..+|++|+.+. .
T Consensus 18 tka~fiiqASlDGh~KFWkKs~i-sGvEfVKhFraHL~-------~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dmi 89 (558)
T KOG0882|consen 18 TKAKFIIQASLDGHKKFWKKSRI-SGVEFVKHFRAHLG-------VILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMI 89 (558)
T ss_pred ehhheEEeeecchhhhhcCCCCc-cceeehhhhHHHHH-------HHHhhhccccceeEeeccCcccceeEEEeeccchh
Confidence 34568999999999999975410 13333556778887 788888 77888888 44 899999998871 1
Q ss_pred CcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCC-C-CEE-EEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCC
Q 043350 187 EPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCG-N-RLV-WTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRG 263 (1133)
Q Consensus 187 ~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd-~-~~L-aSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~ 263 (1133)
..+ -..-.....++..++. - ..| ++.-.+|.+.|+|-....+ +....-.-|..
T Consensus 90 nmi------------------KL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~------q~~~fkklH~s 145 (558)
T KOG0882|consen 90 NMI------------------KLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC------QDGYFKKLHFS 145 (558)
T ss_pred hhc------------------ccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC------ccceecccccC
Confidence 110 0000111112222221 1 133 3344578999999876444 44445567999
Q ss_pred CeEEEEEeeCCc-EEEEeCCCcEEEEeCCC
Q 043350 264 PVLAMIFSSQGD-LWSGGEGGVIKIWPWES 292 (1133)
Q Consensus 264 ~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~ 292 (1133)
+|..+.+.+-++ ++|....|.|.-|..+.
T Consensus 146 PV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~ 175 (558)
T KOG0882|consen 146 PVKKIRYNQAGDSAVSIDISGMVEYWSAEG 175 (558)
T ss_pred ceEEEEeeccccceeeccccceeEeecCCC
Confidence 999999999999 99999999999998763
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.0047 Score=74.74 Aligned_cols=214 Identities=14% Similarity=0.171 Sum_probs=131.3
Q ss_pred EeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCC-eEEEEEeeCCc-EEEEeCCCc-----EEEEeCCC
Q 043350 220 VDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGP-VLAMIFSSQGD-LWSGGEGGV-----IKIWPWES 292 (1133)
Q Consensus 220 ~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~-V~sl~fsp~g~-L~Sgs~Dgt-----I~iWdl~~ 292 (1133)
|++.+..+|.|+.+|.|.+.+-.. +.+..+++|... |..+....+.. |+|.++|+. |+||+++.
T Consensus 31 ~~s~~~~vvigt~~G~V~~Ln~s~---------~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 31 CSSSTGSVVIGTADGRVVILNSSF---------QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred EcCCCceEEEeeccccEEEecccc---------eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence 567889999999999988887765 666788888776 54444433334 888888765 88998864
Q ss_pred CceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecC
Q 043350 293 IEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIE 372 (1133)
Q Consensus 293 ~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h 372 (1133)
..+. .+|... +..+++-. .+...
T Consensus 102 ~~~n----------------------------------~sP~c~----------------~~~ri~~~-------~np~~ 124 (933)
T KOG2114|consen 102 VDKN----------------------------------NSPQCL----------------YEHRIFTI-------KNPTN 124 (933)
T ss_pred cCCC----------------------------------CCccee----------------eeeeeecc-------CCCCC
Confidence 2100 000000 00000000 01123
Q ss_pred CcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-
Q 043350 373 GHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG- 451 (1133)
Q Consensus 373 ~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg- 451 (1133)
..++..++++.+-.. +|+|-.+|.|....+...+. ...+.... .....+|+.+++..++
T Consensus 125 ~~p~s~l~Vs~~l~~---------Iv~Gf~nG~V~~~~GDi~RD------rgsr~~~~-----~~~~~pITgL~~~~d~~ 184 (933)
T KOG2114|consen 125 PSPASSLAVSEDLKT---------IVCGFTNGLVICYKGDILRD------RGSRQDYS-----HRGKEPITGLALRSDGK 184 (933)
T ss_pred CCcceEEEEEccccE---------EEEEecCcEEEEEcCcchhc------cccceeee-----ccCCCCceeeEEecCCc
Confidence 456778888888777 99999999986333322111 00122222 2345678999998888
Q ss_pred eEEEEecCCeEEEEeCCCCe--eEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCCC-cceeee-ccccC
Q 043350 452 MIWSGCTNGLLVQWDGNGNR--VSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGN-LTASWI-AHSSP 520 (1133)
Q Consensus 452 ~L~sgs~DG~I~vWd~~g~~--l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~-~l~~~~-~H~~~ 520 (1133)
.++....-..|.+|.++|+. +..+..|...+.| +++....+++++ +..|.+|+..+. +-..|. ||...
T Consensus 185 s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 185 SVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKE 258 (933)
T ss_pred eeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEE
Confidence 43444455679999997755 5667788899999 444333355554 456999999863 333444 55543
No 319
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.50 E-value=0.00011 Score=79.63 Aligned_cols=111 Identities=17% Similarity=0.289 Sum_probs=86.5
Q ss_pred CCCEEEEEECCCC-eEEEEecCCeEEEEeCC----C--CeeEEEecCCcceeE---EecCCCEEEEEecCCeEEEEeCC-
Q 043350 439 TKRTEAMVLTADG-MIWSGCTNGLLVQWDGN----G--NRVSDILHHQCAVQC---FCTYGSRMYVGYVSGYLQILDLD- 507 (1133)
Q Consensus 439 ~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~----g--~~l~~~~~h~~~V~~---fs~dg~~Lasgs~DG~I~vwd~~- 507 (1133)
.+.|.++.|...+ .++.|+.+|.|...|+. | .+.+.+ .|.+.|+| +.-++++|.+.+.+|+|++||+.
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence 3456666677655 89999999999999982 2 333333 48889999 55578899999999999999986
Q ss_pred ---CCcceeeeccccCeEEeeec----ccceeeecccCCeeeccccCCCC
Q 043350 508 ---GNLTASWIAHSSPVLKLAVG----VDHIYSLAAHGGIRGWTFTSPSP 550 (1133)
Q Consensus 508 ---g~~l~~~~~H~~~V~~l~fs----~~~L~S~s~Dg~I~lW~l~s~~~ 550 (1133)
++-+.++.||...-.-+-++ ...|+++|.|...|+|.+.+...
T Consensus 331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL 380 (425)
T ss_pred hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCce
Confidence 23488899998665555555 78899999999999999987544
No 320
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.47 E-value=0.11 Score=59.15 Aligned_cols=151 Identities=12% Similarity=0.049 Sum_probs=98.3
Q ss_pred cCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCcccccc------ceEEEEEeCCCCeEE-ecCCcEEEeeCC
Q 043350 111 FQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAG------RFLRNIACTDTQLWA-GQECGVRFWNLE 183 (1133)
Q Consensus 111 ~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g------~~V~~v~s~dg~lla-s~Dg~VrvWdl~ 183 (1133)
.+.||+.|+-. ..|.|.++|.++ .+...+.+--...+.+... +.....+-.+|.+++ -.-|.+.+.+.-
T Consensus 274 ~nsDGkrIvFq-~~GdIylydP~t---d~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~ 349 (668)
T COG4946 274 ANSDGKRIVFQ-NAGDIYLYDPET---DSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPW 349 (668)
T ss_pred cCCCCcEEEEe-cCCcEEEeCCCc---CcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCC
Confidence 47788887643 346788988764 2211122210111111111 112222234788888 556777776544
Q ss_pred CCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCC-eEEEEeCCCCCCCCCCCcccccccccCC
Q 043350 184 DSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDG-KIRSWKMDQTLDDANNPFKEGLSWQAHR 262 (1133)
Q Consensus 184 ~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg-~V~vWd~~~~~~~~~~~~~~~~~l~gH~ 262 (1133)
... .+..+|.+.|.-..+..++.-++.|..|| .+-|+|.++ .+...+...-
T Consensus 350 ~~~-------------------~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~---------~e~kr~e~~l 401 (668)
T COG4946 350 DGY-------------------SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG---------GEVKRIEKDL 401 (668)
T ss_pred CCe-------------------eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCC---------ceEEEeeCCc
Confidence 322 23334555677777777888899999999 899999998 5556677778
Q ss_pred CCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCC
Q 043350 263 GPVLAMIFSSQGD-LWSGGEGGVIKIWPWESI 293 (1133)
Q Consensus 263 ~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~ 293 (1133)
+.|.+|..+++|+ ++.+-....|-+.|++++
T Consensus 402 g~I~av~vs~dGK~~vvaNdr~el~vididng 433 (668)
T COG4946 402 GNIEAVKVSPDGKKVVVANDRFELWVIDIDNG 433 (668)
T ss_pred cceEEEEEcCCCcEEEEEcCceEEEEEEecCC
Confidence 8999999999999 888877778888888874
No 321
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.46 E-value=0.0042 Score=65.66 Aligned_cols=148 Identities=12% Similarity=0.070 Sum_probs=97.7
Q ss_pred EEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCc
Q 043350 118 IGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGG 194 (1133)
Q Consensus 118 lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~ 194 (1133)
+..++.|+++++.+++ +.. ....-|-..- .+.+++ ++++.+++ +....|..|.++....-+ .
T Consensus 131 ~~i~sndht~k~~~~~----~~s--~~~~~h~~~~-----~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~---~- 195 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVS----GDS--NKFAVHNQNL-----TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYI---E- 195 (344)
T ss_pred eeeccCCcceeEEEEe----cCc--ccceeecccc-----ceeeeEEcCCCceEEEecCCCcceEEEeCCcccee---e-
Confidence 5567888888888776 332 1122233200 356667 89999999 778899999988732111 0
Q ss_pred cccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCC
Q 043350 195 RVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQG 274 (1133)
Q Consensus 195 ~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g 274 (1133)
......-...-.|..|+.....+|++..||++.|||++.... .......+-..|.+.|+.+.|++.|
T Consensus 196 ----------~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t---pm~~~sstrp~hnGa~R~c~Fsl~g 262 (344)
T KOG4532|consen 196 ----------NIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT---PMAEISSTRPHHNGAFRVCRFSLYG 262 (344)
T ss_pred ----------eeEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccccc---chhhhcccCCCCCCceEEEEecCCC
Confidence 101112223457889999999999999999999999985221 1112222334589999999999988
Q ss_pred c--E-EEEeCCCcEEEEeCCCC
Q 043350 275 D--L-WSGGEGGVIKIWPWESI 293 (1133)
Q Consensus 275 ~--L-~Sgs~DgtI~iWdl~~~ 293 (1133)
. | +-.-.-+.+.+.|+++.
T Consensus 263 ~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 263 LLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred cceEEEEecCcceEEEEEcccC
Confidence 7 3 33334577889999874
No 322
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.46 E-value=0.034 Score=61.73 Aligned_cols=245 Identities=16% Similarity=0.156 Sum_probs=125.5
Q ss_pred EEEEeC-CCCEEEEEeCCCe-EEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEE-----eCCCcEEEE
Q 043350 217 CLMVDC-GNRLVWTGHKDGK-IRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSG-----GEGGVIKIW 288 (1133)
Q Consensus 217 ~la~sp-d~~~LaSgs~Dg~-V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sg-----s~DgtI~iW 288 (1133)
.++.+| ....++.+-.-|+ ..+||..++.....-...+-..|.||. +|+++|+ |++. +..|.|-||
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg------~fs~dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHG------VFSPDGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCE------EEcCCCCEEEEeccccCCCcEEEEEE
Confidence 345566 4556666766654 567787653321000112334667774 8999999 7765 346789999
Q ss_pred eCCCC-c------------eeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEE-ecCCCc
Q 043350 289 PWESI-E------------KSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVW-CAQPLS 354 (1133)
Q Consensus 289 dl~~~-~------------~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vw-ss~d~~ 354 (1133)
|.... . ..+.+.+++..++.+ ..++.-++.. ++.++. ..-+-+
T Consensus 83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA--------------NGGI~Thpd~---------GR~kLNl~tM~ps 139 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIGPHELLLMPDGETLVVA--------------NGGIETHPDS---------GRAKLNLDTMQPS 139 (305)
T ss_pred ECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEE--------------cCCCccCccc---------CceecChhhcCCc
Confidence 99842 2 222233333332222 0111111111 122221 134556
Q ss_pred eeEeecCCCceeEEEec----CCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEe
Q 043350 355 FSLWDARSKELLKVFNI----EGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATR 430 (1133)
Q Consensus 355 I~lWD~~tg~~l~~~~~----h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~ 430 (1133)
+.+-|..+|+++..... |...+..+++.+++.. ++..-..+.-. ....+-.+.........+ --
T Consensus 140 L~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V---------~~a~Q~qg~~~--~~~PLva~~~~g~~~~~~-~~ 207 (305)
T PF07433_consen 140 LVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTV---------AFAMQYQGDPG--DAPPLVALHRRGGALRLL-PA 207 (305)
T ss_pred eEEEecCCCceeeeeecCccccccceeeEEecCCCcE---------EEEEecCCCCC--ccCCeEEEEcCCCcceec-cC
Confidence 77778889998876433 5667889999998865 33322222210 001111111111111111 11
Q ss_pred cCCcccCCCCCEEEEEECCCC-eE-EEEecCCeEEEEeC-CCCeeEEEecCCcceeEEecCCCEEEEEecCCeEEEE
Q 043350 431 GAGAFVDDTKRTEAMVLTADG-MI-WSGCTNGLLVQWDG-NGNRVSDILHHQCAVQCFCTYGSRMYVGYVSGYLQIL 504 (1133)
Q Consensus 431 p~g~~~~h~~~V~sl~~spdg-~L-~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~fs~dg~~Lasgs~DG~I~vw 504 (1133)
|......-..-+-+|+++.++ .+ +|+-.-|.+.+||. +|..+...... .++.+.+.+.-++..+..|.+...
T Consensus 208 p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~f~~ssG~G~~~~~ 282 (305)
T PF07433_consen 208 PEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP--DACGVAPTDDGFLVSSGQGQLIRL 282 (305)
T ss_pred ChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC--ceeeeeecCCceEEeCCCccEEEc
Confidence 111223445668899999998 55 55567888999988 66766555432 233355444334444445554333
No 323
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.43 E-value=0.0077 Score=64.80 Aligned_cols=171 Identities=13% Similarity=0.186 Sum_probs=107.0
Q ss_pred cccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eC-------CCCeEE-ecCCcE
Q 043350 107 QHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CT-------DTQLWA-GQECGV 177 (1133)
Q Consensus 107 ~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~-------dg~lla-s~Dg~V 177 (1133)
....++||+.+||.+...|+|+++|.. |.. +..+.+-.......+..|..+. .+ .-.+++ ..+|.+
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~----g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L 121 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLM----GSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL 121 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecc----cce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence 346789999999999999999999988 555 5555543322223344565554 11 225666 888888
Q ss_pred EEeeCCCC-CCcCcCCCccccCCCCCCCceeeccC-CCCeEEEEEeCCCCEEEEEeCC-----------CeEEEEeCCCC
Q 043350 178 RFWNLEDS-YEPGAGIGGRVRRGDEDAAPFYESAN-TSPTMCLMVDCGNRLVWTGHKD-----------GKIRSWKMDQT 244 (1133)
Q Consensus 178 rvWdl~~~-~~~~~gh~~~v~~g~~~~~~~~~~~h-~s~V~~la~spd~~~LaSgs~D-----------g~V~vWd~~~~ 244 (1133)
+-+-+... ..... +...+.+..| ...|.++.++|.-++|+.||.. .-+..|++-.+
T Consensus 122 ~Sy~vs~gt~q~y~-----------e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~ 190 (282)
T PF15492_consen 122 RSYLVSVGTNQGYQ-----------ENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSD 190 (282)
T ss_pred eeEEEEcccCCcce-----------eeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCC
Confidence 88776321 11110 1112333333 5689999999988888777631 13677876322
Q ss_pred CC---------CC----CC--Cccccccc------ccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCC
Q 043350 245 LD---------DA----NN--PFKEGLSW------QAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESI 293 (1133)
Q Consensus 245 ~~---------~~----~~--~~~~~~~l------~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~ 293 (1133)
.. +. .. .+..+..+ ..-...|..|..||+|. |++...+|.|.+|++...
T Consensus 191 ~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 191 SPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred CCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 10 00 00 00111111 12367899999999999 999999999999999763
No 324
>PTZ00297 pantothenate kinase; Provisional
Probab=97.36 E-value=0.0065 Score=81.54 Aligned_cols=43 Identities=19% Similarity=0.205 Sum_probs=30.2
Q ss_pred cccceeEEEEEEEc----C-eEEEEEecccccChHHHHHHHHHHHHHHH
Q 043350 694 IGNKGGVGLRIRVY----D-RTICFVNCHLAAHLEAVNRRNADYDHIYR 737 (1133)
Q Consensus 694 ~gnKG~v~~r~~~~----~-~~~~fvn~Hlaa~~~~~~~Rn~d~~~i~~ 737 (1133)
..+||.+-+.+.+. + ..+-|+|.||.+..... .|.++..+|.+
T Consensus 130 ~~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~~~-~R~~Q~~ql~~ 177 (1452)
T PTZ00297 130 SVRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDSLP-STSSQVQETRR 177 (1452)
T ss_pred ccccceEEEEEEccccCCCCceEEEEEeCCCCCCCcc-hHHHHHHHHHH
Confidence 45899999999984 2 57999999999875432 23444555543
No 325
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.0067 Score=73.08 Aligned_cols=174 Identities=14% Similarity=0.200 Sum_probs=106.4
Q ss_pred CeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCC
Q 043350 214 PTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWES 292 (1133)
Q Consensus 214 ~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~ 292 (1133)
.++|++++ ++.|+-|.-+|.|++.+.++ .. .+...|+.. .-.|. ++|||.||+|.|-.+-+
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~---------~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~ 102 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQG---------NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFT 102 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCC---------cc-ccccccccc------ccCCceEEEecCCCcEEEeeccC
Confidence 46666664 67899999999999999887 22 344445433 45688 99999999988765421
Q ss_pred CceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecC
Q 043350 293 IEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIE 372 (1133)
Q Consensus 293 ~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h 372 (1133)
+ +...++. -
T Consensus 103 --------~--------------------------------------------------------------~~~~~~d-f 111 (846)
T KOG2066|consen 103 --------D--------------------------------------------------------------DEITQYD-F 111 (846)
T ss_pred --------C--------------------------------------------------------------ccceeEe-c
Confidence 0 1011111 1
Q ss_pred CcceeEEEeCCC-----CCccccccceEEEEeeCCCCccc---cccccccce-eeccCCceEEEEEecCCcccCCCCCEE
Q 043350 373 GHIENRVDTQSV-----QDQPVEDEMKVKFVSSNKKEKPH---GFLQRSRNA-IMGAADAVRRVATRGAGAFVDDTKRTE 443 (1133)
Q Consensus 373 ~~~v~~l~~sp~-----g~~~~e~e~~v~lasgs~Dg~i~---~~~~~~~~~-~~~~~~~V~~v~~~p~g~~~~h~~~V~ 443 (1133)
..++.+++++|+ .++ +++|+..|-+. .|.++...+ +. ...++|.
T Consensus 112 ~rpiksial~Pd~~~~~sk~---------fv~GG~aglvL~er~wlgnk~~v~l~------------------~~eG~I~ 164 (846)
T KOG2066|consen 112 KRPIKSIALHPDFSRQQSKQ---------FVSGGMAGLVLSERNWLGNKDSVVLS------------------EGEGPIH 164 (846)
T ss_pred CCcceeEEeccchhhhhhhh---------eeecCcceEEEehhhhhcCccceeee------------------cCccceE
Confidence 235667788887 224 88999998433 555553332 22 3334455
Q ss_pred EEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE-------EecCCCEEEEEecCCeEEEEeCC
Q 043350 444 AMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC-------FCTYGSRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 444 sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~-------fs~dg~~Lasgs~DG~I~vwd~~ 507 (1133)
++.+. | +++-++.+| |++||. .++.+..+......+.. +-.+...|+.|=.| +|+|..++
T Consensus 165 ~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 165 SIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGD-SVKICSIK 233 (846)
T ss_pred EEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCC-eEEEEEEe
Confidence 55443 4 566666665 899999 55666666554343432 22344566766554 78888876
No 326
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.021 Score=63.79 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=61.7
Q ss_pred cCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEE
Q 043350 210 ANTSPTMCLMVDCGNR-LVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIK 286 (1133)
Q Consensus 210 ~h~s~V~~la~spd~~-~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~ 286 (1133)
.+...|..++|+|..+ ++..++.+.+|+|.|++.. ..+..+..| ..+++++|.-+.. |..|-..|.|.
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~--------~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vl 261 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS--------CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVL 261 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccc--------eeeeheecc-CCceeeeeccCCcceeEEeccCceEE
Confidence 4566788999999665 8899999999999999871 234455666 8999999998877 88888999999
Q ss_pred EEeCCCC
Q 043350 287 IWPWESI 293 (1133)
Q Consensus 287 iWdl~~~ 293 (1133)
|+|++..
T Consensus 262 vyD~R~~ 268 (463)
T KOG1645|consen 262 VYDMRQP 268 (463)
T ss_pred EEEccCC
Confidence 9999863
No 327
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.99 E-value=0.48 Score=56.07 Aligned_cols=57 Identities=12% Similarity=0.160 Sum_probs=43.4
Q ss_pred CCeEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE-EecCCCEEEEEecCCeEEEEeC
Q 043350 450 DGMIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC-FCTYGSRMYVGYVSGYLQILDL 506 (1133)
Q Consensus 450 dg~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~-fs~dg~~Lasgs~DG~I~vwd~ 506 (1133)
++.|+.++.||.|.+.|. +|+.+.........+.+ -...+..|++++.||.|+.+++
T Consensus 335 ~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 335 NGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEeC
Confidence 568889999999999999 78888877664444554 1123557999999999998864
No 328
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.062 Score=65.50 Aligned_cols=156 Identities=13% Similarity=0.162 Sum_probs=99.0
Q ss_pred ccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccce-EEEEEeCCC-CeEE--ecCC-----cEEEe
Q 043350 110 PFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRF-LRNIACTDT-QLWA--GQEC-----GVRFW 180 (1133)
Q Consensus 110 ~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~-V~~v~s~dg-~lla--s~Dg-----~VrvW 180 (1133)
.+++.+..++-|+.+|.|-+.+.. -+. +..++.++. . |..+...++ .+|+ +.|. .|+||
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s----~~~-~~~fqa~~~-------siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw 97 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS----FQL-IRGFQAYEQ-------SIVQFLYILNKQNFLFSVGEDEQGNPVLLKIW 97 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc----cee-eehheecch-------hhhhHhhcccCceEEEEEeecCCCCceEEEEe
Confidence 357888899999999998777654 222 356666666 3 434443344 4444 4443 59999
Q ss_pred eCCCCCCcC-----cCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccc
Q 043350 181 NLEDSYEPG-----AGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEG 255 (1133)
Q Consensus 181 dl~~~~~~~-----~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~ 255 (1133)
+++.....- ..|. ..+........|+.+++.+.+-+.+|.|-.+|.|..+.-+-... +-.
T Consensus 98 ~lek~~~n~sP~c~~~~r---------i~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RD------rgs 162 (933)
T KOG2114|consen 98 DLEKVDKNNSPQCLYEHR---------IFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRD------RGS 162 (933)
T ss_pred cccccCCCCCcceeeeee---------eeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhc------ccc
Confidence 998742211 0011 00000112356899999999999999999999999987543111 111
Q ss_pred cccccC--CCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCC
Q 043350 256 LSWQAH--RGPVLAMIFSSQGD-LWSGGEGGVIKIWPWES 292 (1133)
Q Consensus 256 ~~l~gH--~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~ 292 (1133)
..-..| ..+|+++++..++. ++-+..-..|.+|.+.+
T Consensus 163 r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g 202 (933)
T KOG2114|consen 163 RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG 202 (933)
T ss_pred ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecC
Confidence 112223 68999999999988 45555566788888865
No 329
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.73 E-value=0.45 Score=51.53 Aligned_cols=176 Identities=15% Similarity=0.202 Sum_probs=99.5
Q ss_pred cCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEE
Q 043350 350 AQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVAT 429 (1133)
Q Consensus 350 s~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~ 429 (1133)
..++.+..||..+|+.+..+.......... . ..+.. ++.++.++.+..++..... ..|....
T Consensus 43 ~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~-~~~~~---------v~v~~~~~~l~~~d~~tG~-------~~W~~~~ 104 (238)
T PF13360_consen 43 SGDGNLYALDAKTGKVLWRFDLPGPISGAP-V-VDGGR---------VYVGTSDGSLYALDAKTGK-------VLWSIYL 104 (238)
T ss_dssp ETTSEEEEEETTTSEEEEEEECSSCGGSGE-E-EETTE---------EEEEETTSEEEEEETTTSC-------EEEEEEE
T ss_pred cCCCEEEEEECCCCCEEEEeecccccccee-e-ecccc---------cccccceeeeEecccCCcc-------eeeeecc
Confidence 478889999999999988877633322121 1 12223 4455566655433322111 1233211
Q ss_pred ecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcc----------eeE--EecCCCEEEEE
Q 043350 430 RGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCA----------VQC--FCTYGSRMYVG 495 (1133)
Q Consensus 430 ~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~----------V~~--fs~dg~~Lasg 495 (1133)
.... ... ..........+ .++.+..+|.|..+|. +|+.+.....+... +.+ +..++ .++++
T Consensus 105 ~~~~---~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~ 179 (238)
T PF13360_consen 105 TSSP---PAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVS 179 (238)
T ss_dssp -SSC---TCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEE
T ss_pred cccc---ccc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEE
Confidence 1000 000 01111111124 7888888999999998 78888887664422 122 33334 78888
Q ss_pred ecCCeEEEEeCCCCcceeeeccccCeEE-eeecccceeeecccCCeeeccccCCC
Q 043350 496 YVSGYLQILDLDGNLTASWIAHSSPVLK-LAVGVDHIYSLAAHGGIRGWTFTSPS 549 (1133)
Q Consensus 496 s~DG~I~vwd~~g~~l~~~~~H~~~V~~-l~fs~~~L~S~s~Dg~I~lW~l~s~~ 549 (1133)
+.+|.+.-+|+...... |......+.. +...+..|+.++.++.|..||+.+..
T Consensus 180 ~~~g~~~~~d~~tg~~~-w~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 180 SGDGRVVAVDLATGEKL-WSKPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp CCTSSEEEEETTTTEEE-EEECSS-ECECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCCEE-EEecCCCccCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 88885433398754332 5444444444 45558888888899999999987753
No 330
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.71 E-value=0.22 Score=54.64 Aligned_cols=218 Identities=14% Similarity=0.046 Sum_probs=119.5
Q ss_pred ccCC-CCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEEecCCcEEEeeCCCC-C
Q 043350 110 PFQP-MVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWAGQECGVRFWNLEDS-Y 186 (1133)
Q Consensus 110 ~~~p-~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~llas~Dg~VrvWdl~~~-~ 186 (1133)
.+.+ ++.++.+--..+.|..|+.. +.. ...+. .+. +...+. .+++.++++..+.+.++|+.+. .
T Consensus 6 ~~d~~~g~l~~~D~~~~~i~~~~~~----~~~-~~~~~-~~~-------~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~ 72 (246)
T PF08450_consen 6 VWDPRDGRLYWVDIPGGRIYRVDPD----TGE-VEVID-LPG-------PNGMAFDRPDGRLYVADSGGIAVVDPDTGKV 72 (246)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETT----TTE-EEEEE-SSS-------EEEEEEECTTSEEEEEETTCEEEEETTTTEE
T ss_pred EEECCCCEEEEEEcCCCEEEEEECC----CCe-EEEEe-cCC-------CceEEEEccCCEEEEEEcCceEEEecCCCcE
Confidence 3465 77888888888888888877 332 21111 111 222233 4788888877777788887662 1
Q ss_pred CcCcCCCccccCCCCCCCceeecc-CCCCeEEEEEeCCCCEEEEEeCC--------CeEEEEeCCCCCCCCCCCcccccc
Q 043350 187 EPGAGIGGRVRRGDEDAAPFYESA-NTSPTMCLMVDCGNRLVWTGHKD--------GKIRSWKMDQTLDDANNPFKEGLS 257 (1133)
Q Consensus 187 ~~~~gh~~~v~~g~~~~~~~~~~~-h~s~V~~la~spd~~~LaSgs~D--------g~V~vWd~~~~~~~~~~~~~~~~~ 257 (1133)
..+. ...... .....+.++++++|++.++-... |.|..++.+. + +..
T Consensus 73 ~~~~--------------~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~---------~-~~~ 128 (246)
T PF08450_consen 73 TVLA--------------DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDG---------K-VTV 128 (246)
T ss_dssp EEEE--------------EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTS---------E-EEE
T ss_pred EEEe--------------eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCC---------e-EEE
Confidence 1110 000011 33457889999999977766543 3455555553 2 122
Q ss_pred cccCCCCeEEEEEeeCCc-E-EEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCe
Q 043350 258 WQAHRGPVLAMIFSSQGD-L-WSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEI 335 (1133)
Q Consensus 258 l~gH~~~V~sl~fsp~g~-L-~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~ 335 (1133)
+...-..-+.|+|+|+++ | ++-+..+.|..+++......+. ... .++++.... ..++.
T Consensus 129 ~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~----~~~--------~~~~~~~~~--------g~pDG 188 (246)
T PF08450_consen 129 VADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELS----NRR--------VFIDFPGGP--------GYPDG 188 (246)
T ss_dssp EEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEE----EEE--------EEEE-SSSS--------CEEEE
T ss_pred EecCcccccceEECCcchheeecccccceeEEEecccccccee----eee--------eEEEcCCCC--------cCCCc
Confidence 222345568999999998 5 4667788888887753111000 000 011111000 01222
Q ss_pred EEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeC-CCCC
Q 043350 336 KCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQ-SVQD 386 (1133)
Q Consensus 336 ~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~s-p~g~ 386 (1133)
..+ ..++++.+-....+.|.++|.. |+++..+......+++++|. ++..
T Consensus 189 ~~v-D~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~ 238 (246)
T PF08450_consen 189 LAV-DSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGK 238 (246)
T ss_dssp EEE-BTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSS
T ss_pred ceE-cCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCC
Confidence 222 2233333332467888888877 99999888776688899994 4444
No 331
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=96.71 E-value=0.0042 Score=68.42 Aligned_cols=222 Identities=18% Similarity=0.147 Sum_probs=115.5
Q ss_pred HHhhhcCCCCcEEE-EeeeecceEEEEEEEecccccccCcee-----ecccccccccccccceeEEEEEEEcCeEEEEEe
Q 043350 642 TIGKALDEGTTFER-MGSRQLAGLLISFWVRKNLRTHVGDVD-----AAAVPCGFGRAIGNKGGVGLRIRVYDRTICFVN 715 (1133)
Q Consensus 642 ~~~~~l~~~~~y~~-v~~~~l~g~~l~v~~~~~~~~~i~~v~-----~~~v~~G~~~~~gnKG~v~~r~~~~~~~~~fvn 715 (1133)
.|++.+...+.|.. ++|--| |-.|+||.|-.+....-+.- ...+--| --.|-||---+++.+.+..+.+-|
T Consensus 58 ~L~~~~ss~yPysh~FHSGim-GaGL~vfSK~PI~~t~~~~y~lNG~p~~i~rG--DWf~GK~Vgl~~l~~~g~~v~~yn 134 (422)
T KOG3873|consen 58 YLQSGCSSVYPYSHYFHSGIM-GAGLCVFSKHPILETLFHRYSLNGYPHAIHRG--DWFGGKGVGLTVLLVGGRMVNLYN 134 (422)
T ss_pred HHHHhccccCchHHhhhcccc-cCceEEeecCchhhhhhhccccCCccceeeec--cccccceeEEEEEeeCCEEeeeee
Confidence 44444444444443 555545 88899999998754322211 1111112 235788888888999999999999
Q ss_pred cccccChH-----HHHHHHHHHHHHHHhCccCCCCCcccccccccccccccccccCCcccCCCCCCCCCCCCccEEEEEc
Q 043350 716 CHLAAHLE-----AVNRRNADYDHIYRNMVFSRSTSTLNSASAGVSTAVNMMKTSNTTTTLNTEETKPDLAEADMVIFFG 790 (1133)
Q Consensus 716 ~Hlaa~~~-----~~~~Rn~d~~~i~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~G 790 (1133)
.||-|--+ .+--|-.+.-++.+=+.-. -...|.|+..|
T Consensus 135 tHLHAeY~rq~D~YL~HR~~QAwdlaqfi~~t-------------------------------------~q~~~vVI~~G 177 (422)
T KOG3873|consen 135 THLHAEYDRQNDEYLCHRVAQAWDLAQFIRAT-------------------------------------RQNADVVILAG 177 (422)
T ss_pred hhccccccccCchhhhHHHHHHHHHHHHHHHH-------------------------------------hcCCcEEEEec
Confidence 99976532 3555654444443322100 02468999999
Q ss_pred cCCccccCCChHHHH--HhhccCChhHhhccchhHHHHHcCCcccCcccccccCCCCccccCCCCCCCCccCCCCccccc
Q 043350 791 DFNYRLFGISYDEAR--DFVSQRCFDWLREKDQLRAEMKAGKVFQGMREAIIRFPPTYKFERHRPGLAGYDSGEKKRIPA 868 (1133)
Q Consensus 791 DlNyRi~~~~~~~~~--~~~~~~~~~~Ll~~DqL~~~~~~~~~f~g~~E~~i~F~PTYK~~~~~~~~~~yd~s~k~R~Ps 868 (1133)
|||-+=..++..-.. .++ ..|..| --||+...-.+..-|++..|+.-+=-| .+.|-+ ..+|.|-
T Consensus 178 DLN~~P~dl~~~ll~~a~l~--daw~~~-h~~q~e~~~~r~s~~~~l~~g~tcd~~----------~N~y~~-aqk~~dd 243 (422)
T KOG3873|consen 178 DLNMQPQDLGHKLLLSAGLV--DAWTSL-HLDQCESDSFRLSEDKELVEGNTCDSP----------LNCYTS-AQKREDD 243 (422)
T ss_pred CCCCCccccceeeeeccchh--hhHhhh-chhhhcCcccccchhhhhhcCCcccCc----------chhhhH-HHhCCCC
Confidence 999998776643222 111 011111 123332211122224455566411111 123432 1122221
Q ss_pred --c--cceeeeecCCCCCCccCCCCCcceeeeeeeeeccccCCCCCccccceEEEEEee
Q 043350 869 --W--CDRIIYRDSRSTPVSECSLECPVVSSILLYDAVMDVTESDHKPVHCKFHVKIAH 923 (1133)
Q Consensus 869 --w--cDRIL~~~~~~~~~~~~~~~~~~~~~~~~Y~s~~~~~~SDHkPV~a~f~~~~~~ 923 (1133)
= -|-|||+... |+..+..+.-....--+.+...|||--+.|.+.|.-..
T Consensus 244 p~~~RiDYvl~k~~~------~~~~~a~~~~t~~rvP~~d~s~SDH~Al~a~L~I~~~~ 296 (422)
T KOG3873|consen 244 PLGKRIDYVLVKPGD------CNAKIAEVEFTEPRVPGEDCSYSDHEALMATLKIFKQP 296 (422)
T ss_pred ccceeeeEEEEcCcc------eEEEeeeEEecCCCCCCCCCCccchhhheeEEEeecCC
Confidence 1 2888888643 22211111000112224567889999999999887553
No 332
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.70 E-value=0.66 Score=49.46 Aligned_cols=99 Identities=14% Similarity=0.141 Sum_probs=54.1
Q ss_pred CCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEEeCCCCeEE--ecCCcEEEeeCCCCCCcCcCC
Q 043350 115 VEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIACTDTQLWA--GQECGVRFWNLEDSYEPGAGI 192 (1133)
Q Consensus 115 g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh 192 (1133)
..++..||..|.+..-|..+ |+. .++.- .|..+.+-+.--|.+++ ...|.+.+-+..+....+
T Consensus 23 kT~v~igSHs~~~~avd~~s---G~~---~We~i------lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w--- 87 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQS---GNL---IWEAI------LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIW--- 87 (354)
T ss_pred ceEEEEecCCceEEEecCCC---CcE---Eeehh------hCceeeeeeEEECCEEEEEEccCcEEEEEecchhhee---
Confidence 34677788888877776653 333 11111 11122222211233344 677777777766632222
Q ss_pred CccccCCCCCCCceeeccCCCCeEE-EEEeCCCCEEEEEeCCCeEEEEeCCC
Q 043350 193 GGRVRRGDEDAAPFYESANTSPTMC-LMVDCGNRLVWTGHKDGKIRSWKMDQ 243 (1133)
Q Consensus 193 ~~~v~~g~~~~~~~~~~~h~s~V~~-la~spd~~~LaSgs~Dg~V~vWd~~~ 243 (1133)
.++. ...|-+ ...++++.+++.|+.|++...-|...
