Query 043350
Match_columns 1133
No_of_seqs 1025 out of 4605
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 06:42:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043350.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043350hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mtc_A Type II inositol-1,4,5- 100.0 5.2E-88 1.8E-92 742.8 33.5 307 565-925 1-307 (313)
2 4a9c_A Phosphatidylinositol-3, 100.0 3.9E-82 1.3E-86 698.2 27.6 292 568-922 4-314 (316)
3 1i9z_A Synaptojanin, phosphati 100.0 5.1E-78 1.7E-82 683.5 33.5 331 549-942 2-338 (347)
4 2xsw_A 72 kDa inositol polypho 100.0 1.4E-76 4.7E-81 672.4 30.8 305 564-926 18-327 (357)
5 2imq_X Salivary nitrophorin; f 100.0 3.9E-60 1.3E-64 528.3 19.9 277 568-921 3-282 (282)
6 2ymu_A WD-40 repeat protein; u 100.0 1.2E-42 4.2E-47 427.9 51.1 440 71-544 25-577 (577)
7 2ymu_A WD-40 repeat protein; u 100.0 7.4E-40 2.5E-44 403.1 50.4 407 96-545 12-537 (577)
8 1nr0_A Actin interacting prote 100.0 1.6E-39 5.6E-44 404.3 50.4 428 71-549 27-569 (611)
9 1nr0_A Actin interacting prote 100.0 4.3E-38 1.5E-42 391.6 44.9 424 71-545 68-609 (611)
10 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-35 4.8E-40 398.9 44.9 407 97-551 612-1162(1249)
11 1pgu_A Actin interacting prote 100.0 4.7E-34 1.6E-38 353.2 44.2 399 109-547 24-614 (615)
12 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-34 4.3E-39 389.5 39.0 438 71-550 624-1210(1249)
13 2oaj_A Protein SNI1; WD40 repe 100.0 2.8E-34 9.6E-39 371.6 36.6 399 98-545 15-659 (902)
14 1vyh_C Platelet-activating fac 100.0 3.4E-33 1.2E-37 329.9 37.0 293 142-545 101-409 (410)
15 3ow8_A WD repeat-containing pr 100.0 1.3E-32 4.3E-37 313.9 30.7 278 208-545 28-319 (321)
16 4g56_B MGC81050 protein; prote 100.0 3E-32 1E-36 315.7 34.1 318 112-555 14-351 (357)
17 1got_B GT-beta; complex (GTP-b 100.0 8.9E-32 3E-36 309.2 37.7 281 142-544 48-340 (340)
18 4gqb_B Methylosome protein 50; 100.0 2.1E-32 7.2E-37 315.3 31.7 285 158-547 32-331 (344)
19 1vyh_C Platelet-activating fac 100.0 3.6E-32 1.2E-36 321.2 34.3 281 93-506 101-409 (410)
20 1got_B GT-beta; complex (GTP-b 100.0 1.8E-31 6.3E-36 306.6 34.4 282 96-505 51-340 (340)
21 2oaj_A Protein SNI1; WD40 repe 100.0 3E-31 1E-35 343.2 39.7 434 72-548 27-733 (902)
22 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.4E-31 4.6E-36 308.4 31.2 294 142-550 8-338 (345)
23 3ow8_A WD repeat-containing pr 100.0 4.6E-31 1.6E-35 301.1 32.4 283 142-506 25-319 (321)
24 4g56_B MGC81050 protein; prote 100.0 3.6E-31 1.2E-35 306.6 31.3 289 98-508 40-343 (357)
25 3iz6_a 40S ribosomal protein R 100.0 1.6E-31 5.6E-36 312.0 28.4 294 142-548 59-376 (380)
26 2pbi_B Guanine nucleotide-bind 100.0 2E-30 6.7E-35 300.0 36.7 288 142-505 57-354 (354)
27 3mkq_A Coatomer beta'-subunit; 100.0 1.1E-30 3.7E-35 335.0 37.8 394 98-549 11-462 (814)
28 1r5m_A SIR4-interacting protei 100.0 6.3E-31 2.1E-35 308.5 31.9 354 126-546 26-424 (425)
29 2pm9_A Protein WEB1, protein t 100.0 8.5E-31 2.9E-35 307.6 32.9 325 109-548 18-415 (416)
30 2pbi_B Guanine nucleotide-bind 100.0 2.3E-30 8E-35 299.4 35.3 277 206-544 58-354 (354)
31 4gqb_B Methylosome protein 50; 100.0 1.5E-30 5.2E-35 299.7 32.7 282 108-509 35-332 (344)
32 2ynn_A Coatomer subunit beta'; 100.0 3.4E-30 1.2E-34 291.1 34.1 280 206-547 7-302 (304)
33 1gxr_A ESG1, transducin-like e 100.0 4.8E-30 1.6E-34 291.3 34.9 314 109-546 15-336 (337)
34 3fm0_A Protein CIAO1; WDR39,SG 100.0 8.1E-31 2.8E-35 302.0 28.4 290 108-508 21-335 (345)
35 2ynn_A Coatomer subunit beta'; 100.0 3E-30 1E-34 291.6 32.3 282 97-507 10-301 (304)
36 4ery_A WD repeat-containing pr 100.0 7.4E-30 2.5E-34 288.6 34.4 281 205-546 16-311 (312)
37 2hes_X YDR267CP; beta-propelle 100.0 4.9E-30 1.7E-34 293.5 32.4 292 142-547 7-328 (330)
38 3vl1_A 26S proteasome regulato 100.0 3.1E-30 1.1E-34 303.7 31.2 334 108-547 61-419 (420)
39 3iz6_a 40S ribosomal protein R 100.0 2.3E-30 7.8E-35 302.4 28.3 295 96-508 62-375 (380)
40 1erj_A Transcriptional repress 100.0 2.2E-29 7.7E-34 295.3 36.5 298 147-548 62-390 (393)
41 1pgu_A Actin interacting prote 100.0 3.6E-29 1.2E-33 309.3 39.7 372 96-508 59-614 (615)
42 2hes_X YDR267CP; beta-propelle 100.0 2.8E-29 9.6E-34 287.2 32.5 298 97-508 11-328 (330)
43 3frx_A Guanine nucleotide-bind 100.0 6.6E-29 2.3E-33 282.7 33.5 287 207-547 12-317 (319)
44 3frx_A Guanine nucleotide-bind 100.0 6.9E-29 2.4E-33 282.5 31.1 279 97-507 14-316 (319)
45 1erj_A Transcriptional repress 100.0 1.3E-28 4.4E-33 288.9 33.9 300 98-507 62-388 (393)
46 1r5m_A SIR4-interacting protei 100.0 6.4E-29 2.2E-33 291.3 30.9 318 99-508 44-425 (425)
47 2xzm_R RACK1; ribosome, transl 100.0 1.5E-28 5E-33 282.6 32.4 282 207-547 16-340 (343)
48 4aow_A Guanine nucleotide-bind 100.0 2.4E-28 8.4E-33 278.1 33.4 288 142-507 31-336 (340)
49 2xzm_R RACK1; ribosome, transl 100.0 1.3E-28 4.6E-33 283.0 30.8 284 96-507 17-339 (343)
50 2j04_B YDR362CP, TAU91; beta p 100.0 4.8E-29 1.6E-33 302.7 26.5 326 111-509 169-518 (524)
51 4aow_A Guanine nucleotide-bind 100.0 6.8E-28 2.3E-32 274.4 33.1 287 207-548 33-338 (340)
52 3gre_A Serine/threonine-protei 100.0 6.7E-29 2.3E-33 294.5 25.0 362 107-544 31-437 (437)
53 4ery_A WD repeat-containing pr 100.0 1.8E-27 6.3E-32 268.9 34.2 283 141-507 15-311 (312)
54 3v7d_B Cell division control p 100.0 8.3E-27 2.8E-31 278.8 39.2 336 141-544 113-460 (464)
55 1k8k_C P40, ARP2/3 complex 41 100.0 7E-28 2.4E-32 277.9 28.5 293 207-547 3-361 (372)
56 2j04_B YDR362CP, TAU91; beta p 100.0 7.9E-29 2.7E-33 300.7 20.8 319 164-548 170-518 (524)
57 3zwl_B Eukaryotic translation 100.0 7.9E-27 2.7E-31 268.0 36.0 290 142-547 25-346 (369)
58 3dwl_C Actin-related protein 2 100.0 2.2E-28 7.5E-33 283.7 23.2 292 205-545 4-377 (377)
59 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.3E-26 4.6E-31 275.9 39.1 313 142-548 111-443 (445)
60 1gxr_A ESG1, transducin-like e 100.0 1.7E-26 5.8E-31 261.9 38.0 277 98-506 49-335 (337)
61 4e54_B DNA damage-binding prot 100.0 5.8E-28 2E-32 287.2 26.7 287 208-549 115-432 (435)
62 2pm7_B Protein transport prote 100.0 2.4E-27 8.1E-32 266.9 30.1 254 207-548 4-286 (297)
63 1sq9_A Antiviral protein SKI8; 100.0 1.8E-27 6.2E-32 277.6 29.9 289 207-547 11-395 (397)
64 4h5i_A Guanine nucleotide-exch 100.0 7.9E-28 2.7E-32 279.4 26.1 295 213-548 15-344 (365)
65 3dm0_A Maltose-binding peripla 100.0 8.1E-27 2.8E-31 294.4 36.5 290 143-507 376-692 (694)
66 3odt_A Protein DOA1; ubiquitin 100.0 1.9E-26 6.6E-31 258.8 35.6 281 141-550 10-299 (313)
67 3k26_A Polycomb protein EED; W 100.0 8.1E-28 2.8E-32 276.2 24.9 294 144-546 13-365 (366)
68 3i2n_A WD repeat-containing pr 100.0 1.6E-27 5.5E-32 273.0 27.2 284 142-549 11-355 (357)
69 3ei3_B DNA damage-binding prot 100.0 5.3E-27 1.8E-31 273.1 30.7 280 142-547 66-382 (383)
70 3mkq_A Coatomer beta'-subunit; 100.0 2.5E-27 8.4E-32 303.8 30.6 395 72-544 23-502 (814)
71 3vl1_A 26S proteasome regulato 100.0 6.3E-27 2.2E-31 275.4 30.5 285 159-548 59-366 (420)
72 4gga_A P55CDC, cell division c 100.0 3.2E-26 1.1E-30 270.7 34.9 279 215-551 108-399 (420)
73 3bg1_A Protein SEC13 homolog; 100.0 2.7E-27 9.3E-32 268.9 23.7 254 207-547 8-293 (316)
74 3ei3_B DNA damage-binding prot 100.0 1.3E-26 4.6E-31 269.7 29.9 287 97-508 70-382 (383)
75 4ggc_A P55CDC, cell division c 100.0 5.4E-26 1.9E-30 256.0 33.8 278 215-550 28-318 (318)
76 4a11_B DNA excision repair pro 100.0 5.8E-27 2E-31 273.4 26.0 324 172-551 20-369 (408)
77 4e54_B DNA damage-binding prot 100.0 4E-27 1.4E-31 279.9 24.5 289 98-508 117-430 (435)
78 3zwl_B Eukaryotic translation 99.9 1.2E-25 4E-30 258.2 34.1 286 97-508 29-346 (369)
79 4aez_A CDC20, WD repeat-contai 99.9 1.5E-25 5.1E-30 263.2 35.1 269 111-551 99-384 (401)
80 3dwl_C Actin-related protein 2 99.9 1.1E-26 3.6E-31 269.5 24.7 293 109-506 17-377 (377)
81 2ovr_B FBW7, F-BOX/WD repeat p 99.9 2E-25 6.7E-30 265.8 36.2 316 96-509 114-443 (445)
82 2pm7_B Protein transport prote 99.9 1.7E-25 5.9E-30 251.6 32.6 250 142-507 2-284 (297)
83 3dm0_A Maltose-binding peripla 99.9 5E-26 1.7E-30 287.1 31.5 281 207-546 377-692 (694)
84 1k8k_C P40, ARP2/3 complex 41 99.9 5.3E-26 1.8E-30 262.2 28.8 297 99-507 7-360 (372)
85 3odt_A Protein DOA1; ubiquitin 99.9 2.1E-25 7.3E-30 250.3 32.8 274 96-508 14-296 (313)
86 4h5i_A Guanine nucleotide-exch 99.9 1.3E-26 4.5E-31 269.2 22.2 287 109-508 20-343 (365)
87 4a11_B DNA excision repair pro 99.9 1.4E-25 4.7E-30 261.7 30.4 354 123-546 21-404 (408)
88 2pm9_A Protein WEB1, protein t 99.9 2.3E-26 7.9E-31 269.8 23.9 288 212-550 12-340 (416)
89 1p22_A F-BOX/WD-repeat protein 99.9 2.2E-25 7.4E-30 264.8 31.8 272 210-550 131-417 (435)
90 3v7d_B Cell division control p 99.9 2.1E-25 7E-30 266.7 31.5 308 111-504 128-459 (464)
91 1sq9_A Antiviral protein SKI8; 99.9 2.3E-25 7.9E-30 259.7 30.2 311 142-508 9-395 (397)
92 3f3f_A Nucleoporin SEH1; struc 99.9 2E-25 6.7E-30 253.2 28.0 268 207-550 6-340 (351)
93 3k26_A Polycomb protein EED; W 99.9 4.4E-26 1.5E-30 261.7 22.4 312 98-507 16-365 (366)
94 2j04_A TAU60, YPL007P, hypothe 99.9 1.8E-26 6.3E-31 274.0 18.3 305 108-535 20-349 (588)
95 3i2n_A WD repeat-containing pr 99.9 6.7E-25 2.3E-29 251.1 29.6 286 97-508 15-353 (357)
96 4gga_A P55CDC, cell division c 99.9 1.6E-24 5.5E-29 256.2 32.2 287 158-522 107-410 (420)
97 3bg1_A Protein SEC13 homolog; 99.9 1.6E-25 5.6E-30 254.2 22.4 249 143-507 7-292 (316)
98 3mmy_A MRNA export factor; mRN 99.9 1.9E-24 6.5E-29 248.0 31.0 282 142-547 32-346 (368)
99 3gre_A Serine/threonine-protei 99.9 1.3E-24 4.4E-29 257.6 29.7 331 88-505 48-437 (437)
100 1yfq_A Cell cycle arrest prote 99.9 6.9E-25 2.3E-29 250.0 26.0 284 145-545 7-322 (342)
101 1p22_A F-BOX/WD-repeat protein 99.9 2.2E-24 7.6E-29 256.1 31.3 265 110-510 138-416 (435)
102 3jrp_A Fusion protein of prote 99.9 1.1E-24 3.7E-29 251.4 27.5 245 207-547 6-287 (379)
103 4ggc_A P55CDC, cell division c 99.9 9E-24 3.1E-28 237.8 32.9 271 159-507 28-314 (318)
104 3dw8_B Serine/threonine-protei 99.9 2.9E-24 1E-28 254.6 27.1 315 211-544 27-443 (447)
105 2aq5_A Coronin-1A; WD40 repeat 99.9 1.4E-23 4.7E-28 246.3 29.3 275 164-547 43-342 (402)
106 3dw8_B Serine/threonine-protei 99.9 6.5E-24 2.2E-28 251.6 26.3 321 108-506 33-444 (447)
107 3jrp_A Fusion protein of prote 99.9 1.4E-23 4.8E-28 242.0 28.2 250 142-507 4-286 (379)
108 2j04_A TAU60, YPL007P, hypothe 99.9 2.4E-25 8.1E-30 264.5 13.4 308 71-496 24-349 (588)
109 1yfq_A Cell cycle arrest prote 99.9 2.3E-23 7.9E-28 237.3 29.0 290 98-505 9-321 (342)
110 3f3f_A Nucleoporin SEH1; struc 99.9 1.4E-23 4.9E-28 237.8 26.6 302 95-508 6-337 (351)
111 3jro_A Fusion protein of prote 99.9 1.2E-23 4.1E-28 267.8 23.8 247 207-549 4-287 (753)
112 2aq5_A Coronin-1A; WD40 repeat 99.9 1.3E-22 4.6E-27 237.9 28.4 282 109-509 40-343 (402)
113 3mmy_A MRNA export factor; mRN 99.9 2.4E-22 8.2E-27 230.4 28.5 294 96-506 35-344 (368)
114 2vdu_B TRNA (guanine-N(7)-)-me 99.9 7.6E-22 2.6E-26 235.4 33.2 233 158-547 104-391 (450)
115 4gq1_A NUP37; propeller, trans 99.9 2.5E-23 8.6E-28 243.9 19.7 269 164-507 98-388 (393)
116 3vu4_A KMHSV2; beta-propeller 99.9 3.4E-22 1.2E-26 230.9 27.9 289 142-549 12-338 (355)
117 2xyi_A Probable histone-bindin 99.9 2.6E-22 8.9E-27 238.1 25.2 256 208-547 124-410 (430)
118 4aez_A CDC20, WD repeat-contai 99.9 1.6E-21 5.5E-26 228.8 29.7 154 99-291 133-292 (401)
119 3qbt_B Inositol polyphosphate 99.9 2.1E-23 7E-28 204.9 11.1 130 926-1091 2-137 (140)
120 2xyi_A Probable histone-bindin 99.9 1E-21 3.6E-26 232.9 27.2 254 98-509 126-411 (430)
121 4gq1_A NUP37; propeller, trans 99.9 5.8E-23 2E-27 240.8 15.9 251 212-545 89-387 (393)
122 3jro_A Fusion protein of prote 99.9 4.6E-22 1.6E-26 253.2 23.6 251 142-508 2-285 (753)
123 2w18_A PALB2, fancn, partner a 99.9 3.4E-21 1.1E-25 215.9 26.6 283 214-545 41-355 (356)
124 1l0q_A Surface layer protein; 99.9 1.9E-20 6.5E-25 217.9 33.2 269 116-520 3-288 (391)
125 3lrv_A PRE-mRNA-splicing facto 99.9 2.2E-21 7.4E-26 222.6 22.6 273 111-509 44-334 (343)
126 3qis_A Inositol polyphosphate 99.9 3.1E-22 1.1E-26 229.4 14.2 155 922-1113 1-167 (366)
127 3bws_A Protein LP49; two-domai 99.9 1.5E-20 5E-25 222.1 27.5 270 159-546 125-431 (433)
128 3lrv_A PRE-mRNA-splicing facto 99.9 2.9E-21 1E-25 221.5 19.6 230 222-548 46-293 (343)
129 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.4E-20 4.9E-25 224.3 25.5 163 362-545 136-337 (450)
130 3bws_A Protein LP49; two-domai 99.9 7E-20 2.4E-24 216.3 29.7 282 109-508 128-432 (433)
131 2w18_A PALB2, fancn, partner a 99.8 4.4E-20 1.5E-24 206.8 23.5 267 172-506 60-355 (356)
132 2hqs_A Protein TOLB; TOLB, PAL 99.8 1.4E-19 5E-24 213.6 26.8 285 108-527 67-406 (415)
133 3vu4_A KMHSV2; beta-propeller 99.8 1.1E-19 3.7E-24 209.9 25.0 234 253-548 10-272 (355)
134 1l0q_A Surface layer protein; 99.8 1.8E-18 6.1E-23 201.2 30.3 252 172-548 9-276 (391)
135 1k32_A Tricorn protease; prote 99.8 8.7E-18 3E-22 221.6 35.3 360 109-546 20-501 (1045)
136 1k32_A Tricorn protease; prote 99.8 2.2E-17 7.4E-22 217.8 34.6 347 158-548 16-462 (1045)
137 1nir_A Nitrite reductase; hemo 99.8 1.6E-17 5.5E-22 202.7 30.1 324 110-516 144-523 (543)
138 2ecf_A Dipeptidyl peptidase IV 99.8 1.7E-17 5.8E-22 210.5 29.7 333 108-515 41-466 (741)
139 1nir_A Nitrite reductase; hemo 99.8 1.4E-16 4.6E-21 194.5 31.5 319 164-549 146-516 (543)
140 2hqs_A Protein TOLB; TOLB, PAL 99.7 5.2E-17 1.8E-21 191.7 22.3 217 224-546 143-386 (415)
141 1xfd_A DIP, dipeptidyl aminope 99.7 1E-16 3.5E-21 202.5 26.0 331 109-533 22-426 (723)
142 2ecf_A Dipeptidyl peptidase IV 99.7 1.3E-15 4.3E-20 193.2 29.6 345 158-546 38-458 (741)
143 2z3z_A Dipeptidyl aminopeptida 99.7 1.7E-15 5.7E-20 191.0 29.1 350 115-545 35-474 (706)
144 2ojh_A Uncharacterized protein 99.7 2.8E-15 9.7E-20 165.3 23.9 248 120-538 17-293 (297)
145 3u4y_A Uncharacterized protein 99.6 4E-14 1.4E-18 160.3 29.6 145 111-292 5-160 (331)
146 3vgz_A Uncharacterized protein 99.6 1.4E-13 4.8E-18 156.8 31.8 277 213-538 41-335 (353)
147 1ri6_A Putative isomerase YBHE 99.6 6.1E-14 2.1E-18 158.8 27.6 276 172-507 12-307 (343)
148 1xfd_A DIP, dipeptidyl aminope 99.6 1.6E-14 5.3E-19 182.5 24.9 302 159-548 19-394 (723)
149 3o4h_A Acylamino-acid-releasin 99.6 8.8E-15 3E-19 180.2 22.1 264 212-546 21-314 (582)
150 1pby_B Quinohemoprotein amine 99.6 9.2E-14 3.1E-18 156.9 27.8 279 116-519 2-322 (337)
151 2z3z_A Dipeptidyl aminopeptida 99.6 4.5E-14 1.6E-18 177.9 27.7 293 213-548 82-436 (706)
152 1ri6_A Putative isomerase YBHE 99.6 1.8E-13 6.1E-18 154.9 26.2 266 226-547 7-308 (343)
153 3u4y_A Uncharacterized protein 99.6 5.4E-13 1.9E-17 150.9 29.6 269 220-547 5-304 (331)
154 1z68_A Fibroblast activation p 99.6 2.7E-14 9.3E-19 180.4 20.5 355 109-549 21-445 (719)
155 2oit_A Nucleoporin 214KDA; NH2 99.5 9.8E-14 3.4E-18 164.5 19.6 128 159-291 39-180 (434)
156 1jmx_B Amine dehydrogenase; ox 99.5 1.4E-12 4.6E-17 148.2 26.7 302 109-517 5-335 (349)
157 3hfq_A Uncharacterized protein 99.5 1.1E-12 3.7E-17 149.9 25.4 276 173-547 14-317 (347)
158 3o4h_A Acylamino-acid-releasin 99.5 2E-13 6.9E-18 168.0 20.3 262 109-508 27-315 (582)
159 2ojh_A Uncharacterized protein 99.5 5.9E-13 2E-17 146.6 21.5 215 229-547 17-258 (297)
160 1pby_B Quinohemoprotein amine 99.5 6.1E-13 2.1E-17 150.2 21.4 269 225-549 2-312 (337)
161 3hfq_A Uncharacterized protein 99.5 3.7E-12 1.3E-16 145.3 27.8 274 123-507 14-316 (347)
162 3vgz_A Uncharacterized protein 99.5 5.5E-12 1.9E-16 143.6 28.1 155 109-293 46-216 (353)
163 3scy_A Hypothetical bacterial 99.5 1.5E-11 5.2E-16 141.2 31.8 299 173-527 25-360 (361)
164 4a5s_A Dipeptidyl peptidase 4 99.5 5.8E-12 2E-16 159.7 30.1 343 109-536 22-436 (740)
165 2oit_A Nucleoporin 214KDA; NH2 99.5 4.8E-13 1.6E-17 158.6 16.2 162 372-547 91-278 (434)
166 3pe7_A Oligogalacturonate lyas 99.4 2.4E-11 8.3E-16 140.5 27.0 281 218-548 41-383 (388)
167 1z68_A Fibroblast activation p 99.4 1.3E-12 4.3E-17 165.1 16.5 281 217-547 20-391 (719)
168 4a5s_A Dipeptidyl peptidase 4 99.4 1E-11 3.5E-16 157.5 22.7 294 159-547 19-398 (740)
169 3azo_A Aminopeptidase; POP fam 99.4 1.1E-11 3.8E-16 154.8 22.7 336 109-546 29-410 (662)
170 1jmx_B Amine dehydrogenase; ox 99.4 1.2E-11 4.1E-16 140.4 20.8 225 218-547 5-325 (349)
171 3pe7_A Oligogalacturonate lyas 99.4 4.4E-11 1.5E-15 138.4 25.2 147 109-292 41-225 (388)
172 1q7f_A NHL, brain tumor CG1071 99.4 2.5E-10 8.5E-15 126.4 30.0 237 210-550 27-283 (286)
173 3scy_A Hypothetical bacterial 99.3 1.2E-10 4E-15 133.7 26.5 271 224-547 13-337 (361)
174 4gz1_A Tyrosyl-DNA phosphodies 99.3 1.5E-11 5E-16 133.8 17.4 133 571-739 7-144 (256)
175 3c5m_A Oligogalacturonate lyas 99.3 2.7E-10 9.4E-15 131.6 23.9 288 215-547 38-382 (396)
176 1jof_A Carboxy-CIS,CIS-muconat 99.2 6.7E-10 2.3E-14 128.0 24.3 251 212-511 39-344 (365)
177 2oiz_A Aromatic amine dehydrog 99.2 8.4E-10 2.9E-14 127.2 24.5 297 113-527 13-356 (361)
178 1q7f_A NHL, brain tumor CG1071 99.2 2.7E-09 9.1E-14 118.0 26.9 235 158-508 31-280 (286)
179 1jof_A Carboxy-CIS,CIS-muconat 99.2 2.3E-09 7.8E-14 123.6 27.3 280 226-547 4-341 (365)
180 3fvz_A Peptidyl-glycine alpha- 99.2 1.1E-09 3.9E-14 124.2 23.9 247 210-509 21-323 (329)
181 4fva_A 5'-tyrosyl-DNA phosphod 99.2 1.9E-10 6.4E-15 125.0 16.4 134 570-739 10-148 (256)
182 3e5z_A Putative gluconolactona 99.2 5E-09 1.7E-13 116.6 28.4 247 210-511 25-289 (296)
183 3azo_A Aminopeptidase; POP fam 99.2 3.9E-09 1.3E-13 131.6 28.0 294 208-545 19-365 (662)
184 4f1h_A Tyrosyl-DNA phosphodies 99.2 4.3E-10 1.5E-14 120.8 16.7 131 573-739 3-138 (250)
185 4gew_A 5'-tyrosyl-DNA phosphod 99.1 4.6E-10 1.6E-14 129.1 16.3 135 569-739 115-254 (362)
186 3teb_A Endonuclease/exonucleas 99.1 9.6E-10 3.3E-14 120.5 17.7 46 694-739 120-165 (266)
187 2gop_A Trilobed protease; beta 99.1 4.9E-09 1.7E-13 119.1 24.2 251 213-546 59-330 (347)
188 3fvz_A Peptidyl-glycine alpha- 99.1 4.3E-09 1.5E-13 119.5 23.6 244 108-409 28-318 (329)
189 2bkl_A Prolyl endopeptidase; m 99.1 4.2E-09 1.4E-13 132.4 25.6 150 112-291 76-260 (695)
190 2dg1_A DRP35, lactonase; beta 99.1 1.4E-08 4.6E-13 114.9 26.6 274 109-507 11-315 (333)
191 1ako_A Exonuclease III; AP-end 99.0 5.3E-10 1.8E-14 122.7 11.8 128 575-739 2-136 (268)
192 2oiz_A Aromatic amine dehydrog 99.0 1.4E-08 4.8E-13 116.9 24.1 271 223-548 14-335 (361)
193 3c5m_A Oligogalacturonate lyas 99.0 3.1E-09 1E-13 122.8 18.1 275 159-509 38-385 (396)
194 2dg1_A DRP35, lactonase; beta 99.0 5.9E-09 2E-13 117.9 19.7 259 214-538 7-301 (333)
195 2z2n_A Virginiamycin B lyase; 99.0 5.4E-07 1.9E-11 99.3 33.6 273 211-546 13-294 (299)
196 2z2n_A Virginiamycin B lyase; 99.0 8E-07 2.7E-11 97.9 33.6 270 158-508 16-295 (299)
197 3no2_A Uncharacterized protein 99.0 5.8E-08 2E-12 107.4 23.3 212 223-534 4-230 (276)
198 3e5z_A Putative gluconolactona 98.9 1E-07 3.5E-12 105.9 24.2 238 256-538 21-278 (296)
199 1zwx_A SMCL, sphingomyelinase- 98.9 9.6E-09 3.3E-13 114.9 14.5 46 694-739 128-179 (301)
200 2xdw_A Prolyl endopeptidase; a 98.9 1.7E-07 5.9E-12 117.9 27.3 248 214-516 126-424 (710)
201 2gop_A Trilobed protease; beta 98.8 7.4E-08 2.5E-12 109.3 20.0 101 441-546 172-290 (347)
202 1rwi_B Serine/threonine-protei 98.8 2.1E-07 7.3E-12 101.3 22.8 235 214-509 25-265 (270)
203 3l1w_A Uncharacterized protein 98.8 5.2E-08 1.8E-12 106.2 17.7 133 575-739 2-152 (257)
204 3g6s_A Putative endonuclease/e 98.8 2.8E-08 9.7E-13 109.0 15.0 134 573-739 3-158 (267)
205 3i41_A Beta-hemolysin; beta to 98.8 5.2E-08 1.8E-12 110.1 17.4 47 693-739 146-198 (317)
206 2bkl_A Prolyl endopeptidase; m 98.8 1.4E-07 4.7E-12 118.5 21.8 278 222-548 77-398 (695)
207 1yr2_A Prolyl oligopeptidase; 98.8 2.7E-07 9.2E-12 116.8 24.3 158 111-293 114-304 (741)
208 3dsm_A Uncharacterized protein 98.8 2.3E-06 7.8E-11 96.9 29.0 239 215-516 46-310 (328)
209 3no2_A Uncharacterized protein 98.8 2.8E-07 9.6E-12 101.8 20.5 207 114-387 4-226 (276)
210 1qks_A Cytochrome CD1 nitrite 98.8 8.2E-06 2.8E-10 99.3 34.7 314 112-477 164-547 (567)
211 2xdw_A Prolyl endopeptidase; a 98.7 6.7E-07 2.3E-11 112.6 25.5 251 260-549 122-416 (710)
212 2qc5_A Streptogramin B lactona 98.7 1.2E-05 4E-10 88.5 32.4 272 211-544 18-297 (300)
213 1pjx_A Dfpase, DIISOPROPYLFLUO 98.7 4.3E-06 1.5E-10 93.0 28.5 244 211-508 16-299 (314)
214 1rwi_B Serine/threonine-protei 98.7 6.4E-07 2.2E-11 97.5 20.8 232 264-549 25-266 (270)
215 3mpr_A Putative endonuclease/e 98.7 2.5E-07 8.6E-12 103.4 16.7 136 571-739 4-162 (298)
216 1qks_A Cytochrome CD1 nitrite 98.7 4.9E-06 1.7E-10 101.3 29.2 270 222-548 165-478 (567)
217 2ddr_A Sphingomyelin phosphodi 98.7 4.1E-07 1.4E-11 101.7 18.0 46 694-739 128-179 (306)
218 2qc5_A Streptogramin B lactona 98.6 2.1E-05 7.3E-10 86.3 31.3 268 158-506 21-298 (300)
219 3dsm_A Uncharacterized protein 98.6 1.9E-06 6.4E-11 97.6 23.1 275 123-477 15-310 (328)
220 3hxj_A Pyrrolo-quinoline quino 98.6 1.2E-06 4E-11 98.4 21.3 106 442-547 217-324 (330)
221 2mad_H Methylamine dehydrogena 98.6 3.7E-05 1.3E-09 88.6 33.1 240 217-513 70-356 (373)
222 3dr2_A Exported gluconolactona 98.6 7.1E-06 2.4E-10 91.6 26.0 241 211-502 43-301 (305)
223 2jc4_A Exodeoxyribonuclease II 98.6 5.8E-08 2E-12 105.5 7.6 125 575-738 2-130 (256)
224 1pjx_A Dfpase, DIISOPROPYLFLUO 98.5 3E-06 1E-10 94.3 20.9 237 109-407 23-293 (314)
225 3q7m_A Lipoprotein YFGL, BAMB; 98.5 3.5E-05 1.2E-09 88.5 27.9 261 223-544 102-375 (376)
226 3hrp_A Uncharacterized protein 98.5 2.2E-05 7.4E-10 91.8 26.0 244 211-506 129-408 (409)
227 1yr2_A Prolyl oligopeptidase; 98.5 4.2E-06 1.4E-10 105.8 21.5 245 213-547 163-441 (741)
228 3g4e_A Regucalcin; six bladed 98.4 5.9E-05 2E-09 83.7 27.9 236 215-497 15-261 (297)
229 4a2l_A BT_4663, two-component 98.4 0.00065 2.2E-08 86.4 40.9 359 109-546 93-479 (795)
230 2j63_A AP-endonuclease; base e 98.4 1.4E-06 4.6E-11 102.9 14.7 39 572-614 148-190 (467)
231 2jc5_A Exodeoxyribonuclease; h 98.4 1.2E-07 3.9E-12 103.3 5.0 37 574-614 2-39 (259)
232 1vyb_A ORF2 contains A reverse 98.4 1.3E-06 4.6E-11 93.4 13.2 112 572-723 6-121 (238)
233 2o3h_A DNA-(apurinic or apyrim 98.4 2.1E-07 7.3E-12 103.0 6.1 41 571-615 26-67 (285)
234 3sjl_D Methylamine dehydrogena 98.4 5.2E-05 1.8E-09 86.9 25.3 272 221-548 41-364 (386)
235 2qe8_A Uncharacterized protein 98.3 2.5E-05 8.4E-10 88.9 21.5 268 213-544 17-318 (343)
236 2voa_A AF_EXO, XTHA, exodeoxyr 98.3 3E-06 1E-10 92.0 13.1 37 574-614 2-38 (257)
237 3iuj_A Prolyl endopeptidase; h 98.3 2.3E-05 7.7E-10 98.3 22.8 247 211-515 127-412 (693)
238 1xip_A Nucleoporin NUP159; bet 98.3 8.1E-06 2.8E-10 94.0 16.6 76 453-534 139-231 (388)
239 1wdu_A TRAS1 ORF2P; four-layer 98.3 1.3E-06 4.3E-11 94.5 9.3 120 572-737 18-142 (245)
240 4a2l_A BT_4663, two-component 98.3 0.0028 9.6E-08 80.5 41.8 356 109-542 268-655 (795)
241 2mad_H Methylamine dehydrogena 98.3 0.00043 1.5E-08 79.6 30.9 272 221-549 29-352 (373)
242 2ghs_A AGR_C_1268P; regucalcin 98.3 0.00025 8.7E-09 79.8 28.2 233 215-498 51-292 (326)
243 3dr2_A Exported gluconolactona 98.3 1.8E-05 6.1E-10 88.3 17.8 213 109-387 50-290 (305)
244 1xip_A Nucleoporin NUP159; bet 98.2 8.8E-06 3E-10 93.7 15.5 176 158-387 39-227 (388)
245 3g4e_A Regucalcin; six bladed 98.2 0.00033 1.1E-08 77.6 28.1 215 263-527 13-249 (297)
246 1hd7_A DNA-(apurinic or apyrim 98.2 7E-07 2.4E-11 100.7 5.8 132 571-739 59-196 (318)
247 2ghs_A AGR_C_1268P; regucalcin 98.2 5.6E-05 1.9E-09 85.3 21.2 218 109-387 54-285 (326)
248 3q7m_A Lipoprotein YFGL, BAMB; 98.2 0.00029 9.8E-09 80.8 27.5 312 114-505 52-375 (376)
249 3v9f_A Two-component system se 98.2 0.0055 1.9E-07 77.6 41.9 347 158-542 259-652 (781)
250 3v9f_A Two-component system se 98.2 0.0024 8.3E-08 80.9 38.2 335 158-544 212-608 (781)
251 3hrp_A Uncharacterized protein 98.2 0.00022 7.4E-09 83.3 26.0 231 263-545 131-408 (409)
252 1yiq_A Quinohemoprotein alcoho 98.1 0.00026 9E-09 88.3 24.7 80 459-538 454-540 (689)
253 3g91_A MTH0212, exodeoxyribonu 98.1 5.3E-06 1.8E-10 90.7 8.3 37 574-614 4-41 (265)
254 3iuj_A Prolyl endopeptidase; h 98.0 0.00024 8E-09 89.0 23.8 244 158-477 130-413 (693)
255 3sjl_D Methylamine dehydrogena 98.0 0.00075 2.6E-08 77.3 25.3 141 111-292 40-208 (386)
256 3c75_H MADH, methylamine dehyd 98.0 0.00071 2.4E-08 78.8 25.5 266 222-549 82-404 (426)
257 2hz6_A Endoplasmic reticulum t 98.0 8.4E-06 2.9E-10 93.9 8.3 61 223-293 8-69 (369)
258 3hxj_A Pyrrolo-quinoline quino 98.0 4.6E-05 1.6E-09 85.2 14.1 249 224-545 30-282 (330)
259 3c75_H MADH, methylamine dehyd 98.0 0.00025 8.5E-09 82.6 19.9 263 175-514 99-409 (426)
260 1kb0_A Quinohemoprotein alcoho 97.8 0.0024 8.2E-08 79.4 25.3 46 447-492 484-534 (677)
261 2qe8_A Uncharacterized protein 97.8 0.00045 1.5E-08 78.3 17.3 261 109-407 22-315 (343)
262 2hz6_A Endoplasmic reticulum t 97.7 1.2E-05 4.1E-10 92.6 3.4 171 350-548 16-193 (369)
263 1kb0_A Quinohemoprotein alcoho 97.6 0.0034 1.2E-07 78.1 23.7 99 452-551 329-511 (677)
264 1yiq_A Quinohemoprotein alcoho 97.6 0.0051 1.8E-07 76.6 24.8 53 498-551 454-509 (689)
265 1mda_H Methylamine dehydrogena 97.6 0.005 1.7E-07 70.3 22.3 73 445-518 269-357 (368)
266 2fp8_A Strictosidine synthase; 97.6 0.0061 2.1E-07 68.1 22.8 239 213-508 19-313 (322)
267 2ys4_A Hydrocephalus-inducing 97.5 0.00034 1.2E-08 66.6 9.5 89 954-1089 28-116 (122)
268 4b8c_D Glucose-repressible alc 97.5 1.6E-05 5.5E-10 99.9 -0.1 32 708-739 546-577 (727)
269 1npe_A Nidogen, entactin; glyc 97.4 0.041 1.4E-06 59.3 26.4 247 225-527 2-259 (267)
270 2e6j_A Hydin protein; PAPD, st 97.3 0.00029 9.8E-09 66.0 6.3 63 958-1039 16-78 (112)
271 1mda_H Methylamine dehydrogena 97.2 0.0094 3.2E-07 68.0 18.2 230 212-479 66-357 (368)
272 2a40_B Deoxyribonuclease-1; WA 97.1 0.00061 2.1E-08 74.0 7.7 27 697-723 111-140 (260)
273 1fwx_A Nitrous oxide reductase 97.1 0.005 1.7E-07 73.7 14.9 144 353-510 254-433 (595)
274 1npe_A Nidogen, entactin; glyc 97.0 0.18 6E-06 54.2 26.2 210 109-385 41-262 (267)
275 1kv9_A Type II quinohemoprotei 96.9 0.08 2.7E-06 65.5 24.4 62 457-518 435-499 (668)
276 3ott_A Two-component system se 96.8 1.9 6.6E-05 53.8 36.5 103 440-544 324-445 (758)
277 1kv9_A Type II quinohemoprotei 96.7 0.091 3.1E-06 65.1 23.5 53 498-551 437-492 (668)
278 3v64_C Agrin; beta propeller, 96.7 0.76 2.6E-05 51.7 29.1 250 214-526 35-294 (349)
279 2p4o_A Hypothetical protein; p 96.7 0.15 5.2E-06 56.1 22.5 70 213-292 32-104 (306)
280 3v65_B Low-density lipoprotein 96.6 0.62 2.1E-05 53.2 28.2 249 216-527 80-338 (386)
281 2ei9_A Non-LTR retrotransposon 96.5 0.0015 5E-08 70.1 4.5 37 573-613 7-43 (240)
282 2ad6_A Methanol dehydrogenase 96.5 0.5 1.7E-05 57.2 27.3 59 458-516 442-503 (571)
283 3ei3_A DNA damage-binding prot 96.5 3.9 0.00013 53.5 38.0 91 452-544 846-952 (1158)
284 3ott_A Two-component system se 96.5 1.7 5.8E-05 54.3 33.0 186 158-387 233-432 (758)
285 1k3i_A Galactose oxidase precu 96.4 0.16 5.6E-06 62.6 23.0 70 217-292 190-274 (656)
286 2ece_A 462AA long hypothetical 96.4 0.28 9.6E-06 56.7 23.0 131 352-496 227-399 (462)
287 1flg_A Protein (quinoprotein e 96.4 0.59 2E-05 56.6 27.3 86 458-543 464-557 (582)
288 3nol_A Glutamine cyclotransfer 96.4 0.15 5.2E-06 54.6 19.2 174 158-387 44-238 (262)
289 2iwa_A Glutamine cyclotransfer 96.4 0.3 1E-05 52.8 21.7 194 264-508 22-237 (266)
290 2xbg_A YCF48-like protein; pho 96.3 1.8 6.2E-05 48.0 30.9 103 440-544 205-319 (327)
291 2ad6_A Methanol dehydrogenase 96.2 1.2 4.1E-05 53.8 28.5 97 452-549 318-496 (571)
292 3p5b_L Low density lipoprotein 96.2 1.9 6.4E-05 49.4 28.6 244 226-527 85-340 (400)
293 1w6s_A Methanol dehydrogenase 96.1 1.1 3.8E-05 54.3 27.2 58 458-516 451-512 (599)
294 2fp8_A Strictosidine synthase; 96.1 0.44 1.5E-05 52.7 21.9 104 442-546 187-312 (322)
295 1m1s_A WR4; structural genomic 96.0 0.035 1.2E-06 51.5 10.2 61 957-1039 11-72 (116)
296 2ece_A 462AA long hypothetical 95.9 0.2 7E-06 57.9 18.3 152 113-291 93-288 (462)
297 1ijq_A LDL receptor, low-densi 95.9 2.7 9.2E-05 46.3 29.8 225 234-515 10-246 (316)
298 1k3i_A Galactose oxidase precu 95.9 0.58 2E-05 57.6 24.0 70 216-292 246-323 (656)
299 1row_A SSP-19, MSP-domain prot 95.8 0.035 1.2E-06 51.1 9.1 61 957-1039 3-64 (109)
300 4hw6_A Hypothetical protein, I 95.7 2.2 7.4E-05 49.5 26.5 61 211-280 137-199 (433)
301 3nol_A Glutamine cyclotransfer 95.6 0.9 3.1E-05 48.6 20.8 183 263-497 43-244 (262)
302 3tc9_A Hypothetical hydrolase; 95.6 1.3 4.5E-05 51.3 24.2 151 212-407 136-295 (430)
303 1w6s_A Methanol dehydrogenase 95.6 3.9 0.00013 49.5 28.9 52 498-550 452-506 (599)
304 3nok_A Glutaminyl cyclase; bet 95.5 1.4 4.8E-05 47.2 21.4 173 158-387 56-248 (268)
305 2iwa_A Glutamine cyclotransfer 95.4 1.1 3.8E-05 48.2 20.8 191 215-467 23-235 (266)
306 1flg_A Protein (quinoprotein e 95.4 4.9 0.00017 48.4 29.0 52 498-550 465-519 (582)
307 1msp_A MSP, major sperm protei 95.3 0.19 6.5E-06 47.6 12.6 63 957-1041 9-76 (126)
308 3v65_B Low-density lipoprotein 95.3 4 0.00014 46.4 26.4 101 165-292 86-190 (386)
309 1z9l_A Vesicle-associated memb 95.2 0.068 2.3E-06 50.9 9.3 62 957-1040 11-77 (128)
310 3sov_A LRP-6, low-density lipo 95.2 4.2 0.00014 44.9 25.5 225 233-515 12-246 (318)
311 2p4o_A Hypothetical protein; p 95.2 3.7 0.00013 44.7 25.0 217 109-387 37-271 (306)
312 1fwx_A Nitrous oxide reductase 95.1 0.82 2.8E-05 54.7 20.2 179 350-547 109-361 (595)
313 2cri_A Vesicle-associated memb 94.9 0.085 2.9E-06 51.5 9.2 62 957-1040 15-81 (147)
314 3ngq_A CCR4-NOT transcription 94.8 0.026 9E-07 64.8 6.1 31 709-739 195-225 (398)
315 1sr4_B CDT B, cytolethal diste 94.8 0.036 1.2E-06 59.2 6.7 37 574-613 5-46 (261)
316 1n7d_A LDL receptor, low-densi 94.7 0.34 1.2E-05 60.2 16.4 146 344-514 466-621 (699)
317 3m0c_C LDL receptor, low-densi 94.7 5.9 0.0002 49.6 27.6 240 216-514 388-639 (791)
318 2xe4_A Oligopeptidase B; hydro 94.6 1.3 4.4E-05 55.5 21.3 69 214-292 175-256 (751)
319 1ijq_A LDL receptor, low-densi 94.5 7.1 0.00024 42.8 25.4 106 440-545 120-236 (316)
320 3nok_A Glutaminyl cyclase; bet 94.2 2 6.8E-05 46.0 18.5 113 215-371 57-173 (268)
321 1wic_A Hypothetical protein ri 94.2 0.1 3.4E-06 51.3 7.8 62 957-1040 19-85 (152)
322 3mbr_X Glutamine cyclotransfer 94.2 4.9 0.00017 42.4 21.3 185 260-496 16-222 (243)
323 3p5b_L Low density lipoprotein 93.9 11 0.00038 42.8 26.0 213 109-381 117-339 (400)
324 3mbr_X Glutamine cyclotransfer 93.8 3 0.0001 44.0 19.0 163 215-387 23-217 (243)
325 3kya_A Putative phosphatase; s 93.8 13 0.00046 43.5 27.0 64 211-283 137-214 (496)
326 4a0p_A LRP6, LRP-6, low-densit 93.8 16 0.00055 44.3 42.5 352 109-527 42-440 (628)
327 2xbg_A YCF48-like protein; pho 93.7 1.7 5.9E-05 48.2 17.9 150 109-290 168-320 (327)
328 3sov_A LRP-6, low-density lipo 93.4 11 0.00039 41.3 24.9 102 169-293 7-111 (318)
329 3v64_C Agrin; beta propeller, 93.4 12 0.00041 41.6 27.1 109 158-292 74-191 (349)
330 2f1n_A CDT B, cytolethal diste 93.2 0.2 6.9E-06 53.0 8.4 38 696-739 130-167 (262)
331 3tc9_A Hypothetical hydrolase; 92.7 5.3 0.00018 46.2 20.7 149 108-292 141-301 (430)
332 3s94_A LRP-6, low-density lipo 92.4 24 0.00082 42.7 40.3 353 109-527 45-443 (619)
333 3m0c_C LDL receptor, low-densi 91.9 12 0.00042 46.7 23.8 108 159-292 473-589 (791)
334 2xe4_A Oligopeptidase B; hydro 91.9 3.1 0.0001 52.0 18.5 106 441-546 272-397 (751)
335 3qqz_A Putative uncharacterize 91.1 18 0.00061 38.4 21.3 66 440-506 173-251 (255)
336 2qsv_A Uncharacterized protein 91.0 0.37 1.3E-05 50.5 7.3 59 958-1039 9-67 (220)
337 1n7d_A LDL receptor, low-densi 90.7 1.3 4.6E-05 54.8 13.3 106 161-292 457-571 (699)
338 2xzh_A Clathrin heavy chain 1; 90.7 23 0.00077 39.1 20.9 214 111-380 74-308 (365)
339 3pbp_A Nucleoporin NUP82; beta 88.7 11 0.00039 42.9 17.4 122 159-286 68-206 (452)
340 3amr_A 3-phytase; beta-propell 88.2 36 0.0012 37.8 21.5 58 223-291 39-107 (355)
341 4hw6_A Hypothetical protein, I 86.1 36 0.0012 39.1 20.6 130 353-507 162-303 (433)
342 2p9w_A MAL S 1 allergenic prot 85.9 17 0.00059 40.1 16.5 156 109-292 18-215 (334)
343 3amr_A 3-phytase; beta-propell 85.5 30 0.001 38.4 18.3 182 350-546 47-262 (355)
344 1bpo_A Protein (clathrin); cla 85.2 59 0.002 37.3 21.1 145 111-292 73-235 (494)
345 2qsv_A Uncharacterized protein 83.3 2.1 7.1E-05 44.7 7.4 60 958-1040 125-184 (220)
346 3sre_A PON1, serum paraoxonase 83.2 46 0.0016 37.1 18.9 72 216-292 53-148 (355)
347 3qqz_A Putative uncharacterize 81.3 59 0.002 34.4 22.8 70 213-292 27-100 (255)
348 3pbp_A Nucleoporin NUP82; beta 80.7 34 0.0012 39.1 16.4 110 350-468 38-157 (452)
349 2g8s_A Glucose/sorbosone dehyd 80.2 67 0.0023 35.5 19.1 24 109-133 23-47 (353)
350 2p9w_A MAL S 1 allergenic prot 78.3 26 0.00088 38.6 14.2 68 441-508 138-215 (334)
351 3s94_A LRP-6, low-density lipo 78.0 1.3E+02 0.0043 36.3 38.8 97 439-535 434-538 (619)
352 3sre_A PON1, serum paraoxonase 73.2 23 0.00077 39.6 12.4 71 212-291 164-251 (355)
353 4a0p_A LRP6, LRP-6, low-densit 66.6 2.2E+02 0.0076 34.2 46.6 96 439-534 431-535 (628)
354 1xi4_A Clathrin heavy chain; a 66.2 95 0.0032 41.0 17.0 145 111-292 73-235 (1630)
355 1tl2_A L10, protein (tachylect 66.0 49 0.0017 34.3 11.9 150 108-284 45-202 (236)
356 2ism_A Putative oxidoreductase 65.1 1.7E+02 0.0057 32.2 20.6 105 158-279 32-152 (352)
357 3das_A Putative oxidoreductase 59.4 1.1E+02 0.0036 34.0 14.3 157 109-280 37-219 (347)
358 2xzh_A Clathrin heavy chain 1; 58.5 2.2E+02 0.0075 31.4 24.7 86 268-387 72-165 (365)
359 1xi4_A Clathrin heavy chain; a 57.4 2.4E+02 0.008 37.5 18.3 190 269-508 72-289 (1630)
360 2ism_A Putative oxidoreductase 55.8 2.4E+02 0.0081 30.9 23.3 26 264-289 32-57 (352)
361 1bpo_A Protein (clathrin); cla 55.3 2.9E+02 0.0098 31.7 27.9 229 267-546 70-330 (494)
362 3a9g_A Putative uncharacterize 55.0 2.5E+02 0.0084 30.9 23.9 108 158-280 30-153 (354)
363 3ei3_A DNA damage-binding prot 54.2 4.7E+02 0.016 33.9 38.1 108 438-547 884-999 (1158)
364 4ep8_B Urease subunit beta; al 53.2 25 0.00085 31.0 5.9 70 956-1038 5-82 (101)
365 3a9g_A Putative uncharacterize 52.8 83 0.0028 34.8 12.2 69 440-508 29-114 (354)
366 1tl2_A L10, protein (tachylect 44.1 29 0.00098 36.0 5.8 97 441-541 42-157 (236)
367 2xn4_A Kelch-like protein 2; s 43.7 3.1E+02 0.01 28.7 18.6 60 450-509 204-277 (302)
368 4ac7_B Urease subunit beta; hy 43.6 26 0.00088 32.2 4.7 73 953-1038 7-88 (126)
369 4ubp_B Protein (urease (chain 43.6 26 0.00088 32.2 4.7 73 953-1038 7-88 (126)
370 3sbq_A Nitrous-oxide reductase 43.1 1.1E+02 0.0039 36.0 11.2 139 354-509 299-479 (638)
371 2vpj_A Kelch-like protein 12; 39.7 3.5E+02 0.012 28.2 21.6 60 450-509 206-279 (301)
372 3ii7_A Kelch-like protein 7; p 38.5 3.7E+02 0.013 28.1 20.6 60 450-509 200-273 (306)
373 2xn4_A Kelch-like protein 2; s 33.4 4.3E+02 0.015 27.5 15.7 79 460-538 173-262 (302)
374 2be1_A Serine/threonine-protei 33.4 50 0.0017 36.5 6.1 97 451-548 11-131 (339)
375 3isy_A Bsupi, intracellular pr 31.3 2E+02 0.0067 26.5 8.7 91 968-1079 18-112 (120)
376 3f7f_A Nucleoporin NUP120; nuc 27.8 2.8E+02 0.0097 33.7 11.7 138 215-383 224-380 (729)
377 2vpj_A Kelch-like protein 12; 27.7 5.3E+02 0.018 26.7 18.9 89 450-538 159-264 (301)
378 3pt1_A UPF0364 protein YMR027W 27.2 11 0.00037 43.6 -0.7 18 779-796 373-390 (471)
379 1cru_A Protein (soluble quinop 26.1 7.6E+02 0.026 27.9 16.2 161 109-292 32-259 (454)
380 1yk0_E Atrial natriuretic fact 24.1 28 0.00096 22.6 1.1 15 1089-1103 1-15 (26)
381 3kya_A Putative phosphatase; s 23.8 8.8E+02 0.03 27.9 25.2 111 440-551 310-479 (496)
382 2yka_B ORF57 protein, 52 kDa i 29.6 17 0.00057 23.0 0.0 7 867-873 9-15 (26)
383 1jdp_H CNP, C-type natriuretic 23.8 23 0.0008 23.0 0.7 16 1088-1103 4-19 (26)
384 1yew_A Particulate methane mon 23.1 5.2E+02 0.018 28.4 11.3 58 1017-1089 313-375 (382)
385 1yk1_E Natriuretic peptides B; 23.1 30 0.001 22.5 1.1 15 1089-1103 1-15 (26)
386 1sr4_B CDT B, cytolethal diste 21.4 56 0.0019 34.6 3.5 36 696-737 121-156 (261)
387 3ii7_A Kelch-like protein 7; p 20.7 7.2E+02 0.025 25.7 16.7 79 460-538 169-258 (306)
388 1wp5_A Topoisomerase IV; broke 20.4 8.2E+02 0.028 26.3 20.3 163 113-292 3-174 (323)
No 1
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=100.00 E-value=5.2e-88 Score=742.80 Aligned_cols=307 Identities=30% Similarity=0.607 Sum_probs=277.6
Q ss_pred ccccccccceEEEEEEcCCCCCCchhhhhhhcCCCCCccEEEEeeeecccccchhhhhhhhhhhcCCCCcchhhHHHHHh
Q 043350 565 VYLRRDDVRILVGTWNVGQGRASHESLLSWLGSVSSDVGIVAVGLQEVEMGAGFLAMSAAKETVGLEGSAIGQWWQDTIG 644 (1133)
Q Consensus 565 eyt~~~~lrI~v~TWNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 644 (1133)
.|+..++++|+++|||||+..| .++|.+||.....+||||||||||+++++..+. ..+++..+.|.++|+
T Consensus 1 ~yt~~~~~~i~v~TwNvng~~~-~~~l~~wL~~~~~~pDI~viGlQE~~l~~~~~~---------~~~~~~~~~W~~~i~ 70 (313)
T 3mtc_A 1 MYTYIQNFRFFAGTYNVNGQSP-KECLRLWLSNGIQAPDVYCVGFQELDLSKEAFF---------FHDTPKEEEWFKAVS 70 (313)
T ss_dssp CCEEEEEEEEEEEEEECTTCCC-CSCTHHHHSSSCCCCSEEEEEEECSCCSHHHHT---------TCCCHHHHHHHHHHH
T ss_pred CCceeeccEEEEEEEEcCCccC-chhHHHHhcccCCCCCeEEEEEEecccchhhhc---------ccCcchHHHHHHHHH
Confidence 3888999999999999998776 578999999766789999999999998754322 123445678999999
Q ss_pred hhcCCCCcEEEEeeeecceEEEEEEEecccccccCceeecccccccccccccceeEEEEEEEcCeEEEEEecccccChHH
Q 043350 645 KALDEGTTFERMGSRQLAGLLISFWVRKNLRTHVGDVDAAAVPCGFGRAIGNKGGVGLRIRVYDRTICFVNCHLAAHLEA 724 (1133)
Q Consensus 645 ~~l~~~~~y~~v~~~~l~g~~l~v~~~~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~~r~~~~~~~~~fvn~Hlaa~~~~ 724 (1133)
++|+++..|++|++.||+||+|+||||+++.++|++|++++|+||++|+|||||||+|||.+++|+|||||||||||+++
T Consensus 71 ~~L~~~~~Y~~v~s~~lvGl~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~~ 150 (313)
T 3mtc_A 71 EGLHPDAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEE 150 (313)
T ss_dssp HHSCTTSCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEEEEEETTEEEEEEEEECCCSGGG
T ss_pred HhcCCCCCEEEEEEechhhhhhhhhhhhhhhhhcceeEeeeecccccccccCCceEEEEEEECCcEEEEEeeccCCCchH
Confidence 99988788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCccCCCCCcccccccccccccccccccCCcccCCCCCCCCCCCCccEEEEEccCCccccCCChHHH
Q 043350 725 VNRRNADYDHIYRNMVFSRSTSTLNSASAGVSTAVNMMKTSNTTTTLNTEETKPDLAEADMVIFFGDFNYRLFGISYDEA 804 (1133)
Q Consensus 725 ~~~Rn~d~~~i~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~GDlNyRi~~~~~~~~ 804 (1133)
+++||+||.+|+++|.|...... .....|.+||++||||||||||++++++++
T Consensus 151 ~~~Rn~d~~~I~~~l~f~~~~~~---------------------------~~~~~i~~~d~vfw~GDLNyRi~~~~~~~v 203 (313)
T 3mtc_A 151 YERRNQDYKDICSRMQFCQPDPS---------------------------LPPLTISNHDVILWLGDLNYRIEELDVEKV 203 (313)
T ss_dssp HHHHHHHHHHHHHHCCBCCSCSS---------------------------SCCBCTTSSSEEEEEEECCCCBCSSCHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCCCc---------------------------cCCccccCCceEEEeccccccccCCCHHHH
Confidence 99999999999999999754321 011246799999999999999987899999
Q ss_pred HHhhccCChhHhhccchhHHHHHcCCcccCcccccccCCCCccccCCCCCCCCccCCCCcccccccceeeeecCCCCCCc
Q 043350 805 RDFVSQRCFDWLREKDQLRAEMKAGKVFQGMREAIIRFPPTYKFERHRPGLAGYDSGEKKRIPAWCDRIIYRDSRSTPVS 884 (1133)
Q Consensus 805 ~~~~~~~~~~~Ll~~DqL~~~~~~~~~f~g~~E~~i~F~PTYK~~~~~~~~~~yd~s~k~R~PswcDRIL~~~~~~~~~~ 884 (1133)
+++|++++|+.||++|||++||++|++|.||.|++|+|||||||++|+ +.||+|+|+|+|||||||||++..
T Consensus 204 ~~~i~~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~~I~F~PTYKyd~~s---~~ydts~k~R~PsWcDRIL~~~~~----- 275 (313)
T 3mtc_A 204 KKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGS---DDWDTSEKCRAPAWCDRILWKGKN----- 275 (313)
T ss_dssp HHHHHTTCHHHHHTTBHHHHHHHTTSSCTTCBCCCCCSCCCBCBCTTS---SSBCCSTTCCCCBCCEEEEEEESS-----
T ss_pred HHHHhcCCHHHHHHhHHHHHHHHcCCccCCcccCCcCcCCCccCcCCC---cccccccCEecccccceEEEecCC-----
Confidence 999999999999999999999999999999999999999999999854 689999999999999999999743
Q ss_pred cCCCCCcceeeeeeeeeccccCCCCCccccceEEEEEeecC
Q 043350 885 ECSLECPVVSSILLYDAVMDVTESDHKPVHCKFHVKIAHVD 925 (1133)
Q Consensus 885 ~~~~~~~~~~~~~~Y~s~~~~~~SDHkPV~a~f~~~~~~~~ 925 (1133)
..++.|++++++++||||||+|.|.+++++|.
T Consensus 276 ---------i~~~~Y~s~~~~~~SDHrPV~a~f~~~~~~~~ 307 (313)
T 3mtc_A 276 ---------ITQLSYQSHMALKTSDHKPVSSVFDIGVRVVA 307 (313)
T ss_dssp ---------EEEEEEEECTTCCSSSSCCEEEEEEEEEEEEC
T ss_pred ---------eEEEeeeeccCccCCCccCeEEEEEEEEEEee
Confidence 24689999999999999999999999999874
No 2
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=100.00 E-value=3.9e-82 Score=698.25 Aligned_cols=292 Identities=29% Similarity=0.530 Sum_probs=244.8
Q ss_pred cccccceEEEEEEcCCCCCCchhhhhhhcCC-----------CCCccEEEEeeeecccccchhhhhhhhhhhcCCCCcch
Q 043350 568 RRDDVRILVGTWNVGQGRASHESLLSWLGSV-----------SSDVGIVAVGLQEVEMGAGFLAMSAAKETVGLEGSAIG 636 (1133)
Q Consensus 568 ~~~~lrI~v~TWNv~~~~~~~~~l~~wl~~~-----------~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1133)
....++|+++|||||+.. |+++|.+||.+. ..+||||||||||+.+ ..
T Consensus 4 ~~~~i~i~vgTwNv~g~~-p~~~L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~~--------------------~~ 62 (316)
T 4a9c_A 4 EPDMISVFIGTWNMGSVP-PPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSV--------------------GD 62 (316)
T ss_dssp --CEEEEEEEEEECTTSC-CCSCCHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCCS--------------------CH
T ss_pred CCCeEEEEEEEeEcCCcC-CCcchhHhhcccccccCcccccccCCCcEEEEecccccc--------------------ch
Confidence 467899999999999765 567999999752 2358999999999853 13
Q ss_pred hhHHHHHhhhcCC--CCcEEEEeeeecceEEEEEEEecccccccCceeecccccccccccccceeEEEEEEEcCeEEEEE
Q 043350 637 QWWQDTIGKALDE--GTTFERMGSRQLAGLLISFWVRKNLRTHVGDVDAAAVPCGFGRAIGNKGGVGLRIRVYDRTICFV 714 (1133)
Q Consensus 637 ~~w~~~~~~~l~~--~~~y~~v~~~~l~g~~l~v~~~~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~~r~~~~~~~~~fv 714 (1133)
+.|.+.|+++|++ ...|.+|+++||+||+|+||+|+++.++|++|++++|+||++|+|||||||+|||.+++++||||
T Consensus 63 ~~W~~~i~~~L~~~~~~~Y~~v~s~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~~FV 142 (316)
T 4a9c_A 63 REWLDLLRGGLKELTDLDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFV 142 (316)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEEEEEETTEEEEEEECGGGGGGEEEEEEEEEEEC------CEEEEEEEEEETTEEEEEE
T ss_pred hHHHHHHHHHhccccCCCEEEEEeeeehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCCceEEEEEEECCcEEEEE
Confidence 6799999999974 35799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccChHHHHHHHHHHHHHHHhCccCCCCCcccccccccccccccccccCCcccCCCCCCCCCCCCccEEEEEccCCc
Q 043350 715 NCHLAAHLEAVNRRNADYDHIYRNMVFSRSTSTLNSASAGVSTAVNMMKTSNTTTTLNTEETKPDLAEADMVIFFGDFNY 794 (1133)
Q Consensus 715 n~Hlaa~~~~~~~Rn~d~~~i~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~GDlNy 794 (1133)
|||||||++++++||+||.+|+++|.|...... ......+||||||||||||
T Consensus 143 n~HLaAg~~~~~~Rn~d~~~I~~~l~f~~~~~~----------------------------~~d~~~~~d~vfw~GDLNy 194 (316)
T 4a9c_A 143 NCHLTSGNEKTARRNQNYLDILRLLSLGDRQLN----------------------------AFDISLRFTHLFWFGDLNY 194 (316)
T ss_dssp EEECCCSTTCHHHHHHHHHHHHHHCCC-----------------------------------CCTTTTSSEEEEEEECCC
T ss_pred EeccccCchHHHHHHHHHHHHHHhCCCCCCCcC----------------------------ccccCCcCCeEEEcCCccC
Confidence 999999999999999999999999999642110 0012356899999999999
Q ss_pred cccCCChHHHHHhhccCChhHhhccchhHHHHHcCCcccCcccccccCCCCccccCCCCCCCCcc------CCCCccccc
Q 043350 795 RLFGISYDEARDFVSQRCFDWLREKDQLRAEMKAGKVFQGMREAIIRFPPTYKFERHRPGLAGYD------SGEKKRIPA 868 (1133)
Q Consensus 795 Ri~~~~~~~~~~~~~~~~~~~Ll~~DqL~~~~~~~~~f~g~~E~~i~F~PTYK~~~~~~~~~~yd------~s~k~R~Ps 868 (1133)
||+. ++++++++|++++|+.||++|||++||++|++|.||.|++|+|||||||++++. +.|+ +++|+|+||
T Consensus 195 Ri~~-~~~~v~~~i~~~~~~~Ll~~DQL~~e~~~g~~F~gf~E~~i~F~PTYKy~~~s~--~~y~~~~~~~~~~k~R~Pa 271 (316)
T 4a9c_A 195 RLDM-DIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSR--DTYAWHKQKPTGVRTNVPS 271 (316)
T ss_dssp CBSS-CHHHHHHHHHTTCCHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTCS--SCBCCC--------CCCCB
T ss_pred CcCC-CHHHHHHHHhcccHHHHhccChHHHHHhcCCcccccccCCcccCCCccccCCCc--ccccccccccccccccCCc
Confidence 9985 999999999999999999999999999999999999999999999999999764 3453 678899999
Q ss_pred ccceeeeecCCCCCCccCCCCCcceeeeeeeeeccccCCCCCccccceEEEEEe
Q 043350 869 WCDRIIYRDSRSTPVSECSLECPVVSSILLYDAVMDVTESDHKPVHCKFHVKIA 922 (1133)
Q Consensus 869 wcDRIL~~~~~~~~~~~~~~~~~~~~~~~~Y~s~~~~~~SDHkPV~a~f~~~~~ 922 (1133)
|||||||++.+... ..++.|++++++++||||||+|.|.|+|.
T Consensus 272 WcDRIL~~~~~~~~-----------i~~~~Y~s~~~~~~SDHrPV~a~f~v~V~ 314 (316)
T 4a9c_A 272 WCDRILWKSYPETH-----------IICNSYGCTDDIVTSDHSPVFGTFEVGVT 314 (316)
T ss_dssp CCEEEEEEECTTCC-----------EEEEEEEECSSCCSSSSCCEEEEEEEECC
T ss_pred ccceEEeccCCCCc-----------eEEeeecccCCcCCCCcccEEEEEEEEEE
Confidence 99999999864321 24689999999999999999999999874
No 3
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=100.00 E-value=5.1e-78 Score=683.50 Aligned_cols=331 Identities=31% Similarity=0.577 Sum_probs=292.8
Q ss_pred CCchhhhHHHHhhhhcccccccccceEEEEEEcCCCCCCchhhhhhhcCC-CCCccEEEEeeeec-ccccchhhhhhhhh
Q 043350 549 SPLDNIIRSEIAAKEAVYLRRDDVRILVGTWNVGQGRASHESLLSWLGSV-SSDVGIVAVGLQEV-EMGAGFLAMSAAKE 626 (1133)
Q Consensus 549 ~~ld~~i~~eL~~r~~eyt~~~~lrI~v~TWNv~~~~~~~~~l~~wl~~~-~~~~di~vig~QE~-~~~~~~~~~~~~~~ 626 (1133)
+|+++++..+|..++.+|+...+++|+++||||++..| ..+|.+||... ..+||||||||||+ +|+++.+..