T Consensus 88 ------------~f~~---~~~vk~~a~~d~~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 88 ------------NFVI---LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred ------------eeee---hhhhccceEEcCCCceEEEecCCCcEEEecccc
Confidence 1111 011111 12356899999999999999999876
No 333
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=96.67 E-value=0.0049 Score=67.29 Aligned_cols=130 Identities=15% Similarity=0.142 Sum_probs=87.5
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEee-CCc-EEEEeCCCcEEEE
Q 043350 211 NTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSS-QGD-LWSGGEGGVIKIW 288 (1133)
Q Consensus 211 h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp-~g~-L~Sgs~DgtI~iW 288 (1133)
..+.|.++.|...++++..|...|.|.+.|++.... .+ .......-|...|++|.... +++ |++.+.+|+|++|
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq--G~--~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLy 326 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ--GN--GWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLY 326 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeeccc--CC--CcceEEEEcCcchhhhhhhccccceEeeccCcCceeEe
Confidence 345788888888899999999999999999985211 11 12223345889999998877 566 9999999999999
Q ss_pred eCCCC-----ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCC
Q 043350 289 PWESI-----EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSK 363 (1133)
Q Consensus 289 dl~~~-----~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg 363 (1133)
|++.. +.....|-.... -+..+..++...+++. +.|...++|.+..|
T Consensus 327 D~R~~K~~~~V~qYeGHvN~~a--------------------~l~~~v~~eeg~I~s~--------GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 327 DLRATKCKKSVMQYEGHVNLSA--------------------YLPAHVKEEEGSIFSV--------GDDCYTRIWSLDSG 378 (425)
T ss_pred eehhhhcccceeeeeccccccc--------------------ccccccccccceEEEc--------cCeeEEEEEecccC
Confidence 99852 111111111100 0011123344444455 78888999999999
Q ss_pred ceeEEEecC
Q 043350 364 ELLKVFNIE 372 (1133)
Q Consensus 364 ~~l~~~~~h 372 (1133)
.++.+++..
T Consensus 379 hLl~tipf~ 387 (425)
T KOG2695|consen 379 HLLCTIPFP 387 (425)
T ss_pred ceeeccCCC
Confidence 999887654
No 334
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.66 E-value=0.0047 Score=72.54 Aligned_cols=73 Identities=14% Similarity=0.153 Sum_probs=60.7
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEE
Q 043350 210 ANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIW 288 (1133)
Q Consensus 210 ~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iW 288 (1133)
...+.|.|++++|+...|+.|+.||.|.+||... . +..+..+.-..+.++|+|+|. ++.|+.-|.+.+|
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~---------~-~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~F 326 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTR---------G-VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCF 326 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCC---------C-eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEE
Confidence 3567899999999999999999999999999875 1 122333445578999999999 9999999999999
Q ss_pred eCCC
Q 043350 289 PWES 292 (1133)
Q Consensus 289 dl~~ 292 (1133)
|+.-
T Consensus 327 D~AL 330 (545)
T PF11768_consen 327 DMAL 330 (545)
T ss_pred Eeec
Confidence 9853
No 335
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.43 E-value=0.27 Score=53.36 Aligned_cols=187 Identities=14% Similarity=0.125 Sum_probs=96.9
Q ss_pred eCCcEEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecC
Q 043350 272 SQGDLWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQ 351 (1133)
Q Consensus 272 p~g~L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~ 351 (1133)
.++.+++++.++.|..||..++.........+.. ... ....++.+.+. ..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~-------------------~~~----------~~~~~~~v~v~-~~ 84 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPI-------------------SGA----------PVVDGGRVYVG-TS 84 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCG-------------------GSG----------EEEETTEEEEE-ET
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccc-------------------cce----------eeecccccccc-cc
Confidence 3444888899999999998765333322221110 000 01112222222 24
Q ss_pred CCceeEeecCCCceeEEE-ecCCcc---eeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEE
Q 043350 352 PLSFSLWDARSKELLKVF-NIEGHI---ENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRV 427 (1133)
Q Consensus 352 d~~I~lWD~~tg~~l~~~-~~h~~~---v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v 427 (1133)
++.+..+|+.+|+.+... ...... .........+.. ++.+..++.+..++.+.-. .++..
T Consensus 85 ~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~g~l~~~d~~tG~-------~~w~~ 148 (238)
T PF13360_consen 85 DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDR---------LYVGTSSGKLVALDPKTGK-------LLWKY 148 (238)
T ss_dssp TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTE---------EEEEETCSEEEEEETTTTE-------EEEEE
T ss_pred eeeeEecccCCcceeeeeccccccccccccccCceEecCE---------EEEEeccCcEEEEecCCCc-------EEEEe
Confidence 668888999999998874 332111 112222222555 6677767777633322111 11222
Q ss_pred EEecCCcccC---CCCCEEEEEECCCCeEEEEecCCe-EEEEeC-CCCeeEEEecCCcceeE-EecCCCEEEEEecCCeE
Q 043350 428 ATRGAGAFVD---DTKRTEAMVLTADGMIWSGCTNGL-LVQWDG-NGNRVSDILHHQCAVQC-FCTYGSRMYVGYVSGYL 501 (1133)
Q Consensus 428 ~~~p~g~~~~---h~~~V~sl~~spdg~L~sgs~DG~-I~vWd~-~g~~l~~~~~h~~~V~~-fs~dg~~Lasgs~DG~I 501 (1133)
... ...... ....+..-....++.++.++.+|. +.+ |. +|+.+.... ...+.. ....+..|++++.++.|
T Consensus 149 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~~~~~~~~l~~~~~~~~l 224 (238)
T PF13360_consen 149 PVG-EPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYSLPSVDGGTLYVTSSDGRL 224 (238)
T ss_dssp ESS-TT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECECEECCCTEEEEEETTTEE
T ss_pred ecC-CCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccCCceeeCCEEEEEeCCCEE
Confidence 111 000000 001112222333457777777775 555 98 555554333 333555 78889999999999999
Q ss_pred EEEeCCC
Q 043350 502 QILDLDG 508 (1133)
Q Consensus 502 ~vwd~~g 508 (1133)
..||++.
T Consensus 225 ~~~d~~t 231 (238)
T PF13360_consen 225 YALDLKT 231 (238)
T ss_dssp EEEETTT
T ss_pred EEEECCC
Confidence 9999874
No 336
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.38 E-value=0.063 Score=64.87 Aligned_cols=68 Identities=18% Similarity=0.301 Sum_probs=59.8
Q ss_pred eEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCccccc-ccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCC
Q 043350 215 TMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGL-SWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWE 291 (1133)
Q Consensus 215 V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~-~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~ 291 (1133)
+.+++|+|..-.|+.|-.-|.+.+|.... ++.+ ....|..+|..+.||++|. |+|+..-|.|.+|..+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~---------~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNT---------TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCC---------ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 56699999999999999999999999886 3333 3457999999999999999 9999999999999887
No 337
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.31 E-value=0.22 Score=59.87 Aligned_cols=110 Identities=19% Similarity=0.237 Sum_probs=76.2
Q ss_pred eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 043350 164 CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKM 241 (1133)
Q Consensus 164 s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~ 241 (1133)
...+++++ +.-|.|.+|+-.+..... ....+..+.+..+..+++..++|.|+..|.|.++-+
T Consensus 42 dst~~~l~~GsS~G~lyl~~R~~~~~~~----------------~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql 105 (726)
T KOG3621|consen 42 DATEEYLAMGSSAGSVYLYNRHTGEMRK----------------LKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQL 105 (726)
T ss_pred ecCCceEEEecccceEEEEecCchhhhc----------------ccccCccceEEEEEecchhHhhhhhcCCceEEeehh
Confidence 44556666 677899999876622111 111223445667778888999999999999999988
Q ss_pred CCCCCCCCCCccccc-ccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCC
Q 043350 242 DQTLDDANNPFKEGL-SWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWES 292 (1133)
Q Consensus 242 ~~~~~~~~~~~~~~~-~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~ 292 (1133)
..... .....+. .-+.|...|++++|++++. +++|...|+|..-.++.
T Consensus 106 ~~~~p---~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 106 NKELP---RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hccCC---CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 75221 1001111 1133788999999999999 99999999998887765
No 338
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.31 E-value=0.1 Score=61.64 Aligned_cols=73 Identities=15% Similarity=0.182 Sum_probs=56.5
Q ss_pred CCCCCEEEEEECCCC-eEEEEecCCeEEEEeCCCCeeEEEecCCc-ceeEEecCCCEEEEEecCCeEEEEeCCCC
Q 043350 437 DDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGNGNRVSDILHHQC-AVQCFCTYGSRMYVGYVSGYLQILDLDGN 509 (1133)
Q Consensus 437 ~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g~~l~~~~~h~~-~V~~fs~dg~~Lasgs~DG~I~vwd~~g~ 509 (1133)
.....+.+++++|+. .++.|+.||.|.+||.........+..-. ...+|+|+|..+++|+.-|.+++||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 456789999999999 99999999999999985433222222111 22239999999999999999999998643
No 339
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.31 E-value=0.11 Score=62.87 Aligned_cols=68 Identities=10% Similarity=0.095 Sum_probs=52.4
Q ss_pred EEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCe
Q 043350 159 LRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGK 235 (1133)
Q Consensus 159 V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~ 235 (1133)
+++++ .|..-+|+ -.-|.+.+|...+... |. +...|..+|.-+.||++|..++|+..=|.
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~----ht-------------v~~th~a~i~~l~wS~~G~~l~t~d~~g~ 124 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET----HT-------------VVETHPAPIQGLDWSHDGTVLMTLDNPGS 124 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCcee----ee-------------eccCCCCCceeEEecCCCCeEEEcCCCce
Confidence 44566 77777777 3467889998765311 11 34468889999999999999999999999
Q ss_pred EEEEeCCC
Q 043350 236 IRSWKMDQ 243 (1133)
Q Consensus 236 V~vWd~~~ 243 (1133)
|.+|..+.
T Consensus 125 v~lwr~d~ 132 (1416)
T KOG3617|consen 125 VHLWRYDV 132 (1416)
T ss_pred eEEEEeee
Confidence 99999873
No 340
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=96.21 E-value=0.027 Score=53.31 Aligned_cols=63 Identities=29% Similarity=0.545 Sum_probs=46.6
Q ss_pred EEecC-eEEeccc----ceEEEEEEECCccceEEEEEeecCCCcccCCCCCCccccCCCcCCCCceEEecCceEECCCCe
Q 043350 958 IVSTE-SIILQNQ----DTCTLRITNKSAQEKAIFKIICDGQSTVKDDGDASDYRLRGSFGFPRWLEVTPAAGVIKPDSY 1032 (1133)
Q Consensus 958 ~~~~~-~~~~~~~----~~~~~~i~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~p~~~~~~p~~~ 1032 (1133)
.|+.. .|.|... ....|+|+|++.. +..|.|.+. .|.-+.|.|..|+|.||++
T Consensus 3 ~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~-~i~fKiktt---------------------~~~~y~v~P~~G~i~p~~~ 60 (109)
T PF00635_consen 3 SVEPSELIFFNAPFNKQQSCELTLTNPSDK-PIAFKIKTT---------------------NPNRYRVKPSYGIIEPGES 60 (109)
T ss_dssp EEESSSEEEEESSTSS-EEEEEEEEE-SSS-EEEEEEEES----------------------TTTEEEESSEEEE-TTEE
T ss_pred EEeCCcceEEcCCCCceEEEEEEEECCCCC-cEEEEEEcC---------------------CCceEEecCCCEEECCCCE
Confidence 45555 4555442 5678999999998 899999762 2567899999999999999
Q ss_pred EEEEEEEeec
Q 043350 1033 IEVSVHHEEF 1042 (1133)
Q Consensus 1033 ~~~~~~~~~~ 1042 (1133)
++|.|.....
T Consensus 61 ~~i~I~~~~~ 70 (109)
T PF00635_consen 61 VEITITFQPF 70 (109)
T ss_dssp EEEEEEE-SS
T ss_pred EEEEEEEEec
Confidence 9999986553
No 341
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.20 E-value=0.95 Score=54.64 Aligned_cols=68 Identities=15% Similarity=0.161 Sum_probs=49.4
Q ss_pred eEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccc--cCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCC
Q 043350 215 TMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQ--AHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWE 291 (1133)
Q Consensus 215 V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~--gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~ 291 (1133)
|.--+++..+++++.|+.-|.+.+++-.+ .+...++ +-.+.+..+..+++.. ++.|+..|.|.++.+.
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~---------~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHT---------GEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLN 106 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCc---------hhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhh
Confidence 44445566789999999999999999876 2222222 2455666777888777 8888888888888765
No 342
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.15 E-value=0.007 Score=63.18 Aligned_cols=96 Identities=13% Similarity=0.156 Sum_probs=65.2
Q ss_pred eEEEEecCCeEEEEeCC--CCeeEEEecCCcceeEEec---CCCEEEEEecCCeEEEEeCCC-Ccceeeeccc-cCeEEe
Q 043350 452 MIWSGCTNGLLVQWDGN--GNRVSDILHHQCAVQCFCT---YGSRMYVGYVSGYLQILDLDG-NLTASWIAHS-SPVLKL 524 (1133)
Q Consensus 452 ~L~sgs~DG~I~vWd~~--g~~l~~~~~h~~~V~~fs~---dg~~Lasgs~DG~I~vwd~~g-~~l~~~~~H~-~~V~~l 524 (1133)
.++.|+.+|.|.+|..+ |.....+..-...|.|.-| ++.+..+++.||.|+.|++.- +.+.....|. .++..+
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence 78999999999999885 3333333334455666333 344888999999999999974 4555445566 455544
Q ss_pred eec--ccceeee--cccCCeeeccccC
Q 043350 525 AVG--VDHIYSL--AAHGGIRGWTFTS 547 (1133)
Q Consensus 525 ~fs--~~~L~S~--s~Dg~I~lW~l~s 547 (1133)
... ++.|.+. |.|..++.|++..
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhh
Confidence 444 6666666 7777777777654
No 343
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.09 E-value=0.083 Score=64.70 Aligned_cols=141 Identities=18% Similarity=0.254 Sum_probs=93.0
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeC---------CCcEEEEeCC
Q 043350 222 CGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGE---------GGVIKIWPWE 291 (1133)
Q Consensus 222 pd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~---------DgtI~iWdl~ 291 (1133)
.+++.+.+|...|+|.+-|... ++.++++.+|++.|..+.. .|+ |+|||. |.-|+|||++
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s--------~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLR 254 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNS--------FETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLR 254 (1118)
T ss_pred ecCcEEEeecccceEEeecCCc--------Cceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhh
Confidence 3689999999999999999886 4778899999999986654 588 999985 5668999998
Q ss_pred CC--ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCC-CCeEEEEecCCceEEEecCCCceeEeecC-CCce--
Q 043350 292 SI--EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISS-TEIKCMLSDHARARVWCAQPLSFSLWDAR-SKEL-- 365 (1133)
Q Consensus 292 ~~--~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~-~~~~~l~S~d~~i~vwss~d~~I~lWD~~-tg~~-- 365 (1133)
.. ...+.++.... ++. .+|. ....+++ +..|.+.+-|.. .+.+
T Consensus 255 mmral~PI~~~~~P~----------flr-----------f~Psl~t~~~V~----------S~sGq~q~vd~~~lsNP~~ 303 (1118)
T KOG1275|consen 255 MMRALSPIQFPYGPQ----------FLR-----------FHPSLTTRLAVT----------SQSGQFQFVDTATLSNPPA 303 (1118)
T ss_pred hhhccCCcccccCch----------hhh-----------hcccccceEEEE----------ecccceeeccccccCCCcc
Confidence 62 22222222221 111 1121 1122222 345566666632 1222
Q ss_pred -eEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccccc
Q 043350 366 -LKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQR 412 (1133)
Q Consensus 366 -l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~ 412 (1133)
+..+...+..+..+++|++++. ++.|..+|.|..|..+
T Consensus 304 ~~~~v~p~~s~i~~fDiSsn~~a---------lafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 304 GVKMVNPNGSGISAFDISSNGDA---------LAFGDHEGHVNLWADR 342 (1118)
T ss_pred ceeEEccCCCcceeEEecCCCce---------EEEecccCcEeeecCC
Confidence 2334444555899999999999 9999999999865543
No 344
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.93 E-value=0.01 Score=42.71 Aligned_cols=37 Identities=35% Similarity=0.655 Sum_probs=32.3
Q ss_pred ccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEe
Q 043350 253 KEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWP 289 (1133)
Q Consensus 253 ~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWd 289 (1133)
.....+.+|...|+++.|.+.+. +++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34556678999999999999888 99999999999996
No 345
>PRK04043 tolB translocation protein TolB; Provisional
Probab=95.80 E-value=0.7 Score=55.00 Aligned_cols=105 Identities=11% Similarity=-0.040 Sum_probs=58.6
Q ss_pred EEE-eCCCCe-EE--ec---CCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEE-EEeC
Q 043350 161 NIA-CTDTQL-WA--GQ---ECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVW-TGHK 232 (1133)
Q Consensus 161 ~v~-s~dg~l-la--s~---Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~La-Sgs~ 232 (1133)
.-. +|||+. ++ +. +..|.++|+.+.... ......+.+.+..|+|||+.|+ +.+.
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~------------------~lt~~~g~~~~~~~SPDG~~la~~~~~ 253 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE------------------KIASSQGMLVVSDVSKDGSKLLLTMAP 253 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE------------------EEecCCCcEEeeEECCCCCEEEEEEcc
Confidence 344 899974 55 33 346888887653211 1111233456678999997665 4444
Q ss_pred C--CeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEe-CCC--cEEEEeCCC
Q 043350 233 D--GKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGG-EGG--VIKIWPWES 292 (1133)
Q Consensus 233 D--g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs-~Dg--tI~iWdl~~ 292 (1133)
+ ..|.++++.+ .....+..+........|+|||+ |+-.+ ..+ .|.+.|+.+
T Consensus 254 ~g~~~Iy~~dl~~---------g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~ 310 (419)
T PRK04043 254 KGQPDIYLYDTNT---------KTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS 310 (419)
T ss_pred CCCcEEEEEECCC---------CcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 4 4566667765 22223333333334558999998 54444 334 466666654
No 346
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.80 E-value=0.0087 Score=72.19 Aligned_cols=195 Identities=14% Similarity=0.157 Sum_probs=109.5
Q ss_pred cccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCc--eeeEeCCCCceEEEEeecceEEEccCceeeeccc
Q 043350 252 FKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIE--KSLSLKPEEKHMAALLVERSFIDLRAQVTVNGAC 328 (1133)
Q Consensus 252 ~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~--~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~ 328 (1133)
|+...++..|+..-+|++|+...+ |+.|+..|.|+++++.++. .....|..... .+.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT--------------------~ve 1150 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVT--------------------LVE 1150 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccc--------------------ccc
Confidence 455667788899999999998888 9999999999999998742 22222322222 111
Q ss_pred cCCCCCeEEEEecCCceEEEecCCCceeEeecC-CCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccc
Q 043350 329 SISSTEIKCMLSDHARARVWCAQPLSFSLWDAR-SKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPH 407 (1133)
Q Consensus 329 ~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~-tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~ 407 (1133)
+..++...++.+. .+.--..+|++. ++...++|... .++.|+..-++ ++ +-+...+-.++
T Consensus 1151 Ps~dgs~~Ltsss--------~S~PlsaLW~~~s~~~~~Hsf~ed----~~vkFsn~~q~------r~-~gt~~d~a~~Y 1211 (1516)
T KOG1832|consen 1151 PSVDGSTQLTSSS--------SSSPLSALWDASSTGGPRHSFDED----KAVKFSNSLQF------RA-LGTEADDALLY 1211 (1516)
T ss_pred ccCCcceeeeecc--------ccCchHHHhccccccCcccccccc----ceeehhhhHHH------HH-hcccccceEEE
Confidence 1133444444444 334467789887 56666666543 35677665433 00 22222233332
Q ss_pred cccc-cccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeCC-CCeeEEEecCCcceeE-
Q 043350 408 GFLQ-RSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGN-GNRVSDILHHQCAVQC- 484 (1133)
Q Consensus 408 ~~~~-~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~-g~~l~~~~~h~~~V~~- 484 (1133)
+... .....+ ++++ .+....-+...|+|+..|+. .|| .+||.. .+.++.|..-+..+..
T Consensus 1212 DvqT~~~l~ty-----------lt~~---~~~~y~~n~a~FsP~D~LIl--ndG--vLWDvR~~~aIh~FD~ft~~~~G~ 1273 (1516)
T KOG1832|consen 1212 DVQTCSPLQTY-----------LTDT---VTSSYSNNLAHFSPCDTLIL--NDG--VLWDVRIPEAIHRFDQFTDYGGGG 1273 (1516)
T ss_pred ecccCcHHHHh-----------cCcc---hhhhhhccccccCCCcceEe--eCc--eeeeeccHHHHhhhhhheeccccc
Confidence 1111 111110 1100 01111124566888883332 455 469983 3556666554433344
Q ss_pred EecCCCEEEEEecCCeEEEEeCCC
Q 043350 485 FCTYGSRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 485 fs~dg~~Lasgs~DG~I~vwd~~g 508 (1133)
|+|.|..++.-+ -|||+..
T Consensus 1274 FHP~g~eVIINS-----EIwD~RT 1292 (1516)
T KOG1832|consen 1274 FHPSGNEVIINS-----EIWDMRT 1292 (1516)
T ss_pred ccCCCceEEeec-----hhhhhHH
Confidence 999999888876 4999875
No 347
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.70 E-value=0.21 Score=63.45 Aligned_cols=106 Identities=14% Similarity=0.102 Sum_probs=70.4
Q ss_pred EEEEEECCCC-eEEEE----ecC-CeEEEEeCCCCee--EEEecCCcceeEEecCCCEEEEEe---cCCeEEEEeCCCCc
Q 043350 442 TEAMVLTADG-MIWSG----CTN-GLLVQWDGNGNRV--SDILHHQCAVQCFCTYGSRMYVGY---VSGYLQILDLDGNL 510 (1133)
Q Consensus 442 V~sl~~spdg-~L~sg----s~D-G~I~vWd~~g~~l--~~~~~h~~~V~~fs~dg~~Lasgs---~DG~I~vwd~~g~~ 510 (1133)
-..+.|.-|| ++++. -.+ ..|++||.+|.+- ..-........+|-|.|..+++-. .|+.|.+|..+|-.
T Consensus 198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~ 277 (1265)
T KOG1920|consen 198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR 277 (1265)
T ss_pred CceEEEccCCcEEEEEEEeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc
Confidence 3458899999 77762 223 7899999986322 222223344556899999888765 56789999988632
Q ss_pred ----ceeeeccccCeEEeeec--ccceee---ecccCCeeeccccC
Q 043350 511 ----TASWIAHSSPVLKLAVG--VDHIYS---LAAHGGIRGWTFTS 547 (1133)
Q Consensus 511 ----l~~~~~H~~~V~~l~fs--~~~L~S---~s~Dg~I~lW~l~s 547 (1133)
...+......|..++|+ +..|+. +.....|++|-+..
T Consensus 278 hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 278 HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 22344445569999999 555555 44445599998754
No 348
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.66 E-value=0.16 Score=61.62 Aligned_cols=145 Identities=13% Similarity=0.135 Sum_probs=90.6
Q ss_pred CCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q 043350 167 TQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQT 244 (1133)
Q Consensus 167 g~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~ 244 (1133)
++.++ ..+|.|++.+.++.......|. +. +.+|.+++|||.||+|.|-.+.+.
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~~~~~~~s-------------------~~------~~~Gey~asCS~DGkv~I~sl~~~ 103 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNPKTNFDHS-------------------SS------ILEGEYVASCSDDGKVVIGSLFTD 103 (846)
T ss_pred cceeeeccccceEEEEecCCccccccccc-------------------cc------ccCCceEEEecCCCcEEEeeccCC
Confidence 45556 6678999988776433322222 11 447999999999999999998762
Q ss_pred CCCCCCCcccccccccCCCCeEEEEEeeC-----Cc-EEEEeCCCcEEEEeCCC--CceeeEeCCCCceEEEEeecceEE
Q 043350 245 LDDANNPFKEGLSWQAHRGPVLAMIFSSQ-----GD-LWSGGEGGVIKIWPWES--IEKSLSLKPEEKHMAALLVERSFI 316 (1133)
Q Consensus 245 ~~~~~~~~~~~~~l~gH~~~V~sl~fsp~-----g~-L~Sgs~DgtI~iWdl~~--~~~~l~~~~~~~~l~s~~~d~s~~ 316 (1133)
+...+ ..-..++.+|+++|+ .+ +++||.-| +.++.-.- ....+.++...
T Consensus 104 --------~~~~~-~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e------------- 160 (846)
T KOG2066|consen 104 --------DEITQ-YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGE------------- 160 (846)
T ss_pred --------cccee-EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCc-------------
Confidence 11222 223578999999998 22 99999998 66654321 11111111111
Q ss_pred EccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCccee
Q 043350 317 DLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIEN 377 (1133)
Q Consensus 317 d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~ 377 (1133)
..+..++-.+....|. .|-.|++||+.+++.+..++.....+.
T Consensus 161 -----------------G~I~~i~W~g~lIAWa-nd~Gv~vyd~~~~~~l~~i~~p~~~~R 203 (846)
T KOG2066|consen 161 -----------------GPIHSIKWRGNLIAWA-NDDGVKVYDTPTRQRLTNIPPPSQSVR 203 (846)
T ss_pred -----------------cceEEEEecCcEEEEe-cCCCcEEEeccccceeeccCCCCCCCC
Confidence 1122233345566665 678899999999998887766554443
No 349
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.62 E-value=1.2 Score=57.05 Aligned_cols=67 Identities=9% Similarity=-0.094 Sum_probs=50.2
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEE
Q 043350 213 SPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIW 288 (1133)
Q Consensus 213 s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iW 288 (1133)
..|.++.|-.+..-+..+..+|.|.+-|... ........-.+.|.+++|+||++ ++-...++++.+-
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et---------~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~m 136 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPET---------LELEIVGNVDNGISAASWSPDEELLALITGRQTLLFM 136 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccc---------cceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEE
Confidence 3577777877888888889999999988775 22222333467899999999999 7777777777654
No 350
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.53 E-value=4.3 Score=43.56 Aligned_cols=62 Identities=11% Similarity=-0.004 Sum_probs=41.7
Q ss_pred CCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEEeCCCCeEE--ecCCcEEEeeCCCC
Q 043350 114 MVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIACTDTQLWA--GQECGVRFWNLEDS 185 (1133)
Q Consensus 114 ~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~s~dg~lla--s~Dg~VrvWdl~~~ 185 (1133)
-|++++.|+..|.+.+-+..+ |.. +..+..-.. -.+++...+++.++- +.|++...-|..+.
T Consensus 62 vgdfVV~GCy~g~lYfl~~~t---Gs~-~w~f~~~~~------vk~~a~~d~~~glIycgshd~~~yalD~~~~ 125 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKT---GSQ-IWNFVILET------VKVRAQCDFDGGLIYCGSHDGNFYALDPKTY 125 (354)
T ss_pred ECCEEEEEEccCcEEEEEecc---hhh-eeeeeehhh------hccceEEcCCCceEEEecCCCcEEEeccccc
Confidence 478899999999999888775 555 444433221 023344455666655 88999999988773
No 351
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=95.37 E-value=0.11 Score=63.65 Aligned_cols=145 Identities=14% Similarity=0.108 Sum_probs=97.4
Q ss_pred CCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEEeCCCCeEE----------ecCCcEEEee
Q 043350 112 QPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIACTDTQLWA----------GQECGVRFWN 181 (1133)
Q Consensus 112 ~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~s~dg~lla----------s~Dg~VrvWd 181 (1133)
.-+++++.+|...|+|-+-|.. ...++.++..|.+ .|.++.-.++.+++ ..|..|+|||
T Consensus 184 R~Nnr~lf~G~t~G~V~LrD~~----s~~~iht~~aHs~-------siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYD 252 (1118)
T KOG1275|consen 184 RYNNRNLFCGDTRGTVFLRDPN----SFETIHTFDAHSG-------SISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYD 252 (1118)
T ss_pred EecCcEEEeecccceEEeecCC----cCceeeeeecccc-------ceeeeeccCCeEEEeecccccccccccchhhhhh
Confidence 4567899999999999999988 4455899999999 78777654555554 3477899999
Q ss_pred CCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCCccccccccc
Q 043350 182 LEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQA 260 (1133)
Q Consensus 182 l~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~g 260 (1133)
++.....- | ...+.+| .-+.|.| -...++.++..|...+-|..+-.. +.........
T Consensus 253 LRmmral~---------------P--I~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN----P~~~~~~v~p 310 (1118)
T KOG1275|consen 253 LRMMRALS---------------P--IQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN----PPAGVKMVNP 310 (1118)
T ss_pred hhhhhccC---------------C--cccccCc-hhhhhcccccceEEEEecccceeeccccccCC----CccceeEEcc
Confidence 98732211 0 0111122 2233444 245678888889998888433111 1111112222
Q ss_pred CCCCeEEEEEeeCCc-EEEEeCCCcEEEEe
Q 043350 261 HRGPVLAMIFSSQGD-LWSGGEGGVIKIWP 289 (1133)
Q Consensus 261 H~~~V~sl~fsp~g~-L~Sgs~DgtI~iWd 289 (1133)
-...+.+++++++|+ |+-|..+|.|.+|.
T Consensus 311 ~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 311 NGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCCcceeEEecCCCceEEEecccCcEeeec
Confidence 245599999999999 99999999999997
No 352
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.32 E-value=0.033 Score=39.85 Aligned_cols=33 Identities=18% Similarity=0.425 Sum_probs=29.6
Q ss_pred eccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEe
Q 043350 208 ESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWK 240 (1133)
Q Consensus 208 ~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd 240 (1133)
...|...|.++.|++.+.++++|+.|+.+++|+
T Consensus 8 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 8 LKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 346778999999999999999999999999996
No 353
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.25 E-value=8.7 Score=45.36 Aligned_cols=85 Identities=20% Similarity=0.214 Sum_probs=49.5
Q ss_pred CCeEEEEeCCCCeeEEEecCCcceeE---Eec----CC---CEEEEEecCCeEEEEeCCCCcceeeeccc-cCeEEeeec
Q 043350 459 NGLLVQWDGNGNRVSDILHHQCAVQC---FCT----YG---SRMYVGYVSGYLQILDLDGNLTASWIAHS-SPVLKLAVG 527 (1133)
Q Consensus 459 DG~I~vWd~~g~~l~~~~~h~~~V~~---fs~----dg---~~Lasgs~DG~I~vwd~~g~~l~~~~~H~-~~V~~l~fs 527 (1133)
..++.+.+.+|......+- ...-.| +.. .+ ..+++++.++++.||.-. ...|.+.- ....++...
T Consensus 261 er~Lf~l~~~G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~---~L~WsA~l~~~PVal~v~ 336 (418)
T PF14727_consen 261 ERSLFCLKDNGSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT---TLVWSAQLPHVPVALSVA 336 (418)
T ss_pred cceEEEEcCCCeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC---eEEEecCCCCCCEEEEec
Confidence 3467777777743333222 233333 222 22 258899999999999732 23455432 222244433
Q ss_pred -----ccceeeecccCCeeeccccC
Q 043350 528 -----VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 528 -----~~~L~S~s~Dg~I~lW~l~s 547 (1133)
...|++.+.+|.+.+==+.+
T Consensus 337 ~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 337 NFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred ccCCCCceEEEEcCCCcEEEEEeCC
Confidence 77899999999988765544
No 354
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.20 E-value=6.1 Score=46.94 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=38.3
Q ss_pred eEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCCCC
Q 043350 235 KIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWESI 293 (1133)
Q Consensus 235 ~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~~~ 293 (1133)
.|+||+..+ +.+..+.--.+.|.++.|+.+.+|+....||+++++|+...
T Consensus 62 ~I~iys~sG---------~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 62 SIQIYSSSG---------KLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEEECCCC---------CEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCc
Confidence 589999887 44444332238999999998666888899999999998653
No 355
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.6 Score=52.64 Aligned_cols=85 Identities=21% Similarity=0.164 Sum_probs=56.7
Q ss_pred cccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeecccc
Q 043350 252 FKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACS 329 (1133)
Q Consensus 252 ~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~ 329 (1133)
++....+.+|...|..|+|+|..+ |..++.+.+|+|.|+++......+... ..+-++ .||++
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC-----~wDld---------- 246 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSC-----CWDLD---------- 246 (463)
T ss_pred cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceee-----eeccC----------
Confidence 455556778899999999999988 888999999999999873222111111 111122 45553
Q ss_pred CCCCCeEEEEecCCceEEEecCCCceeEeecCCCc
Q 043350 330 ISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKE 364 (1133)
Q Consensus 330 ~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~ 364 (1133)
+..++.++ ..+|.|.+||++..+
T Consensus 247 ----e~h~IYaG--------l~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 247 ----ERHVIYAG--------LQNGMVLVYDMRQPE 269 (463)
T ss_pred ----CcceeEEe--------ccCceEEEEEccCCC
Confidence 23344444 578999999999443
No 356
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=94.83 E-value=0.12 Score=54.90 Aligned_cols=39 Identities=15% Similarity=0.424 Sum_probs=31.6
Q ss_pred EEEEEcCeEEEEEecccccChHHHHHHHHHHHHHHHhCc
Q 043350 702 LRIRVYDRTICFVNCHLAAHLEAVNRRNADYDHIYRNMV 740 (1133)
Q Consensus 702 ~r~~~~~~~~~fvn~Hlaa~~~~~~~Rn~d~~~i~~~~~ 740 (1133)
+-..|.+..+||.|+||.+-.+.--+|.+.|...+.+++
T Consensus 197 ~Ev~v~G~Kl~l~tsHLEStr~h~P~r~~qF~~~~~k~~ 235 (349)
T KOG2756|consen 197 VEVNVSGNKLCLMTSHLESTRGHAPERMNQFKMVLKKMQ 235 (349)
T ss_pred EEEeecCceEEEEeccccCCCCCChHHHHHHHHHHHHHH
Confidence 445567788999999999988877889999988777763
No 357
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.78 E-value=17 Score=46.18 Aligned_cols=101 Identities=15% Similarity=0.109 Sum_probs=63.5
Q ss_pred EEEEEECCC-C-eEEEEec----------CCeEEEEeC-CCCeeEEEec--CCcceeEEec-CCCEEEEEecCCeEEEEe
Q 043350 442 TEAMVLTAD-G-MIWSGCT----------NGLLVQWDG-NGNRVSDILH--HQCAVQCFCT-YGSRMYVGYVSGYLQILD 505 (1133)
Q Consensus 442 V~sl~~spd-g-~L~sgs~----------DG~I~vWd~-~g~~l~~~~~--h~~~V~~fs~-dg~~Lasgs~DG~I~vwd 505 (1133)
+.++.|..| + +++.|.. .|.|.++.. +++.++.+.. -.+.+.++.- +|++||. -...|++|+
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~--In~~vrLye 854 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAG--INQSVRLYE 854 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEe--cCcEEEEEE
Confidence 444557666 4 6666642 477777766 3344443332 2455666333 4555543 456899999
Q ss_pred CCCC-cceeeeccccCeEEeeec--ccceeeecccCCeeecc
Q 043350 506 LDGN-LTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWT 544 (1133)
Q Consensus 506 ~~g~-~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~ 544 (1133)
...+ .++.-..|..++..+... ++.++.+.-=+.+.+-.
T Consensus 855 ~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~ 896 (1096)
T KOG1897|consen 855 WTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQ 896 (1096)
T ss_pred ccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEE
Confidence 8754 566566788888887777 88888887766665543
No 358
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=94.77 E-value=0.41 Score=60.22 Aligned_cols=139 Identities=14% Similarity=0.174 Sum_probs=91.8
Q ss_pred CCCceeEeecCCCceeEEEecCCcc-eeEEEeCCCCCc--cccccceEEEEeeCCCCccccccccccceeeccCCceEEE
Q 043350 351 QPLSFSLWDARSKELLKVFNIEGHI-ENRVDTQSVQDQ--PVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRV 427 (1133)
Q Consensus 351 ~d~~I~lWD~~tg~~l~~~~~h~~~-v~~l~~sp~g~~--~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v 427 (1133)
....|.-.|+..|+.+..+..+... |. .+.|+.+. +..+. .+.|-.+..+..++.|... ...|.
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~--~~~p~~K~aqlt~e~----tflGls~n~lfriDpR~~~-----~k~v~-- 568 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVV--DIAPDSKFAQLTNEQ----TFLGLSDNSLFRIDPRLSG-----NKLVD-- 568 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCccee--EecccccccccCCCc----eEEEECCCceEEeccCCCC-----Cceee--
Confidence 4577888999999999999987755 44 44444321 11111 4466666667666666221 00111
Q ss_pred EEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeCCCCeeEE-EecCCcceeE--EecCCCEEEEEecCCeEEEE
Q 043350 428 ATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGNGNRVSD-ILHHQCAVQC--FCTYGSRMYVGYVSGYLQIL 504 (1133)
Q Consensus 428 ~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~g~~l~~-~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vw 504 (1133)
.....+ .......|++.+.+|+||.|+.+|.|++||..|..-++ +.+-..+|.+ ++.||++|++.+ +..+.++
T Consensus 569 --~~~k~Y-~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi 644 (794)
T PF08553_consen 569 --SQSKQY-SSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLI 644 (794)
T ss_pred --cccccc-ccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEE
Confidence 100111 23445788999999999999999999999987744443 3455788988 899999988776 5567777
Q ss_pred eC
Q 043350 505 DL 506 (1133)
Q Consensus 505 d~ 506 (1133)
+.
T Consensus 645 ~t 646 (794)
T PF08553_consen 645 DT 646 (794)
T ss_pred EE
Confidence 74
No 359
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.71 E-value=11 Score=43.81 Aligned_cols=62 Identities=8% Similarity=0.060 Sum_probs=40.7
Q ss_pred eCCCCEEEEEe---------CCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeC
Q 043350 221 DCGNRLVWTGH---------KDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPW 290 (1133)
Q Consensus 221 spd~~~LaSgs---------~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl 290 (1133)
|||++.++... ..+.+.|+|+.. .....+......+....|+|+|+ |+-. .++.|.+++.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~---------~~~~~l~~~~~~~~~~~~sP~g~~~~~v-~~~nly~~~~ 70 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIET---------GEITPLTPPPPKLQDAKWSPDGKYIAFV-RDNNLYLRDL 70 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTT---------TEEEESS-EETTBSEEEE-SSSTEEEEE-ETTEEEEESS
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCC---------CceEECcCCccccccceeecCCCeeEEE-ecCceEEEEC
Confidence 45666666532 246788999987 33333433367889999999999 5555 4678999987
Q ss_pred CC
Q 043350 291 ES 292 (1133)
Q Consensus 291 ~~ 292 (1133)
.+
T Consensus 71 ~~ 72 (353)
T PF00930_consen 71 AT 72 (353)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 360
>PRK02888 nitrous-oxide reductase; Validated
Probab=94.52 E-value=3.1 Score=50.84 Aligned_cols=130 Identities=12% Similarity=0.038 Sum_probs=73.0
Q ss_pred CCceeEeecCC----C-ceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeC-CCCccccccccccce-eeccCCce
Q 043350 352 PLSFSLWDARS----K-ELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSN-KKEKPHGFLQRSRNA-IMGAADAV 424 (1133)
Q Consensus 352 d~~I~lWD~~t----g-~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs-~Dg~i~~~~~~~~~~-~~~~~~~V 424 (1133)
++.|.+.|.++ + +.+..+. -......++++||+++ +++++ .+.++-..+...... +.+.-..-
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGky---------lyVanklS~tVSVIDv~k~k~~~~~~~~~~ 364 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKY---------FIANGKLSPTVTVIDVRKLDDLFDGKIKPR 364 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCE---------EEEeCCCCCcEEEEEChhhhhhhhccCCcc
Confidence 56788999888 3 4444444 4455678999999998 55544 466654222221111 11100000
Q ss_pred EEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCCC-----------CeeEEEecCCcceeE-------E
Q 043350 425 RRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGNG-----------NRVSDILHHQCAVQC-------F 485 (1133)
Q Consensus 425 ~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g-----------~~l~~~~~h~~~V~~-------f 485 (1133)
..+.-.+ .-...-...+|.++| ...|-..|..|..|++.. ..+..+..|-.+-.- -
T Consensus 365 ~~vvaev-----evGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~ 439 (635)
T PRK02888 365 DAVVAEP-----ELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETK 439 (635)
T ss_pred ceEEEee-----ccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcC
Confidence 0111110 001122345678888 677778899999999743 345555554433322 5
Q ss_pred ecCCCEEEEEe
Q 043350 486 CTYGSRMYVGY 496 (1133)
Q Consensus 486 s~dg~~Lasgs 496 (1133)
.+||++|++..
T Consensus 440 ~~dgk~l~~~n 450 (635)
T PRK02888 440 EADGKWLVSLN 450 (635)
T ss_pred CCCCCEEEEcc
Confidence 78999999876
No 361
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.30 E-value=2.7 Score=50.21 Aligned_cols=133 Identities=14% Similarity=0.135 Sum_probs=72.8
Q ss_pred CeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCcEEEEeCCCcEEEE-eCCC
Q 043350 214 PTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGDLWSGGEGGVIKIW-PWES 292 (1133)
Q Consensus 214 ~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iW-dl~~ 292 (1133)
....+.++|+++.++.+ .||.-.|+.... ++. ...+.-...+|.+.++++.-...++|+|+ ++..
T Consensus 34 ~p~~ls~npngr~v~V~-g~geY~iyt~~~--------~r~-----k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVC-GDGEYEIYTALA--------WRN-----KAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp --SEEEE-TTSSEEEEE-ETTEEEEEETTT--------TEE-----EEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE
T ss_pred CCeeEEECCCCCEEEEE-cCCEEEEEEccC--------Ccc-----cccCceeEEEEecCccEEEEECCCeEEEEEcCcc
Confidence 35789999999999884 567888887433 011 12344567889986668877778999996 3321
Q ss_pred C-ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEec
Q 043350 293 I-EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNI 371 (1133)
Q Consensus 293 ~-~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~ 371 (1133)
. .+.+...- ...-+.. |.+.... .++.|.+||..+++.++.+..
T Consensus 100 ~~~k~i~~~~--------------------------------~~~~If~--G~LL~~~-~~~~i~~yDw~~~~~i~~i~v 144 (443)
T PF04053_consen 100 EVVKSIKLPF--------------------------------SVEKIFG--GNLLGVK-SSDFICFYDWETGKLIRRIDV 144 (443)
T ss_dssp -TT-----SS---------------------------------EEEEE---SSSEEEE-ETTEEEEE-TTT--EEEEESS
T ss_pred ccceEEcCCc--------------------------------ccceEEc--CcEEEEE-CCCCEEEEEhhHcceeeEEec
Confidence 1 11111110 0000111 2333333 345799999999999999975
Q ss_pred CCcceeEEEeCCCCCccccccceEEEEeeCCCCcc
Q 043350 372 EGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKP 406 (1133)
Q Consensus 372 h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i 406 (1133)
. .|..+.|++++.+ ++..+.+...
T Consensus 145 ~--~vk~V~Ws~~g~~---------val~t~~~i~ 168 (443)
T PF04053_consen 145 S--AVKYVIWSDDGEL---------VALVTKDSIY 168 (443)
T ss_dssp ---E-EEEEE-TTSSE---------EEEE-S-SEE
T ss_pred C--CCcEEEEECCCCE---------EEEEeCCeEE
Confidence 5 3889999999998 8888776544
No 362
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=94.21 E-value=1.2 Score=41.90 Aligned_cols=89 Identities=17% Similarity=0.250 Sum_probs=60.0
Q ss_pred ECCCC--eEEEEecCCeEEEEeCCCCeeEEEecCCcceeE-EecCCCEEEEEecCCeEEEEeCCCCcceeeecc-ccCeE
Q 043350 447 LTADG--MIWSGCTNGLLVQWDGNGNRVSDILHHQCAVQC-FCTYGSRMYVGYVSGYLQILDLDGNLTASWIAH-SSPVL 522 (1133)
Q Consensus 447 ~spdg--~L~sgs~DG~I~vWd~~g~~l~~~~~h~~~V~~-fs~dg~~Lasgs~DG~I~vwd~~g~~l~~~~~H-~~~V~ 522 (1133)
|..|| .|++|+.|..|++|+-. ..+.++.. ...|++ ..-.+.+++-|..+|+|-+|+.... .|+.- ...++
T Consensus 10 ~d~dg~~eLlvGs~D~~IRvf~~~-e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R---lWRiKSK~~~~ 84 (111)
T PF14783_consen 10 FDGDGENELLVGSDDFEIRVFKGD-EIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQR---LWRIKSKNQVT 84 (111)
T ss_pred cCCCCcceEEEecCCcEEEEEeCC-cEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCcce---eeeeccCCCeE
Confidence 44565 89999999999999875 46666665 455666 3334578999999999999986433 34332 23366
Q ss_pred Eeeec--c----cceeeecccCCe
Q 043350 523 KLAVG--V----DHIYSLAAHGGI 540 (1133)
Q Consensus 523 ~l~fs--~----~~L~S~s~Dg~I 540 (1133)
++.+. . .-|+++=.+|.|
T Consensus 85 ~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 85 SMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred EEEEEcCCCCCceEEEEEecCCeE
Confidence 66554 2 247776666654
No 363
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=94.05 E-value=0.12 Score=60.22 Aligned_cols=75 Identities=16% Similarity=0.089 Sum_probs=48.0
Q ss_pred EEEEEeccccccc--CceeecccccccccccccceeEEEEEEEcCe---EEEEEecccccChHHHHHHHHHHHHHHHhCc
Q 043350 666 ISFWVRKNLRTHV--GDVDAAAVPCGFGRAIGNKGGVGLRIRVYDR---TICFVNCHLAAHLEAVNRRNADYDHIYRNMV 740 (1133)
Q Consensus 666 l~v~~~~~~~~~i--~~v~~~~v~~G~~~~~gnKG~v~~r~~~~~~---~~~fvn~Hlaa~~~~~~~Rn~d~~~i~~~~~ 740 (1133)
++++-+++.-..+ ..|...-.+.|++..-.=++-|..+|++-+. -++..|.||-=|......|-++..-|+..+.
T Consensus 204 ~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~~vrL~Q~~iiL~~~~ 283 (495)
T KOG2338|consen 204 VAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRLVDESSQGILVANTHLLFNPSRSDVRLAQVYIILAELE 283 (495)
T ss_pred EEEEEecccceecccchhhcccccchhhcccceeEEEEEEecccCcccCceEEEeeeeeecCcccchhhHHHHHHHHHHH
Confidence 3445555532222 2233334456665443335667777766655 7999999999888777778888888888763
No 364
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.00 E-value=0.99 Score=52.77 Aligned_cols=144 Identities=15% Similarity=0.174 Sum_probs=92.4
Q ss_pred cCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCcc-ccccceEEEEeeCCCCccccccccccceeeccCCceEEEE
Q 043350 350 AQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQP-VEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVA 428 (1133)
Q Consensus 350 s~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~-~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~ 428 (1133)
.....++--|+..|+.+..+..+.. |+-+.+.|+.... ...+. -+.|-.+..|..|+.|.... . .++
T Consensus 353 ~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~---TlvGLs~n~vfriDpRv~~~----~----kl~ 420 (644)
T KOG2395|consen 353 GEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQ---TLVGLSDNSVFRIDPRVQGK----N----KLA 420 (644)
T ss_pred CCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccc---cEEeecCCceEEecccccCc----c----eee
Confidence 3446777889999999999988776 7777888876531 01111 23455566666666552111 0 112
Q ss_pred EecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeCCCCeeE-EEecCCcceeE--EecCCCEEEEEecCCeEEEEe
Q 043350 429 TRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGNGNRVS-DILHHQCAVQC--FCTYGSRMYVGYVSGYLQILD 505 (1133)
Q Consensus 429 ~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~g~~l~-~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd 505 (1133)
+....++ .......|.+...+|+|+.|+.+|.|++||..+..-+ .+.+-..+|.. .+.+|++|++.+ +.++.+.+
T Consensus 421 ~~q~kqy-~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~ 498 (644)
T KOG2395|consen 421 VVQSKQY-STKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLID 498 (644)
T ss_pred eeecccc-ccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence 2111111 1123356777788889999999999999998664433 35556778887 888999887665 56777777
Q ss_pred CC
Q 043350 506 LD 507 (1133)
Q Consensus 506 ~~ 507 (1133)
+.
T Consensus 499 t~ 500 (644)
T KOG2395|consen 499 TL 500 (644)
T ss_pred Ee
Confidence 53
No 365
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=0.15 Score=60.53 Aligned_cols=72 Identities=14% Similarity=0.121 Sum_probs=63.4
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeE-EEEEeeCCc-EEEEeCCCcEEEEeC
Q 043350 213 SPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVL-AMIFSSQGD-LWSGGEGGVIKIWPW 290 (1133)
Q Consensus 213 s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~-sl~fsp~g~-L~Sgs~DgtI~iWdl 290 (1133)
..+.-+.|+|.-.++|++..+|.|-+.++.- +.+.++.-|..+|+ +++|.|||+ |+.|-.||+|++-|+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~---------qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dv 91 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNW---------QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDV 91 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEecc---------ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEc
Confidence 3578899999999999999999999998875 66777777777777 999999999 999999999999999
Q ss_pred CCC
Q 043350 291 ESI 293 (1133)
Q Consensus 291 ~~~ 293 (1133)
+++
T Consensus 92 e~~ 94 (665)
T KOG4640|consen 92 EKG 94 (665)
T ss_pred cCC
Confidence 874
No 366
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.77 E-value=11 Score=42.93 Aligned_cols=119 Identities=13% Similarity=0.171 Sum_probs=65.1
Q ss_pred CCceeEEEecCCcceeEEEeCCCCCccccccceEEEEe-eCCCCccccccccccceeeccCCceEEEEEecCCcccCCCC
Q 043350 362 SKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVS-SNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTK 440 (1133)
Q Consensus 362 tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~las-gs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~ 440 (1133)
.+..++.+..+-..-+.++|||+++. +.. =+..+.|..+.... ..... ......+.+ ....+
T Consensus 151 ~g~~~~l~~~~~~~~NGla~SpDg~t---------ly~aDT~~~~i~r~~~d~-~~g~~-~~~~~~~~~------~~~~G 213 (307)
T COG3386 151 DGGVVRLLDDDLTIPNGLAFSPDGKT---------LYVADTPANRIHRYDLDP-ATGPI-GGRRGFVDF------DEEPG 213 (307)
T ss_pred CCCEEEeecCcEEecCceEECCCCCE---------EEEEeCCCCeEEEEecCc-ccCcc-CCcceEEEc------cCCCC
Confidence 56666666555556679999999976 433 33345554211110 00000 001111111 12233
Q ss_pred CEEEEEECCCCeEE-EEecCC-eEEEEeCCCCeeEEEecCCcceeE--E-ecCCCEEEEEec
Q 043350 441 RTEAMVLTADGMIW-SGCTNG-LLVQWDGNGNRVSDILHHQCAVQC--F-CTYGSRMYVGYV 497 (1133)
Q Consensus 441 ~V~sl~~spdg~L~-sgs~DG-~I~vWd~~g~~l~~~~~h~~~V~~--f-s~dg~~Lasgs~ 497 (1133)
..-.++...+|.|+ ++..+| .|.+|+.+|+++..+......++| | .++.+.|++.+.
T Consensus 214 ~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 214 LPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 33445667778666 444443 899999999999998887555555 3 345566655553
No 367
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=0.23 Score=58.92 Aligned_cols=87 Identities=16% Similarity=0.145 Sum_probs=67.3
Q ss_pred CEEEEEECCCC-eEEEEecCCeEEEEeCCCCeeEEEecCCccee-E--EecCCCEEEEEecCCeEEEEeCCC-Cccee-e
Q 043350 441 RTEAMVLTADG-MIWSGCTNGLLVQWDGNGNRVSDILHHQCAVQ-C--FCTYGSRMYVGYVSGYLQILDLDG-NLTAS-W 514 (1133)
Q Consensus 441 ~V~sl~~spdg-~L~sgs~DG~I~vWd~~g~~l~~~~~h~~~V~-~--fs~dg~~Lasgs~DG~I~vwd~~g-~~l~~-~ 514 (1133)
.+..+.++|.- .+|.+..+|.|.+...+-+++.++..|...++ + |.|||+.||+|-.||+|++-|++. ..+.. .
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~ 101 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFL 101 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccc
Confidence 35566677777 89999999999999999999999997777777 4 999999999999999999999974 33332 1
Q ss_pred eccccCeEEeeec
Q 043350 515 IAHSSPVLKLAVG 527 (1133)
Q Consensus 515 ~~H~~~V~~l~fs 527 (1133)
..-...|..+-|+
T Consensus 102 ~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 102 FSVETDISKGIWD 114 (665)
T ss_pred cccccchheeecc
Confidence 2233455555554
No 368
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.30 E-value=0.14 Score=63.96 Aligned_cols=95 Identities=20% Similarity=0.255 Sum_probs=71.9
Q ss_pred eEEEEecCCeEEEEeCCCCee--EEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCC-CcceeeeccccCeEEeee
Q 043350 452 MIWSGCTNGLLVQWDGNGNRV--SDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG-NLTASWIAHSSPVLKLAV 526 (1133)
Q Consensus 452 ~L~sgs~DG~I~vWd~~g~~l--~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g-~~l~~~~~H~~~V~~l~f 526 (1133)
.++.|++.|.+-..|..|+.- ..=...+++|+| |+.+|+.++.|-.+|.|.+||+.. ++++.+.-|..+++++-+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~ 180 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF 180 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence 688888889999988877532 222234678888 999999999999999999999985 777777777777766655
Q ss_pred c-----ccceeeecccCCeeeccccCC
Q 043350 527 G-----VDHIYSLAAHGGIRGWTFTSP 548 (1133)
Q Consensus 527 s-----~~~L~S~s~Dg~I~lW~l~s~ 548 (1133)
. +..++++..-|. +|++.-.
T Consensus 181 v~~t~~nS~llt~D~~Gs--f~~lv~n 205 (1206)
T KOG2079|consen 181 VGRTSQNSKLLTSDTGGS--FWKLVFN 205 (1206)
T ss_pred EEEeCCCcEEEEccCCCc--eEEEEec
Confidence 5 555777776665 7877543
No 369
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.27 E-value=14 Score=41.34 Aligned_cols=172 Identities=14% Similarity=0.060 Sum_probs=92.3
Q ss_pred cCCCceeEeecC-CCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCC-------Cccc-ccc--ccccceee
Q 043350 350 AQPLSFSLWDAR-SKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKK-------EKPH-GFL--QRSRNAIM 418 (1133)
Q Consensus 350 s~d~~I~lWD~~-tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~D-------g~i~-~~~--~~~~~~~~ 418 (1133)
...|.|-|||.. +-+.+..|..++-.-..+.+.|+++. |+.+..- |..+ +.+ ..++..+.
T Consensus 74 ~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~t---------LvVANGGI~Thpd~GR~kLNl~tM~psL~~ld 144 (305)
T PF07433_consen 74 TGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGET---------LVVANGGIETHPDSGRAKLNLDTMQPSLVYLD 144 (305)
T ss_pred CCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCE---------EEEEcCCCccCcccCceecChhhcCCceEEEe
Confidence 556889999999 56677788877766678889999976 5554321 1111 111 11111111
Q ss_pred ccCCceEE-EEEecCCcccCCCCCEEEEEECCCCeEEEEecC-C-------eEEEEeCCCCeeEEEec-------CCcce
Q 043350 419 GAADAVRR-VATRGAGAFVDDTKRTEAMVLTADGMIWSGCTN-G-------LLVQWDGNGNRVSDILH-------HQCAV 482 (1133)
Q Consensus 419 ~~~~~V~~-v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~D-G-------~I~vWd~~g~~l~~~~~-------h~~~V 482 (1133)
...+.+.. ..+. -..|...|.-+++.++|.++.|... | .|-+++..+ .+..+.. -..-|
T Consensus 145 ~~sG~ll~q~~Lp----~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~-~~~~~~~p~~~~~~l~~Y~ 219 (305)
T PF07433_consen 145 ARSGALLEQVELP----PDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG-ALRLLPAPEEQWRRLNGYI 219 (305)
T ss_pred cCCCceeeeeecC----ccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC-cceeccCChHHHHhhCCce
Confidence 22222211 1111 0345667888888888855555432 1 133333322 1222211 11223
Q ss_pred e--EEecCCCEEEEEe-cCCeEEEEeCC-CCcceeeeccccCeEEeeec-ccceeeeccc
Q 043350 483 Q--CFCTYGSRMYVGY-VSGYLQILDLD-GNLTASWIAHSSPVLKLAVG-VDHIYSLAAH 537 (1133)
Q Consensus 483 ~--~fs~dg~~Lasgs-~DG~I~vwd~~-g~~l~~~~~H~~~V~~l~fs-~~~L~S~s~D 537 (1133)
- +++.+|.++++.| .-|.+.+||.. +.++....- ..+..|+.. +.+++|.+.-
T Consensus 220 gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~f~~ssG~G 277 (305)
T PF07433_consen 220 GSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDGFLVSSGQG 277 (305)
T ss_pred EEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCceEEeCCCc
Confidence 2 3788888887766 67899999886 444432221 234556555 5566665543
No 370
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.92 E-value=28 Score=42.40 Aligned_cols=94 Identities=23% Similarity=0.307 Sum_probs=57.2
Q ss_pred eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeEEecCCCEEEEE------------------ecCCeEEEEeCC-CCcc
Q 043350 452 MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQCFCTYGSRMYVG------------------YVSGYLQILDLD-GNLT 511 (1133)
Q Consensus 452 ~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~fs~dg~~Lasg------------------s~DG~I~vwd~~-g~~l 511 (1133)
.++.++.+|.+...|. +|+.+.+....... ...++ ..++.+ ..+|.|.-.|+. |+.+
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~-~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~ 379 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVEQP-MAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVV 379 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeeccc-cccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEe
Confidence 5788889999999999 88888766432111 11222 333332 235677777765 4432
Q ss_pred eeeeccc----------cCe--EEeeecccceeeecccCCeeeccccCCCC
Q 043350 512 ASWIAHS----------SPV--LKLAVGVDHIYSLAAHGGIRGWTFTSPSP 550 (1133)
Q Consensus 512 ~~~~~H~----------~~V--~~l~fs~~~L~S~s~Dg~I~lW~l~s~~~ 550 (1133)
|+... .+. ..++..+..|+.++.||.|..+|..+...
T Consensus 380 --W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~ 428 (488)
T cd00216 380 --WEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKE 428 (488)
T ss_pred --eEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCce
Confidence 22111 111 23455688899999999999998776543
No 371
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=92.81 E-value=19 Score=40.01 Aligned_cols=59 Identities=12% Similarity=0.196 Sum_probs=40.5
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCC
Q 043350 223 GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWES 292 (1133)
Q Consensus 223 d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~ 292 (1133)
.++.|+.|..+| +.+++.... . .... ..+...|..|...++-+ |+.- .|+.+.++++..
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~-----~--~~~~--i~~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~ 65 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDP-----S--KPTR--ILKLSSITQLSVLPELNLLLVL-SDGQLYVYDLDS 65 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCC-----c--ccee--EeecceEEEEEEecccCEEEEE-cCCccEEEEchh
Confidence 678899999998 888988320 0 1111 11223499999998877 4444 359999999986
No 372
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=92.64 E-value=1.8 Score=40.69 Aligned_cols=88 Identities=16% Similarity=0.217 Sum_probs=57.1
Q ss_pred CCeEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC
Q 043350 167 TQLWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTL 245 (1133)
Q Consensus 167 g~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~ 245 (1133)
..+++ +.|..||+|+-+...... .-.+.|.+|+-... ..++.|..+|+|-+|+-..
T Consensus 16 ~eLlvGs~D~~IRvf~~~e~~~Ei--------------------~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~-- 72 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDEIVAEI--------------------TETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ-- 72 (111)
T ss_pred ceEEEecCCcEEEEEeCCcEEEEE--------------------ecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--
Confidence 46777 999999999866532211 22346777777655 6689999999999998654
Q ss_pred CCCCCCcccccccccCCCCeEEEEEee---CCc--EEEEeCCCcEE
Q 043350 246 DDANNPFKEGLSWQAHRGPVLAMIFSS---QGD--LWSGGEGGVIK 286 (1133)
Q Consensus 246 ~~~~~~~~~~~~l~gH~~~V~sl~fsp---~g~--L~Sgs~DgtI~ 286 (1133)
+ +...+. ...++++++.. +|. |++|-.+|.|-
T Consensus 73 -------R-lWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 -------R-LWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -------e-eeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 1 112221 22366665543 344 99998888774
No 373
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.57 E-value=15 Score=41.68 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=62.5
Q ss_pred CCCEEEEEECCCC-eEEEEec-CCeEEEEeCC---CC---e--eEEEecCCccee--EEecCCCEEEEEecCC-eEEEEe
Q 043350 439 TKRTEAMVLTADG-MIWSGCT-NGLLVQWDGN---GN---R--VSDILHHQCAVQ--CFCTYGSRMYVGYVSG-YLQILD 505 (1133)
Q Consensus 439 ~~~V~sl~~spdg-~L~sgs~-DG~I~vWd~~---g~---~--l~~~~~h~~~V~--~fs~dg~~Lasgs~DG-~I~vwd 505 (1133)
-..-+.|+||||+ .++.+-. .+.|..|++. +. . ...+....+..- |+..+|.+-+++..+| .|.+|+
T Consensus 162 ~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~ 241 (307)
T COG3386 162 LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFN 241 (307)
T ss_pred EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEEC
Confidence 4445789999999 6665544 5788888764 21 1 111111112111 2555566544555554 999999
Q ss_pred CCCCcceeeeccccCeEEeeecc---cceeeeccc
Q 043350 506 LDGNLTASWIAHSSPVLKLAVGV---DHIYSLAAH 537 (1133)
Q Consensus 506 ~~g~~l~~~~~H~~~V~~l~fs~---~~L~S~s~D 537 (1133)
.+|+++....-....+++++|.+ +.|+..+..
T Consensus 242 pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 242 PDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred CCCcEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence 99999988888878899999984 555554433
No 374
>PRK02888 nitrous-oxide reductase; Validated
Probab=92.56 E-value=10 Score=46.49 Aligned_cols=70 Identities=13% Similarity=0.146 Sum_probs=53.4
Q ss_pred CCCEEEEEECCCC--eEEEEecCCeEEEEeCCC-C------------eeEEEecCCcceeE-EecCCCEEEEEecCCeEE
Q 043350 439 TKRTEAMVLTADG--MIWSGCTNGLLVQWDGNG-N------------RVSDILHHQCAVQC-FCTYGSRMYVGYVSGYLQ 502 (1133)
Q Consensus 439 ~~~V~sl~~spdg--~L~sgs~DG~I~vWd~~g-~------------~l~~~~~h~~~V~~-fs~dg~~Lasgs~DG~I~ 502 (1133)
....+.+.++||| .++++..+.+|.|.|... + .+.+.....+++.. |.++|....+-..|..|.
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~ 399 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIV 399 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeE
Confidence 3456788999999 455666799999999844 2 24555556667666 999998888888999999
Q ss_pred EEeCCC
Q 043350 503 ILDLDG 508 (1133)
Q Consensus 503 vwd~~g 508 (1133)
.||+..
T Consensus 400 kwn~~~ 405 (635)
T PRK02888 400 KWNIEA 405 (635)
T ss_pred EEehHH
Confidence 999864
No 375
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=92.52 E-value=1.3 Score=48.76 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=25.4
Q ss_pred ccceeEEEEEEEcCeEEEEEecccccChHHHHHHHHHHHHHHHh
Q 043350 695 GNKGGVGLRIRVYDRTICFVNCHLAAHLEAVNRRNADYDHIYRN 738 (1133)
Q Consensus 695 gnKG~v~~r~~~~~~~~~fvn~Hlaa~~~~~~~Rn~d~~~i~~~ 738 (1133)
.....+++++. .+.|.|.||.|.-+ ..|.+-...|...
T Consensus 140 ~~Rpilgi~i~----~~~ffstH~~a~~~--~da~aiV~~I~~~ 177 (271)
T PRK15251 140 ASRPIIGIRIG----NDVFFSIHALANGG--TDAGAIVRAVHNF 177 (271)
T ss_pred cccceEEEEec----CeEEEEeeecCCCC--ccHHHHHHHHHHH
Confidence 36678888763 37999999998832 2255556666554
No 376
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.49 E-value=0.17 Score=61.64 Aligned_cols=164 Identities=15% Similarity=0.190 Sum_probs=99.7
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCC-cEE
Q 043350 210 ANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGG-VIK 286 (1133)
Q Consensus 210 ~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~Dg-tI~ 286 (1133)
-|....+|++|+-+.+.|+.|+-.|.|+++++..+ .......+|..+|+-|.=+.+|. |.+++... ..-
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG--------~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG--------SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCc--------cccccccccccccccccccCCcceeeeeccccCchHH
Confidence 36678999999999999999999999999999863 23446788999999999888998 44444444 577
Q ss_pred EEeCCC-C--------ceeeEeCCCC--ceEEEEeecceEEEccCceeeecc----ccCCCCCeEEEEecCCceEEEecC
Q 043350 287 IWPWES-I--------EKSLSLKPEE--KHMAALLVERSFIDLRAQVTVNGA----CSISSTEIKCMLSDHARARVWCAQ 351 (1133)
Q Consensus 287 iWdl~~-~--------~~~l~~~~~~--~~l~s~~~d~s~~d~~~~~~v~~~----~~~~~~~~~~l~S~d~~i~vwss~ 351 (1133)
+|++.. . .+.+.|.... +.+-+...+..++|..+...+..+ ....-.......+.+....+|.+
T Consensus 1171 LW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndG- 1249 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDG- 1249 (1516)
T ss_pred HhccccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCc-
Confidence 899875 1 1222222211 111111111125666544322221 11111223334444455555552
Q ss_pred CCceeEeecCCCceeEEEecCCcceeEEEeCCCCCc
Q 043350 352 PLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQ 387 (1133)
Q Consensus 352 d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~ 387 (1133)
.+||.+..+.++.|..-...+ .-.|+|.|..
T Consensus 1250 ----vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~e 1280 (1516)
T KOG1832|consen 1250 ----VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNE 1280 (1516)
T ss_pred ----eeeeeccHHHHhhhhhheecc-cccccCCCce
Confidence 589999888887775443222 3358888876
No 377
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=92.32 E-value=11 Score=43.83 Aligned_cols=114 Identities=12% Similarity=0.104 Sum_probs=59.0
Q ss_pred CCCCCEEEEec---------CCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE-ecCCcEEEe
Q 043350 112 QPMVEFIGSGG---------GTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA-GQECGVRFW 180 (1133)
Q Consensus 112 ~p~g~~lasgs---------~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla-s~Dg~VrvW 180 (1133)
|||+++++... ..+.+.|+|+.+ .. ...+..... .+.... ||+|+.+| ..++.|.++
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~----~~-~~~l~~~~~-------~~~~~~~sP~g~~~~~v~~~nly~~ 68 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIET----GE-ITPLTPPPP-------KLQDAKWSPDGKYIAFVRDNNLYLR 68 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTT----TE-EEESS-EET-------TBSEEEE-SSSTEEEEEETTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCC----Cc-eEECcCCcc-------ccccceeecCCCeeEEEecCceEEE
Confidence 57888887642 345677777763 22 222222211 345555 99999999 889999999
Q ss_pred eCCCCCCc-C--cCCCccccCCCCCCCceeeccC-CCCeEEEEEeCCCCEEEEEeCC-CeEEEEeC
Q 043350 181 NLEDSYEP-G--AGIGGRVRRGDEDAAPFYESAN-TSPTMCLMVDCGNRLVWTGHKD-GKIRSWKM 241 (1133)
Q Consensus 181 dl~~~~~~-~--~gh~~~v~~g~~~~~~~~~~~h-~s~V~~la~spd~~~LaSgs~D-g~V~vWd~ 241 (1133)
+..+.... + .| ...+..|.. .++..-. ++.-..+-||||++.||....| ..|+.+.+
T Consensus 69 ~~~~~~~~~lT~dg-~~~i~nG~~---dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 69 DLATGQETQLTTDG-EPGIYNGVP---DWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp SSTTSEEEESES---TTTEEESB-----HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred ECCCCCeEEecccc-ceeEEcCcc---ceeccccccccccceEECCCCCEEEEEEECCcCCceEEe
Confidence 87652111 1 11 100011110 1111111 2334568999999999877654 44554443
No 378
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=92.04 E-value=24 Score=41.97 Aligned_cols=30 Identities=13% Similarity=0.145 Sum_probs=24.6
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q 043350 213 SPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQ 243 (1133)
Q Consensus 213 s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~ 243 (1133)
+.+.++.|+.+..+ +.-..||+++++|+.+
T Consensus 81 ~~iv~~~wt~~e~L-vvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 81 GRIVGMGWTDDEEL-VVVQSDGTVRVYDLFG 110 (410)
T ss_pred CCEEEEEECCCCeE-EEEEcCCEEEEEeCCC
Confidence 68999999986554 5567899999999975
No 379
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=91.93 E-value=18 Score=41.07 Aligned_cols=257 Identities=14% Similarity=0.144 Sum_probs=124.8
Q ss_pred CeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEe----------CCCcEEEEeCCCC--ceeeEeC
Q 043350 234 GKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGG----------EGGVIKIWPWESI--EKSLSLK 300 (1133)
Q Consensus 234 g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs----------~DgtI~iWdl~~~--~~~l~~~ 300 (1133)
+.+.|.|.+.+ +.+-.+. .+-.-.+..+|+|+ +++++ ..-.|.+||..+. ...+.+.
T Consensus 17 ~rv~viD~d~~--------k~lGmi~--~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP 86 (342)
T PF06433_consen 17 SRVYVIDADSG--------KLLGMID--TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIP 86 (342)
T ss_dssp EEEEEEETTTT--------EEEEEEE--EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEET
T ss_pred ceEEEEECCCC--------cEEEEee--cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecC
Confidence 46788887651 1111111 22233467789988 66543 3446889999874 2223333
Q ss_pred CCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEec-CCCceeEeecCCCceeEEEecCCcceeEE
Q 043350 301 PEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCA-QPLSFSLWDARSKELLKVFNIEGHIENRV 379 (1133)
Q Consensus 301 ~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss-~d~~I~lWD~~tg~~l~~~~~h~~~v~~l 379 (1133)
+..+. .++ +......+..++..+.|++. -..+|.|-|+..++.+..+...+- .
T Consensus 87 ~k~R~-~~~---------------------~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC----~ 140 (342)
T PF06433_consen 87 PKPRA-QVV---------------------PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC----W 140 (342)
T ss_dssp TS-B---BS-----------------------GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE----E
T ss_pred Ccchh-eec---------------------ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE----E
Confidence 32221 010 11222222223333444543 346788999999988888765442 2
Q ss_pred EeCCCC-CccccccceEEEEeeCCCCccc--ccc--ccccceeeccCCceEEEEEecCCcccCCCCC-EEEEEECCCC-e
Q 043350 380 DTQSVQ-DQPVEDEMKVKFVSSNKKEKPH--GFL--QRSRNAIMGAADAVRRVATRGAGAFVDDTKR-TEAMVLTADG-M 452 (1133)
Q Consensus 380 ~~sp~g-~~~~e~e~~v~lasgs~Dg~i~--~~~--~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~-V~sl~~spdg-~ 452 (1133)
-.-|.+ +- |.+-+.||++. .++ ++.. ....-.|. ....+ +..-+++..+ .