T Consensus 2 ~p~~~~~~~~l~~r~~e~~~~~~~~i~v~TwNv~g~~~-~~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~----- 75 (347)
T 1i9z_A 2 DPIHEYVNHELRKRENEFSEHKNVKIFVASYNLNGCSA-TTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVIS----- 75 (347)
T ss_dssp CHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEECTTCCC-CSCCHHHHSCSSSCCCSEEEEEEECSSCCC-----C-----
T ss_pred CchHHHHHHHHHHHHHhcCCCCCcEEEEEeEecCCCCC-chhHHHHhccccCCCCCEEEEEeEEeecCchhhhcc-----
Confidence 57889999999999999999999999999999998776 56799999853 36799999999998 677654321
Q ss_pred hhcCCCCcchhhHHHHHhhhcC----CCCcEEEEeeeecceEEEEEEEecccccccCceeecccccccccccccceeEEE
Q 043350 627 TVGLEGSAIGQWWQDTIGKALD----EGTTFERMGSRQLAGLLISFWVRKNLRTHVGDVDAAAVPCGFGRAIGNKGGVGL 702 (1133)
Q Consensus 627 ~~~~~~~~~~~~w~~~~~~~l~----~~~~y~~v~~~~l~g~~l~v~~~~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~~ 702 (1133)
.++...+.|.+.|.++|+ .+..|.+|++.||+|++|+||+|+++.++|++|++++|+||++|++||||||++
T Consensus 76 ----~~~~~~~~w~~~i~~~L~~~~~~~~~Y~~v~s~~l~g~~L~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gnKGav~v 151 (347)
T 1i9z_A 76 ----ADPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAI 151 (347)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHTCCSSCCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEEE
T ss_pred ----cCchhHHHHHHHHHHHHhhcccCCCceeEEEEeeccceEEEEEEehHhhhhccceeeeeEeccCCCccCCCceEEE
Confidence 122345789999999996 357899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCeEEEEEecccccChHHHHHHHHHHHHHHHhCccCCCCCcccccccccccccccccccCCcccCCCCCCCCCCCC
Q 043350 703 RIRVYDRTICFVNCHLAAHLEAVNRRNADYDHIYRNMVFSRSTSTLNSASAGVSTAVNMMKTSNTTTTLNTEETKPDLAE 782 (1133)
Q Consensus 703 r~~~~~~~~~fvn~Hlaa~~~~~~~Rn~d~~~i~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1133)
||.+++++|||||||||||++++++||+||.+|+++|.|... ..+.+
T Consensus 152 r~~~~~~~l~fvn~HLaa~~~~~~~R~~d~~~I~~~l~f~~~---------------------------------~~i~~ 198 (347)
T 1i9z_A 152 RFDYEDTGLCFITSHLAAGYTNYDERDHDYRTIASGLRFRRG---------------------------------RSIFN 198 (347)
T ss_dssp EEEETTEEEEEEEEECCCCSSCHHHHHHHHHHHHHHCCCGGG---------------------------------CCTTS
T ss_pred EEEECCeEEEEEEecCCCCCccHHHHHHHHHHHHHhhccCcc---------------------------------ccccc
Confidence 999999999999999999999999999999999999988632 12568
Q ss_pred ccEEEEEccCCccccCCChHHHHHhhccCChhHhhccchhHHHHHcCCcccCcccccccCCCCccccCCCCCCCCccCCC
Q 043350 783 ADMVIFFGDFNYRLFGISYDEARDFVSQRCFDWLREKDQLRAEMKAGKVFQGMREAIIRFPPTYKFERHRPGLAGYDSGE 862 (1133)
Q Consensus 783 ~d~~f~~GDlNyRi~~~~~~~~~~~~~~~~~~~Ll~~DqL~~~~~~~~~f~g~~E~~i~F~PTYK~~~~~~~~~~yd~s~ 862 (1133)
||++||||||||||+. +.++++++|.+++|+.||++|||++||++|++|.||.|++|+|+|||||+.++ +.||+|+
T Consensus 199 ~d~v~~~GDlNyRi~~-~~~~v~~~i~~~~~~~Ll~~DqL~~~~~~~~~f~~f~E~~i~F~PTYK~~~~~---~~yd~s~ 274 (347)
T 1i9z_A 199 HDYVVWFGDFNYRISL-TYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGT---DIYDTSD 274 (347)
T ss_dssp SSEEEEEEECCCCBSS-CHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTS---SCBCCST
T ss_pred CccEEEecccccccCC-CHHHHHHHHhhccHHHhhcccHHHHHHhcCCcccccccCCCCCCCCcccCCCC---ccccccc
Confidence 8999999999999995 99999999999999999999999999999999999999999999999999864 6899999
Q ss_pred CcccccccceeeeecCCCCCCccCCCCCcceeeeeeeeeccccCCCCCccccceEEEEEeecCHHHHHHHHHHHHHhccc
Q 043350 863 KKRIPAWCDRIIYRDSRSTPVSECSLECPVVSSILLYDAVMDVTESDHKPVHCKFHVKIAHVDRSERRRVFGEILKNNEN 942 (1133)
Q Consensus 863 k~R~PswcDRIL~~~~~~~~~~~~~~~~~~~~~~~~Y~s~~~~~~SDHkPV~a~f~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1133)
|+|+|||||||||++. ..++.|.+++ ++.||||||+|.|.++++.+|+++|+++++||+++..+
T Consensus 275 k~R~PsWcDRIL~~~~---------------l~~~~Y~~~~-~~~SDH~PV~a~f~~~v~~~~~~~~~~~~~~~~~~~~~ 338 (347)
T 1i9z_A 275 KHRVPAWTDRILYRGE---------------LVPHSYQSVP-LYYSDHRPIYATYEANIVKVDREKKKILFEELYNQRKQ 338 (347)
T ss_dssp TCCCCBCCEEEEEESS---------------CEEEEEEECC-CCSSSBCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred cccCCcccceEEEeCC---------------EEEEEEEecC-ccCCCcCCceeEEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999861 1358999997 99999999999999999999999999999999987443
No 4
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.4e-76 Score=672.44 Aligned_cols=305 Identities=26% Similarity=0.461 Sum_probs=266.5
Q ss_pred cccccccccceEEEEEEcCCCCCCchhhhhhhcCC--CCCccEEEEeeeecccccchhhhhhhhhhhcCCCCcchhhHHH
Q 043350 564 AVYLRRDDVRILVGTWNVGQGRASHESLLSWLGSV--SSDVGIVAVGLQEVEMGAGFLAMSAAKETVGLEGSAIGQWWQD 641 (1133)
Q Consensus 564 ~eyt~~~~lrI~v~TWNv~~~~~~~~~l~~wl~~~--~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 641 (1133)
.+|+...+++++++|||||+.++++++|.+||... ..+||||||||||++.. .+.|.+
T Consensus 18 ~~~~~~~~l~i~v~TwNv~g~~~~~~~L~~~l~~~~~~~~pDI~viGlQEi~~~--------------------~~~W~~ 77 (357)
T 2xsw_A 18 ARYFPDRNVALFVATWNMQGQKELPPSLDEFLLPAEADYAQDLYVIGVQEGCSD--------------------RREWET 77 (357)
T ss_dssp HHHCTTCEEEEEEEEEECTTCSSCCSCCHHHHSCTTCCSCCSEEEEEEESCCSC--------------------HHHHHH
T ss_pred hhcCCCCCceEEEEEEecCCCCCCcccHHHHhccccccCCCCEEEEEeeeccch--------------------HHHHHH
Confidence 46788899999999999998776678999999642 34689999999998531 257999
Q ss_pred HHhhhcCCCCcEEEEeeeecceEEEEEEEecccccccCceeecccccccccccccceeEEEEEEEcCeEEEEEecccccC
Q 043350 642 TIGKALDEGTTFERMGSRQLAGLLISFWVRKNLRTHVGDVDAAAVPCGFGRAIGNKGGVGLRIRVYDRTICFVNCHLAAH 721 (1133)
Q Consensus 642 ~~~~~l~~~~~y~~v~~~~l~g~~l~v~~~~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~~r~~~~~~~~~fvn~Hlaa~ 721 (1133)
.|+++|+. .|+++.+.+|+|++|+||+|+++.++|++|++++|+||+||+|||||||+|||.+++++|||||||||||
T Consensus 78 ~l~~~L~~--~Y~~v~s~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~ 155 (357)
T 2xsw_A 78 RLQETLGP--HYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSG 155 (357)
T ss_dssp HHHHHHCT--TEEEEEEEEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCCS
T ss_pred HHHHHhCC--cccchhhhhhhhEEEEEEEchHHhhcCceeEecccccccccccccccEEEEEEEECCeEEEEEEEccCCC
Confidence 99999964 6899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhCccCCCCCcccccccccccccccccccCCcccCCCCCCCCCCCCccEEEEEccCCccccCCCh
Q 043350 722 LEAVNRRNADYDHIYRNMVFSRSTSTLNSASAGVSTAVNMMKTSNTTTTLNTEETKPDLAEADMVIFFGDFNYRLFGISY 801 (1133)
Q Consensus 722 ~~~~~~Rn~d~~~i~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~GDlNyRi~~~~~ 801 (1133)
++++++||+||.+|+++|.|+......++ .+ ......+.+||++||||||||||+. ++
T Consensus 156 ~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~-----------~~----------~~~~~~~~~~d~vfw~GDlNyRi~~-~~ 213 (357)
T 2xsw_A 156 DGKVAERLLDYTRTVQALVLPRNVPDTNP-----------YR----------SSAADVTTRFDEVFWFGDFNFRLSG-GR 213 (357)
T ss_dssp TTCHHHHHHHHHHHHHHCCCCSSSCCSSG-----------GG----------CBTTBGGGSSSEEEEEEECCCCBSS-CH
T ss_pred CchHHHHHHHHHHHHHHhccccccccccc-----------cc----------ccccccccccceEEEecccCccccc-ch
Confidence 99999999999999999999754322100 00 0011234679999999999999996 89
Q ss_pred HHHHHhhc---cCChhHhhccchhHHHHHcCCcccCcccccccCCCCccccCCCCCCCCccCCCCcccccccceeeeecC
Q 043350 802 DEARDFVS---QRCFDWLREKDQLRAEMKAGKVFQGMREAIIRFPPTYKFERHRPGLAGYDSGEKKRIPAWCDRIIYRDS 878 (1133)
Q Consensus 802 ~~~~~~~~---~~~~~~Ll~~DqL~~~~~~~~~f~g~~E~~i~F~PTYK~~~~~~~~~~yd~s~k~R~PswcDRIL~~~~ 878 (1133)
+++++++. +++|+.|+++|||++||++|++|.||.|++|+|||||||+.++ +.||+|+|+|+|||||||||++.
T Consensus 214 ~~v~~~i~~~~~~~~~~Ll~~DQL~~~~~~g~~F~gf~E~~I~F~PTYKy~~~t---~~Ydts~k~R~PaWcDRIL~~~~ 290 (357)
T 2xsw_A 214 TVVDALLCQGLVVDVPALLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFDIGK---DTYDSTSKQRTPSYTDRVLYRSR 290 (357)
T ss_dssp HHHHHHHC---CCCHHHHHTTBHHHHHHHHTSSSTTCBCCCCCSCCCBCBCTTS---SSBCCSTTCCCCBCCEEEEEEES
T ss_pred HHHHHHHhhcchhhHHHHHhcChhHHHHhccccccCccccCCCCCCCccccCCC---ccccccCCCCCCcccceEEEecC
Confidence 99999996 5789999999999999999999999999999999999999865 68999999999999999999986
Q ss_pred CCCCCccCCCCCcceeeeeeeeeccccCCCCCccccceEEEEEeecCH
Q 043350 879 RSTPVSECSLECPVVSSILLYDAVMDVTESDHKPVHCKFHVKIAHVDR 926 (1133)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~~Y~s~~~~~~SDHkPV~a~f~~~~~~~~~ 926 (1133)
.... ..++.|+++++++.||||||+|.|.++++.+++
T Consensus 291 ~~~~-----------i~~~~Y~s~~~~~~SDHrPV~a~f~v~v~~~~~ 327 (357)
T 2xsw_A 291 HKGD-----------ICPVSYSSCPGIKTSDHRPVYGLFRVKVRPGRD 327 (357)
T ss_dssp STTS-----------EEEEEEEECTTCCSSSSCCEEEEEEEECCCCCS
T ss_pred CCCc-----------eEEEEeEecccccCCCcCCceeEEEEEEecCCc
Confidence 4321 246899999999999999999999999987654
No 5
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=100.00 E-value=3.9e-60 Score=528.26 Aligned_cols=277 Identities=21% Similarity=0.373 Sum_probs=239.0
Q ss_pred cccccceEEEEEEcCCCCCCchhhhhhhcCC-CCCccEEEEeeeecccccchhhhhhhhhhhcCCCCcchhhHHHHHhhh
Q 043350 568 RRDDVRILVGTWNVGQGRASHESLLSWLGSV-SSDVGIVAVGLQEVEMGAGFLAMSAAKETVGLEGSAIGQWWQDTIGKA 646 (1133)
Q Consensus 568 ~~~~lrI~v~TWNv~~~~~~~~~l~~wl~~~-~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 646 (1133)
+..+++++++||||++..++ ++|.+|+... ..+||||||||||++++... ....+.|.+.|.++
T Consensus 3 ~~~~~~i~V~T~Nv~~~~~~-~~l~~wl~~~~~~~pDI~viglQEv~~~~~~--------------~~~~~~w~~~l~~~ 67 (282)
T 2imq_X 3 PPAQLSVHTVSWNSGHERAP-TNLEELLGLNSGETPDVIAVAVQGFGFQTDK--------------PQQGPACVKNFQSL 67 (282)
T ss_dssp CCSEEEEEEEEEEEETCCCC-SCCHHHHTCTTSCCCSEEEEEEEESCTTTCT--------------TCCHHHHHHHHHHH
T ss_pred CCCCcEEEEEEEeCCCCcCc-hhHHHHhcccccCCCCEEEEEeeeecccccc--------------chhhHHHHHHHHHh
Confidence 34578999999999876654 6799999742 36799999999999864321 02356899999999
Q ss_pred cCCCCcEEEEee--eecceEEEEEEEecccccccCceeecccccccccccccceeEEEEEEEcCeEEEEEecccccChHH
Q 043350 647 LDEGTTFERMGS--RQLAGLLISFWVRKNLRTHVGDVDAAAVPCGFGRAIGNKGGVGLRIRVYDRTICFVNCHLAAHLEA 724 (1133)
Q Consensus 647 l~~~~~y~~v~~--~~l~g~~l~v~~~~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~~r~~~~~~~~~fvn~Hlaa~~~~ 724 (1133)
|+ ++.|.+|++ .+|+|++++||+|+++.+.|+++++ +|++|.+||||||++||.+++++||||||||+|+.++
T Consensus 68 L~-~~~Y~~v~~~~~~~~G~~l~vf~k~~~~~~i~~~~~----~~~~g~~g~kGav~~r~~~~~~~~~fvn~HL~~~~~~ 142 (282)
T 2imq_X 68 LT-SKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETI----IVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVT 142 (282)
T ss_dssp HH-HTTEEEEEEEECSSEEEEEEEEGGGCCTTTCCCEEE----EEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCC
T ss_pred cC-CCceEEEEeccCceeEEEEEEEEccccCccceeeee----ccccccccCCceEEEEEEECCEEEEEEEECCCCCCch
Confidence 96 467999999 8999999999999999998888865 5677889999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHhCccCCCCCcccccccccccccccccccCCcccCCCCCCCCCCCCccEEEEEccCCccccCCChHHH
Q 043350 725 VNRRNADYDHIYRNMVFSRSTSTLNSASAGVSTAVNMMKTSNTTTTLNTEETKPDLAEADMVIFFGDFNYRLFGISYDEA 804 (1133)
Q Consensus 725 ~~~Rn~d~~~i~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~GDlNyRi~~~~~~~~ 804 (1133)
+++||+|+..|++++.+ +.++|++|||||||||++. +.+++
T Consensus 143 ~~~R~~~~~~I~~~~~~--------------------------------------~~~~~~vi~~GDfN~r~~~-~~~~~ 183 (282)
T 2imq_X 143 STNTKYAYDTRLDYSKK--------------------------------------DDPSDFLFWIGDLNVRVET-NATHA 183 (282)
T ss_dssp TTSSSSSCCGGGCTTSS--------------------------------------SSCCSEEEEEEECSCCBCS-CHHHH
T ss_pred HHHHHHHHHHHHHhhhc--------------------------------------cCccceEEEecccccccCC-CHHHH
Confidence 89999999998876532 2457899999999999996 89999
Q ss_pred HHhhccCChhHhhccchhHHHHHcCCcccCcccccccCCCCccccCCCCCCCCccCCCCcccccccceeeeecCCCCCCc
Q 043350 805 RDFVSQRCFDWLREKDQLRAEMKAGKVFQGMREAIIRFPPTYKFERHRPGLAGYDSGEKKRIPAWCDRIIYRDSRSTPVS 884 (1133)
Q Consensus 805 ~~~~~~~~~~~Ll~~DqL~~~~~~~~~f~g~~E~~i~F~PTYK~~~~~~~~~~yd~s~k~R~PswcDRIL~~~~~~~~~~ 884 (1133)
++++++++|+.|+++|||+++++ +++|.||.|++|+|+|||||+.++ +.||+ +|+|||||||||++.....
T Consensus 184 ~~~i~~~~~~~l~~~DqL~~~~~-~~~f~~f~e~~i~f~PTYk~~~~~---~~y~~---~R~Psw~DrIl~~~~~~~~-- 254 (282)
T 2imq_X 184 KSLVDQNNIDGLMAFDQLKKAKE-QKLFDGWTEPQVTFKPTYKFKPNT---DEYDL---SATPSWTDRALYKSGTGKT-- 254 (282)
T ss_dssp HHHHHTTCHHHHHTTBTHHHHHH-TTSSTTCBCCCCCSCCCBCBCTTS---SCBCT---TSCCBCCEEEEEECSSSCC--
T ss_pred HHHHhhccHHHHhhhhHHHHhhc-cccccccccCCcCCCCCccccCCC---ccccc---cCCccccceEEEecCCCCc--
Confidence 99999999999999999999999 999999999999999999999865 67984 6999999999999754221
Q ss_pred cCCCCCcceeeeeeeeeccccCCCCCccccceEEEEE
Q 043350 885 ECSLECPVVSSILLYDAVMDVTESDHKPVHCKFHVKI 921 (1133)
Q Consensus 885 ~~~~~~~~~~~~~~Y~s~~~~~~SDHkPV~a~f~~~~ 921 (1133)
.+++.|.+++++..||||||+|.|.+++
T Consensus 255 ---------~~~~~y~~~~~~~~SDH~PV~a~f~~~~ 282 (282)
T 2imq_X 255 ---------IQPLSYNSLTNYKQTEHRPVLAKFRVTL 282 (282)
T ss_dssp ---------EEEEEEEECTTCCSSSSCCEEEEEEEEC
T ss_pred ---------eEeeEecCCCCCCCCCcCCeEEEEEEEC
Confidence 2468999999999999999999999864
No 6
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.2e-42 Score=427.91 Aligned_cols=440 Identities=17% Similarity=0.257 Sum_probs=356.8
Q ss_pred CCCCCcccCCCCcccc-ccCCCCcccc--cCCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeecc
Q 043350 71 SDDDLFSNNSNVITTS-GVPVNEDYVC--PGPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRP 147 (1133)
Q Consensus 71 s~d~~~~~s~s~~~~~-~~~p~~~~~~--~~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~ 147 (1133)
|+|+..+++++.+.+. +|...+.... .+|...+.. +.|+|++++||+|+.|++|+|||.. ++. +..+.+
T Consensus 25 spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~---l~fspdg~~las~~~d~~i~vWd~~----~~~-~~~~~~ 96 (577)
T 2ymu_A 25 SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWG---VAFSPDGQTIASASDDKTVKLWNRN----GQL-LQTLTG 96 (577)
T ss_dssp CTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEE---EEECTTSSEEEEEETTSCEEEEETT----SCE-EEEECC
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEE---EEECCCCCEEEEEeCCCEEEEEECC----CCE-EEEEEC
Confidence 4578888888877777 7876665443 377776665 8899999999999999999999976 666 889999
Q ss_pred CCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCC-CCcCcCCCcccc-----C-----------------CCC
Q 043350 148 HPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDS-YEPGAGIGGRVR-----R-----------------GDE 201 (1133)
Q Consensus 148 H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~-~~~~~gh~~~v~-----~-----------------g~~ 201 (1133)
|.. .|.+++ ++++++++ +.|+.+++|+.... .....++...+. + ...
T Consensus 97 ~~~-------~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (577)
T 2ymu_A 97 HSS-------SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 169 (577)
T ss_dssp CSS-------CEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred CCC-------CEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccc
Confidence 998 999999 99999998 88999999997652 112222222111 0 000
Q ss_pred CCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEe
Q 043350 202 DAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGG 280 (1133)
Q Consensus 202 ~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs 280 (1133)
.........|...|.+++++|++.+|++|+.|+.|++|+... +.+..+.+|...|.+++|+|+|. |++++
T Consensus 170 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~---------~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 240 (577)
T 2ymu_A 170 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---------QLLQTLTGHSSSVRGVAFSPDGQTIASAS 240 (577)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS---------CEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred eeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCC---------cEEEEEecCCCCEEEEEECCCCCEEEEEe
Confidence 111123345788999999999999999999999999999876 66677888988999999999988 99999
Q ss_pred CCCcEEEEeCCCC-----------ceeeEeCCCCceEEEEeecce--EEEccCce---------eeeccccCCCCCeEEE
Q 043350 281 EGGVIKIWPWESI-----------EKSLSLKPEEKHMAALLVERS--FIDLRAQV---------TVNGACSISSTEIKCM 338 (1133)
Q Consensus 281 ~DgtI~iWdl~~~-----------~~~l~~~~~~~~l~s~~~d~s--~~d~~~~~---------~v~~~~~~~~~~~~~l 338 (1133)
.|++|++|+.... +..+.+.+++..+++++.++. +|+..... .+..+...++....+.
T Consensus 241 ~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t 320 (577)
T 2ymu_A 241 DDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIAS 320 (577)
T ss_dssp TTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEE
Confidence 9999999987542 345667788888888877766 55543221 2333334445555666
Q ss_pred EecCCceEEEe-------------------------------cCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCc
Q 043350 339 LSDHARARVWC-------------------------------AQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQ 387 (1133)
Q Consensus 339 ~S~d~~i~vws-------------------------------s~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~ 387 (1133)
++.++.+++|+ +.|+.|++|| .+++++..+..|...|++++|+|++++
T Consensus 321 ~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~~ 399 (577)
T 2ymu_A 321 ASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQT 399 (577)
T ss_dssp EETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE-TTCCEEEEEECCSSCEEEEEECTTSSC
T ss_pred EeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEc-CCCCEEEEecCCCCCeEEEEECCCCCE
Confidence 66666666664 3467799999 467888999999999999999999999
Q ss_pred cccccceEEEEeeCCCCcccccc--ccccceeeccCCceEEEEEecCCc-----------------------ccCCCCCE
Q 043350 388 PVEDEMKVKFVSSNKKEKPHGFL--QRSRNAIMGAADAVRRVATRGAGA-----------------------FVDDTKRT 442 (1133)
Q Consensus 388 ~~e~e~~v~lasgs~Dg~i~~~~--~~~~~~~~~~~~~V~~v~~~p~g~-----------------------~~~h~~~V 442 (1133)
|++++.|+.|+.|+ .+....+.+|...|..++|+|++. +.+|...|
T Consensus 400 ---------l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v 470 (577)
T 2ymu_A 400 ---------IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 470 (577)
T ss_dssp ---------EEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCE
T ss_pred ---------EEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCE
Confidence 99999999998444 455667789999999999999875 45788899
Q ss_pred EEEEECCCC-eEEEEecCCeEEEEeCCCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCCCcceeeecccc
Q 043350 443 EAMVLTADG-MIWSGCTNGLLVQWDGNGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGNLTASWIAHSS 519 (1133)
Q Consensus 443 ~sl~~spdg-~L~sgs~DG~I~vWd~~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~~l~~~~~H~~ 519 (1133)
.+++|+|++ +|++++.|++|++|+.+++++..+.+|...|++ |+|+|++|++|+.||+|+|||..++++..+.+|.+
T Consensus 471 ~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~ 550 (577)
T 2ymu_A 471 RGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 550 (577)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSS
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCC
Confidence 999999999 999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred CeEEeeec--ccceeeecccCCeeecc
Q 043350 520 PVLKLAVG--VDHIYSLAAHGGIRGWT 544 (1133)
Q Consensus 520 ~V~~l~fs--~~~L~S~s~Dg~I~lW~ 544 (1133)
.|++|+|+ +++|+|+|.|++|++||
T Consensus 551 ~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 551 SVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 99999999 88999999999999997
No 7
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.4e-40 Score=403.06 Aligned_cols=407 Identities=17% Similarity=0.260 Sum_probs=335.7
Q ss_pred ccCCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--e
Q 043350 96 CPGPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--G 172 (1133)
Q Consensus 96 ~~~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s 172 (1133)
..||...+.+ +.|+|||++||+|+.|++|+|||.. ++. +.++.+|.. .|++++ +|++++|+ +
T Consensus 12 L~GH~~~V~~---~a~spdg~~las~~~d~~v~iWd~~----~~~-~~~l~gh~~-------~V~~l~fspdg~~las~~ 76 (577)
T 2ymu_A 12 LEAHSSSVRG---VAFSPDGQTIASASDDKTVKLWNRN----GQL-LQTLTGHSS-------SVWGVAFSPDGQTIASAS 76 (577)
T ss_dssp ECCCSSCEEE---EEECTTSSCEEEEETTSEEEEECTT----SCE-EEEEECCSS-------CEEEEEECTTSSEEEEEE
T ss_pred ECCCCCcEEE---EEECCCCCEEEEEeCCCEEEEEECC----CCE-EEEEeCCCC-------CEEEEEECCCCCEEEEEe
Confidence 3478777777 8899999999999999999999975 666 889999999 999999 99999999 8
Q ss_pred cCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC------
Q 043350 173 QECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLD------ 246 (1133)
Q Consensus 173 ~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~------ 246 (1133)
.|++|+|||+.+.. ......|..+|.+++|+|++++|++++.|+.+++|+......
T Consensus 77 ~d~~i~vWd~~~~~------------------~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~ 138 (577)
T 2ymu_A 77 DDKTVKLWNRNGQL------------------LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH 138 (577)
T ss_dssp TTSCEEEEETTSCE------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCC
T ss_pred CCCEEEEEECCCCE------------------EEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCC
Confidence 89999999975421 223557888999999999999999999999999999753210
Q ss_pred ----------CC----------------CCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCC------
Q 043350 247 ----------DA----------------NNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESI------ 293 (1133)
Q Consensus 247 ----------~~----------------~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~------ 293 (1133)
.+ ............|...|.+++|+|+++ |++++.|++|++|+....
T Consensus 139 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~ 218 (577)
T 2ymu_A 139 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 218 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEE
T ss_pred CCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEe
Confidence 00 000112234457889999999999999 999999999999997642
Q ss_pred -----ceeeEeCCCCceEEEEeecce--EEEccCce---------eeeccccCCCCCeEEEEecCCceEEEe--------
Q 043350 294 -----EKSLSLKPEEKHMAALLVERS--FIDLRAQV---------TVNGACSISSTEIKCMLSDHARARVWC-------- 349 (1133)
Q Consensus 294 -----~~~l~~~~~~~~l~s~~~d~s--~~d~~~~~---------~v~~~~~~~~~~~~~l~S~d~~i~vws-------- 349 (1133)
+..+.+.+++..+++++.++. +|+..... .+..+...+++...+.++.++.+++|.
T Consensus 219 ~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~ 298 (577)
T 2ymu_A 219 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQT 298 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEE
T ss_pred cCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEE
Confidence 456778888989999888876 56543221 233334444555556666666666664
Q ss_pred -----------------------cCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCcc
Q 043350 350 -----------------------AQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKP 406 (1133)
Q Consensus 350 -----------------------s~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i 406 (1133)
+.|+.|++||.. +..+..+.+|...+.+++|+|++.+ +++|+.|+++
T Consensus 299 ~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~---------l~~~~~dg~v 368 (577)
T 2ymu_A 299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQT---------IASASDDKTV 368 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSE---------EEEEETTSEE
T ss_pred EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCE---------EEEEeCCCEE
Confidence 346788899964 4556778888888999999999998 9999999999
Q ss_pred ccc--cccccceeeccCCceEEEEEecCCc-----------------------ccCCCCCEEEEEECCCC-eEEEEecCC
Q 043350 407 HGF--LQRSRNAIMGAADAVRRVATRGAGA-----------------------FVDDTKRTEAMVLTADG-MIWSGCTNG 460 (1133)
Q Consensus 407 ~~~--~~~~~~~~~~~~~~V~~v~~~p~g~-----------------------~~~h~~~V~sl~~spdg-~L~sgs~DG 460 (1133)
+.| ..+....+.+|...|..++++|++. +.+|...|.+++|+|++ +|++++.|+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~ 448 (577)
T 2ymu_A 369 KLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDK 448 (577)
T ss_dssp EEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCC
Confidence 844 3455667788999999999999876 45688899999999999 999999999
Q ss_pred eEEEEeCCCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCCCcceeeeccccCeEEeeec--ccceeeecc
Q 043350 461 LLVQWDGNGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGNLTASWIAHSSPVLKLAVG--VDHIYSLAA 536 (1133)
Q Consensus 461 ~I~vWd~~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~~l~~~~~H~~~V~~l~fs--~~~L~S~s~ 536 (1133)
+|++|+.+++++..+..|...|.+ |+|++++|++++.|++|++||..++++..+.+|...|++|+|+ +++|++++.
T Consensus 449 ~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~ 528 (577)
T 2ymu_A 449 TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD 528 (577)
T ss_dssp EEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEET
T ss_pred EEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEEC
Confidence 999999999999999999999998 9999999999999999999999999999999999999999999 899999999
Q ss_pred cCCeeeccc
Q 043350 537 HGGIRGWTF 545 (1133)
Q Consensus 537 Dg~I~lW~l 545 (1133)
||.|++||.
T Consensus 529 dg~v~lwd~ 537 (577)
T 2ymu_A 529 DKTVKLWNR 537 (577)
T ss_dssp TSEEEEECT
T ss_pred cCEEEEEeC
Confidence 999999995
No 8
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.6e-39 Score=404.35 Aligned_cols=428 Identities=12% Similarity=0.126 Sum_probs=328.0
Q ss_pred CCCCCcccCCCCcccc-ccCCC---CcccccCCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCC-Ceeee
Q 043350 71 SDDDLFSNNSNVITTS-GVPVN---EDYVCPGPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRP-PCLEL 145 (1133)
Q Consensus 71 s~d~~~~~s~s~~~~~-~~~p~---~~~~~~~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~-~~~~l 145 (1133)
++|+..++.++. .+. +|.+. ......+|...+.. +.|+|+|++||+|+.||+|+|||... ++. ....+
T Consensus 27 spdg~~l~~~~~-~~v~l~~~~~~~~~~~~~~h~~~v~~---~~~spdg~~lasg~~d~~v~lWd~~~---~~~~~~~~~ 99 (611)
T 1nr0_A 27 TPAGDKIQYCNG-TSVYTVPVGSLTDTEIYTEHSHQTTV---AKTSPSGYYCASGDVHGNVRIWDTTQ---TTHILKTTI 99 (611)
T ss_dssp CTTSSEEEEEET-TEEEEEETTCSSCCEEECCCSSCEEE---EEECTTSSEEEEEETTSEEEEEESSS---TTCCEEEEE
T ss_pred CCCCCEEEeCCC-CEEEEecCCCcccCeEecCCCCceEE---EEECCCCcEEEEEeCCCCEEEeECCC---CcceeeEee
Confidence 567777776653 344 56543 23334478777666 88999999999999999999999852 222 24578
Q ss_pred ccCCCccccccceEEEEE-eCCCCeEE--ecC----CcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEE
Q 043350 146 RPHPLKETQAGRFLRNIA-CTDTQLWA--GQE----CGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCL 218 (1133)
Q Consensus 146 ~~H~~~~~~~g~~V~~v~-s~dg~lla--s~D----g~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~l 218 (1133)
.+|.. .|.+++ ++++++++ +.+ +.|++||....... +.+|..+|.++
T Consensus 100 ~~~~~-------~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~-------------------l~gh~~~v~~v 153 (611)
T 1nr0_A 100 PVFSG-------PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGN-------------------LTGQARAMNSV 153 (611)
T ss_dssp ECSSS-------CEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBC-------------------CCCCSSCEEEE
T ss_pred cccCC-------ceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcce-------------------ecCCCCCceEE
Confidence 88988 999999 99999998 433 47888886443332 34677799999
Q ss_pred EEeCCCC-EEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCC---
Q 043350 219 MVDCGNR-LVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESI--- 293 (1133)
Q Consensus 219 a~spd~~-~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~--- 293 (1133)
+|+|++. +|++|+.|++|++||... .+....+.+|.+.|++++|+|+|+ |+||+.|++|++||+.+.
T Consensus 154 ~f~p~~~~~l~s~s~D~~v~lwd~~~--------~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 154 DFKPSRPFRIISGSDDNTVAIFEGPP--------FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 225 (611)
T ss_dssp EECSSSSCEEEEEETTSCEEEEETTT--------BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred EECCCCCeEEEEEeCCCeEEEEECCC--------CeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEe
Confidence 9999986 699999999999999765 255668899999999999999999 999999999999997542
Q ss_pred ----------------ceeeEeCCCCceEEEEeecce--EEEccCceeeeccccCC-CCCeEEEEecCCceEEEecCCCc
Q 043350 294 ----------------EKSLSLKPEEKHMAALLVERS--FIDLRAQVTVNGACSIS-STEIKCMLSDHARARVWCAQPLS 354 (1133)
Q Consensus 294 ----------------~~~l~~~~~~~~l~s~~~d~s--~~d~~~~~~v~~~~~~~-~~~~~~l~S~d~~i~vwss~d~~ 354 (1133)
+..+.++|++..+++++.|+. +|++.+...+..+.... .......+.-++...+-.+.|+.
T Consensus 226 ~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~ 305 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 305 (611)
T ss_dssp EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCC
T ss_pred eeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCc
Confidence 345678899999999999988 89988766554442211 11111111113444444578999
Q ss_pred eeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccccccc---cee-eccCCceEEEEEe
Q 043350 355 FSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSR---NAI-MGAADAVRRVATR 430 (1133)
Q Consensus 355 I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~---~~~-~~~~~~V~~v~~~ 430 (1133)
+++||..++++...+.+|...|++++|+|++++ |++++.|++|+.|+.... ..+ .+|...|..++++
T Consensus 306 i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~---------l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s 376 (611)
T 1nr0_A 306 INFVNPELGSIDQVRYGHNKAITALSSSADGKT---------LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 376 (611)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECTTSSE---------EEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEEC
T ss_pred EEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE---------EEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEEC
Confidence 999999999988999999999999999999999 999999999996653321 111 3455555555554
Q ss_pred cCCcc---------------------------------------------------------------cCCCCCEEEEEE
Q 043350 431 GAGAF---------------------------------------------------------------VDDTKRTEAMVL 447 (1133)
Q Consensus 431 p~g~~---------------------------------------------------------------~~h~~~V~sl~~ 447 (1133)
+++.+ ..+...+.+++|
T Consensus 377 ~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~ 456 (611)
T 1nr0_A 377 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVAL 456 (611)
T ss_dssp TTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEE
T ss_pred CCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEE
Confidence 33220 012345789999
Q ss_pred CCCC-eEEEEecCCeEEEEeCCCCee---EEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCC--Cccee--eecc
Q 043350 448 TADG-MIWSGCTNGLLVQWDGNGNRV---SDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG--NLTAS--WIAH 517 (1133)
Q Consensus 448 spdg-~L~sgs~DG~I~vWd~~g~~l---~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g--~~l~~--~~~H 517 (1133)
+|+| +|++|+.||+|++|++.+..+ .. ..|...|++ |+|+|++|++++.|++|++||+.. +++.. +.+|
T Consensus 457 spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H 535 (611)
T 1nr0_A 457 SNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH 535 (611)
T ss_dssp CTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC
T ss_pred eCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeec
Confidence 9999 999999999999999965332 33 679999998 999999999999999999999973 44433 4569
Q ss_pred ccCeEEeeec--ccceeeecccCCeeeccccCCC
Q 043350 518 SSPVLKLAVG--VDHIYSLAAHGGIRGWTFTSPS 549 (1133)
Q Consensus 518 ~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s~~ 549 (1133)
...|++++|+ +++|+|+|.|++|++|++..+.
T Consensus 536 ~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 536 TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 9999999999 8899999999999999987643
No 9
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.3e-38 Score=391.57 Aligned_cols=424 Identities=12% Similarity=0.105 Sum_probs=318.4
Q ss_pred CCCCCcccCCCCcccc-ccCCCC---c--ccccCCCCCCCCCcccccCCCCCEEEEecCC----CeEEeccCCCCCCCCC
Q 043350 71 SDDDLFSNNSNVITTS-GVPVNE---D--YVCPGPDAADDQQQHKPFQPMVEFIGSGGGT----GIFKVPSRAAVHPGRP 140 (1133)
Q Consensus 71 s~d~~~~~s~s~~~~~-~~~p~~---~--~~~~~~~~~~~~~~~~~~~p~g~~lasgs~d----g~irlW~~~~~~~g~~ 140 (1133)
++|+..+++++.+.+. +|.... . ....+|..++.. +.|+|+|++|++++.+ +.|++|+. +..
T Consensus 68 spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~---v~fs~dg~~l~~~~~~~~~~~~v~~wd~-----~~~ 139 (611)
T 1nr0_A 68 SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKD---ISWDSESKRIAAVGEGRERFGHVFLFDT-----GTS 139 (611)
T ss_dssp CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEE---EEECTTSCEEEEEECCSSCSEEEEETTT-----CCB
T ss_pred CCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEE---EEECCCCCEEEEEECCCCceeEEEEeeC-----CCC
Confidence 5688899999988888 776531 1 122356655555 8899999999998865 58999984 333
Q ss_pred CeeeeccCCCccccccceEEEEE-eCCCC-eEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeE
Q 043350 141 PCLELRPHPLKETQAGRFLRNIA-CTDTQ-LWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTM 216 (1133)
Q Consensus 141 ~~~~l~~H~~~~~~~g~~V~~v~-s~dg~-lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~ 216 (1133)
...+.+|.. .|++++ +|++. +|+ +.|++|++||...... ...+.+|...|.
T Consensus 140 -~~~l~gh~~-------~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~-----------------~~~l~~H~~~V~ 194 (611)
T 1nr0_A 140 -NGNLTGQAR-------AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF-----------------KSTFGEHTKFVH 194 (611)
T ss_dssp -CBCCCCCSS-------CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE-----------------EEEECCCSSCEE
T ss_pred -cceecCCCC-------CceEEEECCCCCeEEEEEeCCCeEEEEECCCCeE-----------------eeeeccccCceE
Confidence 567889998 999999 99886 355 8999999999765211 123557888999
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCccccccc-------ccCCCCeEEEEEeeCCc-EEEEeCCCcEEEE
Q 043350 217 CLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSW-------QAHRGPVLAMIFSSQGD-LWSGGEGGVIKIW 288 (1133)
Q Consensus 217 ~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l-------~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iW 288 (1133)
|++|+|++++|++|+.|++|++||+..+. ....+ .+|.+.|++++|+|+|+ |+||+.|++|++|
T Consensus 195 ~v~fspdg~~las~s~D~~i~lwd~~~g~--------~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lW 266 (611)
T 1nr0_A 195 SVRYNPDGSLFASTGGDGTIVLYNGVDGT--------KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW 266 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCC--------EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEECCCCCEEEEEECCCcEEEEECCCCc--------EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 99999999999999999999999987522 22233 28999999999999999 9999999999999
Q ss_pred eCCCCc--eeeE-----------eCCCCceEEEEeecce--EEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCC
Q 043350 289 PWESIE--KSLS-----------LKPEEKHMAALLVERS--FIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPL 353 (1133)
Q Consensus 289 dl~~~~--~~l~-----------~~~~~~~l~s~~~d~s--~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~ 353 (1133)
|+.+.. ..+. ....+..+++++.++. +|+.........+..|...-..+..+.++...+-.+.|+
T Consensus 267 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~ 346 (611)
T 1nr0_A 267 NVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG 346 (611)
T ss_dssp ETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 998732 1111 1124456677777766 677665443333333333222333344555555558899
Q ss_pred ceeEeecCCCceeEEE-ecCCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccccccc------------------
Q 043350 354 SFSLWDARSKELLKVF-NIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSR------------------ 414 (1133)
Q Consensus 354 ~I~lWD~~tg~~l~~~-~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~------------------ 414 (1133)
+|++||+.+++....+ .+|...+.+++|++++ . +++++.|++++.|+....
T Consensus 347 ~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~-~---------l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~ 416 (611)
T 1nr0_A 347 HINSWDISTGISNRVFPDVHATMITGIKTTSKG-D---------LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLG 416 (611)
T ss_dssp CEEEEETTTCCEEECSSCSCSSCEEEEEECTTS-C---------EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEE
T ss_pred cEEEEECCCCceeeecccCCcceEEEEEECCCC-c---------EEEEEcCCceEEeecCCccccccceeeeecCCCCcE
Confidence 9999999999887766 5788889999999766 5 678888887763331100
Q ss_pred -------------------------ceeeccCCceEEEEEecCCc-------------------------ccCCCCCEEE
Q 043350 415 -------------------------NAIMGAADAVRRVATRGAGA-------------------------FVDDTKRTEA 444 (1133)
Q Consensus 415 -------------------------~~~~~~~~~V~~v~~~p~g~-------------------------~~~h~~~V~s 444 (1133)
.....+...+.+++++|+|. ..+|...|.+
T Consensus 417 ~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~ 496 (611)
T 1nr0_A 417 LAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITS 496 (611)
T ss_dssp EEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEE
T ss_pred EEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEE
Confidence 00011345577889998876 1247788999
Q ss_pred EEECCCC-eEEEEecCCeEEEEeCC--CCeeEE--EecCCcceeE--EecCCCEEEEEecCCeEEEEeCCC--Ccc-eee
Q 043350 445 MVLTADG-MIWSGCTNGLLVQWDGN--GNRVSD--ILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG--NLT-ASW 514 (1133)
Q Consensus 445 l~~spdg-~L~sgs~DG~I~vWd~~--g~~l~~--~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g--~~l-~~~ 514 (1133)
++|+|+| +|++++.|++|++|+.. ++++.. +..|...|++ |+|||++||+|+.|++|++||++. +.+ ..+
T Consensus 497 v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~ 576 (611)
T 1nr0_A 497 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 576 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET
T ss_pred EEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhh
Confidence 9999999 99999999999999994 444443 3349999998 999999999999999999999974 233 567
Q ss_pred ecc-ccCeEEeeec-ccceeeecccCCeeeccc
Q 043350 515 IAH-SSPVLKLAVG-VDHIYSLAAHGGIRGWTF 545 (1133)
Q Consensus 515 ~~H-~~~V~~l~fs-~~~L~S~s~Dg~I~lW~l 545 (1133)
.+| .+.|.+++|+ ...|+|++.|++|++|++
T Consensus 577 ~~h~~~~v~~v~fs~d~~l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 577 GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 609 (611)
T ss_dssp TSSTTSCEEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred ccCcccCeeEEEEcCCCEEEEecCCCCEEEEec
Confidence 799 8999999999 444999999999999997
No 10
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-35 Score=398.85 Aligned_cols=407 Identities=17% Similarity=0.183 Sum_probs=319.5
Q ss_pred cCCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ec
Q 043350 97 PGPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQ 173 (1133)
Q Consensus 97 ~~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~ 173 (1133)
.+|...+.. +.|+|+|++||+|+.||+|++|+..+ +.. +..+.+|.. .|.+++ ++++++++ +.
T Consensus 612 ~~h~~~v~~---~~~s~~~~~l~s~~~d~~i~vw~~~~---~~~-~~~~~~h~~-------~v~~~~~s~~~~~l~s~~~ 677 (1249)
T 3sfz_A 612 RPHTDAVYH---ACFSQDGQRIASCGADKTLQVFKAET---GEK-LLDIKAHED-------EVLCCAFSSDDSYIATCSA 677 (1249)
T ss_dssp CCCSSCEEE---EEECTTSSEEEEEETTSCEEEEETTT---CCE-EEEECCCSS-------CEEEEEECTTSSEEEEEET
T ss_pred ecccccEEE---EEECCCCCEEEEEeCCCeEEEEECCC---CCE-EEEeccCCC-------CEEEEEEecCCCEEEEEeC
Confidence 366666555 88999999999999999999999874 555 889999998 999999 99999998 78
Q ss_pred CCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC--CCCEEEEEeCCCeEEEEeCCCCCCCCCCC
Q 043350 174 ECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC--GNRLVWTGHKDGKIRSWKMDQTLDDANNP 251 (1133)
Q Consensus 174 Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp--d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~ 251 (1133)
|++|++||+.+... ......|..+|.|++|+| ++.++++|+.||+|++||+..+
T Consensus 678 d~~v~vwd~~~~~~-----------------~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~------- 733 (1249)
T 3sfz_A 678 DKKVKIWDSATGKL-----------------VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK------- 733 (1249)
T ss_dssp TSEEEEEETTTCCE-----------------EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS-------
T ss_pred CCeEEEEECCCCce-----------------EEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc-------
Confidence 99999999986422 223557888999999999 5668999999999999999862
Q ss_pred cccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCC-------------------------ceeeEeCCCCce
Q 043350 252 FKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESI-------------------------EKSLSLKPEEKH 305 (1133)
Q Consensus 252 ~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~-------------------------~~~l~~~~~~~~ 305 (1133)
.....+.+|.+.|++++|+|+|+ |++|+.||+|++||+.+. ...+.+++++..
T Consensus 734 -~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 812 (1249)
T 3sfz_A 734 -ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDK 812 (1249)
T ss_dssp -SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSE
T ss_pred -chhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCE
Confidence 45667889999999999999999 999999999999998652 234566788888
Q ss_pred EEEEeecce-EEEccCceeeeccc-cCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCC
Q 043350 306 MAALLVERS-FIDLRAQVTVNGAC-SISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQS 383 (1133)
Q Consensus 306 l~s~~~d~s-~~d~~~~~~v~~~~-~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp 383 (1133)
++++..... +|+..+...+.... .+...-..+..+.++...+..+.++.|++||+.++..+..+.+|...|++++|+|
T Consensus 813 l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp 892 (1249)
T 3sfz_A 813 IIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP 892 (1249)
T ss_dssp EEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred EEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECC
Confidence 777764333 77777665444443 2233333444555666666668899999999999999999999999999999999
Q ss_pred CCCccccccceEEEEeeCCCCcccccccc---------------------------------------------------
Q 043350 384 VQDQPVEDEMKVKFVSSNKKEKPHGFLQR--------------------------------------------------- 412 (1133)
Q Consensus 384 ~g~~~~e~e~~v~lasgs~Dg~i~~~~~~--------------------------------------------------- 412 (1133)
++.. +++++.|++++.|+..
T Consensus 893 dg~~---------l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1249)
T 3sfz_A 893 DGSS---------FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQ 963 (1249)
T ss_dssp TSSE---------EEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSC
T ss_pred CCCE---------EEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCc
Confidence 9988 8888888877744311
Q ss_pred -------------------------------ccceeeccCCceEEEEEecCCc-----------------------ccCC
Q 043350 413 -------------------------------SRNAIMGAADAVRRVATRGAGA-----------------------FVDD 438 (1133)
Q Consensus 413 -------------------------------~~~~~~~~~~~V~~v~~~p~g~-----------------------~~~h 438 (1133)
....+.+|...|..++|+|++. +..|
T Consensus 964 i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1043 (1249)
T 3sfz_A 964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAH 1043 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCC
T ss_pred EEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecC
Confidence 1112334555566666666554 2345
Q ss_pred CCCEEEEEECCCCeEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCC-CCcceee
Q 043350 439 TKRTEAMVLTADGMIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLD-GNLTASW 514 (1133)
Q Consensus 439 ~~~V~sl~~spdg~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~ 514 (1133)
...|.++.+++++.+++++.||.|++||. +++.+..+..|...|.+ |+|+|++|++|+.||+|++||+. ++++..+
T Consensus 1044 ~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l 1123 (1249)
T 3sfz_A 1044 QETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL 1123 (1249)
T ss_dssp SSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCC
T ss_pred CCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeee
Confidence 55666667776666666777777777777 55677778888888887 99999999999999999999987 5678889
Q ss_pred eccccCeEEeeec--ccceeeecccCCeeeccccCCCCc
Q 043350 515 IAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTSPSPL 551 (1133)
Q Consensus 515 ~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s~~~l 551 (1133)
.+|.+.|++++|+ +++|++++.||.|++|++.+...+
T Consensus 1124 ~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~ 1162 (1249)
T 3sfz_A 1124 KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1162 (1249)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCC
T ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceE
Confidence 9999999999998 889999999999999998875543
No 11
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.7e-34 Score=353.16 Aligned_cols=399 Identities=11% Similarity=0.113 Sum_probs=304.4
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCC-CCCeeeeccCCCccccccce-EEEEE-eC--CCCeEE--ecCCcEEEee
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPG-RPPCLELRPHPLKETQAGRF-LRNIA-CT--DTQLWA--GQECGVRFWN 181 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g-~~~~~~l~~H~~~~~~~g~~-V~~v~-s~--dg~lla--s~Dg~VrvWd 181 (1133)
+.|+|+|++|++++ ++.+++|+..+.... .. ...+.+|.. . |++++ ++ ++++|+ +.|+.|++||
T Consensus 24 ~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~-~~~~~~h~~-------~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 24 LSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPP-VVQFTGHGS-------SVVTTVKFSPIKGSQYLCSGDESGKVIVWG 94 (615)
T ss_dssp CEEETTTTEEEEEE-TTEEEEEECCSSCCSSCS-EEEECTTTT-------SCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred EEECCCCCEEEEec-CCeEEEEECCCCCCcccc-ceEEecCCC-------ceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence 88999999999998 789999998741000 44 889999998 8 99999 99 999999 7899999999
Q ss_pred CCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCC----CeEEEEeCCCCCCCCCCCcccccc
Q 043350 182 LEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKD----GKIRSWKMDQTLDDANNPFKEGLS 257 (1133)
Q Consensus 182 l~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~D----g~V~vWd~~~~~~~~~~~~~~~~~ 257 (1133)
+.+....... +.........|..+|.+++|+|++++|++++.| +.|++||.. +.+..
T Consensus 95 ~~~~~~~~~~---------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~----------~~~~~ 155 (615)
T 1pgu_A 95 WTFDKESNSV---------EVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG----------NSLGE 155 (615)
T ss_dssp EEEEGGGTEE---------EEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC----------CEEEE
T ss_pred CCCCcccccc---------cccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC----------Cccee
Confidence 8632000000 000022345688899999999999999999988 799999833 45667
Q ss_pred cccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCC---------------ceeeEeCCC-CceEEEEeecce--EEE
Q 043350 258 WQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESI---------------EKSLSLKPE-EKHMAALLVERS--FID 317 (1133)
Q Consensus 258 l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~---------------~~~l~~~~~-~~~l~s~~~d~s--~~d 317 (1133)
+.+|...|++++|+|++. |++++.|+.|++||+.+. +..+.++++ +..+++++.++. +|+
T Consensus 156 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 235 (615)
T 1pgu_A 156 VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 235 (615)
T ss_dssp CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred eecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 889999999999999996 999999999999998752 345677888 889999988877 888
Q ss_pred ccCceeeecc-c---cCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCC----cceeEEEeCCCCCccc
Q 043350 318 LRAQVTVNGA-C---SISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEG----HIENRVDTQSVQDQPV 389 (1133)
Q Consensus 318 ~~~~~~v~~~-~---~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~----~~v~~l~~sp~g~~~~ 389 (1133)
+.....+..+ . .+...-..+..+ ++...+..+.|+.|++||+++++.+..+..+. ..+.++.++ ++.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-- 311 (615)
T 1pgu_A 236 GKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGR-- 311 (615)
T ss_dssp TTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTE--
T ss_pred CCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCe--
Confidence 8877766665 3 333333333344 66666777889999999999999999998773 456677775 5655
Q ss_pred cccceEEEEeeCCCCcccccccc---ccceeeccCC---------------------------------ceEEEEE----
Q 043350 390 EDEMKVKFVSSNKKEKPHGFLQR---SRNAIMGAAD---------------------------------AVRRVAT---- 429 (1133)
Q Consensus 390 e~e~~v~lasgs~Dg~i~~~~~~---~~~~~~~~~~---------------------------------~V~~v~~---- 429 (1133)
+++++.++.++.|+.. ....+.+|.. .|..+++
T Consensus 312 -------l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~ 384 (615)
T 1pgu_A 312 -------IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQ 384 (615)
T ss_dssp -------EEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTT
T ss_pred -------EEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCc
Confidence 5566666555522211 1111111111 1111111
Q ss_pred ----------------------------------------------------------------------e--------c
Q 043350 430 ----------------------------------------------------------------------R--------G 431 (1133)
Q Consensus 430 ----------------------------------------------------------------------~--------p 431 (1133)
+ .
T Consensus 385 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 464 (615)
T 1pgu_A 385 EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLE 464 (615)
T ss_dssp CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEET
T ss_pred EEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeec
Confidence 1 0
Q ss_pred -CC---------------cccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEec-CCcceeE--Eec---
Q 043350 432 -AG---------------AFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILH-HQCAVQC--FCT--- 487 (1133)
Q Consensus 432 -~g---------------~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~-h~~~V~~--fs~--- 487 (1133)
++ .+.+|...|.+++|+|++ +|++|+.||.|++|++ +++++..+.. |...|++ |+|
T Consensus 465 ~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 544 (615)
T 1pgu_A 465 EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK 544 (615)
T ss_dssp TTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC-
T ss_pred CCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccc
Confidence 11 134577889999999999 9999999999999999 6788888887 9999998 999
Q ss_pred -------CCCEEEEEecCCeEEEEeCCC--CcceeeeccccCeEEeeec--ccceeeecccCCeeeccccC
Q 043350 488 -------YGSRMYVGYVSGYLQILDLDG--NLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 488 -------dg~~Lasgs~DG~I~vwd~~g--~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s 547 (1133)
++++|++|+.||+|++||+.. +++..+.+|.+.|++++|+ +. |++++.||.|++|++..
T Consensus 545 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 545 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp -----CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred cccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 999999999999999999985 6788899999999999999 66 99999999999999864
No 12
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.3e-34 Score=389.55 Aligned_cols=438 Identities=12% Similarity=0.123 Sum_probs=339.1
Q ss_pred CCCCCcccCCCCcccc-ccCCCCcc---cccCCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeec
Q 043350 71 SDDDLFSNNSNVITTS-GVPVNEDY---VCPGPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELR 146 (1133)
Q Consensus 71 s~d~~~~~s~s~~~~~-~~~p~~~~---~~~~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~ 146 (1133)
++|+....+++.+.+. .|...... ...+|...+.. +.|+|+|++|++|+.||.|++|+..+ ++. +..+.
T Consensus 624 s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~---~~~s~~~~~l~s~~~d~~v~vwd~~~---~~~-~~~~~ 696 (1249)
T 3sfz_A 624 SQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLC---CAFSSDDSYIATCSADKKVKIWDSAT---GKL-VHTYD 696 (1249)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE---EEECTTSSEEEEEETTSEEEEEETTT---CCE-EEEEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEE---EEEecCCCEEEEEeCCCeEEEEECCC---Cce-EEEEc
Confidence 4577888888877777 67643322 23366665555 88999999999999999999999874 555 88899
Q ss_pred cCCCccccccceEEEEE-eC--CCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEe
Q 043350 147 PHPLKETQAGRFLRNIA-CT--DTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVD 221 (1133)
Q Consensus 147 ~H~~~~~~~g~~V~~v~-s~--dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~s 221 (1133)
+|.. .|.+++ ++ ++.+++ +.|+.|++||+.+... ......|.++|.+++|+
T Consensus 697 ~~~~-------~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~-----------------~~~~~~h~~~v~~~~~s 752 (1249)
T 3sfz_A 697 EHSE-------QVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC-----------------RNTMFGHTNSVNHCRFS 752 (1249)
T ss_dssp CCSS-------CEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE-----------------EEEECCCSSCEEEEEEC
T ss_pred CCCC-------cEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch-----------------hheecCCCCCEEEEEEe
Confidence 9998 999999 77 455666 8899999999976422 22355788899999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCCC------C------C----------------------------------CCcccc
Q 043350 222 CGNRLVWTGHKDGKIRSWKMDQTLDD------A------N----------------------------------NPFKEG 255 (1133)
Q Consensus 222 pd~~~LaSgs~Dg~V~vWd~~~~~~~------~------~----------------------------------~~~~~~ 255 (1133)
|++++|++|+.||+|++||+..+... . . ......
T Consensus 753 p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~ 832 (1249)
T 3sfz_A 753 PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL 832 (1249)
T ss_dssp SSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEE
T ss_pred cCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCce
Confidence 99999999999999999998643100 0 0 000001
Q ss_pred c-ccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCC------------ceeeEeCCCCceEEEEeecce--EEEcc
Q 043350 256 L-SWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESI------------EKSLSLKPEEKHMAALLVERS--FIDLR 319 (1133)
Q Consensus 256 ~-~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~------------~~~l~~~~~~~~l~s~~~d~s--~~d~~ 319 (1133)
. ...+|...|.+++|+|++. +++++.||+|++|++.+. +..+.+++++..+++++.++. +|++.
T Consensus 833 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 833 AEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp EEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred eEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence 1 1237889999999999999 999999999999999863 456778889999999988887 67654
Q ss_pred Cceee--------------------ec----------------cccC-CCCCeEEEEecCCceEEEecCCCceeEeecCC
Q 043350 320 AQVTV--------------------NG----------------ACSI-SSTEIKCMLSDHARARVWCAQPLSFSLWDARS 362 (1133)
Q Consensus 320 ~~~~v--------------------~~----------------~~~~-~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~t 362 (1133)
..... .. .... ...-..+..+.++...+..+.++.|.+||+.+
T Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~ 992 (1249)
T 3sfz_A 913 KVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN 992 (1249)
T ss_dssp HHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT
T ss_pred ccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC
Confidence 21000 00 0000 01112223344555555557899999999999
Q ss_pred CceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccccc--ccceeeccCCceEEEEEecCCc------
Q 043350 363 KELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQR--SRNAIMGAADAVRRVATRGAGA------ 434 (1133)
Q Consensus 363 g~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~--~~~~~~~~~~~V~~v~~~p~g~------ 434 (1133)
++.+..+.+|...|++++|+|++.+ +++++.|++|+.|+.. .......|...+..+.++|++.
T Consensus 993 ~~~~~~~~~h~~~v~~l~~s~dg~~---------l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~ 1063 (1249)
T 3sfz_A 993 NRVFSSGVGHKKAVRHIQFTADGKT---------LISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSF 1063 (1249)
T ss_dssp TSCEEECCCCSSCCCCEEECSSSSC---------EEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEES
T ss_pred CceeeecccCCCceEEEEECCCCCE---------EEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEC
Confidence 9999999999999999999999999 9999999999955432 2334567888899888887654
Q ss_pred -----------------ccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEE
Q 043350 435 -----------------FVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMY 493 (1133)
Q Consensus 435 -----------------~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~La 493 (1133)
+.+|...|.+++++|++ .|++++.||+|++||. .+.++..+.+|...|++ |+|+|++|+
T Consensus 1064 dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~la 1143 (1249)
T 3sfz_A 1064 DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLA 1143 (1249)
T ss_dssp SSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEE
T ss_pred CCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEE
Confidence 45688889999999999 9999999999999999 67888899999999998 999999999
Q ss_pred EEecCCeEEEEeCC-CCcceee---------eccccCeEEeeec--ccceeeecccCCeeeccccCCCC
Q 043350 494 VGYVSGYLQILDLD-GNLTASW---------IAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTSPSP 550 (1133)
Q Consensus 494 sgs~DG~I~vwd~~-g~~l~~~---------~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s~~~ 550 (1133)
+|+.||+|++||+. ++.+..+ .+|.+.|++++|+ +++|++++ |.|++|++.+...
T Consensus 1144 t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1144 TGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp EEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBC
T ss_pred EEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCce
Confidence 99999999999997 4554444 6799999999999 88888876 8999999877544
No 13
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-34 Score=371.57 Aligned_cols=399 Identities=10% Similarity=0.053 Sum_probs=274.4
Q ss_pred CCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecC
Q 043350 98 GPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQE 174 (1133)
Q Consensus 98 ~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~D 174 (1133)
||...+.+ +.|+|++++||+|+.||+|+||+.. +.. ......|.. .|++++ ++ |++|+ +.|
T Consensus 15 gh~~~V~~---lafspdg~~lAsgs~Dg~I~lw~~~----~~~-~~~~~~~~~-------~V~~l~fsp-g~~L~S~s~D 78 (902)
T 2oaj_A 15 GMSSKPIA---AAFDFTQNLLAIATVTGEVHIYGQQ----QVE-VVIKLEDRS-------AIKEMRFVK-GIYLVVINAK 78 (902)
T ss_dssp ECSSCEEE---EEEETTTTEEEEEETTSEEEEECST----TCE-EEEECSSCC-------CEEEEEEET-TTEEEEEETT
T ss_pred CCCCCcEE---EEECCCCCEEEEEeCCCEEEEEeCC----CcE-EEEEcCCCC-------CEEEEEEcC-CCEEEEEECc
Confidence 66655555 8899999999999999999999976 333 222334655 899999 88 77666 889
Q ss_pred CcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCC--CCc
Q 043350 175 CGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDAN--NPF 252 (1133)
Q Consensus 175 g~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~--~~~ 252 (1133)
++|++||+.+.... ..+ .|...|+|++|+|++++|++|+.||+|++||+........ ...
T Consensus 79 ~~v~lWd~~~~~~~-----------------~~~-~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~ 140 (902)
T 2oaj_A 79 DTVYVLSLYSQKVL-----------------TTV-FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNL 140 (902)
T ss_dssp CEEEEEETTTCSEE-----------------EEE-ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCH
T ss_pred CeEEEEECCCCcEE-----------------EEE-cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccc
Confidence 99999999763211 112 2557899999999999999999999999999986221000 000
Q ss_pred ccc-cccccCCCCeEEEEEeeCC-c-EEEEeCCCcEEEEeCCCC------------------------------ceeeEe
Q 043350 253 KEG-LSWQAHRGPVLAMIFSSQG-D-LWSGGEGGVIKIWPWESI------------------------------EKSLSL 299 (1133)
Q Consensus 253 ~~~-~~l~gH~~~V~sl~fsp~g-~-L~Sgs~DgtI~iWdl~~~------------------------------~~~l~~ 299 (1133)
... ..+.+|.++|++|+|+|++ . |++|+.||+| +||+++. +..+.+
T Consensus 141 ~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~f 219 (902)
T 2oaj_A 141 QKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLY 219 (902)
T ss_dssp HHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEE
T ss_pred cccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEE
Confidence 000 3446788888888888864 3 7888888888 8887541 334566
Q ss_pred CCCCceEEEEeecce--EEEccCceeee----------------------------ccccCC--CCC-eEEEEec--C--
Q 043350 300 KPEEKHMAALLVERS--FIDLRAQVTVN----------------------------GACSIS--STE-IKCMLSD--H-- 342 (1133)
Q Consensus 300 ~~~~~~l~s~~~d~s--~~d~~~~~~v~----------------------------~~~~~~--~~~-~~~l~S~--d-- 342 (1133)
+|++..+++++.|+. +|++.+...+. .+++.+ .++ ..+++++ +
T Consensus 220 spdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~ 299 (902)
T 2oaj_A 220 HPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISR 299 (902)
T ss_dssp CTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTT
T ss_pred cCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCC
Confidence 777777888877776 77765433221 111111 111 1222221 1
Q ss_pred ---CceEEEe-------------------------------------------------------------cCCCceeEe
Q 043350 343 ---ARARVWC-------------------------------------------------------------AQPLSFSLW 358 (1133)
Q Consensus 343 ---~~i~vws-------------------------------------------------------------s~d~~I~lW 358 (1133)
..+.+|. +.|+.|++|
T Consensus 300 ~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~ 379 (902)
T 2oaj_A 300 GDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETM 379 (902)
T ss_dssp SSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEE
T ss_pred CCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEE
Confidence 0222221 235789999
Q ss_pred ecCCCceeEE-----------------------------------------EecCCcceeEEEeCCCCCccccccceEEE
Q 043350 359 DARSKELLKV-----------------------------------------FNIEGHIENRVDTQSVQDQPVEDEMKVKF 397 (1133)
Q Consensus 359 D~~tg~~l~~-----------------------------------------~~~h~~~v~~l~~sp~g~~~~e~e~~v~l 397 (1133)
|+.+|..... +.+|...+..++|+|++++ +
T Consensus 380 ~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~---------l 450 (902)
T 2oaj_A 380 LYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTA---------F 450 (902)
T ss_dssp ETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEE---------E
T ss_pred ECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcE---------E
Confidence 9877643321 1222333444556677777 9
Q ss_pred EeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCC-C------
Q 043350 398 VSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGN-G------ 469 (1133)
Q Consensus 398 asgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~-g------ 469 (1133)
++|+.|++|+.|+..... +. ...+..+.+.. ....+|...|++++|+|+| +|++|+.||+|++|++. +
T Consensus 451 aSgs~DgtVrlWd~~~g~-~~--~~~~~~~~l~~-~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~ 526 (902)
T 2oaj_A 451 ITGHSNGSVRIYDASHGD-IQ--DNASFEVNLSR-TLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVE 526 (902)
T ss_dssp EEEETTSEEEEEESSCCT-TT--TTBCEEEEHHH-HTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC----
T ss_pred EEecCCCcEEEEECCCcc-cc--CCceEEeechh-hcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCcc
Confidence 999999999976643221 10 00111111000 0012788899999999999 99999999999999983 2
Q ss_pred ---------------------------------------CeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCC
Q 043350 470 ---------------------------------------NRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 470 ---------------------------------------~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g 508 (1133)
+++..+.+|...|++ |+||| +||+|+.||+|+|||+++
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~ 605 (902)
T 2oaj_A 527 NRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRG 605 (902)
T ss_dssp -----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTT
T ss_pred ccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCC
Confidence 136778889999999 99999 999999999999999987
Q ss_pred Ccc------eeee-ccccCeEEeeec----------ccceeeecccCCeeeccc
Q 043350 509 NLT------ASWI-AHSSPVLKLAVG----------VDHIYSLAAHGGIRGWTF 545 (1133)
Q Consensus 509 ~~l------~~~~-~H~~~V~~l~fs----------~~~L~S~s~Dg~I~lW~l 545 (1133)
..+ ..+. +|.+.|++|+|+ +.+|++++.|++|++|++
T Consensus 606 ~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 606 PAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp TEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred CeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 432 2454 899999999999 469999999999999998
No 14
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.4e-33 Score=329.92 Aligned_cols=293 Identities=14% Similarity=0.193 Sum_probs=242.6
Q ss_pred eeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEE
Q 043350 142 CLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCL 218 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~l 218 (1133)
...+.+|.. .|++++ +|++.+++ +.|++|++||+.+... ...+.+|..+|.|+
T Consensus 101 ~~~l~gh~~-------~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~-----------------~~~l~~h~~~V~~v 156 (410)
T 1vyh_C 101 KYALSGHRS-------PVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-----------------ERTLKGHTDSVQDI 156 (410)
T ss_dssp SCEEECCSS-------CEEEEEECSSSSEEEEEESSSCEEEEETTTCCC-----------------CEEECCCSSCEEEE
T ss_pred eEeecccCC-------cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-----------------EEEEeccCCcEEEE
Confidence 567889998 999999 99999888 8899999999876322 22456788899999
Q ss_pred EEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceee
Q 043350 219 MVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSL 297 (1133)
Q Consensus 219 a~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l 297 (1133)
+|+|++++|++|+.|++|++||+.. .+.+..+.+|...|.+++|+|+|+ |+||+.|++|++||+.
T Consensus 157 ~~~~~~~~l~sgs~D~~i~iwd~~~--------~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~------ 222 (410)
T 1vyh_C 157 SFDHSGKLLASCSADMTIKLWDFQG--------FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ------ 222 (410)
T ss_dssp EECTTSSEEEEEETTSCCCEEETTS--------SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT------
T ss_pred EEcCCCCEEEEEeCCCeEEEEeCCC--------CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC------
Confidence 9999999999999999999999976 245678899999999999999999 9999999999999874
Q ss_pred EeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCccee
Q 043350 298 SLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIEN 377 (1133)
Q Consensus 298 ~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~ 377 (1133)
++.++..+.+|...+.
T Consensus 223 ----------------------------------------------------------------~~~~~~~~~~h~~~v~ 238 (410)
T 1vyh_C 223 ----------------------------------------------------------------TGYCVKTFTGHREWVR 238 (410)
T ss_dssp ----------------------------------------------------------------TCCEEEEEECCSSCEE
T ss_pred ----------------------------------------------------------------CCcEEEEEeCCCccEE
Confidence 3445566778888999
Q ss_pred EEEeCCCCCccccccceEEEEeeCCCCcccccccc---ccceeeccCCceEEEEEecCCcccCC--CCCEEEEEECCCC-
Q 043350 378 RVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQR---SRNAIMGAADAVRRVATRGAGAFVDD--TKRTEAMVLTADG- 451 (1133)
Q Consensus 378 ~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~---~~~~~~~~~~~V~~v~~~p~g~~~~h--~~~V~sl~~spdg- 451 (1133)
++.++|++.+ +++|+.|++|+.|+.+ ....+.+|...|.+++|+|++.+... ...........+|
T Consensus 239 ~~~~~~~g~~---------l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 309 (410)
T 1vyh_C 239 MVRPNQDGTL---------IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP 309 (410)
T ss_dssp EEEECTTSSE---------EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CC
T ss_pred EEEECCCCCE---------EEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCC
Confidence 9999999999 9999999999966543 34456677777888888776542110 0000111122346
Q ss_pred eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCC-CCcceeeeccccCeEEeeec
Q 043350 452 MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLD-GNLTASWIAHSSPVLKLAVG 527 (1133)
Q Consensus 452 ~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~H~~~V~~l~fs 527 (1133)
+|++|+.||+|++||+ .+.++..+.+|...|.+ |+|+|++|++|+.||+|++||+. ++++..+.+|...|++++|+
T Consensus 310 ~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~ 389 (410)
T 1vyh_C 310 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 389 (410)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC
T ss_pred EEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEc
Confidence 8999999999999999 67899999999999998 99999999999999999999997 46788999999999999999
Q ss_pred --ccceeeecccCCeeeccc
Q 043350 528 --VDHIYSLAAHGGIRGWTF 545 (1133)
Q Consensus 528 --~~~L~S~s~Dg~I~lW~l 545 (1133)
+.+|+|+|.||+|++|++
T Consensus 390 ~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 390 KTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SSSSCEEEEETTSEEEEEC-
T ss_pred CCCCEEEEEeCCCcEEEEeC
Confidence 789999999999999985
No 15
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.3e-32 Score=313.95 Aligned_cols=278 Identities=13% Similarity=0.174 Sum_probs=227.5
Q ss_pred eccCCCCeEEEEEeCC----CCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCC
Q 043350 208 ESANTSPTMCLMVDCG----NRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEG 282 (1133)
Q Consensus 208 ~~~h~s~V~~la~spd----~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~D 282 (1133)
..+|..+|.|++|+|+ +.+|+||+.|++|+||++.... ......+.+|...|.+++|++++. ++||+.|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~------~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D 101 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER------LDLQWSLEGHQLGVVSVDISHTLPIAASSSLD 101 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE------EEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC------eeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence 3468899999999874 6799999999999999987511 133456899999999999999999 9999999
Q ss_pred CcEEEEeCCCCcee--eEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeec
Q 043350 283 GVIKIWPWESIEKS--LSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDA 360 (1133)
Q Consensus 283 gtI~iWdl~~~~~~--l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~ 360 (1133)
++|++||+.+.... +..++.... . +.. .++...++++ +.++.|++||+
T Consensus 102 ~~i~lWd~~~~~~~~~~~~~~~~~~---------~-----------~~~--spdg~~l~~g--------~~dg~v~i~~~ 151 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSIDAGPVDAW---------T-----------LAF--SPDSQYLATG--------THVGKVNIFGV 151 (321)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCCC---------C-----------EEE--CTTSSEEEEE--------CTTSEEEEEET
T ss_pred CcEEEEECCCCCEEEEEeCCCccEE---------E-----------EEE--CCCCCEEEEE--------cCCCcEEEEEc
Confidence 99999999874222 222222111 1 111 2333344555 78999999999
Q ss_pred CCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCC
Q 043350 361 RSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTK 440 (1133)
Q Consensus 361 ~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~ 440 (1133)
.+++....+..+...+.+++|+|++++ |++|+.|++|+.|+.+....+ ..+.+|..
T Consensus 152 ~~~~~~~~~~~~~~~v~~~~~spdg~~---------lasg~~dg~i~iwd~~~~~~~---------------~~~~~h~~ 207 (321)
T 3ow8_A 152 ESGKKEYSLDTRGKFILSIAYSPDGKY---------LASGAIDGIINIFDIATGKLL---------------HTLEGHAM 207 (321)
T ss_dssp TTCSEEEEEECSSSCEEEEEECTTSSE---------EEEEETTSCEEEEETTTTEEE---------------EEECCCSS
T ss_pred CCCceeEEecCCCceEEEEEECCCCCE---------EEEEcCCCeEEEEECCCCcEE---------------EEEcccCC
Confidence 999999999999999999999999999 999999999986664422110 01346778
Q ss_pred CEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCC-CCcceeee
Q 043350 441 RTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLD-GNLTASWI 515 (1133)
Q Consensus 441 ~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~ 515 (1133)
.|.+++|+|++ +|++|+.||+|++||+ .++++..+.+|...|.+ |+|++++|++|+.||+|++||+. ++++.++.
T Consensus 208 ~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 287 (321)
T 3ow8_A 208 PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF 287 (321)
T ss_dssp CCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc
Confidence 88899999999 9999999999999999 56888999999999998 99999999999999999999997 57788999
Q ss_pred ccccCeEEeeec--ccceeeecccCCeeeccc
Q 043350 516 AHSSPVLKLAVG--VDHIYSLAAHGGIRGWTF 545 (1133)
Q Consensus 516 ~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l 545 (1133)
+|.+.|.+++|+ +++|+|++.||+|++||.
T Consensus 288 ~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 288 DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 999999999999 789999999999999995
No 16
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3e-32 Score=315.66 Aligned_cols=318 Identities=12% Similarity=0.083 Sum_probs=219.8
Q ss_pred CCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ec------CCcEEEeeC
Q 043350 112 QPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQ------ECGVRFWNL 182 (1133)
Q Consensus 112 ~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~------Dg~VrvWdl 182 (1133)
+++.-+ ..++++.....|++. ......|.. .|++|+ +|||++|+ +. |+.|++|+.
T Consensus 14 g~~~~~-~~~~g~~~~~~w~~p--------~~~p~~H~~-------~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~ 77 (357)
T 4g56_B 14 GTENLY-FQSNGSSKGSAWGRP--------VTAPACMEV-------QIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKD 77 (357)
T ss_dssp -----------------------------------CCCS-------EEEEEEECSSSCEEEEEECSSSSSCCEEEEEESS
T ss_pred CccceE-EecCCCccccccCCC--------CCCcccccC-------CEEEEEECCCCCEEEEEcCCCCccccCeEEEEEC
Confidence 455544 444556777889765 222356888 999999 99999999 44 677888887
Q ss_pred CCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCC
Q 043350 183 EDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHR 262 (1133)
Q Consensus 183 ~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~ 262 (1133)
........ .......|...|.|++|+|++.+ ++++.||+|+|||+..+.. .........+|.
T Consensus 78 ~~~~~~~~-------------~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~----~~~~~~~~~~h~ 139 (357)
T 4g56_B 78 PEGAPNES-------------LCTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKES----LLVNKFAKYEHD 139 (357)
T ss_dssp CC---CGG-------------GCSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC------------CCCCEEECCCS
T ss_pred CCCCccee-------------EecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccce----eEEEeeccCCCC
Confidence 65321110 01123457789999999998765 5678899999999976322 011223456899
Q ss_pred CCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEec
Q 043350 263 GPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSD 341 (1133)
Q Consensus 263 ~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~ 341 (1133)
+.|++|+|+|+|+ |+||+.|++|++||++
T Consensus 140 ~~V~~v~~spdg~~l~sgs~dg~v~iwd~~-------------------------------------------------- 169 (357)
T 4g56_B 140 DIVKTLSVFSDGTQAVSGGKDFSVKVWDLS-------------------------------------------------- 169 (357)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETT--------------------------------------------------
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEECC--------------------------------------------------
Confidence 9999999999999 9999999999999874
Q ss_pred CCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCC-ccccccceEEEEeeCCCCccccccccccceeecc
Q 043350 342 HARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQD-QPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGA 420 (1133)
Q Consensus 342 d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~-~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~ 420 (1133)
+++++..+.+|...|++++|++++. + +++++.|++|+.|+.+.......
T Consensus 170 --------------------~~~~~~~~~~h~~~v~~v~~s~~~~~~---------~~s~~~dg~v~~wd~~~~~~~~~- 219 (357)
T 4g56_B 170 --------------------QKAVLKSYNAHSSEVNCVAACPGKDTI---------FLSCGEDGRILLWDTRKPKPATR- 219 (357)
T ss_dssp --------------------TTEEEEEECCCSSCEEEEEECTTCSSC---------EEEEETTSCEEECCTTSSSCBCB-
T ss_pred --------------------CCcEEEEEcCCCCCEEEEEEccCCCce---------eeeeccCCceEEEECCCCceeee-
Confidence 3455567778889999999999875 6 88999999998776443221110
Q ss_pred CCceEEEEEecCCcccCCCCCEEEEEECCCC--eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCC-CEEEE
Q 043350 421 ADAVRRVATRGAGAFVDDTKRTEAMVLTADG--MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYG-SRMYV 494 (1133)
Q Consensus 421 ~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg--~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg-~~Las 494 (1133)
-.+..+...+.+++|+|++ +|++|+.|+.|++||+ +++++..+..|...|++ |+|++ ++||+
T Consensus 220 ------------~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~las 287 (357)
T 4g56_B 220 ------------IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLAS 287 (357)
T ss_dssp ------------CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEE
T ss_pred ------------eeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEE
Confidence 0123556678899999876 8899999999999999 66889999999999998 89987 57999
Q ss_pred EecCCeEEEEeCCCCcceeeeccccCeEEeeec---ccceeeecccCCeeeccccCCCCchhhh
Q 043350 495 GYVSGYLQILDLDGNLTASWIAHSSPVLKLAVG---VDHIYSLAAHGGIRGWTFTSPSPLDNII 555 (1133)
Q Consensus 495 gs~DG~I~vwd~~g~~l~~~~~H~~~V~~l~fs---~~~L~S~s~Dg~I~lW~l~s~~~ld~~i 555 (1133)
|+.||+|+|||++...+....+|.+.|++|+|+ +.+|+|+|.||+|++|++.+.+.....+
T Consensus 288 gs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~~~i 351 (357)
T 4g56_B 288 ISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTENLI 351 (357)
T ss_dssp EETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---------
T ss_pred EeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccccc
Confidence 999999999999865555567999999999997 6789999999999999998766554444
No 17
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=8.9e-32 Score=309.24 Aligned_cols=281 Identities=14% Similarity=0.147 Sum_probs=234.7
Q ss_pred eeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEE
Q 043350 142 CLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCL 218 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~l 218 (1133)
..++++|.. .|++++ ++++++++ +.|++|++||+.+... ......|...|.++
T Consensus 48 ~~~l~gH~~-------~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~-----------------~~~~~~~~~~v~~~ 103 (340)
T 1got_B 48 RRTLRGHLA-------KIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-----------------VHAIPLRSSWVMTC 103 (340)
T ss_dssp EEEECCCSS-------CEEEEEECTTSSEEEEEETTTEEEEEETTTCCE-----------------EEEEECSSSCEEEE
T ss_pred heeecCCCC-------ceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc-----------------ceEeecCCccEEEE
Confidence 678999999 999999 99999988 8999999999876322 12345678899999
Q ss_pred EEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCCCCceeeE
Q 043350 219 MVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWESIEKSLS 298 (1133)
Q Consensus 219 a~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~~~~~~l~ 298 (1133)
+|+|++++|++|+.|+.|++|++..... .......+.+|.+.|.++.|++++.|++++.|++|++||+.
T Consensus 104 ~~s~~~~~l~s~~~d~~v~iw~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~------- 172 (340)
T 1got_B 104 AYAPSGNYVACGGLDNICSIYNLKTREG----NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE------- 172 (340)
T ss_dssp EECTTSSEEEEEETTCEEEEEETTTCSB----SCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETT-------
T ss_pred EECCCCCEEEEEeCCCeEEEEECccCCC----cceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECC-------
Confidence 9999999999999999999999975211 12345578899999999999998889999999999999874
Q ss_pred eCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeE
Q 043350 299 LKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENR 378 (1133)
Q Consensus 299 ~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~ 378 (1133)
+++.+..+.+|...|.+
T Consensus 173 ---------------------------------------------------------------~~~~~~~~~~h~~~v~~ 189 (340)
T 1got_B 173 ---------------------------------------------------------------TGQQTTTFTGHTGDVMS 189 (340)
T ss_dssp ---------------------------------------------------------------TTEEEEEECCCSSCEEE
T ss_pred ---------------------------------------------------------------CCcEEEEEcCCCCceEE
Confidence 34445667788889999
Q ss_pred EEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEe
Q 043350 379 VDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGC 457 (1133)
Q Consensus 379 l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs 457 (1133)
++|+|++.+ +++|+.|++|+.|+.+..... ..+.+|...|.+++|+|++ +|++|+
T Consensus 190 ~~~~~~~~~---------l~sg~~d~~v~~wd~~~~~~~---------------~~~~~h~~~v~~v~~~p~~~~l~s~s 245 (340)
T 1got_B 190 LSLAPDTRL---------FVSGACDASAKLWDVREGMCR---------------QTFTGHESDINAICFFPNGNAFATGS 245 (340)
T ss_dssp EEECTTSSE---------EEEEETTSCEEEEETTTCSEE---------------EEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEECCCCCE---------EEEEeCCCcEEEEECCCCeeE---------------EEEcCCcCCEEEEEEcCCCCEEEEEc
Confidence 999999999 999999999987765422110 1145778889999999999 999999
Q ss_pred cCCeEEEEeC-CCCeeEEEec--CCcceeE--EecCCCEEEEEecCCeEEEEeCC-CCcceeeeccccCeEEeeec--cc
Q 043350 458 TNGLLVQWDG-NGNRVSDILH--HQCAVQC--FCTYGSRMYVGYVSGYLQILDLD-GNLTASWIAHSSPVLKLAVG--VD 529 (1133)
Q Consensus 458 ~DG~I~vWd~-~g~~l~~~~~--h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~H~~~V~~l~fs--~~ 529 (1133)
.||+|++||+ .++.+..+.. +...|.+ |+|+|++|++|+.||.|++||+. ++.+..+.+|.++|.+++|+ +.
T Consensus 246 ~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~ 325 (340)
T 1got_B 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM 325 (340)
T ss_dssp TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred CCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCC
Confidence 9999999999 4566665543 3346777 99999999999999999999986 56788899999999999999 78
Q ss_pred ceeeecccCCeeecc
Q 043350 530 HIYSLAAHGGIRGWT 544 (1133)
Q Consensus 530 ~L~S~s~Dg~I~lW~ 544 (1133)
+|+|+|.||+|++||
T Consensus 326 ~l~s~s~D~~i~iWd 340 (340)
T 1got_B 326 AVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEETTSCEEEEC
T ss_pred EEEEEcCCccEEecC
Confidence 999999999999996
No 18
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.1e-32 Score=315.31 Aligned_cols=285 Identities=14% Similarity=0.106 Sum_probs=220.1
Q ss_pred eEEEEE-eCCCCeEE-ecCCcEEEeeCCC-CC-CcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCC
Q 043350 158 FLRNIA-CTDTQLWA-GQECGVRFWNLED-SY-EPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKD 233 (1133)
Q Consensus 158 ~V~~v~-s~dg~lla-s~Dg~VrvWdl~~-~~-~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~D 233 (1133)
.|.+++ ++||++|+ +.|+++|+||... .. ....++. .........+..+|.+++|+|++ .|++|+.|
T Consensus 32 ~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~d 102 (344)
T 4gqb_B 32 QLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPN--------EGFCSAGVQTEAGVADLTWVGER-GILVASDS 102 (344)
T ss_dssp EEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTC--------GGGCSEEEEESSCEEEEEEETTT-EEEEEETT
T ss_pred CEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCC--------cceeeeeeccCCCEEEEEEeCCC-eEEEEECC
Confidence 899999 99999999 7799999998432 00 0000000 00011222356789999999985 67899999
Q ss_pred CeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeec
Q 043350 234 GKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVE 312 (1133)
Q Consensus 234 g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d 312 (1133)
|+|+|||+..+.. .......+.+|.+.|++|+|+|+|+ |+||+.|++|++||++
T Consensus 103 g~v~lWd~~~~~~----~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~--------------------- 157 (344)
T 4gqb_B 103 GAVELWELDENET----LIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA--------------------- 157 (344)
T ss_dssp SEEEEEEECTTSS----CEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT---------------------
T ss_pred CEEEEEeccCCCc----eeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC---------------------
Confidence 9999999986322 1112234568999999999999999 9999999999999873
Q ss_pred ceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCC-ccccc
Q 043350 313 RSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQD-QPVED 391 (1133)
Q Consensus 313 ~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~-~~~e~ 391 (1133)
+++++..+.+|...|++++|++++. +
T Consensus 158 -------------------------------------------------~~~~~~~~~~h~~~V~~~~~~~~~~~~---- 184 (344)
T 4gqb_B 158 -------------------------------------------------QQVVLSSYRAHAAQVTCVAASPHKDSV---- 184 (344)
T ss_dssp -------------------------------------------------TTEEEEEECCCSSCEEEEEECSSCTTE----
T ss_pred -------------------------------------------------CCcEEEEEcCcCCceEEEEecCCCCCc----
Confidence 3556677888999999999999885 5
Q ss_pred cceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC--eEEEEecCCeEEEEeC-C
Q 043350 392 EMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG--MIWSGCTNGLLVQWDG-N 468 (1133)
Q Consensus 392 e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg--~L~sgs~DG~I~vWd~-~ 468 (1133)
+++++.|++|+.|+.+.... +..+. ...+...+.+++++|++ +|++|+.||+|++||+ +
T Consensus 185 -----l~s~s~D~~v~iwd~~~~~~-------~~~~~------~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~ 246 (344)
T 4gqb_B 185 -----FLSCSEDNRILLWDTRCPKP-------ASQIG------CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS 246 (344)
T ss_dssp -----EEEEETTSCEEEEETTSSSC-------EEECC----------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC
T ss_pred -----eeeeccccccccccccccce-------eeeee------cceeeccceeeeecCCCCcceEEeccCCcEEEEECCC
Confidence 78999999998776543221 11111 12345568889999865 7899999999999999 6
Q ss_pred CCeeEEEecCCcceeE--EecCC-CEEEEEecCCeEEEEeCCCCcceeeeccccCeEEeeec--cc-ceeeecccCCeee
Q 043350 469 GNRVSDILHHQCAVQC--FCTYG-SRMYVGYVSGYLQILDLDGNLTASWIAHSSPVLKLAVG--VD-HIYSLAAHGGIRG 542 (1133)
Q Consensus 469 g~~l~~~~~h~~~V~~--fs~dg-~~Lasgs~DG~I~vwd~~g~~l~~~~~H~~~V~~l~fs--~~-~L~S~s~Dg~I~l 542 (1133)
++++.++.+|...|++ |+|+| ++|++|+.||+|+|||+....+..+.+|.+.|++|+|+ ++ .|+|+|.||+|++
T Consensus 247 ~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~ 326 (344)
T 4gqb_B 247 TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVH 326 (344)
T ss_dssp --CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEE
Confidence 7899999999999998 99998 57999999999999999876667789999999999998 55 4669999999999
Q ss_pred ccccC
Q 043350 543 WTFTS 547 (1133)
Q Consensus 543 W~l~s 547 (1133)
|++..
T Consensus 327 w~v~~ 331 (344)
T 4gqb_B 327 HVVPT 331 (344)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99875
No 19
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.6e-32 Score=321.19 Aligned_cols=281 Identities=14% Similarity=0.201 Sum_probs=230.9
Q ss_pred cccccCCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE
Q 043350 93 DYVCPGPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA 171 (1133)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla 171 (1133)
.....+|..++.. +.|+|++.+|++|+.||+|++|+..+ ++. ...+.+|.. .|.+++ ++++++++
T Consensus 101 ~~~l~gh~~~V~~---~~~~p~~~~l~s~s~Dg~i~vwd~~~---~~~-~~~l~~h~~-------~V~~v~~~~~~~~l~ 166 (410)
T 1vyh_C 101 KYALSGHRSPVTR---VIFHPVFSVMVSASEDATIKVWDYET---GDF-ERTLKGHTD-------SVQDISFDHSGKLLA 166 (410)
T ss_dssp SCEEECCSSCEEE---EEECSSSSEEEEEESSSCEEEEETTT---CCC-CEEECCCSS-------CEEEEEECTTSSEEE
T ss_pred eEeecccCCcEEE---EEEcCCCCEEEEEeCCCeEEEEECCC---CcE-EEEEeccCC-------cEEEEEEcCCCCEEE
Confidence 3445578777766 88999999999999999999999874 555 789999999 999999 99999888
Q ss_pred --ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCC
Q 043350 172 --GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDAN 249 (1133)
Q Consensus 172 --s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~ 249 (1133)
+.|++|++||+.+... .....+|..+|.|++|+|++++|++|+.|++|++||+..+
T Consensus 167 sgs~D~~i~iwd~~~~~~-----------------~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~----- 224 (410)
T 1vyh_C 167 SCSADMTIKLWDFQGFEC-----------------IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG----- 224 (410)
T ss_dssp EEETTSCCCEEETTSSCE-----------------EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-----
T ss_pred EEeCCCeEEEEeCCCCce-----------------eEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-----
Confidence 8899999999876321 1124467789999999999999999999999999999862
Q ss_pred CCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccc
Q 043350 250 NPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGAC 328 (1133)
Q Consensus 250 ~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~ 328 (1133)
..+..+.+|...|.+++|+|+|. |++|+.|++|++||+.+.
T Consensus 225 ---~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~----------------------------------- 266 (410)
T 1vyh_C 225 ---YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK----------------------------------- 266 (410)
T ss_dssp ---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-----------------------------------
T ss_pred ---cEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCC-----------------------------------
Confidence 44667899999999999999999 999999999999998542
Q ss_pred cCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCC--------------------CCcc
Q 043350 329 SISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSV--------------------QDQP 388 (1133)
Q Consensus 329 ~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~--------------------g~~~ 388 (1133)
++...+..|...|.+++|+|+ +.+
T Consensus 267 -----------------------------------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~- 310 (410)
T 1vyh_C 267 -----------------------------------ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPF- 310 (410)
T ss_dssp -----------------------------------CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCE-
T ss_pred -----------------------------------ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCE-
Confidence 222334445555556666554 445
Q ss_pred ccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC
Q 043350 389 VEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG 467 (1133)
Q Consensus 389 ~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~ 467 (1133)
+++|+.|++|+.|+.+....+ ..+.+|...|.+++|+|+| +|++|+.||+|++||.
T Consensus 311 --------l~sgs~D~~i~iwd~~~~~~~---------------~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~ 367 (410)
T 1vyh_C 311 --------LLSGSRDKTIKMWDVSTGMCL---------------MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367 (410)
T ss_dssp --------EEEEETTSEEEEEETTTTEEE---------------EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred --------EEEEeCCCeEEEEECCCCceE---------------EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 999999999987765422111 0134678889999999999 9999999999999999
Q ss_pred -CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeC
Q 043350 468 -NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDL 506 (1133)
Q Consensus 468 -~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~ 506 (1133)
+++++..+.+|...|++ |+|++.+|++|+.||+|++|++
T Consensus 368 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 368 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp TTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 66889999999999999 9999999999999999999986
No 20
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.8e-31 Score=306.58 Aligned_cols=282 Identities=14% Similarity=0.168 Sum_probs=233.4
Q ss_pred ccCCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--e
Q 043350 96 CPGPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--G 172 (1133)
Q Consensus 96 ~~~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s 172 (1133)
..+|...+.. +.|+|++++|++|+.||+|++|+..+ +.. +..+..|.. .|.+++ ++++.+++ +
T Consensus 51 l~gH~~~v~~---~~~s~d~~~l~s~s~Dg~v~iWd~~~---~~~-~~~~~~~~~-------~v~~~~~s~~~~~l~s~~ 116 (340)
T 1got_B 51 LRGHLAKIYA---MHWGTDSRLLLSASQDGKLIIWDSYT---TNK-VHAIPLRSS-------WVMTCAYAPSGNYVACGG 116 (340)
T ss_dssp ECCCSSCEEE---EEECTTSSEEEEEETTTEEEEEETTT---CCE-EEEEECSSS-------CEEEEEECTTSSEEEEEE
T ss_pred ecCCCCceEE---EEECCCCCEEEEEeCCCcEEEEECCC---CCc-ceEeecCCc-------cEEEEEECCCCCEEEEEe
Confidence 3467666666 78899999999999999999999873 444 788888988 899999 99999998 8
Q ss_pred cCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCc
Q 043350 173 QECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPF 252 (1133)
Q Consensus 173 ~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~ 252 (1133)
.|+.|++|++........ ......+|.+.|.|+.|++++. |++|+.|++|++||+..+
T Consensus 117 ~d~~v~iw~~~~~~~~~~-------------~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~-------- 174 (340)
T 1got_B 117 LDNICSIYNLKTREGNVR-------------VSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETG-------- 174 (340)
T ss_dssp TTCEEEEEETTTCSBSCE-------------EEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTT--------
T ss_pred CCCeEEEEECccCCCcce-------------eEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCC--------
Confidence 899999999876321110 0223557889999999998775 899999999999999761
Q ss_pred ccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCC
Q 043350 253 KEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSIS 331 (1133)
Q Consensus 253 ~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~ 331 (1133)
+.+..+.+|.+.|++++|+|++. |++|+.|++|++||++
T Consensus 175 ~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~---------------------------------------- 214 (340)
T 1got_B 175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR---------------------------------------- 214 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT----------------------------------------
T ss_pred cEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC----------------------------------------
Confidence 45668889999999999999999 9999999999999874
Q ss_pred CCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccc
Q 043350 332 STEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQ 411 (1133)
Q Consensus 332 ~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~ 411 (1133)
++.++..+.+|...|++++|+|++.+ |++|+.|++|+.|+.
T Consensus 215 ------------------------------~~~~~~~~~~h~~~v~~v~~~p~~~~---------l~s~s~d~~v~iwd~ 255 (340)
T 1got_B 215 ------------------------------EGMCRQTFTGHESDINAICFFPNGNA---------FATGSDDATCRLFDL 255 (340)
T ss_dssp ------------------------------TCSEEEEECCCSSCEEEEEECTTSSE---------EEEEETTSCEEEEET
T ss_pred ------------------------------CCeeEEEEcCCcCCEEEEEEcCCCCE---------EEEEcCCCcEEEEEC
Confidence 23445567778889999999999999 999999999987765
Q ss_pred cccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--Eec
Q 043350 412 RSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCT 487 (1133)
Q Consensus 412 ~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~ 487 (1133)
+....+ . .+. ...+...|.+++|+|+| +|++|+.||.|++||. .++.+..+.+|...|.| |+|
T Consensus 256 ~~~~~~-------~--~~~----~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~ 322 (340)
T 1got_B 256 RADQEL-------M--TYS----HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322 (340)
T ss_dssp TTTEEE-------E--EEC----CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT
T ss_pred CCCcEE-------E--EEc----cCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcC
Confidence 432211 1 111 12334579999999999 9999999999999998 67889999999999999 999
Q ss_pred CCCEEEEEecCCeEEEEe
Q 043350 488 YGSRMYVGYVSGYLQILD 505 (1133)
Q Consensus 488 dg~~Lasgs~DG~I~vwd 505 (1133)
+|.+|++|+.||+|+|||
T Consensus 323 dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 323 DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEEcCCccEEecC
Confidence 999999999999999997
No 21
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-31 Score=343.20 Aligned_cols=434 Identities=13% Similarity=0.103 Sum_probs=287.9
Q ss_pred CCCCcccCCCCcccc-ccCCCCcccc--cCCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccC
Q 043350 72 DDDLFSNNSNVITTS-GVPVNEDYVC--PGPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPH 148 (1133)
Q Consensus 72 ~d~~~~~s~s~~~~~-~~~p~~~~~~--~~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H 148 (1133)
+|+..+++++.+.+. +|........ ..|..++. .+.|+| |++|++++.|++|++||..+ ++. +..+. |
T Consensus 27 pdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~---~l~fsp-g~~L~S~s~D~~v~lWd~~~---~~~-~~~~~-~ 97 (902)
T 2oaj_A 27 FTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIK---EMRFVK-GIYLVVINAKDTVYVLSLYS---QKV-LTTVF-V 97 (902)
T ss_dssp TTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEE---EEEEET-TTEEEEEETTCEEEEEETTT---CSE-EEEEE-C
T ss_pred CCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEE---EEEEcC-CCEEEEEECcCeEEEEECCC---CcE-EEEEc-C
Confidence 467788888877777 6764433221 13433433 488999 88999999999999999873 444 66664 5
Q ss_pred CCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCc-CcCCCccccCCCCCCCc-eeeccCCCCeEEEEEeCC
Q 043350 149 PLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEP-GAGIGGRVRRGDEDAAP-FYESANTSPTMCLMVDCG 223 (1133)
Q Consensus 149 ~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~-~~gh~~~v~~g~~~~~~-~~~~~h~s~V~~la~spd 223 (1133)
.. .|++++ ++++++++ +.||+|++||+.+.... ..... .... .....|.++|.+++|+|+
T Consensus 98 ~~-------~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~--------~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 98 PG-------KITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDN--------LQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp SS-------CEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECC--------HHHHHTCSSSCCCCCCEEEEETT
T ss_pred CC-------CEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecc--------ccccccccccCCCCeEEEEEccC
Confidence 56 799999 99999998 88999999999863211 00000 0000 123568889999999995
Q ss_pred -CCEEEEEeCCCeEEEEeCCCCCCCCCCCccccccc------------------ccCCCCeEEEEEeeCCc-EEEEeCCC
Q 043350 224 -NRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSW------------------QAHRGPVLAMIFSSQGD-LWSGGEGG 283 (1133)
Q Consensus 224 -~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l------------------~gH~~~V~sl~fsp~g~-L~Sgs~Dg 283 (1133)
+..|++|+.||+| +||+... +....+ .+|...|++++|+|+|. |+||+.||
T Consensus 163 ~~~~l~~g~~dg~v-lWd~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg 233 (902)
T 2oaj_A 163 DIGTVLISYEYVTL-TYSLVEN--------EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDN 233 (902)
T ss_dssp EEEEEEEECSSCEE-EEETTTT--------EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTC
T ss_pred CCCEEEEEeCCCcE-EEECCCC--------ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCC
Confidence 5789999999999 9999862 222223 34578899999999999 99999999
Q ss_pred cEEEEeCCCCce------------------------------eeEe----CCCC-ceEEEEeecc-----e--EEEcc--
Q 043350 284 VIKIWPWESIEK------------------------------SLSL----KPEE-KHMAALLVER-----S--FIDLR-- 319 (1133)
Q Consensus 284 tI~iWdl~~~~~------------------------------~l~~----~~~~-~~l~s~~~d~-----s--~~d~~-- 319 (1133)
+|++||+.+... .+.+ .|++ ..+++++.+. . .|++.
T Consensus 234 ~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~ 313 (902)
T 2oaj_A 234 SLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYT 313 (902)
T ss_dssp CEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEEC
T ss_pred eEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCC
Confidence 999999976311 1122 1222 3344443331 1 33310
Q ss_pred ---------------------------CceeeeccccC----------CCCCeEEEEe----------------------
Q 043350 320 ---------------------------AQVTVNGACSI----------SSTEIKCMLS---------------------- 340 (1133)
Q Consensus 320 ---------------------------~~~~v~~~~~~----------~~~~~~~l~S---------------------- 340 (1133)
....+..++.. .++...+.++
T Consensus 314 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~ 393 (902)
T 2oaj_A 314 PRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLF 393 (902)
T ss_dssp CCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGS
T ss_pred CCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccC
Confidence 00000000000 0000111111
Q ss_pred ---------------------------------------------------cCCceEEEecCCCceeEeecCCCcee--E
Q 043350 341 ---------------------------------------------------DHARARVWCAQPLSFSLWDARSKELL--K 367 (1133)
Q Consensus 341 ---------------------------------------------------~d~~i~vwss~d~~I~lWD~~tg~~l--~ 367 (1133)
.++...+..+.|++|++||+.++.+. .
T Consensus 394 ~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~ 473 (902)
T 2oaj_A 394 PQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNA 473 (902)
T ss_dssp CGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTB
T ss_pred CCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCc
Confidence 12333344467899999999887532 1
Q ss_pred EEe---------cCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccce--------------------ee
Q 043350 368 VFN---------IEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNA--------------------IM 418 (1133)
Q Consensus 368 ~~~---------~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~--------------------~~ 418 (1133)
.+. +|...|++++|+|++++ ||+|+.|++|+.|+...... +.
T Consensus 474 ~~~~~l~~~~~~~h~~~V~svafspdg~~---------LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (902)
T 2oaj_A 474 SFEVNLSRTLNKAKELAVDKISFAAETLE---------LAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLN 544 (902)
T ss_dssp CEEEEHHHHTTCSSSCCEEEEEEETTTTE---------EEEEETTSCEEEEEEEECCC---------------CCSCCGG
T ss_pred eEEeechhhcCCCCCCceeEEEecCCCCe---------EEEEecCcEEEEEEecCccccCccccCCCcccceeeeecccc
Confidence 121 67888999999999999 99999999999554321100 00
Q ss_pred ccCCceE----------EEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeCCCCee-E-----EEe-cCCcc
Q 043350 419 GAADAVR----------RVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGNGNRV-S-----DIL-HHQCA 481 (1133)
Q Consensus 419 ~~~~~V~----------~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~g~~l-~-----~~~-~h~~~ 481 (1133)
....... ...+.+-..+.+|.+.|++++|+|||+|++|+.||+|++||+++..+ . .+. +|...
T Consensus 545 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~ 624 (902)
T 2oaj_A 545 NTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIGFVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSAC 624 (902)
T ss_dssp GSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTSEEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCC
T ss_pred CCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCcEEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccc
Confidence 0000000 00111122356799999999999999999999999999999976433 2 233 78999
Q ss_pred eeE--Ee-----cCC---CEEEEEecCCeEEEEeC----CCCcceeeeccc-----cCeEEee-ec--------------
Q 043350 482 VQC--FC-----TYG---SRMYVGYVSGYLQILDL----DGNLTASWIAHS-----SPVLKLA-VG-------------- 527 (1133)
Q Consensus 482 V~~--fs-----~dg---~~Lasgs~DG~I~vwd~----~g~~l~~~~~H~-----~~V~~l~-fs-------------- 527 (1133)
|++ |+ ||| .+|++|+.||+|++||+ .|+.+..+.+|. ++|.++. |+
T Consensus 625 V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~ 704 (902)
T 2oaj_A 625 VTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKM 704 (902)
T ss_dssp EEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHH
T ss_pred eEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHH
Confidence 999 99 886 89999999999999998 467777888874 7787776 43
Q ss_pred ---------ccceeeecccCCeeeccccCC
Q 043350 528 ---------VDHIYSLAAHGGIRGWTFTSP 548 (1133)
Q Consensus 528 ---------~~~L~S~s~Dg~I~lW~l~s~ 548 (1133)
..+++.++ +..||+|++.+.
T Consensus 705 ~~l~~~~~~~~~~l~~~-~~~ir~~~~~~~ 733 (902)
T 2oaj_A 705 QNLSKGLCIPGIVLITG-FDDIRLITLGKS 733 (902)
T ss_dssp HGGGGTCCCCEEEEEEC-SSEEEEECTTCC
T ss_pred hccCCCCCCCeEEEEEe-ccceEEEeCccc
Confidence 22344444 778999998774
No 22
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-31 Score=308.44 Aligned_cols=294 Identities=15% Similarity=0.184 Sum_probs=230.3
Q ss_pred eeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEE
Q 043350 142 CLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCL 218 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~l 218 (1133)
+.++++|+. ..|++++ +|+|++|+ +.|++|+|||+.+..... ......+|..+|.++
T Consensus 8 ~~~~~~h~~------~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~--------------~~~~~~~h~~~v~~~ 67 (345)
T 3fm0_A 8 LGRVPAHPD------SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWIC--------------KSVLSEGHQRTVRKV 67 (345)
T ss_dssp EEEECCSTT------SCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEE--------------EEEECSSCSSCEEEE
T ss_pred eeeecCCCC------CcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCccee--------------eeeeccccCCcEEEE
Confidence 567788875 2689999 99999999 889999999987531100 011235788899999
Q ss_pred EEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceee
Q 043350 219 MVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSL 297 (1133)
Q Consensus 219 a~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l 297 (1133)
+|+|++++|++|+.|++|++|++.... ...+..+.+|.+.|++++|+|+|+ |+||+.|++|++||+...
T Consensus 68 ~~sp~g~~l~s~s~D~~v~iw~~~~~~------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~---- 137 (345)
T 3fm0_A 68 AWSPCGNYLASASFDATTCIWKKNQDD------FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE---- 137 (345)
T ss_dssp EECTTSSEEEEEETTSCEEEEEECCC-------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT----
T ss_pred EECCCCCEEEEEECCCcEEEEEccCCC------eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC----
Confidence 999999999999999999999987521 245678899999999999999999 999999999999998531
Q ss_pred EeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCccee
Q 043350 298 SLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIEN 377 (1133)
Q Consensus 298 ~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~ 377 (1133)
....++..+..|...|.
T Consensus 138 ---------------------------------------------------------------~~~~~~~~~~~h~~~v~ 154 (345)
T 3fm0_A 138 ---------------------------------------------------------------DEYECVSVLNSHTQDVK 154 (345)
T ss_dssp ---------------------------------------------------------------SCEEEEEEECCCCSCEE
T ss_pred ---------------------------------------------------------------CCeEEEEEecCcCCCeE
Confidence 01123345667888899
Q ss_pred EEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEE
Q 043350 378 RVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSG 456 (1133)
Q Consensus 378 ~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sg 456 (1133)
+++|+|++.+ |++|+.|++|+.|+.+.... ..+ ..+.+|...|.+++|+|+| +|++|
T Consensus 155 ~~~~~p~~~~---------l~s~s~d~~i~~w~~~~~~~--------~~~-----~~~~~h~~~v~~l~~sp~g~~l~s~ 212 (345)
T 3fm0_A 155 HVVWHPSQEL---------LASASYDDTVKLYREEEDDW--------VCC-----ATLEGHESTVWSLAFDPSGQRLASC 212 (345)
T ss_dssp EEEECSSSSC---------EEEEETTSCEEEEEEETTEE--------EEE-----EEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCE---------EEEEeCCCcEEEEEecCCCE--------EEE-----EEecCCCCceEEEEECCCCCEEEEE
Confidence 9999999999 99999999997665331110 001 1245788899999999999 99999
Q ss_pred ecCCeEEEEeC-C-C--------------CeeEEEec-CCcceeE--EecCCCEEEEEecCCeEEEEeCCCC-----cc-
Q 043350 457 CTNGLLVQWDG-N-G--------------NRVSDILH-HQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGN-----LT- 511 (1133)
Q Consensus 457 s~DG~I~vWd~-~-g--------------~~l~~~~~-h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~-----~l- 511 (1133)
+.||+|++|+. . + .++..+.+ |...|.+ |++++.+|++++.|+.|++|+.... +.
T Consensus 213 s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~ 292 (345)
T 3fm0_A 213 SDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF 292 (345)
T ss_dssp ETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCE
T ss_pred eCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeE
Confidence 99999999985 1 1 23445555 8888988 9999999999999999999998632 11
Q ss_pred ----eeeeccccCeEEeeec--c-cceeeecccCCeeeccccCCCC
Q 043350 512 ----ASWIAHSSPVLKLAVG--V-DHIYSLAAHGGIRGWTFTSPSP 550 (1133)
Q Consensus 512 ----~~~~~H~~~V~~l~fs--~-~~L~S~s~Dg~I~lW~l~s~~~ 550 (1133)
....+|...|++|+|+ + .+|+|+|.||+|++|++.....
T Consensus 293 ~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 293 SLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp EEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred EEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 1235899999999999 3 4899999999999999877543
No 23
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.6e-31 Score=301.06 Aligned_cols=283 Identities=17% Similarity=0.171 Sum_probs=228.2
Q ss_pred eeeeccCCCccccccceEEEEE-eC----CCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCC
Q 043350 142 CLELRPHPLKETQAGRFLRNIA-CT----DTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSP 214 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V~~v~-s~----dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~ 214 (1133)
...+++|.. .|++++ ++ ++.+|+ +.|++|++|++....... ...+.+|..+
T Consensus 25 ~~~~~~H~~-------~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~---------------~~~l~gh~~~ 82 (321)
T 3ow8_A 25 FKQEQAHDD-------AIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDL---------------QWSLEGHQLG 82 (321)
T ss_dssp EEETTSSSS-------CEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEE---------------EEEECCCSSC
T ss_pred eeecccCCC-------cEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeee---------------eeeeccCCCC
Confidence 345678998 999999 65 356777 889999999986532111 2345678889
Q ss_pred eEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCC
Q 043350 215 TMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESI 293 (1133)
Q Consensus 215 V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~ 293 (1133)
|.+++|++++.++++|+.|++|++||+..+ +.+..+..|...+.+++|+|+|+ |++|+.||.|++|+++..
T Consensus 83 v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~--------~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~ 154 (321)
T 3ow8_A 83 VVSVDISHTLPIAASSSLDAHIRLWDLENG--------KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG 154 (321)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTT--------EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCC--------CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC
Confidence 999999999999999999999999999751 45667788999999999999999 999999999999999875
Q ss_pred ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCC
Q 043350 294 EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEG 373 (1133)
Q Consensus 294 ~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~ 373 (1133)
.....+...... +..+. ..++..+++++ +.|+.|++||+++++++..+.+|.
T Consensus 155 ~~~~~~~~~~~~------------------v~~~~--~spdg~~lasg--------~~dg~i~iwd~~~~~~~~~~~~h~ 206 (321)
T 3ow8_A 155 KKEYSLDTRGKF------------------ILSIA--YSPDGKYLASG--------AIDGIINIFDIATGKLLHTLEGHA 206 (321)
T ss_dssp SEEEEEECSSSC------------------EEEEE--ECTTSSEEEEE--------ETTSCEEEEETTTTEEEEEECCCS
T ss_pred ceeEEecCCCce------------------EEEEE--ECCCCCEEEEE--------cCCCeEEEEECCCCcEEEEEcccC
Confidence 444333322222 11111 12344455555 789999999999999999999999
Q ss_pred cceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-e
Q 043350 374 HIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-M 452 (1133)
Q Consensus 374 ~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~ 452 (1133)
..|.+++|+|++.+ |++|+.|++|+.|+.+..... ..+.+|...|.+++|+|++ +
T Consensus 207 ~~v~~l~~spd~~~---------l~s~s~dg~i~iwd~~~~~~~---------------~~~~~h~~~v~~~~~sp~~~~ 262 (321)
T 3ow8_A 207 MPIRSLTFSPDSQL---------LVTASDDGYIKIYDVQHANLA---------------GTLSGHASWVLNVAFCPDDTH 262 (321)
T ss_dssp SCCCEEEECTTSCE---------EEEECTTSCEEEEETTTCCEE---------------EEECCCSSCEEEEEECTTSSE
T ss_pred CceeEEEEcCCCCE---------EEEEcCCCeEEEEECCCccee---------------EEEcCCCCceEEEEECCCCCE
Confidence 99999999999999 999999999986664422110 1145788889999999999 9
Q ss_pred EEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeC
Q 043350 453 IWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDL 506 (1133)
Q Consensus 453 L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~ 506 (1133)
|++|+.||+|++||+ +++++.++..|...|++ |+|+|++|++++.||+|++||.
T Consensus 263 l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 263 FVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 999999999999999 67899999999999998 9999999999999999999995
No 24
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.6e-31 Score=306.61 Aligned_cols=289 Identities=12% Similarity=0.095 Sum_probs=210.3
Q ss_pred CCCCCCCCCcccccCCCCCEEEEecC------CCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeE
Q 043350 98 GPDAADDQQQHKPFQPMVEFIGSGGG------TGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLW 170 (1133)
Q Consensus 98 ~~~~~~~~~~~~~~~p~g~~lasgs~------dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~ll 170 (1133)
.|...+.+ +.|+|||++||+||. |+.+++|+.....+....+....+|.. .|.+++ ++++.++
T Consensus 40 ~H~~~V~~---v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~-------~V~~~~~s~d~~~l 109 (357)
T 4g56_B 40 CMEVQIGA---VRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEA-------GVTDVAWVSEKGIL 109 (357)
T ss_dssp CCCSEEEE---EEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSS-------CEEEEEEETTTEEE
T ss_pred cccCCEEE---EEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCC-------CEEEEEEcCCCCEE
Confidence 45555555 889999999999998 678888886542222222445566777 899999 9999999
Q ss_pred E-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCC
Q 043350 171 A-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDAN 249 (1133)
Q Consensus 171 a-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~ 249 (1133)
+ +.|++|+|||+.+..... ...+....|..+|.|++|+|++++|++|+.||+|++||+..
T Consensus 110 ~~s~dg~v~lWd~~~~~~~~-------------~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~------ 170 (357)
T 4g56_B 110 VASDSGAVELWEILEKESLL-------------VNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ------ 170 (357)
T ss_dssp EEETTSCEEEC--------C-------------CCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT------
T ss_pred EEECCCEEEEeeccccceeE-------------EEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC------
Confidence 8 999999999987632211 11334557889999999999999999999999999999986
Q ss_pred CCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCce--eeEeCCCCceEEEEeecceEEEccCceeee
Q 043350 250 NPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEK--SLSLKPEEKHMAALLVERSFIDLRAQVTVN 325 (1133)
Q Consensus 250 ~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~--~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~ 325 (1133)
.+.+..+.+|...|++++|++++. |++++.||+|++||+++... .+........ +.
T Consensus 171 --~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~------------------v~ 230 (357)
T 4g56_B 171 --KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTI------------------PT 230 (357)
T ss_dssp --TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSC------------------EE
T ss_pred --CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeecccccc------------------cc
Confidence 155678899999999999999986 99999999999999987322 2222222111 11
Q ss_pred ccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCc
Q 043350 326 GACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEK 405 (1133)
Q Consensus 326 ~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~ 405 (1133)
.+...+.. ..+++++ +.|+.|++||++++++++.+.+|...|++++|+|++..
T Consensus 231 ~v~~sp~~-~~~la~g--------~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~------------------ 283 (357)
T 4g56_B 231 SVTWHPEK-DDTFACG--------DETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSP------------------ 283 (357)
T ss_dssp EEEECTTS-TTEEEEE--------ESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSC------------------
T ss_pred chhhhhcc-cceEEEe--------ecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCC------------------
Confidence 11111222 2234444 67899999999998888887777776766666665432
Q ss_pred cccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeCCCCeeEEEecCCcceeE-
Q 043350 406 PHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGNGNRVSDILHHQCAVQC- 484 (1133)
Q Consensus 406 i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~g~~l~~~~~h~~~V~~- 484 (1133)
+|++|+.||+|++||++...+....+|...|++
T Consensus 284 ----------------------------------------------~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~v 317 (357)
T 4g56_B 284 ----------------------------------------------FLASISEDCTVAVLDADFSEVFRDLSHRDFVTGV 317 (357)
T ss_dssp ----------------------------------------------CEEEEETTSCEEEECTTSCEEEEECCCSSCEEEE
T ss_pred ----------------------------------------------EEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEE
Confidence 378888999999999955444455689999998
Q ss_pred -Eec-CCCEEEEEecCCeEEEEeCCC
Q 043350 485 -FCT-YGSRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 485 -fs~-dg~~Lasgs~DG~I~vwd~~g 508 (1133)
|+| ++.+|++|+.||+|++|++..
T Consensus 318 afsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 318 AWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp EECSSSTTEEEEEETTSCEEEEECC-
T ss_pred EEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 888 789999999999999999863
No 25
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.6e-31 Score=312.02 Aligned_cols=294 Identities=14% Similarity=0.180 Sum_probs=230.9
Q ss_pred eeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEE
Q 043350 142 CLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCL 218 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~l 218 (1133)
..+|++|.. .|++++ +|++.+|+ +.|++|++||+.+... ......|...|.++
T Consensus 59 ~~~l~gH~~-------~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~-----------------~~~~~~h~~~v~~~ 114 (380)
T 3iz6_a 59 CRTLQGHSG-------KVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK-----------------THAIKLHCPWVMEC 114 (380)
T ss_dssp EEEECCCSS-------CEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-----------------EEEEECCCTTCCCC
T ss_pred eeccccccc-------EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-----------------ceEEecCCCCEEEE
Confidence 678999999 999999 99999888 8899999999876322 22455788899999
Q ss_pred EEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCcee
Q 043350 219 MVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKS 296 (1133)
Q Consensus 219 a~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~ 296 (1133)
+|+|++++|++|+.|+.|++|++...... .........+.+|.+.|.+++|.|++. |+||+.|++|++||+.+....
T Consensus 115 ~~s~~g~~las~~~d~~v~iw~~~~~~~~-~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~ 193 (380)
T 3iz6_a 115 AFAPNGQSVACGGLDSACSIFNLSSQADR-DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI 193 (380)
T ss_dssp EECTTSSEEEECCSSSCCEEEECCCCSSC-CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEE
T ss_pred EECCCCCEEEEeeCCCcEEEEECCCCccc-cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEE
Confidence 99999999999999999999998752211 112234557889999999999999854 999999999999998642111
Q ss_pred eEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcce
Q 043350 297 LSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIE 376 (1133)
Q Consensus 297 l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v 376 (1133)
..+. . . ...+|...+
T Consensus 194 ~~~~----------------------------------------~-------------------~------~~~~h~~~v 208 (380)
T 3iz6_a 194 SIFG----------------------------------------S-------------------E------FPSGHTADV 208 (380)
T ss_dssp EEEC----------------------------------------C-------------------C------SSSSCCSCE
T ss_pred EEee----------------------------------------c-------------------c------cCCCCccCe
Confidence 0000 0 0 013567778
Q ss_pred eEEEeCC-CCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEE
Q 043350 377 NRVDTQS-VQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIW 454 (1133)
Q Consensus 377 ~~l~~sp-~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~ 454 (1133)
.++++++ ++.+ +++|+.|++|+.|+.+.... .+ ..+.+|...|.+++|+|++ +|+
T Consensus 209 ~~~~~~~~~~~~---------l~sgs~D~~v~~wd~~~~~~------~~--------~~~~~h~~~v~~v~~~p~~~~l~ 265 (380)
T 3iz6_a 209 LSLSINSLNANM---------FISGSCDTTVRLWDLRITSR------AV--------RTYHGHEGDINSVKFFPDGQRFG 265 (380)
T ss_dssp EEEEECSSSCCE---------EEEEETTSCEEEEETTTTCC------CC--------EEECCCSSCCCEEEECTTSSEEE
T ss_pred EEEEeecCCCCE---------EEEEECCCeEEEEECCCCCc------ce--------EEECCcCCCeEEEEEecCCCeEE
Confidence 8999977 7778 99999999998776542110 00 1145778888899999999 999
Q ss_pred EEecCCeEEEEeC-CCCeeEEEecCCc-------ceeE--EecCCCEEEEEecCCeEEEEeCC-CCcceee----ecccc
Q 043350 455 SGCTNGLLVQWDG-NGNRVSDILHHQC-------AVQC--FCTYGSRMYVGYVSGYLQILDLD-GNLTASW----IAHSS 519 (1133)
Q Consensus 455 sgs~DG~I~vWd~-~g~~l~~~~~h~~-------~V~~--fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~----~~H~~ 519 (1133)
+|+.||+|++||+ .+.++..+..+.. .|++ |+|+|++|++|+.||.|++||+. ++.+..+ .+|.+
T Consensus 266 s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~ 345 (380)
T 3iz6_a 266 TGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG 345 (380)
T ss_dssp EECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCC
T ss_pred EEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCC
Confidence 9999999999999 6677777755332 3555 99999999999999999999986 4555554 68999
Q ss_pred CeEEeeec--ccceeeecccCCeeeccccCC
Q 043350 520 PVLKLAVG--VDHIYSLAAHGGIRGWTFTSP 548 (1133)
Q Consensus 520 ~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s~ 548 (1133)
.|++++|+ +.+|+|+|.||+|++|++...
T Consensus 346 ~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 346 RISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp CCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred ceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 99999999 889999999999999998754
No 26
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2e-30 Score=300.01 Aligned_cols=288 Identities=17% Similarity=0.193 Sum_probs=231.3
Q ss_pred eeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEE
Q 043350 142 CLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCL 218 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~l 218 (1133)
..++++|.. .|++++ ++++.+|+ +.|++|++||..+... ......|...|.++
T Consensus 57 ~~~l~gH~~-------~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~-----------------~~~~~~~~~~v~~~ 112 (354)
T 2pbi_B 57 RRTLKGHGN-------KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK-----------------EHAVTMPCTWVMAC 112 (354)
T ss_dssp EEEEECCSS-------CEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----------------EEEEECSSSCCCEE
T ss_pred EEEecCCCC-------eEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc-----------------ceEEecCCCCEEEE
Confidence 678999999 999999 99999998 8999999999765322 12344677789999
Q ss_pred EEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCcee-
Q 043350 219 MVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKS- 296 (1133)
Q Consensus 219 a~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~- 296 (1133)
+|+|++.+|++|+.|+.+++|++..... .........+.+|.+.|.+++|+|++. |+||+.|++|++||+++....
T Consensus 113 ~~sp~g~~lasg~~d~~i~v~~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~ 190 (354)
T 2pbi_B 113 AYAPSGCAIACGGLDNKCSVYPLTFDKN--ENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQ 190 (354)
T ss_dssp EECTTSSEEEEESTTSEEEEEECCCCTT--CCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred EECCCCCEEEEeeCCCCEEEEEEecccc--ccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEE
Confidence 9999999999999999999999875322 111244556788999999999999998 999999999999999874322
Q ss_pred -eEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcc
Q 043350 297 -LSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHI 375 (1133)
Q Consensus 297 -l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~ 375 (1133)
+..+..... .+++. +.++...++++ +.|+.|++||+++++++..+.+|...
T Consensus 191 ~~~~h~~~v~---------~~~~~-----------~~~~g~~l~sg--------s~Dg~v~~wd~~~~~~~~~~~~h~~~ 242 (354)
T 2pbi_B 191 SFHGHGADVL---------CLDLA-----------PSETGNTFVSG--------GCDKKAMVWDMRSGQCVQAFETHESD 242 (354)
T ss_dssp EEECCSSCEE---------EEEEC-----------CCSSCCEEEEE--------ETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred EEcCCCCCeE---------EEEEE-----------eCCCCCEEEEE--------eCCCeEEEEECCCCcEEEEecCCCCC
Confidence 222222222 22222 44444566666 88999999999999999999999999
Q ss_pred eeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEE
Q 043350 376 ENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIW 454 (1133)
Q Consensus 376 v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~ 454 (1133)
|++++|+|++.+ |++|+.|++++.|+.+....+ ..+. ...+...+.+++|+|++ +|+
T Consensus 243 v~~v~~~p~~~~---------l~s~s~D~~v~lwd~~~~~~~---------~~~~----~~~~~~~~~~~~~s~~g~~l~ 300 (354)
T 2pbi_B 243 VNSVRYYPSGDA---------FASGSDDATCRLYDLRADREV---------AIYS----KESIIFGASSVDFSLSGRLLF 300 (354)
T ss_dssp EEEEEECTTSSE---------EEEEETTSCEEEEETTTTEEE---------EEEC----CTTCCSCEEEEEECTTSSEEE
T ss_pred eEEEEEeCCCCE---------EEEEeCCCeEEEEECCCCcEE---------EEEc----CCCcccceeEEEEeCCCCEEE
Confidence 999999999999 999999999987765432111 0111 11234468899999999 999
Q ss_pred EEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEe
Q 043350 455 SGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILD 505 (1133)
Q Consensus 455 sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd 505 (1133)
+|+.||+|++||+ ++.++..+.+|...|++ |+|+|++|++|+.||+|+||+
T Consensus 301 ~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 301 AGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999999 78899999999999998 999999999999999999996
No 27
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.98 E-value=1.1e-30 Score=335.05 Aligned_cols=394 Identities=10% Similarity=0.097 Sum_probs=295.7
Q ss_pred CCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecC
Q 043350 98 GPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQE 174 (1133)
Q Consensus 98 ~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~D 174 (1133)
+|+..+.. +.|+|++.+||+|+.||.|+||+..+ +.. +..+.+|.. .|++++ ++++++|+ +.|
T Consensus 11 ~h~~~v~~---i~~sp~~~~la~~~~~g~v~iwd~~~---~~~-~~~~~~~~~-------~v~~~~~s~~~~~l~~~~~d 76 (814)
T 3mkq_A 11 NRSDRVKG---IDFHPTEPWVLTTLYSGRVEIWNYET---QVE-VRSIQVTET-------PVRAGKFIARKNWIIVGSDD 76 (814)
T ss_dssp EECSCEEE---EEECSSSSEEEEEETTSEEEEEETTT---TEE-EEEEECCSS-------CEEEEEEEGGGTEEEEEETT
T ss_pred cCCCceEE---EEECCCCCEEEEEeCCCEEEEEECCC---Cce-EEEEecCCC-------cEEEEEEeCCCCEEEEEeCC
Confidence 45555444 88999999999999999999999873 555 788899998 999999 99999888 789
Q ss_pred CcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCccc
Q 043350 175 CGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKE 254 (1133)
Q Consensus 175 g~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~ 254 (1133)
+.|++||+.+... ......|..+|.+++|+|++++|++|+.||+|++|++..+ ...
T Consensus 77 g~i~vw~~~~~~~-----------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~-------~~~ 132 (814)
T 3mkq_A 77 FRIRVFNYNTGEK-----------------VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN-------WAL 132 (814)
T ss_dssp SEEEEEETTTCCE-----------------EEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT-------SEE
T ss_pred CeEEEEECCCCcE-----------------EEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC-------ceE
Confidence 9999999876422 2235568889999999999999999999999999999761 144
Q ss_pred ccccccCCCCeEEEEEee-CCc-EEEEeCCCcEEEEeCCCC-------------ceeeEeCC--CCceEEEEeecce--E
Q 043350 255 GLSWQAHRGPVLAMIFSS-QGD-LWSGGEGGVIKIWPWESI-------------EKSLSLKP--EEKHMAALLVERS--F 315 (1133)
Q Consensus 255 ~~~l~gH~~~V~sl~fsp-~g~-L~Sgs~DgtI~iWdl~~~-------------~~~l~~~~--~~~~l~s~~~d~s--~ 315 (1133)
...+.+|...|.+++|+| ++. |++++.||+|++||+... ...+.+.+ ++..+++++.++. +
T Consensus 133 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~ 212 (814)
T 3mkq_A 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212 (814)
T ss_dssp EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEE
T ss_pred EEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEE
Confidence 567889999999999999 777 999999999999998652 34556666 7888888888887 8
Q ss_pred EEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceE
Q 043350 316 IDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKV 395 (1133)
Q Consensus 316 ~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v 395 (1133)
|++.....+..+..+...-..+..+.++...+..+.|+.|++||+.+++.+..+..+...+.+++|+|++... +
T Consensus 213 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~ 286 (814)
T 3mkq_A 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKN------Y 286 (814)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGG------E
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCce------E
Confidence 8887766666555444333344455556656666789999999999999999999999999999999998720 0
Q ss_pred EEEeeCCCCcccccccc---ccceeeccC------------CceEEEEEe-----cCC--------cccCCCCCEEEEEE
Q 043350 396 KFVSSNKKEKPHGFLQR---SRNAIMGAA------------DAVRRVATR-----GAG--------AFVDDTKRTEAMVL 447 (1133)
Q Consensus 396 ~lasgs~Dg~i~~~~~~---~~~~~~~~~------------~~V~~v~~~-----p~g--------~~~~h~~~V~sl~~ 447 (1133)
+++++.++.+. +... ....+.... ..+...... ..+ .+..+...+.++++
T Consensus 287 -~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (814)
T 3mkq_A 287 -IASGFDNGFTV-LSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAH 364 (814)
T ss_dssp -EEEEETTEEEE-EECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEE
T ss_pred -EEEEeCCCEEE-EEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEE
Confidence 45555444332 1110 000000000 000000000 000 02344556889999
Q ss_pred CCCC-eEEEEecCCeEEEEeCCCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCCCcceeeeccccCeEEe
Q 043350 448 TADG-MIWSGCTNGLLVQWDGNGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGNLTASWIAHSSPVLKL 524 (1133)
Q Consensus 448 spdg-~L~sgs~DG~I~vWd~~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~~l~~~~~H~~~V~~l 524 (1133)
+|+| ++++++ ||.+.+|+........ .+.|.+ |+|+|++|++++.+|.|++|+ .+.+|...|.++
T Consensus 365 spdg~~la~~~-~~~~~i~~~~~~~~~~----~~~i~~~~~spdg~~la~~~~~g~v~l~~-------~~~~~~~~v~~~ 432 (814)
T 3mkq_A 365 SPNGRFVTVVG-DGEYVIYTALAWRNKA----FGKCQDFVWGPDSNSYALIDETGQIKYYK-------NFKEVTSWSVPM 432 (814)
T ss_dssp CTTSSEEEEEE-TTEEEEEETTTTEEEE----EEECSEEEECTTSSCEEEECTTCCEEEEE-------TTEECTTCCCCC
T ss_pred CCCCCEEEEec-CCEEEEEECccccccC----CCceEEEEEeCCCCeEEEEeCCCcEEEEE-------CCCCccceEEcC
Confidence 9999 777777 9999999986543322 344555 999999999999999999996 456788899999
Q ss_pred eec--c---cceeeecccCCeeeccccCCC
Q 043350 525 AVG--V---DHIYSLAAHGGIRGWTFTSPS 549 (1133)
Q Consensus 525 ~fs--~---~~L~S~s~Dg~I~lW~l~s~~ 549 (1133)
.|+ + ++|++++.|+.|++||+.+..
T Consensus 433 ~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~ 462 (814)
T 3mkq_A 433 HSAIDRLFSGALLGVKSDGFVYFFDWDNGT 462 (814)
T ss_dssp SSCCCEEECSSSEEEEETTEEEEECTTTCC
T ss_pred CcCccceecceEEEEecCCEEEEEECCcCc
Confidence 999 3 499999999999999987643
No 28
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.98 E-value=6.3e-31 Score=308.47 Aligned_cols=354 Identities=12% Similarity=0.097 Sum_probs=252.6
Q ss_pred eEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCC-eEE--ecCCcEEEeeC----CCCCC------cC-c
Q 043350 126 IFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQ-LWA--GQECGVRFWNL----EDSYE------PG-A 190 (1133)
Q Consensus 126 ~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~-lla--s~Dg~VrvWdl----~~~~~------~~-~ 190 (1133)
.+.+|+.. .....+....|.. .|++++ ++++. +|+ +.|+.|++|++ .+... .. .
T Consensus 26 ~~~~~~~~----~~~~~~~~~~~~~-------~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 94 (425)
T 1r5m_A 26 IDSSDDLD----GFVKILKEIVKLD-------NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAEL 94 (425)
T ss_dssp ------------CCCEECEEEEECS-------CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEE
T ss_pred ccccccch----hhhhheeeeeccC-------ceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccc
Confidence 34567765 2222333444556 899999 99999 888 78999999999 55321 00 0
Q ss_pred CCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEE
Q 043350 191 GIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIF 270 (1133)
Q Consensus 191 gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~f 270 (1133)
.+. .........|..+|.|++|+|++++|++|+.||.|++|+... ..+..+.+|...|++++|
T Consensus 95 ~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~---------~~~~~~~~~~~~v~~~~~ 157 (425)
T 1r5m_A 95 RHP--------FALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTG---------ALLNVLNFHRAPIVSVKW 157 (425)
T ss_dssp ECC--------CCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEETTS---------CEEEEECCCCSCEEEEEE
T ss_pred ccc--------ccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------CeeeeccCCCccEEEEEE
Confidence 000 000001223677999999999999999999999999999665 667788899999999999
Q ss_pred eeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccC-ceeeeccccCCCCCeEEEEecCCceEEE
Q 043350 271 SSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRA-QVTVNGACSISSTEIKCMLSDHARARVW 348 (1133)
Q Consensus 271 sp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~-~~~v~~~~~~~~~~~~~l~S~d~~i~vw 348 (1133)
+|+++ |++++.||.|++||+.+......+........... ...... ...+..+...+ +.. ++++
T Consensus 158 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~-~~~~------- 223 (425)
T 1r5m_A 158 NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSIN----AENHSGDGSLGVDVEWVD--DDK-FVIP------- 223 (425)
T ss_dssp CTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-------------------CCCBSCCEEEE--TTE-EEEE-------
T ss_pred CCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcccee----eccccCCcceeeEEEEcC--CCE-EEEE-------
Confidence 99999 99999999999999987433222221111000000 000000 00011111111 111 2233
Q ss_pred ecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEE
Q 043350 349 CAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVA 428 (1133)
Q Consensus 349 ss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~ 428 (1133)
+.++.|++||+.+++.+..+..|...+.+++|+|++.+ +++++.|+.++.|+.+.... +
T Consensus 224 -~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~---------l~~~~~d~~i~i~d~~~~~~-------~---- 282 (425)
T 1r5m_A 224 -GPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKL---------LLSASDDGTLRIWHGGNGNS-------Q---- 282 (425)
T ss_dssp -CGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTE---------EEEEETTSCEEEECSSSBSC-------S----
T ss_pred -cCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCE---------EEEEcCCCEEEEEECCCCcc-------c----
Confidence 67899999999999999999999999999999999999 99999999998665432211 0
Q ss_pred EecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEe
Q 043350 429 TRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILD 505 (1133)
Q Consensus 429 ~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd 505 (1133)
..+..|...|.+++++|++.+++++.||.|++||+ +++++..+..|...|.+ |+|++++|++|+.||.|++||
T Consensus 283 ----~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~ 358 (425)
T 1r5m_A 283 ----NCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD 358 (425)
T ss_dssp ----EEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ----eEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEE
Confidence 11335677788888889888999999999999999 66888889999999998 999999999999999999999
Q ss_pred CCC-C--------------------cceeeecccc--CeEEeeec--ccceeeecccCCeeecccc
Q 043350 506 LDG-N--------------------LTASWIAHSS--PVLKLAVG--VDHIYSLAAHGGIRGWTFT 546 (1133)
Q Consensus 506 ~~g-~--------------------~l~~~~~H~~--~V~~l~fs--~~~L~S~s~Dg~I~lW~l~ 546 (1133)
+.. + ++..+.+|.. .|++++|+ +++|++++.||.|++|++.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 359 LKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred CCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 873 4 6788899976 99999999 7899999999999999974
No 29
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.98 E-value=8.5e-31 Score=307.61 Aligned_cols=325 Identities=10% Similarity=0.098 Sum_probs=247.0
Q ss_pred cccCCCCC-EEEEe----------cCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecC
Q 043350 109 KPFQPMVE-FIGSG----------GGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQE 174 (1133)
Q Consensus 109 ~~~~p~g~-~lasg----------s~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~D 174 (1133)
..|+|+++ +|++| +.||.|++|+.......++ +..+ .|.. .|.+++ ++++.+|+ +.|
T Consensus 18 ~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~-~~~~-~~~~-------~v~~~~~s~~~~~l~~~~~d 88 (416)
T 2pm9_A 18 FAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP-IASL-QVDS-------KFNDLDWSHNNKIIAGALDN 88 (416)
T ss_dssp CCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC-SCCC-CCSS-------CEEEEEECSSSSCEEEEESS
T ss_pred EeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE-EEEE-ecCC-------ceEEEEECCCCCeEEEEccC
Confidence 77899997 99999 8999999999874211112 3333 4666 899999 99999888 789
Q ss_pred CcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCCCCCC-Cc
Q 043350 175 CGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCG-NRLVWTGHKDGKIRSWKMDQTLDDANN-PF 252 (1133)
Q Consensus 175 g~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd-~~~LaSgs~Dg~V~vWd~~~~~~~~~~-~~ 252 (1133)
+.|++|++....... ........|..+|.|++|+|+ +++|++|+.||+|++||+......... ..