T Consensus 141 ~iyP~~~~~---------F~~lC~DGsl~~v~Ld~~Gk~~--------~~~t~~F~------~~~dp~f~~~~~~~~~~~ 197 (342)
T PF06433_consen 141 LIYPSGNRG---------FSMLCGDGSLLTVTLDADGKEA--------QKSTKVFD------PDDDPLFEHPAYSRDGGR 197 (342)
T ss_dssp EEEEEETTE---------EEEEETTSCEEEEEETSTSSEE--------EEEEEESS------TTTS-B-S--EEETTTTE
T ss_pred EEEecCCCc---------eEEEecCCceEEEEECCCCCEe--------EeeccccC------CCCcccccccceECCCCe
Confidence 222322 23 66778888875 222 1110 00011122 11221 1122233333 5
Q ss_pred EEEEecCCeEEEEeCCCCee---EEEec------------CCcceeEEecCCCEEEEEec--------CC--eEEEEeCC
Q 043350 453 IWSGCTNGLLVQWDGNGNRV---SDILH------------HQCAVQCFCTYGSRMYVGYV--------SG--YLQILDLD 507 (1133)
Q Consensus 453 L~sgs~DG~I~vWd~~g~~l---~~~~~------------h~~~V~~fs~dg~~Lasgs~--------DG--~I~vwd~~ 507 (1133)
++--+-+|.|+--|+.+... ..+.. ....+.++++..++|++--. |+ .|.+||+.
T Consensus 198 ~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~ 277 (342)
T PF06433_consen 198 LYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK 277 (342)
T ss_dssp EEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETT
T ss_pred EEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECC
Confidence 55567778777777755322 22211 12233345655555554331 22 46666766
Q ss_pred C-CcceeeeccccCeEEeeec---ccceeee-cccCCeeeccccCCCC
Q 043350 508 G-NLTASWIAHSSPVLKLAVG---VDHIYSL-AAHGGIRGWTFTSPSP 550 (1133)
Q Consensus 508 g-~~l~~~~~H~~~V~~l~fs---~~~L~S~-s~Dg~I~lW~l~s~~~ 550 (1133)
. +.+..+.- ..++.+|.++ ...|++. ..++.|.+||..+...
T Consensus 278 t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 278 THKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp TTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred CCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 3 45555543 2346678777 4567665 4578999999887543
No 380
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=91.66 E-value=20 Score=42.25 Aligned_cols=80 Identities=18% Similarity=0.170 Sum_probs=53.4
Q ss_pred CeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCC------C-----------------------------CCccccccc
Q 043350 214 PTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDA------N-----------------------------NPFKEGLSW 258 (1133)
Q Consensus 214 ~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~------~-----------------------------~~~~~~~~l 258 (1133)
.|.++.|+++..-|+.|...|.|-||......... . ..+.+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 48899999999999999999999999864211100 0 011122233
Q ss_pred ccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCCCC
Q 043350 259 QAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWESI 293 (1133)
Q Consensus 259 ~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~~~ 293 (1133)
....++|++++.|.-|-++.|.++|.+.|.|++..
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGP 117 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGP 117 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTT
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCC
Confidence 44589999999986666889999999999999874
No 381
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=91.65 E-value=0.11 Score=61.34 Aligned_cols=149 Identities=15% Similarity=0.195 Sum_probs=93.4
Q ss_pred CCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE--eCCCCeEE-e-----cCCcEEEeeCC
Q 043350 112 QPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA--CTDTQLWA-G-----QECGVRFWNLE 183 (1133)
Q Consensus 112 ~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~--s~dg~lla-s-----~Dg~VrvWdl~ 183 (1133)
+-+-..++.|..+|.|-+-.....|... -....+|.. ..++++ .-|..+|| | .|..+.|||+.
T Consensus 67 ~~d~cIlavG~atG~I~l~s~r~~hdSs--~E~tp~~ar-------~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 67 GNDRCILAVGSATGNISLLSVRHPHDSS--AEVTPGYAR-------PCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CCchhhhhhccccCceEEeecCCccccc--ceecccccc-------cccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 4556788999999998887654222220 112233444 677777 34667777 3 46789999998
Q ss_pred CCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCC
Q 043350 184 DSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRG 263 (1133)
Q Consensus 184 ~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~ 263 (1133)
..+..- .++ +.....-...+.+++|..+.++|.+|.....++++|++. .....-.-.+.
T Consensus 138 s~ltvP--------ke~----~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq---------s~~~~~svnTk 196 (783)
T KOG1008|consen 138 SLLTVP--------KES----PLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ---------SLDSVSSVNTK 196 (783)
T ss_pred cccCCC--------ccc----cccccccccCccccccccCcchhhcccccchhhhhhhhh---------hhhhhhhhhhh
Confidence 753310 000 001111233455788888999999999999999999985 11212222345
Q ss_pred CeEEEEEeeC-CcEEEEeCCCcEEEEeC
Q 043350 264 PVLAMIFSSQ-GDLWSGGEGGVIKIWPW 290 (1133)
Q Consensus 264 ~V~sl~fsp~-g~L~Sgs~DgtI~iWdl 290 (1133)
.|..+...|. +.-+....||.|-+||.
T Consensus 197 ~vqG~tVdp~~~nY~cs~~dg~iAiwD~ 224 (783)
T KOG1008|consen 197 YVQGITVDPFSPNYFCSNSDGDIAIWDT 224 (783)
T ss_pred hcccceecCCCCCceeccccCceeeccc
Confidence 6777888884 44444455999999993
No 382
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=91.42 E-value=0.48 Score=37.36 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=29.3
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q 043350 212 TSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQ 243 (1133)
Q Consensus 212 ~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~ 243 (1133)
..+|.+++|+|...+||.|..||.|.+++++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 34699999999999999999999999999965
No 383
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=91.39 E-value=42 Score=40.95 Aligned_cols=27 Identities=15% Similarity=0.518 Sum_probs=21.0
Q ss_pred CeEEEEecCCeEEEEeC-CCCeeEEEec
Q 043350 451 GMIWSGCTNGLLVQWDG-NGNRVSDILH 477 (1133)
Q Consensus 451 g~L~sgs~DG~I~vWd~-~g~~l~~~~~ 477 (1133)
+.|+.++.||.|..+|. +|+.+.+++.
T Consensus 407 ~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 407 NLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred CeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 37777888888888888 7787777665
No 384
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=90.84 E-value=0.19 Score=59.60 Aligned_cols=267 Identities=16% Similarity=0.220 Sum_probs=148.4
Q ss_pred CCCeEEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEe----CCC
Q 043350 212 TSPTMCLMVDCG--NRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGG----EGG 283 (1133)
Q Consensus 212 ~s~V~~la~spd--~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs----~Dg 283 (1133)
+.-+.|+++.-+ ..+++.|..+|.|.+-.++.... .--....+|..+.++++|++-.. |+.|= .|.
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd------Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds 129 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD------SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDS 129 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCccc------ccceecccccccccccccccccHHHHHhhhhhhcccC
Confidence 335778877663 45789999999999998875221 11224567888999999999755 55542 466
Q ss_pred cEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCC
Q 043350 284 VIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSK 363 (1133)
Q Consensus 284 tI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg 363 (1133)
.++|||+.+... .|.+....+++ .....+.+|+. .+..++.++ .....++++|++..
T Consensus 130 ~~~Iwdi~s~lt----vPke~~~fs~~---------~l~gqns~cwl--rd~klvlaG--------m~sr~~~ifdlRqs 186 (783)
T KOG1008|consen 130 SLKIWDINSLLT----VPKESPLFSSS---------TLDGQNSVCWL--RDTKLVLAG--------MTSRSVHIFDLRQS 186 (783)
T ss_pred CccceecccccC----CCccccccccc---------cccCccccccc--cCcchhhcc--------cccchhhhhhhhhh
Confidence 799999987432 22222211110 01122234443 566667777 77788999998832
Q ss_pred -ceeEEEecCCcceeEEEeCC-CCCccccccceEEEEeeCCCCccccccc-cc----cceeeccCCceEEEEEecCCccc
Q 043350 364 -ELLKVFNIEGHIENRVDTQS-VQDQPVEDEMKVKFVSSNKKEKPHGFLQ-RS----RNAIMGAADAVRRVATRGAGAFV 436 (1133)
Q Consensus 364 -~~l~~~~~h~~~v~~l~~sp-~g~~~~e~e~~v~lasgs~Dg~i~~~~~-~~----~~~~~~~~~~V~~v~~~p~g~~~ 436 (1133)
..... ...+.+..+.+.| .+.+ +++ ..|+.|..|+. +. ...+.....
T Consensus 187 ~~~~~s--vnTk~vqG~tVdp~~~nY---------~cs-~~dg~iAiwD~~rnienpl~~i~~~~N-------------- 240 (783)
T KOG1008|consen 187 LDSVSS--VNTKYVQGITVDPFSPNY---------FCS-NSDGDIAIWDTYRNIENPLQIILRNEN-------------- 240 (783)
T ss_pred hhhhhh--hhhhhcccceecCCCCCc---------eec-cccCceeeccchhhhccHHHHHhhCCC--------------
Confidence 21112 2233455677778 5555 544 44777766662 21 111111111
Q ss_pred CCCCCEEEEEECCC--CeEEEEec-CCeEEEEeCC--CC------e--e--EE---EecC--CcceeEEecCC----CEE
Q 043350 437 DDTKRTEAMVLTAD--GMIWSGCT-NGLLVQWDGN--GN------R--V--SD---ILHH--QCAVQCFCTYG----SRM 492 (1133)
Q Consensus 437 ~h~~~V~sl~~spd--g~L~sgs~-DG~I~vWd~~--g~------~--l--~~---~~~h--~~~V~~fs~dg----~~L 492 (1133)
....++..+++.|- |.+++... .++|+++++. +. . + .. ++.. -..|.+|++.. +..
T Consensus 241 ~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~ 320 (783)
T KOG1008|consen 241 KKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQ 320 (783)
T ss_pred CcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeeecccccccccccccceeecCcCcCCcccee
Confidence 11123555666654 35666554 4789999872 11 0 1 01 1111 24566644432 244
Q ss_pred EEEecCCeEEEEeCCCCcceeeeccccCeEEeeec-ccceeeecc
Q 043350 493 YVGYVSGYLQILDLDGNLTASWIAHSSPVLKLAVG-VDHIYSLAA 536 (1133)
Q Consensus 493 asgs~DG~I~vwd~~g~~l~~~~~H~~~V~~l~fs-~~~L~S~s~ 536 (1133)
.++-..-++.-+++... .+.+|..+.+.+.|+ .+.+...+.
T Consensus 321 il~~~nl~~~Df~V~e~---~~pa~s~p~n~L~~s~~r~ly~~~S 362 (783)
T KOG1008|consen 321 ILGVINLQPKDFSVHEE---VIPASSNPYNDLIFSFKRKLYPLNS 362 (783)
T ss_pred EEeeccCChhhccchhh---eecccCCCcccchhhhcccccCCCC
Confidence 55555556666665432 334666788999988 666665543
No 385
>PRK13616 lipoprotein LpqB; Provisional
Probab=90.82 E-value=10 Score=47.24 Aligned_cols=60 Identities=15% Similarity=0.121 Sum_probs=35.4
Q ss_pred CeEEEEEeCCCCEEEEEe------CCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCC
Q 043350 214 PTMCLMVDCGNRLVWTGH------KDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEG 282 (1133)
Q Consensus 214 ~V~~la~spd~~~LaSgs------~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~D 282 (1133)
.+...+++|+|+.+|..- .|..-.||-...+.. . .. ...+. ..+.-.|+|+|. |++.+..
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~---~--~~--lt~g~--~~t~PsWspDG~~lw~v~dg 417 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV---A--VQ--VLEGH--SLTRPSWSLDADAVWVVVDG 417 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc---c--ee--eecCC--CCCCceECCCCCceEEEecC
Confidence 467788999999876655 244444554332111 0 11 12232 367779999988 8887643
No 386
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=90.58 E-value=20 Score=40.85 Aligned_cols=237 Identities=15% Similarity=0.163 Sum_probs=105.4
Q ss_pred cccCCCCCEEEEec----------CCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE----ec
Q 043350 109 KPFQPMVEFIGSGG----------GTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA----GQ 173 (1133)
Q Consensus 109 ~~~~p~g~~lasgs----------~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla----s~ 173 (1133)
+-.+|+++.+++++ ..-.|.+||..+..+ ..++.-.+..-.+++.....++ +.|++++. +.
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~----~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TP 116 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP----TGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTP 116 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE----EEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESS
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc----cceEecCCcchheecccccceEEccCCcEEEEEccCC
Confidence 33589999888653 344688999885322 2222111110001111222223 55555554 44
Q ss_pred CCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcc
Q 043350 174 ECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFK 253 (1133)
Q Consensus 174 Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~ 253 (1133)
-..|-|-|+... .++....... |.+.+-..++-+.+-+.||.+....++...+.. .+
T Consensus 117 a~SVtVVDl~~~-------------------kvv~ei~~PG-C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~---~~ 173 (342)
T PF06433_consen 117 ATSVTVVDLAAK-------------------KVVGEIDTPG-CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA---QK 173 (342)
T ss_dssp SEEEEEEETTTT-------------------EEEEEEEGTS-EEEEEEEETTEEEEEETTSCEEEEEETSTSSEE---EE
T ss_pred CCeEEEEECCCC-------------------ceeeeecCCC-EEEEEecCCCceEEEecCCceEEEEECCCCCEe---Ee
Confidence 556666665542 1122122212 222221133557788888888888877422200 00
Q ss_pred cccccccCCCCeE-EEEEeeCCc-EEEEeCCCcEEEEeCCCC------------------------ceeeEeCCCCceEE
Q 043350 254 EGLSWQAHRGPVL-AMIFSSQGD-LWSGGEGGVIKIWPWESI------------------------EKSLSLKPEEKHMA 307 (1133)
Q Consensus 254 ~~~~l~gH~~~V~-sl~fsp~g~-L~Sgs~DgtI~iWdl~~~------------------------~~~l~~~~~~~~l~ 307 (1133)
....+..-.+++. .=++...+. ++--+..|.|.--|+... ...+.+++...++.
T Consensus 174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rly 253 (342)
T PF06433_consen 174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLY 253 (342)
T ss_dssp EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEE
T ss_pred eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEE
Confidence 0011111122222 112222222 433455555554433321 33445555555555
Q ss_pred EEeecce------------EEEccCceeeeccccCCCCCeEEEEecCCceEEE--ecCCCceeEeecCCCceeEEEecCC
Q 043350 308 ALLVERS------------FIDLRAQVTVNGACSISSTEIKCMLSDHARARVW--CAQPLSFSLWDARSKELLKVFNIEG 373 (1133)
Q Consensus 308 s~~~d~s------------~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vw--ss~d~~I~lWD~~tg~~l~~~~~h~ 373 (1133)
.+...+. .+|+.+++.+..+.- ..+-..+.++.+..-.++ +..++.+.+||..+|+.++.+..-+
T Consensus 254 vLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 254 VLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp EEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---S
T ss_pred EEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccC
Confidence 5443221 445556665554432 111113444555555554 3567899999999999999886543
No 387
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.78 E-value=1.1 Score=56.51 Aligned_cols=93 Identities=22% Similarity=0.362 Sum_probs=62.7
Q ss_pred ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCC
Q 043350 172 GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNP 251 (1133)
Q Consensus 172 s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~ 251 (1133)
+..|.|-..|+.+..+. .|. ..--.+||.|++|+.+|.+++.|-.+|.|.+||+...
T Consensus 106 Ts~ghvl~~d~~~nL~~--~~~--------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~------- 162 (1206)
T KOG2079|consen 106 TSHGHVLLSDMTGNLGP--LHQ--------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA------- 162 (1206)
T ss_pred cCchhhhhhhhhcccch--hhc--------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccCC-------
Confidence 55667877777663331 122 0112569999999999999999999999999999861
Q ss_pred cccccccccCCCCeEEEE---EeeCCc-EEEEeCCCcEEEEeC
Q 043350 252 FKEGLSWQAHRGPVLAMI---FSSQGD-LWSGGEGGVIKIWPW 290 (1133)
Q Consensus 252 ~~~~~~l~gH~~~V~sl~---fsp~g~-L~Sgs~DgtI~iWdl 290 (1133)
+....+.-|..+++++- +..++. ++++...|. +|.+
T Consensus 163 -k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 163 -KILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred -cceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 33444555555555444 444555 888877776 6765
No 388
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=87.90 E-value=0.29 Score=60.07 Aligned_cols=176 Identities=14% Similarity=0.141 Sum_probs=100.7
Q ss_pred CceeEeecC--CCceeEEEec-----CCcceeEEEeCC---CCCccccccceEEEEeeCCCCccc--cccccccceeecc
Q 043350 353 LSFSLWDAR--SKELLKVFNI-----EGHIENRVDTQS---VQDQPVEDEMKVKFVSSNKKEKPH--GFLQRSRNAIMGA 420 (1133)
Q Consensus 353 ~~I~lWD~~--tg~~l~~~~~-----h~~~v~~l~~sp---~g~~~~e~e~~v~lasgs~Dg~i~--~~~~~~~~~~~~~ 420 (1133)
|.+.+||+. .|+....+.. .+..+.-+.|.| +..+ +..+-.+++++ .|+......+.+|
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~---------ic~~~~~~~i~lL~~~ra~~~l~rsH 223 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVY---------ICYGLKGGEIRLLNINRALRSLFRSH 223 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccce---------eeeccCCCceeEeeechHHHHHHHhc
Confidence 445667665 5655443322 233334444544 3333 55667777777 4554444445566
Q ss_pred CCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC--CC----CeeEEEecCC-cceeE-EecCC--
Q 043350 421 ADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG--NG----NRVSDILHHQ-CAVQC-FCTYG-- 489 (1133)
Q Consensus 421 ~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~--~g----~~l~~~~~h~-~~V~~-fs~dg-- 489 (1133)
...+..+++-..|- ..+.. .|||| .++.++.||.++.|.+ .| .|+...+.|. .+-.| .+.+.
T Consensus 224 s~~~~d~a~~~~g~-----~~l~~--lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~ 296 (1283)
T KOG1916|consen 224 SQRVTDMAFFAEGV-----LKLAS--LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEI 296 (1283)
T ss_pred CCCcccHHHHhhch-----hhhee--eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccc
Confidence 66665555442221 11222 79999 9999999999999987 55 4667777777 55566 32222
Q ss_pred --------CEEEEEe-cCCeEEEEeCCC-Cc--------ceeeeccccCeEEeeec---ccceeeecccCCeeecc
Q 043350 490 --------SRMYVGY-VSGYLQILDLDG-NL--------TASWIAHSSPVLKLAVG---VDHIYSLAAHGGIRGWT 544 (1133)
Q Consensus 490 --------~~Lasgs-~DG~I~vwd~~g-~~--------l~~~~~H~~~V~~l~fs---~~~L~S~s~Dg~I~lW~ 544 (1133)
.++++++ .+..+++|.... ++ +.....|++.|+.+... -..+++-+-|++|.+|.
T Consensus 297 ~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~q 372 (1283)
T KOG1916|consen 297 LVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQ 372 (1283)
T ss_pred cCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhh
Confidence 1344444 466788887542 21 12222466666654433 44556667788888886
No 389
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=87.78 E-value=44 Score=36.66 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=42.8
Q ss_pred CCeEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCCCCCCCccccc--ccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEE
Q 043350 213 SPTMCLMVDCGNR-LVWTGHKDGKIRSWKMDQTLDDANNPFKEGL--SWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIW 288 (1133)
Q Consensus 213 s~V~~la~spd~~-~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~--~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iW 288 (1133)
..+..|+|+|+.+ ++++....+.|...+.++ +.+. .+.+ .+..-+|++..++. +++--.++.+.+.
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G---------~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLDG---------KVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIF 91 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----------EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCCC---------CEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEE
Confidence 3589999999755 556666678887777765 3333 2333 35677888887777 4444457888777
Q ss_pred eCC
Q 043350 289 PWE 291 (1133)
Q Consensus 289 dl~ 291 (1133)
++.
T Consensus 92 ~~~ 94 (248)
T PF06977_consen 92 TID 94 (248)
T ss_dssp EE-
T ss_pred EEe
Confidence 764
No 390
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.43 E-value=12 Score=44.68 Aligned_cols=57 Identities=18% Similarity=0.147 Sum_probs=35.6
Q ss_pred CCeEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q 043350 167 TQLWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQ 243 (1133)
Q Consensus 167 g~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~ 243 (1133)
|.+|. ..++.|.+||+++. ..+......+|..+.|++++.+++-.+.+ ++.|++.+.
T Consensus 117 G~LL~~~~~~~i~~yDw~~~-------------------~~i~~i~v~~vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 117 GNLLGVKSSDFICFYDWETG-------------------KLIRRIDVSAVKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp SSSEEEEETTEEEEE-TTT---------------------EEEEESS-E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred CcEEEEECCCCEEEEEhhHc-------------------ceeeEEecCCCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 66666 55557888887764 23444555579999999999999998875 688887654
No 391
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=87.03 E-value=8.8 Score=43.33 Aligned_cols=150 Identities=13% Similarity=0.188 Sum_probs=78.6
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE-ecCCcEEEeeCCCCC
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA-GQECGVRFWNLEDSY 186 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla-s~Dg~VrvWdl~~~~ 186 (1133)
....++|++++.++.-..+.-|+.. + ..+++|.. ...+.|.++. .+++.++. ...|.|++=+.....
T Consensus 150 ~~r~~dG~~vavs~~G~~~~s~~~G-----~---~~w~~~~r---~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 150 ITRSSDGRYVAVSSRGNFYSSWDPG-----Q---TTWQPHNR---NSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDG 218 (302)
T ss_dssp EEE-TTS-EEEEETTSSEEEEE-TT---------SS-EEEE-----SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEE
T ss_pred EEECCCCcEEEEECcccEEEEecCC-----C---ccceEEcc---CccceehhceecCCCCEEEEeCCcEEEEccCCCCc
Confidence 4558999999999887777788654 1 12455554 2234899998 89999988 888888887633322
Q ss_pred CcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeE
Q 043350 187 EPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVL 266 (1133)
Q Consensus 187 ~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~ 266 (1133)
..+..+. .+. ....-.+..++|.+++...|+|+. |++. ...+.+ +.++.......-...++
T Consensus 219 ~~w~~~~----------~~~--~~~~~~~ld~a~~~~~~~wa~gg~-G~l~-~S~DgG-----ktW~~~~~~~~~~~n~~ 279 (302)
T PF14870_consen 219 ETWSEPI----------IPI--KTNGYGILDLAYRPPNEIWAVGGS-GTLL-VSTDGG-----KTWQKDRVGENVPSNLY 279 (302)
T ss_dssp EEE---B-----------TT--SS--S-EEEEEESSSS-EEEEEST-T-EE-EESSTT-----SS-EE-GGGTTSSS---
T ss_pred ccccccc----------CCc--ccCceeeEEEEecCCCCEEEEeCC-ccEE-EeCCCC-----ccceECccccCCCCceE
Confidence 2221100 010 011124789999988777776655 5433 334442 22333333334456789
Q ss_pred EEEEeeCCcEEEEeCCCcEEEE
Q 043350 267 AMIFSSQGDLWSGGEGGVIKIW 288 (1133)
Q Consensus 267 sl~fsp~g~L~Sgs~DgtI~iW 288 (1133)
.|.|.+..+-+..+.+|.|.-|
T Consensus 280 ~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 280 RIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEEETTEEEEE-STTEEEEE
T ss_pred EEEEcCCCceEEECCCcEEEEe
Confidence 9999887774445678877655
No 392
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=86.87 E-value=39 Score=40.28 Aligned_cols=68 Identities=16% Similarity=0.164 Sum_probs=44.6
Q ss_pred CCCeEEEEEeCCCCEEEEEe---CC-CeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcE
Q 043350 212 TSPTMCLMVDCGNRLVWTGH---KD-GKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVI 285 (1133)
Q Consensus 212 ~s~V~~la~spd~~~LaSgs---~D-g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI 285 (1133)
...+..-+|+|+++.++--+ .. ..+.+++++.+.. ..+..+.++.. .-+|+|||+ +++...||..
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~------~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~ 262 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR------PVILNFNGNNG---APAFSPDGSKLAFSSSRDGSP 262 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc------ceeeccCCccC---CccCCCCCCEEEEEECCCCCc
Confidence 44566667888888765442 22 4588889887443 44445555533 348999999 6677778877
Q ss_pred EEE
Q 043350 286 KIW 288 (1133)
Q Consensus 286 ~iW 288 (1133)
.||
T Consensus 263 ~iy 265 (425)
T COG0823 263 DIY 265 (425)
T ss_pred cEE
Confidence 666
No 393
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=86.67 E-value=1.8 Score=34.18 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=22.9
Q ss_pred CCEEEEEECCCC-eEEEEecCCeEEEEeCCCCee
Q 043350 440 KRTEAMVLTADG-MIWSGCTNGLLVQWDGNGNRV 472 (1133)
Q Consensus 440 ~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g~~l 472 (1133)
..|..+.++|.. .|+.|..+|.|.++.++++.+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qri 45 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRI 45 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCcCc
Confidence 346667777777 777777777777777766544
No 394
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.66 E-value=55 Score=36.06 Aligned_cols=54 Identities=17% Similarity=0.261 Sum_probs=39.9
Q ss_pred EEeCCCCEEEEEeCC-----CeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEE
Q 043350 219 MVDCGNRLVWTGHKD-----GKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSG 279 (1133)
Q Consensus 219 a~spd~~~LaSgs~D-----g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sg 279 (1133)
.|||||.+|+..-.| |.|-|||.+. .+..+-.+..|.-.-..|.+.+||+ |+.+
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~-------~fqrvgE~~t~GiGpHev~lm~DGrtlvva 179 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDARE-------GFQRVGEFSTHGIGPHEVTLMADGRTLVVA 179 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEeccc-------ccceecccccCCcCcceeEEecCCcEEEEe
Confidence 367799999775443 7799999874 2456667888876677889999999 5543
No 395
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=86.38 E-value=12 Score=47.67 Aligned_cols=143 Identities=12% Similarity=0.096 Sum_probs=87.9
Q ss_pred CCEEEEe-cCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-e------CCCCeEE-ecCCcEEEeeCCCC
Q 043350 115 VEFIGSG-GGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-C------TDTQLWA-GQECGVRFWNLEDS 185 (1133)
Q Consensus 115 g~~lasg-s~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s------~dg~lla-s~Dg~VrvWdl~~~ 185 (1133)
..+|+.- .....+.--|++. |+. +.++..|... +|..++ . .+.+.++ -.+..+..||.+-.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~---GKV-V~eW~~~~~~------~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~ 562 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLER---GKV-VEEWKVHDDI------PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLS 562 (794)
T ss_pred cceEeecCCCCCceEEEecCC---CcE-EEEeecCCCc------ceeEecccccccccCCCceEEEECCCceEEeccCCC
Confidence 3344433 3445566666663 666 8888887751 366666 2 1344555 66788999998742
Q ss_pred CCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCe
Q 043350 186 YEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPV 265 (1133)
Q Consensus 186 ~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V 265 (1133)
...+- . .....+ .......|++-+.+| .||.|+.+|.||+||--+ . +....+.+-..+|
T Consensus 563 ~~k~v--~-------~~~k~Y---~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g--~------~AKT~lp~lG~pI 621 (794)
T PF08553_consen 563 GNKLV--D-------SQSKQY---SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG--K------RAKTALPGLGDPI 621 (794)
T ss_pred CCcee--e-------cccccc---ccCCCceEEEecCCc-eEEEEeCCCcEEeecccc--h------hhhhcCCCCCCCe
Confidence 11000 0 000011 223456788777665 679999999999999543 1 2223456778999
Q ss_pred EEEEEeeCCc--EEEEeCCCcEEEEeC
Q 043350 266 LAMIFSSQGD--LWSGGEGGVIKIWPW 290 (1133)
Q Consensus 266 ~sl~fsp~g~--L~Sgs~DgtI~iWdl 290 (1133)
.+|..+.||+ |+|| +..|.+.+.
T Consensus 622 ~~iDvt~DGkwilaTc--~tyLlLi~t 646 (794)
T PF08553_consen 622 IGIDVTADGKWILATC--KTYLLLIDT 646 (794)
T ss_pred eEEEecCCCcEEEEee--cceEEEEEE
Confidence 9999999999 4444 556777765
No 396
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=86.34 E-value=1.7 Score=45.92 Aligned_cols=104 Identities=16% Similarity=0.140 Sum_probs=61.4
Q ss_pred CCCCeEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCC
Q 043350 165 TDTQLWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMD 242 (1133)
Q Consensus 165 ~dg~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~ 242 (1133)
.+..+++ +.+|.|.+|++...-. |. .... .-..+|.|+.-.- ++.+..+++.||.|+.|++.
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~----~~-----------d~~~-s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~ 132 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGA----HS-----------DRVC-SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIK 132 (238)
T ss_pred cCceEEeecccceEEEecCCccch----HH-----------Hhhh-cccccceeccccccccceeEEeccCCceeeeccc
Confidence 3455666 8899999998873110 00 0001 1122333433332 56688999999999999988
Q ss_pred CCCCCCCCCcccccccccCC-CCeEEEEEeeCCc-EEEE--eCCCcEEEEeCCC
Q 043350 243 QTLDDANNPFKEGLSWQAHR-GPVLAMIFSSQGD-LWSG--GEGGVIKIWPWES 292 (1133)
Q Consensus 243 ~~~~~~~~~~~~~~~l~gH~-~~V~sl~fsp~g~-L~Sg--s~DgtI~iWdl~~ 292 (1133)
.. +.+-....|+ .++..+..+..+. |+++ |.|..++.|++..
T Consensus 133 p~--------k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 133 PN--------KVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cC--------ceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 61 2222334455 4555555555555 6666 7777777777764
No 397
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=86.34 E-value=73 Score=37.10 Aligned_cols=65 Identities=11% Similarity=0.156 Sum_probs=32.5
Q ss_pred EeCCCCEE-EEEeCCCeEEEE--eCCCCCCCCCCCcccccccccCC-CCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCC
Q 043350 220 VDCGNRLV-WTGHKDGKIRSW--KMDQTLDDANNPFKEGLSWQAHR-GPVLAMIFSSQGD-LWSGGEGGVIKIWPWESI 293 (1133)
Q Consensus 220 ~spd~~~L-aSgs~Dg~V~vW--d~~~~~~~~~~~~~~~~~l~gH~-~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~ 293 (1133)
|.++|+.| +++..||.-.+| |+.+ .++..|..+. ....+..++++++ |+-...+..|+--|+++.
T Consensus 43 ft~dG~kllF~s~~dg~~nly~lDL~t---------~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~ 112 (386)
T PF14583_consen 43 FTDDGRKLLFASDFDGNRNLYLLDLAT---------GEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTL 112 (386)
T ss_dssp B-TTS-EEEEEE-TTSS-EEEEEETTT----------EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT-
T ss_pred cCCCCCEEEEEeccCCCcceEEEEccc---------CEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcC
Confidence 55677554 555556655555 5555 4444444432 2233556677777 766666677888888874
No 398
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=85.52 E-value=1.1 Score=55.22 Aligned_cols=100 Identities=14% Similarity=0.131 Sum_probs=66.3
Q ss_pred EECCCC-eEEEEecCCeEEEEeCCCCeeEEEecCCccee-------------EEecCCCEEEEEecCCeEEEEeCC--C-
Q 043350 446 VLTADG-MIWSGCTNGLLVQWDGNGNRVSDILHHQCAVQ-------------CFCTYGSRMYVGYVSGYLQILDLD--G- 508 (1133)
Q Consensus 446 ~~spdg-~L~sgs~DG~I~vWd~~g~~l~~~~~h~~~V~-------------~fs~dg~~Lasgs~DG~I~vwd~~--g- 508 (1133)
-|.++. ++..+-.++.|++...+.....-+..|+..++ .+||||..+|.++.||.++.|.+. |
T Consensus 190 p~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~ 269 (1283)
T KOG1916|consen 190 PIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGK 269 (1283)
T ss_pred ccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeecc
Confidence 345556 77888888998887765433333444655444 289999999999999999999864 4
Q ss_pred ---Ccceeeeccc-cCeEEeeec-----------ccceeeecc-cCCeeeccc
Q 043350 509 ---NLTASWIAHS-SPVLKLAVG-----------VDHIYSLAA-HGGIRGWTF 545 (1133)
Q Consensus 509 ---~~l~~~~~H~-~~V~~l~fs-----------~~~L~S~s~-Dg~I~lW~l 545 (1133)
.++..|+.|+ .+-.|..++ -.++++++. ...+++|.-
T Consensus 270 ~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 270 IVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred ccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 3678899988 443333344 123444444 344777763
No 399
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=85.52 E-value=28 Score=39.74 Aligned_cols=108 Identities=12% Similarity=0.090 Sum_probs=70.2
Q ss_pred CCCCEEEEEECCCCeEEEEecCCeEEEEeCCCCe-eEEEec--CCcceeEEecCCCEEEEEecCCeEEEEeCC--CCcce
Q 043350 438 DTKRTEAMVLTADGMIWSGCTNGLLVQWDGNGNR-VSDILH--HQCAVQCFCTYGSRMYVGYVSGYLQILDLD--GNLTA 512 (1133)
Q Consensus 438 h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~g~~-l~~~~~--h~~~V~~fs~dg~~Lasgs~DG~I~vwd~~--g~~l~ 512 (1133)
..++|.+++.- ++.|+.+ .++.|.+|++.... +..... ....++++...+++|++|..-..|.++..+ +..+.
T Consensus 87 ~~g~V~ai~~~-~~~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~ 164 (321)
T PF03178_consen 87 VKGPVTAICSF-NGRLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLI 164 (321)
T ss_dssp ESS-EEEEEEE-TTEEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EE
T ss_pred ecCcceEhhhh-CCEEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEE
Confidence 35678888766 4454444 35899999994432 333222 344667788889999999988888887543 43333
Q ss_pred eeec--cccCeEEeeec--ccceeeecccCCeeeccccC
Q 043350 513 SWIA--HSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 513 ~~~~--H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s 547 (1133)
.+.. ....++++.|- ++.++.+..+|.|.++....
T Consensus 165 ~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 165 LVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 3333 23457777775 45899999999999998753
No 400
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=85.46 E-value=86 Score=37.14 Aligned_cols=43 Identities=19% Similarity=0.174 Sum_probs=34.3
Q ss_pred ccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEec
Q 043350 435 FVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILH 477 (1133)
Q Consensus 435 ~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~ 477 (1133)
+.+....+.++..+|++ +.++...=|.|.++|+ .+..++.+++
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKG 347 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKG 347 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhcc
Confidence 56777889999999999 6666666799999999 5666666665
No 401
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.36 E-value=18 Score=42.90 Aligned_cols=90 Identities=16% Similarity=0.234 Sum_probs=60.9
Q ss_pred EEEecCCeEEEEeC--CCC-eeEEEecCCc----ceeEEec-CCCEEEEEecCCeEEEEeCCCCc-ceeeeccccCeEEe
Q 043350 454 WSGCTNGLLVQWDG--NGN-RVSDILHHQC----AVQCFCT-YGSRMYVGYVSGYLQILDLDGNL-TASWIAHSSPVLKL 524 (1133)
Q Consensus 454 ~sgs~DG~I~vWd~--~g~-~l~~~~~h~~----~V~~fs~-dg~~Lasgs~DG~I~vwd~~g~~-l~~~~~H~~~V~~l 524 (1133)
+.|-.|..|.-||. ++. .+...+.|+. .-.|+.. ...+||+||.+|.|++||..+.. ...+.+-..+|..|
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hV 477 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHV 477 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeE
Confidence 45667888999998 554 4444444433 3445443 34599999999999999986643 33466778899988
Q ss_pred eec--ccceeeecccCCeeecc
Q 043350 525 AVG--VDHIYSLAAHGGIRGWT 544 (1133)
Q Consensus 525 ~fs--~~~L~S~s~Dg~I~lW~ 544 (1133)
..+ |++|+... +..+.+-+
T Consensus 478 dvtadGKwil~Tc-~tyLlLi~ 498 (644)
T KOG2395|consen 478 DVTADGKWILATC-KTYLLLID 498 (644)
T ss_pred EeeccCcEEEEec-ccEEEEEE
Confidence 777 77776544 44555544
No 402
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=83.72 E-value=8.3 Score=45.91 Aligned_cols=93 Identities=16% Similarity=0.245 Sum_probs=53.5
Q ss_pred EEEEECCCC--eEEEEecCCeEEEE--eCCCCeeEEEecCCcceeE---EecCCCEEEEEe-cCC--eEEEEeCCCCcce
Q 043350 443 EAMVLTADG--MIWSGCTNGLLVQW--DGNGNRVSDILHHQCAVQC---FCTYGSRMYVGY-VSG--YLQILDLDGNLTA 512 (1133)
Q Consensus 443 ~sl~~spdg--~L~sgs~DG~I~vW--d~~g~~l~~~~~h~~~V~~---fs~dg~~Lasgs-~DG--~I~vwd~~g~~l~ 512 (1133)
..-.|+||| .+++...||...+| |+.++.+..+. +...+.+ |+|||++|+-.+ ..| .|.+++.++....