T Consensus 89 g~v~vw~~~~~~~~~-------------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 155 (416)
T 2pm9_A 89 GSLELYSTNEANNAI-------------NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTP 155 (416)
T ss_dssp SCEEEECCSSTTSCC-------------CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCC
T ss_pred CeEEEeecccccccc-------------cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccc
Confidence 999999997621110 002345578889999999998 899999999999999999863210000 11
Q ss_pred ccccccccCCCCeEEEEEeeC-Cc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccC
Q 043350 253 KEGLSWQAHRGPVLAMIFSSQ-GD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSI 330 (1133)
Q Consensus 253 ~~~~~l~gH~~~V~sl~fsp~-g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~ 330 (1133)
.....+.+|...|++++|+|+ +. |++++.||.|++||+++..
T Consensus 156 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~------------------------------------ 199 (416)
T 2pm9_A 156 LTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK------------------------------------ 199 (416)
T ss_dssp BCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE------------------------------------
T ss_pred cccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC------------------------------------
Confidence 122345789999999999999 56 9999999999999986421
Q ss_pred CCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEE------ecCCcceeEEEeCCCC-CccccccceEEEEeeCCC
Q 043350 331 SSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVF------NIEGHIENRVDTQSVQ-DQPVEDEMKVKFVSSNKK 403 (1133)
Q Consensus 331 ~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~------~~h~~~v~~l~~sp~g-~~~~e~e~~v~lasgs~D 403 (1133)
.+..+ .+|...+.+++|+|++ .+ +++++.|
T Consensus 200 ----------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------l~~~~~d 236 (416)
T 2pm9_A 200 ----------------------------------EVIHLSYTSPNSGIKQQLSVVEWHPKNSTR---------VATATGS 236 (416)
T ss_dssp ----------------------------------EEEEECCCCCSSCCCCCEEEEEECSSCTTE---------EEEEECC
T ss_pred ----------------------------------cceEEeccccccccCCceEEEEECCCCCCE---------EEEEECC
Confidence 11111 2336779999999997 57 8999999
Q ss_pred C---ccccccccccceeeccCCceEEEEEecCCccc-CCCCCEEEEEECC-CC-eEEEEecCCeEEEEeC-CCCeeEEEe
Q 043350 404 E---KPHGFLQRSRNAIMGAADAVRRVATRGAGAFV-DDTKRTEAMVLTA-DG-MIWSGCTNGLLVQWDG-NGNRVSDIL 476 (1133)
Q Consensus 404 g---~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~-~h~~~V~sl~~sp-dg-~L~sgs~DG~I~vWd~-~g~~l~~~~ 476 (1133)
+ .|+.|+.+.... +...+. +|...|.+++|+| ++ +|++++.||.|++||+ +++++..+.
T Consensus 237 ~~~~~i~~~d~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~ 302 (416)
T 2pm9_A 237 DNDPSILIWDLRNANT--------------PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP 302 (416)
T ss_dssp SSSCCCCEEETTSTTS--------------CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE
T ss_pred CCCceEEEEeCCCCCC--------------CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec
Confidence 8 887665442110 011234 6778888999998 77 9999999999999999 678999999
Q ss_pred cCCcceeE--EecCC-CEEEEEecCCeEEEEeCCC-Ccceee-----------------------------------ecc
Q 043350 477 HHQCAVQC--FCTYG-SRMYVGYVSGYLQILDLDG-NLTASW-----------------------------------IAH 517 (1133)
Q Consensus 477 ~h~~~V~~--fs~dg-~~Lasgs~DG~I~vwd~~g-~~l~~~-----------------------------------~~H 517 (1133)
.|...|.+ |+|++ .+|++++.||.|++||+.. ...... ..|
T Consensus 303 ~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (416)
T 2pm9_A 303 ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWY 382 (416)
T ss_dssp CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTT
T ss_pred CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccc
Confidence 99999987 99999 8999999999999999874 211111 116
Q ss_pred ccCeEEeeec--ccceeeecccCCeeeccccCC
Q 043350 518 SSPVLKLAVG--VDHIYSLAAHGGIRGWTFTSP 548 (1133)
Q Consensus 518 ~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s~ 548 (1133)
..+|.+++|+ +++|++++.||.|++|++.+.
T Consensus 383 ~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 383 GEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 7788889998 899999999999999998763
No 30
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.98 E-value=2.3e-30 Score=299.37 Aligned_cols=277 Identities=19% Similarity=0.246 Sum_probs=221.6
Q ss_pred eeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCc
Q 043350 206 FYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGV 284 (1133)
Q Consensus 206 ~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~Dgt 284 (1133)
..+.+|..+|+|++|+|++++|+||+.||+|+|||.... +....+..|...|.+++|+|+|. |++|+.|+.
T Consensus 58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~--------~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~ 129 (354)
T 2pbi_B 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT--------NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNK 129 (354)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--------CEEEEEECSSSCCCEEEECTTSSEEEEESTTSE
T ss_pred EEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC--------CcceEEecCCCCEEEEEECCCCCEEEEeeCCCC
Confidence 346789999999999999999999999999999998751 44556778999999999999999 999999999
Q ss_pred EEEEeCCCC--------ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCcee
Q 043350 285 IKIWPWESI--------EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFS 356 (1133)
Q Consensus 285 I~iWdl~~~--------~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~ 356 (1133)
+++|++... ...+..+... +..+...+. ...++++ +.|++|+
T Consensus 130 i~v~~~~~~~~~~~~~~~~~~~~h~~~--------------------v~~~~~~~~--~~~l~t~--------s~D~~v~ 179 (354)
T 2pbi_B 130 CSVYPLTFDKNENMAAKKKSVAMHTNY--------------------LSACSFTNS--DMQILTA--------SGDGTCA 179 (354)
T ss_dssp EEEEECCCCTTCCSGGGCEEEEECSSC--------------------EEEEEECSS--SSEEEEE--------ETTSEEE
T ss_pred EEEEEEeccccccccccceeeeccCCc--------------------EEEEEEeCC--CCEEEEE--------eCCCcEE
Confidence 999998642 1111111111 111111122 2233444 7799999
Q ss_pred EeecCCCceeEEEecCCcceeEEEeCCC--CCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCc
Q 043350 357 LWDARSKELLKVFNIEGHIENRVDTQSV--QDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGA 434 (1133)
Q Consensus 357 lWD~~tg~~l~~~~~h~~~v~~l~~sp~--g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~ 434 (1133)
+||+.+++++..+.+|...|.+++++|+ +.. |++|+.|++|+.|+.+....+ . .
T Consensus 180 lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~---------l~sgs~Dg~v~~wd~~~~~~~-------~--------~ 235 (354)
T 2pbi_B 180 LWDVESGQLLQSFHGHGADVLCLDLAPSETGNT---------FVSGGCDKKAMVWDMRSGQCV-------Q--------A 235 (354)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECCCSSCCE---------EEEEETTSCEEEEETTTCCEE-------E--------E
T ss_pred EEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE---------EEEEeCCCeEEEEECCCCcEE-------E--------E
Confidence 9999999999999999999999999884 568 999999999987765432211 0 1
Q ss_pred ccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCC-CCeeEEEecC--CcceeE--EecCCCEEEEEecCCeEEEEeCC-
Q 043350 435 FVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGN-GNRVSDILHH--QCAVQC--FCTYGSRMYVGYVSGYLQILDLD- 507 (1133)
Q Consensus 435 ~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~-g~~l~~~~~h--~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~- 507 (1133)
+.+|...|.+++|+|++ .|++|+.||+|++||+. +..+..+..+ ...+.+ |+|+|++|++|+.||+|++||+.
T Consensus 236 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~ 315 (354)
T 2pbi_B 236 FETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLK 315 (354)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCC
Confidence 35678889999999999 99999999999999994 4555555443 335665 99999999999999999999985
Q ss_pred CCcceeeeccccCeEEeeec--ccceeeecccCCeeecc
Q 043350 508 GNLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWT 544 (1133)
Q Consensus 508 g~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~ 544 (1133)
++.+..+.+|.+.|++++|+ +++|+|++.||+|++|+
T Consensus 316 ~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 316 GSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 67788899999999999999 88999999999999996
No 31
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.98 E-value=1.5e-30 Score=299.75 Aligned_cols=282 Identities=11% Similarity=0.066 Sum_probs=198.2
Q ss_pred ccccCCCCCEEEEecCCCeEEeccCCCC-------CCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE-ecCCcEE
Q 043350 108 HKPFQPMVEFIGSGGGTGIFKVPSRAAV-------HPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA-GQECGVR 178 (1133)
Q Consensus 108 ~~~~~p~g~~lasgs~dg~irlW~~~~~-------~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla-s~Dg~Vr 178 (1133)
.+.|+|||++|++++ |+++|+|+.... .+..........|.. .|.+++ ++++.+++ +.||+|+
T Consensus 35 ~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~v~~~~~s~d~~l~~~s~dg~v~ 106 (344)
T 4gqb_B 35 AARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEA-------GVADLTWVGERGILVASDSGAVE 106 (344)
T ss_dssp EEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESS-------CEEEEEEETTTEEEEEETTSEEE
T ss_pred EEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCC-------CEEEEEEeCCCeEEEEECCCEEE
Confidence 378999999999888 778889873210 001110111222333 799999 99988887 9999999
Q ss_pred EeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCccccccc
Q 043350 179 FWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSW 258 (1133)
Q Consensus 179 vWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l 258 (1133)
|||+.+..... ...+...+|..+|+||+|+|++++|++|+.|++|++||+.. .+.+..+
T Consensus 107 lWd~~~~~~~~-------------~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~--------~~~~~~~ 165 (344)
T 4gqb_B 107 LWELDENETLI-------------VSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ--------QVVLSSY 165 (344)
T ss_dssp EEEECTTSSCE-------------EEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------TEEEEEE
T ss_pred EEeccCCCcee-------------EeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC--------CcEEEEE
Confidence 99998642211 00234557899999999999999999999999999999986 1567788
Q ss_pred ccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceeeEe--CCCCceEEEEeecceEEEccCceeeeccccCCCCC
Q 043350 259 QAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSLSL--KPEEKHMAALLVERSFIDLRAQVTVNGACSISSTE 334 (1133)
Q Consensus 259 ~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l~~--~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~ 334 (1133)
.+|.+.|++++|++++. |+||+.|++|++||+++......+ ...+.. +..+...+ .+
T Consensus 166 ~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~------------------~~~~~~~p-~~ 226 (344)
T 4gqb_B 166 RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYL------------------PTSLAWHP-QQ 226 (344)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCC------------------EEEEEECS-SC
T ss_pred cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeecc------------------ceeeeecC-CC
Confidence 99999999999999986 899999999999999874322222 111111 11111112 12
Q ss_pred eEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccccccc
Q 043350 335 IKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSR 414 (1133)
Q Consensus 335 ~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~ 414 (1133)
..+++++ +.|+.|++||+++++++..+.+|...|++++|+|++..
T Consensus 227 ~~~l~sg--------~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~--------------------------- 271 (344)
T 4gqb_B 227 SEVFVFG--------DENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVP--------------------------- 271 (344)
T ss_dssp TTEEEEE--------ETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSC---------------------------
T ss_pred CcceEEe--------ccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCe---------------------------
Confidence 2334444 78999999999999988888888777777777776532
Q ss_pred ceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeCCCCeeEEEecCCcceeE--EecCCC-E
Q 043350 415 NAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGNGNRVSDILHHQCAVQC--FCTYGS-R 491 (1133)
Q Consensus 415 ~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~g~~l~~~~~h~~~V~~--fs~dg~-~ 491 (1133)
+|++|+.||+|++||.....+..+.+|...|++ |+|+++ +
T Consensus 272 -------------------------------------~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~l 314 (344)
T 4gqb_B 272 -------------------------------------FLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSL 314 (344)
T ss_dssp -------------------------------------CEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTE
T ss_pred -------------------------------------EEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeE
Confidence 256777777778888755555566778777777 777775 4
Q ss_pred EEEEecCCeEEEEeCCCC
Q 043350 492 MYVGYVSGYLQILDLDGN 509 (1133)
Q Consensus 492 Lasgs~DG~I~vwd~~g~ 509 (1133)
|++|+.||+|++|++..+
T Consensus 315 las~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 315 LTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EEEEETTSCEEEEECCC-
T ss_pred EEEEcCCCeEEEEECCCC
Confidence 567777888888887653
No 32
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.98 E-value=3.4e-30 Score=291.10 Aligned_cols=280 Identities=16% Similarity=0.147 Sum_probs=221.2
Q ss_pred eeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCc
Q 043350 206 FYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGV 284 (1133)
Q Consensus 206 ~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~Dgt 284 (1133)
..+..|..+|.+++|+|++++|++|+.||+|++||+.. ...+..+.+|..+|.+++|+|+++ |++|+.|++
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~ 78 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYET--------QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR 78 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT--------TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSE
T ss_pred EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC--------CceeEEeeccCCcEEEEEEeCCCCEEEEECCCCE
Confidence 35678899999999999999999999999999999986 145668889999999999999999 999999999
Q ss_pred EEEEeCCCCceeeEe--CCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCC
Q 043350 285 IKIWPWESIEKSLSL--KPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARS 362 (1133)
Q Consensus 285 I~iWdl~~~~~~l~~--~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~t 362 (1133)
|++||+.+......+ +..... .+.+ .++..+++++ +.|++|++||+++
T Consensus 79 i~vwd~~~~~~~~~~~~h~~~v~---------~~~~-------------~~~~~~l~sg--------s~D~~v~lWd~~~ 128 (304)
T 2ynn_A 79 IRVFNYNTGEKVVDFEAHPDYIR---------SIAV-------------HPTKPYVLSG--------SDDLTVKLWNWEN 128 (304)
T ss_dssp EEEEETTTCCEEEEEECCSSCEE---------EEEE-------------CSSSSEEEEE--------ETTSCEEEEEGGG
T ss_pred EEEEECCCCcEEEEEeCCCCcEE---------EEEE-------------cCCCCEEEEE--------CCCCeEEEEECCC
Confidence 999999875333222 332222 1111 2333345566 7899999999998
Q ss_pred C-ceeEEEecCCcceeEEEeCC-CCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCC
Q 043350 363 K-ELLKVFNIEGHIENRVDTQS-VQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTK 440 (1133)
Q Consensus 363 g-~~l~~~~~h~~~v~~l~~sp-~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~ 440 (1133)
+ .+...+.+|...|.+++|+| ++.. +++|+.|++|+.|+.+.... ... + ..++..
T Consensus 129 ~~~~~~~~~~h~~~v~~v~~~p~~~~~---------l~sgs~D~~v~iwd~~~~~~-------~~~--~-----~~~~~~ 185 (304)
T 2ynn_A 129 NWALEQTFEGHEHFVMCVAFNPKDPST---------FASGCLDRTVKVWSLGQSTP-------NFT--L-----TTGQER 185 (304)
T ss_dssp TTEEEEEECCCCSCEEEEEECTTCTTE---------EEEEETTSEEEEEETTCSSC-------SEE--E-----ECCCTT
T ss_pred CcchhhhhcccCCcEEEEEECCCCCCE---------EEEEeCCCeEEEEECCCCCc-------cce--e-----ccCCcC
Confidence 7 55678899999999999999 5678 99999999998666432111 000 1 123455
Q ss_pred CEEEEEECC--CC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCC-CCccee
Q 043350 441 RTEAMVLTA--DG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLD-GNLTAS 513 (1133)
Q Consensus 441 ~V~sl~~sp--dg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~ 513 (1133)
.+..+.++| ++ +|++|+.||+|++||+ .++++.++.+|...|.+ |+|++.+|++|+.||+|++||+. ++++..
T Consensus 186 ~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~ 265 (304)
T 2ynn_A 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265 (304)
T ss_dssp CEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred cEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeee
Confidence 677777765 66 9999999999999999 66899999999999998 99999999999999999999997 578889
Q ss_pred eeccccCeEEeeec--c-c-ceeeecccCCeeeccccC
Q 043350 514 WIAHSSPVLKLAVG--V-D-HIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 514 ~~~H~~~V~~l~fs--~-~-~L~S~s~Dg~I~lW~l~s 547 (1133)
+..|...|++++|+ + . ++++++ |..+.+|++..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~asg~-~~g~~~~~~~~ 302 (304)
T 2ynn_A 266 LNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGN 302 (304)
T ss_dssp ECCSSSSEEEEEECTTCGGGCEEEEE-TTEEEEEECC-
T ss_pred ccCCCccEEEEEECCCCCceEEEEec-CCceEEEEecc
Confidence 99999999999987 3 3 355555 55677887654
No 33
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.97 E-value=4.8e-30 Score=291.25 Aligned_cols=314 Identities=11% Similarity=0.074 Sum_probs=251.6
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE-ecCCcEEEeeCCCCC
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA-GQECGVRFWNLEDSY 186 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla-s~Dg~VrvWdl~~~~ 186 (1133)
..|+|+|++++++..++.+.+|.... ... .....+|.. .|++++ ++++++++ +.|+.|++||+....
T Consensus 15 ~~~s~dg~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~h~~-------~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~ 83 (337)
T 1gxr_A 15 FHVTADGQMQPVPFPPDALIGPGIPR---HAR-QINTLNHGE-------VVCAVTISNPTRHVYTGGKGCVKVWDISHPG 83 (337)
T ss_dssp EEECSSSCEEECCCCTTSSSSTTCCS---EEE-EEEEECCSS-------CCCEEEECSSSSEEEEECBSEEEEEETTSTT
T ss_pred EEECCCCCEEEeecCCCcEeccccCC---ccc-cceeccCCC-------ceEEEEEecCCcEEEEcCCCeEEEEECCCCC
Confidence 77899999999998888777775441 222 344457888 899999 99999999 669999999997632
Q ss_pred CcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeE
Q 043350 187 EPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVL 266 (1133)
Q Consensus 187 ~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~ 266 (1133)
.... ........|..+|.+++|+|++++|++|+.||.|++||+..... .....+.+|...|+
T Consensus 84 ~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~------~~~~~~~~~~~~i~ 145 (337)
T 1gxr_A 84 NKSP------------VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP------RIKAELTSSAPACY 145 (337)
T ss_dssp CCSC------------SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--------EEEEEEECSSSCEE
T ss_pred ceee------------eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc------ceeeecccCCCceE
Confidence 1110 00111225788999999999999999999999999999986221 34567788999999
Q ss_pred EEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCce
Q 043350 267 AMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARA 345 (1133)
Q Consensus 267 sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i 345 (1133)
+++|+|+++ |++++.||.|++||+++
T Consensus 146 ~~~~~~~~~~l~~~~~dg~v~~~d~~~----------------------------------------------------- 172 (337)
T 1gxr_A 146 ALAISPDSKVCFSCCSDGNIAVWDLHN----------------------------------------------------- 172 (337)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTT-----------------------------------------------------
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCC-----------------------------------------------------
Confidence 999999999 99999999999998742
Q ss_pred EEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceE
Q 043350 346 RVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVR 425 (1133)
Q Consensus 346 ~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~ 425 (1133)
++.+..+..|...+.+++|+|++.+ +++++.|+.++.|+.+..... .
T Consensus 173 -----------------~~~~~~~~~~~~~i~~~~~~~~~~~---------l~~~~~dg~i~~~d~~~~~~~-------~ 219 (337)
T 1gxr_A 173 -----------------QTLVRQFQGHTDGASCIDISNDGTK---------LWTGGLDNTVRSWDLREGRQL-------Q 219 (337)
T ss_dssp -----------------TEEEEEECCCSSCEEEEEECTTSSE---------EEEEETTSEEEEEETTTTEEE-------E
T ss_pred -----------------CceeeeeecccCceEEEEECCCCCE---------EEEEecCCcEEEEECCCCceE-------e
Confidence 3344556667888999999999999 999999999986654432211 1
Q ss_pred EEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCCCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEE
Q 043350 426 RVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGNGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQ 502 (1133)
Q Consensus 426 ~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~ 502 (1133)
. ..+...+.+++++|++ .|++++.||.|++|++.......+..|...|.+ |+|++++|++++.||.|+
T Consensus 220 ~---------~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 290 (337)
T 1gxr_A 220 Q---------HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLN 290 (337)
T ss_dssp E---------EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred e---------ecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEE
Confidence 1 1245678899999999 999999999999999976666778889999998 999999999999999999
Q ss_pred EEeCCCCcceeeeccccCeEEeeec--ccceeeecccCCeeecccc
Q 043350 503 ILDLDGNLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFT 546 (1133)
Q Consensus 503 vwd~~g~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~ 546 (1133)
+||+..........|...|.+++|+ +++|++++.||.|++|++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 291 AWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred EEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 9999854333456789999999999 8899999999999999963
No 34
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.97 E-value=8.1e-31 Score=301.95 Aligned_cols=290 Identities=10% Similarity=0.099 Sum_probs=222.2
Q ss_pred ccccCCCCCEEEEecCCCeEEeccCCCCCCCCCC--eeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeC
Q 043350 108 HKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPP--CLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNL 182 (1133)
Q Consensus 108 ~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~--~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl 182 (1133)
.+.|+|+|++||+|+.||+|+||+... +... .....+|.. .|++++ ++++++|+ +.|++|++|++
T Consensus 21 ~l~~sp~g~~las~~~D~~i~iw~~~~---~~~~~~~~~~~~h~~-------~v~~~~~sp~g~~l~s~s~D~~v~iw~~ 90 (345)
T 3fm0_A 21 FLAWNPAGTLLASCGGDRRIRIWGTEG---DSWICKSVLSEGHQR-------TVRKVAWSPCGNYLASASFDATTCIWKK 90 (345)
T ss_dssp EEEECTTSSCEEEEETTSCEEEEEEET---TEEEEEEEECSSCSS-------CEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCC---CcceeeeeeccccCC-------cEEEEEECCCCCEEEEEECCCcEEEEEc
Confidence 478999999999999999999999863 2211 122367888 999999 99999998 88999999998
Q ss_pred CCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCC
Q 043350 183 EDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHR 262 (1133)
Q Consensus 183 ~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~ 262 (1133)
....... ...+.+|..+|.+++|+|++++|++|+.|++|++||+... .....+..+.+|.
T Consensus 91 ~~~~~~~---------------~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~-----~~~~~~~~~~~h~ 150 (345)
T 3fm0_A 91 NQDDFEC---------------VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE-----DEYECVSVLNSHT 150 (345)
T ss_dssp CCC-EEE---------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT-----SCEEEEEEECCCC
T ss_pred cCCCeEE---------------EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC-----CCeEEEEEecCcC
Confidence 6531100 2245678889999999999999999999999999999762 2224456788999
Q ss_pred CCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEec
Q 043350 263 GPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSD 341 (1133)
Q Consensus 263 ~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~ 341 (1133)
..|.+++|+|+++ |++|+.|++|++|+.+..
T Consensus 151 ~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~------------------------------------------------ 182 (345)
T 3fm0_A 151 QDVKHVVWHPSQELLASASYDDTVKLYREEED------------------------------------------------ 182 (345)
T ss_dssp SCEEEEEECSSSSCEEEEETTSCEEEEEEETT------------------------------------------------
T ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEecCC------------------------------------------------
Confidence 9999999999999 999999999999986321
Q ss_pred CCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccc---eee
Q 043350 342 HARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRN---AIM 418 (1133)
Q Consensus 342 d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~---~~~ 418 (1133)
...++..+.+|...|++++|+|++.+ |++|+.|++|+.|+..... .+.
T Consensus 183 --------------------~~~~~~~~~~h~~~v~~l~~sp~g~~---------l~s~s~D~~v~iW~~~~~~~~~~~~ 233 (345)
T 3fm0_A 183 --------------------DWVCCATLEGHESTVWSLAFDPSGQR---------LASCSDDRTVRIWRQYLPGNEQGVA 233 (345)
T ss_dssp --------------------EEEEEEEECCCSSCEEEEEECTTSSE---------EEEEETTSCEEEEEEECTTCTTCCC
T ss_pred --------------------CEEEEEEecCCCCceEEEEECCCCCE---------EEEEeCCCeEEEeccccCCCCccce
Confidence 00123456778889999999999999 9999999999866532110 000
Q ss_pred -ccCCce-EEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCCCC-----e-----eEEEecCCcceeE-
Q 043350 419 -GAADAV-RRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGNGN-----R-----VSDILHHQCAVQC- 484 (1133)
Q Consensus 419 -~~~~~V-~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g~-----~-----l~~~~~h~~~V~~- 484 (1133)
...... ..+... ...|...|.+++|++++ .|++++.|+.|++|+.... . .....+|...|++
T Consensus 234 ~~~~~~~~~~~~~~----~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 309 (345)
T 3fm0_A 234 CSGSDPSWKCICTL----SGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV 309 (345)
T ss_dssp CC---CEEEEEEEE----CSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEE
T ss_pred eeccCCccceeEEe----cCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEe
Confidence 000111 111111 12378899999999999 9999999999999997431 1 1223469999999
Q ss_pred -EecCC-CEEEEEecCCeEEEEeCCC
Q 043350 485 -FCTYG-SRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 485 -fs~dg-~~Lasgs~DG~I~vwd~~g 508 (1133)
|+|++ .+||+|+.||+|++|++..
T Consensus 310 ~~~p~~~~~laS~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 310 AWNPKEPGLLASCSDDGEVAFWKYQR 335 (345)
T ss_dssp EECSSSTTEEEEEETTSCEEEEEECC
T ss_pred EEeCCCceEEEEcCCCCcEEEEEecC
Confidence 99998 4999999999999999875
No 35
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=3e-30 Score=291.63 Aligned_cols=282 Identities=14% Similarity=0.199 Sum_probs=215.6
Q ss_pred cCCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ec
Q 043350 97 PGPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQ 173 (1133)
Q Consensus 97 ~~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~ 173 (1133)
.+|...+.. +.|+|++++|++|+.||+|++|+..+ +.. +..+..|.. .|.+++ ++++++++ +.
T Consensus 10 ~~h~~~V~~---~~fsp~~~~l~s~~~dg~v~lWd~~~---~~~-~~~~~~~~~-------~v~~~~~~~~~~~l~s~s~ 75 (304)
T 2ynn_A 10 SNRSDRVKG---IDFHPTEPWVLTTLYSGRVELWNYET---QVE-VRSIQVTET-------PVRAGKFIARKNWIIVGSD 75 (304)
T ss_dssp EEECSCEEE---EEECSSSSEEEEEETTSEEEEEETTT---TEE-EEEEECCSS-------CEEEEEEEGGGTEEEEEET
T ss_pred cCCCCceEE---EEECCCCCEEEEEcCCCcEEEEECCC---Cce-eEEeeccCC-------cEEEEEEeCCCCEEEEECC
Confidence 356555555 88999999999999999999999873 444 788889988 899999 99999888 88
Q ss_pred CCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcc
Q 043350 174 ECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFK 253 (1133)
Q Consensus 174 Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~ 253 (1133)
|++|++||+.+... ...+..|...|.+++|+|++++|++|+.||+|++||+..+ ..
T Consensus 76 d~~i~vwd~~~~~~-----------------~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~-------~~ 131 (304)
T 2ynn_A 76 DFRIRVFNYNTGEK-----------------VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN-------WA 131 (304)
T ss_dssp TSEEEEEETTTCCE-----------------EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT-------TE
T ss_pred CCEEEEEECCCCcE-----------------EEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC-------cc
Confidence 99999999876422 2245678889999999999999999999999999999751 13
Q ss_pred cccccccCCCCeEEEEEeeC-Cc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCC
Q 043350 254 EGLSWQAHRGPVLAMIFSSQ-GD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSIS 331 (1133)
Q Consensus 254 ~~~~l~gH~~~V~sl~fsp~-g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~ 331 (1133)
....+.+|...|++++|+|. +. |+||+.|++|++||+........+..... ..+..+...+
T Consensus 132 ~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~-----------------~~v~~~~~~~ 194 (304)
T 2ynn_A 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE-----------------RGVNYVDYYP 194 (304)
T ss_dssp EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCT-----------------TCEEEEEECC
T ss_pred hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCc-----------------CcEEEEEEEE
Confidence 34578899999999999994 56 99999999999999976432222211100 0011111224
Q ss_pred CCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccc
Q 043350 332 STEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQ 411 (1133)
Q Consensus 332 ~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~ 411 (1133)
.++..+++++ +.|++|++||+++++++..+.+|...|..++|+|++.
T Consensus 195 ~~~~~~l~s~--------s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~------------------------- 241 (304)
T 2ynn_A 195 LPDKPYMITA--------SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP------------------------- 241 (304)
T ss_dssp STTCCEEEEE--------ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS-------------------------
T ss_pred cCCCCEEEEE--------cCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCC-------------------------
Confidence 4555566777 8899999999999888877777666665555555443
Q ss_pred cccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecC
Q 043350 412 RSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTY 488 (1133)
Q Consensus 412 ~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~d 488 (1133)
.|++|+.||+|++||. .++++.++..|...++| ++|+
T Consensus 242 ----------------------------------------~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (304)
T 2ynn_A 242 ----------------------------------------IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281 (304)
T ss_dssp ----------------------------------------EEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTT
T ss_pred ----------------------------------------EEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCC
Confidence 4788889999999999 56888889888888888 6787
Q ss_pred CC--EEEEEecCCeEEEEeCC
Q 043350 489 GS--RMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 489 g~--~Lasgs~DG~I~vwd~~ 507 (1133)
+. +|++|+.|| +.+|++.
T Consensus 282 ~~~~~~asg~~~g-~~~~~~~ 301 (304)
T 2ynn_A 282 GRKNYIASGFDNG-FTVLSLG 301 (304)
T ss_dssp CGGGCEEEEETTE-EEEEECC
T ss_pred CCceEEEEecCCc-eEEEEec
Confidence 75 577776555 6677765
No 36
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=7.4e-30 Score=288.62 Aligned_cols=281 Identities=18% Similarity=0.233 Sum_probs=226.3
Q ss_pred ceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCC
Q 043350 205 PFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGG 283 (1133)
Q Consensus 205 ~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~Dg 283 (1133)
.+.+.+|..+|.+++|+|++++|++|+.||.|++|++..+ +....+.+|...|.+++|+|+++ |++|+.|+
T Consensus 16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~ 87 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--------KFEKTISGHKLGISDVAWSSDSNLLVSASDDK 87 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--------CEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc--------ccchhhccCCCceEEEEEcCCCCEEEEECCCC
Confidence 3456789999999999999999999999999999998751 44567889999999999999999 99999999
Q ss_pred cEEEEeCCCCcee--eEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecC
Q 043350 284 VIKIWPWESIEKS--LSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDAR 361 (1133)
Q Consensus 284 tI~iWdl~~~~~~--l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~ 361 (1133)
+|++||+++.... +..+..... .+.+ .++...++++ +.|+.|++||++
T Consensus 88 ~i~vwd~~~~~~~~~~~~~~~~v~---------~~~~-------------~~~~~~l~s~--------~~d~~i~iwd~~ 137 (312)
T 4ery_A 88 TLKIWDVSSGKCLKTLKGHSNYVF---------CCNF-------------NPQSNLIVSG--------SFDESVRIWDVK 137 (312)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEE---------EEEE-------------CSSSSEEEEE--------ETTSCEEEEETT
T ss_pred EEEEEECCCCcEEEEEcCCCCCEE---------EEEE-------------cCCCCEEEEE--------eCCCcEEEEECC
Confidence 9999999874322 222222111 1111 1233344555 789999999999
Q ss_pred CCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCC
Q 043350 362 SKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKR 441 (1133)
Q Consensus 362 tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~ 441 (1133)
+++.+..+..|...+.+++|+|++.+ +++++.|+.|+.|+.+....+ .. + ...+...
T Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~---------l~~~~~d~~i~~wd~~~~~~~-------~~--~-----~~~~~~~ 194 (312)
T 4ery_A 138 TGKCLKTLPAHSDPVSAVHFNRDGSL---------IVSSSYDGLCRIWDTASGQCL-------KT--L-----IDDDNPP 194 (312)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSE---------EEEEETTSCEEEEETTTCCEE-------EE--E-----CCSSCCC
T ss_pred CCEEEEEecCCCCcEEEEEEcCCCCE---------EEEEeCCCcEEEEECCCCcee-------eE--E-----eccCCCc
Confidence 99999999999999999999999999 999999999986665432211 11 1 1345667
Q ss_pred EEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE----Ee-cCCCEEEEEecCCeEEEEeCC-CCccee
Q 043350 442 TEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC----FC-TYGSRMYVGYVSGYLQILDLD-GNLTAS 513 (1133)
Q Consensus 442 V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~----fs-~dg~~Lasgs~DG~I~vwd~~-g~~l~~ 513 (1133)
+..++|+|++ +|++++.||.|++||+ +++++..+..|...+.+ ++ +++.+|++|+.||.|++||+. ++++..
T Consensus 195 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 274 (312)
T 4ery_A 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274 (312)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEE
T ss_pred eEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhh
Confidence 8899999999 9999999999999999 66888888887765443 44 578899999999999999997 467889
Q ss_pred eeccccCeEEeeec--ccceeeec--ccCCeeecccc
Q 043350 514 WIAHSSPVLKLAVG--VDHIYSLA--AHGGIRGWTFT 546 (1133)
Q Consensus 514 ~~~H~~~V~~l~fs--~~~L~S~s--~Dg~I~lW~l~ 546 (1133)
+.+|.+.|.+++|+ +.+|++++ .|++|++|+..
T Consensus 275 ~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 275 LQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred hhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99999999999999 78888886 69999999853
No 37
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.9e-30 Score=293.48 Aligned_cols=292 Identities=11% Similarity=0.075 Sum_probs=218.2
Q ss_pred eeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceee-c-cCCCCeE
Q 043350 142 CLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYE-S-ANTSPTM 216 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~-~-~h~s~V~ 216 (1133)
+..+.+|.. .|++++ +++ +|+ +.|++|++||+....... .... . .|..+|.
T Consensus 7 ~~~~~~h~~-------~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~---------------~~~~~~~~h~~~v~ 62 (330)
T 2hes_X 7 IKSLKLYKE-------KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTL---------------IDVLDETAHKKAIR 62 (330)
T ss_dssp EEEEECCSS-------CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEE---------------EEEECTTCCCSCEE
T ss_pred ceeeccCCC-------ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEE---------------EEEEecCCccCCEE
Confidence 678899999 999999 776 666 889999999987531110 1112 2 3888999
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCce
Q 043350 217 CLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEK 295 (1133)
Q Consensus 217 ~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~ 295 (1133)
+++|+|++++|++|+.|++|+||++..... .......+..+.+|.+.|++++|+|+|+ |+||+.|++|++||++...
T Consensus 63 ~v~~sp~~~~las~s~D~~v~iw~~~~~~~-~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~- 140 (330)
T 2hes_X 63 SVAWRPHTSLLAAGSFDSTVSIWAKEESAD-RTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG- 140 (330)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEC--------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTC-
T ss_pred EEEECCCCCEEEEEeCCCcEEEEEcccCcC-ccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCC-
Confidence 999999999999999999999999864211 0011245667889999999999999999 9999999999999984210
Q ss_pred eeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcc
Q 043350 296 SLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHI 375 (1133)
Q Consensus 296 ~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~ 375 (1133)
...+++..+.+|...
T Consensus 141 -----------------------------------------------------------------~~~~~~~~~~~h~~~ 155 (330)
T 2hes_X 141 -----------------------------------------------------------------EEYECISVLQEHSQD 155 (330)
T ss_dssp -----------------------------------------------------------------CCCEEEEEECCCSSC
T ss_pred -----------------------------------------------------------------CCeEEEEEeccCCCc
Confidence 112345567788899
Q ss_pred eeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCC--C-e
Q 043350 376 ENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTAD--G-M 452 (1133)
Q Consensus 376 v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spd--g-~ 452 (1133)
|.+++|+|++.+ |++|+.|++|+.|+..... ...+ ..+.+|...|.+++|+|+ + .
T Consensus 156 v~~v~~~p~~~~---------l~s~s~D~~i~iW~~~~~~--------~~~~-----~~~~~h~~~v~~~~~~~~~~~~~ 213 (330)
T 2hes_X 156 VKHVIWHPSEAL---------LASSSYDDTVRIWKDYDDD--------WECV-----AVLNGHEGTVWSSDFDKTEGVFR 213 (330)
T ss_dssp EEEEEECSSSSE---------EEEEETTSCEEEEEEETTE--------EEEE-----EEECCCSSCEEEEEECCSSSSCE
T ss_pred eEEEEECCCCCE---------EEEEcCCCeEEEEECCCCC--------eeEE-----EEccCCCCcEEEEEecCCCCeeE
Confidence 999999999999 9999999999866532110 0011 114578888888889888 6 8
Q ss_pred EEEEecCCeEEEEeCCC---------CeeEEEec-CCcceeE--EecCCCEEEEEecCCeEEEEeCCCC---cce-eeec
Q 043350 453 IWSGCTNGLLVQWDGNG---------NRVSDILH-HQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGN---LTA-SWIA 516 (1133)
Q Consensus 453 L~sgs~DG~I~vWd~~g---------~~l~~~~~-h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~---~l~-~~~~ 516 (1133)
|++|+.|++|++|++.+ .++..+.. |...|.+ |+++ .+|++|+.||+|+|||.... ++. .+.+
T Consensus 214 l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~ 292 (330)
T 2hes_X 214 LCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN-GLIASVGADGVLAVYEEVDGEWKVFAKRALC 292 (330)
T ss_dssp EEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTT-SCEEEEETTSCEEEEEEETTEEEEEEEESCT
T ss_pred EEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCC-CEEEEEeCCCEEEEEEcCCCceEEEeccccc
Confidence 99999999999999833 24445554 8889998 7755 48999999999999998643 232 3467
Q ss_pred ccc-CeEEeeec----ccceeeecccCCeeeccccC
Q 043350 517 HSS-PVLKLAVG----VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 517 H~~-~V~~l~fs----~~~L~S~s~Dg~I~lW~l~s 547 (1133)
|.. .|.+++|+ +++|+|+|.||+|++|++..
T Consensus 293 h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 293 HGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 887 89999997 46899999999999999754
No 38
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.97 E-value=3.1e-30 Score=303.68 Aligned_cols=334 Identities=10% Similarity=0.134 Sum_probs=248.0
Q ss_pred ccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCC
Q 043350 108 HKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLED 184 (1133)
Q Consensus 108 ~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~ 184 (1133)
.+.|+|+|++|++|+.||.+++|+..+ +.. ...+..|. .+.... ++++.+|+ +.|+.|++||+.+
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~---~~~-~~~~~~~~--------~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 128 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTII---RDG-SKMLKRAD--------YTAVDTAKLQMRRFILGTTEGDIKVLDSNF 128 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCS---EET-TTTSCSCC--------EEEEEEECSSSCEEEEEETTSCEEEECTTS
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEecc---cce-eeEEecCC--------ceEEEEEecCCCEEEEEECCCCEEEEeCCC
Confidence 378999999999999999999999873 222 33344442 333434 88898888 7899999999875
Q ss_pred CCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCC
Q 043350 185 SYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGP 264 (1133)
Q Consensus 185 ~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~ 264 (1133)
... ......|..+|.|++|+|++++|++|+.|++|++||+..+ +.+..+.+|...
T Consensus 129 ~~~-----------------~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~--------~~~~~~~~h~~~ 183 (420)
T 3vl1_A 129 NLQ-----------------REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG--------SNPRTLIGHRAT 183 (420)
T ss_dssp CEE-----------------EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--------CCCEEEECCSSC
T ss_pred cce-----------------eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC--------cCceEEcCCCCc
Confidence 321 1133478889999999999999999999999999999862 445678899999
Q ss_pred eEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCC
Q 043350 265 VLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHA 343 (1133)
Q Consensus 265 V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~ 343 (1133)
|++++|+|++. |++|+.||+|++||+++......+..... .......+...
T Consensus 184 v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~--------------------------~~~~v~~~~~~-- 235 (420)
T 3vl1_A 184 VTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKEN--------------------------PHDGVNSIALF-- 235 (420)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTB--------------------------TTCCEEEEEEE--
T ss_pred EEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCC--------------------------CCCCccEEEEe--
Confidence 99999999999 99999999999999986432222211100 00000000000
Q ss_pred ceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCc
Q 043350 344 RARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADA 423 (1133)
Q Consensus 344 ~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~ 423 (1133)
...+. .....+...+.+++|+|++.+ +++|+.|+.|+.|+.+.....
T Consensus 236 -----~~~~~-------------~~~~~~~~~v~~~~~s~~~~~---------l~~~~~dg~i~i~d~~~~~~~------ 282 (420)
T 3vl1_A 236 -----VGTDR-------------QLHEISTSKKNNLEFGTYGKY---------VIAGHVSGVITVHNVFSKEQT------ 282 (420)
T ss_dssp -----ECCCS-------------SCGGGCCCCCCTTCSSCTTEE---------EEEEETTSCEEEEETTTCCEE------
T ss_pred -----cCCcc-------------eeeecccCcccceEEcCCCCE---------EEEEcCCCeEEEEECCCCcee------
Confidence 00000 012234567888999999999 999999999986664422211
Q ss_pred eEEEEEecCCcccCCCCCEEEEEECCCC--eEEEEecCCeEEEEeC-CC-CeeEEEec-CCcceeE-EecCCCEEEEEec
Q 043350 424 VRRVATRGAGAFVDDTKRTEAMVLTADG--MIWSGCTNGLLVQWDG-NG-NRVSDILH-HQCAVQC-FCTYGSRMYVGYV 497 (1133)
Q Consensus 424 V~~v~~~p~g~~~~h~~~V~sl~~spdg--~L~sgs~DG~I~vWd~-~g-~~l~~~~~-h~~~V~~-fs~dg~~Lasgs~ 497 (1133)
..+ ...|...|.+++|+|++ +|++|+.||.|++||+ ++ ..+..+.. |...|.+ +.+++++|++|+.
T Consensus 283 ---~~~-----~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~ 354 (420)
T 3vl1_A 283 ---IQL-----PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGF 354 (420)
T ss_dssp ---EEE-----CCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETT
T ss_pred ---EEc-----ccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecC
Confidence 111 23567789999999988 7999999999999999 44 44777776 6777888 7889999999999
Q ss_pred CCeEEEEeCCC----------CcceeeeccccCeEEeeec--cc---ceeeecccCCeeeccccC
Q 043350 498 SGYLQILDLDG----------NLTASWIAHSSPVLKLAVG--VD---HIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 498 DG~I~vwd~~g----------~~l~~~~~H~~~V~~l~fs--~~---~L~S~s~Dg~I~lW~l~s 547 (1133)
||+|++||+.. .....+.+|.+.|.+++|+ ++ .|++++.+|.+.+|+++.
T Consensus 355 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 355 DTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp TEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 99999999864 1233467899999999999 55 688999999999999864
No 39
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=2.3e-30 Score=302.35 Aligned_cols=295 Identities=15% Similarity=0.222 Sum_probs=232.2
Q ss_pred ccCCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--e
Q 043350 96 CPGPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--G 172 (1133)
Q Consensus 96 ~~~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s 172 (1133)
..||...+.+ +.|+|++++|+||+.||+|+||+..+ ++. ...+..|.. .|.+++ +++|++++ +
T Consensus 62 l~gH~~~V~~---~~~sp~~~~l~s~s~D~~v~iWd~~~---~~~-~~~~~~h~~-------~v~~~~~s~~g~~las~~ 127 (380)
T 3iz6_a 62 LQGHSGKVYS---LDWTPEKNWIVSASQDGRLIVWNALT---SQK-THAIKLHCP-------WVMECAFAPNGQSVACGG 127 (380)
T ss_dssp ECCCSSCEEE---EEECTTSSCEEEEETTSEEEEEETTT---TEE-EEEEECCCT-------TCCCCEECTTSSEEEECC
T ss_pred ccccccEEEE---EEEcCCCCEEEEEeCCCeEEEEECCC---Ccc-ceEEecCCC-------CEEEEEECCCCCEEEEee
Confidence 4478777666 88999999999999999999999873 444 788899988 899999 99999999 8
Q ss_pred cCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCCCCCCC
Q 043350 173 QECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCG-NRLVWTGHKDGKIRSWKMDQTLDDANNP 251 (1133)
Q Consensus 173 ~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd-~~~LaSgs~Dg~V~vWd~~~~~~~~~~~ 251 (1133)
.|+.|++|++....... + .........+|.+.|.++.|.|+ +..|++|+.|++|++||+..+.
T Consensus 128 ~d~~v~iw~~~~~~~~~-~---------~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~------ 191 (380)
T 3iz6_a 128 LDSACSIFNLSSQADRD-G---------NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ------ 191 (380)
T ss_dssp SSSCCEEEECCCCSSCC-C---------SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC------
T ss_pred CCCcEEEEECCCCcccc-C---------CccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc------
Confidence 89999999987532110 0 00012245678889999999996 5679999999999999998622
Q ss_pred ccccccc-----ccCCCCeEEEEEee-CCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceee
Q 043350 252 FKEGLSW-----QAHRGPVLAMIFSS-QGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTV 324 (1133)
Q Consensus 252 ~~~~~~l-----~gH~~~V~sl~fsp-~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v 324 (1133)
.+..+ .+|...|.+++|++ +++ |+||+.|++|++||++.
T Consensus 192 --~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~-------------------------------- 237 (380)
T 3iz6_a 192 --RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI-------------------------------- 237 (380)
T ss_dssp --EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTT--------------------------------
T ss_pred --EEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCC--------------------------------
Confidence 22222 68999999999987 567 99999999999999852
Q ss_pred eccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCC
Q 043350 325 NGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKE 404 (1133)
Q Consensus 325 ~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg 404 (1133)
.++.+..+.+|...|++++|+|++.+ |++|+.|+
T Consensus 238 -------------------------------------~~~~~~~~~~h~~~v~~v~~~p~~~~---------l~s~s~D~ 271 (380)
T 3iz6_a 238 -------------------------------------TSRAVRTYHGHEGDINSVKFFPDGQR---------FGTGSDDG 271 (380)
T ss_dssp -------------------------------------TCCCCEEECCCSSCCCEEEECTTSSE---------EEEECSSS
T ss_pred -------------------------------------CCcceEEECCcCCCeEEEEEecCCCe---------EEEEcCCC
Confidence 12344567788899999999999999 99999999
Q ss_pred ccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEE----ecC
Q 043350 405 KPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDI----LHH 478 (1133)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~----~~h 478 (1133)
+|+.|+.+....+. .+...+ .....+...|.+++|+|+| +|++|+.||.|++||. .++.+..+ .+|
T Consensus 272 ~i~lwd~~~~~~~~-------~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h 343 (380)
T 3iz6_a 272 TCRLFDMRTGHQLQ-------VYNREP-DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH 343 (380)
T ss_dssp CEEEEETTTTEEEE-------EECCCC-SSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSC
T ss_pred eEEEEECCCCcEEE-------Eecccc-cccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCC
Confidence 99977655322211 010010 1112334458899999999 9999999999999999 66777776 579
Q ss_pred CcceeE--EecCCCEEEEEecCCeEEEEeCCC
Q 043350 479 QCAVQC--FCTYGSRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 479 ~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g 508 (1133)
...|+| |+|+|++|++|+.||+|++|++.+
T Consensus 344 ~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 344 EGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp CCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred CCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 999998 999999999999999999999875
No 40
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.97 E-value=2.2e-29 Score=295.33 Aligned_cols=298 Identities=15% Similarity=0.182 Sum_probs=224.9
Q ss_pred cCCCccccccceEEEEE-eCCCCeEE-ecCCcEEEeeCCCCC--CcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC
Q 043350 147 PHPLKETQAGRFLRNIA-CTDTQLWA-GQECGVRFWNLEDSY--EPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC 222 (1133)
Q Consensus 147 ~H~~~~~~~g~~V~~v~-s~dg~lla-s~Dg~VrvWdl~~~~--~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp 222 (1133)
.|.. .|.+++ +++|++|| +.++++++|++.+.. ..+.+|..... ..+.........+...|.+++|+|
T Consensus 62 ~h~~-------~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~v~~v~~s~ 133 (393)
T 1erj_A 62 DHTS-------VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANK-DPENLNTSSSPSSDLYIRSVCFSP 133 (393)
T ss_dssp ECSS-------CCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECT
T ss_pred CCCC-------EEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCcccccc-ccccccccccCCCceeEEEEEECC
Confidence 5887 899999 99999999 889999999987632 22222220000 000000000112233599999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCC
Q 043350 223 GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKP 301 (1133)
Q Consensus 223 d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~ 301 (1133)
++++|++|+.|++|++||+.. .+.+..+.+|...|++++|+|+++ |++|+.|++|++||+++.
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~--------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~-------- 197 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIEN--------RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG-------- 197 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTT--------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--------
T ss_pred CCCEEEEEcCCCeEEEEECCC--------CcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC--------
Confidence 999999999999999999986 145667899999999999999999 999999999999998542
Q ss_pred CCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEe
Q 043350 302 EEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDT 381 (1133)
Q Consensus 302 ~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~ 381 (1133)
++...+. +...+.++++
T Consensus 198 --------------------------------------------------------------~~~~~~~-~~~~v~~~~~ 214 (393)
T 1erj_A 198 --------------------------------------------------------------QCSLTLS-IEDGVTTVAV 214 (393)
T ss_dssp --------------------------------------------------------------EEEEEEE-CSSCEEEEEE
T ss_pred --------------------------------------------------------------eeEEEEE-cCCCcEEEEE
Confidence 1111121 2335778899
Q ss_pred CC-CCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecC
Q 043350 382 QS-VQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTN 459 (1133)
Q Consensus 382 sp-~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~D 459 (1133)
+| ++.+ +++|+.|++|+.|+.+....+ ..+. .+.....+|...|.+++|+|+| +|++|+.|
T Consensus 215 ~~~~~~~---------l~~~s~d~~v~iwd~~~~~~~-------~~~~-~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d 277 (393)
T 1erj_A 215 SPGDGKY---------IAAGSLDRAVRVWDSETGFLV-------ERLD-SENESGTGHKDSVYSVVFTRDGQSVVSGSLD 277 (393)
T ss_dssp CSTTCCE---------EEEEETTSCEEEEETTTCCEE-------EEEC-------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ECCCCCE---------EEEEcCCCcEEEEECCCCcEE-------Eeec-ccccCCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence 99 7888 999999999987664432211 1110 0011235788999999999999 99999999
Q ss_pred CeEEEEeCC-------------CCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCC-CCcceeeeccccCeEE
Q 043350 460 GLLVQWDGN-------------GNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLD-GNLTASWIAHSSPVLK 523 (1133)
Q Consensus 460 G~I~vWd~~-------------g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~H~~~V~~ 523 (1133)
|+|++||+. +.+...+.+|...|.+ +++++.+|++|+.||+|++||+. ++++..+.+|.+.|.+
T Consensus 278 ~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~ 357 (393)
T 1erj_A 278 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 357 (393)
T ss_dssp SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred CEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEE
Confidence 999999983 2456678889999988 99999999999999999999987 5788899999999999
Q ss_pred eeec--------ccceeeecccCCeeeccccCC
Q 043350 524 LAVG--------VDHIYSLAAHGGIRGWTFTSP 548 (1133)
Q Consensus 524 l~fs--------~~~L~S~s~Dg~I~lW~l~s~ 548 (1133)
++|+ +.+|+|+|.||+|++|++...
T Consensus 358 v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 358 VAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 9986 368999999999999998653
No 41
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=3.6e-29 Score=309.35 Aligned_cols=372 Identities=12% Similarity=0.069 Sum_probs=273.6
Q ss_pred ccCCCCC-CCCCcccccCC--CCCEEEEecCCCeEEeccCCCCC-----CCCCCeeeeccCCCccccccceEEEEE-eCC
Q 043350 96 CPGPDAA-DDQQQHKPFQP--MVEFIGSGGGTGIFKVPSRAAVH-----PGRPPCLELRPHPLKETQAGRFLRNIA-CTD 166 (1133)
Q Consensus 96 ~~~~~~~-~~~~~~~~~~p--~g~~lasgs~dg~irlW~~~~~~-----~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~d 166 (1133)
..+|... +.. +.|+| ++++|++|+.||.|++|+..+.. .... ...+..|.. .|.+++ +++
T Consensus 59 ~~~h~~~~v~~---~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~-~~~~~~~~~-------~v~~~~~s~~ 127 (615)
T 1pgu_A 59 FTGHGSSVVTT---VKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNV-KSEFQVLAG-------PISDISWDFE 127 (615)
T ss_dssp ECTTTTSCEEE---EEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEE-EEEEECCSS-------CEEEEEECTT
T ss_pred EecCCCceEEE---EEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccc-cchhhcccc-------cEEEEEEeCC
Confidence 3466655 555 88999 99999999999999999985200 0123 567788888 899999 999
Q ss_pred CCeEE--ecC----CcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCC-EEEEEeCCCeEEEE
Q 043350 167 TQLWA--GQE----CGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNR-LVWTGHKDGKIRSW 239 (1133)
Q Consensus 167 g~lla--s~D----g~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~-~LaSgs~Dg~V~vW 239 (1133)
+++++ +.+ +.|++||...... ....|...|.+++|+|+++ +|++|+.|+.|++|
T Consensus 128 ~~~l~~~~~~~~~~~~v~~~d~~~~~~-------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vw 188 (615)
T 1pgu_A 128 GRRLCVVGEGRDNFGVFISWDSGNSLG-------------------EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFY 188 (615)
T ss_dssp SSEEEEEECCSSCSEEEEETTTCCEEE-------------------ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEE
T ss_pred CCEEEEeccCCCCccEEEEEECCCcce-------------------eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEE
Confidence 99988 545 6899998443322 3446778999999999987 89999999999999
Q ss_pred eCCCCCCCCCCCcccccccccCCC---CeEEEEEeeC-Cc-EEEEeCCCcEEEEeCCCCc----------------eeeE
Q 043350 240 KMDQTLDDANNPFKEGLSWQAHRG---PVLAMIFSSQ-GD-LWSGGEGGVIKIWPWESIE----------------KSLS 298 (1133)
Q Consensus 240 d~~~~~~~~~~~~~~~~~l~gH~~---~V~sl~fsp~-g~-L~Sgs~DgtI~iWdl~~~~----------------~~l~ 298 (1133)
|+.. .+....+.+|.. .|++++|+|+ ++ |++++.||.|++||+.+.. ..+.
T Consensus 189 d~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~ 260 (615)
T 1pgu_A 189 QGPP--------FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALS 260 (615)
T ss_dssp ETTT--------BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEE
T ss_pred eCCC--------cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEE
Confidence 9875 255667889999 9999999999 99 9999999999999987631 2344
Q ss_pred eCCCCceEEEEeecce--EEEccCceeeeccccCC---CCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCC
Q 043350 299 LKPEEKHMAALLVERS--FIDLRAQVTVNGACSIS---STEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEG 373 (1133)
Q Consensus 299 ~~~~~~~l~s~~~d~s--~~d~~~~~~v~~~~~~~---~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~ 373 (1133)
+. ++..+++++.++. +|++.....+..+.... ......+...++...+..+.++.|++||+.+++.+..+.+|.
T Consensus 261 ~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~ 339 (615)
T 1pgu_A 261 WL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHN 339 (615)
T ss_dssp ES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCS
T ss_pred Ec-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCC
Confidence 45 6777888888776 88888766555444321 111222222244444555678888888888877777777766
Q ss_pred cceeEEEeCCC---------------------------------CCccc-c--c--------------------------
Q 043350 374 HIENRVDTQSV---------------------------------QDQPV-E--D-------------------------- 391 (1133)
Q Consensus 374 ~~v~~l~~sp~---------------------------------g~~~~-e--~-------------------------- 391 (1133)
..|++++| |+ +...+ . +
T Consensus 340 ~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~ 418 (615)
T 1pgu_A 340 KGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDG 418 (615)
T ss_dssp SCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSS
T ss_pred CCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCC
Confidence 66666555 43 22200 0 0
Q ss_pred ------------------c-----------c------eEEEEeeCC-CCccccccccc--c--ceeeccCCceEEEEEec
Q 043350 392 ------------------E-----------M------KVKFVSSNK-KEKPHGFLQRS--R--NAIMGAADAVRRVATRG 431 (1133)
Q Consensus 392 ------------------e-----------~------~v~lasgs~-Dg~i~~~~~~~--~--~~~~~~~~~V~~v~~~p 431 (1133)
. . .-.+++++. |+.++.|+... . ..+.+|...|..++++|
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 498 (615)
T 1pgu_A 419 FTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP 498 (615)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECT
T ss_pred CEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECC
Confidence 0 0 001444444 55555332221 1 34567888999999999
Q ss_pred CCc------------------------ccC-CCCCEEEEEECC----------CC-eEEEEecCCeEEEEeC-CC-CeeE
Q 043350 432 AGA------------------------FVD-DTKRTEAMVLTA----------DG-MIWSGCTNGLLVQWDG-NG-NRVS 473 (1133)
Q Consensus 432 ~g~------------------------~~~-h~~~V~sl~~sp----------dg-~L~sgs~DG~I~vWd~-~g-~~l~ 473 (1133)
++. +.+ |...|.+++|+| ++ +|++|+.||.|++|++ .+ +++.
T Consensus 499 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 578 (615)
T 1pgu_A 499 SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK 578 (615)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEE
T ss_pred CCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceech
Confidence 876 444 889999999999 89 9999999999999999 44 7888
Q ss_pred EEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCC
Q 043350 474 DILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 474 ~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g 508 (1133)
.+.+|...|++ |+|+++ |++++.||+|++|+++.
T Consensus 579 ~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 579 ALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp ETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred hhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 89999999998 999999 99999999999999863
No 42
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.8e-29 Score=287.18 Aligned_cols=298 Identities=15% Similarity=0.121 Sum_probs=213.9
Q ss_pred cCCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCC-CCeeee-cc-CCCccccccceEEEEE-eCCCCeEE-
Q 043350 97 PGPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGR-PPCLEL-RP-HPLKETQAGRFLRNIA-CTDTQLWA- 171 (1133)
Q Consensus 97 ~~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~-~~~~~l-~~-H~~~~~~~g~~V~~v~-s~dg~lla- 171 (1133)
.+|..++.+ +.|+|+ +||+|+.||+|++|+... +. .....+ .+ |.. .|++++ +|++++|+
T Consensus 11 ~~h~~~v~~---~~~s~~--~las~~~D~~i~lw~~~~---~~~~~~~~~~~~~h~~-------~v~~v~~sp~~~~las 75 (330)
T 2hes_X 11 KLYKEKIWS---FDFSQG--ILATGSTDRKIKLVSVKY---DDFTLIDVLDETAHKK-------AIRSVAWRPHTSLLAA 75 (330)
T ss_dssp ECCSSCEEE---EEEETT--EEEEEESSSCEEEEECSS---SCCEEEEEECTTCCCS-------CEEEEEECTTSSEEEE
T ss_pred ccCCCceee---eccCCC--EEEEEcCCCEEEEEEecC---CCeEEEEEEecCCccC-------CEEEEEECCCCCEEEE
Confidence 356666555 667776 999999999999999873 22 113344 34 887 999999 99999988
Q ss_pred -ecCCcEEEeeCCCCCCc-CcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCC
Q 043350 172 -GQECGVRFWNLEDSYEP-GAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDAN 249 (1133)
Q Consensus 172 -s~Dg~VrvWdl~~~~~~-~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~ 249 (1133)
+.|++|++|++...... ... .....+.+|..+|.+++|+|++++|++|+.|++|++||+... .
T Consensus 76 ~s~D~~v~iw~~~~~~~~~~~~-----------~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~----~ 140 (330)
T 2hes_X 76 GSFDSTVSIWAKEESADRTFEM-----------DLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDES----G 140 (330)
T ss_dssp EETTSCEEEEEC-------CCC-----------EEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTT----C
T ss_pred EeCCCcEEEEEcccCcCccccc-----------eeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCC----C
Confidence 88999999998642110 000 002245678999999999999999999999999999999531 1
Q ss_pred CCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccc
Q 043350 250 NPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGAC 328 (1133)
Q Consensus 250 ~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~ 328 (1133)
...+.+..+.+|...|++++|+|++. |+||+.|++|++||....
T Consensus 141 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~----------------------------------- 185 (330)
T 2hes_X 141 EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD----------------------------------- 185 (330)
T ss_dssp CCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT-----------------------------------
T ss_pred CCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC-----------------------------------
Confidence 12245667899999999999999999 999999999999986310
Q ss_pred cCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCC--CCccccccceEEEEeeCCCCcc
Q 043350 329 SISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSV--QDQPVEDEMKVKFVSSNKKEKP 406 (1133)
Q Consensus 329 ~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~--g~~~~e~e~~v~lasgs~Dg~i 406 (1133)
..+++..+.+|...|.+++|+|+ +.. +++|+.|++|
T Consensus 186 ---------------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~---------l~s~s~D~~v 223 (330)
T 2hes_X 186 ---------------------------------DWECVAVLNGHEGTVWSSDFDKTEGVFR---------LCSGSDDSTV 223 (330)
T ss_dssp ---------------------------------EEEEEEEECCCSSCEEEEEECCSSSSCE---------EEEEETTSCE
T ss_pred ---------------------------------CeeEEEEccCCCCcEEEEEecCCCCeeE---------EEEEeCCCeE
Confidence 11345667788999999999998 567 9999999999
Q ss_pred ccccccccceeeccCCceEEEEEecCCccc-CCCCCEEEEEECCCCeEEEEecCCeEEEEeCC-C--CeeEE-EecCCc-
Q 043350 407 HGFLQRSRNAIMGAADAVRRVATRGAGAFV-DDTKRTEAMVLTADGMIWSGCTNGLLVQWDGN-G--NRVSD-ILHHQC- 480 (1133)
Q Consensus 407 ~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~-~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~-g--~~l~~-~~~h~~- 480 (1133)
+.|+.+.... ........... +. .|...|.+++|++++.|++++.||+|++|+.. + +.+.. +..|..
T Consensus 224 ~iw~~~~~~~--~~~~~~~~~~~-----~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~ 296 (330)
T 2hes_X 224 RVWKYMGDDE--DDQQEWVCEAI-----LPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVY 296 (330)
T ss_dssp EEEEEEEECT--TSCEEEEEEEE-----CCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTS
T ss_pred EEEEecCCCc--cccceeEEeee-----cccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccc
Confidence 8665432110 00000011111 23 37889999999987799999999999999984 4 23333 356776
Q ss_pred ceeE--Eec--CCCEEEEEecCCeEEEEeCCC
Q 043350 481 AVQC--FCT--YGSRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 481 ~V~~--fs~--dg~~Lasgs~DG~I~vwd~~g 508 (1133)
.|.+ |+| ++++|++|+.||+|+|||++.
T Consensus 297 ~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 297 EINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred eEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 7887 888 789999999999999999863
No 43
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.97 E-value=6.6e-29 Score=282.69 Aligned_cols=287 Identities=14% Similarity=0.217 Sum_probs=216.7
Q ss_pred eeccCCCCeEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCc
Q 043350 207 YESANTSPTMCLMVDCG-NRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGV 284 (1133)
Q Consensus 207 ~~~~h~s~V~~la~spd-~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~Dgt 284 (1133)
.+.+|.++|.+++|+|+ +++|+||+.|++|++|++..... ....++..+.+|...|++++|+|+|. |+||+.|++
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~---~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~ 88 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ---KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKT 88 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT---EEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc---cccccceEEeCCcccEEEEEECCCCCEEEEEeCCCE
Confidence 45689999999999995 48999999999999999864111 01134567899999999999999999 999999999
Q ss_pred EEEEeCCCCcee--eEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCC
Q 043350 285 IKIWPWESIEKS--LSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARS 362 (1133)
Q Consensus 285 I~iWdl~~~~~~--l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~t 362 (1133)
|++||+.+.... +..+..... .+++ .++...++++ +.|++|++||++
T Consensus 89 v~~wd~~~~~~~~~~~~h~~~v~---------~~~~-------------~~~~~~l~s~--------s~D~~i~vwd~~- 137 (319)
T 3frx_A 89 LRLWDVATGETYQRFVGHKSDVM---------SVDI-------------DKKASMIISG--------SRDKTIKVWTIK- 137 (319)
T ss_dssp EEEEETTTTEEEEEEECCSSCEE---------EEEE-------------CTTSCEEEEE--------ETTSCEEEEETT-
T ss_pred EEEEECCCCCeeEEEccCCCcEE---------EEEE-------------cCCCCEEEEE--------eCCCeEEEEECC-
Confidence 999999874322 222322222 1112 2333445555 788999999985
Q ss_pred CceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCE
Q 043350 363 KELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRT 442 (1133)
Q Consensus 363 g~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V 442 (1133)
++++..+.+|...+.++.++|...... + ...+++++.|++|+.|+.+.... . ..+.+|...|
T Consensus 138 ~~~~~~~~~h~~~v~~~~~~~~~~~~~--~-~~~l~s~~~d~~i~~wd~~~~~~-----------~----~~~~~h~~~v 199 (319)
T 3frx_A 138 GQCLATLLGHNDWVSQVRVVPNEKADD--D-SVTIISAGNDKMVKAWNLNQFQI-----------E----ADFIGHNSNI 199 (319)
T ss_dssp SCEEEEECCCSSCEEEEEECCC---------CCEEEEEETTSCEEEEETTTTEE-----------E----EEECCCCSCE
T ss_pred CCeEEEEeccCCcEEEEEEccCCCCCC--C-ccEEEEEeCCCEEEEEECCcchh-----------h----eeecCCCCcE
Confidence 667888999999999999999643100 0 00199999999998766543211 0 1145788899
Q ss_pred EEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCCC-cceee---
Q 043350 443 EAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGN-LTASW--- 514 (1133)
Q Consensus 443 ~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~-~l~~~--- 514 (1133)
.+++++|+| +|++|+.||+|++||+ .++++..+..+ ..|.+ |+|++.+|++++.+ .|++|+++.. .+..+
T Consensus 200 ~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~ 277 (319)
T 3frx_A 200 NTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPE 277 (319)
T ss_dssp EEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCC
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCcc
Confidence 999999999 9999999999999999 55777777654 56776 99999999988755 5999998753 23322
Q ss_pred -----eccccCeEEeeec--ccceeeecccCCeeeccccC
Q 043350 515 -----IAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 515 -----~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s 547 (1133)
..|...|.+++|+ +++|++++.||.|++|++.+
T Consensus 278 ~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 278 FAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp CTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred ccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 3467789999999 89999999999999999865
No 44
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.97 E-value=6.9e-29 Score=282.51 Aligned_cols=279 Identities=11% Similarity=0.135 Sum_probs=218.7
Q ss_pred cCCCCCCCCCcccccCCCC-CEEEEecCCCeEEeccCCCCCC-CCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--
Q 043350 97 PGPDAADDQQQHKPFQPMV-EFIGSGGGTGIFKVPSRAAVHP-GRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA-- 171 (1133)
Q Consensus 97 ~~~~~~~~~~~~~~~~p~g-~~lasgs~dg~irlW~~~~~~~-g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla-- 171 (1133)
.||...+.+ +.|+|++ ++|+||+.|++|++|+...... ...++..+++|.. .|.+++ ++++.+++
T Consensus 14 ~gH~~~V~~---l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~-------~v~~~~~s~dg~~l~s~ 83 (319)
T 3frx_A 14 EGHNGWVTS---LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH-------IVQDCTLTADGAYALSA 83 (319)
T ss_dssp CCCSSCEEE---EEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSS-------CEEEEEECTTSSEEEEE
T ss_pred ccccceEEE---EEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcc-------cEEEEEECCCCCEEEEE
Confidence 377777666 7788865 8999999999999999752110 0122678899998 999999 99999988
Q ss_pred ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCC
Q 043350 172 GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNP 251 (1133)
Q Consensus 172 s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~ 251 (1133)
+.|++|++||+.+... ...+.+|..+|.+++|+|++.+|++|+.|++|++||+..
T Consensus 84 s~D~~v~~wd~~~~~~-----------------~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-------- 138 (319)
T 3frx_A 84 SWDKTLRLWDVATGET-----------------YQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-------- 138 (319)
T ss_dssp ETTSEEEEEETTTTEE-----------------EEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS--------
T ss_pred eCCCEEEEEECCCCCe-----------------eEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--------
Confidence 8899999999976421 123557888999999999999999999999999999987
Q ss_pred cccccccccCCCCeEEEEEeeC------Cc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceee
Q 043350 252 FKEGLSWQAHRGPVLAMIFSSQ------GD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTV 324 (1133)
Q Consensus 252 ~~~~~~l~gH~~~V~sl~fsp~------g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v 324 (1133)
..+..+.+|...|.+++|+|. +. |++|+.|++|++||++
T Consensus 139 -~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~--------------------------------- 184 (319)
T 3frx_A 139 -QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN--------------------------------- 184 (319)
T ss_dssp -CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETT---------------------------------
T ss_pred -CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECC---------------------------------
Confidence 667788999999999999984 33 7888888888888764
Q ss_pred eccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCC
Q 043350 325 NGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKE 404 (1133)
Q Consensus 325 ~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg 404 (1133)
+++....+.+|...|++++|+|++.+ |++|+.|+
T Consensus 185 -------------------------------------~~~~~~~~~~h~~~v~~~~~sp~g~~---------l~s~~~dg 218 (319)
T 3frx_A 185 -------------------------------------QFQIEADFIGHNSNINTLTASPDGTL---------IASAGKDG 218 (319)
T ss_dssp -------------------------------------TTEEEEEECCCCSCEEEEEECTTSSE---------EEEEETTC
T ss_pred -------------------------------------cchhheeecCCCCcEEEEEEcCCCCE---------EEEEeCCC
Confidence 33444566788899999999999999 99999999
Q ss_pred ccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCCC-CeeEEEec-----
Q 043350 405 KPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGNG-NRVSDILH----- 477 (1133)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g-~~l~~~~~----- 477 (1133)
+|+.|+.+.... +..+ .+...|.+++|+|++ .|++++ ++.+++|+++. ..+..+..
T Consensus 219 ~i~iwd~~~~~~-------~~~~---------~~~~~v~~~~~sp~~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~~ 281 (319)
T 3frx_A 219 EIMLWNLAAKKA-------MYTL---------SAQDEVFSLAFSPNRYWLAAAT-ATGIKVFSLDPQYLVDDLRPEFAGY 281 (319)
T ss_dssp EEEEEETTTTEE-------EEEE---------ECCSCEEEEEECSSSSEEEEEE-TTEEEEEEETTEEEEEEECCCCTTC
T ss_pred eEEEEECCCCcE-------EEEe---------cCCCcEEEEEEcCCCCEEEEEc-CCCcEEEEeCcCeeeeccCcccccc
Confidence 998776543222 1111 123568899999999 666665 55699999965 44444432
Q ss_pred ---CCcceeE--EecCCCEEEEEecCCeEEEEeCC
Q 043350 478 ---HQCAVQC--FCTYGSRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 478 ---h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~ 507 (1133)
|...+.+ |+|||++|++|+.||+|+|||+.
T Consensus 282 ~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 282 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp CGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred ccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 3455666 99999999999999999999975
No 45
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.97 E-value=1.3e-28 Score=288.89 Aligned_cols=300 Identities=14% Similarity=0.152 Sum_probs=220.3
Q ss_pred CCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCcc-----------ccccceEEEEE-eC
Q 043350 98 GPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKE-----------TQAGRFLRNIA-CT 165 (1133)
Q Consensus 98 ~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~-----------~~~g~~V~~v~-s~ 165 (1133)
+|...+.. +.|+|+|++||+|+ ++.+++|+... +.. +..+..|.... ......|++++ ++
T Consensus 62 ~h~~~V~~---v~fspdg~~la~g~-~~~v~i~~~~~---g~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 133 (393)
T 1erj_A 62 DHTSVVCC---VKFSNDGEYLATGC-NKTTQVYRVSD---GSL-VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 133 (393)
T ss_dssp ECSSCCCE---EEECTTSSEEEEEC-BSCEEEEETTT---CCE-EEEECC-----------------CCCCBEEEEEECT
T ss_pred CCCCEEEE---EEECCCCCEEEEEc-CCcEEEEEecC---CCE-EEEecCccccccccccccccccCCCceeEEEEEECC
Confidence 46555555 88999999999987 68999999873 444 56665554210 01112589999 99
Q ss_pred CCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q 043350 166 DTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQ 243 (1133)
Q Consensus 166 dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~ 243 (1133)
+|++|+ +.|++|++||+.+... ...+.+|..+|.+++|+|++++|++|+.|++|++||+..
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~-----------------~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~ 196 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKI-----------------VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEE-----------------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCCEEEEEcCCCeEEEEECCCCcE-----------------EEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC
Confidence 999998 8899999999876321 224567888999999999999999999999999999986
Q ss_pred CCCCCCCCcccccccccCCCCeEEEEEee-CCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCc
Q 043350 244 TLDDANNPFKEGLSWQAHRGPVLAMIFSS-QGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQ 321 (1133)
Q Consensus 244 ~~~~~~~~~~~~~~l~gH~~~V~sl~fsp-~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~ 321 (1133)
+ +.... ..|...|.+++|+| +|. |++|+.|++|++||+++......+ .
T Consensus 197 ~--------~~~~~-~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~-------------------~-- 246 (393)
T 1erj_A 197 G--------QCSLT-LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL-------------------D-- 246 (393)
T ss_dssp T--------EEEEE-EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE-------------------C--
T ss_pred C--------eeEEE-EEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEee-------------------c--
Confidence 1 22223 34667899999999 788 999999999999998642110000 0
Q ss_pred eeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeC
Q 043350 322 VTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSN 401 (1133)
Q Consensus 322 ~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs 401 (1133)
.......+|...|.+++|+|++.+ |++|+
T Consensus 247 ------------------------------------------~~~~~~~~h~~~v~~v~~~~~g~~---------l~s~s 275 (393)
T 1erj_A 247 ------------------------------------------SENESGTGHKDSVYSVVFTRDGQS---------VVSGS 275 (393)
T ss_dssp ------------------------------------------------CCCSSCEEEEEECTTSSE---------EEEEE
T ss_pred ------------------------------------------ccccCCCCCCCCEEEEEECCCCCE---------EEEEe
Confidence 000122467788999999999999 99999
Q ss_pred CCCccccccccccceeeccCCc-eEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecC
Q 043350 402 KKEKPHGFLQRSRNAIMGAADA-VRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHH 478 (1133)
Q Consensus 402 ~Dg~i~~~~~~~~~~~~~~~~~-V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h 478 (1133)
.|++|+.|+.+........... ..... ..+.+|...|.++++++++ +|++|+.||.|++||. +++++..+.+|
T Consensus 276 ~d~~v~~wd~~~~~~~~~~~~~~~~~~~----~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h 351 (393)
T 1erj_A 276 LDRSVKLWNLQNANNKSDSKTPNSGTCE----VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH 351 (393)
T ss_dssp TTSEEEEEEC---------------CEE----EEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CCCEEEEEECCCCCCcccccCCCCCcce----EEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC
Confidence 9999986664422111100000 00000 1145788999999999999 9999999999999999 67899999999
Q ss_pred CcceeE--Eec------CCCEEEEEecCCeEEEEeCC
Q 043350 479 QCAVQC--FCT------YGSRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 479 ~~~V~~--fs~------dg~~Lasgs~DG~I~vwd~~ 507 (1133)
...|.+ |++ ++.+|++|+.||+|+||++.
T Consensus 352 ~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 352 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp SSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 999998 554 68899999999999999975
No 46
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.4e-29 Score=291.31 Aligned_cols=318 Identities=11% Similarity=0.096 Sum_probs=240.6
Q ss_pred CCCCCCCCcccccCCCCC-EEEEecCCCeEEeccC----CCCCCCCC-----Ceeeecc----------CCCccccccce
Q 043350 99 PDAADDQQQHKPFQPMVE-FIGSGGGTGIFKVPSR----AAVHPGRP-----PCLELRP----------HPLKETQAGRF 158 (1133)
Q Consensus 99 ~~~~~~~~~~~~~~p~g~-~lasgs~dg~irlW~~----~~~~~g~~-----~~~~l~~----------H~~~~~~~g~~ 158 (1133)
|..++.+ +.|+|+++ +||+|+.||.|++|+. .+ +.. ....+.. |.. .
T Consensus 44 ~~~~v~~---~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 110 (425)
T 1r5m_A 44 KLDNIVS---STWNPLDESILAYGEKNSVARLARIVETDQE---GKKYWKLTIIAELRHPFALSASSGKTTN-------Q 110 (425)
T ss_dssp ECSCCSE---EEECSSCTTEEEEEETBTEEEEEEEEEC---------CEEEEEEEEEECCCCCC------CB-------C
T ss_pred ccCceEE---EEECCCCCcEEEEecCCceEEEEEEecccCC---ccccccccccccccccccccccccCCCC-------c
Confidence 3344444 88999999 9999999999999998 63 331 1333332 444 8
Q ss_pred EEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCe
Q 043350 159 LRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGK 235 (1133)
Q Consensus 159 V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~ 235 (1133)
|++++ ++++++|+ +.|+.|++||..... ......|..+|.+++|+|++++|++++.||.
T Consensus 111 v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 172 (425)
T 1r5m_A 111 VTCLAWSHDGNSIVTGVENGELRLWNKTGAL------------------LNVLNFHRAPIVSVKWNKDGTHIISMDVENV 172 (425)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTSCE------------------EEEECCCCSCEEEEEECTTSSEEEEEETTCC
T ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe------------------eeeccCCCccEEEEEECCCCCEEEEEecCCe
Confidence 99999 99999888 789999999943311 2234568889999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCcccccccccCCCC---------------eEEEEEeeCCcEEEEeCCCcEEEEeCCCCceeeEeC
Q 043350 236 IRSWKMDQTLDDANNPFKEGLSWQAHRGP---------------VLAMIFSSQGDLWSGGEGGVIKIWPWESIEKSLSLK 300 (1133)
Q Consensus 236 V~vWd~~~~~~~~~~~~~~~~~l~gH~~~---------------V~sl~fsp~g~L~Sgs~DgtI~iWdl~~~~~~l~~~ 300 (1133)
|++||+..+ +.+..+..|... |.+++|++++.+++++.||.|++||+........+.
T Consensus 173 i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 244 (425)
T 1r5m_A 173 TILWNVISG--------TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLI 244 (425)
T ss_dssp EEEEETTTT--------EEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEEC
T ss_pred EEEEECCCC--------cEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeec
Confidence 999999751 344556666555 999999998779999999999999998743222222
Q ss_pred CCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEE
Q 043350 301 PEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVD 380 (1133)
Q Consensus 301 ~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~ 380 (1133)
..... +..+...+... .++++ +.|+.|++||+++++.+..+..|...+.+++
T Consensus 245 ~~~~~------------------i~~~~~~~~~~--~l~~~--------~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 296 (425)
T 1r5m_A 245 GHHGP------------------ISVLEFNDTNK--LLLSA--------SDDGTLRIWHGGNGNSQNCFYGHSQSIVSAS 296 (425)
T ss_dssp CCSSC------------------EEEEEEETTTT--EEEEE--------ETTSCEEEECSSSBSCSEEECCCSSCEEEEE
T ss_pred cCCCc------------------eEEEEECCCCC--EEEEE--------cCCCEEEEEECCCCccceEecCCCccEEEEE
Confidence 11111 11111112222 33444 7799999999999999999999999999999
Q ss_pred eCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecC
Q 043350 381 TQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTN 459 (1133)
Q Consensus 381 ~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~D 459 (1133)
|+|++ . +++++.|+.++.|+.+.... +. .+..|...|.+++++|++ +|++++.|
T Consensus 297 ~~~~~-~---------l~~~~~d~~i~i~d~~~~~~-------~~--------~~~~~~~~i~~~~~s~~~~~l~~~~~d 351 (425)
T 1r5m_A 297 WVGDD-K---------VISCSMDGSVRLWSLKQNTL-------LA--------LSIVDGVPIFAGRISQDGQKYAVAFMD 351 (425)
T ss_dssp EETTT-E---------EEEEETTSEEEEEETTTTEE-------EE--------EEECTTCCEEEEEECTTSSEEEEEETT
T ss_pred ECCCC-E---------EEEEeCCCcEEEEECCCCcE-------eE--------ecccCCccEEEEEEcCCCCEEEEEECC
Confidence 99999 8 99999999998665432211 11 123567789999999999 99999999
Q ss_pred CeEEEEeC-CCC--------------------eeEEEecCCc--ceeE--EecCCCEEEEEecCCeEEEEeCCC
Q 043350 460 GLLVQWDG-NGN--------------------RVSDILHHQC--AVQC--FCTYGSRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 460 G~I~vWd~-~g~--------------------~l~~~~~h~~--~V~~--fs~dg~~Lasgs~DG~I~vwd~~g 508 (1133)
|.|++|++ .+. ++..+..|.. .|++ |+|++++|++|+.||.|++||++|
T Consensus 352 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 352 GQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp SCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred CeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence 99999999 445 7888888866 8888 999999999999999999999875
No 47
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=1.5e-28 Score=282.61 Aligned_cols=282 Identities=13% Similarity=0.165 Sum_probs=209.5
Q ss_pred eeccCCCCeEEEEE-----eC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEE
Q 043350 207 YESANTSPTMCLMV-----DC-GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSG 279 (1133)
Q Consensus 207 ~~~~h~s~V~~la~-----sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sg 279 (1133)
.+.+|..+|+|++| ++ ++++|+||+.|++|++||+...... .........+.+|...|++++|+|++. |+||
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~-~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~ 94 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQN-GYFGIPHKALTGHNHFVSDLALSQENCFAISS 94 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCS-SBSEEEEEEECCCSSCEEEEEECSSTTEEEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcc-cccccccchhccCCCceEEEEECCCCCEEEEE
Confidence 45679999999999 76 8999999999999999998752210 001134557889999999999999999 9999
Q ss_pred eCCCcEEEEeCCCCcee--eEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeE
Q 043350 280 GEGGVIKIWPWESIEKS--LSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSL 357 (1133)
Q Consensus 280 s~DgtI~iWdl~~~~~~--l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~l 357 (1133)
+.|++|++||+++.... +..+..... .+.+ .+ +...++++ +.|+.|++
T Consensus 95 s~D~~v~lwd~~~~~~~~~~~~h~~~v~---------~v~~-----------sp--~~~~l~s~--------~~d~~i~~ 144 (343)
T 2xzm_R 95 SWDKTLRLWDLRTGTTYKRFVGHQSEVY---------SVAF-----------SP--DNRQILSA--------GAEREIKL 144 (343)
T ss_dssp ETTSEEEEEETTSSCEEEEEECCCSCEE---------EEEE-----------CS--STTEEEEE--------ETTSCEEE
T ss_pred cCCCcEEEEECCCCcEEEEEcCCCCcEE---------EEEE-----------CC--CCCEEEEE--------cCCCEEEE
Confidence 99999999999874322 222222222 1111 13 33344455 77899999
Q ss_pred eecCCCceeEEEe---cCCcceeEEEeCCCC----------CccccccceEEEEeeCCCCccccccccccceeeccCCce
Q 043350 358 WDARSKELLKVFN---IEGHIENRVDTQSVQ----------DQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAV 424 (1133)
Q Consensus 358 WD~~tg~~l~~~~---~h~~~v~~l~~sp~g----------~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V 424 (1133)
||+.. .....+. .|...+.+++|+|++ .+ +++++.|++|+.|+....
T Consensus 145 wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---------l~s~~~d~~i~iwd~~~~---------- 204 (343)
T 2xzm_R 145 WNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPY---------FASVGWDGRLKVWNTNFQ---------- 204 (343)
T ss_dssp EESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCE---------EEEEETTSEEEEEETTTE----------
T ss_pred EeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCE---------EEEEcCCCEEEEEcCCCc----------
Confidence 99873 3333333 677889999999987 45 999999999986663210
Q ss_pred EEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CC-CeeEEEecCCcceeE--EecCCCEEEEEecCC
Q 043350 425 RRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NG-NRVSDILHHQCAVQC--FCTYGSRMYVGYVSG 499 (1133)
Q Consensus 425 ~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g-~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG 499 (1133)
... .+.+|...|.+++|+|+| +|++|+.||+|++||+ +. .....+ .+...|.+ |+|++.+|++| .|+
T Consensus 205 --~~~----~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~ 276 (343)
T 2xzm_R 205 --IRY----TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQ 276 (343)
T ss_dssp --EEE----EEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESS
T ss_pred --eeE----EEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEE-CCC
Confidence 011 145788889999999999 9999999999999998 44 334444 34456777 99999887755 588
Q ss_pred eEEEEeCCC-Ccce--eee-----------ccccCeEEeeec--ccceeeecccCCeeeccccC
Q 043350 500 YLQILDLDG-NLTA--SWI-----------AHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 500 ~I~vwd~~g-~~l~--~~~-----------~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s 547 (1133)
.|++||+.. +... .+. +|...|.+++|+ +++|++++.||.|++|++.+
T Consensus 277 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 277 GVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp CEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred CEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 899999864 2222 333 788999999999 89999999999999999764
No 48
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=2.4e-28 Score=278.08 Aligned_cols=288 Identities=15% Similarity=0.213 Sum_probs=221.5
Q ss_pred eeeeccCCCccccccceEEEEE-eCC-CCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEE
Q 043350 142 CLELRPHPLKETQAGRFLRNIA-CTD-TQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMC 217 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V~~v~-s~d-g~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~ 217 (1133)
..+|++|.+ .|++|+ +|+ +++|+ |.|++|+|||+....... + .....+.+|..+|.+
T Consensus 31 ~~tL~GH~~-------~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~-~-----------~~~~~l~~h~~~V~~ 91 (340)
T 4aow_A 31 RGTLKGHNG-------WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY-G-----------IPQRALRGHSHFVSD 91 (340)
T ss_dssp EEEECCCSS-------CEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS-E-----------EEEEEECCCSSCEEE
T ss_pred EEEECCccC-------CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc-c-----------eeeEEEeCCCCCEEE
Confidence 457999999 999999 886 67887 889999999987632211 0 002245678999999
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCcee
Q 043350 218 LMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKS 296 (1133)
Q Consensus 218 la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~ 296 (1133)
++|+|++++|++|+.|+.|++|+.... ........+...+..+.+++++. |++|+.|+.+++||+......
T Consensus 92 ~~~s~dg~~l~s~~~d~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~ 163 (340)
T 4aow_A 92 VVISSDGQFALSGSWDGTLRLWDLTTG--------TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY 163 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE
T ss_pred EEECCCCCEEEEEcccccceEEeeccc--------ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceE
Confidence 999999999999999999999998861 34445667888999999999999 999999999999998763222
Q ss_pred eE-eCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcc
Q 043350 297 LS-LKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHI 375 (1133)
Q Consensus 297 l~-~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~ 375 (1133)
.. ....... +......+.+...+++++ +.|+.|++||+++++++..+.+|...
T Consensus 164 ~~~~~~~~~~------------------v~~~~~~~~~~~~~~~s~--------~~d~~i~i~d~~~~~~~~~~~~h~~~ 217 (340)
T 4aow_A 164 TVQDESHSEW------------------VSCVRFSPNSSNPIIVSC--------GWDKLVKVWNLANCKLKTNHIGHTGY 217 (340)
T ss_dssp EECSSSCSSC------------------EEEEEECSCSSSCEEEEE--------ETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred EEEeccccCc------------------ccceEEccCCCCcEEEEE--------cCCCEEEEEECCCCceeeEecCCCCc
Confidence 11 1111111 111111234444455555 78999999999999999999999999
Q ss_pred eeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEE
Q 043350 376 ENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWS 455 (1133)
Q Consensus 376 v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~s 455 (1133)
|++++|+|++.+ |++|+.|++|+.|+.+....+ ..+ .+...|.++.++|++.+++
T Consensus 218 v~~~~~s~~~~~---------l~s~s~Dg~i~iwd~~~~~~~-------~~~---------~~~~~v~~~~~~~~~~~~~ 272 (340)
T 4aow_A 218 LNTVTVSPDGSL---------CASGGKDGQAMLWDLNEGKHL-------YTL---------DGGDIINALCFSPNRYWLC 272 (340)
T ss_dssp EEEEEECTTSSE---------EEEEETTCEEEEEETTTTEEE-------EEE---------ECSSCEEEEEECSSSSEEE
T ss_pred EEEEEECCCCCE---------EEEEeCCCeEEEEEeccCcee-------eee---------cCCceEEeeecCCCCceee
Confidence 999999999999 999999999986664432221 111 2335688999999998888
Q ss_pred EecCCeEEEEeCCC-CeeEEE---------ecCCcceeE--EecCCCEEEEEecCCeEEEEeCC
Q 043350 456 GCTNGLLVQWDGNG-NRVSDI---------LHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 456 gs~DG~I~vWd~~g-~~l~~~---------~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~ 507 (1133)
++.|+.|++||+++ ..+..+ ..|...|++ |+|+|++|++|+.||+|+|||++
T Consensus 273 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 273 AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 88999999999955 444443 357888988 99999999999999999999986
No 49
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=1.3e-28 Score=282.97 Aligned_cols=284 Identities=12% Similarity=0.127 Sum_probs=213.4
Q ss_pred ccCCCCCCCCCccccc-----CC-CCCEEEEecCCCeEEeccCCCCCCC---CCCeeeeccCCCccccccceEEEEE-eC
Q 043350 96 CPGPDAADDQQQHKPF-----QP-MVEFIGSGGGTGIFKVPSRAAVHPG---RPPCLELRPHPLKETQAGRFLRNIA-CT 165 (1133)
Q Consensus 96 ~~~~~~~~~~~~~~~~-----~p-~g~~lasgs~dg~irlW~~~~~~~g---~~~~~~l~~H~~~~~~~g~~V~~v~-s~ 165 (1133)
..||...+.. +.| +| ++++|+||+.|++|++|+....... ..+...+.+|.. .|.+++ ++
T Consensus 17 l~gH~~~V~~---~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~-------~V~~~~~~~ 86 (343)
T 2xzm_R 17 LEGHSDWVTS---IVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNH-------FVSDLALSQ 86 (343)
T ss_dssp EECCSSCEEE---EEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSS-------CEEEEEECS
T ss_pred eccchhhhhh---eeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCC-------ceEEEEECC
Confidence 3467766655 444 55 9999999999999999997632110 112567889998 999999 99
Q ss_pred CCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q 043350 166 DTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQ 243 (1133)
Q Consensus 166 dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~ 243 (1133)
++.+++ +.|++|++||+.+... ...+.+|..+|.+++|+|++++|++|+.|++|++||+..
T Consensus 87 ~~~~l~s~s~D~~v~lwd~~~~~~-----------------~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~ 149 (343)
T 2xzm_R 87 ENCFAISSSWDKTLRLWDLRTGTT-----------------YKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG 149 (343)
T ss_dssp STTEEEEEETTSEEEEEETTSSCE-----------------EEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS
T ss_pred CCCEEEEEcCCCcEEEEECCCCcE-----------------EEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC
Confidence 999888 8899999999976421 123557888999999999999999999999999999975
Q ss_pred CCCCCCCCcccccccccCCCCeEEEEEeeCC----------c-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeec
Q 043350 244 TLDDANNPFKEGLSWQAHRGPVLAMIFSSQG----------D-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVE 312 (1133)
Q Consensus 244 ~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g----------~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d 312 (1133)
... .......+|...|.+++|+|++ . |++++.||+|++||..
T Consensus 150 ~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--------------------- 202 (343)
T 2xzm_R 150 ECK------FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--------------------- 202 (343)
T ss_dssp CEE------EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT---------------------
T ss_pred Cce------eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC---------------------
Confidence 110 1122334899999999999986 4 7777777777777632
Q ss_pred ceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCcccccc
Q 043350 313 RSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDE 392 (1133)
Q Consensus 313 ~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e 392 (1133)
++....+.+|...|++++|+|++.+
T Consensus 203 --------------------------------------------------~~~~~~~~~h~~~v~~~~~s~~g~~----- 227 (343)
T 2xzm_R 203 --------------------------------------------------FQIRYTFKAHESNVNHLSISPNGKY----- 227 (343)
T ss_dssp --------------------------------------------------TEEEEEEECCSSCEEEEEECTTSSE-----
T ss_pred --------------------------------------------------CceeEEEcCccccceEEEECCCCCE-----
Confidence 2334556778889999999999999
Q ss_pred ceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeCC-CCe
Q 043350 393 MKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGN-GNR 471 (1133)
Q Consensus 393 ~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~-g~~ 471 (1133)
|++|+.|++|+.|+.+.... .... + .+...|.+++|+|++.+++++.|+.|++|++. +..
T Consensus 228 ----l~sgs~dg~v~iwd~~~~~~------~~~~--~-------~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~ 288 (343)
T 2xzm_R 228 ----IATGGKDKKLLIWDILNLTY------PQRE--F-------DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSK 288 (343)
T ss_dssp ----EEEEETTCEEEEEESSCCSS------CSEE--E-------ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCS
T ss_pred ----EEEEcCCCeEEEEECCCCcc------ccee--e-------cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCC
Confidence 99999999998666421110 0000 1 12345889999999944556678899999984 333
Q ss_pred eE--EEe-----------cCCcceeE--EecCCCEEEEEecCCeEEEEeCC
Q 043350 472 VS--DIL-----------HHQCAVQC--FCTYGSRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 472 l~--~~~-----------~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~ 507 (1133)
.. .+. +|...|.+ |+|+|++|++|+.||+|++|+++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 289 APVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp CSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEE
T ss_pred CceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEE
Confidence 22 333 57778887 99999999999999999999975
No 50
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.8e-29 Score=302.66 Aligned_cols=326 Identities=10% Similarity=0.023 Sum_probs=208.7
Q ss_pred cCCCCCEEEEecCCCeEEeccCCCCCCCCCC---eeeeccCCCccccccceEEEEE-eCC------CCeEE--ecCCcEE
Q 043350 111 FQPMVEFIGSGGGTGIFKVPSRAAVHPGRPP---CLELRPHPLKETQAGRFLRNIA-CTD------TQLWA--GQECGVR 178 (1133)
Q Consensus 111 ~~p~g~~lasgs~dg~irlW~~~~~~~g~~~---~~~l~~H~~~~~~~g~~V~~v~-s~d------g~lla--s~Dg~Vr 178 (1133)
.+|+++.+++|+.|++|+||+..+ +... ...+..|.. .|+.++ +|+ +.+|| +.|++|+
T Consensus 169 ~~~~~~~laS~s~D~tI~iWd~~~---~~~~~~~~~~l~~~~~-------~V~~v~wsp~~~~~~~~~~LAs~s~Dgtvr 238 (524)
T 2j04_B 169 LNEHLEMFDKEKHSSCIQIFKMNT---STLHCVKVQTIVHSFG-------EVWDLKWHEGCHAPHLVGCLSFVSQEGTIN 238 (524)
T ss_dssp -------------CEEEEEEEEET---TTCCEEEEEEEEECCC-------SEEEEEECSSCCCSSSSCEEEEEETTSCEE
T ss_pred cchhhhhhccCCCCceEEEEEccC---CCCCceEEEEEEecCC-------cEEEEEECCCCCCCCCCceEEEEecCCeEE
Confidence 367778888899999999999763 3321 134566777 899999 775 56888 8899999
Q ss_pred EeeCCCCCCcCc-CCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccc
Q 043350 179 FWNLEDSYEPGA-GIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLS 257 (1133)
Q Consensus 179 vWdl~~~~~~~~-gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~ 257 (1133)
+||+........ ... .......+.+|..+|+|++|+++ ..|++|+.||+|++||+..+. .+...
T Consensus 239 lWd~~~~~~~~~~~~~-------~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~-------~~~~~ 303 (524)
T 2j04_B 239 FLEIIDNATDVHVFKM-------CEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPE-------VPSFY 303 (524)
T ss_dssp EEECCCCSSSSSEEEC-------CCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCS-------SCSEE
T ss_pred EEEcCCCcccccccee-------ecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCC-------CceEE
Confidence 999976421100 000 00112356678899999999986 489999999999999998521 23446
Q ss_pred cccCCCCeEEE--EEeeCC-c-EEEEeCCCcEEEEeCCCCc--eeeEeCCCCceEEEEeecceEEEccCceeeeccccCC
Q 043350 258 WQAHRGPVLAM--IFSSQG-D-LWSGGEGGVIKIWPWESIE--KSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSIS 331 (1133)
Q Consensus 258 l~gH~~~V~sl--~fsp~g-~-L~Sgs~DgtI~iWdl~~~~--~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~ 331 (1133)
+.+|.+.|++| +|+|+| . |+|||.|++|+|||+++.. ..+..+..... +..+...+
T Consensus 304 ~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~------------------v~~v~fsp 365 (524)
T 2j04_B 304 DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSN------------------LVPVVYCP 365 (524)
T ss_dssp EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCS------------------CCCEEEET
T ss_pred eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCc------------------ccceEeCC
Confidence 78999999999 578888 7 9999999999999997631 12211111000 11111112
Q ss_pred CCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccc
Q 043350 332 STEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQ 411 (1133)
Q Consensus 332 ~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~ 411 (1133)
.. ..++++ +.|++|++||++++.++..+.+|...|++++|+|++.+ |++|+.|++|+.|+.
T Consensus 366 ~~--~~l~s~--------~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~---------l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 366 QI--YSYIYS--------DGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPM---------VLAGSADGSLIITNA 426 (524)
T ss_dssp TT--TEEEEE--------CSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCB---------CEEEETTTEEECCBS
T ss_pred Cc--CeEEEe--------CCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCe---------EEEEECCCEEEEEec
Confidence 22 234444 67889999999999999999999999999999999999 999999999986653
Q ss_pred cccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeCCCCeeEEEecCCcceeE--EecCC
Q 043350 412 RSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGNGNRVSDILHHQCAVQC--FCTYG 489 (1133)
Q Consensus 412 ~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~g~~l~~~~~h~~~V~~--fs~dg 489 (1133)
... .+..+... .-..+...++.++|+|++.++....+..+..|+.+|.++.++.+|...|.+ |+|++
T Consensus 427 ~~~-~~~~~~~~----------~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~ 495 (524)
T 2j04_B 427 ARR-LLHGIKNS----------SATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETS 495 (524)
T ss_dssp CSS-TTTCC----------------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCST
T ss_pred hHh-hccccccC----------ccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCC
Confidence 221 11111100 000122346778888888333333333343444468889999999999998 99996
Q ss_pred C---EEEEEecCCeEEEEeCCCC
Q 043350 490 S---RMYVGYVSGYLQILDLDGN 509 (1133)
Q Consensus 490 ~---~Lasgs~DG~I~vwd~~g~ 509 (1133)
. .||+|+.||+|+||++.++
T Consensus 496 ~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 496 AGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp TTTTEEEEECTTSEEEEEECSCC
T ss_pred CccHHHHhhccCceEEEEEcccc
Confidence 4 9999999999999999875
No 51
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.96 E-value=6.8e-28 Score=274.41 Aligned_cols=287 Identities=16% Similarity=0.189 Sum_probs=210.2
Q ss_pred eeccCCCCeEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCc
Q 043350 207 YESANTSPTMCLMVDCG-NRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGV 284 (1133)
Q Consensus 207 ~~~~h~s~V~~la~spd-~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~Dgt 284 (1133)
++.+|.++|+||+|+|+ +++|+|||.||+|+|||+..... ....+...+.+|...|++++|+|+|+ |++|+.|+.
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~---~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~ 109 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET---NYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 109 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS---CSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc---ccceeeEEEeCCCCCEEEEEECCCCCEEEEEccccc
Confidence 45688899999999996 68999999999999999875222 11234567899999999999999999 999999999
Q ss_pred EEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCc
Q 043350 285 IKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKE 364 (1133)
Q Consensus 285 I~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~ 364 (1133)
|++|+................ .......+... .++++ +.|+.+++||+....
T Consensus 110 i~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~--~l~s~--------s~d~~~~~~d~~~~~ 161 (340)
T 4aow_A 110 LRLWDLTTGTTTRRFVGHTKD------------------VLSVAFSSDNR--QIVSG--------SRDKTIKLWNTLGVC 161 (340)
T ss_dssp EEEEETTTTEEEEEEECCSSC------------------EEEEEECTTSS--CEEEE--------ETTSCEEEECTTSCE
T ss_pred ceEEeecccceeeeecCCCCc------------------eeEEEEeecCc--cceee--------cCCCeEEEEEeCCCc
Confidence 999999874332222111111 00001112222 23344 678899999987654
Q ss_pred ee-EEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEE
Q 043350 365 LL-KVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTE 443 (1133)
Q Consensus 365 ~l-~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~ 443 (1133)
.. ..+..|...+..++|++++.. .+ +++++.|++|+.|+.+..... . .+.+|...|.
T Consensus 162 ~~~~~~~~~~~~v~~~~~~~~~~~------~~-~~s~~~d~~i~i~d~~~~~~~-----------~----~~~~h~~~v~ 219 (340)
T 4aow_A 162 KYTVQDESHSEWVSCVRFSPNSSN------PI-IVSCGWDKLVKVWNLANCKLK-----------T----NHIGHTGYLN 219 (340)
T ss_dssp EEEECSSSCSSCEEEEEECSCSSS------CE-EEEEETTSCEEEEETTTTEEE-----------E----EECCCSSCEE
T ss_pred eEEEEeccccCcccceEEccCCCC------cE-EEEEcCCCEEEEEECCCCcee-----------e----EecCCCCcEE
Confidence 43 345678888999999887532 11 789999999986654422110 1 1356788899
Q ss_pred EEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCCC-cce------
Q 043350 444 AMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGN-LTA------ 512 (1133)
Q Consensus 444 sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~-~l~------ 512 (1133)
+++|+|++ +|++|+.||.|++||+ .++++..+..+ ..|.+ |+|++. +++++.|+.|++||+++. .+.
T Consensus 220 ~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 297 (340)
T 4aow_A 220 TVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEV 297 (340)
T ss_dssp EEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccc
Confidence 99999999 9999999999999999 55677777654 45666 888775 556677999999999753 222
Q ss_pred ---eeeccccCeEEeeec--ccceeeecccCCeeeccccCC
Q 043350 513 ---SWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTSP 548 (1133)
Q Consensus 513 ---~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s~ 548 (1133)
...+|...|++++|+ +++|+|++.||.|++|++.++
T Consensus 298 ~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 298 ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp ------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred eeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 345789999999999 889999999999999999874
No 52
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.7e-29 Score=294.53 Aligned_cols=362 Identities=11% Similarity=0.102 Sum_probs=251.7
Q ss_pred cccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeee-ccCCCccccccceEEEEE-eC-CCCeEE--ecCCcEEEee
Q 043350 107 QHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLEL-RPHPLKETQAGRFLRNIA-CT-DTQLWA--GQECGVRFWN 181 (1133)
Q Consensus 107 ~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l-~~H~~~~~~~g~~V~~v~-s~-dg~lla--s~Dg~VrvWd 181 (1133)
.+..|+|+++.+++++ .|+.. ++. +..+ .+|.. .|++++ ++ ++.+|+ +.|++|++||
T Consensus 31 ~~~~f~~~~~~~~~~~------~w~~~----g~~-~~~~~~~h~~-------~V~~~~~s~~~~~~l~s~s~dg~v~vwd 92 (437)
T 3gre_A 31 DYKEFGPIQEIVRSPN------MGNLR----GKL-IATLMENEPN-------SITSSAVSPGETPYLITGSDQGVIKIWN 92 (437)
T ss_dssp GCGGGCCCCCCCCCCC------GGGCC----CCE-EEEECTTTTS-------CEEEEEEECSSSCEEEEEETTSEEEEEE
T ss_pred chhhcCCccccccccc------ccccc----ceE-EeeeccCCCC-------ceEEEEECCCCCCEEEEecCCceEEEeE
Confidence 4577899999998876 49876 766 8888 88988 999999 99 998888 8899999999
Q ss_pred CCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCC---CCCCCCCCCccccc--
Q 043350 182 LEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMD---QTLDDANNPFKEGL-- 256 (1133)
Q Consensus 182 l~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~---~~~~~~~~~~~~~~-- 256 (1133)
+........ . .......|..+|.|++|+|++++|++|+.||+|++||+. .+..........+.
T Consensus 93 ~~~~~~~~~-~-----------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~ 160 (437)
T 3gre_A 93 LKEIIVGEV-Y-----------SSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKI 160 (437)
T ss_dssp HHHHHTTCC-C-----------SCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred CcccccCcc-c-----------ceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEE
Confidence 876111000 0 011222588999999999999999999999999999995 21100000000111
Q ss_pred cccc--CCCCeEEEE--EeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCC--CCceEEEEeecceEEEccCceeeecccc
Q 043350 257 SWQA--HRGPVLAMI--FSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKP--EEKHMAALLVERSFIDLRAQVTVNGACS 329 (1133)
Q Consensus 257 ~l~g--H~~~V~sl~--fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~--~~~~l~s~~~d~s~~d~~~~~~v~~~~~ 329 (1133)
.+.. |...+.++. +++++. |++|+.||+|++||+++......+.. .... +..++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~------------------v~~~~~ 222 (437)
T 3gre_A 161 NLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGA------------------VSSICI 222 (437)
T ss_dssp EGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCC------------------EEEEEE
T ss_pred EccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCc------------------eEEEEE
Confidence 1112 567777877 557788 99999999999999987433222211 1111 111111
Q ss_pred CCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEe-cCCcceeEEEeCC----CCCccccccceEEEEeeCCCC
Q 043350 330 ISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFN-IEGHIENRVDTQS----VQDQPVEDEMKVKFVSSNKKE 404 (1133)
Q Consensus 330 ~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~-~h~~~v~~l~~sp----~g~~~~e~e~~v~lasgs~Dg 404 (1133)
.++...++++ +.|+.|++||+++++++..+. .|...|++++++| ++.+ +++|+.|+
T Consensus 223 --s~~~~~l~s~--------~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~---------l~s~~~dg 283 (437)
T 3gre_A 223 --DEECCVLILG--------TTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVI---------VVGGSSKT 283 (437)
T ss_dssp --CTTSCEEEEE--------ETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEE---------EEEESTTE
T ss_pred --CCCCCEEEEE--------cCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccE---------EEEEcCCC
Confidence 2334455555 789999999999999999987 7777899996654 5667 99999999
Q ss_pred ccccccc---cccceeeccCCceEEEEEecCCc------ccC--CCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCe
Q 043350 405 KPHGFLQ---RSRNAIMGAADAVRRVATRGAGA------FVD--DTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNR 471 (1133)
Q Consensus 405 ~i~~~~~---~~~~~~~~~~~~V~~v~~~p~g~------~~~--h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~ 471 (1133)
+|+.|+. +....+.++...+..+.++|++. +.+ |...|.+++++ ++ +|++|+.||.|++||+ ++++
T Consensus 284 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~ 362 (437)
T 3gre_A 284 FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSS 362 (437)
T ss_dssp EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGG
T ss_pred cEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCccc
Confidence 9996653 34556777777777777777662 444 78889999999 66 9999999999999999 6688
Q ss_pred eEEEecCCcceeE-----EecCCCEEEEEecCCeEEEEe-CCCCcceeeeccccCeEEeeec----ccceeeecccCCee
Q 043350 472 VSDILHHQCAVQC-----FCTYGSRMYVGYVSGYLQILD-LDGNLTASWIAHSSPVLKLAVG----VDHIYSLAAHGGIR 541 (1133)
Q Consensus 472 l~~~~~h~~~V~~-----fs~dg~~Lasgs~DG~I~vwd-~~g~~l~~~~~H~~~V~~l~fs----~~~L~S~s~Dg~I~ 541 (1133)
+..+.+|...... +++...+++.. |+ ..+.....+..|.+.|++++|. +.+|+|++.||.|+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~ 434 (437)
T 3gre_A 363 SKAVISPSRFSDVFIPTQVTANLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIG 434 (437)
T ss_dssp CEEEECC--CCCEEEEEEEETTEEEEEEE--------CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEE
T ss_pred ceEEecccccCceEEEEEeecceEEEEEe--------cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEE
Confidence 8888876543333 44444444443 22 2234455667899999999998 34899999999999
Q ss_pred ecc
Q 043350 542 GWT 544 (1133)
Q Consensus 542 lW~ 544 (1133)
+|+
T Consensus 435 iw~ 437 (437)
T 3gre_A 435 IFQ 437 (437)
T ss_dssp EEC
T ss_pred EeC
Confidence 995
No 53
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.96 E-value=1.8e-27 Score=268.88 Aligned_cols=283 Identities=14% Similarity=0.136 Sum_probs=216.7
Q ss_pred CeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEE
Q 043350 141 PCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMC 217 (1133)
Q Consensus 141 ~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~ 217 (1133)
...++.+|.. .|++++ ++++++++ +.|+.|++|++.+... ......|..+|.+
T Consensus 15 ~~~~~~gh~~-------~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-----------------~~~~~~h~~~v~~ 70 (312)
T 4ery_A 15 LKFTLAGHTK-------AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-----------------EKTISGHKLGISD 70 (312)
T ss_dssp EEEEECCCSS-------CEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------------EEEECCCSSCEEE
T ss_pred eEEEEcccCC-------cEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc-----------------chhhccCCCceEE
Confidence 3677889998 999999 99999888 8899999999865321 1235578889999
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCcee
Q 043350 218 LMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKS 296 (1133)
Q Consensus 218 la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~ 296 (1133)
++|+|++++|++|+.|+.|++||+..+ +.+..+.+|...|.+++|+|+++ |++|+.|++|++||+++....
T Consensus 71 ~~~~~~~~~l~s~~~d~~i~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 142 (312)
T 4ery_A 71 VAWSSDSNLLVSASDDKTLKIWDVSSG--------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 142 (312)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTC--------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEE
T ss_pred EEEcCCCCEEEEECCCCEEEEEECCCC--------cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEE
Confidence 999999999999999999999999861 45667889999999999999999 999999999999999874322
Q ss_pred eEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEe-cCCcc
Q 043350 297 LSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFN-IEGHI 375 (1133)
Q Consensus 297 l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~-~h~~~ 375 (1133)
..+...... +..+...+ +...++++ +.|+.|++||+++++.+..+. .+...
T Consensus 143 ~~~~~~~~~------------------v~~~~~~~--~~~~l~~~--------~~d~~i~~wd~~~~~~~~~~~~~~~~~ 194 (312)
T 4ery_A 143 KTLPAHSDP------------------VSAVHFNR--DGSLIVSS--------SYDGLCRIWDTASGQCLKTLIDDDNPP 194 (312)
T ss_dssp EEECCCSSC------------------EEEEEECT--TSSEEEEE--------ETTSCEEEEETTTCCEEEEECCSSCCC
T ss_pred EEecCCCCc------------------EEEEEEcC--CCCEEEEE--------eCCCcEEEEECCCCceeeEEeccCCCc
Confidence 222211111 11111112 22344444 789999999999999888765 45567
Q ss_pred eeEEEeCCCCCccccccceEEEEeeCCCCccccccccccc---eeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-
Q 043350 376 ENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRN---AIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG- 451 (1133)
Q Consensus 376 v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~---~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg- 451 (1133)
+..++|+|++.+ +++++.|+.|+.|+.+... .+.+|.... ..+......+++
T Consensus 195 ~~~~~~~~~~~~---------l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~ 250 (312)
T 4ery_A 195 VSFVKFSPNGKY---------ILAATLDNTLKLWDYSKGKCLKTYTGHKNEK---------------YCIFANFSVTGGK 250 (312)
T ss_dssp EEEEEECTTSSE---------EEEEETTTEEEEEETTTTEEEEEECSSCCSS---------------SCCCEEEECSSSC
T ss_pred eEEEEECCCCCE---------EEEEcCCCeEEEEECCCCcEEEEEEecCCce---------------EEEEEEEEeCCCc
Confidence 899999999999 9999999999866543221 122221111 112222234556
Q ss_pred eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEe--cCCeEEEEeCC
Q 043350 452 MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGY--VSGYLQILDLD 507 (1133)
Q Consensus 452 ~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs--~DG~I~vwd~~ 507 (1133)
+|++|+.||.|++||+ +++.+..+.+|...|.+ |+|++.+|++++ .|++|++|+.+
T Consensus 251 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 251 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 8999999999999999 66888999999999988 999999999987 69999999864
No 54
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.96 E-value=8.3e-27 Score=278.80 Aligned_cols=336 Identities=13% Similarity=0.148 Sum_probs=236.1
Q ss_pred CeeeeccCCCccccccceE-EEEEeCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEE
Q 043350 141 PCLELRPHPLKETQAGRFL-RNIACTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMC 217 (1133)
Q Consensus 141 ~~~~l~~H~~~~~~~g~~V-~~v~s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~ 217 (1133)
....+++|.. .+ .++.. ++.+++ +.|++|++||+.+... .....+|.++|.|
T Consensus 113 ~~~~l~~h~~-------~v~~~~~~-~~~~l~sgs~dg~i~vwd~~~~~~-----------------~~~~~~h~~~V~~ 167 (464)
T 3v7d_B 113 QRTTLRGHMT-------SVITCLQF-EDNYVITGADDKMIRVYDSINKKF-----------------LLQLSGHDGGVWA 167 (464)
T ss_dssp EEEEEECCSS-------SCEEEEEE-ETTEEEEEETTSCEEEEETTTTEE-----------------EEEECCCSSCEEE
T ss_pred ceEEEcCCCC-------CcEEEEEE-CCCEEEEEcCCCcEEEEECCCCcE-----------------EEEEeCCCcCEEE
Confidence 3568899987 54 44443 445666 8999999999876422 2234578899999
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEee--CCc-EEEEeCCCcEEEEeCCCCc
Q 043350 218 LMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSS--QGD-LWSGGEGGVIKIWPWESIE 294 (1133)
Q Consensus 218 la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp--~g~-L~Sgs~DgtI~iWdl~~~~ 294 (1133)
++|++++ +|++|+.||+|++||+..+ +.+..+.+|.+.|.+++|++ ++. |++|+.||+|++||+.+..
T Consensus 168 l~~~~~~-~l~s~s~dg~i~vwd~~~~--------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~ 238 (464)
T 3v7d_B 168 LKYAHGG-ILVSGSTDRTVRVWDIKKG--------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 238 (464)
T ss_dssp EEECSTT-EEEEEETTSCEEEEETTTT--------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCC
T ss_pred EEEcCCC-EEEEEeCCCCEEEEECCCC--------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCc
Confidence 9999987 9999999999999999861 45668889999999999995 567 9999999999999998732
Q ss_pred eeeEeCC-CCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCC
Q 043350 295 KSLSLKP-EEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEG 373 (1133)
Q Consensus 295 ~~l~~~~-~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~ 373 (1133)
....... ..........+.. ...+..... .......++.++...+..+.|+.|++||+++++++..+.+|.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 310 (464)
T 3v7d_B 239 SVPDHGEEHDYPLVFHTPEEN------PYFVGVLRG--HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT 310 (464)
T ss_dssp CC------CCSSEEESCGGGC------TTEEEEECC--CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred ccccccccCCcceEeeccCCC------eEEEEEccC--ccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence 2111100 0000000000000 000000111 111111223334444444789999999999999999999999
Q ss_pred cceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeE
Q 043350 374 HIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMI 453 (1133)
Q Consensus 374 ~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L 453 (1133)
..+.+++|+|++.. +++|+.|++|+.|+.+....+ ..+.+|...|.++.++ +.+|
T Consensus 311 ~~v~~~~~~~~~~~---------l~sg~~dg~i~vwd~~~~~~~---------------~~~~~h~~~v~~~~~~-~~~l 365 (464)
T 3v7d_B 311 DRIYSTIYDHERKR---------CISASMDTTIRIWDLENGELM---------------YTLQGHTALVGLLRLS-DKFL 365 (464)
T ss_dssp SCEEEEEEETTTTE---------EEEEETTSCEEEEETTTTEEE---------------EEECCCSSCEEEEEEC-SSEE
T ss_pred CCEEEEEEcCCCCE---------EEEEeCCCcEEEEECCCCcEE---------------EEEeCCCCcEEEEEEc-CCEE
Confidence 99999999999999 999999999986654322110 0134677778888886 2489
Q ss_pred EEEecCCeEEEEeCC-CCeeEEEec-CCcceeEEecCCCEEEEEecCCeEEEEeCC-CCccee-eeccccCeEEeeeccc
Q 043350 454 WSGCTNGLLVQWDGN-GNRVSDILH-HQCAVQCFCTYGSRMYVGYVSGYLQILDLD-GNLTAS-WIAHSSPVLKLAVGVD 529 (1133)
Q Consensus 454 ~sgs~DG~I~vWd~~-g~~l~~~~~-h~~~V~~fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~-~~~H~~~V~~l~fs~~ 529 (1133)
++|+.||+|++||+. +.....+.. +...+.+|++++++|++|+ ||.|++||+. ++++.. +.+|.+.|++++|+++
T Consensus 366 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~ 444 (464)
T 3v7d_B 366 VSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK 444 (464)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEETT
T ss_pred EEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEecCC
Confidence 999999999999994 455444432 3444556999999999998 9999999987 566654 6789999999999955
Q ss_pred ceeee-cccCCeeecc
Q 043350 530 HIYSL-AAHGGIRGWT 544 (1133)
Q Consensus 530 ~L~S~-s~Dg~I~lW~ 544 (1133)
.++++ +.||.+.+|-
T Consensus 445 ~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 445 TLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEEEEEEETTEEEEEE
T ss_pred EEEEEEEeCCeEEEEE
Confidence 55554 5566555554
No 55
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.96 E-value=7e-28 Score=277.94 Aligned_cols=293 Identities=12% Similarity=0.112 Sum_probs=220.5
Q ss_pred eeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcE
Q 043350 207 YESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVI 285 (1133)
Q Consensus 207 ~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI 285 (1133)
+...|..+|.|++|+|++++|++|+.|+.|++|++..+. +.....+.+|...|++++|+|+++ |++++.||.|
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i 76 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK------WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNA 76 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE------EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc------EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeE
Confidence 345688899999999999999999999999999998611 126778889999999999999999 9999999999
Q ss_pred EEEeCCCCc--eeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCC
Q 043350 286 KIWPWESIE--KSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSK 363 (1133)
Q Consensus 286 ~iWdl~~~~--~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg 363 (1133)
++||+.+.. ..+........ +..+...+. ...++++ +.|+.|++||+..+
T Consensus 77 ~vwd~~~~~~~~~~~~~~~~~~------------------v~~~~~~~~--~~~l~~~--------~~d~~v~i~d~~~~ 128 (372)
T 1k8k_C 77 YVWTLKGRTWKPTLVILRINRA------------------ARCVRWAPN--EKKFAVG--------SGSRVISICYFEQE 128 (372)
T ss_dssp EEEEEETTEEEEEEECCCCSSC------------------EEEEEECTT--SSEEEEE--------ETTSSEEEEEEETT
T ss_pred EEEECCCCeeeeeEEeecCCCc------------------eeEEEECCC--CCEEEEE--------eCCCEEEEEEecCC
Confidence 999997642 11111111111 111111122 2334444 67899999999887
Q ss_pred ce---eEEE-ecCCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccccccccee-------eccCCceEEEEEecC
Q 043350 364 EL---LKVF-NIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAI-------MGAADAVRRVATRGA 432 (1133)
Q Consensus 364 ~~---l~~~-~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~-------~~~~~~V~~v~~~p~ 432 (1133)
.. ...+ ..|...+.+++|+|++.+ +++++.|+.++.|+.+....- .+..........
T Consensus 129 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~---------l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--- 196 (372)
T 1k8k_C 129 NDWWVCKHIKKPIRSTVLSLDWHPNSVL---------LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMF--- 196 (372)
T ss_dssp TTEEEEEEECTTCCSCEEEEEECTTSSE---------EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE---
T ss_pred CcceeeeeeecccCCCeeEEEEcCCCCE---------EEEEcCCCCEEEEEcccccccccccccccccccchhhheE---
Confidence 63 3333 567888999999999999 999999999986553211000 000000000011
Q ss_pred CcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCC
Q 043350 433 GAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 433 g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g 508 (1133)
.+..|...|.+++|+|++ +|++++.||.|++||+ +++++..+..|...|.+ |+|++.+|++| .||.|++|++..
T Consensus 197 -~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 197 -ESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp -ECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred -ecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 145788899999999999 9999999999999999 77999999999999988 99999999888 899999999865
Q ss_pred --Cc---c------------------------------------eee-eccccCeEEeeec---c---cceeeecccCCe
Q 043350 509 --NL---T------------------------------------ASW-IAHSSPVLKLAVG---V---DHIYSLAAHGGI 540 (1133)
Q Consensus 509 --~~---l------------------------------------~~~-~~H~~~V~~l~fs---~---~~L~S~s~Dg~I 540 (1133)
.. + ..+ .+|.++|++++|. + .+|+|++.||.|
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i 354 (372)
T 1k8k_C 275 AAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGM 354 (372)
T ss_dssp TTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEE
T ss_pred cCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCce
Confidence 11 0 223 4899999999966 4 899999999999
Q ss_pred eeccccC
Q 043350 541 RGWTFTS 547 (1133)
Q Consensus 541 ~lW~l~s 547 (1133)
++|++..
T Consensus 355 ~~W~~~~ 361 (372)
T 1k8k_C 355 SIWDVRS 361 (372)
T ss_dssp EEEEHHH
T ss_pred EEEEecC
Confidence 9999765
No 56
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.9e-29 Score=300.74 Aligned_cols=319 Identities=11% Similarity=-0.002 Sum_probs=211.4
Q ss_pred eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCC------CCEEEEEeCCCe
Q 043350 164 CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCG------NRLVWTGHKDGK 235 (1133)
Q Consensus 164 s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd------~~~LaSgs~Dg~ 235 (1133)
++++++++ +.|++|+||++.+...... .......|.+.|.+++|+|+ +.+||+|+.||+
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~-------------~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgt 236 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCV-------------KVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGT 236 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEE-------------EEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSC
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCce-------------EEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCe
Confidence 34566777 7899999999865321100 01234467889999999996 579999999999
Q ss_pred EEEEeCCCCCCCCC---CCcccccccccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCCCCc---eeeEeCCCCceEEEE
Q 043350 236 IRSWKMDQTLDDAN---NPFKEGLSWQAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWESIE---KSLSLKPEEKHMAAL 309 (1133)
Q Consensus 236 V~vWd~~~~~~~~~---~~~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~~~~---~~l~~~~~~~~l~s~ 309 (1133)
|+|||+..+..... ........+.+|...|++++|++++.|++|+.||+|++||+++.. ..+..|.....
T Consensus 237 vrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~---- 312 (524)
T 2j04_B 237 INFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYIL---- 312 (524)
T ss_dssp EEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEE----
T ss_pred EEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEE----
Confidence 99999976322000 011233467899999999999986559999999999999998531 12223332222
Q ss_pred eecceEEEccCceeeeccccCCCCCe-EEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCc--ceeEEEeCCCCC
Q 043350 310 LVERSFIDLRAQVTVNGACSISSTEI-KCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGH--IENRVDTQSVQD 386 (1133)
Q Consensus 310 ~~d~s~~d~~~~~~v~~~~~~~~~~~-~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~--~v~~l~~sp~g~ 386 (1133)
.++....++. .+++++ +.|++|+|||+++++++..+.+|.. .|.+++|+|++.
T Consensus 313 ----------------sv~~~~s~~g~~~laS~--------S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~ 368 (524)
T 2j04_B 313 ----------------SVSTAYSDFEDTVVSTV--------AVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIY 368 (524)
T ss_dssp ----------------EEEEECCTTSCCEEEEE--------ETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTT
T ss_pred ----------------EEEEEcCCCCCeEEEEe--------ccCCeEEEEECCCCCcccccccccccCcccceEeCCCcC
Confidence 1110022333 556666 8899999999999998888877654 478999999999
Q ss_pred ccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEE
Q 043350 387 QPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQW 465 (1133)
Q Consensus 387 ~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vW 465 (1133)
. +++++.|++|+.|+.+.... +. .+.+|...|++++|+|+| .|++|+.||+|++|
T Consensus 369 ~---------l~s~~~d~tv~lwd~~~~~~-------~~--------~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lw 424 (524)
T 2j04_B 369 S---------YIYSDGASSLRAVPSRAAFA-------VH--------PLVSRETTITAIGVSRLHPMVLAGSADGSLIIT 424 (524)
T ss_dssp E---------EEEECSSSEEEEEETTCTTC-------CE--------EEEECSSCEEEEECCSSCCBCEEEETTTEEECC
T ss_pred e---------EEEeCCCCcEEEEECccccc-------ce--------eeecCCCceEEEEeCCCCCeEEEEECCCEEEEE
Confidence 8 99999999998666443211 01 134677888999999999 99999999999999
Q ss_pred eCCCCeeEEEec-----CCcceeE--EecCCCEEEEEecCCeEEEEeCCCCcceeeeccccCeEEeeec--c---cceee
Q 043350 466 DGNGNRVSDILH-----HQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGNLTASWIAHSSPVLKLAVG--V---DHIYS 533 (1133)
Q Consensus 466 d~~g~~l~~~~~-----h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~~l~~~~~H~~~V~~l~fs--~---~~L~S 533 (1133)
+..+..+..... +...|++ |+|+|+.+. ...+..+..|+.++..+..+.+|...|.+|+|+ + ..|++
T Consensus 425 d~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAs 503 (524)
T 2j04_B 425 NAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAF 503 (524)
T ss_dssp BSCSSTTTCC------CCCCEEEECBCCSSSCEEE-ECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEE
T ss_pred echHhhccccccCccceeeeEEEEeccCCCCCeEE-ccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHh
Confidence 996654433221 1224656 899998553 333333444455577888999999999999999 2 37999
Q ss_pred ecccCCeeeccccCC
Q 043350 534 LAAHGGIRGWTFTSP 548 (1133)
Q Consensus 534 ~s~Dg~I~lW~l~s~ 548 (1133)
++.||.||||++...
T Consensus 504 g~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 504 SNSAGLLTLEYLSLE 518 (524)
T ss_dssp ECTTSEEEEEECSCC
T ss_pred hccCceEEEEEcccc
Confidence 999999999998653
No 57
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.9e-27 Score=267.98 Aligned_cols=290 Identities=15% Similarity=0.140 Sum_probs=231.6
Q ss_pred eeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEE
Q 043350 142 CLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCL 218 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~l 218 (1133)
...+.+|.. .|++++ ++++++|+ +.|+.|++||+.+... ......|..+|.++
T Consensus 25 ~~~l~~h~~-------~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-----------------~~~~~~h~~~v~~~ 80 (369)
T 3zwl_B 25 AIKLTGHER-------PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER-----------------LGTLDGHTGTIWSI 80 (369)
T ss_dssp EEEEECCSS-------CEEEEEECTTSCEEEEEESSSCEEEEETTTCCE-----------------EEEECCCSSCEEEE
T ss_pred cEEEEEeec-------eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh-----------------hhhhhhcCCcEEEE
Confidence 456889998 999999 99999888 7899999999876322 22455688899999
Q ss_pred EEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCC-----CcEEEEeCCC
Q 043350 219 MVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEG-----GVIKIWPWES 292 (1133)
Q Consensus 219 a~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~D-----gtI~iWdl~~ 292 (1133)
+|+|++++|++++.||+|++||+..+ +.+..+. |...|.+++|+|++. |++++.+ +.|++||+..
T Consensus 81 ~~~~~~~~l~s~~~dg~i~iwd~~~~--------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~ 151 (369)
T 3zwl_B 81 DVDCFTKYCVTGSADYSIKLWDVSNG--------QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIER 151 (369)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTC--------CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEE
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCC--------cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecC
Confidence 99999999999999999999999861 2333444 889999999999999 9999999 9999999853
Q ss_pred CceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecC
Q 043350 293 IEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIE 372 (1133)
Q Consensus 293 ~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h 372 (1133)
.... ..+.......+..+..+
T Consensus 152 ~~~~-----------------------------------------------------------~~~~~~~~~~~~~~~~~ 172 (369)
T 3zwl_B 152 DSAT-----------------------------------------------------------HELTKVSEEPIHKIITH 172 (369)
T ss_dssp CTTT-----------------------------------------------------------CCEEEECSSCSEEEECC
T ss_pred Cccc-----------------------------------------------------------eeecccccceeeeccCC
Confidence 1000 00000122333444555
Q ss_pred Cc--ceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCC
Q 043350 373 GH--IENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTAD 450 (1133)
Q Consensus 373 ~~--~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spd 450 (1133)
.. .+.+++|+|++.+ +++++.|+.|+.|+.+.... .+. .+..|...|.+++|+|+
T Consensus 173 ~~~~~~~~~~~~~~~~~---------l~~~~~dg~i~i~d~~~~~~------~~~--------~~~~~~~~v~~~~~~~~ 229 (369)
T 3zwl_B 173 EGLDAATVAGWSTKGKY---------IIAGHKDGKISKYDVSNNYE------YVD--------SIDLHEKSISDMQFSPD 229 (369)
T ss_dssp TTCCCEEEEEECGGGCE---------EEEEETTSEEEEEETTTTTE------EEE--------EEECCSSCEEEEEECTT
T ss_pred cCccceeEEEEcCCCCE---------EEEEcCCCEEEEEECCCCcE------eEE--------EEecCCCceeEEEECCC
Confidence 55 7899999999999 99999999998665442110 011 13457788999999999
Q ss_pred C-eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCC--------------eEEEEeCC-CCcc
Q 043350 451 G-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSG--------------YLQILDLD-GNLT 511 (1133)
Q Consensus 451 g-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG--------------~I~vwd~~-g~~l 511 (1133)
+ +|++++.||.|++||+ .++.+..+. +...+.+ |+|++++|++++.++ .|++||+. ++++
T Consensus 230 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 308 (369)
T 3zwl_B 230 LTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI 308 (369)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEE
T ss_pred CCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcch
Confidence 9 9999999999999999 567777776 5666766 999999999999988 89999997 5778
Q ss_pred eeeeccccCeEEeeec--ccceeeecccCCeeeccccC
Q 043350 512 ASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 512 ~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s 547 (1133)
..+.+|...|++++|+ +++|++++.||.|++|++..
T Consensus 309 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 309 GRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred hheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 8899999999999998 88999999999999999875
No 58
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=2.2e-28 Score=283.71 Aligned_cols=292 Identities=10% Similarity=0.071 Sum_probs=208.7
Q ss_pred ceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCC
Q 043350 205 PFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGG 283 (1133)
Q Consensus 205 ~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~Dg 283 (1133)
+.+...+.++|+|++|+|++++|++|+.|+.|++|++..+. .+....+.+|.+.|++++|+|+++ |++|+.|+
T Consensus 4 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~ 77 (377)
T 3dwl_C 4 SQVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG------WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDR 77 (377)
T ss_dssp EEEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE------EEECCCBCCCSSCEEEEEECTTTCCEEEEETTS
T ss_pred ceeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc------eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCC
Confidence 44555677899999999999999999999999999998621 145667889999999999999999 99999999
Q ss_pred cEEEEeCCCCc---eeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeec
Q 043350 284 VIKIWPWESIE---KSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDA 360 (1133)
Q Consensus 284 tI~iWdl~~~~---~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~ 360 (1133)
+|++||+.+.. ....+..... .+..+...+ +...++++ +.|+.|++||+
T Consensus 78 ~v~vwd~~~~~~~~~~~~~~~~~~------------------~v~~~~~~~--~~~~l~~~--------~~d~~i~iwd~ 129 (377)
T 3dwl_C 78 NAYVYEKRPDGTWKQTLVLLRLNR------------------AATFVRWSP--NEDKFAVG--------SGARVISVCYF 129 (377)
T ss_dssp SEEEC------CCCCEEECCCCSS------------------CEEEEECCT--TSSCCEEE--------ESSSCEEECCC
T ss_pred eEEEEEcCCCCceeeeeEecccCC------------------ceEEEEECC--CCCEEEEE--------ecCCeEEEEEE
Confidence 99999998643 1111111111 111222223 22233444 67899999999
Q ss_pred CCCc---eeEEEec-CCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccce-------eeccCCceEEEEE
Q 043350 361 RSKE---LLKVFNI-EGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNA-------IMGAADAVRRVAT 429 (1133)
Q Consensus 361 ~tg~---~l~~~~~-h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~-------~~~~~~~V~~v~~ 429 (1133)
.+++ ++..+.. |...|++++|+|++.+ |++++.|++++.|+...... ..+..........
T Consensus 130 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~---------l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (377)
T 3dwl_C 130 EQENDWWVSKHLKRPLRSTILSLDWHPNNVL---------LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCA 200 (377)
T ss_dssp -----CCCCEEECSSCCSCEEEEEECTTSSE---------EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEE
T ss_pred CCcccceeeeEeecccCCCeEEEEEcCCCCE---------EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhh
Confidence 9887 4778887 8999999999999999 99999999998655431110 0011111122222
Q ss_pred ecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCe----eEEEecCCcceeE--EecCCCEEEEEecCCeE
Q 043350 430 RGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNR----VSDILHHQCAVQC--FCTYGSRMYVGYVSGYL 501 (1133)
Q Consensus 430 ~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~----l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I 501 (1133)
. + +|...|.+++|+|++ +|++|+.||.|++||+ .+++ +..+..|...|.+ |+|+|++|++|+.++.+
T Consensus 201 ~----~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 275 (377)
T 3dwl_C 201 E----Y-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI 275 (377)
T ss_dssp C----C-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE
T ss_pred c----c-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE
Confidence 2 4 788999999999999 9999999999999999 5555 7888999999998 99999999999877766
Q ss_pred EEEeCC-CC--cc----------------------------------eee----------------eccccCeEEeeec-
Q 043350 502 QILDLD-GN--LT----------------------------------ASW----------------IAHSSPVLKLAVG- 527 (1133)
Q Consensus 502 ~vwd~~-g~--~l----------------------------------~~~----------------~~H~~~V~~l~fs- 527 (1133)
+|+.. +. .. ..+ .+|.+.|+++++.
T Consensus 276 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~ 354 (377)
T 3dwl_C 276 -LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYA 354 (377)
T ss_dssp -EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEE
T ss_pred -EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccC
Confidence 66653 11 00 111 1399999999976
Q ss_pred c--c---ceeeecccCCeeeccc
Q 043350 528 V--D---HIYSLAAHGGIRGWTF 545 (1133)
Q Consensus 528 ~--~---~L~S~s~Dg~I~lW~l 545 (1133)
+ . .|+|+|.||.|++|++
T Consensus 355 ~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 355 GTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EETTEEEEEEEEETTSEEEEECC
T ss_pred CCCCceEEEEeecCCCcEEEecC
Confidence 2 2 5999999999999985
No 59
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.96 E-value=1.3e-26 Score=275.87 Aligned_cols=313 Identities=14% Similarity=0.170 Sum_probs=240.2
Q ss_pred eeeeccCCCccccccceE-EEEEeCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEE
Q 043350 142 CLELRPHPLKETQAGRFL-RNIACTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCL 218 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V-~~v~s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~l 218 (1133)
...+.+|.. .+ .++ +.++.+++ +.|++|++||+.+... .....+|..+|.++
T Consensus 111 ~~~l~~h~~-------~v~~~~-~~~g~~l~sg~~dg~i~vwd~~~~~~-----------------~~~~~~h~~~v~~~ 165 (445)
T 2ovr_B 111 PKVLKGHDD-------HVITCL-QFCGNRIVSGSDDNTLKVWSAVTGKC-----------------LRTLVGHTGGVWSS 165 (445)
T ss_dssp CEEEECSTT-------SCEEEE-EEETTEEEEEETTSCEEEEETTTCCE-----------------EEECCCCSSCEEEE
T ss_pred eEEecccCC-------CcEEEE-EEcCCEEEEEECCCcEEEEECCCCcE-----------------EEEEcCCCCCEEEE
Confidence 567889987 54 444 44566776 8899999999876322 12345688899999
Q ss_pred EEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceee
Q 043350 219 MVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSL 297 (1133)
Q Consensus 219 a~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l 297 (1133)
+|+ +++|++|+.||+|++||+..+ +.+..+.+|...|.+++|+ ++ |++|+.||+|++||+.+.....