T Consensus 241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt-~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ 319 (425)
T COG0823 241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLT-NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT 319 (425)
T ss_pred CCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecc-cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee
Confidence 345689999 66677778876555 66665554443 3334444 999999887665 344 4666667765433
Q ss_pred eeeccccCeEEeeec--ccceeeecc
Q 043350 513 SWIAHSSPVLKLAVG--VDHIYSLAA 536 (1133)
Q Consensus 513 ~~~~H~~~V~~l~fs--~~~L~S~s~ 536 (1133)
.+.-..+.=..-.++ +++|+..+.
T Consensus 320 riT~~~~~~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 320 RLTFSGGGNSNPVWSPDGDKIVFESS 345 (425)
T ss_pred EeeccCCCCcCccCCCCCCEEEEEec
Confidence 333222111133333 666666553
No 403
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=81.68 E-value=1.2e+02 Score=35.98 Aligned_cols=156 Identities=12% Similarity=0.160 Sum_probs=86.9
Q ss_pred CCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEEe------CCCCeEE-ecCCcEEEeeCCCCC
Q 043350 114 MVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIAC------TDTQLWA-GQECGVRFWNLEDSY 186 (1133)
Q Consensus 114 ~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~s------~dg~lla-s~Dg~VrvWdl~~~~ 186 (1133)
....|+.||..|.+||++.... +.. ..|..-|.+.+.+|-.|.+ .+...|| =.-+.+.||.+....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~--~~~-----~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~ 108 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGN--EFQ-----PEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVD 108 (418)
T ss_pred CccEEEEeccccEEEEEccCCC--CCC-----CccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecC
Confidence 4568999999999999987521 101 0133344555557777761 2344555 666788888874321
Q ss_pred CcCcCCCccccCCCCCCCceeeccCC-CCeEEEEEeC-----CCCEEEEEeCCCeEEEEeCCCCCCCCCCCccccccccc
Q 043350 187 EPGAGIGGRVRRGDEDAAPFYESANT-SPTMCLMVDC-----GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQA 260 (1133)
Q Consensus 187 ~~~~gh~~~v~~g~~~~~~~~~~~h~-s~V~~la~sp-----d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~g 260 (1133)
.. ..|+ +...-..+...++ .....+++-| .-.+|..=+.||.+.+++-+... +.....-.-
T Consensus 109 g~-~~~g------~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~------f~~~lp~~l 175 (418)
T PF14727_consen 109 GT-VEHG------NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA------FSRFLPDFL 175 (418)
T ss_pred CC-cccC------cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE------EEEEcCCCC
Confidence 11 0011 0000011111111 1122222222 24678888999999999987510 011111122
Q ss_pred CCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCC
Q 043350 261 HRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWES 292 (1133)
Q Consensus 261 H~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~ 292 (1133)
+.+| ++|.+.-+ |++++.+..|..|....
T Consensus 176 lPgP---l~Y~~~tDsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 176 LPGP---LCYCPRTDSFVTASSSWTLECYKYQD 205 (418)
T ss_pred CCcC---eEEeecCCEEEEecCceeEEEecHHH
Confidence 3445 47777777 99999999999998754
No 404
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=81.00 E-value=1.7e+02 Score=37.50 Aligned_cols=90 Identities=13% Similarity=0.144 Sum_probs=46.8
Q ss_pred CCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCC---ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCC---C
Q 043350 262 RGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESI---EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISST---E 334 (1133)
Q Consensus 262 ~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~---~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~---~ 334 (1133)
.-.|..|.++|+|. |+-.|..|.+ |-.+... ...+.........-+...+..++.......+..+.+||.+ .
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 45789999999999 7766665544 4333221 0011111112222222222223333334466777777753 2
Q ss_pred eEEEEecCCceEEEecCCCceeEeecCC
Q 043350 335 IKCMLSDHARARVWCAQPLSFSLWDARS 362 (1133)
Q Consensus 335 ~~~l~S~d~~i~vwss~d~~I~lWD~~t 362 (1133)
..++. ..|+++++||+..
T Consensus 163 ~l~vL----------tsdn~lR~y~~~~ 180 (717)
T PF10168_consen 163 HLVVL----------TSDNTLRLYDISD 180 (717)
T ss_pred eEEEE----------ecCCEEEEEecCC
Confidence 22333 3578888888864
No 405
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=80.67 E-value=14 Score=43.48 Aligned_cols=73 Identities=21% Similarity=0.201 Sum_probs=48.4
Q ss_pred ccCCCCCEEEEEECCCCeEEEEecCCeEEEEeCCCC-eeEEE--ec------CCcceeE--Ee---c--CC---CEEEEE
Q 043350 435 FVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGNGN-RVSDI--LH------HQCAVQC--FC---T--YG---SRMYVG 495 (1133)
Q Consensus 435 ~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~g~-~l~~~--~~------h~~~V~~--fs---~--dg---~~Lasg 495 (1133)
+....++|++++.|.=|+++.|.++|.+.|.|+.|. .+..- .. ....|++ |+ . |+ -.|++|
T Consensus 82 ~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp E---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 455688999999998889999999999999999883 33331 11 2234555 33 2 33 278999
Q ss_pred ecCCeEEEEeCC
Q 043350 496 YVSGYLQILDLD 507 (1133)
Q Consensus 496 s~DG~I~vwd~~ 507 (1133)
...|.+.+|.+-
T Consensus 162 Tn~G~v~~fkIl 173 (395)
T PF08596_consen 162 TNSGNVLTFKIL 173 (395)
T ss_dssp ETTSEEEEEEEE
T ss_pred eCCCCEEEEEEe
Confidence 999999999864
No 406
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=80.45 E-value=1.5 Score=41.73 Aligned_cols=13 Identities=38% Similarity=0.393 Sum_probs=6.9
Q ss_pred EEEEEccCCcccc
Q 043350 785 MVIFFGDFNYRLF 797 (1133)
Q Consensus 785 ~~f~~GDlNyRi~ 797 (1133)
.++++||||....
T Consensus 32 ~~Ii~GDFN~~~~ 44 (119)
T PF14529_consen 32 PIIIGGDFNAHHP 44 (119)
T ss_dssp SEEEEEE-----G
T ss_pred CEEEEeECCCCch
Confidence 6999999999654
No 407
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=80.28 E-value=8.4 Score=44.10 Aligned_cols=110 Identities=14% Similarity=0.114 Sum_probs=70.0
Q ss_pred eEEEEEeCCCCeEEecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEE
Q 043350 158 FLRNIACTDTQLWAGQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIR 237 (1133)
Q Consensus 158 ~V~~v~s~dg~llas~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~ 237 (1133)
+|++|+.-++.++++..+.|.+|++........ ......+ ..+.++... +++|+.|.....+.
T Consensus 90 ~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~--------------~~~~~~~-~~i~sl~~~--~~~I~vgD~~~sv~ 152 (321)
T PF03178_consen 90 PVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLK--------------KAFYDSP-FYITSLSVF--KNYILVGDAMKSVS 152 (321)
T ss_dssp -EEEEEEETTEEEEEETTEEEEEEEETTSSEEE--------------EEEE-BS-SSEEEEEEE--TTEEEEEESSSSEE
T ss_pred cceEhhhhCCEEEEeecCEEEEEEccCcccchh--------------hheecce-EEEEEEecc--ccEEEEEEcccCEE
Confidence 899999447777778899999999987431110 0011111 245555554 66999999888888
Q ss_pred EEeCCCCCCCCCCCcccccccc--cCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCC
Q 043350 238 SWKMDQTLDDANNPFKEGLSWQ--AHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWE 291 (1133)
Q Consensus 238 vWd~~~~~~~~~~~~~~~~~l~--gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~ 291 (1133)
++..+.. . ..+..+. .....++++.|-++++ ++.+..+|.|.++...
T Consensus 153 ~~~~~~~-----~--~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 153 LLRYDEE-----N--NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEETT-----T--E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEcc-----C--CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 8865430 0 2122222 2255688999997777 9999999999998775
No 408
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=79.91 E-value=1e+02 Score=34.02 Aligned_cols=155 Identities=14% Similarity=0.135 Sum_probs=78.6
Q ss_pred CCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE-ecCCcEEEeeCCCCCCcCc
Q 043350 113 PMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA-GQECGVRFWNLEDSYEPGA 190 (1133)
Q Consensus 113 p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla-s~Dg~VrvWdl~~~~~~~~ 190 (1133)
..+++|+.|+.+| +.+++.. ++..+ .... +.. .|..+. .++-.+++ =.|+.+.++++........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~--~~~~~-~~i~--~~~-------~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~ 71 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLS--DPSKP-TRIL--KLS-------SITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVST 71 (275)
T ss_pred cCCCEEEEEECCC-EEEEEec--CCccc-eeEe--ecc-------eEEEEEEecccCEEEEEcCCccEEEEchhhccccc
Confidence 4578999999999 6677662 11222 1111 222 477777 55544444 5679999999987332211
Q ss_pred CCCccccCCCCCCCceeeccCCCCeEEEE---EeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCc-ccccccccCCCCeE
Q 043350 191 GIGGRVRRGDEDAAPFYESANTSPTMCLM---VDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPF-KEGLSWQAHRGPVL 266 (1133)
Q Consensus 191 gh~~~v~~g~~~~~~~~~~~h~s~V~~la---~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~-~~~~~l~gH~~~V~ 266 (1133)
......+.+.. ..........+...+ -......|+.+.. .+|.+|....... .+ +....+. -...+.
T Consensus 72 ~~~~~~~~~~~---~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k-k~i~i~~~~~~~~----~f~~~~ke~~-lp~~~~ 142 (275)
T PF00780_consen 72 SAPLAFPKSRS---LPTKLPETKGVSFFAVNGGHEGSRRLCVAVK-KKILIYEWNDPRN----SFSKLLKEIS-LPDPPS 142 (275)
T ss_pred ccccccccccc---ccccccccCCeeEEeeccccccceEEEEEEC-CEEEEEEEECCcc----cccceeEEEE-cCCCcE
Confidence 10000000000 000011222334433 1123445555544 5999998875211 12 2222222 247889
Q ss_pred EEEEeeCCc-EEEEeCCCcEEEEeCCC
Q 043350 267 AMIFSSQGD-LWSGGEGGVIKIWPWES 292 (1133)
Q Consensus 267 sl~fsp~g~-L~Sgs~DgtI~iWdl~~ 292 (1133)
+++|. ++ |+.|..++ ..+.|+.+
T Consensus 143 ~i~~~--~~~i~v~~~~~-f~~idl~~ 166 (275)
T PF00780_consen 143 SIAFL--GNKICVGTSKG-FYLIDLNT 166 (275)
T ss_pred EEEEe--CCEEEEEeCCc-eEEEecCC
Confidence 99998 34 66555444 66778775
No 409
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=77.38 E-value=1.8e+02 Score=35.37 Aligned_cols=330 Identities=17% Similarity=0.234 Sum_probs=155.3
Q ss_pred cCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEEecCCcEEEeeCCCCCCcC
Q 043350 111 FQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWAGQECGVRFWNLEDSYEPG 189 (1133)
Q Consensus 111 ~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~llas~Dg~VrvWdl~~~~~~~ 189 (1133)
++..|. |-.|+.||-.++=... ++ +..+...+..+ .|..+. .-.|++|++.|..|.+.+..+-. +
T Consensus 172 ~D~~g~-lWvgT~dGL~~fd~~~----gk--alql~s~~~dk-----~I~al~~d~qg~LWVGTdqGv~~~e~~G~~--~ 237 (671)
T COG3292 172 FDANGR-LWVGTPDGLSYFDAGR----GK--ALQLASPPLDK-----AINALIADVQGRLWVGTDQGVYLQEAEGWR--A 237 (671)
T ss_pred eeccCc-EEEecCCcceEEcccc----ce--EEEcCCCcchh-----hHHHHHHHhcCcEEEEeccceEEEchhhcc--c
Confidence 455554 5557777776654333 22 23333222211 555556 77899999999999998876610 0
Q ss_pred cCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccC--CCCeEE
Q 043350 190 AGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAH--RGPVLA 267 (1133)
Q Consensus 190 ~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH--~~~V~s 267 (1133)
.... +. .....|..+.-+.+| .++.|+..|..+.--.+.+. .. ...+-| -..|.+
T Consensus 238 sn~~-----------~~---lp~~~I~ll~qD~qG-~lWiGTenGl~r~~l~rq~L-------q~-~~~~~~l~~S~vns 294 (671)
T COG3292 238 SNWG-----------PM---LPSGNILLLVQDAQG-ELWIGTENGLWRTRLPRQGL-------QI-PLSKMHLGVSTVNS 294 (671)
T ss_pred cccC-----------CC---CcchheeeeecccCC-CEEEeecccceeEecCCCCc-------cc-cccccCCccccccc
Confidence 0000 00 112234444444444 46888877754332222210 11 111222 346777
Q ss_pred EEEeeCCcEEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEE-----eecceEEEc-----------cCceeeeccccCC
Q 043350 268 MIFSSQGDLWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAAL-----LVERSFIDL-----------RAQVTVNGACSIS 331 (1133)
Q Consensus 268 l~fsp~g~L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~-----~~d~s~~d~-----------~~~~~v~~~~~~~ 331 (1133)
+-...+|.|+.++.+|.+++=+-+-....+....++...... ..+..++.. .++..+..... .
T Consensus 295 L~~D~dGsLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q-~ 373 (671)
T COG3292 295 LWLDTDGSLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQ-L 373 (671)
T ss_pred eeeccCCCEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeee-c
Confidence 777777889999999887765432222121111111110000 000000000 01111111111 1
Q ss_pred CCCeEEEEecCCceEEEecCCC-ceeEeecCC-CceeEEEec-CCcceeEEEeCCCCCccccccceEEEEeeCCCCccc-
Q 043350 332 STEIKCMLSDHARARVWCAQPL-SFSLWDARS-KELLKVFNI-EGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPH- 407 (1133)
Q Consensus 332 ~~~~~~l~S~d~~i~vwss~d~-~I~lWD~~t-g~~l~~~~~-h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~- 407 (1133)
-+..+..+..+...++|-++-. .+..|+..+ +..+....+ ..+.|..+--.|+++ +..|+.+|.++
T Consensus 374 Rg~nit~~~~d~~g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns----------LWIGTs~Glvk~ 443 (671)
T COG3292 374 RGMNITTTLEDSRGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS----------LWIGTSGGLVKR 443 (671)
T ss_pred cccccchhhhccCCcEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC----------EEEeccCCeEec
Confidence 1122223333346666764433 566666665 333333222 233455555555554 56788888775
Q ss_pred cccc-cccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeCCCCee-EEEecCCcceeE-
Q 043350 408 GFLQ-RSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGNGNRV-SDILHHQCAVQC- 484 (1133)
Q Consensus 408 ~~~~-~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~g~~l-~~~~~h~~~V~~- 484 (1133)
.... +..+.+ .+. ......+.|..+...++|.|+.++.+| |..|+.+++.+ ..+......-..
T Consensus 444 ~pe~~~v~n~l----------n~~---~~~l~~s~~~~lg~~~~g~Lw~a~g~g-va~~~sq~~~~~~~l~~~~q~qy~f 509 (671)
T COG3292 444 DPESGRVLNLL----------NPG---SHGLDGSRVEQLGLGPDGRLWLAAGSG-VAAWESQRRMFVPILDLTGQRQYSF 509 (671)
T ss_pred Cccccchhccc----------ccc---cCcCCcchhhhhccCCCCceEEEecce-eeeeccccceecccccccceeeEEE
Confidence 1111 111110 000 011223347778888999777777776 58898876433 222222233333
Q ss_pred EecCCCEEEEEecCCeEE
Q 043350 485 FCTYGSRMYVGYVSGYLQ 502 (1133)
Q Consensus 485 fs~dg~~Lasgs~DG~I~ 502 (1133)
+--.+++++.+-.-|.++
T Consensus 510 ~~~~~d~vw~~~~Rg~vr 527 (671)
T COG3292 510 VPVGGDEVWVHRLRGLVR 527 (671)
T ss_pred EEccCceEeeeeeceeee
Confidence 333567777776555443
No 410
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.24 E-value=5.1 Score=43.06 Aligned_cols=48 Identities=33% Similarity=0.597 Sum_probs=40.9
Q ss_pred cceEEEEEEECCccceEEEEEeecCCCcccCCCCCCccccCCCcCCCCceEEecCceEECCCCeEEEEEE
Q 043350 969 QDTCTLRITNKSAQEKAIFKIICDGQSTVKDDGDASDYRLRGSFGFPRWLEVTPAAGVIKPDSYIEVSVH 1038 (1133)
Q Consensus 969 ~~~~~~~i~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~p~~~~~~p~~~~~~~~~ 1038 (1133)
+....|+|+|+... ...|.+-|. .|.+..|.|..|+|.||++++|.+.
T Consensus 26 ~~~~~l~l~N~t~~-~vaFKvktT---------------------~p~~y~VrP~~G~i~p~~t~~i~v~ 73 (218)
T KOG0439|consen 26 QVKCSLTLKNPTKL-RVAFKVKTT---------------------APKLYCVRPNGGVIDPGSTVEIEVT 73 (218)
T ss_pred eEEEEEEEecCCCC-ceEEEEEcC---------------------CCCeEEEcCCcceECCCCcEEEEEE
Confidence 35678999999776 789998762 3688999999999999999999985
No 411
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=75.83 E-value=2.1e+02 Score=35.35 Aligned_cols=57 Identities=23% Similarity=0.388 Sum_probs=38.0
Q ss_pred CeEEEEeC-CCCeeEEEecCCcceeE-EecCCCEEEEEecCCeEEEEeCC-CCcceeeec
Q 043350 460 GLLVQWDG-NGNRVSDILHHQCAVQC-FCTYGSRMYVGYVSGYLQILDLD-GNLTASWIA 516 (1133)
Q Consensus 460 G~I~vWd~-~g~~l~~~~~h~~~V~~-fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~ 516 (1133)
|.|.-+|+ +|+.+..........-+ +...|..+++++.||.++.+|.+ |+++-.++-
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 56777887 66777666543222222 45567788888889999999987 666655543
No 412
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=75.10 E-value=4.8 Score=38.26 Aligned_cols=69 Identities=14% Similarity=0.121 Sum_probs=37.0
Q ss_pred cccceEEEEEEECCccceEEEEEeecCCCcccC---CCCCCccccCCCcCCC--CceEEecCceEECCCCeEEEEEEEee
Q 043350 967 QNQDTCTLRITNKSAQEKAIFKIICDGQSTVKD---DGDASDYRLRGSFGFP--RWLEVTPAAGVIKPDSYIEVSVHHEE 1041 (1133)
Q Consensus 967 ~~~~~~~~~i~n~~~~~~~~f~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~wl~~~p~~~~~~p~~~~~~~~~~~~ 1041 (1133)
++.....|+|+|.|.. ..+|.+-..+-.+... +|...... ..+ .+....|..-+|.||++.+|++++.-
T Consensus 7 ~~~~~~~itl~N~~~~-~~ty~~~~~~~~t~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~ 80 (112)
T PF06280_consen 7 GNKFSFTITLHNYGDK-PVTYTLSHVPVLTDKTDTEEGYSILVP-----PVPSISTVSFSPDTVTVPAGQSKTVTVTITP 80 (112)
T ss_dssp -SEEEEEEEEEE-SSS--EEEEEEEE-EEEEEE--ETTEEEEEE-----EE----EEE---EEEEE-TTEEEEEEEEEE-
T ss_pred CCceEEEEEEEECCCC-CEEEEEeeEEEEeeEeeccCCcccccc-----cccceeeEEeCCCeEEECCCCEEEEEEEEEe
Confidence 4456778999999998 8899886442112111 11100000 001 17777788889999999999988543
No 413
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=74.43 E-value=1.1e+02 Score=37.28 Aligned_cols=140 Identities=11% Similarity=0.071 Sum_probs=76.7
Q ss_pred CCeEEEEEeCCCCEEEEEe--CCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-----EEEEeCCCcE
Q 043350 213 SPTMCLMVDCGNRLVWTGH--KDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-----LWSGGEGGVI 285 (1133)
Q Consensus 213 s~V~~la~spd~~~LaSgs--~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-----L~Sgs~DgtI 285 (1133)
.||..++|....+.+.|.- .+|.+++=|- ...|.-..|.++.|.|-+. |+.......|
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---------------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhV 84 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---------------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHV 84 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCc---------------cEeeccceeeeeeecCcccCCCCceEEEeccceE
Confidence 4999999985555555542 1222222111 2234456799999999743 8888889999
Q ss_pred EEEeCCCCceeeEeCCCCceEEEEeecceEEEccCce--eeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecC-C
Q 043350 286 KIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQV--TVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDAR-S 362 (1133)
Q Consensus 286 ~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~--~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~-t 362 (1133)
.||.+.. +.....+++++- .-.++..- --.+..+||......+........+.+ ++ +
T Consensus 85 tVWqL~~-----s~~e~~K~l~sQ-----tcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~s----------V~~d 144 (671)
T PF15390_consen 85 TVWQLCP-----STTERNKLLMSQ-----TCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPS----------VHCD 144 (671)
T ss_pred EEEEecc-----Cccccccceeee-----eeeccCCcccCCCcccccCCCceEEEEecCceeEeee----------eeeC
Confidence 9998852 111222332222 11111111 123456677777777766633333222 23 2
Q ss_pred CceeEEEecCCcceeEEEeCCCCCc
Q 043350 363 KELLKVFNIEGHIENRVDTQSVQDQ 387 (1133)
Q Consensus 363 g~~l~~~~~h~~~v~~l~~sp~g~~ 387 (1133)
...++.=-...+.|.+.+|..||+.
T Consensus 145 ~srVkaDi~~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 145 SSRVKADIKTSGLIHCACWTKDGQR 169 (671)
T ss_pred CceEEEeccCCceEEEEEecCcCCE
Confidence 2222221133456889999999986
No 414
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.70 E-value=2.6e+02 Score=35.12 Aligned_cols=71 Identities=10% Similarity=0.110 Sum_probs=48.3
Q ss_pred CCCCeEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCcEEEEeCCCcEEEEe
Q 043350 211 NTSPTMCLMVDCGN-RLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGDLWSGGEGGVIKIWP 289 (1133)
Q Consensus 211 h~s~V~~la~spd~-~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWd 289 (1133)
.++...++..+|.. .-++ +.--.|+|++..+ ..+..+.-..+.+-.+.|+.+..|+....||++.+++
T Consensus 42 p~gGpIAV~r~p~~~~~~~--~a~~~I~If~~sG---------~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~ 110 (829)
T KOG2280|consen 42 PFGGPIAVTRSPSKLVPLY--SARPYIRIFNISG---------QLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYG 110 (829)
T ss_pred ccCCceEEEeccccccccc--ccceeEEEEeccc---------cchHHHHhcCCCeeeecccCCceEEEEeccceEEEee
Confidence 34455556655521 1112 3335689999987 5555544444588899999776699999999999999
Q ss_pred CCC
Q 043350 290 WES 292 (1133)
Q Consensus 290 l~~ 292 (1133)
+-.
T Consensus 111 ~~g 113 (829)
T KOG2280|consen 111 LLG 113 (829)
T ss_pred cch
Confidence 865
No 415
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=71.90 E-value=1.1e+02 Score=36.15 Aligned_cols=146 Identities=12% Similarity=0.152 Sum_probs=78.1
Q ss_pred cCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE-ecCCcEEEeeCCCCCCc
Q 043350 111 FQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA-GQECGVRFWNLEDSYEP 188 (1133)
Q Consensus 111 ~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla-s~Dg~VrvWdl~~~~~~ 188 (1133)
..++|.+++.|..-..++-|+.. .. .+..+.. .....+.++. .+++.+++ +.+|.+.. ..+... .
T Consensus 246 ~~~dG~~~~vg~~G~~~~s~d~G-----~~---~W~~~~~---~~~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~-~ 312 (398)
T PLN00033 246 RSPDGDYVAVSSRGNFYLTWEPG-----QP---YWQPHNR---ASARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGL-T 312 (398)
T ss_pred EcCCCCEEEEECCccEEEecCCC-----Cc---ceEEecC---CCccceeeeeEcCCCCEEEEeCCceEEE-ecCCCC-c
Confidence 35777777777665555556543 11 0111111 1112577777 77888888 77777544 222211 0
Q ss_pred CcCCCccccCCCCCCCceeecc---CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCe
Q 043350 189 GAGIGGRVRRGDEDAAPFYESA---NTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPV 265 (1133)
Q Consensus 189 ~~gh~~~v~~g~~~~~~~~~~~---h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V 265 (1133)
+.. ..+.... ....+..+.|.+++..+++ +..|.+....-.+ +.++....-..-....
T Consensus 313 ~~~------------~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~D~G------~tW~~~~~~~~~~~~l 373 (398)
T PLN00033 313 EED------------FDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRSTDGG------KSWKRDKGADNIAANL 373 (398)
T ss_pred ccc------------cceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeCCCC------cceeEccccCCCCcce
Confidence 000 0011101 1235788888887776555 4668776665333 1122222222234678
Q ss_pred EEEEEeeCCcEEEEeCCCcEEEE
Q 043350 266 LAMIFSSQGDLWSGGEGGVIKIW 288 (1133)
Q Consensus 266 ~sl~fsp~g~L~Sgs~DgtI~iW 288 (1133)
+.+.|.++++.+..+.+|.|.-|
T Consensus 374 y~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 374 YSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred eEEEEcCCCceEEEeCCcEEEEe
Confidence 89999888776666788887655
No 416
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=70.38 E-value=52 Score=35.22 Aligned_cols=102 Identities=8% Similarity=0.034 Sum_probs=65.0
Q ss_pred eEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecC
Q 043350 265 VLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDH 342 (1133)
Q Consensus 265 V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d 342 (1133)
-+.++|+.+.+ -++-+.+-+|.-||.+-....+ +..+.+++++... .-....+++..+ -.+
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~------------snr~~i~dlrk~~----~~e~~~PDGm~I-D~e 222 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDL------------SNRKVIFDLRKSQ----PFESLEPDGMTI-DTE 222 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccc------------cCcceeEEeccCC----CcCCCCCCcceE-ccC
Confidence 35788887776 6677788889889854210000 0111145554211 111133444444 335
Q ss_pred CceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCC
Q 043350 343 ARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQS 383 (1133)
Q Consensus 343 ~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp 383 (1133)
+.+.+.+-..++|.-.|..+|+.+.++......+++++|--
T Consensus 223 G~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 223 GNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 56655556689999999999999999999988999999864
No 417
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.01 E-value=92 Score=34.43 Aligned_cols=62 Identities=15% Similarity=0.158 Sum_probs=44.6
Q ss_pred cccCCCCCEEEEecC-----CCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEEecCCcEEEe
Q 043350 109 KPFQPMVEFIGSGGG-----TGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWAGQECGVRFW 180 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~-----dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~llas~Dg~VrvW 180 (1133)
--|+|||++|...-. -|.|-|||... +-..+.++..|.. .-..+. .+||.+++...|.|+.-
T Consensus 119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~---~fqrvgE~~t~Gi-------GpHev~lm~DGrtlvvanGGIeth 186 (366)
T COG3490 119 GVFSPDGRLLYATENDFDPNRGVIGVYDARE---GFQRVGEFSTHGI-------GPHEVTLMADGRTLVVANGGIETH 186 (366)
T ss_pred cccCCCCcEEEeecCCCCCCCceEEEEeccc---ccceecccccCCc-------CcceeEEecCCcEEEEeCCceecc
Confidence 458999999976533 37899998652 3333566666665 445566 89999999777888776
No 418
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=67.08 E-value=26 Score=27.27 Aligned_cols=21 Identities=14% Similarity=0.096 Sum_probs=17.3
Q ss_pred eEEecCceEECCCCeEEEEEE
Q 043350 1018 LEVTPAAGVIKPDSYIEVSVH 1038 (1133)
Q Consensus 1018 l~~~p~~~~~~p~~~~~~~~~ 1038 (1133)
+.++.....|.|||+..|+++
T Consensus 24 t~~~~~~~~i~PGes~~i~v~ 44 (45)
T PF07610_consen 24 TTAEYSKKPIAPGESGKIKVT 44 (45)
T ss_pred EEeeCCcceECCCCEEEEEEE
Confidence 466777788999999999875
No 419
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=67.03 E-value=95 Score=38.70 Aligned_cols=110 Identities=15% Similarity=0.124 Sum_probs=64.2
Q ss_pred CCceEEEecCCCceeEeecCCCceeEEEe-cCCcceeEEEeCC--CCCccccccceEEEEeeCCCCccccccccccce--
Q 043350 342 HARARVWCAQPLSFSLWDARSKELLKVFN-IEGHIENRVDTQS--VQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNA-- 416 (1133)
Q Consensus 342 d~~i~vwss~d~~I~lWD~~tg~~l~~~~-~h~~~v~~l~~sp--~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~-- 416 (1133)
-+.+.+.......+.|||.+.+.+...-. ...+.|..++|.. +++. +++-+....|..+.+.....
T Consensus 40 ~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qs---------iLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 40 IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQS---------ILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCE---------EEEEEcCcEEEEEEccchhhhc
Confidence 34444445677889999999887554322 3456688888754 6666 66666666665222211100
Q ss_pred eeccCCceEEEEEecCCcccCCC-CCEEEEEECCCCeEEEEecCCeEEEEeC
Q 043350 417 IMGAADAVRRVATRGAGAFVDDT-KRTEAMVLTADGMIWSGCTNGLLVQWDG 467 (1133)
Q Consensus 417 ~~~~~~~V~~v~~~p~g~~~~h~-~~V~sl~~spdg~L~sgs~DG~I~vWd~ 467 (1133)
....-..++.+... .++ .+|.+..+.++|.++.|+. ..+.|++.
T Consensus 111 ~~p~w~~i~~i~i~------~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDIS------SHTPHPIGDSIWLKDGTLVVGSG-NQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEee------cCCCCCccceeEecCCeEEEEeC-CEEEEECC
Confidence 01112245555544 233 4678888899996666653 35777765
No 420
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=66.34 E-value=67 Score=40.40 Aligned_cols=127 Identities=10% Similarity=0.078 Sum_probs=75.6
Q ss_pred eEEEEE---eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCcccc--CCCCCCCc-eeeccCCCCeEEEEEe--CCCCEE
Q 043350 158 FLRNIA---CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVR--RGDEDAAP-FYESANTSPTMCLMVD--CGNRLV 227 (1133)
Q Consensus 158 ~V~~v~---s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~--~g~~~~~~-~~~~~h~s~V~~la~s--pd~~~L 227 (1133)
.|..|. --+..+|+ ..||.|.+|.++.....+........ .......| +.+.+. ..++.|+++ ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~-~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVG-ASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecC-CceeEEEEEecCcceEE
Confidence 355555 22445555 88999999988662211111100000 00011223 344333 367999998 788999
Q ss_pred EEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCC-----c--EEEEeCCCcEEEEeC
Q 043350 228 WTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQG-----D--LWSGGEGGVIKIWPW 290 (1133)
Q Consensus 228 aSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g-----~--L~Sgs~DgtI~iWdl 290 (1133)
|.++....|.||-...... + +... .-..|...|-+|+|.++. . |++++-.|.+-+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~---r-~~~~-~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDE---R-FYHV-PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEecccc---c-cccc-cccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 9999999999987654211 0 0111 011266789999998763 2 778899999998887
No 421
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=65.42 E-value=25 Score=41.57 Aligned_cols=84 Identities=24% Similarity=0.390 Sum_probs=57.3
Q ss_pred EEEECCCC-eEEEEecCCeEEE---EeC--CC----CeeEEEec---CC--cceeE-----E--------ecCCCEEEEE
Q 043350 444 AMVLTADG-MIWSGCTNGLLVQ---WDG--NG----NRVSDILH---HQ--CAVQC-----F--------CTYGSRMYVG 495 (1133)
Q Consensus 444 sl~~spdg-~L~sgs~DG~I~v---Wd~--~g----~~l~~~~~---h~--~~V~~-----f--------s~dg~~Lasg 495 (1133)
.++.+|++ .|+.+..+..+.+ |+. .+ .......+ +. ..|++ + .+|...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 35677888 7777777766655 533 12 11111111 11 35554 3 1456799999
Q ss_pred ecCCeEEEEeCCCCcceeeeccccCeEEeeec
Q 043350 496 YVSGYLQILDLDGNLTASWIAHSSPVLKLAVG 527 (1133)
Q Consensus 496 s~DG~I~vwd~~g~~l~~~~~H~~~V~~l~fs 527 (1133)
..+|.|++|...|.++..-.-|.++|..+.+.
T Consensus 86 ~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTENGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEeccchHHHHHhcCccceEEEEec
Confidence 99999999999999887777799999999987
No 422
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=65.39 E-value=60 Score=38.42 Aligned_cols=140 Identities=12% Similarity=0.204 Sum_probs=80.7
Q ss_pred CCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCc--cccccceEEEEeeCCCCccccccccccceeeccCCceEEEE
Q 043350 351 QPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQ--PVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVA 428 (1133)
Q Consensus 351 ~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~--~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~ 428 (1133)
....+.--|+.-|+.+..+..+... -+.+.|...+ +..+. -+.|-.+..|...+.|... ..+.-..
T Consensus 488 ~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eq----tlvGlS~~svFrIDPR~~g------NKi~v~e 555 (776)
T COG5167 488 ERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQ----TLVGLSDYSVFRIDPRARG------NKIKVVE 555 (776)
T ss_pred CcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccc----eEEeecccceEEecccccC------Cceeeee
Confidence 3455666788889999888887766 4677776543 11111 2234444444333332111 0010011
Q ss_pred EecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeCCCCeeEE-EecCCcceeE--EecCCCEEEEEecCCeEEEEe
Q 043350 429 TRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGNGNRVSD-ILHHQCAVQC--FCTYGSRMYVGYVSGYLQILD 505 (1133)
Q Consensus 429 ~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~g~~l~~-~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd 505 (1133)
+. .+ .......+......|+++.|+..|-|++||.-|...++ +.+-...|.. .+.+|++|++.|. .++.+-|
T Consensus 556 sK---dY-~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d 630 (776)
T COG5167 556 SK---DY-KTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTD 630 (776)
T ss_pred eh---hc-cccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEe
Confidence 10 01 01112334445567799999999999999987654443 3344556665 7889998887774 4777888
Q ss_pred CC
Q 043350 506 LD 507 (1133)
Q Consensus 506 ~~ 507 (1133)
+.
T Consensus 631 ~~ 632 (776)
T COG5167 631 VP 632 (776)
T ss_pred cc
Confidence 75
No 423
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=65.08 E-value=17 Score=28.09 Aligned_cols=31 Identities=10% Similarity=0.138 Sum_probs=25.7
Q ss_pred CCeEEEEEeCCC---CEEEEEeCCCeEEEEeCCC
Q 043350 213 SPTMCLMVDCGN---RLVWTGHKDGKIRSWKMDQ 243 (1133)
Q Consensus 213 s~V~~la~spd~---~~LaSgs~Dg~V~vWd~~~ 243 (1133)
++|.|+.|+|++ .+|+-+-.-|.|.|+|++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 368999999843 5888888889999999984
No 424
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.53 E-value=41 Score=44.29 Aligned_cols=179 Identities=14% Similarity=0.188 Sum_probs=85.5
Q ss_pred eEEEecCCCceeEeecCCCceeEEEecCCcceeEEEe-CCCCCccccccceEEEEeeC-CCCccc--cccccccceeecc
Q 043350 345 ARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDT-QSVQDQPVEDEMKVKFVSSN-KKEKPH--GFLQRSRNAIMGA 420 (1133)
Q Consensus 345 i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~-sp~g~~~~e~e~~v~lasgs-~Dg~i~--~~~~~~~~~~~~~ 420 (1133)
.+.|-.-|+.+.+|+..++.-...+.+-...|..|.. -|.... ...+++--++.+. .+=.+. .++......