T Consensus 166 ~~~--~~~l~s~~~dg~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~ 233 (445)
T 2ovr_B 166 QMR--DNIIISGSTDRTLKVWNAETG--------ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLH 233 (445)
T ss_dssp EEE--TTEEEEEETTSCEEEEETTTT--------EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEE
T ss_pred Eec--CCEEEEEeCCCeEEEEECCcC--------cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEE
Confidence 997 679999999999999999861 5567788999999999995 45 9999999999999998642222
Q ss_pred EeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCccee
Q 043350 298 SLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIEN 377 (1133)
Q Consensus 298 ~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~ 377 (1133)
.+...... +..+ . ..+ ..++++ +.|+.|++||+++++++..+.+|...+.
T Consensus 234 ~~~~~~~~---------v~~~---------~--~~~--~~l~~~--------~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 283 (445)
T 2ovr_B 234 VLMGHVAA---------VRCV---------Q--YDG--RRVVSG--------AYDFMVKVWDPETETCLHTLQGHTNRVY 283 (445)
T ss_dssp EEECCSSC---------EEEE---------E--ECS--SCEEEE--------ETTSCEEEEEGGGTEEEEEECCCSSCEE
T ss_pred EEcCCccc---------EEEE---------E--ECC--CEEEEE--------cCCCEEEEEECCCCcEeEEecCCCCceE
Confidence 21111111 0001 0 011 123333 7799999999999999999999999999
Q ss_pred EEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEe
Q 043350 378 RVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGC 457 (1133)
Q Consensus 378 ~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs 457 (1133)
++.+ ++.. +++|+.|++|+.|+.+....+ . .+.+|...+.++.+++ ..|++|+
T Consensus 284 ~~~~--~~~~---------l~~~~~d~~i~i~d~~~~~~~-------~--------~~~~~~~~v~~~~~~~-~~l~~~~ 336 (445)
T 2ovr_B 284 SLQF--DGIH---------VVSGSLDTSIRVWDVETGNCI-------H--------TLTGHQSLTSGMELKD-NILVSGN 336 (445)
T ss_dssp EEEE--CSSE---------EEEEETTSCEEEEETTTCCEE-------E--------EECCCCSCEEEEEEET-TEEEEEE
T ss_pred EEEE--CCCE---------EEEEeCCCeEEEEECCCCCEE-------E--------EEcCCcccEEEEEEeC-CEEEEEe
Confidence 9999 6777 999999999986654422111 0 1235566676666632 2899999
Q ss_pred cCCeEEEEeC-CCCeeEEEec---CCcceeEEecCCCEEEEEecCCeEEEEeCC-CCcceee-----eccccCeEEeeec
Q 043350 458 TNGLLVQWDG-NGNRVSDILH---HQCAVQCFCTYGSRMYVGYVSGYLQILDLD-GNLTASW-----IAHSSPVLKLAVG 527 (1133)
Q Consensus 458 ~DG~I~vWd~-~g~~l~~~~~---h~~~V~~fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~-----~~H~~~V~~l~fs 527 (1133)
.||.|++||+ +++++..+.. |...|.++..++++|++|+.||.|++||+. ++.+..+ .+|.+.|++++|+
T Consensus 337 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s 416 (445)
T 2ovr_B 337 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS 416 (445)
T ss_dssp TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEEC
T ss_pred CCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEec
Confidence 9999999999 7788888886 889999988889999999999999999987 5666666 4788999999999
Q ss_pred --ccceeeecccCC----eeeccccCC
Q 043350 528 --VDHIYSLAAHGG----IRGWTFTSP 548 (1133)
Q Consensus 528 --~~~L~S~s~Dg~----I~lW~l~s~ 548 (1133)
+.+|++++.||+ |.+||+...
T Consensus 417 ~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 417 NTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp SSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CCEEEEEEcccCCCCccEEEEEECCCC
Confidence 778899999998 999998753
No 60
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.96 E-value=1.7e-26 Score=261.94 Aligned_cols=277 Identities=13% Similarity=0.164 Sum_probs=218.9
Q ss_pred CCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeec--cCCCccccccceEEEEE-eCCCCeEE--e
Q 043350 98 GPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELR--PHPLKETQAGRFLRNIA-CTDTQLWA--G 172 (1133)
Q Consensus 98 ~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~--~H~~~~~~~g~~V~~v~-s~dg~lla--s 172 (1133)
+|..++.. +.|+|++++|++++ ||.+++|+......... ...+. +|.. .|.+++ ++++++++ +
T Consensus 49 ~h~~~v~~---~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~-~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~ 116 (337)
T 1gxr_A 49 NHGEVVCA---VTISNPTRHVYTGG-KGCVKVWDISHPGNKSP-VSQLDCLNRDN-------YIRSCKLLPDGCTLIVGG 116 (337)
T ss_dssp CCSSCCCE---EEECSSSSEEEEEC-BSEEEEEETTSTTCCSC-SEEEECSCTTS-------BEEEEEECTTSSEEEEEE
T ss_pred cCCCceEE---EEEecCCcEEEEcC-CCeEEEEECCCCCceee-eecccccCCCC-------cEEEEEEcCCCCEEEEEc
Confidence 66666666 88999999999999 99999999874221222 33444 6776 899999 99998888 7
Q ss_pred cCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCc
Q 043350 173 QECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPF 252 (1133)
Q Consensus 173 ~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~ 252 (1133)
.|+.|++||+.+..... ......|..+|.+++|+|++++|++|+.||.|++||+.. .
T Consensus 117 ~d~~i~~~d~~~~~~~~---------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~--------~ 173 (337)
T 1gxr_A 117 EASTLSIWDLAAPTPRI---------------KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN--------Q 173 (337)
T ss_dssp SSSEEEEEECCCC--EE---------------EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------T
T ss_pred CCCcEEEEECCCCCcce---------------eeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC--------C
Confidence 89999999998642111 223456788999999999999999999999999999986 1
Q ss_pred ccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCC
Q 043350 253 KEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSIS 331 (1133)
Q Consensus 253 ~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~ 331 (1133)
+....+.+|...|.+++|+|+++ |++++.||.|++||+++.
T Consensus 174 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-------------------------------------- 215 (337)
T 1gxr_A 174 TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG-------------------------------------- 215 (337)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--------------------------------------
T ss_pred ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC--------------------------------------
Confidence 45667888999999999999999 999999999999998532
Q ss_pred CCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccc
Q 043350 332 STEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQ 411 (1133)
Q Consensus 332 ~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~ 411 (1133)
+.+..+ .+...+.+++|+|++.+ +++++.++.++.|+.
T Consensus 216 --------------------------------~~~~~~-~~~~~v~~~~~s~~~~~---------l~~~~~~~~i~~~~~ 253 (337)
T 1gxr_A 216 --------------------------------RQLQQH-DFTSQIFSLGYCPTGEW---------LAVGMESSNVEVLHV 253 (337)
T ss_dssp --------------------------------EEEEEE-ECSSCEEEEEECTTSSE---------EEEEETTSCEEEEET
T ss_pred --------------------------------ceEeee-cCCCceEEEEECCCCCE---------EEEEcCCCcEEEEEC
Confidence 111222 13456788999999999 999999999975544
Q ss_pred cccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--Eec
Q 043350 412 RSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCT 487 (1133)
Q Consensus 412 ~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~ 487 (1133)
+... . .. +..|...|.+++|+|++ +|++++.||.|++|++ .++.+ ....|...|.+ |+|
T Consensus 254 ~~~~--------~--~~------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~-~~~~~~~~v~~~~~s~ 316 (337)
T 1gxr_A 254 NKPD--------K--YQ------LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI-FQSKESSSVLSCDISV 316 (337)
T ss_dssp TSSC--------E--EE------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-EEEECSSCEEEEEECT
T ss_pred CCCC--------e--EE------EcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE-EEecCCCcEEEEEECC
Confidence 3211 1 11 34677889999999999 9999999999999999 44555 34457788887 999
Q ss_pred CCCEEEEEecCCeEEEEeC
Q 043350 488 YGSRMYVGYVSGYLQILDL 506 (1133)
Q Consensus 488 dg~~Lasgs~DG~I~vwd~ 506 (1133)
++++|++|+.||.|++|++
T Consensus 317 ~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 317 DDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TSCEEEEEETTSCEEEEEE
T ss_pred CCCEEEEecCCCeEEEEEE
Confidence 9999999999999999996
No 61
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=5.8e-28 Score=287.21 Aligned_cols=287 Identities=11% Similarity=0.102 Sum_probs=208.1
Q ss_pred eccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEee-CCc-EEEEeCCCc
Q 043350 208 ESANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSS-QGD-LWSGGEGGV 284 (1133)
Q Consensus 208 ~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp-~g~-L~Sgs~Dgt 284 (1133)
...|...|+||+|+| ++++||+|+.||+|+|||+..... .....+.+|.+.|++|+|+| ++. |+|||.||+
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~------~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK------PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC------CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc------eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence 345777899999999 678999999999999999986332 44556789999999999998 567 999999999
Q ss_pred EEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCc
Q 043350 285 IKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKE 364 (1133)
Q Consensus 285 I~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~ 364 (1133)
|++||+++.........+... ..+..+. ..++..+++++ +.|+.|++||++ ++
T Consensus 189 v~iwd~~~~~~~~~~~~~~~~----------------~~~~~~~--~~~~~~~l~~g--------~~dg~i~~wd~~-~~ 241 (435)
T 4e54_B 189 TRLQDFKGNILRVFASSDTIN----------------IWFCSLD--VSASSRMVVTG--------DNVGNVILLNMD-GK 241 (435)
T ss_dssp EEEEETTSCEEEEEECCSSCS----------------CCCCCEE--EETTTTEEEEE--------CSSSBEEEEESS-SC
T ss_pred EEEeeccCCceeEEeccCCCC----------------ccEEEEE--ECCCCCEEEEE--------eCCCcEeeeccC-cc
Confidence 999999764222211111110 0000111 11233344445 778999999986 55
Q ss_pred eeEEEecCCcceeEEEeCCCCC-ccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEE
Q 043350 365 LLKVFNIEGHIENRVDTQSVQD-QPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTE 443 (1133)
Q Consensus 365 ~l~~~~~h~~~v~~l~~sp~g~-~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~ 443 (1133)
.+..+.+|...|++++|+|++. + +++|+.|++|+.|+.+....... + ....+|...|.
T Consensus 242 ~~~~~~~h~~~v~~v~~~p~~~~~---------~~s~s~d~~v~iwd~~~~~~~~~-------~-----~~~~~h~~~v~ 300 (435)
T 4e54_B 242 ELWNLRMHKKKVTHVALNPCCDWF---------LATASVDQTVKIWDLRQVRGKAS-------F-----LYSLPHRHPVN 300 (435)
T ss_dssp BCCCSBCCSSCEEEEEECTTCSSE---------EEEEETTSBCCEEETTTCCSSSC-------C-----SBCCBCSSCEE
T ss_pred eeEEEecccceEEeeeecCCCceE---------EEEecCcceeeEEecccccccce-------E-----EEeeecccccc
Confidence 6778889999999999999876 5 78999999998766443221100 0 01246788899
Q ss_pred EEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCc-------ceeE-EecCCCEEEEEe------------cCCeE
Q 043350 444 AMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQC-------AVQC-FCTYGSRMYVGY------------VSGYL 501 (1133)
Q Consensus 444 sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~-------~V~~-fs~dg~~Lasgs------------~DG~I 501 (1133)
+++|+|+| +|++|+.||+|++||+ ++.+...+..|.. .+.+ +++++.++++++ .++.|
T Consensus 301 ~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i 380 (435)
T 4e54_B 301 AACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTI 380 (435)
T ss_dssp ECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCE
T ss_pred ceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEE
Confidence 99999999 9999999999999999 6677777665542 2223 777777777765 34689
Q ss_pred EEEeCC-CCcceee-eccccCeEEe-eec--ccceeeecccCCeeeccccCCC
Q 043350 502 QILDLD-GNLTASW-IAHSSPVLKL-AVG--VDHIYSLAAHGGIRGWTFTSPS 549 (1133)
Q Consensus 502 ~vwd~~-g~~l~~~-~~H~~~V~~l-~fs--~~~L~S~s~Dg~I~lW~l~s~~ 549 (1133)
++||.. ++++..+ .+|...|.++ +|+ +.+|++++ |++|++|++....
T Consensus 381 ~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 381 DVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp EEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred EEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 999987 5666665 4788899987 587 77888765 8899999987643
No 62
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.96 E-value=2.4e-27 Score=266.85 Aligned_cols=254 Identities=15% Similarity=0.075 Sum_probs=192.1
Q ss_pred eeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeC--Cc-EEEEeCCC
Q 043350 207 YESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQ--GD-LWSGGEGG 283 (1133)
Q Consensus 207 ~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~--g~-L~Sgs~Dg 283 (1133)
++.+|..+|.+++|+|++++||+|+.|++|+||++..... +.+..+.+|.++|++|+|+++ |+ |+|||.|+
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~------~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~ 77 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTT
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc------EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCC
Confidence 4557888999999999999999999999999999975211 456788999999999999864 77 99999999
Q ss_pred cEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCC
Q 043350 284 VIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSK 363 (1133)
Q Consensus 284 tI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg 363 (1133)
+|++||+++.. .
T Consensus 78 ~v~iWd~~~~~--------------------------------------------------------------------~ 89 (297)
T 2pm7_B 78 KVMIWKEENGR--------------------------------------------------------------------W 89 (297)
T ss_dssp EEEEEEBSSSC--------------------------------------------------------------------B
T ss_pred EEEEEEcCCCc--------------------------------------------------------------------e
Confidence 99999975310 0
Q ss_pred ceeEEEecCCcceeEEEeCCC--CCccccccceEEEEeeCCCCccccccccc-----cceeeccCCceEEEEEecCCccc
Q 043350 364 ELLKVFNIEGHIENRVDTQSV--QDQPVEDEMKVKFVSSNKKEKPHGFLQRS-----RNAIMGAADAVRRVATRGAGAFV 436 (1133)
Q Consensus 364 ~~l~~~~~h~~~v~~l~~sp~--g~~~~e~e~~v~lasgs~Dg~i~~~~~~~-----~~~~~~~~~~V~~v~~~p~g~~~ 436 (1133)
..+..+.+|...|.+++|+|+ +.+ |++++.|++|+.|+.+. ...+.+|...|.+++|+|++...
T Consensus 90 ~~~~~~~~h~~~v~~v~~~p~~~g~~---------l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 90 SQIAVHAVHSASVNSVQWAPHEYGPM---------LLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp CCCEEECCCSSCEEEEEECCGGGCSE---------EEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred EEEEEeecCCCceeEEEeCcCCCCcE---------EEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence 122345567888999999997 778 99999999998555332 12234445555555555432110
Q ss_pred CCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCC----eeEEEecCCcceeE--EecCC---CEEEEEecCCeEEEEe
Q 043350 437 DDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGN----RVSDILHHQCAVQC--FCTYG---SRMYVGYVSGYLQILD 505 (1133)
Q Consensus 437 ~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~----~l~~~~~h~~~V~~--fs~dg---~~Lasgs~DG~I~vwd 505 (1133)
.. .....+++ +|++|+.||+|++||+ .+. ++..+.+|...|.+ |+|++ .+|++|+.||+|+|||
T Consensus 161 ~~-----~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 161 DG-----EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp --------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cc-----cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence 00 00001125 8999999999999998 444 56788899999998 99985 8999999999999999
Q ss_pred CCCC----cceee--eccccCeEEeeec--ccceeeecccCCeeeccccCC
Q 043350 506 LDGN----LTASW--IAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTSP 548 (1133)
Q Consensus 506 ~~g~----~l~~~--~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s~ 548 (1133)
++.. ....+ .+|...|.+++|+ +++|++++.||.|++|+....
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (297)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred eCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCC
Confidence 8742 11223 5788999999999 889999999999999997643
No 63
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.96 E-value=1.8e-27 Score=277.60 Aligned_cols=289 Identities=11% Similarity=0.120 Sum_probs=224.6
Q ss_pred eeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeC----C---c-EEE
Q 043350 207 YESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQ----G---D-LWS 278 (1133)
Q Consensus 207 ~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~----g---~-L~S 278 (1133)
.+.+|..+|+|++|+| ++|++|+.||+|++|++..... ...+.....+.+|..+|++++|+|+ | . |++
T Consensus 11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s 86 (397)
T 1sq9_A 11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDN--ENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 86 (397)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTT--CCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCccc--ccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE
Confidence 4557899999999998 8999999999999999987332 1223457788899999999999999 9 8 999
Q ss_pred EeCCCcEEEEeCCCCce-------eeEeCCCCceEEEEeecceEEEccCceeeeccccCCC--CCeEE-EEecCCceEEE
Q 043350 279 GGEGGVIKIWPWESIEK-------SLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISS--TEIKC-MLSDHARARVW 348 (1133)
Q Consensus 279 gs~DgtI~iWdl~~~~~-------~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~--~~~~~-l~S~d~~i~vw 348 (1133)
++.||.|++|++.+... .+..++.... ...+..+...+. ++... ++++
T Consensus 87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~~~~~l~~~------- 144 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMK---------------KHSFWALKWGASNDRLLSHRLVAT------- 144 (397)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGG---------------GSCEEEEEEECCC----CEEEEEE-------
T ss_pred EcCCCCEEEEEccCCcccccccceeecccccccC---------------CCcEEEEEEeeccCCCCceEEEEE-------
Confidence 99999999999876321 1111110000 011111122110 23333 4444
Q ss_pred ecCCCceeEeecCC------CceeE-----EEec-------CCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccc
Q 043350 349 CAQPLSFSLWDARS------KELLK-----VFNI-------EGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFL 410 (1133)
Q Consensus 349 ss~d~~I~lWD~~t------g~~l~-----~~~~-------h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~ 410 (1133)
+.|+.|++||+.+ ++.+. .+.+ |...+.+++|+|++ + +++++.|+.|+.|+
T Consensus 145 -~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~---------l~~~~~dg~i~i~d 213 (397)
T 1sq9_A 145 -DVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L---------IATGFNNGTVQISE 213 (397)
T ss_dssp -ETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E---------EEEECTTSEEEEEE
T ss_pred -eCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e---------EEEEeCCCcEEEEE
Confidence 7789999999998 77776 7744 78889999999999 9 99999999998666
Q ss_pred ccccceeeccCCceEEEEEecCCcccC---C---CCCEEEEEECCCC-eEEEEecC---CeEEEEeC-CCCeeEEEec--
Q 043350 411 QRSRNAIMGAADAVRRVATRGAGAFVD---D---TKRTEAMVLTADG-MIWSGCTN---GLLVQWDG-NGNRVSDILH-- 477 (1133)
Q Consensus 411 ~~~~~~~~~~~~~V~~v~~~p~g~~~~---h---~~~V~sl~~spdg-~L~sgs~D---G~I~vWd~-~g~~l~~~~~-- 477 (1133)
.+.... +.. +.. | ...|.+++|+|++ +|++++.| |.|++||+ +++++..+..
T Consensus 214 ~~~~~~-------~~~--------~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~ 278 (397)
T 1sq9_A 214 LSTLRP-------LYN--------FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT 278 (397)
T ss_dssp TTTTEE-------EEE--------EECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-
T ss_pred CCCCce-------eEE--------EeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCc
Confidence 442211 111 223 6 7889999999999 99999999 99999999 6788999988
Q ss_pred -----------CCcceeE--EecCCCEEEEEecCCeEEEEeCC-CCcceeee------cc---------------ccCeE
Q 043350 478 -----------HQCAVQC--FCTYGSRMYVGYVSGYLQILDLD-GNLTASWI------AH---------------SSPVL 522 (1133)
Q Consensus 478 -----------h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~------~H---------------~~~V~ 522 (1133)
|...|.+ |+|++++|++|+.||.|++||+. ++++..+. +| ..+|.
T Consensus 279 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~ 358 (397)
T 1sq9_A 279 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVF 358 (397)
T ss_dssp -------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEE
T ss_pred ccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCcee
Confidence 9999998 99999999999999999999997 56788888 88 99999
Q ss_pred Eeeec--c----------cceeeecccCCeeeccccC
Q 043350 523 KLAVG--V----------DHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 523 ~l~fs--~----------~~L~S~s~Dg~I~lW~l~s 547 (1133)
+++|+ + ++|++++.||.|++|++..
T Consensus 359 ~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 359 DVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp EEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred EEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 99999 4 5899999999999999865
No 64
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=7.9e-28 Score=279.44 Aligned_cols=295 Identities=10% Similarity=0.087 Sum_probs=205.6
Q ss_pred CCeEEEEEeCCCCEEEEEeCCC-------eEEEEeCCCCCCCCCCCcc--cccccccCCCCeEEEEEeeC---------C
Q 043350 213 SPTMCLMVDCGNRLVWTGHKDG-------KIRSWKMDQTLDDANNPFK--EGLSWQAHRGPVLAMIFSSQ---------G 274 (1133)
Q Consensus 213 s~V~~la~spd~~~LaSgs~Dg-------~V~vWd~~~~~~~~~~~~~--~~~~l~gH~~~V~sl~fsp~---------g 274 (1133)
-||+|++|+|++++|++|+.|. .|++|+++.........+. ....+.+|...|.+++++++ +
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~ 94 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENS 94 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCH
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCc
Confidence 4999999999999999998643 5999998752220000000 11246788899999887642 1
Q ss_pred c-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCC
Q 043350 275 D-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPL 353 (1133)
Q Consensus 275 ~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~ 353 (1133)
. |++++.|+++++|++......+.... ...... .. .....+..++..+++...+++++ +.|+
T Consensus 95 ~~l~s~~~d~~~r~~~~~~~~~~~~~~~------~~~~~~-~~--~~~~~~~~v~fSpDg~~la~as~--------~~d~ 157 (365)
T 4h5i_A 95 TKITQGKGNKHLRKFKYDKVNDQLEFLT------SVDFDA-ST--NADDYTKLVYISREGTVAAIASS--------KVPA 157 (365)
T ss_dssp HHHHHTSCCCCEEEEEEETTTTEEEEEE------EECSSC-CC--CTTCCEEEEEECTTSSCEEEEES--------CSSC
T ss_pred cEEEEecCCCcEEEEEecCCCceEEEee------eeceee-cC--CcccCEEEEEEcCCCCEEEEEEC--------CCCC
Confidence 1 44455678888888765211111000 000000 00 00001112233355666666666 7899
Q ss_pred ceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCC
Q 043350 354 SFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAG 433 (1133)
Q Consensus 354 ~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g 433 (1133)
+|+|||+.+++++..+. |...|.+++|+|++++ +++++.++.+..+.... .. +. ..
T Consensus 158 ~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~---------l~s~s~~~~~~~~~~~~-~~-------~~--~~---- 213 (365)
T 4h5i_A 158 IMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKV---------VAYITGSSLEVISTVTG-SC-------IA--RK---- 213 (365)
T ss_dssp EEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSE---------EEEECSSCEEEEETTTC-CE-------EE--EE----
T ss_pred EEEEeECCCCcEEEEeC-CCCceEEEEEccCCce---------EEeccceeEEEEEeccC-cc-------ee--ee----
Confidence 99999999999998886 6677999999999999 99998766543221110 00 00 00
Q ss_pred cccCCCCCEEEEEECCCC-eEEEEecCC----eEEEEeCCC-C----eeEEEecCCcceeE--EecCCCEEEEEecCCeE
Q 043350 434 AFVDDTKRTEAMVLTADG-MIWSGCTNG----LLVQWDGNG-N----RVSDILHHQCAVQC--FCTYGSRMYVGYVSGYL 501 (1133)
Q Consensus 434 ~~~~h~~~V~sl~~spdg-~L~sgs~DG----~I~vWd~~g-~----~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I 501 (1133)
....|...|.+++|+|++ .+++++.|+ .+++|+... . ....+..|...|++ |+|+|++||+|+.||+|
T Consensus 214 ~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V 293 (365)
T 4h5i_A 214 TDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSI 293 (365)
T ss_dssp CCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCE
T ss_pred ecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEE
Confidence 124567778899999999 899999887 688898833 2 24567789999998 99999999999999999
Q ss_pred EEEeCC-CCcceee-eccccCeEEeeec--ccceeeecccCCeeeccccCC
Q 043350 502 QILDLD-GNLTASW-IAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTSP 548 (1133)
Q Consensus 502 ~vwd~~-g~~l~~~-~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s~ 548 (1133)
+|||+. ++++..+ .+|..+|++|+|+ +++|+|+|.|++||||++...
T Consensus 294 ~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 294 ALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999997 5677764 7899999999999 899999999999999999653
No 65
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.96 E-value=8.1e-27 Score=294.39 Aligned_cols=290 Identities=16% Similarity=0.219 Sum_probs=216.3
Q ss_pred eeeccCCCccccccceEEEEE-eCC-CCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEE
Q 043350 143 LELRPHPLKETQAGRFLRNIA-CTD-TQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCL 218 (1133)
Q Consensus 143 ~~l~~H~~~~~~~g~~V~~v~-s~d-g~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~l 218 (1133)
..+++|.. .|++|+ +++ +.+|+ +.|++|++|++....... +. ....+.+|...|.|+
T Consensus 376 ~~l~~H~~-------~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~-~~-----------~~~~~~~h~~~v~~v 436 (694)
T 3dm0_A 376 GTMRAHTD-------MVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY-GV-----------AQRRLTGHSHFVEDV 436 (694)
T ss_dssp EEEECCSS-------CEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS-CE-----------EEEEEECCSSCEEEE
T ss_pred hhcccCCc-------eeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc-cc-----------ccceecCCCCcEEEE
Confidence 46889999 999999 665 46777 889999999987632111 00 022456899999999
Q ss_pred EEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceee
Q 043350 219 MVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSL 297 (1133)
Q Consensus 219 a~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l 297 (1133)
+|+|++++|+||+.||+|+|||+..+ .....+.+|...|++++|+|+++ |+|||.|++|++||........
T Consensus 437 ~~s~~g~~l~sgs~Dg~v~vwd~~~~--------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~ 508 (694)
T 3dm0_A 437 VLSSDGQFALSGSWDGELRLWDLAAG--------VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYT 508 (694)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE
T ss_pred EECCCCCEEEEEeCCCcEEEEECCCC--------cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCccee
Confidence 99999999999999999999999761 45667899999999999999999 9999999999999986432111
Q ss_pred EeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCccee
Q 043350 298 SLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIEN 377 (1133)
Q Consensus 298 ~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~ 377 (1133)
.......+ ...+..+...+......++++ +.|++|++||++++++...+.+|...|+
T Consensus 509 ~~~~~~~h---------------~~~v~~~~~~~~~~~~~l~s~--------s~d~~v~vwd~~~~~~~~~~~~h~~~v~ 565 (694)
T 3dm0_A 509 ISEGGEGH---------------RDWVSCVRFSPNTLQPTIVSA--------SWDKTVKVWNLSNCKLRSTLAGHTGYVS 565 (694)
T ss_dssp ECSSTTSC---------------SSCEEEEEECSCSSSCEEEEE--------ETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred eccCCCCC---------------CCcEEEEEEeCCCCcceEEEE--------eCCCeEEEEECCCCcEEEEEcCCCCCEE
Confidence 10000000 001222222243333455666 7899999999999999999999999999
Q ss_pred EEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEe
Q 043350 378 RVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGC 457 (1133)
Q Consensus 378 ~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs 457 (1133)
+++|+|++.+ |++|+.|++|+.|+.+....+. . ..+...|.+++|+|++.+++++
T Consensus 566 ~v~~spdg~~---------l~sg~~Dg~i~iwd~~~~~~~~-----------~-----~~~~~~v~~~~~sp~~~~l~~~ 620 (694)
T 3dm0_A 566 TVAVSPDGSL---------CASGGKDGVVLLWDLAEGKKLY-----------S-----LEANSVIHALCFSPNRYWLCAA 620 (694)
T ss_dssp EEEECTTSSE---------EEEEETTSBCEEEETTTTEEEE-----------C-----CBCSSCEEEEEECSSSSEEEEE
T ss_pred EEEEeCCCCE---------EEEEeCCCeEEEEECCCCceEE-----------E-----ecCCCcEEEEEEcCCCcEEEEE
Confidence 9999999999 9999999999877654322211 1 1234568899999999555556
Q ss_pred cCCeEEEEeC-CCCeeEEEecCC-------------------cceeE--EecCCCEEEEEecCCeEEEEeCC
Q 043350 458 TNGLLVQWDG-NGNRVSDILHHQ-------------------CAVQC--FCTYGSRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 458 ~DG~I~vWd~-~g~~l~~~~~h~-------------------~~V~~--fs~dg~~Lasgs~DG~I~vwd~~ 507 (1133)
.|+.|++||+ .+.++..+..+. ..+++ |+|+|++|++|+.||+|+|||+.
T Consensus 621 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 621 TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 6788999999 456666554321 12444 99999999999999999999975
No 66
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.9e-26 Score=258.84 Aligned_cols=281 Identities=16% Similarity=0.174 Sum_probs=227.7
Q ss_pred CeeeeccCCCccccccceEEEEEeCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEE
Q 043350 141 PCLELRPHPLKETQAGRFLRNIACTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCL 218 (1133)
Q Consensus 141 ~~~~l~~H~~~~~~~g~~V~~v~s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~l 218 (1133)
+...+++|.. .|++++.+++.+++ +.||.|++||+.+... ......|..+|.++
T Consensus 10 ~~~~l~~h~~-------~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~-----------------~~~~~~~~~~v~~~ 65 (313)
T 3odt_A 10 LSATLKGHDQ-------DVRDVVAVDDSKVASVSRDGTVRLWSKDDQWL-----------------GTVVYTGQGFLNSV 65 (313)
T ss_dssp EEEEECCCSS-------CEEEEEEEETTEEEEEETTSEEEEEEESSSEE-----------------EEEEEECSSCEEEE
T ss_pred HHHHhhCCCC-------CcEEEEecCCCEEEEEEcCCcEEEEECCCCEE-----------------EEEeecCCccEEEE
Confidence 3778999999 99999966666666 8899999999865321 22455678899999
Q ss_pred EEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceee
Q 043350 219 MVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSL 297 (1133)
Q Consensus 219 a~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l 297 (1133)
+|+|++++|++|+.||.|++|++... ...+....+.+|...|.+++| ++. |++++.||.|++||..
T Consensus 66 ~~~~~~~~l~~~~~dg~i~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~------ 132 (313)
T 3odt_A 66 CYDSEKELLLFGGKDTMINGVPLFAT-----SGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEG------ 132 (313)
T ss_dssp EEETTTTEEEEEETTSCEEEEETTCC-----TTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT------
T ss_pred EECCCCCEEEEecCCCeEEEEEeeec-----CCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCC------
Confidence 99999999999999999999999762 222556678899999999999 466 9999999999999821
Q ss_pred EeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCccee
Q 043350 298 SLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIEN 377 (1133)
Q Consensus 298 ~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~ 377 (1133)
+.+..+..|...+.
T Consensus 133 ------------------------------------------------------------------~~~~~~~~~~~~v~ 146 (313)
T 3odt_A 133 ------------------------------------------------------------------SLVYNLQAHNASVW 146 (313)
T ss_dssp ------------------------------------------------------------------EEEEEEECCSSCEE
T ss_pred ------------------------------------------------------------------cEEEecccCCCcee
Confidence 12234455677788
Q ss_pred EEEeCC-CCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEE
Q 043350 378 RVDTQS-VQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSG 456 (1133)
Q Consensus 378 ~l~~sp-~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sg 456 (1133)
++.+.| ++.. +++++.|+.++.|+.... + ..+. ..+...+.+++++|++.++++
T Consensus 147 ~~~~~~~~~~~---------l~~~~~d~~i~i~d~~~~---------~--~~~~-----~~~~~~i~~~~~~~~~~~~~~ 201 (313)
T 3odt_A 147 DAKVVSFSENK---------FLTASADKTIKLWQNDKV---------I--KTFS-----GIHNDVVRHLAVVDDGHFISC 201 (313)
T ss_dssp EEEEEETTTTE---------EEEEETTSCEEEEETTEE---------E--EEEC-----SSCSSCEEEEEEEETTEEEEE
T ss_pred EEEEccCCCCE---------EEEEECCCCEEEEecCce---------E--EEEe-----ccCcccEEEEEEcCCCeEEEc
Confidence 888887 7878 999999999976652210 0 1111 226778899999999989999
Q ss_pred ecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCC-CCcceeeeccccCeEEeeec-ccce
Q 043350 457 CTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLD-GNLTASWIAHSSPVLKLAVG-VDHI 531 (1133)
Q Consensus 457 s~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~H~~~V~~l~fs-~~~L 531 (1133)
+.||.|++||+ +++++..+..|...|.+ |+|++ +|++|+.||.|++||+. ++++..+..|...|.+++|+ ...+
T Consensus 202 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 280 (313)
T 3odt_A 202 SNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDI 280 (313)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCE
T ss_pred cCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCE
Confidence 99999999999 67899999999999998 99999 69999999999999986 57888899999999999999 4458
Q ss_pred eeecccCCeeeccccCCCC
Q 043350 532 YSLAAHGGIRGWTFTSPSP 550 (1133)
Q Consensus 532 ~S~s~Dg~I~lW~l~s~~~ 550 (1133)
++++.||.|++|++.....
T Consensus 281 ~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 281 IVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp EEEETTSCEEEEESCGGGC
T ss_pred EEEeCCCcEEEEeCCCCce
Confidence 8899999999999876443
No 67
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.96 E-value=8.1e-28 Score=276.21 Aligned_cols=294 Identities=12% Similarity=0.125 Sum_probs=222.8
Q ss_pred eeccCCCccccccceEEEEE-eCC---C--CeEE-ecCCcEEEeeCCCCC--CcCcCCCccccCCCCCCCceeeccCCCC
Q 043350 144 ELRPHPLKETQAGRFLRNIA-CTD---T--QLWA-GQECGVRFWNLEDSY--EPGAGIGGRVRRGDEDAAPFYESANTSP 214 (1133)
Q Consensus 144 ~l~~H~~~~~~~g~~V~~v~-s~d---g--~lla-s~Dg~VrvWdl~~~~--~~~~gh~~~v~~g~~~~~~~~~~~h~s~ 214 (1133)
...+|.. .|++++ +|+ + .+++ +.++.|++||+.... ..+..| ....|...
T Consensus 13 ~~~~h~~-------~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~--------------~~~~~~~~ 71 (366)
T 3k26_A 13 LKEDHNQ-------PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSY--------------VDADADEN 71 (366)
T ss_dssp EECTTCS-------CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEE--------------ECSCTTCC
T ss_pred eecCCCC-------ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeec--------------cccCCCCc
Confidence 3457888 999999 763 3 3666 778899999988532 122111 12236778
Q ss_pred eEEEEEeCC----CCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEee-CCc-EEEEeCCCcEEEE
Q 043350 215 TMCLMVDCG----NRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSS-QGD-LWSGGEGGVIKIW 288 (1133)
Q Consensus 215 V~~la~spd----~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp-~g~-L~Sgs~DgtI~iW 288 (1133)
|.+++|+|+ +.+|++|+.||.|++||+..+ +.+..+.+|...|++++|+| ++. |++|+.||+|++|
T Consensus 72 v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iw 143 (366)
T 3k26_A 72 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM--------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 143 (366)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC--------CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred EEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc--------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 999999998 679999999999999999851 45667889999999999999 788 9999999999999
Q ss_pred eCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEE
Q 043350 289 PWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKV 368 (1133)
Q Consensus 289 dl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~ 368 (1133)
|+++ ++.+..
T Consensus 144 d~~~----------------------------------------------------------------------~~~~~~ 153 (366)
T 3k26_A 144 NIQT----------------------------------------------------------------------DTLVAI 153 (366)
T ss_dssp ETTT----------------------------------------------------------------------TEEEEE
T ss_pred Eeec----------------------------------------------------------------------CeEEEE
Confidence 9853 222233
Q ss_pred E---ecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccce---eec--------cCCceE--EEEEecC
Q 043350 369 F---NIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNA---IMG--------AADAVR--RVATRGA 432 (1133)
Q Consensus 369 ~---~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~---~~~--------~~~~V~--~v~~~p~ 432 (1133)
+ ..|...|.+++|+|++.+ +++++.|+.++.|+.+.... +.. ...... ......-
T Consensus 154 ~~~~~~~~~~v~~~~~~~~~~~---------l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (366)
T 3k26_A 154 FGGVEGHRDEVLSADYDLLGEK---------IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDF 224 (366)
T ss_dssp ECSTTSCSSCEEEEEECTTSSE---------EEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSE
T ss_pred ecccccccCceeEEEECCCCCE---------EEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcc
Confidence 3 457788999999999999 99999999998655432111 110 000000 0000000
Q ss_pred CcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeC-CCC--------------eeEEEecCCcceeE--EecC--CCEEE
Q 043350 433 GAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDG-NGN--------------RVSDILHHQCAVQC--FCTY--GSRMY 493 (1133)
Q Consensus 433 g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~-~g~--------------~l~~~~~h~~~V~~--fs~d--g~~La 493 (1133)
.....|...|.+++|+ ..+|++++.||.|++||+ .+. .+..+..|...|++ |+|+ +++|+
T Consensus 225 ~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~ 303 (366)
T 3k26_A 225 STRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLA 303 (366)
T ss_dssp EECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEE
T ss_pred ccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEE
Confidence 1134588899999998 339999999999999998 332 37778889999998 9999 99999
Q ss_pred EEecCCeEEEEeCCC-C----cceeeecc--ccCeEEeeec--ccceeeecccCCeeecccc
Q 043350 494 VGYVSGYLQILDLDG-N----LTASWIAH--SSPVLKLAVG--VDHIYSLAAHGGIRGWTFT 546 (1133)
Q Consensus 494 sgs~DG~I~vwd~~g-~----~l~~~~~H--~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~ 546 (1133)
+|+.||.|++||+.. + ....+.+| ...|++++|+ +++|++++.||.|++||+.
T Consensus 304 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 304 LGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 999999999999974 3 33478888 7999999999 8899999999999999974
No 68
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.96 E-value=1.6e-27 Score=273.03 Aligned_cols=284 Identities=11% Similarity=0.085 Sum_probs=216.0
Q ss_pred eeeeccCCCccccccceEEEEE-eCCCC-eEE-e-c---CCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCC
Q 043350 142 CLELRPHPLKETQAGRFLRNIA-CTDTQ-LWA-G-Q---ECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSP 214 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V~~v~-s~dg~-lla-s-~---Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~ 214 (1133)
...+.+|.. .|.+++ ++++. +++ + . |+.|++||+.+.... ......|..+
T Consensus 11 ~~~~~~h~~-------~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~----------------~~~~~~~~~~ 67 (357)
T 3i2n_A 11 AHIQKGFNY-------TVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK----------------LLREIEKAKP 67 (357)
T ss_dssp EEEEEECSS-------CEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE----------------EEEEEEESSC
T ss_pred hhhccCCCC-------ceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc----------------ceeeecccCc
Confidence 345577888 999999 99885 444 3 2 899999998863211 1223367889
Q ss_pred eEEEEEeCC---CCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEE------eeCCc-EEEEeCCCc
Q 043350 215 TMCLMVDCG---NRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIF------SSQGD-LWSGGEGGV 284 (1133)
Q Consensus 215 V~~la~spd---~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~f------sp~g~-L~Sgs~Dgt 284 (1133)
|.|++|+|+ +.+|++|+.||.|++||+..+. ..+..+.+|...|.+++| +|+++ |++|+.||+
T Consensus 68 v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~ 140 (357)
T 3i2n_A 68 IKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE-------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT 140 (357)
T ss_dssp EEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS-------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred EEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC-------ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCe
Confidence 999999998 6999999999999999998621 256678899999999965 67888 999999999
Q ss_pred EEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCc
Q 043350 285 IKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKE 364 (1133)
Q Consensus 285 I~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~ 364 (1133)
|++||+.....
T Consensus 141 i~vwd~~~~~~--------------------------------------------------------------------- 151 (357)
T 3i2n_A 141 VKVWDPRQKDD--------------------------------------------------------------------- 151 (357)
T ss_dssp EEEECTTSCSS---------------------------------------------------------------------
T ss_pred EEEEeCCCCCC---------------------------------------------------------------------
Confidence 99999864210
Q ss_pred eeEEEecC----CcceeEEE----eCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCccc
Q 043350 365 LLKVFNIE----GHIENRVD----TQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFV 436 (1133)
Q Consensus 365 ~l~~~~~h----~~~v~~l~----~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~ 436 (1133)
.+..+..+ ...+.+++ |+|++.+ +++++.|+.|+.|+.+.... .. ..
T Consensus 152 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---------l~~~~~d~~i~i~d~~~~~~----------~~------~~ 206 (357)
T 3i2n_A 152 PVANMEPVQGENKRDCWTVAFGNAYNQEERV---------VCAGYDNGDIKLFDLRNMAL----------RW------ET 206 (357)
T ss_dssp CSEEECCCTTSCCCCEEEEEEECCCC-CCCE---------EEEEETTSEEEEEETTTTEE----------EE------EE
T ss_pred cceeccccCCCCCCceEEEEEEeccCCCCCE---------EEEEccCCeEEEEECccCce----------ee------ec
Confidence 01111111 12455555 7889999 99999999998665443221 00 13
Q ss_pred CCCCCEEEEEECC---CC-eEEEEecCCeEEEEeC-CCCeeEEE-----ecCCcceeE--EecCCC-EEEEEecCCeEEE
Q 043350 437 DDTKRTEAMVLTA---DG-MIWSGCTNGLLVQWDG-NGNRVSDI-----LHHQCAVQC--FCTYGS-RMYVGYVSGYLQI 503 (1133)
Q Consensus 437 ~h~~~V~sl~~sp---dg-~L~sgs~DG~I~vWd~-~g~~l~~~-----~~h~~~V~~--fs~dg~-~Lasgs~DG~I~v 503 (1133)
.+...|.+++|+| ++ .|++|+.||.|++||+ .++.+..+ ..|...|++ |+|+++ +|++|+.||.|++
T Consensus 207 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 286 (357)
T 3i2n_A 207 NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHL 286 (357)
T ss_dssp ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEE
Confidence 4567788999998 78 9999999999999998 44333333 489999998 999998 8999999999999
Q ss_pred EeCCC--------------------CcceeeeccccCeEEeeec--cccee-eecccCCeeeccccCCC
Q 043350 504 LDLDG--------------------NLTASWIAHSSPVLKLAVG--VDHIY-SLAAHGGIRGWTFTSPS 549 (1133)
Q Consensus 504 wd~~g--------------------~~l~~~~~H~~~V~~l~fs--~~~L~-S~s~Dg~I~lW~l~s~~ 549 (1133)
||+.. +++..+.+|.++|++++|+ +++|+ |++.||.|++|++....
T Consensus 287 wd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 287 WKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred eecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 99863 2567788999999999999 77888 89999999999987643
No 69
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.96 E-value=5.3e-27 Score=273.08 Aligned_cols=280 Identities=9% Similarity=0.035 Sum_probs=216.4
Q ss_pred eeeeccCCCccccccceEEEEE-eCCC-CeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEE
Q 043350 142 CLELRPHPLKETQAGRFLRNIA-CTDT-QLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMC 217 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V~~v~-s~dg-~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~ 217 (1133)
...+.+|.. .|++++ ++++ ++++ +.|+.|++||+.+..... .+....|..+|.+
T Consensus 66 ~~~~~~h~~-------~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---------------~~~~~~h~~~v~~ 123 (383)
T 3ei3_B 66 HRTASPFDR-------RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS---------------FIQGMGPGDAITG 123 (383)
T ss_dssp EEEECCCSS-------CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE---------------EECCCSTTCBEEE
T ss_pred EEeccCCCC-------CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce---------------eeecCCcCCceeE
Confidence 567788988 999999 9988 7777 889999999998632211 1112358889999
Q ss_pred EEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCCccccccc---ccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCC
Q 043350 218 LMVDC-GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSW---QAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWES 292 (1133)
Q Consensus 218 la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l---~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~ 292 (1133)
++|+| ++++|++|+.|+.|++||+.+ .....+ .+|...|.+++|+|+++ |++|+.|+.|++||++
T Consensus 124 ~~~~~~~~~~l~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~- 193 (383)
T 3ei3_B 124 MKFNQFNTNQLFVSSIRGATTLRDFSG---------SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD- 193 (383)
T ss_dssp EEEETTEEEEEEEEETTTEEEEEETTS---------CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-
T ss_pred EEeCCCCCCEEEEEeCCCEEEEEECCC---------CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-
Confidence 99999 789999999999999999986 334444 44568999999999999 9999999999999873
Q ss_pred CceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecC
Q 043350 293 IEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIE 372 (1133)
Q Consensus 293 ~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h 372 (1133)
++.+..+..|
T Consensus 194 ----------------------------------------------------------------------~~~~~~~~~h 203 (383)
T 3ei3_B 194 ----------------------------------------------------------------------GHEIFKEKLH 203 (383)
T ss_dssp ----------------------------------------------------------------------SCEEEEEECS
T ss_pred ----------------------------------------------------------------------CCEEEEeccC
Confidence 2233456678
Q ss_pred CcceeEEEeCCCCC-ccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECC-C
Q 043350 373 GHIENRVDTQSVQD-QPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTA-D 450 (1133)
Q Consensus 373 ~~~v~~l~~sp~g~-~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~sp-d 450 (1133)
...|.+++|+|++. + +++++.|++|+.|+.+.... ....+. ..+|...|.+++|+| +
T Consensus 204 ~~~v~~~~~~~~~~~~---------l~s~~~d~~i~iwd~~~~~~---~~~~~~---------~~~~~~~v~~~~~s~~~ 262 (383)
T 3ei3_B 204 KAKVTHAEFNPRCDWL---------MATSSVDATVKLWDLRNIKD---KNSYIA---------EMPHEKPVNAAYFNPTD 262 (383)
T ss_dssp SSCEEEEEECSSCTTE---------EEEEETTSEEEEEEGGGCCS---TTCEEE---------EEECSSCEEEEEECTTT
T ss_pred CCcEEEEEECCCCCCE---------EEEEeCCCEEEEEeCCCCCc---ccceEE---------EecCCCceEEEEEcCCC
Confidence 88999999999998 7 99999999998666543110 000011 114677899999999 8
Q ss_pred C-eEEEEecCCeEEEEeC-CCCeeEEEecCC-------cceeE------------EecCCCEEEEEecCCeEEEEeCC-C
Q 043350 451 G-MIWSGCTNGLLVQWDG-NGNRVSDILHHQ-------CAVQC------------FCTYGSRMYVGYVSGYLQILDLD-G 508 (1133)
Q Consensus 451 g-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~-------~~V~~------------fs~dg~~Lasgs~DG~I~vwd~~-g 508 (1133)
+ +|++++.||.|++||+ +++++..+..|. ..+.+ ++|+|++ +|+.||.|++||+. +
T Consensus 263 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~ 340 (383)
T 3ei3_B 263 STKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG 340 (383)
T ss_dssp SCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC
T ss_pred CCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC
Confidence 8 9999999999999999 556666665443 22322 4555555 66789999999986 6
Q ss_pred Ccceeeec--cccCeEEeeec--ccceeeecccCCeeeccccC
Q 043350 509 NLTASWIA--HSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 509 ~~l~~~~~--H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s 547 (1133)
+++..+.+ |...+..++|+ +.+|++++ ||.|++|++..
T Consensus 341 ~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 341 GLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred ceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 77888887 56778888998 88888886 99999999864
No 70
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.96 E-value=2.5e-27 Score=303.84 Aligned_cols=395 Identities=10% Similarity=0.075 Sum_probs=281.1
Q ss_pred CCCCcccCCCCcccc-ccCCCCc-cc--ccCCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeecc
Q 043350 72 DDDLFSNNSNVITTS-GVPVNED-YV--CPGPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRP 147 (1133)
Q Consensus 72 ~d~~~~~s~s~~~~~-~~~p~~~-~~--~~~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~ 147 (1133)
+|+..++.++.+.+. +|..... .. ..+|..++.. +.|+|++++|++|+.||.|++|+..+ ++. +..+.+
T Consensus 23 p~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~---~~~s~~~~~l~~~~~dg~i~vw~~~~---~~~-~~~~~~ 95 (814)
T 3mkq_A 23 PTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRA---GKFIARKNWIIVGSDDFRIRVFNYNT---GEK-VVDFEA 95 (814)
T ss_dssp SSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE---EEEEGGGTEEEEEETTSEEEEEETTT---CCE-EEEEEC
T ss_pred CCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEE---EEEeCCCCEEEEEeCCCeEEEEECCC---CcE-EEEEec
Confidence 466667766666655 5653332 22 2256655555 88999999999999999999999874 555 788999
Q ss_pred CCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC-C
Q 043350 148 HPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC-G 223 (1133)
Q Consensus 148 H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp-d 223 (1133)
|.. .|++++ ++++.+++ +.|++|++||+.+.... ......|..+|.|++|+| +
T Consensus 96 ~~~-------~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~----------------~~~~~~~~~~v~~~~~~p~~ 152 (814)
T 3mkq_A 96 HPD-------YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL----------------EQTFEGHEHFVMCVAFNPKD 152 (814)
T ss_dssp CSS-------CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEE----------------EEEEECCSSCEEEEEEETTE
T ss_pred CCC-------CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceE----------------EEEEcCCCCcEEEEEEEcCC
Confidence 998 999999 99998888 88999999998753111 224557888999999999 8
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccC-CCCeEEEEEee--CCc-EEEEeCCCcEEEEeCCCC------
Q 043350 224 NRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAH-RGPVLAMIFSS--QGD-LWSGGEGGVIKIWPWESI------ 293 (1133)
Q Consensus 224 ~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH-~~~V~sl~fsp--~g~-L~Sgs~DgtI~iWdl~~~------ 293 (1133)
+..|++|+.||+|++||+..+ .....+..| ...|.+++|+| ++. |++|+.||+|++||+.+.
T Consensus 153 ~~~l~~~~~dg~v~vwd~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 224 (814)
T 3mkq_A 153 PSTFASGCLDRTVKVWSLGQS--------TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224 (814)
T ss_dssp EEEEEEEETTSEEEEEETTCS--------SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCC--------cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 999999999999999999751 223344444 58999999999 888 999999999999998762
Q ss_pred ------ceeeEeCCCCceEEEEeecce--EEEccCceeeeccccCCCCCeEEEEecCCce-EEEecCCCceeEeecCCCc
Q 043350 294 ------EKSLSLKPEEKHMAALLVERS--FIDLRAQVTVNGACSISSTEIKCMLSDHARA-RVWCAQPLSFSLWDARSKE 364 (1133)
Q Consensus 294 ------~~~l~~~~~~~~l~s~~~d~s--~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i-~vwss~d~~I~lWD~~tg~ 364 (1133)
+..+.+++++..+++++.++. +|++.+...+..+..+...-..+..+.++.. .+..+.++.+.+|++..+.
T Consensus 225 ~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence 446678888989999988887 8888765544444332221111222333221 2333445555556554322
Q ss_pred eeE-------------------------------------------EEecCCcceeEEEeCCCCCccccccceEEEEeeC
Q 043350 365 LLK-------------------------------------------VFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSN 401 (1133)
Q Consensus 365 ~l~-------------------------------------------~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs 401 (1133)
... .+..+...+.+++|+|++++ +++++
T Consensus 305 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~---------la~~~ 375 (814)
T 3mkq_A 305 PTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRF---------VTVVG 375 (814)
T ss_dssp CCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSE---------EEEEE
T ss_pred ceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCE---------EEEec
Confidence 211 11223334667888888877 77776
Q ss_pred CCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCCCCeeEEEecCCc
Q 043350 402 KKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGNGNRVSDILHHQC 480 (1133)
Q Consensus 402 ~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g~~l~~~~~h~~ 480 (1133)
++.+..|...... ..+.+.+.+++|+|++ .+++++.+|.|++|+. +.+|..
T Consensus 376 -~~~~~i~~~~~~~--------------------~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~-------~~~~~~ 427 (814)
T 3mkq_A 376 -DGEYVIYTALAWR--------------------NKAFGKCQDFVWGPDSNSYALIDETGQIKYYKN-------FKEVTS 427 (814)
T ss_dssp -TTEEEEEETTTTE--------------------EEEEEECSEEEECTTSSCEEEECTTCCEEEEET-------TEECTT
T ss_pred -CCEEEEEECcccc--------------------ccCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC-------CCCccc
Confidence 6666433321100 0112345678899999 9999999999999963 345666
Q ss_pred ceeE--EecCC---CEEEEEecCCeEEEEeCC-CCcceeeeccccCeEEeeec--ccceeee------cccCCeeecc
Q 043350 481 AVQC--FCTYG---SRMYVGYVSGYLQILDLD-GNLTASWIAHSSPVLKLAVG--VDHIYSL------AAHGGIRGWT 544 (1133)
Q Consensus 481 ~V~~--fs~dg---~~Lasgs~DG~I~vwd~~-g~~l~~~~~H~~~V~~l~fs--~~~L~S~------s~Dg~I~lW~ 544 (1133)
.+.+ |+|+| .+|++++.||+|++||+. ++++..+..|.. .+.|+ +++|+++ +.++.+.+|.
T Consensus 428 ~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 428 WSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp CCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred eEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 6776 89998 689999999999999987 677888888776 88888 8899999 6665555654
No 71
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.95 E-value=6.3e-27 Score=275.40 Aligned_cols=285 Identities=13% Similarity=0.107 Sum_probs=229.7
Q ss_pred EEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCe
Q 043350 159 LRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGK 235 (1133)
Q Consensus 159 V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~ 235 (1133)
+++++ ++++++++ +.|+.|++||+.+..... ....| ..+.+..|++++++|++|+.||.
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~-----------------~~~~~-~~~~~~~~~~~~~~l~~~~~dg~ 120 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK-----------------MLKRA-DYTAVDTAKLQMRRFILGTTEGD 120 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTT-----------------TSCSC-CEEEEEEECSSSCEEEEEETTSC
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceee-----------------EEecC-CceEEEEEecCCCEEEEEECCCC
Confidence 34566 88888888 889999999988732211 11122 23455578999999999999999
Q ss_pred EEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecce
Q 043350 236 IRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERS 314 (1133)
Q Consensus 236 V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s 314 (1133)
|++||+..+ .....+.+|.+.|++++|+|+++ |++|+.|++|++||+.+
T Consensus 121 i~iwd~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~---------------------- 170 (420)
T 3vl1_A 121 IKVLDSNFN--------LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD---------------------- 170 (420)
T ss_dssp EEEECTTSC--------EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----------------------
T ss_pred EEEEeCCCc--------ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCC----------------------
Confidence 999998861 34556679999999999999999 99999999999998842
Q ss_pred EEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccce
Q 043350 315 FIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMK 394 (1133)
Q Consensus 315 ~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~ 394 (1133)
++.+..+.+|...|.+++|+|++.+
T Consensus 171 ------------------------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~------- 195 (420)
T 3vl1_A 171 ------------------------------------------------GSNPRTLIGHRATVTDIAIIDRGRN------- 195 (420)
T ss_dssp ------------------------------------------------CCCCEEEECCSSCEEEEEEETTTTE-------
T ss_pred ------------------------------------------------CcCceEEcCCCCcEEEEEEcCCCCE-------
Confidence 3344566778899999999999999
Q ss_pred EEEEeeCCCCcccccccc---ccceee---ccCCceEEEEEecCCc---ccCCCCCEEEEEECCCC-eEEEEecCCeEEE
Q 043350 395 VKFVSSNKKEKPHGFLQR---SRNAIM---GAADAVRRVATRGAGA---FVDDTKRTEAMVLTADG-MIWSGCTNGLLVQ 464 (1133)
Q Consensus 395 v~lasgs~Dg~i~~~~~~---~~~~~~---~~~~~V~~v~~~p~g~---~~~h~~~V~sl~~spdg-~L~sgs~DG~I~v 464 (1133)
|++++.|++++.|+.+ ....+. .+...+..+++.+.+. ...+...+.+++|+|++ +|++|+.||.|++
T Consensus 196 --l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 273 (420)
T 3vl1_A 196 --VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITV 273 (420)
T ss_dssp --EEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEE
T ss_pred --EEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEE
Confidence 9999999999966543 333333 4567788888876544 34466788999999999 9999999999999
Q ss_pred EeC-CCCeeEEEec-CCcceeE--EecCCC-EEEEEecCCeEEEEeCCC--Ccceeeec-cccCeEEeeec-ccceeeec
Q 043350 465 WDG-NGNRVSDILH-HQCAVQC--FCTYGS-RMYVGYVSGYLQILDLDG--NLTASWIA-HSSPVLKLAVG-VDHIYSLA 535 (1133)
Q Consensus 465 Wd~-~g~~l~~~~~-h~~~V~~--fs~dg~-~Lasgs~DG~I~vwd~~g--~~l~~~~~-H~~~V~~l~fs-~~~L~S~s 535 (1133)
||+ .++.+..+.. |...|.+ |+|++. +|++|+.||.|++||+.. .++..+.+ |..+|.++.+. +++|++++
T Consensus 274 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~ 353 (420)
T 3vl1_A 274 HNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSG 353 (420)
T ss_dssp EETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEET
T ss_pred EECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEec
Confidence 999 5566666654 7888988 999998 999999999999999974 45778887 67889999887 88999999
Q ss_pred ccCCeeeccccCC
Q 043350 536 AHGGIRGWTFTSP 548 (1133)
Q Consensus 536 ~Dg~I~lW~l~s~ 548 (1133)
.||.|++|++..+
T Consensus 354 ~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 354 FDTSIKLDIISDP 366 (420)
T ss_dssp TTEEEEEEEECCT
T ss_pred CCccEEEEeccCC
Confidence 9999999998774
No 72
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.95 E-value=3.2e-26 Score=270.74 Aligned_cols=279 Identities=13% Similarity=0.147 Sum_probs=211.6
Q ss_pred eEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCC
Q 043350 215 TMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESI 293 (1133)
Q Consensus 215 V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~ 293 (1133)
..+|+|+++ ++||+|. |++|+|||+.++.. ..+..+.+|...|++|+|+|+|+ |++|+.||+|++||+.+.
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~------~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~ 179 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDI------LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ 179 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCE------EEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCE------EEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC
Confidence 568999975 5788775 89999999987332 34445668899999999999999 999999999999999875
Q ss_pred ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCC-CceeEEEecC
Q 043350 294 EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARS-KELLKVFNIE 372 (1133)
Q Consensus 294 ~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~t-g~~l~~~~~h 372 (1133)
.....+..+...+.+. . .++ .+++++ +.|+.+.+||... ...+..+.+|
T Consensus 180 ~~~~~~~~h~~~v~~~---------s-----------~~~--~~l~sg--------s~d~~i~~~d~~~~~~~~~~~~~h 229 (420)
T 4gga_A 180 KRLRNMTSHSARVGSL---------S-----------WNS--YILSSG--------SRSGHIHHHDVRVAEHHVATLSGH 229 (420)
T ss_dssp EEEEEECCCSSCEEEE---------E-----------EET--TEEEEE--------ETTSEEEEEETTSSSCEEEEEECC
T ss_pred cEEEEEeCCCCceEEE---------e-----------eCC--CEEEEE--------eCCCceeEeeecccceeeEEeccc
Confidence 3332232222221111 1 111 234444 7899999999885 4566789999
Q ss_pred CcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-
Q 043350 373 GHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG- 451 (1133)
Q Consensus 373 ~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg- 451 (1133)
...+..+.++|++.+ +++++.|+.++.|+........ ..+ .....|...|.+++++|++
T Consensus 230 ~~~~~~~~~~~~g~~---------l~s~~~D~~v~i~~~~~~~~~~---~~~--------~~~~~~~~~V~~~~~~p~~~ 289 (420)
T 4gga_A 230 SQEVCGLRWAPDGRH---------LASGGNDNLVNVWPSAPGEGGW---VPL--------QTFTQHQGAVKAVAWCPWQS 289 (420)
T ss_dssp SSCEEEEEECTTSSE---------EEEEETTSCEEEEESSCCSSCS---CCS--------EEECCCSSCEEEEEECTTCT
T ss_pred ccceeeeeecCCCCe---------eeeeeccccceEEeeccccccc---eee--------eeecccCCceeeeeeCCCcc
Confidence 999999999999999 9999999999755433211100 000 1134677788888888877
Q ss_pred -eEEE--EecCCeEEEEeC-CCCeeEEEecCCcceeE-EecCCCEEEEEe--cCCeEEEEeCC-CCcceeeeccccCeEE
Q 043350 452 -MIWS--GCTNGLLVQWDG-NGNRVSDILHHQCAVQC-FCTYGSRMYVGY--VSGYLQILDLD-GNLTASWIAHSSPVLK 523 (1133)
Q Consensus 452 -~L~s--gs~DG~I~vWd~-~g~~l~~~~~h~~~V~~-fs~dg~~Lasgs--~DG~I~vwd~~-g~~l~~~~~H~~~V~~ 523 (1133)
.+++ |+.|++|++||+ ++.++..+..|...+.. |+++++.|++++ .||.|+|||+. ++++.++.+|.+.|++
T Consensus 290 ~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~ 369 (420)
T 4gga_A 290 NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLS 369 (420)
T ss_dssp TEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred cEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEE
Confidence 5554 457999999999 66788888777655544 999999888765 79999999997 5789999999999999
Q ss_pred eeec--ccceeeecccCCeeeccccCCCCc
Q 043350 524 LAVG--VDHIYSLAAHGGIRGWTFTSPSPL 551 (1133)
Q Consensus 524 l~fs--~~~L~S~s~Dg~I~lW~l~s~~~l 551 (1133)
|+|+ +++|+|+|.|++|++|++...++.
T Consensus 370 l~~spdg~~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 370 LTMSPDGATVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp EEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred EEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence 9999 899999999999999999775554
No 73
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.95 E-value=2.7e-27 Score=268.94 Aligned_cols=254 Identities=12% Similarity=0.051 Sum_probs=191.0
Q ss_pred eeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeC--Cc-EEEEeCCC
Q 043350 207 YESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQ--GD-LWSGGEGG 283 (1133)
Q Consensus 207 ~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~--g~-L~Sgs~Dg 283 (1133)
+..+|..+|+|++|+|++++||+|+.|++|+|||+..+.. ..+..+.+|.++|++|+|+++ ++ |+|||.|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~------~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~ 81 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ------ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDR 81 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE------EEEEEEECCSSCEEEEEECCGGGSSCEEEEETTS
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc------EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCC
Confidence 4557889999999999999999999999999999975211 345678999999999999863 77 99999999
Q ss_pred cEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCC
Q 043350 284 VIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSK 363 (1133)
Q Consensus 284 tI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg 363 (1133)
+|++||+++. ..
T Consensus 82 ~v~iWd~~~~--------------------------------------------------------------------~~ 93 (316)
T 3bg1_A 82 KVIIWREENG--------------------------------------------------------------------TW 93 (316)
T ss_dssp CEEEECCSSS--------------------------------------------------------------------CC
T ss_pred EEEEEECCCC--------------------------------------------------------------------cc
Confidence 9999998531 01
Q ss_pred ceeEEEecCCcceeEEEeCCC--CCccccccceEEEEeeCCCCccccccccc------cceeeccCCceEEEEEecCCc-
Q 043350 364 ELLKVFNIEGHIENRVDTQSV--QDQPVEDEMKVKFVSSNKKEKPHGFLQRS------RNAIMGAADAVRRVATRGAGA- 434 (1133)
Q Consensus 364 ~~l~~~~~h~~~v~~l~~sp~--g~~~~e~e~~v~lasgs~Dg~i~~~~~~~------~~~~~~~~~~V~~v~~~p~g~- 434 (1133)
+.+..+.+|...|++++|+|+ +.+ |++|+.|++|+.|+.+. ...+.+|...+..++|+|++.
T Consensus 94 ~~~~~~~~h~~~V~~v~~~p~~~g~~---------lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 94 EKSHEHAGHDSSVNSVCWAPHDYGLI---------LACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp CEEEEECCCSSCCCEEEECCTTTCSC---------EEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred eEEEEccCCCCceEEEEECCCCCCcE---------EEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 223456678889999999998 778 99999999998555332 122345555566666665421
Q ss_pred --ccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCCC----CeeEEEecCCcceeE--EecCC----CEEEEEecCCeE
Q 043350 435 --FVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGNG----NRVSDILHHQCAVQC--FCTYG----SRMYVGYVSGYL 501 (1133)
Q Consensus 435 --~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g----~~l~~~~~h~~~V~~--fs~dg----~~Lasgs~DG~I 501 (1133)
+..+... ....++ +|++|+.|++|++||... +++..+.+|...|.+ |+|++ .+|++|+.||+|
T Consensus 165 ~~~~~~~~~----~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v 240 (316)
T 3bg1_A 165 GSLIDHPSG----QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV 240 (316)
T ss_dssp ------CCS----CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEE
T ss_pred ccccccccc----cCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeE
Confidence 0000000 001124 899999999999999953 367778899999998 88986 799999999999
Q ss_pred EEEeCCCC-----cceeeeccccCeEEeeec--ccceeeecccCCeeeccccC
Q 043350 502 QILDLDGN-----LTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 502 ~vwd~~g~-----~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s 547 (1133)
++||+... ....+.+|.+.|.+++|+ +++|++++.||+|++|+...
T Consensus 241 ~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 241 FIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 99998641 234567899999999999 88999999999999999653
No 74
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.95 E-value=1.3e-26 Score=269.66 Aligned_cols=287 Identities=11% Similarity=0.111 Sum_probs=221.6
Q ss_pred cCCCCCCCCCcccccCCCC-CEEEEecCCCeEEeccCCCCCCCCCCeeeec--cCCCccccccceEEEEE-eC-CCCeEE
Q 043350 97 PGPDAADDQQQHKPFQPMV-EFIGSGGGTGIFKVPSRAAVHPGRPPCLELR--PHPLKETQAGRFLRNIA-CT-DTQLWA 171 (1133)
Q Consensus 97 ~~~~~~~~~~~~~~~~p~g-~~lasgs~dg~irlW~~~~~~~g~~~~~~l~--~H~~~~~~~g~~V~~v~-s~-dg~lla 171 (1133)
.+|...+.. +.|+|++ ++|++|+.||.|++|+... +.. ...+. +|.. .|.+++ ++ ++.+++
T Consensus 70 ~~h~~~v~~---~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~-~~~~~~~~h~~-------~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 70 SPFDRRVTS---LEWHPTHPTTVAVGSKGGDIILWDYDV---QNK-TSFIQGMGPGD-------AITGMKFNQFNTNQLF 135 (383)
T ss_dssp CCCSSCEEE---EEECSSCTTEEEEEEBTSCEEEEETTS---TTC-EEEECCCSTTC-------BEEEEEEETTEEEEEE
T ss_pred cCCCCCEEE---EEECCCCCCEEEEEcCCCeEEEEeCCC---ccc-ceeeecCCcCC-------ceeEEEeCCCCCCEEE
Confidence 355555555 8899999 9999999999999999873 333 44444 6888 999999 88 677777
Q ss_pred --ecCCcEEEeeCCCCC-CcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCC
Q 043350 172 --GQECGVRFWNLEDSY-EPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDA 248 (1133)
Q Consensus 172 --s~Dg~VrvWdl~~~~-~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~ 248 (1133)
+.|+.|++||+.+.. ..+.. ...|...|.+++|+|++++|++|+.||.|++||++.