T Consensus 91 ~RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgv-Fv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~---- 165 (1311)
T KOG1900|consen 91 GRAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGV-FVPEIQHLLVVATPVEIVILGVSFDEFTGEL---- 165 (1311)
T ss_pred cceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCc-chhhhheeEEecccceEEEEEEEeccccCcc----
Confidence 3577788999999999988888888877777665543 232222 1111110022222 221111 111100000
Q ss_pred CCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeCCCCeeEEEecCCcceeEEecCCCEEEEEecCCe
Q 043350 421 ADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGNGNRVSDILHHQCAVQCFCTYGSRMYVGYVSGY 500 (1133)
Q Consensus 421 ~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~g~~l~~~~~h~~~V~~fs~dg~~Lasgs~DG~ 500 (1133)
..-+.++. ..-....|.++....+|.++.++.|| .+|.+.-+....+....... +++. ++.=..
T Consensus 166 ~~f~~~~~------i~~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~K--iclt------~s~ls~ 229 (1311)
T KOG1900|consen 166 SIFNTSFK------ISVDGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRK--ICLT------KSVLSS 229 (1311)
T ss_pred ccccccee------eecCCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhccccc--ccCc------hhHHHH
Confidence 00000111 11223457777777777777777777 44433100000000000000 1111 000000
Q ss_pred EEEEeCCCCcceeeeccccCeEEeeec--ccceeeecccCCeeeccccCCC
Q 043350 501 LQILDLDGNLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTSPS 549 (1133)
Q Consensus 501 I~vwd~~g~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s~~ 549 (1133)
+. ..++...-.|.++|..++++ ...+++-+..|+|..|++...+
T Consensus 230 lv-----Ps~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 230 LV-----PSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred hh-----hhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCC
Confidence 00 00111113577899999998 6678889999999999997743
No 425
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=63.72 E-value=4.4e+02 Score=34.30 Aligned_cols=152 Identities=12% Similarity=0.056 Sum_probs=76.9
Q ss_pred EecCCceEEEecCCCceeEeecCCCceeEEEe-cCCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccccccccee
Q 043350 339 LSDHARARVWCAQPLSFSLWDARSKELLKVFN-IEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAI 417 (1133)
Q Consensus 339 ~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~-~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~ 417 (1133)
++.+....+..+.++.+...++..+.+..... .-...|.|++++|-++-.- .-.+ ++.|..+..+.
T Consensus 495 ~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~--~s~~-~aVG~Ws~~~~---------- 561 (1096)
T KOG1897|consen 495 VSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPN--KSRL-LAVGLWSDISM---------- 561 (1096)
T ss_pred EeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCC--cceE-EEEEeecceEE----------
Confidence 33333344444444555555665554222221 1234588999998643200 0012 66776665553
Q ss_pred eccCCceEEEEEecCCccc--------CCCCCEEEEEECCCC-eEEEEecCCeEEEEeCC--CCeeEEEe---cCCccee
Q 043350 418 MGAADAVRRVATRGAGAFV--------DDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGN--GNRVSDIL---HHQCAVQ 483 (1133)
Q Consensus 418 ~~~~~~V~~v~~~p~g~~~--------~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~--g~~l~~~~---~h~~~V~ 483 (1133)
.+.+.|+..+. .-...|....+-.|. +|.++..||.+..|.++ .-.+...+ -...++.
T Consensus 562 --------~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~ 633 (1096)
T KOG1897|consen 562 --------ILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPIS 633 (1096)
T ss_pred --------EEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcE
Confidence 22222222211 112234444455555 99999999999887652 21222211 1223333
Q ss_pred --EEecCCCEEEEEecCCeEEEEeCCCCcc
Q 043350 484 --CFCTYGSRMYVGYVSGYLQILDLDGNLT 511 (1133)
Q Consensus 484 --~fs~dg~~Lasgs~DG~I~vwd~~g~~l 511 (1133)
.|+..++.-+-+..|.-.-+|.-++++.
T Consensus 634 Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv 663 (1096)
T KOG1897|consen 634 LRTFSSKSRTAVFALSDRPTVIYSSNGKLV 663 (1096)
T ss_pred EEEEeeCCceEEEEeCCCCEEEEecCCcEE
Confidence 2777766544555677777887777653
No 426
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=63.58 E-value=2.3e+02 Score=31.08 Aligned_cols=118 Identities=9% Similarity=0.106 Sum_probs=62.6
Q ss_pred eEEEEE-eCC-CCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCC
Q 043350 158 FLRNIA-CTD-TQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKD 233 (1133)
Q Consensus 158 ~V~~v~-s~d-g~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~D 233 (1133)
.+..|+ .++ +.++| ...+.|...+.++.. + ..+.-.-++..-.|++..++.++++--.+
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~v--l---------------r~i~l~g~~D~EgI~y~g~~~~vl~~Er~ 85 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKV--L---------------RRIPLDGFGDYEGITYLGNGRYVLSEERD 85 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEETT--E--E---------------EEEE-SS-SSEEEEEE-STTEEEEEETTT
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcCCCCE--E---------------EEEeCCCCCCceeEEEECCCEEEEEEcCC
Confidence 688888 775 55777 445566555654311 1 00111124456778887778777776678
Q ss_pred CeEEEEeCCCCCCC-CCCCccccc-cc-ccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCC
Q 043350 234 GKIRSWKMDQTLDD-ANNPFKEGL-SW-QAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWES 292 (1133)
Q Consensus 234 g~V~vWd~~~~~~~-~~~~~~~~~-~l-~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~ 292 (1133)
+.+.+.++...... ....++.+. .+ ..+...+-.|+|.+.++ |+.+-+..-.+++.+..
T Consensus 86 ~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 86 QRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp TEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred CcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 99999998531110 000001111 11 23566789999999988 77777776666766543
No 427
>PRK13205 ureB urease subunit beta; Reviewed
Probab=62.69 E-value=27 Score=34.35 Aligned_cols=94 Identities=21% Similarity=0.264 Sum_probs=53.4
Q ss_pred eEEecCeEEecc-cceEEEEEEECCccc---eEEEEEeecCCCcccCCCCCCccccCC-CcCCCCceEEecCce---EEC
Q 043350 957 TIVSTESIILQN-QDTCTLRITNKSAQE---KAIFKIICDGQSTVKDDGDASDYRLRG-SFGFPRWLEVTPAAG---VIK 1028 (1133)
Q Consensus 957 ~~~~~~~~~~~~-~~~~~~~i~n~~~~~---~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~wl~~~p~~~---~~~ 1028 (1133)
.++..+.|.+.. .+...|+++|||..+ -.||.|..-.+... = .|. .++ .+..-.+| ..+
T Consensus 6 i~~~~g~IelN~GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~-F--------DR~~A~G----~RLdIPAGTAVRFE 72 (162)
T PRK13205 6 YILSSESLTGNVGREAKTIEIINTGDRPVQIGSHFHFAEVNPSIS-F--------DRSEGYG----FRLDIPSGTAVRLE 72 (162)
T ss_pred EecCCCCeEeCCCCcEEEEEEEeCCCCceEeccccchhhcCcccc-c--------cHHHhcC----cccccCCCCeEeEC
Confidence 345556677664 456789999999751 23788863221110 0 010 111 13333333 689
Q ss_pred CCCeEEEEEE-Eee---ccchhhhhcCCCCCCcccccCCceeEEEEEEEc
Q 043350 1029 PDSYIEVSVH-HEE---FHTLEEFVDGIPQNWWCEDTRDKEVMLSLVVQG 1074 (1133)
Q Consensus 1029 p~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 1074 (1133)
||++.+|+|- +-- ++-...+.+| .+++..+.+++|
T Consensus 73 PGe~ktV~LV~igG~R~V~Gfnglv~G-----------~ld~~~~~~~~~ 111 (162)
T PRK13205 73 PGDARTVNLVAIGGDRIVAGFRDLVDG-----------PLEDLKVNVWEG 111 (162)
T ss_pred CCCeEEEEEEEccCceEEEccCccccC-----------ccCcceeeeEec
Confidence 9999999987 322 2222334444 556777778887
No 428
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=62.38 E-value=51 Score=35.50 Aligned_cols=69 Identities=9% Similarity=0.167 Sum_probs=47.5
Q ss_pred EeCCCCEEEEEeCCCeEEEEeCCCCCCCCCC-Ccccccccc-------cCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeC
Q 043350 220 VDCGNRLVWTGHKDGKIRSWKMDQTLDDANN-PFKEGLSWQ-------AHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPW 290 (1133)
Q Consensus 220 ~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~-~~~~~~~l~-------gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl 290 (1133)
+..++++|++-..+|.+++||+......-.. .+.+ .+. .....|..+.++.+|. |++-+ +|....|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~p--ll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAP--LLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHH--HhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 3347888999999999999999864321111 1111 122 3567899999998899 77766 477888887
Q ss_pred C
Q 043350 291 E 291 (1133)
Q Consensus 291 ~ 291 (1133)
+
T Consensus 95 ~ 95 (219)
T PF07569_consen 95 D 95 (219)
T ss_pred c
Confidence 5
No 429
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=62.18 E-value=73 Score=39.68 Aligned_cols=110 Identities=9% Similarity=0.093 Sum_probs=67.8
Q ss_pred eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC--CCCEEEEEeCCCeEEEE
Q 043350 164 CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC--GNRLVWTGHKDGKIRSW 239 (1133)
Q Consensus 164 s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp--d~~~LaSgs~Dg~V~vW 239 (1133)
+.-++..+ +....+.|||........ .+ . + ....+|.++.|.. +++.+++-+....|.++
T Consensus 38 ss~~k~a~V~~~~~~LtIWD~~~~~lE~--~~-----------~--f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~ 101 (631)
T PF12234_consen 38 SSIKKIAVVDSSRSELTIWDTRSGVLEY--EE-----------S--F-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLY 101 (631)
T ss_pred cccCcEEEEECCCCEEEEEEcCCcEEEE--ee-----------e--e-cCCCceeeceeeecCCCCEEEEEEcCcEEEEE
Confidence 44444433 556689999998743110 00 1 1 2346899999965 88988888899999999
Q ss_pred eCC-CCCCCCCCCccccc--ccccCC-CCeEEEEEeeCCcEEEEeCCCcEEEEeC
Q 043350 240 KMD-QTLDDANNPFKEGL--SWQAHR-GPVLAMIFSSQGDLWSGGEGGVIKIWPW 290 (1133)
Q Consensus 240 d~~-~~~~~~~~~~~~~~--~l~gH~-~~V~sl~fsp~g~L~Sgs~DgtI~iWdl 290 (1133)
.-. .......+.+..+. .+..|+ .+|.+..|.++|.|+.|+ ++.+.|++-
T Consensus 102 ~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 102 TQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDK 155 (631)
T ss_pred EccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECC
Confidence 742 11111122233333 234554 689999999999955554 456777764
No 430
>PRK13684 Ycf48-like protein; Provisional
Probab=61.56 E-value=2.7e+02 Score=32.08 Aligned_cols=151 Identities=15% Similarity=0.170 Sum_probs=77.8
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE-ecCCcEEEeeCCCCC
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA-GQECGVRFWNLEDSY 186 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla-s~Dg~VrvWdl~~~~ 186 (1133)
+.+.|++.++++|..-..++.++-. ++. +..+.. .....++++. .+++.+++ +..|.+++=..+..
T Consensus 178 i~~~~~g~~v~~g~~G~i~~s~~~g----g~t----W~~~~~---~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G- 245 (334)
T PRK13684 178 LRRSPDGKYVAVSSRGNFYSTWEPG----QTA----WTPHQR---NSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDL- 245 (334)
T ss_pred EEECCCCeEEEEeCCceEEEEcCCC----CCe----EEEeeC---CCcccceeeeEcCCCCEEEEecCCEEEEccCCCC-
Confidence 5567888777766553333333322 222 222211 1123678887 78888777 77776654222221
Q ss_pred CcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeE
Q 043350 187 EPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVL 266 (1133)
Q Consensus 187 ~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~ 266 (1133)
.++.... .+.. .....+..+++.+++..++ ++.+|.|. ...+.+. .++......+-....+
T Consensus 246 ~sW~~~~----------~~~~--~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~-----tW~~~~~~~~~~~~~~ 306 (334)
T PRK13684 246 ESWSKPI----------IPEI--TNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGK-----TWEKDPVGEEVPSNFY 306 (334)
T ss_pred Ccccccc----------CCcc--ccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCC-----CCeECCcCCCCCcceE
Confidence 1111000 0000 0112467788888777555 55667655 3444311 1222211122234678
Q ss_pred EEEEeeCCcEEEEeCCCcEEEEeC
Q 043350 267 AMIFSSQGDLWSGGEGGVIKIWPW 290 (1133)
Q Consensus 267 sl~fsp~g~L~Sgs~DgtI~iWdl 290 (1133)
.+.|..+++.+..+..|.|..|+-
T Consensus 307 ~~~~~~~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 307 KIVFLDPEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred EEEEeCCCceEEECCCceEEEecC
Confidence 888887777666778898887764
No 431
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=60.77 E-value=1.5e+02 Score=35.08 Aligned_cols=107 Identities=17% Similarity=0.241 Sum_probs=48.9
Q ss_pred CCceeEeecCCCceeEEEecCCc--ceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEE
Q 043350 352 PLSFSLWDARSKELLKVFNIEGH--IENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVAT 429 (1133)
Q Consensus 352 d~~I~lWD~~tg~~l~~~~~h~~--~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~ 429 (1133)
..++.+||+.++++++++..... ....+.|..+..... -++.+-...+|..|....-..+ .+..+.-
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~------gFvg~aLss~i~~~~k~~~g~W-----~a~kVi~ 289 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANY------GFVGCALSSSIWRFYKDDDGEW-----AAEKVID 289 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--E------EEEEEE--EEEEEEEE-ETTEE-----EEEEEEE
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccc------eEEEEeccceEEEEEEcCCCCe-----eeeEEEE
Confidence 46899999999999999986543 344666665543200 1333333344432222111111 0111221
Q ss_pred ecCCc------------ccCCCCCEEEEEECCCC-eEEE-EecCCeEEEEeCCC
Q 043350 430 RGAGA------------FVDDTKRTEAMVLTADG-MIWS-GCTNGLLVQWDGNG 469 (1133)
Q Consensus 430 ~p~g~------------~~~h~~~V~sl~~spdg-~L~s-gs~DG~I~vWd~~g 469 (1133)
-|... +..-..-|+.|.+|.|. +|+. .-.+|.|+.||++.
T Consensus 290 ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 290 IPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp E--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred CCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 12111 12224558889999999 5554 45699999999954
No 432
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=60.00 E-value=1.1e+02 Score=38.96 Aligned_cols=125 Identities=8% Similarity=-0.009 Sum_probs=76.8
Q ss_pred eEEEEecCCceEEEecCCCceeEeecCCCc---------eeEEEe---cCCcceeEEEeCCCCCccccccceEEEEeeCC
Q 043350 335 IKCMLSDHARARVWCAQPLSFSLWDARSKE---------LLKVFN---IEGHIENRVDTQSVQDQPVEDEMKVKFVSSNK 402 (1133)
Q Consensus 335 ~~~l~S~d~~i~vwss~d~~I~lWD~~tg~---------~l~~~~---~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~ 402 (1133)
..+++..|+.+.+|++.+..+..-+++... ..+++. .-.-.|..+.++|+|.+ ++..+.
T Consensus 34 rNLl~~~d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~---------lal~G~ 104 (717)
T PF10168_consen 34 RNLLACRDGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSL---------LALVGP 104 (717)
T ss_pred eeeEEEeCCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCE---------EEEEcC
Confidence 456666778899999888877666665321 111221 11234779999999998 887777
Q ss_pred CCccccccccc---cceeeccCCceEEEEEecCCcc--cCCCCCEEEEEECCC---C-eEEEEecCCeEEEEeCC
Q 043350 403 KEKPHGFLQRS---RNAIMGAADAVRRVATRGAGAF--VDDTKRTEAMVLTAD---G-MIWSGCTNGLLVQWDGN 468 (1133)
Q Consensus 403 Dg~i~~~~~~~---~~~~~~~~~~V~~v~~~p~g~~--~~h~~~V~sl~~spd---g-~L~sgs~DG~I~vWd~~ 468 (1133)
.|.......+. ...+.+....+.+-.+.-+..+ ......|..+.|+|. + .|+.=..|+++++||+.
T Consensus 105 ~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 105 RGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDIS 179 (717)
T ss_pred CcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecC
Confidence 77654222211 1123333334443333322222 234557888999886 3 88888999999999993
No 433
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=59.03 E-value=6.7e+02 Score=34.85 Aligned_cols=125 Identities=18% Similarity=0.261 Sum_probs=72.5
Q ss_pred CCCEEEEEECCCCeEEEEecCCeEEEEeCCCCeeE-EEecCCcceeEEecCCC-EEEEEecCCeEEEEeCC---C-----
Q 043350 439 TKRTEAMVLTADGMIWSGCTNGLLVQWDGNGNRVS-DILHHQCAVQCFCTYGS-RMYVGYVSGYLQILDLD---G----- 508 (1133)
Q Consensus 439 ~~~V~sl~~spdg~L~sgs~DG~I~vWd~~g~~l~-~~~~h~~~V~~fs~dg~-~Lasgs~DG~I~vwd~~---g----- 508 (1133)
...|.++++-.+..+++-...|.+......+..+. ...+-.+.|..++-|.+ .|++-..+|.++-.+-+ +
T Consensus 702 ~~~i~a~Avv~~~~fvald~qg~lt~h~k~g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~~ 781 (1774)
T PF11725_consen 702 DRVITAFAVVNDNKFVALDDQGDLTAHQKPGRPVPLSRPGLSGEIKDLALDEKQNLYALTSTGELFRLPKEAWQGNAEGD 781 (1774)
T ss_pred cCcceeEEEEcCCceEEeccCCccccccCCCCCccCCCCCCCcchhheeeccccceeEecCCCceeecCHHHhhCcccCC
Confidence 45678888777777888888888888875554221 11223566777666654 67888888987765532 1
Q ss_pred Ccceeeec----cccCeEEeeec-ccceeeecccC----C-----eeeccccCCCCchhhhHHHHhhhh
Q 043350 509 NLTASWIA----HSSPVLKLAVG-VDHIYSLAAHG----G-----IRGWTFTSPSPLDNIIRSEIAAKE 563 (1133)
Q Consensus 509 ~~l~~~~~----H~~~V~~l~fs-~~~L~S~s~Dg----~-----I~lW~l~s~~~ld~~i~~eL~~r~ 563 (1133)
..-..|+. -..+|.++..+ ...+...-.|+ . -.-|.-..+.+.+......+..|.
T Consensus 782 ~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~d~~~~~~~~qlk~~~W~~~~~~~~~~~~~~~~f~Rl 850 (1774)
T PF11725_consen 782 QMAAKWQKVALPDEQPVKSLRTNDDNHLSAQIEDGANGQGLHQLKAGEWQAFEPRPVEENGLNDVFNRL 850 (1774)
T ss_pred ccccCceeccCCCCCchhhhhcCCCCceEEEecCCCcchhhhhhhcccccccCCCCcccchHHHHHHHH
Confidence 12244543 23566666666 33333333333 1 236877666666555544444443
No 434
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=58.25 E-value=73 Score=30.56 Aligned_cols=67 Identities=24% Similarity=0.294 Sum_probs=46.0
Q ss_pred EEecCeEEecc-cceEEEEEEECCccceEEEEEeecCCCcccCCCCCCccccCCCcCCCCceEEecCceEECCCCeEEEE
Q 043350 958 IVSTESIILQN-QDTCTLRITNKSAQEKAIFKIICDGQSTVKDDGDASDYRLRGSFGFPRWLEVTPAAGVIKPDSYIEVS 1036 (1133)
Q Consensus 958 ~~~~~~~~~~~-~~~~~~~i~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~p~~~~~~p~~~~~~~ 1036 (1133)
.++...|.|.. .....++|.|++.. +..++.--... .++++. .-.+-|-|+|..-.|+||++-.|.
T Consensus 3 ~i~~trii~~~~~~~~~i~v~N~~~~-~~~vq~~v~~~--~~~~~~----------~~~~~~~vsPp~~~L~pg~~q~vR 69 (122)
T PF00345_consen 3 QISPTRIIFNESQRSASITVTNNSDQ-PYLVQVWVYDQ--DDEDED----------EPTDPFIVSPPIFRLEPGESQTVR 69 (122)
T ss_dssp EESSSEEEEETTSSEEEEEEEESSSS-EEEEEEEEEET--TSTTSS----------SSSSSEEEESSEEEEETTEEEEEE
T ss_pred EEccEEEEEeCCCCEEEEEEEcCCCC-cEEEEEEEEcC--CCcccc----------cccccEEEeCCceEeCCCCcEEEE
Confidence 56667777765 45678999999997 77777643210 001111 011358899999999999999998
Q ss_pred E
Q 043350 1037 V 1037 (1133)
Q Consensus 1037 ~ 1037 (1133)
|
T Consensus 70 v 70 (122)
T PF00345_consen 70 V 70 (122)
T ss_dssp E
T ss_pred E
Confidence 8
No 435
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=57.72 E-value=43 Score=36.06 Aligned_cols=76 Identities=17% Similarity=0.217 Sum_probs=48.9
Q ss_pred eEEEEEeCCCCeEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeec------cCCCCeEEEEEeCCCCEEEEE
Q 043350 158 FLRNIACTDTQLWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYES------ANTSPTMCLMVDCGNRLVWTG 230 (1133)
Q Consensus 158 ~V~~v~s~dg~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~------~h~s~V~~la~spd~~~LaSg 230 (1133)
.+..+.+.+..+++ ..+|.+++||+......+.... .++.... .....|..+.++.+|.-|++-
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~S---------i~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l 84 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVS---------IAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL 84 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCcc---------HHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence 44445555556666 9999999999998544332210 1111111 344578888888888877765
Q ss_pred eCCCeEEEEeCCC
Q 043350 231 HKDGKIRSWKMDQ 243 (1133)
Q Consensus 231 s~Dg~V~vWd~~~ 243 (1133)
+ +|....|+.+-
T Consensus 85 s-ng~~y~y~~~L 96 (219)
T PF07569_consen 85 S-NGDSYSYSPDL 96 (219)
T ss_pred e-CCCEEEecccc
Confidence 5 57888898774
No 436
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=57.55 E-value=3.7e+02 Score=31.46 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=34.3
Q ss_pred CCCCEEEEEECCCC--eEEEEec---CCe-EEEEe--CCCCeeEEEecCCcceeE----EecCCCEEEEEe-----cCCe
Q 043350 438 DTKRTEAMVLTADG--MIWSGCT---NGL-LVQWD--GNGNRVSDILHHQCAVQC----FCTYGSRMYVGY-----VSGY 500 (1133)
Q Consensus 438 h~~~V~sl~~spdg--~L~sgs~---DG~-I~vWd--~~g~~l~~~~~h~~~V~~----fs~dg~~Lasgs-----~DG~ 500 (1133)
...++.-+.|+|.. .|.-|.+ +.. -+||- .+|...+.+..+.....+ |.+||..|+--+ .+..
T Consensus 186 ~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~ 265 (386)
T PF14583_consen 186 DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFW 265 (386)
T ss_dssp ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EE
T ss_pred cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceE
Confidence 45567788899987 5555443 221 35564 466655665555444443 999998665322 3446
Q ss_pred EEEEeCCC
Q 043350 501 LQILDLDG 508 (1133)
Q Consensus 501 I~vwd~~g 508 (1133)
|.-+|+..
T Consensus 266 i~~~d~~t 273 (386)
T PF14583_consen 266 IAGYDPDT 273 (386)
T ss_dssp EEEE-TTT
T ss_pred EEeeCCCC
Confidence 66677663
No 437
>PRK13202 ureB urease subunit beta; Reviewed
Probab=57.11 E-value=26 Score=32.32 Aligned_cols=70 Identities=14% Similarity=0.153 Sum_probs=40.4
Q ss_pred eEEecCeEEeccc--ceEEEEEEECCccc---eEEEEEeecCCCcccCCCCCCccccCCCcCCCCceEEecCce---EEC
Q 043350 957 TIVSTESIILQNQ--DTCTLRITNKSAQE---KAIFKIICDGQSTVKDDGDASDYRLRGSFGFPRWLEVTPAAG---VIK 1028 (1133)
Q Consensus 957 ~~~~~~~~~~~~~--~~~~~~i~n~~~~~---~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~p~~~---~~~ 1028 (1133)
..+..+.|.+... ++..|+++|+|..+ -.+|.|..-.+... =| + ...++ .+..-.+| ..+
T Consensus 6 i~~~~~~I~ln~grr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~-FD------R-~~A~G----~RLdIpaGTavRFE 73 (104)
T PRK13202 6 IFYGSGDIEMNAAALSRLQMRIINAGDRPVQVGSHVHLPQANRALS-FD------R-ATAHG----YRLDIPAATAVRFE 73 (104)
T ss_pred EecCCCCEEeCCCCCceEEEEEEeCCCCceEEccccchhhcCccee-ec------H-hHhcC----cccccCCCCeEEEC
Confidence 4455667777764 57789999999751 23788863221110 00 0 00111 13333333 679
Q ss_pred CCCeEEEEEE
Q 043350 1029 PDSYIEVSVH 1038 (1133)
Q Consensus 1029 p~~~~~~~~~ 1038 (1133)
|||+.+|+|-
T Consensus 74 PG~~k~V~LV 83 (104)
T PRK13202 74 PGIPQIVGLV 83 (104)
T ss_pred CCCeEEEEEE
Confidence 9999999887
No 438
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=53.43 E-value=4.4e+02 Score=31.06 Aligned_cols=110 Identities=14% Similarity=0.165 Sum_probs=61.2
Q ss_pred EEEEE-eCCCCeEE---ecCC----cEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEE
Q 043350 159 LRNIA-CTDTQLWA---GQEC----GVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTG 230 (1133)
Q Consensus 159 V~~v~-s~dg~lla---s~Dg----~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSg 230 (1133)
+..+. +|+|+++| +..| .++++|+.+....- ..+... .-..+.|.++++.|+-.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~---------------d~i~~~---~~~~~~W~~d~~~~~y~ 187 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP---------------DGIENP---KFSSVSWSDDGKGFFYT 187 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE---------------EEEEEE---ESEEEEECTTSSEEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC---------------Cccccc---ccceEEEeCCCCEEEEE
Confidence 33455 89999999 3444 59999998742110 001111 12238999998877655
Q ss_pred eCCC-----------eEEEEeCCCCCCCCCCCcccccccccCCCC--eEEEEEeeCCc--EEEEeCCCc---EEEEeCCC
Q 043350 231 HKDG-----------KIRSWKMDQTLDDANNPFKEGLSWQAHRGP--VLAMIFSSQGD--LWSGGEGGV---IKIWPWES 292 (1133)
Q Consensus 231 s~Dg-----------~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~--V~sl~fsp~g~--L~Sgs~Dgt---I~iWdl~~ 292 (1133)
..+. .|+.|++.+... .....+...... ...+..+++++ +++.+...+ +.+-++..
T Consensus 188 ~~~~~~~~~~~~~~~~v~~~~~gt~~~------~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 188 RFDEDQRTSDSGYPRQVYRHKLGTPQS------EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp ECSTTTSS-CCGCCEEEEEEETTS-GG------G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred EeCcccccccCCCCcEEEEEECCCChH------hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 5433 377788775221 212344443333 56888899999 444444433 55556654
No 439
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=50.83 E-value=2.6e+02 Score=31.70 Aligned_cols=100 Identities=16% Similarity=0.267 Sum_probs=50.7
Q ss_pred CCEEEEEECCCC-eEEEEecCCeEEEEeCCCCeeEEEe-cCCcceeE--EecCCCEEEEEecCCeEEEEeCCCCcceeee
Q 043350 440 KRTEAMVLTADG-MIWSGCTNGLLVQWDGNGNRVSDIL-HHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGNLTASWI 515 (1133)
Q Consensus 440 ~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g~~l~~~~-~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~~l~~~~ 515 (1133)
..+..+..+++| +++++..-....-|+.-...-.... ..+..|.. |.+++...++ ...|.|+.=+.. .-..+|.
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~-~~~~~w~ 222 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDP-DDGETWS 222 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-T-TEEEEE-
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCC-CCccccc
Confidence 456677788899 6666655444556776322222222 24567777 8999775554 478888887722 1223333
Q ss_pred cc-------ccCeEEeeec-ccceeeecccCCee
Q 043350 516 AH-------SSPVLKLAVG-VDHIYSLAAHGGIR 541 (1133)
Q Consensus 516 ~H-------~~~V~~l~fs-~~~L~S~s~Dg~I~ 541 (1133)
.+ .-.+..+++. ...++.++..|++.
T Consensus 223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~ 256 (302)
T PF14870_consen 223 EPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL 256 (302)
T ss_dssp --B-TTSS--S-EEEEEESSSS-EEEEESTT-EE
T ss_pred cccCCcccCceeeEEEEecCCCCEEEEeCCccEE
Confidence 32 2237888888 66666666666554
No 440
>PRK13616 lipoprotein LpqB; Provisional
Probab=50.78 E-value=83 Score=39.27 Aligned_cols=97 Identities=15% Similarity=0.115 Sum_probs=53.8
Q ss_pred CEEEEEECCCC-eEEEEe------cCC--eEEEEeCCCCeeEEEecCCcceeE--EecCCCEEEEEecC-----------
Q 043350 441 RTEAMVLTADG-MIWSGC------TNG--LLVQWDGNGNRVSDILHHQCAVQC--FCTYGSRMYVGYVS----------- 498 (1133)
Q Consensus 441 ~V~sl~~spdg-~L~sgs------~DG--~I~vWd~~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~D----------- 498 (1133)
.+.+.+++|+| .++..- .|. .|.+++..+....-..+. ..++ |+|||+.|++....
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 46677788888 444433 244 455555544332222222 2444 99999988877532
Q ss_pred -CeEEEEeCCCCcceeeeccccCeEEeeec--ccceeeecccCCeee
Q 043350 499 -GYLQILDLDGNLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRG 542 (1133)
Q Consensus 499 -G~I~vwd~~g~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~l 542 (1133)
+.+.+.++++..... ...+.|.++.|+ |.+|+-.. +|.|.+
T Consensus 429 ~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 429 TGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred CceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 233333444322221 335679999998 77776655 354444
No 441
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=50.29 E-value=35 Score=26.40 Aligned_cols=30 Identities=33% Similarity=0.362 Sum_probs=23.7
Q ss_pred CCeEEEEEeeC-C--c-EEEEeCCCcEEEEeCCC
Q 043350 263 GPVLAMIFSSQ-G--D-LWSGGEGGVIKIWPWES 292 (1133)
Q Consensus 263 ~~V~sl~fsp~-g--~-L~Sgs~DgtI~iWdl~~ 292 (1133)
+.|.++.|+|. + + |+-+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 47899999974 4 4 66666778999999984
No 442
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=49.90 E-value=4.9e+02 Score=30.62 Aligned_cols=71 Identities=18% Similarity=0.112 Sum_probs=39.6
Q ss_pred EEEEEECCCCeEEEEecCCe--EEEEeCC-CCeeEEEecC-CcceeEEe--cCCCEEE--EEe--cCCeEEEEeCCCCcc
Q 043350 442 TEAMVLTADGMIWSGCTNGL--LVQWDGN-GNRVSDILHH-QCAVQCFC--TYGSRMY--VGY--VSGYLQILDLDGNLT 511 (1133)
Q Consensus 442 V~sl~~spdg~L~sgs~DG~--I~vWd~~-g~~l~~~~~h-~~~V~~fs--~dg~~La--sgs--~DG~I~vwd~~g~~l 511 (1133)
+..+....+.+++..-.++. |+++++. +.....+... .+.|..++ ++++.+. ..| .-++|+.||+....+
T Consensus 329 l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 329 LEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 44444444446666666664 7788888 7666666552 33344444 3444332 222 456888888875443
Q ss_pred e
Q 043350 512 A 512 (1133)
Q Consensus 512 ~ 512 (1133)
.
T Consensus 409 ~ 409 (414)
T PF02897_consen 409 T 409 (414)
T ss_dssp E
T ss_pred E
Confidence 3
No 443
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=48.92 E-value=4.4e+02 Score=29.78 Aligned_cols=75 Identities=13% Similarity=0.200 Sum_probs=50.6
Q ss_pred eEEEEecCCeEEEEeCCCCeeEEEecCCcceeE-----Ee------cCCCEEEEEecCCeEEEEeCC-CCcceeeeccc-
Q 043350 452 MIWSGCTNGLLVQWDGNGNRVSDILHHQCAVQC-----FC------TYGSRMYVGYVSGYLQILDLD-GNLTASWIAHS- 518 (1133)
Q Consensus 452 ~L~sgs~DG~I~vWd~~g~~l~~~~~h~~~V~~-----fs------~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~H~- 518 (1133)
.=+.|..-|.|-+||.+|+.++.+.. ....++ +. ..|.+|+---.||+|.+||.. |+.+..+..-.
T Consensus 214 d~v~G~G~G~VdvFd~~G~l~~r~as-~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G 292 (336)
T TIGR03118 214 DEVAGAGLGYVNVFTLNGQLLRRVAS-SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDN 292 (336)
T ss_pred ccccCCCcceEEEEcCCCcEEEEecc-CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCC
Confidence 33455566899999999999998843 333332 22 235666666689999999975 66666655433
Q ss_pred -----cCeEEeeec
Q 043350 519 -----SPVLKLAVG 527 (1133)
Q Consensus 519 -----~~V~~l~fs 527 (1133)
+..+.|+|.
T Consensus 293 ~pi~i~GLWgL~fG 306 (336)
T TIGR03118 293 HPVKVDGLWSLTFG 306 (336)
T ss_pred CeEEecCeEEeeeC
Confidence 346778876
No 444
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=47.81 E-value=4 Score=47.55 Aligned_cols=139 Identities=16% Similarity=0.195 Sum_probs=88.8
Q ss_pred CCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE---ecCCcEEEeeCCCCCC
Q 043350 112 QPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA---GQECGVRFWNLEDSYE 187 (1133)
Q Consensus 112 ~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla---s~Dg~VrvWdl~~~~~ 187 (1133)
.|.+.-++.++.+.++..+|.. ++. ..++... + ..-+++ -.++..++ -..+.+.+|++...+.