T Consensus 136 s~~~d~~i~iwd~~~~~~~~~~~----------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~----- 194 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGSVIQVFAK----------------TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG----- 194 (383)
T ss_dssp EEETTTEEEEEETTSCEEEEEEC----------------CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS-----
T ss_pred EEeCCCEEEEEECCCCceEEEec----------------cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC-----
Confidence 889999999998521 11111 123457899999999999999999999999999976
Q ss_pred CCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeec
Q 043350 249 NNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNG 326 (1133)
Q Consensus 249 ~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~ 326 (1133)
+.+..+.+|...|.+++|+|++. |++|+.|++|++||+++..
T Consensus 195 ----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-------------------------------- 238 (383)
T 3ei3_B 195 ----HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIK-------------------------------- 238 (383)
T ss_dssp ----CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCC--------------------------------
T ss_pred ----CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCC--------------------------------
Confidence 67778899999999999999997 9999999999999985310
Q ss_pred cccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCC-CCCccccccceEEEEeeCCCCc
Q 043350 327 ACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQS-VQDQPVEDEMKVKFVSSNKKEK 405 (1133)
Q Consensus 327 ~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp-~g~~~~e~e~~v~lasgs~Dg~ 405 (1133)
..+.++..+ .|...+.+++|+| ++.+ |++++.|+.
T Consensus 239 ----------------------------------~~~~~~~~~-~~~~~v~~~~~s~~~~~~---------l~~~~~d~~ 274 (383)
T 3ei3_B 239 ----------------------------------DKNSYIAEM-PHEKPVNAAYFNPTDSTK---------LLTTDQRNE 274 (383)
T ss_dssp ----------------------------------STTCEEEEE-ECSSCEEEEEECTTTSCE---------EEEEESSSE
T ss_pred ----------------------------------cccceEEEe-cCCCceEEEEEcCCCCCE---------EEEEcCCCc
Confidence 012333444 5778899999999 9999 999999999
Q ss_pred ccccccc---ccceeeccC-------CceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeC-CCCeeEE
Q 043350 406 PHGFLQR---SRNAIMGAA-------DAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDG-NGNRVSD 474 (1133)
Q Consensus 406 i~~~~~~---~~~~~~~~~-------~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~-~g~~l~~ 474 (1133)
|+.|+.+ ....+.+|. ..+. ..|+|+ ..+..++++|++.+ +|+.||.|++||+ +++++..
T Consensus 275 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~-------~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~ 345 (383)
T 3ei3_B 275 IRVYSSYDWSKPDQIIIHPHRQFQHLTPIK-ATWHPM-------YDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQ 345 (383)
T ss_dssp EEEEETTBTTSCSEEEECCBCCCTTSCCCC-CEECSS-------SSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEE
T ss_pred EEEEECCCCccccccccccccccccccceE-EeccCC-------CCceEEEecCCccc-ccCCCCeEEEEecCCCceeee
Confidence 9865533 223333322 2222 244432 35667889999944 9999999999999 6788899
Q ss_pred Eec--CCcceeE--EecCCCEEEEEecCCeEEEEeCCC
Q 043350 475 ILH--HQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 475 ~~~--h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g 508 (1133)
+.. |...+.+ |+|+|++|++|+ ||.|++||+++
T Consensus 346 l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 346 LRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred ecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 987 4556665 999999999997 99999999864
No 75
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.95 E-value=5.4e-26 Score=256.04 Aligned_cols=278 Identities=12% Similarity=0.121 Sum_probs=204.4
Q ss_pred eEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCC
Q 043350 215 TMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESI 293 (1133)
Q Consensus 215 V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~ 293 (1133)
..+|+||+++ +||+|. |++|+|||+.++.. .....+.+|...|++|+|+|+|+ |+||+.||+|++|++++.
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~------~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~ 99 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDI------LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ 99 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCE------EEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCE------EEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc
Confidence 4789999875 777764 89999999986322 23335567889999999999999 999999999999999874
Q ss_pred ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCC-ceeEEEecC
Q 043350 294 EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSK-ELLKVFNIE 372 (1133)
Q Consensus 294 ~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg-~~l~~~~~h 372 (1133)
.....+..+... ...+. ..+. .++++ +.++.+.+|+..++ ..+..+.+|
T Consensus 100 ~~~~~~~~h~~~---------~~~~~-----------~~~~--~l~s~--------~~~~~~~~~~~~~~~~~~~~~~~~ 149 (318)
T 4ggc_A 100 KRLRNMTSHSAR---------VGSLS-----------WNSY--ILSSG--------SRSGHIHHHDVRVAEHHVATLSGH 149 (318)
T ss_dssp EEEEEEECCSSC---------EEEEE-----------EETT--EEEEE--------ETTSEEEEEETTSSSCEEEEEECC
T ss_pred eeEEEecCccce---------EEEee-----------cCCC--EEEEE--------ecCCceEeeecCCCceeEEEEcCc
Confidence 322222211111 11110 1122 33444 67888888888855 566788999
Q ss_pred CcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-
Q 043350 373 GHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG- 451 (1133)
Q Consensus 373 ~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg- 451 (1133)
...+..+.+++++.+ +++++.|++|+.|+.+....... . . .....+...|.++.+++++
T Consensus 150 ~~~~~~~~~~~~~~~---------l~s~~~d~~i~iwd~~~~~~~~~---~---~-----~~~~~~~~~v~~~~~~~~~~ 209 (318)
T 4ggc_A 150 SQEVCGLRWAPDGRH---------LASGGNDNLVNVWPSAPGEGGWV---P---L-----QTFTQHQGAVKAVAWCPWQS 209 (318)
T ss_dssp SSCEEEEEECTTSSE---------EEEEETTSCEEEEESSCBTTBSC---C---S-----EEECCCCSCEEEEEECTTST
T ss_pred cCceEEEEEcCCCCE---------EEEEecCcceeEEECCCCccccc---c---e-----eeecccCCceEEEEecCCCC
Confidence 999999999999999 99999999998665432211000 0 0 0023456677788887776
Q ss_pred ---eEEEEecCCeEEEEeCCCCeeEEEecCCcceeE--EecCCCEEEEEe--cCCeEEEEeCC-CCcceeeeccccCeEE
Q 043350 452 ---MIWSGCTNGLLVQWDGNGNRVSDILHHQCAVQC--FCTYGSRMYVGY--VSGYLQILDLD-GNLTASWIAHSSPVLK 523 (1133)
Q Consensus 452 ---~L~sgs~DG~I~vWd~~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs--~DG~I~vwd~~-g~~l~~~~~H~~~V~~ 523 (1133)
.+++++.+++|++|+...........+...+.+ ++++++.+++++ .||.|++||+. ++++.++.+|.+.|++
T Consensus 210 ~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~ 289 (318)
T 4ggc_A 210 NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLS 289 (318)
T ss_dssp TEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred cEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEE
Confidence 335678899999999955444444445555655 999999887655 79999999997 6789999999999999
Q ss_pred eeec--ccceeeecccCCeeeccccCCCC
Q 043350 524 LAVG--VDHIYSLAAHGGIRGWTFTSPSP 550 (1133)
Q Consensus 524 l~fs--~~~L~S~s~Dg~I~lW~l~s~~~ 550 (1133)
|+|+ +++|+|+|.||+|++||+...+|
T Consensus 290 l~~spdg~~l~S~s~D~~v~iWd~~~~dP 318 (318)
T 4ggc_A 290 LTMSPDGATVASAAADETLRLWRCFELDP 318 (318)
T ss_dssp EEECTTSSCEEEEETTTEEEEECCSCCCC
T ss_pred EEEcCCCCEEEEEecCCeEEEEECCCCCC
Confidence 9999 88999999999999999876543
No 76
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.95 E-value=5.8e-27 Score=273.36 Aligned_cols=324 Identities=15% Similarity=0.131 Sum_probs=227.9
Q ss_pred ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCC
Q 043350 172 GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTLDDANN 250 (1133)
Q Consensus 172 s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~~ 250 (1133)
..++.+++|+++.... ..+..+|.++|.|++|+| ++++|++|+.||.|++|++.........
T Consensus 20 ~~~~~~~v~~~~~~~~-----------------~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 82 (408)
T 4a11_B 20 RAESTRRVLGLELNKD-----------------RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY 82 (408)
T ss_dssp HHHHHHHHHTEEECTT-----------------EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE
T ss_pred eccCcceeeccccCcc-----------------eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE
Confidence 4556677887654211 224556889999999999 9999999999999999999863320000
Q ss_pred Cccc-----ccccccCCCCeEEEEEee-CCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCcee
Q 043350 251 PFKE-----GLSWQAHRGPVLAMIFSS-QGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVT 323 (1133)
Q Consensus 251 ~~~~-----~~~l~gH~~~V~sl~fsp-~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~ 323 (1133)
.... .....+|...|++++|+| ++. |++++.||.|++||+.+......+.....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------------------- 143 (408)
T 4a11_B 83 TCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEET------------------- 143 (408)
T ss_dssp EECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSC-------------------
T ss_pred eccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCc-------------------
Confidence 0000 011246999999999999 566 99999999999999987432222211111
Q ss_pred eeccccCC-CCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCC-ccccccceEEEEeeC
Q 043350 324 VNGACSIS-STEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQD-QPVEDEMKVKFVSSN 401 (1133)
Q Consensus 324 v~~~~~~~-~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~-~~~e~e~~v~lasgs 401 (1133)
+..+...+ ..+..+++++ +.++.|++||+++++.+..+..|...|.+++|+|++. + +++|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---------l~~~~ 206 (408)
T 4a11_B 144 VYSHHMSPVSTKHCLVAVG--------TRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYI---------LATAS 206 (408)
T ss_dssp EEEEEECSSCSSCCEEEEE--------ESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTE---------EEEEE
T ss_pred eeeeEeecCCCCCcEEEEE--------cCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcE---------EEEEc
Confidence 01111111 2233345555 7899999999999999999999999999999999988 5 78999
Q ss_pred CCCccccccccccc----eeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEE
Q 043350 402 KKEKPHGFLQRSRN----AIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDI 475 (1133)
Q Consensus 402 ~Dg~i~~~~~~~~~----~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~ 475 (1133)
.|+.++.|+.+... .+..+..... ......+..|...|.+++|+|++ +|++++.||.|++||+ +++....+
T Consensus 207 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 283 (408)
T 4a11_B 207 ADSRVKLWDVRRASGCLITLDQHNGKKS---QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVN 283 (408)
T ss_dssp TTSCEEEEETTCSSCCSEECCTTTTCSC---CCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCC
T ss_pred CCCcEEEEECCCCCcccccccccccccc---eeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceec
Confidence 99999866543211 1111111000 00111246788899999999999 9999999999999999 45544433
Q ss_pred ecCC-----cc-eeE-EecCCCEEEEEecCCeEEEEeCC-CCcceeeeccccCeEEeeec--ccceeeecccCCeeeccc
Q 043350 476 LHHQ-----CA-VQC-FCTYGSRMYVGYVSGYLQILDLD-GNLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTF 545 (1133)
Q Consensus 476 ~~h~-----~~-V~~-fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l 545 (1133)
..+. .. ... ....+..+++++.|+.|++||+. ++++..+.+|.+.|++++|+ +++|++++.||.|++|++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 363 (408)
T 4a11_B 284 YGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVP 363 (408)
T ss_dssp CCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred cccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeC
Confidence 3211 11 111 33445677888899999999987 57888999999999999999 789999999999999999
Q ss_pred cCCCCc
Q 043350 546 TSPSPL 551 (1133)
Q Consensus 546 ~s~~~l 551 (1133)
....++
T Consensus 364 ~~~~~~ 369 (408)
T 4a11_B 364 SLYEPV 369 (408)
T ss_dssp CC----
T ss_pred CCCCcc
Confidence 876554
No 77
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.95 E-value=4e-27 Score=279.95 Aligned_cols=289 Identities=16% Similarity=0.159 Sum_probs=206.7
Q ss_pred CCCCCCCCCcccccCC-CCCEEEEecCCCeEEeccCCCCCCCC-CCeeeeccCCCccccccceEEEEE-eC-CCCeEE--
Q 043350 98 GPDAADDQQQHKPFQP-MVEFIGSGGGTGIFKVPSRAAVHPGR-PPCLELRPHPLKETQAGRFLRNIA-CT-DTQLWA-- 171 (1133)
Q Consensus 98 ~~~~~~~~~~~~~~~p-~g~~lasgs~dg~irlW~~~~~~~g~-~~~~~l~~H~~~~~~~g~~V~~v~-s~-dg~lla-- 171 (1133)
+|...+++ +.|+| ++.+||+|+.||.|+||+..+ +. .....+.+|.. .|++|+ +| ++.+|+
T Consensus 117 ~~~~~V~~---l~~~P~~~~~lasGs~dg~i~lWd~~~---~~~~~~~~~~gH~~-------~V~~l~f~p~~~~~l~s~ 183 (435)
T 4e54_B 117 PFDRRATS---LAWHPTHPSTVAVGSKGGDIMLWNFGI---KDKPTFIKGIGAGG-------SITGLKFNPLNTNQFYAS 183 (435)
T ss_dssp ECSSCEEE---EEECSSCTTCEEEEETTSCEEEECSSC---CSCCEEECCCSSSC-------CCCEEEECSSCTTEEEEE
T ss_pred CCCCCEEE---EEEeCCCCCEEEEEeCCCEEEEEECCC---CCceeEEEccCCCC-------CEEEEEEeCCCCCEEEEE
Confidence 34444444 78899 577999999999999999863 22 22455678988 999999 76 677777
Q ss_pred ecCCcEEEeeCCCCCC-cCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCC
Q 043350 172 GQECGVRFWNLEDSYE-PGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANN 250 (1133)
Q Consensus 172 s~Dg~VrvWdl~~~~~-~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~ 250 (1133)
+.|++|++||+++... .+.. ...+...+++++|+|++++|++|+.||+|++||+++
T Consensus 184 s~D~~v~iwd~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~------- 240 (435)
T 4e54_B 184 SMEGTTRLQDFKGNILRVFAS----------------SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG------- 240 (435)
T ss_dssp CSSSCEEEEETTSCEEEEEEC----------------CSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-------
T ss_pred eCCCEEEEeeccCCceeEEec----------------cCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-------
Confidence 8899999999976321 1111 112344688999999999999999999999999987
Q ss_pred CcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceeeEe---CCCCceEEEEeecceEEEccCceeee
Q 043350 251 PFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSLSL---KPEEKHMAALLVERSFIDLRAQVTVN 325 (1133)
Q Consensus 251 ~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l~~---~~~~~~l~s~~~d~s~~d~~~~~~v~ 325 (1133)
+++..+.+|...|++|+|+|++. |++|+.|++|++||++.......+ ..+.. .+.
T Consensus 241 --~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~------------------~v~ 300 (435)
T 4e54_B 241 --KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRH------------------PVN 300 (435)
T ss_dssp --CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSS------------------CEE
T ss_pred --ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccc------------------ccc
Confidence 66778899999999999999987 889999999999999863211111 11111 122
Q ss_pred ccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcc------eeEEEeCCCCCccccccceEEEEe
Q 043350 326 GACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHI------ENRVDTQSVQDQPVEDEMKVKFVS 399 (1133)
Q Consensus 326 ~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~------v~~l~~sp~g~~~~e~e~~v~las 399 (1133)
.++. +++...++++ +.|+.|++||+.+++....+..|... +....++|++.. ++
T Consensus 301 ~~~~--spdg~~l~s~--------~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~- 360 (435)
T 4e54_B 301 AACF--SPDGARLLTT--------DQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNL---------IV- 360 (435)
T ss_dssp ECCB--CTTSSEEEEE--------ESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSC---------EE-
T ss_pred ceeE--CCCCCeeEEE--------cCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCE---------EE-
Confidence 2222 2344455566 78999999999999888777665432 112334444333 32
Q ss_pred eCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC--eEEEEecCCeEEEEeC-CCCeeEEEe
Q 043350 400 SNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG--MIWSGCTNGLLVQWDG-NGNRVSDIL 476 (1133)
Q Consensus 400 gs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg--~L~sgs~DG~I~vWd~-~g~~l~~~~ 476 (1133)
+.+++++ .++++..++.|++||. +|+++..+.
T Consensus 361 ---------------------------------------------~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~ 395 (435)
T 4e54_B 361 ---------------------------------------------VGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY 395 (435)
T ss_dssp ---------------------------------------------EECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC
T ss_pred ---------------------------------------------EEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe
Confidence 2233444 3445556778999999 678887765
Q ss_pred -cCCcceeE---EecCCCEEEEEecCCeEEEEeCCC
Q 043350 477 -HHQCAVQC---FCTYGSRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 477 -~h~~~V~~---fs~dg~~Lasgs~DG~I~vwd~~g 508 (1133)
.|...|.+ |+|+|++|++|+ |++|+|||++.
T Consensus 396 ~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~ 430 (435)
T 4e54_B 396 DPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQE 430 (435)
T ss_dssp CSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred CCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCc
Confidence 57777765 899999999886 88999999873
No 78
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.2e-25 Score=258.16 Aligned_cols=286 Identities=11% Similarity=0.121 Sum_probs=229.9
Q ss_pred cCCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ec
Q 043350 97 PGPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQ 173 (1133)
Q Consensus 97 ~~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~ 173 (1133)
.+|..++.. +.|+|++++|++|+.||.|++|+... ++. +..+.+|.. .|.+++ ++++++++ +.
T Consensus 29 ~~h~~~v~~---~~~s~~~~~l~~~~~dg~i~vwd~~~---~~~-~~~~~~h~~-------~v~~~~~~~~~~~l~s~~~ 94 (369)
T 3zwl_B 29 TGHERPLTQ---VKYNKEGDLLFSCSKDSSASVWYSLN---GER-LGTLDGHTG-------TIWSIDVDCFTKYCVTGSA 94 (369)
T ss_dssp ECCSSCEEE---EEECTTSCEEEEEESSSCEEEEETTT---CCE-EEEECCCSS-------CEEEEEECTTSSEEEEEET
T ss_pred EEeeceEEE---EEEcCCCCEEEEEeCCCEEEEEeCCC---chh-hhhhhhcCC-------cEEEEEEcCCCCEEEEEeC
Confidence 367666666 88999999999999999999999873 444 888999998 999999 99998888 88
Q ss_pred CCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCC-----CeEEEEeCCCCCCCC
Q 043350 174 ECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKD-----GKIRSWKMDQTLDDA 248 (1133)
Q Consensus 174 Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~D-----g~V~vWd~~~~~~~~ 248 (1133)
|+.|++||+.+.... ... .+..+|.+++|+|++++|++++.+ |.|++|++.......
T Consensus 95 dg~i~iwd~~~~~~~-----------------~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~ 156 (369)
T 3zwl_B 95 DYSIKLWDVSNGQCV-----------------ATW-KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATH 156 (369)
T ss_dssp TTEEEEEETTTCCEE-----------------EEE-ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTC
T ss_pred CCeEEEEECCCCcEE-----------------EEe-ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccce
Confidence 999999999764221 112 267789999999999999999999 999999987532100
Q ss_pred C---CCcccccccccCCC--CeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCce
Q 043350 249 N---NPFKEGLSWQAHRG--PVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQV 322 (1133)
Q Consensus 249 ~---~~~~~~~~l~gH~~--~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~ 322 (1133)
. ........+..|.+ .|.+++|+|+++ |++++.||.|++||+.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------------------------- 207 (369)
T 3zwl_B 157 ELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN----------------------------- 207 (369)
T ss_dssp CEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT-----------------------------
T ss_pred eecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC-----------------------------
Confidence 0 00123445566766 999999999999 999999999999988421
Q ss_pred eeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCC
Q 043350 323 TVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNK 402 (1133)
Q Consensus 323 ~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~ 402 (1133)
++.+..+..|...+.+++|+|++.+ |++++.
T Consensus 208 ----------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~---------l~~~~~ 238 (369)
T 3zwl_B 208 ----------------------------------------YEYVDSIDLHEKSISDMQFSPDLTY---------FITSSR 238 (369)
T ss_dssp ----------------------------------------TEEEEEEECCSSCEEEEEECTTSSE---------EEEEET
T ss_pred ----------------------------------------cEeEEEEecCCCceeEEEECCCCCE---------EEEecC
Confidence 2344556667888999999999999 999999
Q ss_pred CCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCC--------------eEEEEeC
Q 043350 403 KEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNG--------------LLVQWDG 467 (1133)
Q Consensus 403 Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG--------------~I~vWd~ 467 (1133)
|+.|+.|+.+.... +..+ .+...+.+++++|++ .+++++.++ .+++||.
T Consensus 239 d~~i~v~d~~~~~~-------~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 302 (369)
T 3zwl_B 239 DTNSFLVDVSTLQV-------LKKY---------ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHK 302 (369)
T ss_dssp TSEEEEEETTTCCE-------EEEE---------ECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEET
T ss_pred CceEEEEECCCCce-------eeee---------cCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEec
Confidence 99998665442221 1111 145678889999999 999999888 8999999
Q ss_pred -CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCC
Q 043350 468 -NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 468 -~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g 508 (1133)
.++.+..+..|...|.+ |+|++++|++|+.||.|++|+++.
T Consensus 303 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 303 IFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp TTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred CCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 67899999999999998 999999999999999999999874
No 79
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.95 E-value=1.5e-25 Score=263.25 Aligned_cols=269 Identities=15% Similarity=0.179 Sum_probs=208.4
Q ss_pred cCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeecc-CCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCC
Q 043350 111 FQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRP-HPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSY 186 (1133)
Q Consensus 111 ~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~-H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~ 186 (1133)
+++++..+++++.||.|++|+..+ ++. ...+.. |.. .|.+++ ++++.+|+ +.||.|++||+.+..
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~---~~~-~~~~~~~~~~-------~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 167 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADS---GSV-SALAETDEST-------YVASVKWSHDGSFLSVGLGNGLVDIYDVESQT 167 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTT---CCE-EEEEECCTTC-------CEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred EeecCCCEEEEECCCeEEEeeCCC---CcE-eEeeecCCCC-------CEEEEEECCCCCEEEEECCCCeEEEEECcCCe
Confidence 455567789999999999999874 444 444444 666 899999 99999888 789999999987632
Q ss_pred CcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeE
Q 043350 187 EPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVL 266 (1133)
Q Consensus 187 ~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~ 266 (1133)
. ......|..+|.+++|+ +++|++|+.||.|++||+... ......+.+|.+.|.
T Consensus 168 ~-----------------~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~~v~ 221 (401)
T 4aez_A 168 K-----------------LRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIA-------NHQIGTLQGHSSEVC 221 (401)
T ss_dssp E-----------------EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS-------SCEEEEEECCSSCEE
T ss_pred E-----------------EEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccC-------cceeeEEcCCCCCee
Confidence 1 12345788899999994 679999999999999999841 145667889999999
Q ss_pred EEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCce
Q 043350 267 AMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARA 345 (1133)
Q Consensus 267 sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i 345 (1133)
+++|+|++. |++|+.||.|++||+.+
T Consensus 222 ~~~~~~~~~~l~s~~~d~~v~iwd~~~----------------------------------------------------- 248 (401)
T 4aez_A 222 GLAWRSDGLQLASGGNDNVVQIWDARS----------------------------------------------------- 248 (401)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTC-----------------------------------------------------
T ss_pred EEEEcCCCCEEEEEeCCCeEEEccCCC-----------------------------------------------------
Confidence 999999999 99999999999999842
Q ss_pred EEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceE
Q 043350 346 RVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVR 425 (1133)
Q Consensus 346 ~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~ 425 (1133)
++.+..+..|...|.+++|+|++..
T Consensus 249 -----------------~~~~~~~~~~~~~v~~~~~~p~~~~-------------------------------------- 273 (401)
T 4aez_A 249 -----------------SIPKFTKTNHNAAVKAVAWCPWQSN-------------------------------------- 273 (401)
T ss_dssp -----------------SSEEEEECCCSSCCCEEEECTTSTT--------------------------------------
T ss_pred -----------------CCccEEecCCcceEEEEEECCCCCC--------------------------------------
Confidence 2223334445555555666554433
Q ss_pred EEEEecCCcccCCCCCEEEEEECCCCeEEEEe--cCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEE--EecC
Q 043350 426 RVATRGAGAFVDDTKRTEAMVLTADGMIWSGC--TNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYV--GYVS 498 (1133)
Q Consensus 426 ~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs--~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Las--gs~D 498 (1133)
.+++|+ .||.|++||+ +++++..+. +...|.+ |+|++++|++ |+.|
T Consensus 274 --------------------------ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d 326 (401)
T 4aez_A 274 --------------------------LLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPD 326 (401)
T ss_dssp --------------------------EEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTT
T ss_pred --------------------------EEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCC
Confidence 345544 7999999999 667777776 4566777 9999999999 5589
Q ss_pred CeEEEEeCCCC---cceeeeccccCeEEeeec--ccceeeecccCCeeeccccCCCCc
Q 043350 499 GYLQILDLDGN---LTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTSPSPL 551 (1133)
Q Consensus 499 G~I~vwd~~g~---~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s~~~l 551 (1133)
|.|++||+... ....+.+|...|.+++|+ +.+|++++.||.|++|++.....+
T Consensus 327 g~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 327 NNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp CEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred CcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 99999999752 344577999999999999 889999999999999999876544
No 80
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.95 E-value=1.1e-26 Score=269.54 Aligned_cols=293 Identities=10% Similarity=0.070 Sum_probs=208.6
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCC-CCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCC
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGR-PPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLED 184 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~-~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~ 184 (1133)
+.|+|+|++|++|+.||.|++|+..+ +. .....+.+|.. .|.+++ ++++++|+ +.|++|++||+.+
T Consensus 17 ~~~s~~g~~l~~~~~d~~i~iw~~~~---~~~~~~~~~~~h~~-------~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 17 HAFNSQRTEFVTTTATNQVELYEQDG---NGWKHARTFSDHDK-------IVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp CEECSSSSEEECCCSSSCBCEEEEET---TEEEECCCBCCCSS-------CEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EEECCCCCEEEEecCCCEEEEEEccC---CceEEEEEEecCCc-------eEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 88999999999999999999999873 31 33677889988 999999 99998888 8899999999987
Q ss_pred CCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCccccccccc-CCC
Q 043350 185 SYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQA-HRG 263 (1133)
Q Consensus 185 ~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~g-H~~ 263 (1133)
..... .......|..+|.|++|+|++++|++|+.|++|++||++.. ..+.....+.+ |..
T Consensus 87 ~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 87 DGTWK--------------QTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQE-----NDWWVSKHLKRPLRS 147 (377)
T ss_dssp --CCC--------------CEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC----------CCCCEEECSSCCS
T ss_pred CCcee--------------eeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCc-----ccceeeeEeecccCC
Confidence 43000 02234568889999999999999999999999999999862 11234566777 999
Q ss_pred CeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecC
Q 043350 264 PVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDH 342 (1133)
Q Consensus 264 ~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d 342 (1133)
.|++++|+|+++ |++|+.|++|++||+...... ..+.
T Consensus 148 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~---------------------------------------- 185 (377)
T 3dwl_C 148 TILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVD--AKPE---------------------------------------- 185 (377)
T ss_dssp CEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC---CCC----------------------------------------
T ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccC--CCcc----------------------------------------
Confidence 999999999999 999999999999998642100 0000
Q ss_pred CceEEEecCCCceeEeec--CCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeecc
Q 043350 343 ARARVWCAQPLSFSLWDA--RSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGA 420 (1133)
Q Consensus 343 ~~i~vwss~d~~I~lWD~--~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~ 420 (1133)
...|.. ..++++..+ .|...|++++|+|++.+ |++++.|++|+.|+.+....
T Consensus 186 ------------~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~---------l~~~~~d~~i~iwd~~~~~~---- 239 (377)
T 3dwl_C 186 ------------ASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNA---------LAYAGHDSSVTIAYPSAPEQ---- 239 (377)
T ss_dssp ------------SCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSC---------EEEEETTTEEC-CEECSTTS----
T ss_pred ------------ccccccccchhhhhhcc-cCCceEEEEEECCCCCE---------EEEEeCCCcEEEEECCCCCC----
Confidence 001111 245566667 88889999999999999 99999999998665432211
Q ss_pred CCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCC-CC--ee------------------------
Q 043350 421 ADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGN-GN--RV------------------------ 472 (1133)
Q Consensus 421 ~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~-g~--~l------------------------ 472 (1133)
.. .. -..+.+|...|.+++|+|++ +|++|+.|+.+ +|+.. +. ..
T Consensus 240 --~~-~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (377)
T 3dwl_C 240 --PP-RA----LITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREE 311 (377)
T ss_dssp --CE-EE----CCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC
T ss_pred --cc-ee----eEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccc
Confidence 00 00 01245677788889999999 88888776666 66553 11 00
Q ss_pred ----------EEE----------------ecCCcceeE---EecCCC---EEEEEecCCeEEEEeC
Q 043350 473 ----------SDI----------------LHHQCAVQC---FCTYGS---RMYVGYVSGYLQILDL 506 (1133)
Q Consensus 473 ----------~~~----------------~~h~~~V~~---fs~dg~---~Lasgs~DG~I~vwd~ 506 (1133)
..+ ..|...|++ +..++. .|++|+.||+|++||+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 312 EGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 011 128889998 333344 6999999999999985
No 81
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.95 E-value=2e-25 Score=265.79 Aligned_cols=316 Identities=17% Similarity=0.223 Sum_probs=236.7
Q ss_pred ccCCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEEeCCCCeEE-ecC
Q 043350 96 CPGPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIACTDTQLWA-GQE 174 (1133)
Q Consensus 96 ~~~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~s~dg~lla-s~D 174 (1133)
..+|...+.. .+.++|++|++|+.||+|++|+..+ ++. +..+.+|.. .|++++..+..+++ +.|
T Consensus 114 l~~h~~~v~~----~~~~~g~~l~sg~~dg~i~vwd~~~---~~~-~~~~~~h~~-------~v~~~~~~~~~l~s~~~d 178 (445)
T 2ovr_B 114 LKGHDDHVIT----CLQFCGNRIVSGSDDNTLKVWSAVT---GKC-LRTLVGHTG-------GVWSSQMRDNIIISGSTD 178 (445)
T ss_dssp EECSTTSCEE----EEEEETTEEEEEETTSCEEEEETTT---CCE-EEECCCCSS-------CEEEEEEETTEEEEEETT
T ss_pred ecccCCCcEE----EEEEcCCEEEEEECCCcEEEEECCC---CcE-EEEEcCCCC-------CEEEEEecCCEEEEEeCC
Confidence 3466554321 3567899999999999999999874 555 888999998 89999833333334 899
Q ss_pred CcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCccc
Q 043350 175 CGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKE 254 (1133)
Q Consensus 175 g~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~ 254 (1133)
++|++||+.+... ......|..+|.|++|+ ++.|++|+.||+|++||+..+ +.
T Consensus 179 g~i~vwd~~~~~~-----------------~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~--------~~ 231 (445)
T 2ovr_B 179 RTLKVWNAETGEC-----------------IHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG--------QC 231 (445)
T ss_dssp SCEEEEETTTTEE-----------------EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC--------CE
T ss_pred CeEEEEECCcCcE-----------------EEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC--------cE
Confidence 9999999976422 12345788899999996 578999999999999999861 45
Q ss_pred ccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCC
Q 043350 255 GLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISST 333 (1133)
Q Consensus 255 ~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~ 333 (1133)
+..+.+|...|.+++| ++. |++|+.||.|++||+++......+...... +..+. .
T Consensus 232 ~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---------v~~~~---------~---- 287 (445)
T 2ovr_B 232 LHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR---------VYSLQ---------F---- 287 (445)
T ss_dssp EEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSC---------EEEEE---------E----
T ss_pred EEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCc---------eEEEE---------E----
Confidence 6678899999999999 677 999999999999998764322222211111 11111 0
Q ss_pred CeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccc
Q 043350 334 EIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRS 413 (1133)
Q Consensus 334 ~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~ 413 (1133)
+...++++ +.|+.|++||+++++++..+.+|...+.++.++ +.+ +++|+.|+.|+.|+.+.
T Consensus 288 ~~~~l~~~--------~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~---------l~~~~~dg~i~vwd~~~ 348 (445)
T 2ovr_B 288 DGIHVVSG--------SLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNI---------LVSGNADSTVKIWDIKT 348 (445)
T ss_dssp CSSEEEEE--------ETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTE---------EEEEETTSCEEEEETTT
T ss_pred CCCEEEEE--------eCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCE---------EEEEeCCCeEEEEECCC
Confidence 11223334 789999999999999999999999988888774 557 99999999998665432
Q ss_pred cceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeC-CCCeeEEE-----ecCCcceeE--E
Q 043350 414 RNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDG-NGNRVSDI-----LHHQCAVQC--F 485 (1133)
Q Consensus 414 ~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~-~g~~l~~~-----~~h~~~V~~--f 485 (1133)
... +..+ . ....|...|.++++++ .+|++|+.||.|++||+ +++.+..+ ..|...|++ |
T Consensus 349 ~~~-------~~~~--~---~~~~~~~~v~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 415 (445)
T 2ovr_B 349 GQC-------LQTL--Q---GPNKHQSAVTCLQFNK-NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA 415 (445)
T ss_dssp CCE-------EEEE--C---STTSCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEE
T ss_pred CcE-------EEEE--c---cCCCCCCCEEEEEECC-CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEe
Confidence 211 1111 1 0124677888888852 39999999999999999 67888887 367888988 9
Q ss_pred ecCCCEEEEEecCCe----EEEEeCCCC
Q 043350 486 CTYGSRMYVGYVSGY----LQILDLDGN 509 (1133)
Q Consensus 486 s~dg~~Lasgs~DG~----I~vwd~~g~ 509 (1133)
+|++.+|++|+.||+ |.|||.+.+
T Consensus 416 s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 416 SNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp CSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred cCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 999999999999998 999998754
No 82
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.95 E-value=1.7e-25 Score=251.58 Aligned_cols=250 Identities=8% Similarity=0.081 Sum_probs=190.2
Q ss_pred eeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEE
Q 043350 142 CLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCL 218 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~l 218 (1133)
+..+.+|.. .|++++ +++|++|+ +.|++|+|||+.+..... ...+.+|..+|.++
T Consensus 2 ~~~~~~h~~-------~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~---------------~~~l~gH~~~V~~v 59 (297)
T 2pm7_B 2 VVIANAHNE-------MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKL---------------IDTLTGHEGPVWRV 59 (297)
T ss_dssp CEECCSCSS-------CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCC---------------CEEECCCSSCEEEE
T ss_pred ceeccCCcC-------ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEE---------------EEEEccccCCeEEE
Confidence 356788988 999999 99999999 889999999987521110 23456788999999
Q ss_pred EEeC--CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeC--Cc-EEEEeCCCcEEEEeCCCC
Q 043350 219 MVDC--GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQ--GD-LWSGGEGGVIKIWPWESI 293 (1133)
Q Consensus 219 a~sp--d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~--g~-L~Sgs~DgtI~iWdl~~~ 293 (1133)
+|++ ++++|+||+.||+|++||+..+.. ..+..+.+|...|++++|+|+ |. |++|+.|++|++||++..
T Consensus 60 ~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~------~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~ 133 (297)
T 2pm7_B 60 DWAHPKFGTILASCSYDGKVMIWKEENGRW------SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN 133 (297)
T ss_dssp EECCGGGCSEEEEEETTTEEEEEEBSSSCB------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred EecCCCcCCEEEEEcCCCEEEEEEcCCCce------EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC
Confidence 9986 489999999999999999986221 345567889999999999998 77 999999999999998531
Q ss_pred ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCC
Q 043350 294 EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEG 373 (1133)
Q Consensus 294 ~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~ 373 (1133)
.. .....+.+|.
T Consensus 134 ~~--------------------------------------------------------------------~~~~~~~~h~ 145 (297)
T 2pm7_B 134 GT--------------------------------------------------------------------TSPIIIDAHA 145 (297)
T ss_dssp SC--------------------------------------------------------------------BCCEEEECCS
T ss_pred Cc--------------------------------------------------------------------eeeeeeeccc
Confidence 00 0012344566
Q ss_pred cceeEEEeCCC-------------CCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCC
Q 043350 374 HIENRVDTQSV-------------QDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTK 440 (1133)
Q Consensus 374 ~~v~~l~~sp~-------------g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~ 440 (1133)
..|.+++|+|+ +.+ |++|+.|++|+.|+.+... ....+.. .+.+|..
T Consensus 146 ~~v~~~~~~p~~~~~~~~~~~~~~~~~---------l~sgs~D~~v~lwd~~~~~-------~~~~~~~----~l~~H~~ 205 (297)
T 2pm7_B 146 IGVNSASWAPATIEEDGEHNGTKESRK---------FVTGGADNLVKIWKYNSDA-------QTYVLES----TLEGHSD 205 (297)
T ss_dssp SCEEEEEECCCC------------CCE---------EEEEETTSCEEEEEEETTT-------TEEEEEE----EECCCSS
T ss_pred CccceEeecCCcccccccCCCCCCcce---------EEEEcCCCcEEEEEEcCCC-------ceEEEEE----EecCCCC
Confidence 67777777775 345 9999999999866543211 0011111 1457888
Q ss_pred CEEEEEECCC---C-eEEEEecCCeEEEEeCCC-C---eeEEE--ecCCcceeE--EecCCCEEEEEecCCeEEEEeCC
Q 043350 441 RTEAMVLTAD---G-MIWSGCTNGLLVQWDGNG-N---RVSDI--LHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 441 ~V~sl~~spd---g-~L~sgs~DG~I~vWd~~g-~---~l~~~--~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~ 507 (1133)
.|.+++|+|+ + +|++|+.||+|++||.+. . ....+ ..|...|.+ |+|+|++||+|+.||+|+||+..
T Consensus 206 ~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 206 WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 8899999987 4 899999999999999843 1 12233 457788887 99999999999999999999975
No 83
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.95 E-value=5e-26 Score=287.13 Aligned_cols=281 Identities=14% Similarity=0.204 Sum_probs=208.1
Q ss_pred eeccCCCCeEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCc
Q 043350 207 YESANTSPTMCLMVDCG-NRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGV 284 (1133)
Q Consensus 207 ~~~~h~s~V~~la~spd-~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~Dgt 284 (1133)
.+.+|...|+|++|+|+ +++|+||+.|++|++|++..... ........+.+|...|++++|+|+|+ |+||+.||+
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~---~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDK---AYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTT---CSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCc---ccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 45689999999999985 57999999999999999975221 11123457889999999999999999 999999999
Q ss_pred EEEEeCCCCcee--eEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCC
Q 043350 285 IKIWPWESIEKS--LSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARS 362 (1133)
Q Consensus 285 I~iWdl~~~~~~--l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~t 362 (1133)
|++||+.+.... +..|..... .++..+++ ..++++ +.|++|++||+..
T Consensus 454 v~vwd~~~~~~~~~~~~h~~~v~--------------------~~~~s~~~--~~l~s~--------s~D~~i~iwd~~~ 503 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVGHTKDVL--------------------SVAFSLDN--RQIVSA--------SRDRTIKLWNTLG 503 (694)
T ss_dssp EEEEETTTTEEEEEEECCSSCEE--------------------EEEECTTS--SCEEEE--------ETTSCEEEECTTS
T ss_pred EEEEECCCCcceeEEeCCCCCEE--------------------EEEEeCCC--CEEEEE--------eCCCEEEEEECCC
Confidence 999999874322 222222222 11111333 334444 7788899998765
Q ss_pred CceeEEE---ecCCcceeEEEeCCCC--CccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccC
Q 043350 363 KELLKVF---NIEGHIENRVDTQSVQ--DQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVD 437 (1133)
Q Consensus 363 g~~l~~~---~~h~~~v~~l~~sp~g--~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~ 437 (1133)
....... .+|...|.+++|+|++ .. +++|+.|++|+.|+.+..... ..+.+
T Consensus 504 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~---------l~s~s~d~~v~vwd~~~~~~~---------------~~~~~ 559 (694)
T 3dm0_A 504 ECKYTISEGGEGHRDWVSCVRFSPNTLQPT---------IVSASWDKTVKVWNLSNCKLR---------------STLAG 559 (694)
T ss_dssp CEEEEECSSTTSCSSCEEEEEECSCSSSCE---------EEEEETTSCEEEEETTTCCEE---------------EEECC
T ss_pred CcceeeccCCCCCCCcEEEEEEeCCCCcce---------EEEEeCCCeEEEEECCCCcEE---------------EEEcC
Confidence 4433322 3577789999999986 46 999999999986664422110 11457
Q ss_pred CCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCC-Ccce
Q 043350 438 DTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG-NLTA 512 (1133)
Q Consensus 438 h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g-~~l~ 512 (1133)
|...|.+++++|++ +|++|+.||+|++||+ +++++..+..+ ..|.+ |+|++.+|++++ |+.|+|||++. +++.
T Consensus 560 h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~ 637 (694)
T 3dm0_A 560 HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVE 637 (694)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS-SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC-CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChh
Confidence 88889999999999 9999999999999999 66777766554 45666 999998887765 56799999975 3444
Q ss_pred eeecc-------------------ccCeEEeeec--ccceeeecccCCeeecccc
Q 043350 513 SWIAH-------------------SSPVLKLAVG--VDHIYSLAAHGGIRGWTFT 546 (1133)
Q Consensus 513 ~~~~H-------------------~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~ 546 (1133)
.+..| ...|++++|+ +++|+|++.||+|++|++.
T Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 638 DLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred hhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 44322 1247889999 8999999999999999975
No 84
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.95 E-value=5.3e-26 Score=262.16 Aligned_cols=297 Identities=12% Similarity=0.060 Sum_probs=224.4
Q ss_pred CCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCC-CCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecC
Q 043350 99 PDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGR-PPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQE 174 (1133)
Q Consensus 99 ~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~-~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~D 174 (1133)
|..++.. +.|+|++++|++|+.||.|++|+... ++ ..+..+.+|.. .|.+++ ++++.+++ +.|
T Consensus 7 ~~~~i~~---~~~s~~~~~l~~~~~d~~v~i~~~~~---~~~~~~~~~~~h~~-------~v~~~~~~~~~~~l~~~~~d 73 (372)
T 1k8k_C 7 LVEPISC---HAWNKDRTQIAICPNNHEVHIYEKSG---NKWVQVHELKEHNG-------QVTGVDWAPDSNRIVTCGTD 73 (372)
T ss_dssp CSSCCCE---EEECTTSSEEEEECSSSEEEEEEEET---TEEEEEEEEECCSS-------CEEEEEEETTTTEEEEEETT
T ss_pred cCCCeEE---EEECCCCCEEEEEeCCCEEEEEeCCC---CcEEeeeeecCCCC-------cccEEEEeCCCCEEEEEcCC
Confidence 4444444 78899999999999999999999873 32 03778889988 999999 99999888 889
Q ss_pred CcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCccc
Q 043350 175 CGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKE 254 (1133)
Q Consensus 175 g~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~ 254 (1133)
+.|++||+....... ......|..+|.+++|+|++++|++|+.||.|++||+.... ....
T Consensus 74 g~i~vwd~~~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-----~~~~ 133 (372)
T 1k8k_C 74 RNAYVWTLKGRTWKP---------------TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN-----DWWV 133 (372)
T ss_dssp SCEEEEEEETTEEEE---------------EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTT-----TEEE
T ss_pred CeEEEEECCCCeeee---------------eEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCC-----ccee
Confidence 999999986532100 12234577899999999999999999999999999998621 1111
Q ss_pred c-cccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCC
Q 043350 255 G-LSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISS 332 (1133)
Q Consensus 255 ~-~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~ 332 (1133)
. ....+|...|++++|+|+++ |++|+.||.|++||+...... ..
T Consensus 134 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~------~~---------------------------- 179 (372)
T 1k8k_C 134 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVE------ER---------------------------- 179 (372)
T ss_dssp EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTS------CC----------------------------
T ss_pred eeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccc------cc----------------------------
Confidence 2 23467899999999999999 999999999999998642100 00
Q ss_pred CCeEEEEecCCceEEEecCCCceeEee--cCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccc
Q 043350 333 TEIKCMLSDHARARVWCAQPLSFSLWD--ARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFL 410 (1133)
Q Consensus 333 ~~~~~l~S~d~~i~vwss~d~~I~lWD--~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~ 410 (1133)
.....|. ..+++++..+..|...+.+++|+|++.+ |++++.|+.|+.|+
T Consensus 180 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---------l~~~~~d~~i~i~d 230 (372)
T 1k8k_C 180 --------------------PAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR---------VAWVSHDSTVCLAD 230 (372)
T ss_dssp --------------------CCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSE---------EEEEETTTEEEEEE
T ss_pred --------------------ccccccccccchhhheEecCCCCCeEEEEEECCCCCE---------EEEEeCCCEEEEEE
Confidence 0000111 2467778888889999999999999999 99999999998665
Q ss_pred ccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCCC--C---ee------------
Q 043350 411 QRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGNG--N---RV------------ 472 (1133)
Q Consensus 411 ~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g--~---~l------------ 472 (1133)
.+.... +.. +..|...|.+++|+|++ +|++| .||.|++|++.. . ++
T Consensus 231 ~~~~~~-------~~~--------~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (372)
T 1k8k_C 231 ADKKMA-------VAT--------LASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQR 294 (372)
T ss_dssp GGGTTE-------EEE--------EECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC------
T ss_pred CCCCce-------eEE--------EccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhh
Confidence 442221 111 23566778889999999 66665 999999999843 1 10
Q ss_pred ------------------------EEE-ecCCcceeE--Ee-cCC---CEEEEEecCCeEEEEeCC
Q 043350 473 ------------------------SDI-LHHQCAVQC--FC-TYG---SRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 473 ------------------------~~~-~~h~~~V~~--fs-~dg---~~Lasgs~DG~I~vwd~~ 507 (1133)
..+ .+|...|++ |. ++| .+|++|+.||+|++||+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 295 GLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp --CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred hcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEec
Confidence 223 379999998 34 677 999999999999999986
No 85
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.1e-25 Score=250.28 Aligned_cols=274 Identities=15% Similarity=0.166 Sum_probs=206.2
Q ss_pred ccCCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--e
Q 043350 96 CPGPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--G 172 (1133)
Q Consensus 96 ~~~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s 172 (1133)
..+|...+.. +.| |++++|++|+.||.|++|+.. .......+..|.. .|.+++ ++++.+++ +
T Consensus 14 l~~h~~~v~~---~~~-~~~~~l~s~~~dg~v~vw~~~----~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~ 78 (313)
T 3odt_A 14 LKGHDQDVRD---VVA-VDDSKVASVSRDGTVRLWSKD----DQWLGTVVYTGQG-------FLNSVCYDSEKELLLFGG 78 (313)
T ss_dssp ECCCSSCEEE---EEE-EETTEEEEEETTSEEEEEEES----SSEEEEEEEECSS-------CEEEEEEETTTTEEEEEE
T ss_pred hhCCCCCcEE---EEe-cCCCEEEEEEcCCcEEEEECC----CCEEEEEeecCCc-------cEEEEEECCCCCEEEEec
Confidence 3466666655 778 999999999999999999987 3333677888888 999999 99999888 8
Q ss_pred cCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCc
Q 043350 173 QECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPF 252 (1133)
Q Consensus 173 ~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~ 252 (1133)
.|+.|++|++....... .......|..+|.+++| ++++|++|+.||.|++|| ..
T Consensus 79 ~dg~i~~~~~~~~~~~~--------------~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d-~~--------- 132 (313)
T 3odt_A 79 KDTMINGVPLFATSGED--------------PLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK-EG--------- 132 (313)
T ss_dssp TTSCEEEEETTCCTTSC--------------C-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE-TT---------
T ss_pred CCCeEEEEEeeecCCCC--------------cccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc-CC---------
Confidence 89999999987632110 02245678889999999 578999999999999999 33
Q ss_pred ccccccccCCCCeEEEEEee-CCc-EEEEeCCCcEEEEeCCCCceeeEe-CCCCceEEEEeecceEEEccCceeeecccc
Q 043350 253 KEGLSWQAHRGPVLAMIFSS-QGD-LWSGGEGGVIKIWPWESIEKSLSL-KPEEKHMAALLVERSFIDLRAQVTVNGACS 329 (1133)
Q Consensus 253 ~~~~~l~gH~~~V~sl~fsp-~g~-L~Sgs~DgtI~iWdl~~~~~~l~~-~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~ 329 (1133)
.....+..|...|.+++|.| +++ |++++.||.|++||.......+.. +..... .+..
T Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~--------------------~~~~ 192 (313)
T 3odt_A 133 SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVR--------------------HLAV 192 (313)
T ss_dssp EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEE--------------------EEEE
T ss_pred cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEE--------------------EEEE
Confidence 56678889999999999999 777 999999999999995543333222 111111 1111
Q ss_pred CCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccc
Q 043350 330 ISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGF 409 (1133)
Q Consensus 330 ~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~ 409 (1133)
.+ +.. ++++ +.|+.|++||+++++++..+..|...+++++|+|
T Consensus 193 ~~--~~~-~~~~--------~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-------------------------- 235 (313)
T 3odt_A 193 VD--DGH-FISC--------SNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP-------------------------- 235 (313)
T ss_dssp EE--TTE-EEEE--------ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT--------------------------
T ss_pred cC--CCe-EEEc--------cCCCeEEEEECCchhhhhhhhcCCceEEEEEEec--------------------------
Confidence 11 222 3444 7899999999998887776665555555554444
Q ss_pred cccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--Ee
Q 043350 410 LQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FC 486 (1133)
Q Consensus 410 ~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs 486 (1133)
++.|++++.||.|++||+ +++++..+..|...|.+ |+
T Consensus 236 ----------------------------------------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~ 275 (313)
T 3odt_A 236 ----------------------------------------NGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCM 275 (313)
T ss_dssp ----------------------------------------TSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEEC
T ss_pred ----------------------------------------CCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEc
Confidence 444677888889999998 66888888888888887 88
Q ss_pred cCCCEEEEEecCCeEEEEeCCC
Q 043350 487 TYGSRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 487 ~dg~~Lasgs~DG~I~vwd~~g 508 (1133)
|+++ +++++.||.|++||++.
T Consensus 276 ~~~~-~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 276 SNGD-IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp TTSC-EEEEETTSCEEEEESCG
T ss_pred cCCC-EEEEeCCCcEEEEeCCC
Confidence 8888 56688899999999874
No 86
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.94 E-value=1.3e-26 Score=269.15 Aligned_cols=287 Identities=10% Similarity=0.029 Sum_probs=193.9
Q ss_pred cccCCCCCEEEEecCCC-------eEEeccCCCCCCCCC------CeeeeccCCCccccccceEEEEE-eCC--------
Q 043350 109 KPFQPMVEFIGSGGGTG-------IFKVPSRAAVHPGRP------PCLELRPHPLKETQAGRFLRNIA-CTD-------- 166 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg-------~irlW~~~~~~~g~~------~~~~l~~H~~~~~~~g~~V~~v~-s~d-------- 166 (1133)
+.|+|||++|++||++. .|++|+......... ....|.+|.. .+.+++ ..+
T Consensus 20 v~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~-------~v~s~~~~~~~~~~g~~~ 92 (365)
T 4h5i_A 20 AKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDD-------SPTAIDASKGIILVGCNE 92 (365)
T ss_dssp EEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSC-------CCCEEEEETTEEEEECCC
T ss_pred EEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCC-------ceEEEEeCCCEEEEEECC
Confidence 78999999999997654 599998763110000 0124566766 666665 221
Q ss_pred -CCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEE--eCCCeEEEEeC
Q 043350 167 -TQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTG--HKDGKIRSWKM 241 (1133)
Q Consensus 167 -g~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSg--s~Dg~V~vWd~ 241 (1133)
+..++ +.|+.+|+|++......+.... . ........+...+.+++|+|||++|++| +.|++|+|||+
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~ 164 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLT----S----VDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDP 164 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEE----E----ECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEET
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEee----e----eceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeEC
Confidence 12222 4588999999865322110000 0 0000111233458999999999998654 47899999999
Q ss_pred CCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccC
Q 043350 242 DQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRA 320 (1133)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~ 320 (1133)
... +++..+ .|.+.|++|+|+|+|+ |++++.|+ +++|+..+....
T Consensus 165 ~~~--------~~~~~~-~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~------------------------ 210 (365)
T 4h5i_A 165 SDL--------TEKFEI-ETRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCI------------------------ 210 (365)
T ss_dssp TTT--------EEEEEE-ECSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEE------------------------
T ss_pred CCC--------cEEEEe-CCCCceEEEEEccCCceEEecccee-EEEEEeccCcce------------------------
Confidence 861 333344 4888999999999999 88888655 555544221000
Q ss_pred ceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEee
Q 043350 321 QVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSS 400 (1133)
Q Consensus 321 ~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasg 400 (1133)
.......|...+.+++|+|++.. ++++
T Consensus 211 --------------------------------------------~~~~~~~~~~~v~~v~fspdg~~---------l~~~ 237 (365)
T 4h5i_A 211 --------------------------------------------ARKTDFDKNWSLSKINFIADDTV---------LIAA 237 (365)
T ss_dssp --------------------------------------------EEECCCCTTEEEEEEEEEETTEE---------EEEE
T ss_pred --------------------------------------------eeeecCCCCCCEEEEEEcCCCCE---------EEEE
Confidence 00112346677889999999999 9999
Q ss_pred CCCCccc----cccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEE
Q 043350 401 NKKEKPH----GFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSD 474 (1133)
Q Consensus 401 s~Dg~i~----~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~ 474 (1133)
+.++... .|+...... ..... ..+.+|...|++++|+|+| +|++|+.|++|+|||+ +++++.+
T Consensus 238 s~d~~~~~~i~~~~~~~~~~------~~~~~-----~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~ 306 (365)
T 4h5i_A 238 SLKKGKGIVLTKISIKSGNT------SVLRS-----KQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKI 306 (365)
T ss_dssp EESSSCCEEEEEEEEETTEE------EEEEE-----EEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEE
T ss_pred ecCCcceeEEeeccccccee------cceee-----eeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEE
Confidence 8887532 232211100 00000 1245788899999999999 9999999999999999 6788888
Q ss_pred E-ecCCcceeE--EecCCCEEEEEecCCeEEEEeCCC
Q 043350 475 I-LHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 475 ~-~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g 508 (1133)
+ .+|...|++ |+|||++||+||.|++|+|||+..
T Consensus 307 ~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 307 FKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp ETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred ecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 6 679999999 999999999999999999999853
No 87
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.94 E-value=1.4e-25 Score=261.66 Aligned_cols=354 Identities=10% Similarity=0.049 Sum_probs=217.8
Q ss_pred CCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eC-CCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccC
Q 043350 123 GTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CT-DTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRR 198 (1133)
Q Consensus 123 ~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~-dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~ 198 (1133)
.++.+++|+... +.. ...+++|.. .|.+++ ++ ++++|+ +.||.|++||+.+..........
T Consensus 21 ~~~~~~v~~~~~---~~~-~~~~~~h~~-------~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---- 85 (408)
T 4a11_B 21 AESTRRVLGLEL---NKD-RDVERIHGG-------GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK---- 85 (408)
T ss_dssp HHHHHHHHTEEE---CTT-EEECCCCSS-------CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC----
T ss_pred ccCcceeecccc---Ccc-eeeeeccCC-------cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecc----
Confidence 345678898763 344 778889998 999999 88 999888 78999999999873222100000
Q ss_pred CCCCCCceeeccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeC---C
Q 043350 199 GDEDAAPFYESANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQ---G 274 (1133)
Q Consensus 199 g~~~~~~~~~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~---g 274 (1133)
............|..+|.+++|+| ++.+|++|+.||.|++||+.. ........|...+.+++|++. +
T Consensus 86 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (408)
T 4a11_B 86 AVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT---------LQTADVFNFEETVYSHHMSPVSTKH 156 (408)
T ss_dssp EEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTT---------TEEEEEEECSSCEEEEEECSSCSSC
T ss_pred ccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCC---------CccceeccCCCceeeeEeecCCCCC
Confidence 000000001135888999999999 788999999999999999987 333333447889999999985 4
Q ss_pred c-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCC
Q 043350 275 D-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPL 353 (1133)
Q Consensus 275 ~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~ 353 (1133)
. |++++.||.|++||+++......+...... +..+...+.... +++++ +.|+
T Consensus 157 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~------------------v~~~~~~~~~~~-ll~~~--------~~dg 209 (408)
T 4a11_B 157 CLVAVGTRGPKVQLCDLKSGSCSHILQGHRQE------------------ILAVSWSPRYDY-ILATA--------SADS 209 (408)
T ss_dssp CEEEEEESSSSEEEEESSSSCCCEEECCCCSC------------------EEEEEECSSCTT-EEEEE--------ETTS
T ss_pred cEEEEEcCCCeEEEEeCCCcceeeeecCCCCc------------------EEEEEECCCCCc-EEEEE--------cCCC
Confidence 4 999999999999999864222222211111 111111132221 23334 6788
Q ss_pred ceeEeecCCCc-eeEEE---------------ecCCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccccccccee
Q 043350 354 SFSLWDARSKE-LLKVF---------------NIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAI 417 (1133)
Q Consensus 354 ~I~lWD~~tg~-~l~~~---------------~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~ 417 (1133)
.|++||++++. .+..+ ..|...|.+++|+|++.+ +++++.|+.++.|+.+.....
T Consensus 210 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---------l~~~~~dg~i~vwd~~~~~~~ 280 (408)
T 4a11_B 210 RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH---------LLTVGTDNRMRLWNSSNGENT 280 (408)
T ss_dssp CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE---------EEEEETTSCEEEEETTTCCBC
T ss_pred cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCE---------EEEecCCCeEEEEECCCCccc
Confidence 89999998665 44444 567788999999999999 999999999986654422211
Q ss_pred eccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEE
Q 043350 418 MGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYV 494 (1133)
Q Consensus 418 ~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Las 494 (1133)
........ ..........+.....+.+++++.|+.|++||+ +++++..+.+|...|++ |+|++++|++
T Consensus 281 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 351 (408)
T 4a11_B 281 LVNYGKVC---------NNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYS 351 (408)
T ss_dssp CCCCCCCC---------CCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred eecccccc---------ccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEE
Confidence 10000000 000011111222223337888899999999999 77999999999999998 9999999999
Q ss_pred EecCCeEEEEeCCC-CcceeeeccccCeEEeeec-ccceeeecccCCeeecccc
Q 043350 495 GYVSGYLQILDLDG-NLTASWIAHSSPVLKLAVG-VDHIYSLAAHGGIRGWTFT 546 (1133)
Q Consensus 495 gs~DG~I~vwd~~g-~~l~~~~~H~~~V~~l~fs-~~~L~S~s~Dg~I~lW~l~ 546 (1133)
|+.||.|++||++. +++.....+... ..+... .....+.+.|+.+++|+..
T Consensus 352 ~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 352 GSRDCNILAWVPSLYEPVPDDDETTTK-SQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp EETTSCEEEEEECC----------------------------------------
T ss_pred ECCCCeEEEEeCCCCCccCCCCceEec-cccccccceeecccCccCceeecCCc
Confidence 99999999999974 444333332221 122222 4455677889999999854
No 88
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.3e-26 Score=269.78 Aligned_cols=288 Identities=9% Similarity=0.068 Sum_probs=217.2
Q ss_pred CCCeEEEEEeCCCC-EEEEE----------eCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEE
Q 043350 212 TSPTMCLMVDCGNR-LVWTG----------HKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSG 279 (1133)
Q Consensus 212 ~s~V~~la~spd~~-~LaSg----------s~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sg 279 (1133)
..+|.|++|+|+++ +|++| +.|+.|+||++..+.. ........|...|++++|+|++. |++|
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 85 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADS------EKPIASLQVDSKFNDLDWSHNNKIIAGA 85 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGG------CSCSCCCCCSSCEEEEEECSSSSCEEEE
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCC------CcEEEEEecCCceEEEEECCCCCeEEEE
Confidence 34688999999987 99999 8999999999986221 11223346899999999999999 9999
Q ss_pred eCCCcEEEEeCCCC---c-eeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCce
Q 043350 280 GEGGVIKIWPWESI---E-KSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSF 355 (1133)
Q Consensus 280 s~DgtI~iWdl~~~---~-~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I 355 (1133)
+.||.|++|++... . ....+..... .+..+...+. +..+++++ +.|+.|
T Consensus 86 ~~dg~v~vw~~~~~~~~~~~~~~~~~h~~------------------~v~~~~~~~~-~~~~l~s~--------~~dg~v 138 (416)
T 2pm9_A 86 LDNGSLELYSTNEANNAINSMARFSNHSS------------------SVKTVKFNAK-QDNVLASG--------GNNGEI 138 (416)
T ss_dssp ESSSCEEEECCSSTTSCCCEEEECCCSSS------------------CCCEEEECSS-STTBEEEE--------CSSSCE
T ss_pred ccCCeEEEeecccccccccchhhccCCcc------------------ceEEEEEcCC-CCCEEEEE--------cCCCeE
Confidence 99999999999761 1 1111111111 1111122122 12233344 678999
Q ss_pred eEeecCCCc------eeE---EEecCCcceeEEEeCCC-CCccccccceEEEEeeCCCCccccccccccceeeccCCceE
Q 043350 356 SLWDARSKE------LLK---VFNIEGHIENRVDTQSV-QDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVR 425 (1133)
Q Consensus 356 ~lWD~~tg~------~l~---~~~~h~~~v~~l~~sp~-g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~ 425 (1133)
++||+.+++ ... .+..|...+.+++|+|+ +.+ +++++.|+.|+.|+.+.... +.
T Consensus 139 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------l~~~~~dg~v~iwd~~~~~~-------~~ 202 (416)
T 2pm9_A 139 FIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHV---------FASAGSSNFASIWDLKAKKE-------VI 202 (416)
T ss_dssp EBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTE---------EEEESSSSCEEEEETTTTEE-------EE
T ss_pred EEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcE---------EEEEcCCCCEEEEECCCCCc-------ce
Confidence 999999876 332 34678889999999999 677 99999999998666443221 11
Q ss_pred EEEEecCCcccCCCCCEEEEEECCCC--eEEEEecCC---eEEEEeCC-C-CeeEEEe-cCCcceeE--Eec-CCCEEEE
Q 043350 426 RVATRGAGAFVDDTKRTEAMVLTADG--MIWSGCTNG---LLVQWDGN-G-NRVSDIL-HHQCAVQC--FCT-YGSRMYV 494 (1133)
Q Consensus 426 ~v~~~p~g~~~~h~~~V~sl~~spdg--~L~sgs~DG---~I~vWd~~-g-~~l~~~~-~h~~~V~~--fs~-dg~~Las 494 (1133)
. +.......+|...|.+++|+|++ .|++++.|+ .|++||+. + .++..+. .|...|.+ |+| ++++|++
T Consensus 203 ~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s 280 (416)
T 2pm9_A 203 H--LSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLS 280 (416)
T ss_dssp E--ECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEE
T ss_pred E--EeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEE
Confidence 1 11111223457889999999997 899999999 99999994 3 6777888 89999998 898 8999999
Q ss_pred EecCCeEEEEeCC-CCcceeeeccccCeEEeeec--c-cceeeecccCCeeeccccCCCC
Q 043350 495 GYVSGYLQILDLD-GNLTASWIAHSSPVLKLAVG--V-DHIYSLAAHGGIRGWTFTSPSP 550 (1133)
Q Consensus 495 gs~DG~I~vwd~~-g~~l~~~~~H~~~V~~l~fs--~-~~L~S~s~Dg~I~lW~l~s~~~ 550 (1133)
|+.||+|++||+. ++++..+.+|...|.+++|+ + .+|++++.||.|++|++.....
T Consensus 281 ~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 281 SGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp EESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred EeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 9999999999987 57888999999999999999 5 7999999999999999987543
No 89
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.94 E-value=2.2e-25 Score=264.85 Aligned_cols=272 Identities=19% Similarity=0.309 Sum_probs=211.8
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEE
Q 043350 210 ANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIW 288 (1133)
Q Consensus 210 ~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iW 288 (1133)
.|..+|.|+.+ ++++|++|+.||+|++||+..+ +....+.+|.+.|++++| +++ |++|+.||+|++|
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~--------~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vw 198 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL--------ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW 198 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSC--------CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCC--------eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEE
Confidence 46678999887 7899999999999999998761 456678899999999999 677 9999999999999
Q ss_pred eCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCcee--
Q 043350 289 PWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELL-- 366 (1133)
Q Consensus 289 dl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l-- 366 (1133)
|+.+......+...... +..+. ..++ .++++ +.|+.|++||+.+++.+
T Consensus 199 d~~~~~~~~~~~~h~~~---------v~~l~-----------~~~~--~l~s~--------s~dg~i~vwd~~~~~~~~~ 248 (435)
T 1p22_A 199 DVNTGEMLNTLIHHCEA---------VLHLR-----------FNNG--MMVTC--------SKDRSIAVWDMASPTDITL 248 (435)
T ss_dssp ESSSCCEEEEECCCCSC---------EEEEE-----------CCTT--EEEEE--------ETTSCEEEEECSSSSCCEE
T ss_pred ECCCCcEEEEEcCCCCc---------EEEEE-----------EcCC--EEEEe--------eCCCcEEEEeCCCCCCcee
Confidence 99875333222222111 11111 1122 34444 78999999999988766
Q ss_pred -EEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEE
Q 043350 367 -KVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAM 445 (1133)
Q Consensus 367 -~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl 445 (1133)
..+.+|...|.++++ ++.+ +++|+.|++|+.|+.+.... +. .+.+|...|.++
T Consensus 249 ~~~~~~~~~~v~~~~~--~~~~---------l~s~~~dg~i~vwd~~~~~~-------~~--------~~~~~~~~v~~~ 302 (435)
T 1p22_A 249 RRVLVGHRAAVNVVDF--DDKY---------IVSASGDRTIKVWNTSTCEF-------VR--------TLNGHKRGIACL 302 (435)
T ss_dssp EEEECCCSSCEEEEEE--ETTE---------EEEEETTSEEEEEETTTCCE-------EE--------EEECCSSCEEEE
T ss_pred eeEecCCCCcEEEEEe--CCCE---------EEEEeCCCeEEEEECCcCcE-------EE--------EEcCCCCcEEEE
Confidence 677889999999998 6778 99999999998666442211 11 134566777777
Q ss_pred EECCCCeEEEEecCCeEEEEeC-CCCeeEEEecCCcceeEEecCCCEEEEEecCCeEEEEeCCC-C---------cceee
Q 043350 446 VLTADGMIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQCFCTYGSRMYVGYVSGYLQILDLDG-N---------LTASW 514 (1133)
Q Consensus 446 ~~spdg~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~fs~dg~~Lasgs~DG~I~vwd~~g-~---------~l~~~ 514 (1133)
.++ +..+++|+.||.|++||+ +++++..+.+|...|.++..++++|++|+.||.|++||+.. . .+..+
T Consensus 303 ~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 381 (435)
T 1p22_A 303 QYR-DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL 381 (435)
T ss_dssp EEE-TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE
T ss_pred EeC-CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeec
Confidence 773 239999999999999999 67999999999999999888999999999999999999853 2 57788
Q ss_pred eccccCeEEeeecccceeeecccCCeeeccccCCCC
Q 043350 515 IAHSSPVLKLAVGVDHIYSLAAHGGIRGWTFTSPSP 550 (1133)
Q Consensus 515 ~~H~~~V~~l~fs~~~L~S~s~Dg~I~lW~l~s~~~ 550 (1133)
.+|.+.|++++|++.+|++++.||+|++||+.....
T Consensus 382 ~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 382 VEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp CCCSSCCCCEEECSSCEEECCSSSEEEEEC------
T ss_pred cCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCCC
Confidence 999999999999999999999999999999876443
No 90
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.94 E-value=2.1e-25 Score=266.70 Aligned_cols=308 Identities=15% Similarity=0.203 Sum_probs=225.1
Q ss_pred cCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE-ecCCcEEEeeCCCCCCc
Q 043350 111 FQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA-GQECGVRFWNLEDSYEP 188 (1133)
Q Consensus 111 ~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla-s~Dg~VrvWdl~~~~~~ 188 (1133)
+.+++.+|++|+.||+|++|+..+ ++. +..+.+|.. .|++++ ++++.+++ +.|++|++||+.+...