T Consensus 43 ~~e~~nlavaca~tiv~~YD~a----gq~-~le~n~t-g-------~aldm~wDkegdvlavlAek~~piylwd~n~eyt 109 (615)
T KOG2247|consen 43 RPEGHNLAVACANTIVIYYDKA----GQV-ILELNPT-G-------KALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT 109 (615)
T ss_pred ecCCCceehhhhhhHHHhhhhh----cce-ecccCCc-h-------hHhhhhhccccchhhhhhhcCCCeeechhhhhhH
Confidence 3444458889999999999987 544 3333221 1 122333 33555444 6678999999987332
Q ss_pred cCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEE
Q 043350 188 PGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLA 267 (1133)
Q Consensus 188 ~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~s 267 (1133)
.. ...+..+.-.-+.|++....++.|-..|.+.|++.... +.+...-.|...+++
T Consensus 110 qq-----------------LE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgts--------R~iiv~Gkh~RRgtq 164 (615)
T KOG2247|consen 110 QQ-----------------LESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTS--------RRIIVMGKHQRRGTQ 164 (615)
T ss_pred HH-----------------HhccCcchHHHHhhccCCccccccccccceEEEeccch--------hhhhhhcccccceeE
Confidence 11 01111111112567778888888888999999998761 223333449999999
Q ss_pred EEEeeCCcEEEEeCCCcEEEE
Q 043350 268 MIFSSQGDLWSGGEGGVIKIW 288 (1133)
Q Consensus 268 l~fsp~g~L~Sgs~DgtI~iW 288 (1133)
+++.+.+..+.++.|.++.+-
T Consensus 165 ~av~lEd~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 165 IAVTLEDYVILCDCDNTLSVT 185 (615)
T ss_pred EEecccceeeecCcHHHHHHh
Confidence 999998888888888776543
No 445
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=47.79 E-value=4.1e+02 Score=29.12 Aligned_cols=72 Identities=13% Similarity=0.034 Sum_probs=43.0
Q ss_pred CeEEEEEeCCCCEEEEEe---CCCeEEEEeCCCCCCC-CCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcE
Q 043350 214 PTMCLMVDCGNRLVWTGH---KDGKIRSWKMDQTLDD-ANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVI 285 (1133)
Q Consensus 214 ~V~~la~spd~~~LaSgs---~Dg~V~vWd~~~~~~~-~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI 285 (1133)
.|..+.+||||..+|.-. .++.|.|=-+...... .................|.+++|.+++. +++...++.+
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~ 190 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPV 190 (253)
T ss_pred ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCce
Confidence 899999999999987766 3467777665432211 0000011122223357899999999998 3333344433
No 446
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=47.60 E-value=55 Score=30.22 Aligned_cols=69 Identities=19% Similarity=0.303 Sum_probs=39.9
Q ss_pred eEEecCeEEecc-cceEEEEEEECCccc---eEEEEEeecCCCcccCCCCCCccccCC-CcCCCCceEEecCce---EEC
Q 043350 957 TIVSTESIILQN-QDTCTLRITNKSAQE---KAIFKIICDGQSTVKDDGDASDYRLRG-SFGFPRWLEVTPAAG---VIK 1028 (1133)
Q Consensus 957 ~~~~~~~~~~~~-~~~~~~~i~n~~~~~---~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~wl~~~p~~~---~~~ 1028 (1133)
..+..+.|.+.. .+...|+++|+|..+ -.+|.|..-.+.. +- .|. .++ .+..-.+| ..+
T Consensus 6 i~~~~~~I~lN~gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL---~F------DR~~A~G----~RLdIpaGTavRFE 72 (101)
T cd00407 6 IILKEGDIELNAGREAVTLKVKNTGDRPIQVGSHYHFFEVNPAL---KF------DREKAYG----MRLDIPAGTAVRFE 72 (101)
T ss_pred EEeCCCCeEeCCCCCEEEEEEEeCCCcceEEccccchhhcCccc---cc------cHHHccc----ceecccCCCeEEEC
Confidence 344556677654 456789999999751 2378886322111 00 011 111 23333334 689
Q ss_pred CCCeEEEEEE
Q 043350 1029 PDSYIEVSVH 1038 (1133)
Q Consensus 1029 p~~~~~~~~~ 1038 (1133)
|||+.+|+|-
T Consensus 73 PG~~k~V~LV 82 (101)
T cd00407 73 PGEEKEVELV 82 (101)
T ss_pred CCCeEEEEEE
Confidence 9999999987
No 447
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=46.46 E-value=51 Score=30.35 Aligned_cols=70 Identities=16% Similarity=0.283 Sum_probs=39.5
Q ss_pred eEEecCeEEecc-cceEEEEEEECCccc---eEEEEEeecCCCcccCCCCCCccccCCCcCCCCceEEecCce---EECC
Q 043350 957 TIVSTESIILQN-QDTCTLRITNKSAQE---KAIFKIICDGQSTVKDDGDASDYRLRGSFGFPRWLEVTPAAG---VIKP 1029 (1133)
Q Consensus 957 ~~~~~~~~~~~~-~~~~~~~i~n~~~~~---~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~p~~~---~~~p 1029 (1133)
..+..+.|.+.. .+...|+++|+|..+ -.+|.|..-.+... =| + ...++ .+..-.+| ..+|
T Consensus 6 i~~~~~~I~ln~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~-FD------R-~~A~G----~RLdIpaGTavRFEP 73 (101)
T TIGR00192 6 LQLAEGDITINEGRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALD-FD------R-ELAFG----MRLDIPSGTAVRFEP 73 (101)
T ss_pred EecCCCCEEeCCCCcEEEEEEEeCCCcceEEccccchhhcCccee-ec------H-hhhcC----cccccCCCCeEeECC
Confidence 344556676654 456789999999751 23788763211110 00 0 00111 13333333 6899
Q ss_pred CCeEEEEEE
Q 043350 1030 DSYIEVSVH 1038 (1133)
Q Consensus 1030 ~~~~~~~~~ 1038 (1133)
|++.+|+|-
T Consensus 74 G~~k~V~LV 82 (101)
T TIGR00192 74 GEEKSVELV 82 (101)
T ss_pred CCeEEEEEE
Confidence 999999987
No 448
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.64 E-value=2.2e+02 Score=34.23 Aligned_cols=124 Identities=8% Similarity=-0.028 Sum_probs=71.5
Q ss_pred EEEecCCceEEEecCCCceeEeecC---CCc------eeEEEecCCc---ceeEEEeCCCCCccccccceEEEEeeCCCC
Q 043350 337 CMLSDHARARVWCAQPLSFSLWDAR---SKE------LLKVFNIEGH---IENRVDTQSVQDQPVEDEMKVKFVSSNKKE 404 (1133)
Q Consensus 337 ~l~S~d~~i~vwss~d~~I~lWD~~---tg~------~l~~~~~h~~---~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg 404 (1133)
+++..+..+..|.+.|..+.+-.++ .+. ..+++..... .|..+..++.|.. ++-.+.+|
T Consensus 55 ~~~~~gD~lf~Wd~~ds~Llv~~lR~~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~---------VaL~G~~G 125 (741)
T KOG4460|consen 55 VVFGLGDELFLWDGEDSSLLVVRLRGPSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSH---------VALIGIKG 125 (741)
T ss_pred hhcccCCEEEEEecCcceEEEEEeccCCCCcccccccccceeccCCcceEEEEEEEecCCCce---------EEEecCCe
Confidence 3444444788888888887776666 111 1122222222 3668888999998 88888888
Q ss_pred ccccccccc---cceeeccCCceEEEEEecCCccc--CCCCCEEEEEECCCC----eEEEEecCCeEEEEeCCC
Q 043350 405 KPHGFLQRS---RNAIMGAADAVRRVATRGAGAFV--DDTKRTEAMVLTADG----MIWSGCTNGLLVQWDGNG 469 (1133)
Q Consensus 405 ~i~~~~~~~---~~~~~~~~~~V~~v~~~p~g~~~--~h~~~V~sl~~spdg----~L~sgs~DG~I~vWd~~g 469 (1133)
.+.....+. -..+......|.+-.+.-+.++- ...-.+..++|+|+. .|..-..|.+|++||.+.
T Consensus 126 i~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 126 LMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSE 199 (741)
T ss_pred eEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEecCcEEEEEecCC
Confidence 776222111 11223333334444443222221 112235566777765 777888999999999843
No 449
>PRK13203 ureB urease subunit beta; Reviewed
Probab=45.47 E-value=50 Score=30.47 Aligned_cols=70 Identities=21% Similarity=0.296 Sum_probs=39.6
Q ss_pred eEEecCeEEecc-cceEEEEEEECCccc---eEEEEEeecCCCcccCCCCCCccccCCCcCCCCceEEecCce---EECC
Q 043350 957 TIVSTESIILQN-QDTCTLRITNKSAQE---KAIFKIICDGQSTVKDDGDASDYRLRGSFGFPRWLEVTPAAG---VIKP 1029 (1133)
Q Consensus 957 ~~~~~~~~~~~~-~~~~~~~i~n~~~~~---~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~p~~~---~~~p 1029 (1133)
..+..+.|.+.. .+...|+++|+|..+ -.+|.|..-.+... =| + ...++ .+..-.+| ..+|
T Consensus 6 ~~~~~~~I~ln~gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~-FD------R-~~A~G----~RLdIpaGTavRFEP 73 (102)
T PRK13203 6 YITADGEIELNAGRETVTLTVANTGDRPIQVGSHYHFFEVNPALS-FD------R-EAARG----MRLNIPAGTAVRFEP 73 (102)
T ss_pred EecCCCCEEeCCCCCEEEEEEEeCCCCceEEccccchhhcCcchh-cc------H-hhhcC----cccccCCCCeEeECC
Confidence 344556666654 456789999999751 23788863221110 00 0 00111 23333334 6899
Q ss_pred CCeEEEEEE
Q 043350 1030 DSYIEVSVH 1038 (1133)
Q Consensus 1030 ~~~~~~~~~ 1038 (1133)
||+.+|+|-
T Consensus 74 G~~k~V~LV 82 (102)
T PRK13203 74 GQTREVELV 82 (102)
T ss_pred CCeEEEEEE
Confidence 999999887
No 450
>PHA02713 hypothetical protein; Provisional
Probab=45.07 E-value=3.3e+02 Score=33.87 Aligned_cols=78 Identities=6% Similarity=-0.043 Sum_probs=40.0
Q ss_pred eEEEEeCCCCeeEEEec---CCcceeEEecCCCEEEEEecC------CeEEEEeCCC-Cc---ceeeeccccCeEEeeec
Q 043350 461 LLVQWDGNGNRVSDILH---HQCAVQCFCTYGSRMYVGYVS------GYLQILDLDG-NL---TASWIAHSSPVLKLAVG 527 (1133)
Q Consensus 461 ~I~vWd~~g~~l~~~~~---h~~~V~~fs~dg~~Lasgs~D------G~I~vwd~~g-~~---l~~~~~H~~~V~~l~fs 527 (1133)
.+..||...+.-..+.. .........-+|+..+.|+.+ ..|..||.+. +. +..+.........+++.
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~ 512 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHD 512 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEEC
Confidence 46677775433322221 111111144566666667654 2467888765 32 22232333333444455
Q ss_pred ccceeeecccC
Q 043350 528 VDHIYSLAAHG 538 (1133)
Q Consensus 528 ~~~L~S~s~Dg 538 (1133)
+...+.||.||
T Consensus 513 ~~iyv~Gg~~~ 523 (557)
T PHA02713 513 NTIMMLHCYES 523 (557)
T ss_pred CEEEEEeeecc
Confidence 77778888887
No 451
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.94 E-value=48 Score=42.96 Aligned_cols=71 Identities=14% Similarity=0.016 Sum_probs=51.9
Q ss_pred CeEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCC
Q 043350 214 PTMCLMVDCG-NRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWE 291 (1133)
Q Consensus 214 ~V~~la~spd-~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~ 291 (1133)
-+.|+.|+|. -...+.+..|+.|+|..+.... ..+.. ..-...+++++|+|.|. |+.|-..|++.-|...
T Consensus 157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~-------~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLA-------QNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred ccccccccCCccchhhhhccccchhhhhhhhhh-------hhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecc
Confidence 4678899984 3345777889999998876411 11111 22356789999999999 9999999999988765
Q ss_pred C
Q 043350 292 S 292 (1133)
Q Consensus 292 ~ 292 (1133)
-
T Consensus 229 l 229 (1405)
T KOG3630|consen 229 L 229 (1405)
T ss_pred c
Confidence 4
No 452
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=43.28 E-value=96 Score=28.48 Aligned_cols=71 Identities=21% Similarity=0.257 Sum_probs=41.9
Q ss_pred ceEEecCeEEecc-cceEEEEEEECCccc---eEEEEEeecCCCcccCCCCCCccccCCCcCCCCceEEecCce---EEC
Q 043350 956 ETIVSTESIILQN-QDTCTLRITNKSAQE---KAIFKIICDGQSTVKDDGDASDYRLRGSFGFPRWLEVTPAAG---VIK 1028 (1133)
Q Consensus 956 ~~~~~~~~~~~~~-~~~~~~~i~n~~~~~---~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~p~~~---~~~ 1028 (1133)
+.++..++|.+.. ..++.++++|||..+ -.+|.|..-..... =| |. ...=++..-.+| ..+
T Consensus 5 e~~~~~g~IelN~gr~~~~i~V~NtGDRPIQVGSHfHF~EvN~aL~-FD--------R~---~a~G~RLdIpagTAVRFE 72 (106)
T COG0832 5 EIILASGDIELNAGRPTVTIEVANTGDRPIQVGSHFHFFEVNRALS-FD--------RE---KAYGMRLDIPAGTAVRFE 72 (106)
T ss_pred eeEecCccEEEeCCCcceEEEEeecCCCceEeecceeehhhCccee-ec--------hh---hhcceEecccCCceEeeC
Confidence 3456677788754 457789999999751 24788863211110 00 00 011224443444 679
Q ss_pred CCCeEEEEEE
Q 043350 1029 PDSYIEVSVH 1038 (1133)
Q Consensus 1029 p~~~~~~~~~ 1038 (1133)
||+.-+|+|-
T Consensus 73 PG~~k~V~LV 82 (106)
T COG0832 73 PGDEKEVELV 82 (106)
T ss_pred CCCccEEEEE
Confidence 9999999987
No 453
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=41.97 E-value=2.9e+02 Score=27.22 Aligned_cols=91 Identities=12% Similarity=0.156 Sum_probs=55.8
Q ss_pred eEEEEecCCeEEEEeCCC---------CeeEEEecCCcceeE-----Eec--CCCEEEEEecCCeEEEEeCCCCcceeee
Q 043350 452 MIWSGCTNGLLVQWDGNG---------NRVSDILHHQCAVQC-----FCT--YGSRMYVGYVSGYLQILDLDGNLTASWI 515 (1133)
Q Consensus 452 ~L~sgs~DG~I~vWd~~g---------~~l~~~~~h~~~V~~-----fs~--dg~~Lasgs~DG~I~vwd~~g~~l~~~~ 515 (1133)
.|+.+..-|+|.|.+... ..+..+.- ...|+| |.+ ..+.|+.|+. ..+..||+..+.-.-++
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-n~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~Fyk 89 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-NQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLFYK 89 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEEC-CCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhhhh
Confidence 678888889999997632 12233332 344555 433 3457888875 46899999865433344
Q ss_pred ccccCeEEeeec-----ccceeeecccCCeeecc
Q 043350 516 AHSSPVLKLAVG-----VDHIYSLAAHGGIRGWT 544 (1133)
Q Consensus 516 ~H~~~V~~l~fs-----~~~L~S~s~Dg~I~lW~ 544 (1133)
--.+.|.++.+. ..-|+-.+.+..|..+|
T Consensus 90 e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd 123 (136)
T PF14781_consen 90 EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFD 123 (136)
T ss_pred hCccceeEEEEEecCCCCCcEEEECceEEEEEeC
Confidence 455777887775 33455555555666555
No 454
>PRK13198 ureB urease subunit beta; Reviewed
Probab=41.35 E-value=71 Score=31.67 Aligned_cols=71 Identities=13% Similarity=0.252 Sum_probs=41.8
Q ss_pred ceEEecCeEEeccc-ceEEEEEEECCccc---eEEEEEeecCCCcccCCCCCCccccCCCcCCCCceEEecCce---EEC
Q 043350 956 ETIVSTESIILQNQ-DTCTLRITNKSAQE---KAIFKIICDGQSTVKDDGDASDYRLRGSFGFPRWLEVTPAAG---VIK 1028 (1133)
Q Consensus 956 ~~~~~~~~~~~~~~-~~~~~~i~n~~~~~---~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~p~~~---~~~ 1028 (1133)
+.++..+.|.+... ....|+++|+|..+ -.+|.|..-..... =| + ...++ .+..-.+| ..+
T Consensus 33 ei~~~~g~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~-FD------R-~~A~G----~RLdIPAGTAVRFE 100 (158)
T PRK13198 33 GLVLAETPITFNENKPVTKVKVRNTGDRPIQVGSHFHFFEVNRALE-FD------R-AAAYG----KRLNISSTTAIRFE 100 (158)
T ss_pred eEEeCCCCeEeCCCCcEEEEEEEeCCCCceEeccccchhhcCcccc-cc------H-hhhcC----cccccCCCCeEeeC
Confidence 45666677887654 56789999999751 24788863221110 00 0 00111 23333334 689
Q ss_pred CCCeEEEEEE
Q 043350 1029 PDSYIEVSVH 1038 (1133)
Q Consensus 1029 p~~~~~~~~~ 1038 (1133)
||++.+|+|-
T Consensus 101 PG~~k~V~LV 110 (158)
T PRK13198 101 PGDETEVPLI 110 (158)
T ss_pred CCCeeEEEEE
Confidence 9999999987
No 455
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=41.03 E-value=1.2e+02 Score=31.16 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=23.4
Q ss_pred CeEEEEEeeCC-----c--EEEEeCCCcEEEEeCC
Q 043350 264 PVLAMIFSSQG-----D--LWSGGEGGVIKIWPWE 291 (1133)
Q Consensus 264 ~V~sl~fsp~g-----~--L~Sgs~DgtI~iWdl~ 291 (1133)
.|.+++|||.| . |+....++.|.||...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 78999999953 3 8888999999999764
No 456
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.58 E-value=2.3e+02 Score=33.43 Aligned_cols=108 Identities=9% Similarity=0.132 Sum_probs=67.6
Q ss_pred CCCCeEEecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q 043350 165 TDTQLWAGQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQT 244 (1133)
Q Consensus 165 ~dg~llas~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~ 244 (1133)
.+.++++-..|.+.=|...+.. .+..+..-....++|.++.|++|++.||.--.|++|-+.+..+.
T Consensus 33 aNkqlfavrSggatgvvvkgpn--------------dDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d 98 (657)
T KOG2377|consen 33 ANKQLFAVRSGGATGVVVKGPN--------------DDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPD 98 (657)
T ss_pred CcceEEEEecCCeeEEEEeCCC--------------CCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCC
Confidence 4556666556666666655421 12223333345679999999999999999999999999998651
Q ss_pred CCCCCCCcccccccccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCC
Q 043350 245 LDDANNPFKEGLSWQAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWE 291 (1133)
Q Consensus 245 ~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~ 291 (1133)
.. .....++.+.-+..|.+..|+..-.++-.+..| +-+|-+.
T Consensus 99 ~~----~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 99 NS----QLEYTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVL 140 (657)
T ss_pred ch----hhHHHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEc
Confidence 11 112222334446668899998764455444443 4455443
No 457
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=40.23 E-value=2e+02 Score=30.96 Aligned_cols=94 Identities=15% Similarity=0.160 Sum_probs=61.5
Q ss_pred EEEECCCC--eEEEEecCCeEEEEeC---CC-----CeeEEEecC---Ccc---eeEEecCCCEEEEEecCCeEEEEeCC
Q 043350 444 AMVLTADG--MIWSGCTNGLLVQWDG---NG-----NRVSDILHH---QCA---VQCFCTYGSRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 444 sl~~spdg--~L~sgs~DG~I~vWd~---~g-----~~l~~~~~h---~~~---V~~fs~dg~~Lasgs~DG~I~vwd~~ 507 (1133)
.++|+.+. +.++-+.+-.|.-||. .| +.+..+... ... =.|+...|.+.++....|+|...|..
T Consensus 162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~ 241 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPT 241 (310)
T ss_pred cccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCC
Confidence 45566565 5566677788888884 23 223333221 011 12355667777777788899999986
Q ss_pred -CCcceeeeccccCeEEeeeccc----ceeeeccc
Q 043350 508 -GNLTASWIAHSSPVLKLAVGVD----HIYSLAAH 537 (1133)
Q Consensus 508 -g~~l~~~~~H~~~V~~l~fs~~----~L~S~s~D 537 (1133)
|+.+.+++-....|++++|.|. +.+|+..+
T Consensus 242 tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa~ 276 (310)
T KOG4499|consen 242 TGKILLEIKLPTPQITSCCFGGKNLDILYVTTAAK 276 (310)
T ss_pred CCcEEEEEEcCCCceEEEEecCCCccEEEEEehhc
Confidence 7889999888999999999944 34455544
No 458
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.07 E-value=4.7e+02 Score=34.96 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=26.3
Q ss_pred CeEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q 043350 214 PTMCLMVDCGNRLVWTGHKDGKIRSWKMDQ 243 (1133)
Q Consensus 214 ~V~~la~spd~~~LaSgs~Dg~V~vWd~~~ 243 (1133)
....++|+|..+++|.|..+|.|+++-...
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccc
Confidence 456788999999999999999999998765
No 459
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.54 E-value=2.5e+02 Score=36.94 Aligned_cols=93 Identities=9% Similarity=-0.004 Sum_probs=61.8
Q ss_pred EEEEEECCCC--eEEEEecCCeEEEEeCCC--CeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCCCcceeee
Q 043350 442 TEAMVLTADG--MIWSGCTNGLLVQWDGNG--NRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGNLTASWI 515 (1133)
Q Consensus 442 V~sl~~spdg--~L~sgs~DG~I~vWd~~g--~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~~l~~~~ 515 (1133)
..++.+.|.- ..+....|+.|.+..++- .....+.. ...++| |+|.|+.|++|-..|++.-|.-..+....+.
T Consensus 158 ~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~-t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip 236 (1405)
T KOG3630|consen 158 QLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPV-TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIP 236 (1405)
T ss_pred cccccccCCccchhhhhccccchhhhhhhhhhhhhcccCc-ccceeeEEeccccceeeEecCCCeEEEeecccceeeccc
Confidence 3445565554 677778899999887733 22333222 233444 9999999999999999999987765433333
Q ss_pred cc----ccCeEEeeec--ccceeeec
Q 043350 516 AH----SSPVLKLAVG--VDHIYSLA 535 (1133)
Q Consensus 516 ~H----~~~V~~l~fs--~~~L~S~s 535 (1133)
.- ...|.+|.|- ..+|+..+
T Consensus 237 ~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 237 EPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred CCCcCCCcceeEEEEecceeEEEEec
Confidence 21 4678999998 44555544
No 460
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=39.45 E-value=1.1e+03 Score=31.86 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=16.0
Q ss_pred EEEEE-eC-CCCeEEecCCcEEEeeCCC
Q 043350 159 LRNIA-CT-DTQLWAGQECGVRFWNLED 184 (1133)
Q Consensus 159 V~~v~-s~-dg~llas~Dg~VrvWdl~~ 184 (1133)
-.-++ +| +|.+.+|.-.+=+||.+..
T Consensus 409 ~Yy~AvsPvdgtlyvSdp~s~qv~rv~s 436 (1899)
T KOG4659|consen 409 SYYIAVSPVDGTLYVSDPLSKQVWRVSS 436 (1899)
T ss_pred eeEEEecCcCceEEecCCCcceEEEecc
Confidence 34445 55 6666666666667777665
No 461
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=39.08 E-value=4.5e+02 Score=32.11 Aligned_cols=153 Identities=15% Similarity=0.212 Sum_probs=76.2
Q ss_pred CCCeEEEEEeeCCcEEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEec
Q 043350 262 RGPVLAMIFSSQGDLWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSD 341 (1133)
Q Consensus 262 ~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~ 341 (1133)
..+|..+.+.-.|.|+.|+.||..++ |..++ +.+...+. +....+.....
T Consensus 164 d~~V~aLv~D~~g~lWvgT~dGL~~f-d~~~g-kalql~s~----------------------------~~dk~I~al~~ 213 (671)
T COG3292 164 DTPVVALVFDANGRLWVGTPDGLSYF-DAGRG-KALQLASP----------------------------PLDKAINALIA 213 (671)
T ss_pred CccceeeeeeccCcEEEecCCcceEE-ccccc-eEEEcCCC----------------------------cchhhHHHHHH
Confidence 56788999988888999999996543 33221 11111000 11111222333
Q ss_pred CCceEEEecCCCceeEeecCCCceeEEEe-cCCcceeEEEeCCCCCccccccceEEEEeeCCCCccc-cccccccceeec
Q 043350 342 HARARVWCAQPLSFSLWDARSKELLKVFN-IEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPH-GFLQRSRNAIMG 419 (1133)
Q Consensus 342 d~~i~vwss~d~~I~lWD~~tg~~l~~~~-~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~-~~~~~~~~~~~~ 419 (1133)
|-...+|-+++..+.+.+.+..+...-.. .....|..+.-..++ . +..|+..|..+ ....+.++..
T Consensus 214 d~qg~LWVGTdqGv~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG-~---------lWiGTenGl~r~~l~rq~Lq~~-- 281 (671)
T COG3292 214 DVQGRLWVGTDQGVYLQEAEGWRASNWGPMLPSGNILLLVQDAQG-E---------LWIGTENGLWRTRLPRQGLQIP-- 281 (671)
T ss_pred HhcCcEEEEeccceEEEchhhccccccCCCCcchheeeeecccCC-C---------EEEeecccceeEecCCCCcccc--
Confidence 45566777777778777766522221111 112223333322333 2 55666665553 1111111100
Q ss_pred cCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeCC
Q 043350 420 AADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGN 468 (1133)
Q Consensus 420 ~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~ 468 (1133)
.....-....|.++....+|.|+++..+|.+++-+.+
T Consensus 282 ------------~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~ 318 (671)
T COG3292 282 ------------LSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTAD 318 (671)
T ss_pred ------------ccccCCccccccceeeccCCCEeeeccCceEEEecch
Confidence 0001112234666767778889999988877765544
No 462
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=38.36 E-value=4.2e+02 Score=33.05 Aligned_cols=89 Identities=16% Similarity=0.066 Sum_probs=46.8
Q ss_pred CC-eEEEEecCCe-----EEEEeCCCCeeEEEecCCcceeE---EecCCCEEEEEecCC------eEEEEeCCCCc---c
Q 043350 450 DG-MIWSGCTNGL-----LVQWDGNGNRVSDILHHQCAVQC---FCTYGSRMYVGYVSG------YLQILDLDGNL---T 511 (1133)
Q Consensus 450 dg-~L~sgs~DG~-----I~vWd~~g~~l~~~~~h~~~V~~---fs~dg~~Lasgs~DG------~I~vwd~~g~~---l 511 (1133)
+| ..+.|+.||. |-.||...+.-...........+ ..-+|...++|+.++ +|..||...+. +
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~ 459 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI 459 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec
Confidence 56 7778888865 67777765444333322222222 555777778888554 56677765431 1
Q ss_pred eeeeccccCeEEeeecccceeeecccC
Q 043350 512 ASWIAHSSPVLKLAVGVDHIYSLAAHG 538 (1133)
Q Consensus 512 ~~~~~H~~~V~~l~fs~~~L~S~s~Dg 538 (1133)
..+..-.........++...+.||.|+
T Consensus 460 ~~M~~~R~~~g~a~~~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 460 APMNTRRSGFGVAVLNGKIYVVGGFDG 486 (571)
T ss_pred CCcccccccceEEEECCEEEEECCccC
Confidence 111111111112223366666667676
No 463
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=37.49 E-value=6.4e+02 Score=29.31 Aligned_cols=19 Identities=11% Similarity=-0.039 Sum_probs=13.8
Q ss_pred CCeEEEEEeCCCCEEEEEe
Q 043350 213 SPTMCLMVDCGNRLVWTGH 231 (1133)
Q Consensus 213 s~V~~la~spd~~~LaSgs 231 (1133)
.....++|.|||.+.++-+
T Consensus 124 ~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 124 HSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred ccccCceECCCCCEEEecc
Confidence 3467889999988766544
No 464
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.67 E-value=14 Score=42.21 Aligned_cols=53 Identities=28% Similarity=0.406 Sum_probs=31.4
Q ss_pred CCCCccEEEEEccCCccccCCChHHHHHhhccCChhHhhccchhHHHHHcCCcccCcccccccCCCCccccC
Q 043350 779 DLAEADMVIFFGDFNYRLFGISYDEARDFVSQRCFDWLREKDQLRAEMKAGKVFQGMREAIIRFPPTYKFER 850 (1133)
Q Consensus 779 ~~~~~d~~f~~GDlNyRi~~~~~~~~~~~~~~~~~~~Ll~~DqL~~~~~~~~~f~g~~E~~i~F~PTYK~~~ 850 (1133)
.|..++.|||=||||||==. . ..+| +..+ .-..++.||.=.+|.=+=|-|=|+
T Consensus 348 ~L~~S~LvIFKGDLNYRKL~--G--------D~~W----~~Tt-----~F~t~Lrgf~p~n~caLRTiKadv 400 (434)
T KOG3870|consen 348 DLQKSSLVIFKGDLNYRKLT--G--------DRKW----DPTT-----PFSTALRGFAPSNICALRTIKADV 400 (434)
T ss_pred HHhhCcEEEEeccccHHHHh--c--------cCCC----CCCC-----cHHHHhCCCCCCccceeeeeeeee
Confidence 35678999999999999421 1 1112 1111 112356777744455577777775
No 465
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=36.52 E-value=96 Score=23.10 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=16.6
Q ss_pred EecCCCEEEEEecCCeEEEEeCC
Q 043350 485 FCTYGSRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 485 fs~dg~~Lasgs~DG~I~vwd~~ 507 (1133)
....+..|++++.||.|+.+|.+
T Consensus 17 ~~v~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 17 PAVAGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp -EECTSEEEEE-TTSEEEEEETT
T ss_pred CEEECCEEEEEcCCCEEEEEeCC
Confidence 45567788888889999888864
No 466
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=36.45 E-value=3.3e+02 Score=33.93 Aligned_cols=31 Identities=13% Similarity=0.144 Sum_probs=26.7
Q ss_pred CCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCC
Q 043350 262 RGPVLAMIFSSQGD-LWSGGEGGVIKIWPWES 292 (1133)
Q Consensus 262 ~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~ 292 (1133)
...++++.-+|.|+ +++++.||+|+++++..
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~ 45 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIP 45 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecc
Confidence 45678888889999 99999999999998854
No 467
>PRK13204 ureB urease subunit beta; Reviewed
Probab=36.38 E-value=81 Score=31.31 Aligned_cols=71 Identities=20% Similarity=0.290 Sum_probs=41.8
Q ss_pred ceEEecCeEEecc-cceEEEEEEECCccc---eEEEEEeecCCCcccCCCCCCccccCCCcCCCCceEEecCce---EEC
Q 043350 956 ETIVSTESIILQN-QDTCTLRITNKSAQE---KAIFKIICDGQSTVKDDGDASDYRLRGSFGFPRWLEVTPAAG---VIK 1028 (1133)
Q Consensus 956 ~~~~~~~~~~~~~-~~~~~~~i~n~~~~~---~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~p~~~---~~~ 1028 (1133)
+.++..+.|.+.. .....|+++|+|..+ -.+|.|..-..... =| + ...++ .+..-.+| ..+
T Consensus 28 ei~~~~~~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~-FD------R-~~A~G----~RLdIPAGTAVRFE 95 (159)
T PRK13204 28 GYVLAKDPIEINQGRPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLE-FD------R-SKAFG----LRLDIPANTAVRFE 95 (159)
T ss_pred eEEeCCCCeEeCCCCcEEEEEEEeCCCCceEeccccchhhcCcccc-cc------H-hhhcC----cccccCCCCeEeEC
Confidence 4566777888765 456789999999751 23788863221110 00 0 00111 13333333 689
Q ss_pred CCCeEEEEEE
Q 043350 1029 PDSYIEVSVH 1038 (1133)
Q Consensus 1029 p~~~~~~~~~ 1038 (1133)
||++.+|+|-
T Consensus 96 PG~~k~V~LV 105 (159)
T PRK13204 96 PGDEKEVTLV 105 (159)
T ss_pred CCCeeEEEEE
Confidence 9999999987
No 468
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=36.36 E-value=5.4e+02 Score=32.23 Aligned_cols=68 Identities=16% Similarity=0.261 Sum_probs=45.1
Q ss_pred eEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCCC
Q 043350 215 TMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWES 292 (1133)
Q Consensus 215 V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~~ 292 (1133)
++++.-+|.++-+++|+.||.|++++... +....+-....|-..+.|...| |+++..|..+.-|.-+.
T Consensus 17 ~~aiqshp~~~s~v~~~~d~si~lfn~~~---------r~qski~~~~~p~~nlv~tnhg-l~~~tsdrr~la~~~dg 84 (1636)
T KOG3616|consen 17 TTAIQSHPGGQSFVLAHQDGSIILFNFIP---------RRQSKICEEAKPKENLVFTNHG-LVTATSDRRALAWKEDG 84 (1636)
T ss_pred eeeeeecCCCceEEEEecCCcEEEEeecc---------cchhhhhhhcCCccceeeeccc-eEEEeccchhheeeccC
Confidence 45566677999999999999999999865 1111111112233455665333 88888888888887654
No 469
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=36.36 E-value=4.4e+02 Score=32.83 Aligned_cols=92 Identities=16% Similarity=0.111 Sum_probs=49.8
Q ss_pred CC-eEEEEecCC------eEEEEeCCCCeeEE---EecCCcceeEEecCCCEEEEEecCC-----eEEEEeCCCCccee-
Q 043350 450 DG-MIWSGCTNG------LLVQWDGNGNRVSD---ILHHQCAVQCFCTYGSRMYVGYVSG-----YLQILDLDGNLTAS- 513 (1133)
Q Consensus 450 dg-~L~sgs~DG------~I~vWd~~g~~l~~---~~~h~~~V~~fs~dg~~Lasgs~DG-----~I~vwd~~g~~l~~- 513 (1133)
+| ..++|+.++ ++..||...+.-.. +..-........-++...++|+.|+ +|..||...+....
T Consensus 427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v 506 (571)
T KOG4441|consen 427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV 506 (571)
T ss_pred CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence 45 556666444 35667764432222 2211111222455677778888776 37778877643322
Q ss_pred --eeccccCeEEeeecccceeeecccCCee
Q 043350 514 --WIAHSSPVLKLAVGVDHIYSLAAHGGIR 541 (1133)
Q Consensus 514 --~~~H~~~V~~l~fs~~~L~S~s~Dg~I~ 541 (1133)
.......+..+...+...+.++.||.-.
T Consensus 507 ~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~ 536 (571)
T KOG4441|consen 507 APMTSPRSAVGVVVLGGKLYAVGGFDGNNN 536 (571)
T ss_pred ccCccccccccEEEECCEEEEEecccCccc
Confidence 2233344444555577778888777533
No 470
>PRK13201 ureB urease subunit beta; Reviewed
Probab=35.98 E-value=87 Score=30.35 Aligned_cols=70 Identities=16% Similarity=0.259 Sum_probs=39.8
Q ss_pred eEEecCeEEecc-cceEEEEEEECCccc---eEEEEEeecCCCcccCCCCCCccccCCCcCCCCceEEecCce---EECC
Q 043350 957 TIVSTESIILQN-QDTCTLRITNKSAQE---KAIFKIICDGQSTVKDDGDASDYRLRGSFGFPRWLEVTPAAG---VIKP 1029 (1133)
Q Consensus 957 ~~~~~~~~~~~~-~~~~~~~i~n~~~~~---~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~p~~~---~~~p 1029 (1133)
.++..+.|.+.. .....|+++|||..+ -.+|.|..-.+... =| + ...++ .+..-.+| ..+|
T Consensus 6 i~~~~~~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~-FD------R-~~A~G----~RLdIPAGTAVRFEP 73 (136)
T PRK13201 6 IITKSTEVEINNHHPETVIEVENTGDRPIQVGSHFHFYEANAALD-FE------R-EMAYG----KHLDIPAGAAVRFEP 73 (136)
T ss_pred EecCCCCeEeCCCCCEEEEEEEeCCCcceEeccccchhhcCcccc-cc------H-hhhcC----cccccCCCCeEeECC
Confidence 345556676654 456789999999751 23788863221110 00 0 00111 23333334 6899
Q ss_pred CCeEEEEEE
Q 043350 1030 DSYIEVSVH 1038 (1133)
Q Consensus 1030 ~~~~~~~~~ 1038 (1133)
|++.+|+|-
T Consensus 74 G~~k~V~LV 82 (136)
T PRK13201 74 GDKKEVQLV 82 (136)
T ss_pred CCeEEEEEE
Confidence 999999987
No 471
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.89 E-value=21 Score=40.00 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=28.6
Q ss_pred ccceeEEEEEEEc-CeEEEEEecccc-cChHHHHHHHHHHHHHHHhC
Q 043350 695 GNKGGVGLRIRVY-DRTICFVNCHLA-AHLEAVNRRNADYDHIYRNM 739 (1133)
Q Consensus 695 gnKG~v~~r~~~~-~~~~~fvn~Hla-a~~~~~~~Rn~d~~~i~~~~ 739 (1133)
+-||+.++..... ++.+..+|.|.- .--..-..| ++..++.+.+
T Consensus 173 ~pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~~~~~~-~ql~~l~~~i 218 (309)
T COG3021 173 LPKSALATAYPLPDGTELTVVALHAVNFPVGTDPQR-AQLLELGDQI 218 (309)
T ss_pred CCccceeEEEEcCCCCEEEEEeeccccccCCccHHH-HHHHHHHHHH
Confidence 6889988888765 578999999986 222222333 5566665553
No 472
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=35.75 E-value=2.2e+02 Score=36.12 Aligned_cols=115 Identities=11% Similarity=0.034 Sum_probs=67.7
Q ss_pred CCCEEEEecCCCeEEeccCCCC----CCC----CCCeeeeccCCCccccccceEEEEE-e--CCCCeEE--ecCCcEEEe
Q 043350 114 MVEFIGSGGGTGIFKVPSRAAV----HPG----RPPCLELRPHPLKETQAGRFLRNIA-C--TDTQLWA--GQECGVRFW 180 (1133)
Q Consensus 114 ~g~~lasgs~dg~irlW~~~~~----~~g----~~~~~~l~~H~~~~~~~g~~V~~v~-s--~dg~lla--s~Dg~VrvW 180 (1133)
..+.|+.+.+||.|.+|-.+.. ... ..........+.....++...|+++ . ....++| +....|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 3568999999999999964221 000 0000001111222234556788998 6 7778888 445577777
Q ss_pred eCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCC---C---EEEEEeCCCeEEEEeCC
Q 043350 181 NLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGN---R---LVWTGHKDGKIRSWKMD 242 (1133)
Q Consensus 181 dl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~---~---~LaSgs~Dg~V~vWd~~ 242 (1133)
-+...... ..|. + ...+...|.||+|-++. . .|++++-.|.+.+|++.
T Consensus 193 af~l~~~r-~~~~-----------~--s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 193 AFALVDER-FYHV-----------P--SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEeccccc-cccc-----------c--ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 65442111 1111 1 11255578899997732 2 78889999999999884
No 473
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=34.85 E-value=4.3e+02 Score=31.28 Aligned_cols=103 Identities=16% Similarity=0.112 Sum_probs=63.7
Q ss_pred CCEEEEEECCCCeEEEEecCCeEEEEeCCCC-----eeEEEecC--CcceeE--EecCCCEEEEEecCCeEEEEeCCCCc
Q 043350 440 KRTEAMVLTADGMIWSGCTNGLLVQWDGNGN-----RVSDILHH--QCAVQC--FCTYGSRMYVGYVSGYLQILDLDGNL 510 (1133)
Q Consensus 440 ~~V~sl~~spdg~L~sgs~DG~I~vWd~~g~-----~l~~~~~h--~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~~ 510 (1133)
..+.++.+.+++.++..+.+|.+..=+-.|. .+...... ...+.. +..++. +++++..|.+....-.|+.
T Consensus 281 ~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s~D~G~t 359 (398)
T PLN00033 281 RRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGGSGILLRSTDGGKS 359 (398)
T ss_pred cceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEECCCcEEEeCCCCcc
Confidence 4467788888885556667787655444553 23333322 234565 555555 5556678888877666654
Q ss_pred ceeee---ccccCeEEeeec-ccceeeecccCCeeec
Q 043350 511 TASWI---AHSSPVLKLAVG-VDHIYSLAAHGGIRGW 543 (1133)
Q Consensus 511 l~~~~---~H~~~V~~l~fs-~~~L~S~s~Dg~I~lW 543 (1133)
-.... .-......+.|. .+..+..+.+|.|.-|
T Consensus 360 W~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 360 WKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred eeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 32222 224567889987 6778888889987755
No 474
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=33.85 E-value=1.3e+02 Score=35.85 Aligned_cols=72 Identities=13% Similarity=0.044 Sum_probs=43.2
Q ss_pred EEecCeEEecccceEEEEEEECCccceEEEEEeecCCCcccCCCCCCccccCCCcCCCCceEEecCceEECCCCeEEEEE
Q 043350 958 IVSTESIILQNQDTCTLRITNKSAQEKAIFKIICDGQSTVKDDGDASDYRLRGSFGFPRWLEVTPAAGVIKPDSYIEVSV 1037 (1133)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~i~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~p~~~~~~p~~~~~~~~ 1037 (1133)
.+.|..-.++......++|.|+|.+ ...|+-..... . +..+.. ........-.....|.|.|||+..+.+
T Consensus 238 ~l~Fe~~p~e~~~~~v~~l~N~Gt~-~I~y~W~~~~~-~-~~~~~~-------~~~~~~~F~Fd~~~gvilPGe~~~~~~ 307 (426)
T PF14646_consen 238 RLTFECHPGERVSKEVVRLENNGTT-AIYYSWRRVPF-F-KNFGSL-------FRAQDQRFYFDTSSGVILPGETRNFPF 307 (426)
T ss_pred EEEEEcccCceeeEEEEEEecCCce-EEEEEEEeccc-c-cccchh-------ccccCCeEEEeCCCCEECCCceEEEEE
Confidence 4444443444433444449999998 67777753211 0 010000 011346677888999999999999988
Q ss_pred EE
Q 043350 1038 HH 1039 (1133)
Q Consensus 1038 ~~ 1039 (1133)
..
T Consensus 308 ~F 309 (426)
T PF14646_consen 308 MF 309 (426)
T ss_pred EE
Confidence 85
No 475
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=32.23 E-value=8.8e+02 Score=28.38 Aligned_cols=141 Identities=13% Similarity=0.108 Sum_probs=84.4
Q ss_pred eEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCC---CCccccccccccceeeccC
Q 043350 345 ARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNK---KEKPHGFLQRSRNAIMGAA 421 (1133)
Q Consensus 345 i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~---Dg~i~~~~~~~~~~~~~~~ 421 (1133)
+.+.+..+..|.+.|..+...+....... ....+++++++.. +..+.. ++++..++. ..
T Consensus 88 vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~---------vYV~n~~~~~~~vsvid~--------~t 149 (381)
T COG3391 88 VYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKY---------VYVANAGNGNNTVSVIDA--------AT 149 (381)
T ss_pred EEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCE---------EEEEecccCCceEEEEeC--------CC
Confidence 33444567889999977777776654433 4457889998876 444433 344422221 11
Q ss_pred CceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEE-ecCCeEEEEeCCCCeeEE------EecCCcceeE-EecCCCEE
Q 043350 422 DAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSG-CTNGLLVQWDGNGNRVSD------ILHHQCAVQC-FCTYGSRM 492 (1133)
Q Consensus 422 ~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sg-s~DG~I~vWd~~g~~l~~------~~~h~~~V~~-fs~dg~~L 492 (1133)
..+... -+.|. .+ ..++++|+| .++.. ..++.|.+.|.++..+.. +.....+-.- ++++|.++
T Consensus 150 ~~~~~~--~~vG~-----~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~ 221 (381)
T COG3391 150 NKVTAT--IPVGN-----TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRV 221 (381)
T ss_pred CeEEEE--EecCC-----Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEE
Confidence 122211 21121 12 678899999 45554 478999999997765553 2223333333 99999977
Q ss_pred EEEecC---CeEEEEeCCCCcc
Q 043350 493 YVGYVS---GYLQILDLDGNLT 511 (1133)
Q Consensus 493 asgs~D---G~I~vwd~~g~~l 511 (1133)
.+.... +.+.+.|.....+
T Consensus 222 yV~~~~~~~~~v~~id~~~~~v 243 (381)
T COG3391 222 YVANDGSGSNNVLKIDTATGNV 243 (381)
T ss_pred EEEeccCCCceEEEEeCCCceE
Confidence 766644 5888888875433
No 476
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=31.55 E-value=9e+02 Score=28.29 Aligned_cols=137 Identities=12% Similarity=0.162 Sum_probs=79.7
Q ss_pred CCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEee-CCCCccccccccccceeeccCCceEEEEE
Q 043350 351 QPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSS-NKKEKPHGFLQRSRNAIMGAADAVRRVAT 429 (1133)
Q Consensus 351 ~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasg-s~Dg~i~~~~~~~~~~~~~~~~~V~~v~~ 429 (1133)
.++++.+.|..++..+........+ ..++++|++.. +... ..++.+..++... ..+.. ..
T Consensus 138 ~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~---------vyv~~~~~~~v~vi~~~~--------~~v~~-~~ 198 (381)
T COG3391 138 GNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNK---------VYVTNSDDNTVSVIDTSG--------NSVVR-GS 198 (381)
T ss_pred CCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCe---------EEEEecCCCeEEEEeCCC--------cceec-cc
Confidence 4788888998888888875544444 78999999986 4443 3555553222111 11111 00
Q ss_pred ecCCcccCCCCCEEEEEECCCC-eEEEEecC---CeEEEEeCCC-CeeEE-EecCC-ccee-EEecCCCEEEEEe-cCCe
Q 043350 430 RGAGAFVDDTKRTEAMVLTADG-MIWSGCTN---GLLVQWDGNG-NRVSD-ILHHQ-CAVQ-CFCTYGSRMYVGY-VSGY 500 (1133)
Q Consensus 430 ~p~g~~~~h~~~V~sl~~spdg-~L~sgs~D---G~I~vWd~~g-~~l~~-~~~h~-~~V~-~fs~dg~~Lasgs-~DG~ 500 (1133)
+ +........-..+.++++| .++..... +.+...|... ..... ..... .+.. .++|+|+++.+.. ..+.
T Consensus 199 -~-~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~ 276 (381)
T COG3391 199 -V-GSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGT 276 (381)
T ss_pred -c-ccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCe
Confidence 0 0011222233456788888 45544433 5888888844 33333 22222 2222 2999999988885 4488
Q ss_pred EEEEeCCC
Q 043350 501 LQILDLDG 508 (1133)
Q Consensus 501 I~vwd~~g 508 (1133)
+.+-|...
T Consensus 277 V~vid~~~ 284 (381)
T COG3391 277 VSVIDGAT 284 (381)
T ss_pred EEEEeCCC
Confidence 99998775
No 477
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=31.48 E-value=3.2e+02 Score=32.48 Aligned_cols=29 Identities=24% Similarity=0.605 Sum_probs=22.5
Q ss_pred cCeEEeeec--ccceeeecccCCeeeccccC
Q 043350 519 SPVLKLAVG--VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 519 ~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s 547 (1133)
..|.+|+.+ .+.|++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 348888887 77899999999999999976
No 478
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=30.82 E-value=1.3e+02 Score=31.61 Aligned_cols=50 Identities=30% Similarity=0.390 Sum_probs=38.3
Q ss_pred ccceEEEEEEECCccceEEEEEeecCCCcccCCCCCCccccCCCcCCCCceEEecCceEECCCCeEEEEEEE
Q 043350 968 NQDTCTLRITNKSAQEKAIFKIICDGQSTVKDDGDASDYRLRGSFGFPRWLEVTPAAGVIKPDSYIEVSVHH 1039 (1133)
Q Consensus 968 ~~~~~~~~i~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~p~~~~~~p~~~~~~~~~~ 1039 (1133)
++.+.-+.|.|++.- +..|.+-. ..|.-.=|.|-.|.|+|+++++|.+.+
T Consensus 17 ~~ske~~sv~Nnspe-pvgfKVKT---------------------TaPK~YcVRPN~g~Iep~stv~VeVil 66 (242)
T COG5066 17 NKSKEMFSVQNNSPE-PVGFKVKT---------------------TAPKDYCVRPNMGLIEPMSTVEVEVIL 66 (242)
T ss_pred cccceeeEeecCCCC-ceeEEeec---------------------cCCcceeEcCCCceeccCCeeEEEEEe
Confidence 445556889999887 78888752 134556799999999999998888774
No 479
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=30.08 E-value=8.8e+02 Score=27.73 Aligned_cols=31 Identities=19% Similarity=0.301 Sum_probs=24.1
Q ss_pred CEEEEEECCCCeEEEEecCCeEEEEeCCCCe
Q 043350 441 RTEAMVLTADGMIWSGCTNGLLVQWDGNGNR 471 (1133)
Q Consensus 441 ~V~sl~~spdg~L~sgs~DG~I~vWd~~g~~ 471 (1133)
.-++|++.|||.++.+...|.|++++.++..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~ 33 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSL 33 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETTTEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCCCcC
Confidence 3578889999955666779999999966643
No 480
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=29.59 E-value=99 Score=35.27 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=18.6
Q ss_pred ceEEecCceEECCCCeEEEEEEEee
Q 043350 1017 WLEVTPAAGVIKPDSYIEVSVHHEE 1041 (1133)
Q Consensus 1017 wl~~~p~~~~~~p~~~~~~~~~~~~ 1041 (1133)
=|.|++.. -|.|||+.+|++++.|
T Consensus 331 GL~v~d~~-pI~PGETr~v~v~aqd 354 (399)
T TIGR03079 331 GLEVDDQS-AIAPGETVEVKMEAKD 354 (399)
T ss_pred cceeCCCC-CcCCCcceEEEEEEeh
Confidence 56666654 6899999999999654
No 481
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=29.29 E-value=12 Score=43.84 Aligned_cols=132 Identities=13% Similarity=0.111 Sum_probs=86.0
Q ss_pred EEECCCC--eEEEEecCCeEEEEeCCCCeeEEEec---CCcceeEEecCCCEEEEEecCCeEEEEeCCCC-cceeeeccc
Q 043350 445 MVLTADG--MIWSGCTNGLLVQWDGNGNRVSDILH---HQCAVQCFCTYGSRMYVGYVSGYLQILDLDGN-LTASWIAHS 518 (1133)
Q Consensus 445 l~~spdg--~L~sgs~DG~I~vWd~~g~~l~~~~~---h~~~V~~fs~dg~~Lasgs~DG~I~vwd~~g~-~l~~~~~H~ 518 (1133)
+++.-++ .++.+...+.+.+|+++.+.-+++.. |+.....|++.+..++.|...|.+.|++.... .+...-.|.
T Consensus 80 m~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~ 159 (615)
T KOG2247|consen 80 MAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQ 159 (615)
T ss_pred hhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccc
Confidence 3344455 56667788999999996644444332 44455559999999999999999999997642 222233389
Q ss_pred cCeEEeeec-ccceeeecccCCeeeccccCCCCchhhhHHHHhhhhcccccccccceEEEEEEcCC
Q 043350 519 SPVLKLAVG-VDHIYSLAAHGGIRGWTFTSPSPLDNIIRSEIAAKEAVYLRRDDVRILVGTWNVGQ 583 (1133)
Q Consensus 519 ~~V~~l~fs-~~~L~S~s~Dg~I~lW~l~s~~~ld~~i~~eL~~r~~eyt~~~~lrI~v~TWNv~~ 583 (1133)
..++++++. ..+.+.++.|..+-+-..... ...+.++..+|....-.-+.+-.|+-.+
T Consensus 160 RRgtq~av~lEd~vil~dcd~~L~v~~qege-------ta~ltevggepdnm~~~y~k~n~w~kag 218 (615)
T KOG2247|consen 160 RRGTQIAVTLEDYVILCDCDNTLSVTTQEGE-------TASLTEVGGEPDNMDFFYGKVNGWGKAG 218 (615)
T ss_pred cceeEEEecccceeeecCcHHHHHHhhhccc-------eeeeeeccCccchhhhheeeeecccccc
Confidence 999999999 888999988876654432211 0123344555555555555555666443
No 482
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=28.94 E-value=3.6e+02 Score=27.64 Aligned_cols=31 Identities=10% Similarity=0.041 Sum_probs=25.7
Q ss_pred CCeEEEEEeCC------CCEEEEEeCCCeEEEEeCCC
Q 043350 213 SPTMCLMVDCG------NRLVWTGHKDGKIRSWKMDQ 243 (1133)
Q Consensus 213 s~V~~la~spd------~~~LaSgs~Dg~V~vWd~~~ 243 (1133)
+.|..++|||- +-+||+-..++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 37899999992 45789999999999998764
No 483
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=28.63 E-value=5.9e+02 Score=28.63 Aligned_cols=103 Identities=14% Similarity=0.170 Sum_probs=69.4
Q ss_pred EEECCCCeEEEEecCCeEEEEeCCC--Ce-eEEEecCCcceeEEecCCCEEEEEecCCeEEEEeCCC--C--cceeeecc
Q 043350 445 MVLTADGMIWSGCTNGLLVQWDGNG--NR-VSDILHHQCAVQCFCTYGSRMYVGYVSGYLQILDLDG--N--LTASWIAH 517 (1133)
Q Consensus 445 l~~spdg~L~sgs~DG~I~vWd~~g--~~-l~~~~~h~~~V~~fs~dg~~Lasgs~DG~I~vwd~~g--~--~l~~~~~H 517 (1133)
+.++.+ +.+.+..+.-+++.|++. ++ +..+....+--.++.-.|++..++..|.-..+.|+.. + +...+...
T Consensus 92 v~vse~-yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~ 170 (370)
T COG5276 92 VRVSEE-YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALP 170 (370)
T ss_pred eEeccc-EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccC
Confidence 334433 455556667799999854 22 2222222234456888999999999777788999874 2 33334444
Q ss_pred ccCeEEeeecccceeeecccCCeeeccccCC
Q 043350 518 SSPVLKLAVGVDHIYSLAAHGGIRGWTFTSP 548 (1133)
Q Consensus 518 ~~~V~~l~fs~~~L~S~s~Dg~I~lW~l~s~ 548 (1133)
...-..++++|++-+-+..|+.+.+-|+..|
T Consensus 171 ~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp 201 (370)
T COG5276 171 GGDTHDVAISGNYAYVAWRDGGLTIVDVSNP 201 (370)
T ss_pred CCCceeEEEecCeEEEEEeCCCeEEEEccCC
Confidence 4555788899999999999999999998764
No 484
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=27.33 E-value=1.7e+02 Score=26.99 Aligned_cols=68 Identities=19% Similarity=0.261 Sum_probs=33.1
Q ss_pred eEEecCeEEeccc-ceEEEEEEECCccceE----EEEEeecCCCcccCCCCCCccccCC-CcCCCCceEEecCce---EE
Q 043350 957 TIVSTESIILQNQ-DTCTLRITNKSAQEKA----IFKIICDGQSTVKDDGDASDYRLRG-SFGFPRWLEVTPAAG---VI 1027 (1133)
Q Consensus 957 ~~~~~~~~~~~~~-~~~~~~i~n~~~~~~~----~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~wl~~~p~~~---~~ 1027 (1133)
..+..+.|.+... ....|+++|+|.. |. +|.|..-.... + ..|. .+ =++..-.+| ..
T Consensus 5 i~~~~~~I~lN~gr~~~~l~V~N~GDR-PIQVGSH~HF~E~N~aL--------~-FDR~~A~----G~RLdIPaGTavRF 70 (100)
T PF00699_consen 5 IILADGDIELNAGRERITLEVTNTGDR-PIQVGSHYHFFEVNPAL--------E-FDREAAY----GMRLDIPAGTAVRF 70 (100)
T ss_dssp EE--SSEEETTTTSEEEEEEEEE-SSS--EEEETTS-GGGS-TTE--------E-S-HHHHT----TEEE-SSTT-EEEE
T ss_pred EEeCCCcEEecCCCcEEEEEEEeCCCc-ceEEccccCHHHHhHHh--------h-hhHHHhC----CcccCcCCCCeEEE
Confidence 4556677777653 4667999999986 44 45554211100 0 0000 11 124443344 67
Q ss_pred CCCCeEEEEEE
Q 043350 1028 KPDSYIEVSVH 1038 (1133)
Q Consensus 1028 ~p~~~~~~~~~ 1038 (1133)
+||++.+|+|-
T Consensus 71 EPG~~k~V~LV 81 (100)
T PF00699_consen 71 EPGDTKEVELV 81 (100)
T ss_dssp -TT-EEEEEEE
T ss_pred CCCCcEEEEEE
Confidence 99999999887
No 485
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=27.30 E-value=3e+02 Score=36.52 Aligned_cols=152 Identities=14% Similarity=0.163 Sum_probs=84.6
Q ss_pred CCEEEEec-----C----CCeEEeccCCCC--CCCCCCeeeeccCCCccccccceEEEEEeCCCCeEEecCCcEEEeeCC
Q 043350 115 VEFIGSGG-----G----TGIFKVPSRAAV--HPGRPPCLELRPHPLKETQAGRFLRNIACTDTQLWAGQECGVRFWNLE 183 (1133)
Q Consensus 115 g~~lasgs-----~----dg~irlW~~~~~--~~g~~~~~~l~~H~~~~~~~g~~V~~v~s~dg~llas~Dg~VrvWdl~ 183 (1133)
..|||.|. . -|.+.|+++-.. .||+| ....+-...........|.+++.-+|.++.+....|.||+++
T Consensus 1046 k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP-~t~~KlKel~~eE~KGtVsavceV~G~l~~~~GqKI~v~~l~ 1124 (1366)
T KOG1896|consen 1046 KPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKP-FTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQGQKIIVRKLD 1124 (1366)
T ss_pred cceEEEEEeecccccccCcccEEEEEEEEecCCCCCC-cccceeeeeehhhcccceEEEEEeccEEEEccCcEEEEEEec
Confidence 34677663 2 367788874321 34554 111111111112233478888878899888999999999995
Q ss_pred CCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccc-c-C
Q 043350 184 DSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQ-A-H 261 (1133)
Q Consensus 184 ~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~-g-H 261 (1133)
...... |- +|+ .-+++-....--.++|+.|.--..|.+...+... ..+..+. . -
T Consensus 1125 r~~~li-gV------------aFi----D~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep-------~rlsL~srd~~ 1180 (1366)
T KOG1896|consen 1125 RDSELI-GV------------AFI----DLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEP-------YRLSLLSRDFE 1180 (1366)
T ss_pred cCCcce-ee------------EEe----ccceeEEehhhhhhheehhhhhhceEEEEEccCc-------eEEEEeecCCc
Confidence 521111 00 110 0122222222235667776666666666555311 1111111 1 1
Q ss_pred CCCeEEEEEeeCCc---EEEEeCCCcEEEEeCC
Q 043350 262 RGPVLAMIFSSQGD---LWSGGEGGVIKIWPWE 291 (1133)
Q Consensus 262 ~~~V~sl~fsp~g~---L~Sgs~DgtI~iWdl~ 291 (1133)
.-.|+++.|.-+|. ++.+..|+.|+++-..
T Consensus 1181 ~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1181 PLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred hhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 34688999999987 8888999999988653
No 486
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=26.89 E-value=1.7e+02 Score=33.52 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=14.4
Q ss_pred ceEEecCceEECCCCeEEEEEEEee
Q 043350 1017 WLEVTPAAGVIKPDSYIEVSVHHEE 1041 (1133)
Q Consensus 1017 wl~~~p~~~~~~p~~~~~~~~~~~~ 1041 (1133)
=|+|+|.. -|.|||+.++++++.|
T Consensus 312 gL~vs~~~-pI~PGETrtl~V~a~d 335 (381)
T PF04744_consen 312 GLSVSDNS-PIAPGETRTLTVEAQD 335 (381)
T ss_dssp -EEES--S--B-TT-EEEEEEEEE-
T ss_pred cceeCCCC-CcCCCceEEEEEEeeh
Confidence 47788764 7999999999999654
No 487
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.44 E-value=1.9e+02 Score=36.30 Aligned_cols=83 Identities=12% Similarity=0.143 Sum_probs=52.4
Q ss_pred cCCeEEEEeCCCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCCCcceee----eccccCeEEeeecccce
Q 043350 458 TNGLLVQWDGNGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGNLTASW----IAHSSPVLKLAVGVDHI 531 (1133)
Q Consensus 458 ~DG~I~vWd~~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~~l~~~----~~H~~~V~~l~fs~~~L 531 (1133)
.--.|+||+..|+.+.++......+.. |+.+.. |++-..||++.||++-|..+... ......|..+.|..+-+
T Consensus 62 a~~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 62 ARPYIRIFNISGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred cceeEEEEeccccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence 345699999999999887764445555 666555 66678999999999988655432 12223344444443444
Q ss_pred eeecccCCee
Q 043350 532 YSLAAHGGIR 541 (1133)
Q Consensus 532 ~S~s~Dg~I~ 541 (1133)
+....+|.+.
T Consensus 141 avlt~~g~v~ 150 (829)
T KOG2280|consen 141 AVLTVSGQVI 150 (829)
T ss_pred EEEecCCcEE
Confidence 4444455443
No 488
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=25.43 E-value=1.6e+02 Score=36.43 Aligned_cols=71 Identities=13% Similarity=0.143 Sum_probs=37.8
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcc-----------cccccc--------cCCCCeEEEEEee----CCc-EE
Q 043350 222 CGNRLVWTGHKDGKIRSWKMDQTLDDANNPFK-----------EGLSWQ--------AHRGPVLAMIFSS----QGD-LW 277 (1133)
Q Consensus 222 pd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~-----------~~~~l~--------gH~~~V~sl~fsp----~g~-L~ 277 (1133)
++...++.+..||.+.......... +...+. .+..+. .-.+.+.+++++. +.. |+
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDS-DGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLF 234 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES-----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccC-CCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEE
Confidence 3666788888999888877653110 000000 000110 1124456666665 344 88
Q ss_pred EEeCCCcEEEEeCCCC
Q 043350 278 SGGEGGVIKIWPWESI 293 (1133)
Q Consensus 278 Sgs~DgtI~iWdl~~~ 293 (1133)
+.+.|+++|+||+.+.
T Consensus 235 tl~~D~~LRiW~l~t~ 250 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETG 250 (547)
T ss_dssp EEETTSEEEEEETTTT
T ss_pred EEeCCCeEEEEECCCC
Confidence 9999999999999874
No 489
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=24.74 E-value=2.3e+02 Score=27.97 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=12.9
Q ss_pred ceEECCCCeEEEEEE
Q 043350 1024 AGVIKPDSYIEVSVH 1038 (1133)
Q Consensus 1024 ~~~~~p~~~~~~~~~ 1038 (1133)
...|.|||+..+++.
T Consensus 93 s~~I~pGet~TitF~ 107 (135)
T TIGR03096 93 SEVIKAGETKTISFK 107 (135)
T ss_pred ceEECCCCeEEEEEE
Confidence 678999999988876
No 490
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.02 E-value=6e+02 Score=34.22 Aligned_cols=32 Identities=6% Similarity=0.212 Sum_probs=27.7
Q ss_pred CCCCCEEEEEECCCC-eEEEEecCCeEEEEeCC
Q 043350 437 DDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGN 468 (1133)
Q Consensus 437 ~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~ 468 (1133)
.+..+|..+.+...- .+++-++.|+|.+|++.
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~ 272 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIG 272 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEcc
Confidence 567789999888776 89999999999999993
No 491
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=23.72 E-value=1.3e+02 Score=31.43 Aligned_cols=70 Identities=21% Similarity=0.312 Sum_probs=40.0
Q ss_pred eEEecCeEEecc-cceEEEEEEECCccc---eEEEEEeecCCCcccCCCCCCccccCCCcCCCCceEEecCce---EECC
Q 043350 957 TIVSTESIILQN-QDTCTLRITNKSAQE---KAIFKIICDGQSTVKDDGDASDYRLRGSFGFPRWLEVTPAAG---VIKP 1029 (1133)
Q Consensus 957 ~~~~~~~~~~~~-~~~~~~~i~n~~~~~---~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~p~~~---~~~p 1029 (1133)
.++..+.|.+.. .+...|+++|+|..+ -.+|.|..-.+... =| + ...++ .+..-.+| ..+|
T Consensus 115 i~~~~~~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~-FD------R-~~A~G----~RLdIpAGTavRFEP 182 (208)
T PRK13192 115 ILPGDGEIELNAGRPAVTLDVTNTGDRPIQVGSHFHFFEVNRALR-FD------R-AAAYG----MRLDIPAGTAVRFEP 182 (208)
T ss_pred EEcCCCCeeeCCCCCEEEEEEEeCCCCceeeccccchhhcCchhh-cc------H-HHhcC----cccccCCCCeEeECC
Confidence 445556677654 467789999999751 24788864221110 00 0 00111 13333334 6899
Q ss_pred CCeEEEEEE
Q 043350 1030 DSYIEVSVH 1038 (1133)
Q Consensus 1030 ~~~~~~~~~ 1038 (1133)
|++.+|+|-
T Consensus 183 G~~k~V~LV 191 (208)
T PRK13192 183 GETKEVRLV 191 (208)
T ss_pred CCeeEEEEE
Confidence 999999887
No 492
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=23.21 E-value=6.8e+02 Score=32.11 Aligned_cols=71 Identities=11% Similarity=0.060 Sum_probs=44.5
Q ss_pred eEEEEEeCCCCeEEecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEE
Q 043350 158 FLRNIACTDTQLWAGQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIR 237 (1133)
Q Consensus 158 ~V~~v~s~dg~llas~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~ 237 (1133)
+|+..+..+.-+|++.+|.|.++...+....+. ......|...|+++.+...+=+++-++.| .++
T Consensus 628 Pvrsla~~ed~~was~gG~V~vi~~tt~~~~~~--------------leahqee~~~Vthm~~~~~gVwvafasG~-~~r 692 (925)
T KOG3522|consen 628 PVRSLAFQEDFVWASEGGCVHVIPSTTFIRSWD--------------LEAHQEEAHSVTHMLYLDNGVWVAFASGD-EER 692 (925)
T ss_pred cccchhhhhceeeeecCCceEEEechhccccch--------------hHHHHhhcceEEEEEeeCCceEEEEcCCC-EEE
Confidence 566666556667779999999999877322211 00112345589999998777666655554 455
Q ss_pred EEeCCC
Q 043350 238 SWKMDQ 243 (1133)
Q Consensus 238 vWd~~~ 243 (1133)
++...+
T Consensus 693 lfhtet 698 (925)
T KOG3522|consen 693 LFHTET 698 (925)
T ss_pred Eecccc
Confidence 555443
No 493
>smart00183 NAT_PEP Natriuretic peptide. Atrial natriuretic peptides are vertebrate hormones important in the overall control of cardiovascular homeostasis and sodium and water balance in general.
Probab=22.85 E-value=39 Score=22.72 Aligned_cols=16 Identities=44% Similarity=0.569 Sum_probs=13.3
Q ss_pred eeecCCCccccccCCC
Q 043350 1088 RHCFSAKTVRIDSKSN 1103 (1133)
Q Consensus 1088 ~~~~~~~~~~~~~~~~ 1103 (1133)
.+|||..++||-+-+|
T Consensus 6 ~gCFG~~~DRIgs~Sg 21 (26)
T smart00183 6 SGCFGLKLDRIGSMSG 21 (26)
T ss_pred CCcccccccccccccc
Confidence 4799999999987655
No 494
>PRK13986 urease subunit alpha; Provisional
Probab=22.71 E-value=1.3e+02 Score=31.75 Aligned_cols=70 Identities=17% Similarity=0.291 Sum_probs=39.5
Q ss_pred eEEecCeEEecc-cceEEEEEEECCccc---eEEEEEeecCCCcccCCCCCCccccCCCcCCCCceEEecCce---EECC
Q 043350 957 TIVSTESIILQN-QDTCTLRITNKSAQE---KAIFKIICDGQSTVKDDGDASDYRLRGSFGFPRWLEVTPAAG---VIKP 1029 (1133)
Q Consensus 957 ~~~~~~~~~~~~-~~~~~~~i~n~~~~~---~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~p~~~---~~~p 1029 (1133)
..+..+.|.+.. .....|+++|+|..+ -.+|.|..-..... =| + ...++ .+..-.+| ..+|
T Consensus 111 ~~~~~~~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~-FD------R-~~A~G----~RLdIpAGTavRFEP 178 (225)
T PRK13986 111 LFLKDEDITINAGKKAVSVKVKNVGDRPVQVGSHFHFFEVNRCLE-FD------R-EKAFG----KRLDIASGTAVRFEP 178 (225)
T ss_pred EecCCCCeecCCCCcEEEEEEEeCCCCceeeccccchhhcCchhh-cc------H-HHhcC----cccccCCCCeEeECC
Confidence 344556666654 356789999999751 24788863221110 00 0 00111 13333333 6899
Q ss_pred CCeEEEEEE
Q 043350 1030 DSYIEVSVH 1038 (1133)
Q Consensus 1030 ~~~~~~~~~ 1038 (1133)
|++.+|+|-
T Consensus 179 G~~k~V~LV 187 (225)
T PRK13986 179 GEEKSVELI 187 (225)
T ss_pred CCeeEEEEE
Confidence 999999987
No 495
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
Probab=22.63 E-value=1.6e+02 Score=23.40 Aligned_cols=16 Identities=38% Similarity=0.681 Sum_probs=13.9
Q ss_pred cCCCCceEEecCceEE
Q 043350 1012 FGFPRWLEVTPAAGVI 1027 (1133)
Q Consensus 1012 ~~~~~wl~~~p~~~~~ 1027 (1133)
..+|.||.+.+..|.|
T Consensus 10 ~~LP~gLs~d~~tG~i 25 (49)
T PF05345_consen 10 GGLPSGLSLDPSTGTI 25 (49)
T ss_pred CCCCCcEEEeCCCCEE
Confidence 3589999999999877
No 496
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=22.54 E-value=2.6e+02 Score=26.98 Aligned_cols=68 Identities=22% Similarity=0.373 Sum_probs=40.6
Q ss_pred ccceEEEEEEECCccceEEEEEeecCCCcccCCCCCCcc-------ccCCCcCCCCceEEecCceEECCCCeEEEEEEE
Q 043350 968 NQDTCTLRITNKSAQEKAIFKIICDGQSTVKDDGDASDY-------RLRGSFGFPRWLEVTPAAGVIKPDSYIEVSVHH 1039 (1133)
Q Consensus 968 ~~~~~~~~i~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~wl~~~p~~~~~~p~~~~~~~~~~ 1039 (1133)
..++..++|+|++.- +..|.+-...-.+ ..+| ..++ .....+.+..|+.+... -+|.|+|+.+|++++
T Consensus 27 q~~~l~v~i~N~s~~-~~tv~v~~~~A~T-n~nG-~I~Y~~~~~~~d~sl~~~~~~~v~~~~~-Vtl~~~~sk~V~~~i 101 (121)
T PF06030_consen 27 QKQTLEVRITNNSDK-EITVKVSANTATT-NDNG-VIDYSQNNPKKDKSLKYPFSDLVKIPKE-VTLPPNESKTVTFTI 101 (121)
T ss_pred CEEEEEEEEEeCCCC-CEEEEEEEeeeEe-cCCE-EEEECCCCcccCcccCcchHHhccCCcE-EEECCCCEEEEEEEE
Confidence 345667888998876 6777764321111 1111 0000 01112446788888666 899999999998885
No 497
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=22.49 E-value=2e+02 Score=21.00 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=18.4
Q ss_pred CCCCeEEEEEeeCCc--EEEEeCC--CcEEEE
Q 043350 261 HRGPVLAMIFSSQGD--LWSGGEG--GVIKIW 288 (1133)
Q Consensus 261 H~~~V~sl~fsp~g~--L~Sgs~D--gtI~iW 288 (1133)
..+.-....|+|||+ +.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 345667889999999 4555555 666665
No 498
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=22.42 E-value=1.8e+02 Score=31.05 Aligned_cols=49 Identities=22% Similarity=0.395 Sum_probs=0.0
Q ss_pred EecCC-CEEEEEecCCeEEEEeCCC---CcceeeeccccCeEEeeec--ccceeee
Q 043350 485 FCTYG-SRMYVGYVSGYLQILDLDG---NLTASWIAHSSPVLKLAVG--VDHIYSL 534 (1133)
Q Consensus 485 fs~dg-~~Lasgs~DG~I~vwd~~g---~~l~~~~~H~~~V~~l~fs--~~~L~S~ 534 (1133)
++..| +.|+.+...+.|-+|++.. .++.+|..- +.|..+.++ |+||+|.
T Consensus 23 ~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 23 VCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred eeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEE
No 499
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=22.31 E-value=7.2e+02 Score=27.86 Aligned_cols=50 Identities=14% Similarity=0.211 Sum_probs=32.1
Q ss_pred CeEEEEeCCCCCCCCCCCccccccc-ccCCCCeEEEEEeeCCc-EEEEe------CCCcEEEEeCCC
Q 043350 234 GKIRSWKMDQTLDDANNPFKEGLSW-QAHRGPVLAMIFSSQGD-LWSGG------EGGVIKIWPWES 292 (1133)
Q Consensus 234 g~V~vWd~~~~~~~~~~~~~~~~~l-~gH~~~V~sl~fsp~g~-L~Sgs------~DgtI~iWdl~~ 292 (1133)
..|++||...... ..+ .+-.+.|++|.|..+.+ ++.|. ....+-.||+.+
T Consensus 16 ~~lC~yd~~~~qW---------~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~ 73 (281)
T PF12768_consen 16 PGLCLYDTDNSQW---------SSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN 73 (281)
T ss_pred CEEEEEECCCCEe---------ecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC
Confidence 4699999876221 111 22467899999986666 66553 345567777765
No 500
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=22.08 E-value=1.8e+02 Score=20.22 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=17.6
Q ss_pred CCeEEEEecCCeEEEEeC-CCCeeEE
Q 043350 450 DGMIWSGCTNGLLVQWDG-NGNRVSD 474 (1133)
Q Consensus 450 dg~L~sgs~DG~I~vWd~-~g~~l~~ 474 (1133)
++.++.++.+|.+..+|. +|+.+.+
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEE
Confidence 446777778888888887 6665544
Done!