T Consensus 128 ~~~~~~~l~sgs~dg~i~vwd~~~---~~~-~~~~~~h~~-------~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~- 195 (464)
T 3v7d_B 128 LQFEDNYVITGADDKMIRVYDSIN---KKF-LLQLSGHDG-------GVWALKYAHGGILVSGSTDRTVRVWDIKKGCC- 195 (464)
T ss_dssp EEEETTEEEEEETTSCEEEEETTT---TEE-EEEECCCSS-------CEEEEEECSTTEEEEEETTSCEEEEETTTTEE-
T ss_pred EEECCCEEEEEcCCCcEEEEECCC---CcE-EEEEeCCCc-------CEEEEEEcCCCEEEEEeCCCCEEEEECCCCcE-
Confidence 355788999999999999999873 444 888999999 999999 88884444 8999999999976422
Q ss_pred CcCCCccccCCCCCCCceeeccCCCCeEEEEEe--CCCCEEEEEeCCCeEEEEeCCCCCCCCCC---------------C
Q 043350 189 GAGIGGRVRRGDEDAAPFYESANTSPTMCLMVD--CGNRLVWTGHKDGKIRSWKMDQTLDDANN---------------P 251 (1133)
Q Consensus 189 ~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~s--pd~~~LaSgs~Dg~V~vWd~~~~~~~~~~---------------~ 251 (1133)
......|.++|.|++|+ +++.+|++|+.||+|++||+......... .
T Consensus 196 ----------------~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (464)
T 3v7d_B 196 ----------------THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN 259 (464)
T ss_dssp ----------------EEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGC
T ss_pred ----------------EEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCC
Confidence 22455788899999999 47899999999999999999863320000 0
Q ss_pred cccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccC
Q 043350 252 FKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSI 330 (1133)
Q Consensus 252 ~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~ 330 (1133)
......+.+|...|.++ +++++ |++|+.||+|++||+.+......+...... +..++.
T Consensus 260 ~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~------------------v~~~~~- 318 (464)
T 3v7d_B 260 PYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR------------------IYSTIY- 318 (464)
T ss_dssp TTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC------------------EEEEEE-
T ss_pred eEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCC------------------EEEEEE-
Confidence 00244678899999887 56788 999999999999999874333222222111 111111
Q ss_pred CCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccc
Q 043350 331 SSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFL 410 (1133)
Q Consensus 331 ~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~ 410 (1133)
.++...++++ +.|+.|++||+++++++..+.+|...|.++.++ +.+ +++++.|++++.|+
T Consensus 319 -~~~~~~l~sg--------~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~---------l~s~s~dg~v~vwd 378 (464)
T 3v7d_B 319 -DHERKRCISA--------SMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKF---------LVSAAADGSIRGWD 378 (464)
T ss_dssp -ETTTTEEEEE--------ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSE---------EEEEETTSEEEEEE
T ss_pred -cCCCCEEEEE--------eCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCE---------EEEEeCCCcEEEEE
Confidence 1222334444 789999999999999999999999999999998 467 99999999998666
Q ss_pred ccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEE-EecCCcceeEEec
Q 043350 411 QRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSD-ILHHQCAVQCFCT 487 (1133)
Q Consensus 411 ~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~-~~~h~~~V~~fs~ 487 (1133)
.+.... .... .+...+..+++++++ +|++|+ ||.|++||+ +++.+.. +..|...|+++..
T Consensus 379 ~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~ 441 (464)
T 3v7d_B 379 ANDYSR---------KFSY-------HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNF 441 (464)
T ss_dssp TTTCCE---------EEEE-------ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEE
T ss_pred CCCCce---------eeee-------cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEe
Confidence 442211 1111 234456677788888 788877 999999999 6777775 5668899999655
Q ss_pred CCCEEEEE-ecCCeEEEE
Q 043350 488 YGSRMYVG-YVSGYLQIL 504 (1133)
Q Consensus 488 dg~~Lasg-s~DG~I~vw 504 (1133)
+++.++++ +.||.+.+|
T Consensus 442 ~~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 442 KGKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp ETTEEEEEEEETTEEEEE
T ss_pred cCCEEEEEEEeCCeEEEE
Confidence 67666555 466665554
No 91
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.94 E-value=2.3e-25 Score=259.73 Aligned_cols=311 Identities=10% Similarity=0.074 Sum_probs=218.6
Q ss_pred eeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEE
Q 043350 142 CLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCL 218 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~l 218 (1133)
...+++|.. .|++++ ++ .+|+ +.|++|++|++........ .........|..+|.|+
T Consensus 9 ~~~~~~h~~-------~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~-----------~~~~~~~~~h~~~v~~~ 68 (397)
T 1sq9_A 9 ANAGKAHDA-------DIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP-----------KDKSYSHFVHKSGLHHV 68 (397)
T ss_dssp EEESSCSSS-------CEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG-----------GGGEEEEECCTTCEEEE
T ss_pred hhhhhhhhc-------CeEEEEecC--CeEEEEcCCCEEEEEECCCcccccC-----------CCcceEEecCCCcEEEE
Confidence 446778998 999999 77 4555 8899999999987431100 00123455788999999
Q ss_pred EEeCC----C---CEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccC-----CCCeEEEEEe----eCCc--EEEEe
Q 043350 219 MVDCG----N---RLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAH-----RGPVLAMIFS----SQGD--LWSGG 280 (1133)
Q Consensus 219 a~spd----~---~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH-----~~~V~sl~fs----p~g~--L~Sgs 280 (1133)
+|+|+ + ++|++|+.||.|++|++..... ........+.+| ...|.+++|+ |++. |++|+
T Consensus 69 ~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~ 145 (397)
T 1sq9_A 69 DVLQAIERDAFELCLVATTSFSGDLLFYRITREDE---TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATD 145 (397)
T ss_dssp EEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTT---TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEE
T ss_pred EEecccccCCccccEEEEEcCCCCEEEEEccCCcc---cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEe
Confidence 99999 9 9999999999999999986211 000115667788 5999999999 8887 89999
Q ss_pred CCCcEEEEeCCC------CceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCc
Q 043350 281 EGGVIKIWPWES------IEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLS 354 (1133)
Q Consensus 281 ~DgtI~iWdl~~------~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~ 354 (1133)
.||.|++||+.. ... +.+.+........ .........+..+...+ +. .++++ +.|+.
T Consensus 146 ~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~--~~-~l~~~--------~~dg~ 208 (397)
T 1sq9_A 146 VKGTTYIWKFHPFADESNSLT-LNWSPTLELQGTV-----ESPMTPSQFATSVDISE--RG-LIATG--------FNNGT 208 (397)
T ss_dssp TTSCEEEEEEESSSSHHHHTT-TCCCCEEEEEEEE-----CCSSSSCCCCCEEEECT--TS-EEEEE--------CTTSE
T ss_pred CCCcEEEEeCCccccccccce-eeccCcceeeeee-----ccccCCCCCceEEEECC--Cc-eEEEE--------eCCCc
Confidence 999999999976 211 1111110000000 00000001112222222 22 45555 78999
Q ss_pred eeEeecCCCceeEEEec---C---CcceeEEEeCCCCCccccccceEEEEeeCCC---CccccccccccceeeccCCceE
Q 043350 355 FSLWDARSKELLKVFNI---E---GHIENRVDTQSVQDQPVEDEMKVKFVSSNKK---EKPHGFLQRSRNAIMGAADAVR 425 (1133)
Q Consensus 355 I~lWD~~tg~~l~~~~~---h---~~~v~~l~~sp~g~~~~e~e~~v~lasgs~D---g~i~~~~~~~~~~~~~~~~~V~ 425 (1133)
|++||+++++.+..+.. | ...+.+++|+|++.+ |++++.| +.|+.|+.+....+ .
T Consensus 209 i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~---------l~~~~~d~~~g~i~i~d~~~~~~~-------~ 272 (397)
T 1sq9_A 209 VQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL---------LAIAHDSNSFGCITLYETEFGERI-------G 272 (397)
T ss_dssp EEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE---------EEEEEEETTEEEEEEEETTTCCEE-------E
T ss_pred EEEEECCCCceeEEEeccccccccCCccceEEECCCCCE---------EEEEecCCCCceEEEEECCCCccc-------c
Confidence 99999999999999998 8 889999999999999 9999999 88886654422211 1
Q ss_pred EEEE--ecCCc---ccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEe------cC--------------
Q 043350 426 RVAT--RGAGA---FVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDIL------HH-------------- 478 (1133)
Q Consensus 426 ~v~~--~p~g~---~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~------~h-------------- 478 (1133)
.+.. .+... ...|...|.+++|+|++ +|++++.||.|++||+ .++++..+. .|
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 352 (397)
T 1sq9_A 273 SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSL 352 (397)
T ss_dssp EECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBC
T ss_pred eeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccc
Confidence 1100 00000 11277889999999999 9999999999999999 678888998 77
Q ss_pred -CcceeE--EecCC----------CEEEEEecCCeEEEEeCCC
Q 043350 479 -QCAVQC--FCTYG----------SRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 479 -~~~V~~--fs~dg----------~~Lasgs~DG~I~vwd~~g 508 (1133)
...|++ |+|+| ++|++|+.||.|++||+.+
T Consensus 353 ~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 353 AEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp SSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred cCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 899998 99998 7999999999999999863
No 92
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.94 E-value=2e-25 Score=253.15 Aligned_cols=268 Identities=14% Similarity=0.168 Sum_probs=208.1
Q ss_pred eeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEee--CCc-EEEEeCCC
Q 043350 207 YESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSS--QGD-LWSGGEGG 283 (1133)
Q Consensus 207 ~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp--~g~-L~Sgs~Dg 283 (1133)
...+|..+|+|++|+|++++|++|+.||+|++|++..... ..+....+.+|...|++++|+| +++ |++|+.||
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg 81 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS----NWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK 81 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC----CEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC----cceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC
Confidence 4568999999999999999999999999999999985221 2245567789999999999999 578 99999999
Q ss_pred cEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCC
Q 043350 284 VIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSK 363 (1133)
Q Consensus 284 tI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg 363 (1133)
+|++||++...... . ....
T Consensus 82 ~v~vwd~~~~~~~~------~-------------------------------------------------------~~~~ 100 (351)
T 3f3f_A 82 TVKLWEEDPDQEEC------S-------------------------------------------------------GRRW 100 (351)
T ss_dssp CEEEEEECTTSCTT------S-------------------------------------------------------SCSE
T ss_pred eEEEEecCCCcccc------c-------------------------------------------------------ccCc
Confidence 99999986421000 0 0112
Q ss_pred ceeEEEecCCcceeEEEeCCC--CCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCC
Q 043350 364 ELLKVFNIEGHIENRVDTQSV--QDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKR 441 (1133)
Q Consensus 364 ~~l~~~~~h~~~v~~l~~sp~--g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~ 441 (1133)
+.+..+..|...|.+++|+|+ +.+ +++++.|++|+.|+.+....+... ..........-....+...
T Consensus 101 ~~~~~~~~~~~~v~~~~~~~~~~~~~---------l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 169 (351)
T 3f3f_A 101 NKLCTLNDSKGSLYSVKFAPAHLGLK---------LACLGNDGILRLYDALEPSDLRSW--TLTSEMKVLSIPPANHLQS 169 (351)
T ss_dssp EEEEEECCCSSCEEEEEECCGGGCSE---------EEEEETTCEEEEEECSSTTCTTCC--EEEEEEESCSCCCSSCSCC
T ss_pred ceeeeecccCCceeEEEEcCCCCCcE---------EEEecCCCcEEEecCCChHHhccc--cccccccccccccCCcccc
Confidence 345667778889999999999 888 999999999986664422211100 0000000100112367788
Q ss_pred EEEEEECCC---C-eEEEEecCCeEEEEeCC-CC--eeEEEecCCcceeE--EecCC----CEEEEEecCCeEEEEeCCC
Q 043350 442 TEAMVLTAD---G-MIWSGCTNGLLVQWDGN-GN--RVSDILHHQCAVQC--FCTYG----SRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 442 V~sl~~spd---g-~L~sgs~DG~I~vWd~~-g~--~l~~~~~h~~~V~~--fs~dg----~~Lasgs~DG~I~vwd~~g 508 (1133)
+.++.++|+ + .+++++.|+.+.+|+.. +. .+..+..|...|++ |+|++ ++|++|+.||.|++||+..
T Consensus 170 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 170 DFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE 249 (351)
T ss_dssp CEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred eeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence 999999997 6 99999999999888874 43 36777889999998 99998 8999999999999999864
Q ss_pred -----------------------------------------------CcceeeeccccCeEEeeec--ccceeeecccCC
Q 043350 509 -----------------------------------------------NLTASWIAHSSPVLKLAVG--VDHIYSLAAHGG 539 (1133)
Q Consensus 509 -----------------------------------------------~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~ 539 (1133)
+++..+.+|...|++++|+ +++|++++.||.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~ 329 (351)
T 3f3f_A 250 KLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGK 329 (351)
T ss_dssp CC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSC
T ss_pred CcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCc
Confidence 4566788999999999999 889999999999
Q ss_pred eeeccccCCCC
Q 043350 540 IRGWTFTSPSP 550 (1133)
Q Consensus 540 I~lW~l~s~~~ 550 (1133)
|++|++.....
T Consensus 330 v~iw~~~~~~~ 340 (351)
T 3f3f_A 330 VRLWKATYSNE 340 (351)
T ss_dssp EEEEEECTTSC
T ss_pred EEEEecCcCcc
Confidence 99999987543
No 93
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.94 E-value=4.4e-26 Score=261.70 Aligned_cols=312 Identities=16% Similarity=0.117 Sum_probs=222.6
Q ss_pred CCCCCCCCCcccccCCC----CCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCC----CC
Q 043350 98 GPDAADDQQQHKPFQPM----VEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTD----TQ 168 (1133)
Q Consensus 98 ~~~~~~~~~~~~~~~p~----g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~d----g~ 168 (1133)
+|..++.. +.|+|+ ...+++++.++.|++|+..+ +.. +..+..|... .....|.+++ +++ +.
T Consensus 16 ~h~~~v~~---i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~---~~~-~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~ 86 (366)
T 3k26_A 16 DHNQPLFG---VQFNWHSKEGDPLVFATVGSNRVTLYECHS---QGE-IRLLQSYVDA--DADENFYTCAWTYDSNTSHP 86 (366)
T ss_dssp TTCSCEEE---EEECTTCCTTSCEEEEEEETTEEEEEEECG---GGC-EEEEEEEECS--CTTCCEEEEEEEECTTTCCE
T ss_pred CCCCceEE---EEEecccCCCCceEEEECCCCEEEEEEcCC---CcE-EEeeeecccc--CCCCcEEEEEeccCCCCCCC
Confidence 66666666 778874 44566666677999999874 333 5556554321 1122799999 777 56
Q ss_pred eEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCC
Q 043350 169 LWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTL 245 (1133)
Q Consensus 169 lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~ 245 (1133)
+++ +.|+.|++||+.+... ......|..+|.+++|+| ++++|++|+.||+|++||+..+
T Consensus 87 ~l~~~~~dg~i~v~d~~~~~~-----------------~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~- 148 (366)
T 3k26_A 87 LLAVAGSRGIIRIINPITMQC-----------------IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD- 148 (366)
T ss_dssp EEEEEETTCEEEEECTTTCCE-----------------EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT-
T ss_pred EEEEecCCCEEEEEEchhceE-----------------eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC-
Confidence 777 8899999999876321 123456888999999999 9999999999999999999861
Q ss_pred CCCCCCccccccc---ccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCcee------eEeCCCCceEEEEeecceE
Q 043350 246 DDANNPFKEGLSW---QAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKS------LSLKPEEKHMAALLVERSF 315 (1133)
Q Consensus 246 ~~~~~~~~~~~~l---~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~------l~~~~~~~~l~s~~~d~s~ 315 (1133)
+....+ .+|...|++++|+|+++ |++++.||.|++||+++.... ..+.+++..
T Consensus 149 -------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~---------- 211 (366)
T 3k26_A 149 -------TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTN---------- 211 (366)
T ss_dssp -------EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCS----------
T ss_pred -------eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCc----------
Confidence 333344 78999999999999999 999999999999999863111 111111111
Q ss_pred EEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceE
Q 043350 316 IDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKV 395 (1133)
Q Consensus 316 ~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v 395 (1133)
...... . ...........|...|.+++|+ +.+
T Consensus 212 --------------------~~~~~~--------------~----~~~~~~~~~~~~~~~v~~~~~~--~~~-------- 243 (366)
T 3k26_A 212 --------------------RPFISQ--------------K----IHFPDFSTRDIHRNYVDCVRWL--GDL-------- 243 (366)
T ss_dssp --------------------SCCCCE--------------E----ECCCSEEECSSCSSCCCEEEEE--TTE--------
T ss_pred --------------------ccccce--------------e----eccCccccccCCcceEEEEEEc--CCE--------
Confidence 000000 0 0111223455688889999998 667
Q ss_pred EEEeeCCCCccccccccccc----eeeccCCceEEEEEecCCcccCCCCCEEEEEECCC--C-eEEEEecCCeEEEEeCC
Q 043350 396 KFVSSNKKEKPHGFLQRSRN----AIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTAD--G-MIWSGCTNGLLVQWDGN 468 (1133)
Q Consensus 396 ~lasgs~Dg~i~~~~~~~~~----~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spd--g-~L~sgs~DG~I~vWd~~ 468 (1133)
+++++.|+.|+.|+.+... .+..+...+..+.. +..|...|.+++|+|+ + +|++|+.||.|++||+.
T Consensus 244 -l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~ 317 (366)
T 3k26_A 244 -ILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGR-----FDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLE 317 (366)
T ss_dssp -EEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEE-----EECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECC
T ss_pred -EEEEecCCEEEEEeCCCccccccccccCCcchheecc-----ccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECC
Confidence 9999999999866543221 12222222222222 4577888999999999 8 99999999999999994
Q ss_pred -CC----eeEEEecC--CcceeE--EecCCCEEEEEecCCeEEEEeCC
Q 043350 469 -GN----RVSDILHH--QCAVQC--FCTYGSRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 469 -g~----~l~~~~~h--~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~ 507 (1133)
++ .+..+..| ...|++ |+|++++|++|+.||.|++||+.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 318 VEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 33 44577777 788988 99999999999999999999974
No 94
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.8e-26 Score=273.98 Aligned_cols=305 Identities=7% Similarity=-0.032 Sum_probs=222.9
Q ss_pred ccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEEecCCcEEEeeCCCCC
Q 043350 108 HKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWAGQECGVRFWNLEDSY 186 (1133)
Q Consensus 108 ~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~llas~Dg~VrvWdl~~~~ 186 (1133)
.+.|+|||+++||||.|++|+ +... ...+.+|+. .|++++ +|+| .++.+.+|+.+...
T Consensus 20 sv~~SpDG~~iASas~D~TV~--d~~~-------~~~l~gh~~-------~v~~V~FsPdg-----~~~~~~~~~~~~~~ 78 (588)
T 2j04_A 20 NLTWARDGTLYLTTFPDISIG--QPKY-------AKDINCNSK-------NLFHVKEFPLE-----FENKLDFELAQQNG 78 (588)
T ss_dssp CEEECTTSCEEEECSSSEEEE--EECC-------CSCCSSBGG-------GTEEEEEECCC-----CCCTTTTSCCCSSC
T ss_pred EEEECCCCCEEEEEcCCceee--cccc-------cceecCCCc-------cEEEEEECCCC-----CcceEEEEeCCCce
Confidence 388999999999999999999 5331 234578998 999999 9988 46666666654321
Q ss_pred CcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCC---
Q 043350 187 EPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRG--- 263 (1133)
Q Consensus 187 ~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~--- 263 (1133)
. ....|...|.+++|+|+|++||+++.||+|++|+..+ .+..+. |..
T Consensus 79 -~------------------~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----------~l~~l~-~~~~~~ 128 (588)
T 2j04_A 79 -L------------------LNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----------MLTNLD-SKGNLS 128 (588)
T ss_dssp -S------------------STTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE----------EEEECC-CSSCST
T ss_pred -E------------------eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----------eeeecc-CCCccc
Confidence 1 1113456899999999999999999999999999653 334455 655
Q ss_pred --CeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCc---------eeeEeCCCCceEEEEeecceEEEccCceeeeccccCC
Q 043350 264 --PVLAMIFSSQGD-LWSGGEGGVIKIWPWESIE---------KSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSIS 331 (1133)
Q Consensus 264 --~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~---------~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~ 331 (1133)
.|.+++|+|+|+ |++|+.||+|+|||+.+.. ..+..+..+.. ..+..++.
T Consensus 129 ~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~----------------~~V~sVaw-- 190 (588)
T 2j04_A 129 SRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSK----------------DWVTHIVW-- 190 (588)
T ss_dssp TTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCC----------------CCEEEEEE--
T ss_pred cccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccccc----------------ccEEEEEE--
Confidence 599999999999 9999999999999998742 11111111100 01222222
Q ss_pred CCCeEEEEecCCceEEEecCCCceeEeecCCCce---eEEE-ecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccc
Q 043350 332 STEIKCMLSDHARARVWCAQPLSFSLWDARSKEL---LKVF-NIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPH 407 (1133)
Q Consensus 332 ~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~---l~~~-~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~ 407 (1133)
++++ ++++ +.|++|++||+..+.. .+++ .+|...|.+++|+ +.. +|+++ +++|+
T Consensus 191 SPdg--Laas--------s~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~---------LASa~-~~tIk 248 (588)
T 2j04_A 191 YEDV--LVAA--------LSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYK---------VVLTC-PGYVH 248 (588)
T ss_dssp ETTE--EEEE--------ETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTE---------EEEEC-SSEEE
T ss_pred cCCc--EEEE--------eCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCE---------EEEEe-CCeEE
Confidence 2333 4444 6799999999988774 3567 4777889999999 567 88887 68888
Q ss_pred cccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEE--CCCC-eEEEEecCCeEEEEeCCCCeeEEEecCCcceeE
Q 043350 408 GFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVL--TADG-MIWSGCTNGLLVQWDGNGNRVSDILHHQCAVQC 484 (1133)
Q Consensus 408 ~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~--spdg-~L~sgs~DG~I~vWd~~g~~l~~~~~h~~~V~~ 484 (1133)
.|+...... ..+. .+|...+..+++ +|++ .|+++++||+ ++|..+ .+.
T Consensus 249 LWd~~~~~~----------~~~~-----~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d------------~~~- 299 (588)
T 2j04_A 249 KIDLKNYSI----------SSLK-----TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED------------ELH- 299 (588)
T ss_dssp EEETTTTEE----------EEEE-----CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS------------SEE-
T ss_pred EEECCCCeE----------EEEE-----cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec------------cEE-
Confidence 665332111 0111 257777777888 8999 9999999999 999887 133
Q ss_pred EecCCCEEEEEecCCeEEEEeCCCCcceeeeccccCeEEeeec--ccceeeec
Q 043350 485 FCTYGSRMYVGYVSGYLQILDLDGNLTASWIAHSSPVLKLAVG--VDHIYSLA 535 (1133)
Q Consensus 485 fs~dg~~Lasgs~DG~I~vwd~~g~~l~~~~~H~~~V~~l~fs--~~~L~S~s 535 (1133)
++||+..+++. |+++++|+..++.+..+.+ ...|.+++|+ |+.+++++
T Consensus 300 ~spd~~l~a~~--d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 300 VTADNIIAPYL--EKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp EECCCSSHHHH--HHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSEEEEEE
T ss_pred ECCCceEEEEc--CCEEEEEECCCCceeeecc-ceEEEEEEECCCCCEEEEEE
Confidence 89999887764 9999999998887776666 7789999999 66777765
No 95
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.94 E-value=6.7e-25 Score=251.15 Aligned_cols=286 Identities=12% Similarity=0.146 Sum_probs=211.9
Q ss_pred cCCCCCCCCCcccccCCCCCE-EEEecC---CCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCC---CC
Q 043350 97 PGPDAADDQQQHKPFQPMVEF-IGSGGG---TGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTD---TQ 168 (1133)
Q Consensus 97 ~~~~~~~~~~~~~~~~p~g~~-lasgs~---dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~d---g~ 168 (1133)
.+|...+.. +.|+|++.. +++|+. ||.|++|+..+ ++.......+|.. .|.+++ +++ +.
T Consensus 15 ~~h~~~v~~---~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~---~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~ 81 (357)
T 3i2n_A 15 KGFNYTVFD---CKWVPCSAKFVTMGNFARGTGVIQLYEIQH---GDLKLLREIEKAK-------PIKCGTFGATSLQQR 81 (357)
T ss_dssp EECSSCEEE---EEECTTSSEEEEEEC--CCCEEEEEEEECS---SSEEEEEEEEESS-------CEEEEECTTCCTTTC
T ss_pred cCCCCceEE---EEEcCCCceEEEecCccCCCcEEEEEeCCC---CcccceeeecccC-------cEEEEEEcCCCCCCc
Confidence 356666555 889999964 556665 99999999873 3331233346777 899999 777 57
Q ss_pred eEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEE------eCCCCEEEEEeCCCeEEEEe
Q 043350 169 LWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMV------DCGNRLVWTGHKDGKIRSWK 240 (1133)
Q Consensus 169 lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~------spd~~~LaSgs~Dg~V~vWd 240 (1133)
+++ +.|+.|++||+...... ......|..+|.+++| +|++++|++|+.||+|++||
T Consensus 82 ~l~~~~~dg~i~iwd~~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd 145 (357)
T 3i2n_A 82 YLATGDFGGNLHIWNLEAPEMP----------------VYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWD 145 (357)
T ss_dssp CEEEEETTSCEEEECTTSCSSC----------------SEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEEC
T ss_pred eEEEecCCCeEEEEeCCCCCcc----------------EEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEe
Confidence 777 78999999999864311 2245578889999955 67899999999999999999
Q ss_pred CCCCCCCCCCCcccccccccCC----CCeEEEE----EeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEee
Q 043350 241 MDQTLDDANNPFKEGLSWQAHR----GPVLAMI----FSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLV 311 (1133)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~gH~----~~V~sl~----fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~ 311 (1133)
+.... .....+..|. ..|++++ |+|++. |++++.||.|++||+++.
T Consensus 146 ~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------------------ 200 (357)
T 3i2n_A 146 PRQKD-------DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM------------------ 200 (357)
T ss_dssp TTSCS-------SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT------------------
T ss_pred CCCCC-------CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC------------------
Confidence 98622 1344454443 3899998 678888 999999999999998531
Q ss_pred cceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCC---CCCcc
Q 043350 312 ERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQS---VQDQP 388 (1133)
Q Consensus 312 d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp---~g~~~ 388 (1133)
+. .....+...+.+++|+| ++.+
T Consensus 201 ----------------------------------------------------~~-~~~~~~~~~v~~~~~~~~~~~~~~- 226 (357)
T 3i2n_A 201 ----------------------------------------------------AL-RWETNIKNGVCSLEFDRKDISMNK- 226 (357)
T ss_dssp ----------------------------------------------------EE-EEEEECSSCEEEEEESCSSSSCCE-
T ss_pred ----------------------------------------------------ce-eeecCCCCceEEEEcCCCCCCCCE-
Confidence 11 11234566788999999 8888
Q ss_pred ccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC--eEEEEecCCeEEEEe
Q 043350 389 VEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG--MIWSGCTNGLLVQWD 466 (1133)
Q Consensus 389 ~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg--~L~sgs~DG~I~vWd 466 (1133)
+++++.|+.|+.|+.+..... ..+... .+.+|...|.+++|+|++ +|++|+.||.|++||
T Consensus 227 --------l~~~~~dg~i~i~d~~~~~~~-------~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 288 (357)
T 3i2n_A 227 --------LVATSLEGKFHVFDMRTQHPT-------KGFASV---SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWK 288 (357)
T ss_dssp --------EEEEESTTEEEEEEEEEEETT-------TEEEEE---EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred --------EEEECCCCeEEEEeCcCCCcc-------cceeee---ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEee
Confidence 999999999985554321110 001000 123778889999999988 699999999999999
Q ss_pred CC-C-------------------CeeEEEecCCcceeE--EecCCCEEE-EEecCCeEEEEeCCC
Q 043350 467 GN-G-------------------NRVSDILHHQCAVQC--FCTYGSRMY-VGYVSGYLQILDLDG 508 (1133)
Q Consensus 467 ~~-g-------------------~~l~~~~~h~~~V~~--fs~dg~~La-sgs~DG~I~vwd~~g 508 (1133)
+. + +++..+..|...|++ |+|+|++|+ +|+.||.|++||+..
T Consensus 289 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 289 YEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp EECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred cCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 83 2 357788889999998 999999998 899999999999863
No 96
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.93 E-value=1.6e-24 Score=256.19 Aligned_cols=287 Identities=14% Similarity=0.131 Sum_probs=203.3
Q ss_pred eEEEEE-eCCCCeEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCe
Q 043350 158 FLRNIA-CTDTQLWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGK 235 (1133)
Q Consensus 158 ~V~~v~-s~dg~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~ 235 (1133)
.+..|+ +++ .+|| +.|++|+|||..+..... .+....|...|+||+|+|+|++||+|+.||+
T Consensus 107 y~~~l~wS~~-n~lAvgld~tV~lWd~~tg~~~~---------------~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~ 170 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVALDNSVYLWSASSGDILQ---------------LLQMEQPGEYISSVAWIKEGNYLAVGTSSAE 170 (420)
T ss_dssp TCBCEEECTT-SEEEEEETTEEEEEETTTCCEEE---------------EEECCSTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred cceeEEECCC-CEEEEEeCCEEEEEECCCCCEEE---------------EEEecCCCCcEEEEEECCCCCEEEEEECCCe
Confidence 455677 655 4777 999999999988742210 1223457778999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCce---eeEeCCCCceEEEEee
Q 043350 236 IRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEK---SLSLKPEEKHMAALLV 311 (1133)
Q Consensus 236 V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~---~l~~~~~~~~l~s~~~ 311 (1133)
|+|||+.. .+.+..+.+|...|.+++++ +. |++|+.|+.+++||...... .+..+.....
T Consensus 171 v~iWd~~~--------~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~------ 234 (420)
T 4gga_A 171 VQLWDVQQ--------QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC------ 234 (420)
T ss_dssp EEEEETTT--------TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE------
T ss_pred EEEEEcCC--------CcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEeccccccee------
Confidence 99999986 15677889999999998875 57 99999999999999876322 1222222221
Q ss_pred cceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCc----eeEEEecCCcceeEEEeCCCCCc
Q 043350 312 ERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKE----LLKVFNIEGHIENRVDTQSVQDQ 387 (1133)
Q Consensus 312 d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~----~l~~~~~h~~~v~~l~~sp~g~~ 387 (1133)
.. . ..++...++++ +.|+.+++||..+++ .+..+..|...|.+++|+|.+..
T Consensus 235 ---~~-----------~--~~~~g~~l~s~--------~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~ 290 (420)
T 4gga_A 235 ---GL-----------R--WAPDGRHLASG--------GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN 290 (420)
T ss_dssp ---EE-----------E--ECTTSSEEEEE--------ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTT
T ss_pred ---ee-----------e--ecCCCCeeeee--------eccccceEEeeccccccceeeeeecccCCceeeeeeCCCccc
Confidence 11 1 12233344455 778999999998765 45677888899999999997765
Q ss_pred cccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEe--cCCeEEE
Q 043350 388 PVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGC--TNGLLVQ 464 (1133)
Q Consensus 388 ~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs--~DG~I~v 464 (1133)
.+-.++|+.|++|+.|+....... .. ..+...+.++.+++++ .+++++ .||.|++
T Consensus 291 ------~la~~~gs~D~~I~iwd~~t~~~~-------~~---------~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~i 348 (420)
T 4gga_A 291 ------VLATGGGTSDRHIRIWNVCSGACL-------SA---------VDAHSQVCSILWSPHYKELISGHGFAQNQLVI 348 (420)
T ss_dssp ------EEEEEECTTTCEEEEEETTTTEEE-------EE---------EECSSCEEEEEEETTTTEEEEEECTTTCCEEE
T ss_pred ------EEEEEeecCCCEEEEEeCCccccc-------ee---------eccccceeeeeecCCCCeEEEEEecCCCEEEE
Confidence 011235678999986654422211 11 1223457788888888 666654 7999999
Q ss_pred EeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCC-CcceeeeccccCeE
Q 043350 465 WDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG-NLTASWIAHSSPVL 522 (1133)
Q Consensus 465 Wd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g-~~l~~~~~H~~~V~ 522 (1133)
||. +++++.++.+|...|++ |+|+|++|++|+.||+|+|||+.. .+......|...+.
T Consensus 349 wd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~ 410 (420)
T 4gga_A 349 WKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAA 410 (420)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC-----------
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcc
Confidence 999 77999999999999998 999999999999999999999864 44555555554443
No 97
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.93 E-value=1.6e-25 Score=254.24 Aligned_cols=249 Identities=10% Similarity=0.080 Sum_probs=178.3
Q ss_pred eeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEE
Q 043350 143 LELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLM 219 (1133)
Q Consensus 143 ~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la 219 (1133)
..+.+|.. .|++++ +++|++|+ +.|++|++||+.+..... ...+.+|..+|.+++
T Consensus 7 ~~~~~H~~-------~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~---------------~~~l~gH~~~V~~v~ 64 (316)
T 3bg1_A 7 TVDTSHED-------MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQIL---------------IADLRGHEGPVWQVA 64 (316)
T ss_dssp -------C-------CEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEE---------------EEEEECCSSCEEEEE
T ss_pred eecccccC-------eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEE---------------EEEEcCCCccEEEEE
Confidence 34678988 999999 99999998 889999999987531100 124567889999999
Q ss_pred EeC--CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeC--Cc-EEEEeCCCcEEEEeCCCCc
Q 043350 220 VDC--GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQ--GD-LWSGGEGGVIKIWPWESIE 294 (1133)
Q Consensus 220 ~sp--d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~--g~-L~Sgs~DgtI~iWdl~~~~ 294 (1133)
|++ ++++|+||+.|++|++||+..+.. .....+.+|...|++++|+|+ |. |++|+.|++|++||+....
T Consensus 65 ~~~~~~~~~l~s~s~D~~v~iWd~~~~~~------~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~ 138 (316)
T 3bg1_A 65 WAHPMYGNILASCSYDRKVIIWREENGTW------EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG 138 (316)
T ss_dssp ECCGGGSSCEEEEETTSCEEEECCSSSCC------CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS
T ss_pred eCCCCCCCEEEEEECCCEEEEEECCCCcc------eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC
Confidence 986 489999999999999999986221 445677899999999999998 67 9999999999999986421
Q ss_pred eeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCc
Q 043350 295 KSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGH 374 (1133)
Q Consensus 295 ~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~ 374 (1133)
.. . ....+.+|..
T Consensus 139 ~~--------------------~-----------------------------------------------~~~~~~~h~~ 151 (316)
T 3bg1_A 139 QW--------------------E-----------------------------------------------VKKINNAHTI 151 (316)
T ss_dssp CE--------------------E-----------------------------------------------ECCBTTSSSS
T ss_pred Cc--------------------c-----------------------------------------------eeeeeccccC
Confidence 00 0 0000112222
Q ss_pred ceeEEEeCCC-----------------CCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccC
Q 043350 375 IENRVDTQSV-----------------QDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVD 437 (1133)
Q Consensus 375 ~v~~l~~sp~-----------------g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~ 437 (1133)
.+.+++|+|+ +.+ |++|+.|++|+.|+.+.... .... ..+.+
T Consensus 152 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~sgs~D~~v~lWd~~~~~~--------~~~~----~~l~~ 210 (316)
T 3bg1_A 152 GCNAVSWAPAVVPGSLIDHPSGQKPNYIKR---------FASGGCDNLIKLWKEEEDGQ--------WKEE----QKLEA 210 (316)
T ss_dssp CBCCCEECCCCCC------CCSCCCCCCCB---------EECCBTTSBCCEEEECTTSC--------EEEE----ECCBC
T ss_pred CcceEEEccccCCccccccccccCccccce---------EEEecCCCeEEEEEeCCCCc--------ccee----eeccc
Confidence 3333333333 356 99999999998665431100 0001 12457
Q ss_pred CCCCEEEEEECCCC-----eEEEEecCCeEEEEeCCC----C-eeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEe
Q 043350 438 DTKRTEAMVLTADG-----MIWSGCTNGLLVQWDGNG----N-RVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILD 505 (1133)
Q Consensus 438 h~~~V~sl~~spdg-----~L~sgs~DG~I~vWd~~g----~-~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd 505 (1133)
|...|.+++|+|++ +|++|+.||+|++|++.. . ....+..|...|++ |+|+|++||+|+.||+|++|+
T Consensus 211 h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 211 HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp CSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred CCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 77788888888863 799999999999999843 1 23445668889988 999999999999999999999
Q ss_pred CC
Q 043350 506 LD 507 (1133)
Q Consensus 506 ~~ 507 (1133)
..
T Consensus 291 ~~ 292 (316)
T 3bg1_A 291 ES 292 (316)
T ss_dssp EC
T ss_pred EC
Confidence 75
No 98
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.93 E-value=1.9e-24 Score=247.96 Aligned_cols=282 Identities=13% Similarity=0.119 Sum_probs=204.1
Q ss_pred eeeeccCCCccccccceEEEEE-eCC---CCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCe
Q 043350 142 CLELRPHPLKETQAGRFLRNIA-CTD---TQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPT 215 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V~~v~-s~d---g~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V 215 (1133)
+..+.+|.. .|++++ +++ |.+|+ +.|+.|++||+.+..... ......|..+|
T Consensus 32 ~~~~~~h~~-------~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~---------------~~~~~~h~~~v 89 (368)
T 3mmy_A 32 IEVTSSPDD-------SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI---------------PKAQQMHTGPV 89 (368)
T ss_dssp EECSSCCSS-------CEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE---------------EEEEEECSSCE
T ss_pred eEeccCCCC-------ceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee---------------EEEeccccCCE
Confidence 777889998 999999 887 58888 789999999998621111 23456788999
Q ss_pred EEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEE--eeCCc-EEEEeCCCcEEEEeCCC
Q 043350 216 MCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIF--SSQGD-LWSGGEGGVIKIWPWES 292 (1133)
Q Consensus 216 ~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~f--sp~g~-L~Sgs~DgtI~iWdl~~ 292 (1133)
.+++|+|++++|++|+.||.|++||+.. .....+.+|...|++++| ++++. |++|+.||+|++||+++
T Consensus 90 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 160 (368)
T 3mmy_A 90 LDVCWSDDGSKVFTASCDKTAKMWDLSS---------NQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 160 (368)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTT---------TEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC
T ss_pred EEEEECcCCCEEEEEcCCCcEEEEEcCC---------CCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC
Confidence 9999999999999999999999999987 445567889999999999 88888 99999999999999976
Q ss_pred CceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecC
Q 043350 293 IEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIE 372 (1133)
Q Consensus 293 ~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h 372 (1133)
......+....... .++ ......+++ ..++.+.+||+..........
T Consensus 161 ~~~~~~~~~~~~~~--------~~~-------------~~~~~~~~~----------~~~~~i~~~~~~~~~~~~~~~-- 207 (368)
T 3mmy_A 161 SNPMMVLQLPERCY--------CAD-------------VIYPMAVVA----------TAERGLIVYQLENQPSEFRRI-- 207 (368)
T ss_dssp SSCSEEEECSSCEE--------EEE-------------EETTEEEEE----------EGGGCEEEEECSSSCEEEEEC--
T ss_pred CcEEEEEecCCCce--------EEE-------------ecCCeeEEE----------eCCCcEEEEEeccccchhhhc--
Confidence 42222221111110 011 111222222 456677777775433211000
Q ss_pred CcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCC--
Q 043350 373 GHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTAD-- 450 (1133)
Q Consensus 373 ~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spd-- 450 (1133)
. ......+..+.+. ....
T Consensus 208 ---------~-----------------------------------~~~~~~~~~~~~~----------------~~~~~~ 227 (368)
T 3mmy_A 208 ---------E-----------------------------------SPLKHQHRCVAIF----------------KDKQNK 227 (368)
T ss_dssp ---------C-----------------------------------CSCSSCEEEEEEE----------------ECTTSC
T ss_pred ---------c-----------------------------------ccccCCCceEEEc----------------ccCCCC
Confidence 0 0000111122222 1111
Q ss_pred C-eEEEEecCCeEEEEeCCC----CeeEEEecCCc------------ceeE--EecCCCEEEEEecCCeEEEEeCC-CCc
Q 043350 451 G-MIWSGCTNGLLVQWDGNG----NRVSDILHHQC------------AVQC--FCTYGSRMYVGYVSGYLQILDLD-GNL 510 (1133)
Q Consensus 451 g-~L~sgs~DG~I~vWd~~g----~~l~~~~~h~~------------~V~~--fs~dg~~Lasgs~DG~I~vwd~~-g~~ 510 (1133)
. .+++|+.||.|++|++.. ..+..+..|.. .|++ |+|++++|++|+.||.|++||+. +++
T Consensus 228 ~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~ 307 (368)
T 3mmy_A 228 PTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTK 307 (368)
T ss_dssp EEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred CCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcE
Confidence 1 389999999999999944 45677777776 6887 99999999999999999999998 577
Q ss_pred ceeeeccccCeEEeeec--ccceeeecccCCeeeccccC
Q 043350 511 TASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 511 l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s 547 (1133)
+..+.+|..+|.+++|+ +++|++++.|+..+.|++..
T Consensus 308 ~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 308 LKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred EEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 88999999999999999 89999999999877776543
No 99
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.3e-24 Score=257.60 Aligned_cols=331 Identities=11% Similarity=0.113 Sum_probs=219.1
Q ss_pred cCCCCccccc---CCCCCCCCCcccccCC-CCCEEEEecCCCeEEeccCCCCCCCCC--CeeeeccCCCccccccceEEE
Q 043350 88 VPVNEDYVCP---GPDAADDQQQHKPFQP-MVEFIGSGGGTGIFKVPSRAAVHPGRP--PCLELRPHPLKETQAGRFLRN 161 (1133)
Q Consensus 88 ~~p~~~~~~~---~~~~~~~~~~~~~~~p-~g~~lasgs~dg~irlW~~~~~~~g~~--~~~~l~~H~~~~~~~g~~V~~ 161 (1133)
|.|.+..... +|..++.. +.|+| ++++|++|+.||+|++|+......+.. +...+ .|.. .|.+
T Consensus 48 w~~~g~~~~~~~~~h~~~V~~---~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~-------~v~~ 116 (437)
T 3gre_A 48 GNLRGKLIATLMENEPNSITS---SAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSS-------TVTQ 116 (437)
T ss_dssp GGCCCCEEEEECTTTTSCEEE---EEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSS-------CEEE
T ss_pred ccccceEEeeeccCCCCceEE---EEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCC-------CEEE
Confidence 5566655433 55555555 88999 999999999999999999763111211 12333 4777 9999
Q ss_pred EE-eCCCCeEE--ecCCcEEEeeCCC---C--CCcCcCCCccccCCCCCCCceeecc--CCCCeEEEE--EeCCCCEEEE
Q 043350 162 IA-CTDTQLWA--GQECGVRFWNLED---S--YEPGAGIGGRVRRGDEDAAPFYESA--NTSPTMCLM--VDCGNRLVWT 229 (1133)
Q Consensus 162 v~-s~dg~lla--s~Dg~VrvWdl~~---~--~~~~~gh~~~v~~g~~~~~~~~~~~--h~s~V~~la--~spd~~~LaS 229 (1133)
++ ++++.+|+ +.|++|++||+.. . .....+|. ...+.... +...+.|+. +++++.+|++
T Consensus 117 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~---------i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 187 (437)
T 3gre_A 117 ITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCEC---------IRKINLKNFGKNEYAVRMRAFVNEEKSLLVA 187 (437)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEE---------EEEEEGGGGSSCCCEEEEEEEECSSCEEEEE
T ss_pred EEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccce---------eEEEEccCcccccCceEEEEEEcCCCCEEEE
Confidence 99 99998888 8899999999852 1 11111111 00111111 556788888 5689999999
Q ss_pred EeCCCeEEEEeCCCCCCCCCCCccccccccc--CCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeC-CCCce
Q 043350 230 GHKDGKIRSWKMDQTLDDANNPFKEGLSWQA--HRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLK-PEEKH 305 (1133)
Q Consensus 230 gs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~g--H~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~-~~~~~ 305 (1133)
|+.||+|++||+... +.+..+.+ |.+.|++++|+|+++ |++|+.||+|++||++.......+. ....
T Consensus 188 ~~~d~~i~iwd~~~~--------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~- 258 (437)
T 3gre_A 188 LTNLSRVIIFDIRTL--------ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHA- 258 (437)
T ss_dssp EETTSEEEEEETTTC--------CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCE-
T ss_pred EeCCCeEEEEeCCCC--------eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCC-
Confidence 999999999999861 45666777 899999999999999 9999999999999998743222221 1111
Q ss_pred EEEEeecceEEEccCceeeecccc--CCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcc--------
Q 043350 306 MAALLVERSFIDLRAQVTVNGACS--ISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHI-------- 375 (1133)
Q Consensus 306 l~s~~~d~s~~d~~~~~~v~~~~~--~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~-------- 375 (1133)
.+..++. ...++..+++++ +.|+.|++||+++++++..+.+|...
T Consensus 259 -----------------~v~~~~~~~~~s~~~~~l~s~--------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 313 (437)
T 3gre_A 259 -----------------PITHVEVCQFYGKNSVIVVGG--------SSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP 313 (437)
T ss_dssp -----------------EEEEEEECTTTCTTEEEEEEE--------STTEEEEEEETTTTEEEEEEESSSSCCCGGGGSC
T ss_pred -----------------ceEEEEeccccCCCccEEEEE--------cCCCcEEEEEcCCCcEEEEEEcCCCCCccceecc
Confidence 1222211 134667778888 88999999999999999988866433
Q ss_pred ------------------eeEEEeCCCCCccccccceEEEEeeCCCCcccccccc---ccceeeccCCceEEEEEecCCc
Q 043350 376 ------------------ENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQR---SRNAIMGAADAVRRVATRGAGA 434 (1133)
Q Consensus 376 ------------------v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~---~~~~~~~~~~~V~~v~~~p~g~ 434 (1133)
|++++|+ ++.+ |++|+.|+.|+.|+.. ....+.++..
T Consensus 314 ~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~---------l~s~~~d~~i~~wd~~~~~~~~~~~~~~~------------ 371 (437)
T 3gre_A 314 IEKGLEELNFCGIRSLNALSTISVS-NDKI---------LLTDEATSSIVMFSLNELSSSKAVISPSR------------ 371 (437)
T ss_dssp BCSSGGGCCCCCCCSGGGGCCEEEE-TTEE---------EEEEGGGTEEEEEETTCGGGCEEEECC--------------
T ss_pred cccccccceecccccCCceEEEEEC-CceE---------EEecCCCCeEEEEECCCcccceEEecccc------------
Confidence 5556666 4456 9999999999866543 2233333221
Q ss_pred ccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecC--CCEEEEEecCCeEEEEe
Q 043350 435 FVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTY--GSRMYVGYVSGYLQILD 505 (1133)
Q Consensus 435 ~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~d--g~~Lasgs~DG~I~vwd 505 (1133)
....+....++++. +++.. |+. .+..+..+..|...|++ ++++ +.+|++|+.||.|+||+
T Consensus 372 ---~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 372 ---FSDVFIPTQVTANLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ---CCCEEEEEEEETTEEEEEEE--------CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ---cCceEEEEEeecceEEEEEe--------cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 12223444455555 33333 222 34445566679999998 7777 77999999999999995
No 100
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.93 E-value=6.9e-25 Score=249.97 Aligned_cols=284 Identities=9% Similarity=0.053 Sum_probs=219.4
Q ss_pred eccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEe
Q 043350 145 LRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVD 221 (1133)
Q Consensus 145 l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~s 221 (1133)
..+|.. .|++++ ++++.+|+ +.|+.|++|++....... .......|..+|.|++|+
T Consensus 7 ~~~h~~-------~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~--------------~~~~~~~~~~~v~~~~~~ 65 (342)
T 1yfq_A 7 EQAPKD-------YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV--------------DLLQSLRYKHPLLCCNFI 65 (342)
T ss_dssp SSCCSS-------CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE--------------EEEEEEECSSCEEEEEEE
T ss_pred ccCCCC-------cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccc--------------cceeeeecCCceEEEEEC
Confidence 357777 999999 99998888 789999999987642110 012334788899999999
Q ss_pred CCCC-EEEEEeCCCeEEEEeC-CCCCCCCCCCccccccccc--CCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCcee
Q 043350 222 CGNR-LVWTGHKDGKIRSWKM-DQTLDDANNPFKEGLSWQA--HRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKS 296 (1133)
Q Consensus 222 pd~~-~LaSgs~Dg~V~vWd~-~~~~~~~~~~~~~~~~l~g--H~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~ 296 (1133)
|+++ +|++|+.||.|++|++ .. .....+.+ |...|++++|+| +. |++++.|+.|++||+++....
T Consensus 66 ~~~~~~l~~~~~dg~i~~wd~~~~---------~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~ 135 (342)
T 1yfq_A 66 DNTDLQIYVGTVQGEILKVDLIGS---------PSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDG 135 (342)
T ss_dssp ESSSEEEEEEETTSCEEEECSSSS---------SSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTB
T ss_pred CCCCcEEEEEcCCCeEEEEEeccC---------CceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccc
Confidence 9999 9999999999999999 76 44567788 999999999999 88 999999999999997520000
Q ss_pred eEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcce
Q 043350 297 LSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIE 376 (1133)
Q Consensus 297 l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v 376 (1133)
... ..++++..+. +...+
T Consensus 136 ------~~~-------------------------------------------------------~~~~~~~~~~-~~~~v 153 (342)
T 1yfq_A 136 ------VIA-------------------------------------------------------VKNLNSNNTK-VKNKI 153 (342)
T ss_dssp ------CEE-------------------------------------------------------EEESCSSSSS-SCCCE
T ss_pred ------ccc-------------------------------------------------------ccCCeeeEEe-eCCce
Confidence 000 0011112222 55678
Q ss_pred eEEEeCCCCCccccccceEEEEeeCCCCccccccccc-cceeeccCCceEEEEEecCCcccCCCCCEEEEEECC-CC-eE
Q 043350 377 NRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRS-RNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTA-DG-MI 453 (1133)
Q Consensus 377 ~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~-~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~sp-dg-~L 453 (1133)
.+++|+|++ +++++.++.++.|+.+. ... ... .. ...+...+.+++++| ++ .+
T Consensus 154 ~~~~~~~~~-----------l~~~~~d~~i~i~d~~~~~~~------~~~-~~------~~~~~~~i~~i~~~~~~~~~l 209 (342)
T 1yfq_A 154 FTMDTNSSR-----------LIVGMNNSQVQWFRLPLCEDD------NGT-IE------ESGLKYQIRDVALLPKEQEGY 209 (342)
T ss_dssp EEEEECSSE-----------EEEEESTTEEEEEESSCCTTC------CCE-EE------ECSCSSCEEEEEECSGGGCEE
T ss_pred EEEEecCCc-----------EEEEeCCCeEEEEECCccccc------cce-ee------ecCCCCceeEEEECCCCCCEE
Confidence 889998765 67889999998555432 111 000 01 235667899999999 88 99
Q ss_pred EEEecCCeEEEEeC-CC------CeeEEEecCCc---------ceeE--EecCCCEEEEEecCCeEEEEeCC-CCcceee
Q 043350 454 WSGCTNGLLVQWDG-NG------NRVSDILHHQC---------AVQC--FCTYGSRMYVGYVSGYLQILDLD-GNLTASW 514 (1133)
Q Consensus 454 ~sgs~DG~I~vWd~-~g------~~l~~~~~h~~---------~V~~--fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~ 514 (1133)
++|+.||.|++|+. .+ +.+..+..|.. .|.+ |+|++++|++|+.||.|++||+. ++++..+
T Consensus 210 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 289 (342)
T 1yfq_A 210 ACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289 (342)
T ss_dssp EEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred EEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhh
Confidence 99999999999998 33 67778888765 8888 99999999999999999999997 5778889
Q ss_pred ecc-ccCeEEeeecccceeeecccCC-eeeccc
Q 043350 515 IAH-SSPVLKLAVGVDHIYSLAAHGG-IRGWTF 545 (1133)
Q Consensus 515 ~~H-~~~V~~l~fs~~~L~S~s~Dg~-I~lW~l 545 (1133)
.+| ..+|.+++-++++|++++.||. .+.|..
T Consensus 290 ~~~h~~~v~~~~~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 290 AKFNEDSVVKIACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp CCCSSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred hcccCCCceEecCCCCeEEEEecCCcccccccc
Confidence 998 9999999933999999999998 777764
No 101
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.93 E-value=2.2e-24 Score=256.09 Aligned_cols=265 Identities=16% Similarity=0.154 Sum_probs=192.2
Q ss_pred ccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEEeCCCCeEE--ecCCcEEEeeCCCCCC
Q 043350 110 PFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIACTDTQLWA--GQECGVRFWNLEDSYE 187 (1133)
Q Consensus 110 ~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~s~dg~lla--s~Dg~VrvWdl~~~~~ 187 (1133)
.+.+++++|++|+.||.|++|+..+ ++. ...+.+|.. .|.+++. ++.+++ +.||+|++||+.+...
T Consensus 138 ~~~~d~~~l~~g~~dg~i~iwd~~~---~~~-~~~~~~h~~-------~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDNTIKIWDKNT---LEC-KRILTGHTG-------SVLCLQY-DERVIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSS---CCE-EEEECCCSS-------CEEEEEC-CSSEEEEEETTSCEEEEESSSCCE
T ss_pred EEEECCCEEEEEeCCCeEEEEeCCC---CeE-EEEEcCCCC-------cEEEEEE-CCCEEEEEcCCCeEEEEECCCCcE
Confidence 3566999999999999999999874 444 888999998 8988886 566666 8899999999976422
Q ss_pred cCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEE
Q 043350 188 PGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLA 267 (1133)
Q Consensus 188 ~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~s 267 (1133)
......|..+|.+++|+ +..|++|+.||+|++||+.... .......+.+|...|.+
T Consensus 206 -----------------~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~v~~ 261 (435)
T 1p22_A 206 -----------------LNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPT-----DITLRRVLVGHRAAVNV 261 (435)
T ss_dssp -----------------EEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSS-----CCEEEEEECCCSSCEEE
T ss_pred -----------------EEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCC-----CceeeeEecCCCCcEEE
Confidence 12345688899999997 4599999999999999998622 12333577899999999
Q ss_pred EEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceE
Q 043350 268 MIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARAR 346 (1133)
Q Consensus 268 l~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~ 346 (1133)
++| +++ |++|+.||+|++||+++.
T Consensus 262 ~~~--~~~~l~s~~~dg~i~vwd~~~~----------------------------------------------------- 286 (435)
T 1p22_A 262 VDF--DDKYIVSASGDRTIKVWNTSTC----------------------------------------------------- 286 (435)
T ss_dssp EEE--ETTEEEEEETTSEEEEEETTTC-----------------------------------------------------
T ss_pred EEe--CCCEEEEEeCCCeEEEEECCcC-----------------------------------------------------
Confidence 999 567 999999999999998642
Q ss_pred EEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEE
Q 043350 347 VWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRR 426 (1133)
Q Consensus 347 vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~ 426 (1133)
+.+..+.+|...+.++.++ +.+ +++|+.|++|+.|+.+.... +.
T Consensus 287 -----------------~~~~~~~~~~~~v~~~~~~--~~~---------l~~g~~dg~i~iwd~~~~~~-------~~- 330 (435)
T 1p22_A 287 -----------------EFVRTLNGHKRGIACLQYR--DRL---------VVSGSSDNTIRLWDIECGAC-------LR- 330 (435)
T ss_dssp -----------------CEEEEEECCSSCEEEEEEE--TTE---------EEEEETTSCEEEEETTTCCE-------EE-
T ss_pred -----------------cEEEEEcCCCCcEEEEEeC--CCE---------EEEEeCCCeEEEEECCCCCE-------EE-
Confidence 2233334444445555442 334 55555555555333221110 00
Q ss_pred EEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCC---------eeEEEecCCcceeEEecCCCEEEEE
Q 043350 427 VATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGN---------RVSDILHHQCAVQCFCTYGSRMYVG 495 (1133)
Q Consensus 427 v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~---------~l~~~~~h~~~V~~fs~dg~~Lasg 495 (1133)
.+.+|...|.++++ ++ +|++|+.||.|++||+ .+. ++..+..|...|.++..++.+|++|
T Consensus 331 -------~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~ 401 (435)
T 1p22_A 331 -------VLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSS 401 (435)
T ss_dssp -------EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEEC
T ss_pred -------EEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEE
Confidence 02244455556655 44 7999999999999998 333 7889999999999977799999999
Q ss_pred ecCCeEEEEeCCCCc
Q 043350 496 YVSGYLQILDLDGNL 510 (1133)
Q Consensus 496 s~DG~I~vwd~~g~~ 510 (1133)
+.||+|++||+....
T Consensus 402 s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 402 SHDDTILIWDFLNDP 416 (435)
T ss_dssp CSSSEEEEEC-----
T ss_pred eCCCEEEEEECCCCC
Confidence 999999999997643
No 102
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.1e-24 Score=251.40 Aligned_cols=245 Identities=13% Similarity=0.091 Sum_probs=196.2
Q ss_pred eeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeC--Cc-EEEEeCCC
Q 043350 207 YESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQ--GD-LWSGGEGG 283 (1133)
Q Consensus 207 ~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~--g~-L~Sgs~Dg 283 (1133)
++.+|..+|.|++|+|++++|++|+.||.|+||++.... .+....+.+|.+.|++++|+++ ++ |++|+.||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc------ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 466899999999999999999999999999999997411 2556688899999999999977 77 99999999
Q ss_pred cEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCC
Q 043350 284 VIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSK 363 (1133)
Q Consensus 284 tI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg 363 (1133)
+|++||+.+.. .
T Consensus 80 ~v~iwd~~~~~--------------------------------------------------------------------~ 91 (379)
T 3jrp_A 80 KVLIWKEENGR--------------------------------------------------------------------W 91 (379)
T ss_dssp CEEEEEEETTE--------------------------------------------------------------------E
T ss_pred EEEEEEcCCCc--------------------------------------------------------------------e
Confidence 99999874210 0
Q ss_pred ceeEEEecCCcceeEEEeCCC--CCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCC
Q 043350 364 ELLKVFNIEGHIENRVDTQSV--QDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKR 441 (1133)
Q Consensus 364 ~~l~~~~~h~~~v~~l~~sp~--g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~ 441 (1133)
..+..+..|...|.+++|+|+ +.+ +++++.|+.|+.|+.+.... ..... +..|...
T Consensus 92 ~~~~~~~~~~~~v~~~~~~~~~~~~~---------l~~~~~d~~i~v~d~~~~~~-------~~~~~------~~~~~~~ 149 (379)
T 3jrp_A 92 SQIAVHAVHSASVNSVQWAPHEYGPL---------LLVASSDGKVSVVEFKENGT-------TSPII------IDAHAIG 149 (379)
T ss_dssp EEEEEECCCSSCEEEEEECCGGGCSE---------EEEEETTSEEEEEECCTTSC-------CCEEE------EECCTTC
T ss_pred eEeeeecCCCcceEEEEeCCCCCCCE---------EEEecCCCcEEEEecCCCCc-------eeeEE------ecCCCCc
Confidence 133455667888999999999 888 99999999998555432111 00111 2356667
Q ss_pred EEEEEECC-------------CC-eEEEEecCCeEEEEeCC-CC----eeEEEecCCcceeE--EecC---CCEEEEEec
Q 043350 442 TEAMVLTA-------------DG-MIWSGCTNGLLVQWDGN-GN----RVSDILHHQCAVQC--FCTY---GSRMYVGYV 497 (1133)
Q Consensus 442 V~sl~~sp-------------dg-~L~sgs~DG~I~vWd~~-g~----~l~~~~~h~~~V~~--fs~d---g~~Lasgs~ 497 (1133)
|.+++|+| ++ .|++|+.||.|++||+. +. ++..+..|...|.+ |+|+ +++|++|+.
T Consensus 150 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~ 229 (379)
T 3jrp_A 150 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 229 (379)
T ss_dssp EEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred eEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC
Confidence 77777777 57 99999999999999983 32 45677889999998 9999 899999999
Q ss_pred CCeEEEEeCCCC------cceeeeccccCeEEeeec--ccceeeecccCCeeeccccC
Q 043350 498 SGYLQILDLDGN------LTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 498 DG~I~vwd~~g~------~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s 547 (1133)
||.|++||+... .+.....|...|++++|+ +++|++++.||.|++|++..
T Consensus 230 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 230 DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 999999999752 222334588999999998 88999999999999999875
No 103
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.93 E-value=9e-24 Score=237.82 Aligned_cols=271 Identities=14% Similarity=0.133 Sum_probs=198.8
Q ss_pred EEEEE-eCCCCeEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeE
Q 043350 159 LRNIA-CTDTQLWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKI 236 (1133)
Q Consensus 159 V~~v~-s~dg~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V 236 (1133)
+..|+ |+++ +|| +.|++|+|||+.+..... .+....|...|.|++|+|++++|++|+.||+|
T Consensus 28 ~~~l~WS~~~-~lAvg~D~tV~iWd~~tg~~~~---------------~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v 91 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVALDNSVYLWSASSGDILQ---------------LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEV 91 (318)
T ss_dssp CBCEEECTTS-EEEEEETTEEEEEETTTCCEEE---------------EEECCSTTCCEEEEEECTTSSEEEEEETTSEE
T ss_pred ceEEEECCCC-EEEEEeCCEEEEEECCCCCEEE---------------EEEecCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence 45677 7776 677 899999999988642210 12234577789999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCcee---eEeCCCCceEEEEeec
Q 043350 237 RSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKS---LSLKPEEKHMAALLVE 312 (1133)
Q Consensus 237 ~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~---l~~~~~~~~l~s~~~d 312 (1133)
++|++.. .+.+..+.+|...+.++.+ ++. |++|+.++.+++|+....... +..+.....
T Consensus 92 ~iw~~~~--------~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 154 (318)
T 4ggc_A 92 QLWDVQQ--------QKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC------- 154 (318)
T ss_dssp EEEETTT--------TEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE-------
T ss_pred EEeecCC--------ceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceE-------
Confidence 9999986 1556788899998887654 567 999999999999998763222 111222211
Q ss_pred ceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCce----eEEEecCCcceeEEEeCCCCCcc
Q 043350 313 RSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKEL----LKVFNIEGHIENRVDTQSVQDQP 388 (1133)
Q Consensus 313 ~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~----l~~~~~h~~~v~~l~~sp~g~~~ 388 (1133)
... ..++...++++ +.|+.|++||+++++. ......+...+..+.++|++..
T Consensus 155 --~~~-------------~~~~~~~l~s~--------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~- 210 (318)
T 4ggc_A 155 --GLR-------------WAPDGRHLASG--------GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN- 210 (318)
T ss_dssp --EEE-------------ECTTSSEEEEE--------ETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTT-
T ss_pred --EEE-------------EcCCCCEEEEE--------ecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCc-
Confidence 111 11222334444 7899999999997763 3556677788999999998765
Q ss_pred ccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEE--ecCCeEEEE
Q 043350 389 VEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSG--CTNGLLVQW 465 (1133)
Q Consensus 389 ~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sg--s~DG~I~vW 465 (1133)
.+.+++++.+++|+.|+.+...... ...+...+..+.+++++ .++++ +.||.|++|
T Consensus 211 -----~~~~~~~~~~~~i~lwd~~~~~~~~----------------~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iw 269 (318)
T 4ggc_A 211 -----VLATGGGTSDRHIRIWNVCSGACLS----------------AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIW 269 (318)
T ss_dssp -----EEEEEECTTTCEEEEEETTTCCEEE----------------EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEE
T ss_pred -----EEEEEecCCCCEEEEEecccccccc----------------cccceeeeeeeeecccccceEEEEEcCCCEEEEE
Confidence 1125678888988755543222110 12344567778888888 55554 489999999
Q ss_pred eC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCC
Q 043350 466 DG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 466 d~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~ 507 (1133)
|+ +++++.++.+|...|++ |+|+|++|++|+.||+|+|||+.
T Consensus 270 d~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 270 KYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 99 77999999999999999 99999999999999999999985
No 104
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.92 E-value=2.9e-24 Score=254.61 Aligned_cols=315 Identities=13% Similarity=0.150 Sum_probs=207.4
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC---CCCCCcccccccccCC------------CCeEEEEEeeCC-
Q 043350 211 NTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLD---DANNPFKEGLSWQAHR------------GPVLAMIFSSQG- 274 (1133)
Q Consensus 211 h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~---~~~~~~~~~~~l~gH~------------~~V~sl~fsp~g- 274 (1133)
+..+|+|++|+|++++||+|+.||.|+||++..... .....++....+.+|. +.|++++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 567899999999999999999999999999886321 0112233566788998 899999999998
Q ss_pred -c-EEEEeCCCcEEEEeCCCCceeeE---eCCCCceEEEEeec---------ceEEEccCceeeecc-ccCCCCCeEEEE
Q 043350 275 -D-LWSGGEGGVIKIWPWESIEKSLS---LKPEEKHMAALLVE---------RSFIDLRAQVTVNGA-CSISSTEIKCML 339 (1133)
Q Consensus 275 -~-L~Sgs~DgtI~iWdl~~~~~~l~---~~~~~~~l~s~~~d---------~s~~d~~~~~~v~~~-~~~~~~~~~~l~ 339 (1133)
. |++++.|++|++|++........ .......+...... ...+... ..+...+ ..+...-..+..
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVE-ASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEE-EEEEEEECSCCSSCCCEEEE
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeee-ccceEEeccCCCcceEEEEE
Confidence 6 99999999999999875211100 00000000000000 0000000 0000000 111111122223
Q ss_pred ecCCceEEEecCCCceeEeecC-CCceeEE-------EecCCcceeEEEeCCCC-CccccccceEEEEeeCCCCcccccc
Q 043350 340 SDHARARVWCAQPLSFSLWDAR-SKELLKV-------FNIEGHIENRVDTQSVQ-DQPVEDEMKVKFVSSNKKEKPHGFL 410 (1133)
Q Consensus 340 S~d~~i~vwss~d~~I~lWD~~-tg~~l~~-------~~~h~~~v~~l~~sp~g-~~~~e~e~~v~lasgs~Dg~i~~~~ 410 (1133)
+.++...+. +.|+.|++||+. .++.+.. +..|...|++++|+|++ .+ |++|+.|++|+.|+
T Consensus 186 ~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~---------l~s~~~dg~i~iwd 255 (447)
T 3dw8_B 186 NSDYETYLS-ADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNT---------FVYSSSKGTIRLCD 255 (447)
T ss_dssp CTTSSEEEE-ECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTE---------EEEEETTSCEEEEE
T ss_pred cCCCCEEEE-eCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcE---------EEEEeCCCeEEEEE
Confidence 334443333 368999999998 4555553 45788899999999998 88 99999999998666
Q ss_pred cccc-------ceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-C-CCeeEEEecCCc
Q 043350 411 QRSR-------NAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-N-GNRVSDILHHQC 480 (1133)
Q Consensus 411 ~~~~-------~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~-g~~l~~~~~h~~ 480 (1133)
.+.. ..+.++... .....+.+|...|.+++|+|+| +|++++. |.|++||+ . ++++..+..|..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~ 328 (447)
T 3dw8_B 256 MRASALCDRHSKLFEEPEDP------SNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEY 328 (447)
T ss_dssp TTTCSSSCTTCEEECCC-----------CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGG
T ss_pred CcCCccccceeeEeccCCCc------cccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccc
Confidence 4422 222222211 0001133455689999999999 8999888 99999999 3 788888888864
Q ss_pred ce-----------------eEEecCCCEEEEEecCCeEEEEeCCCCcceeeecc--------------------------
Q 043350 481 AV-----------------QCFCTYGSRMYVGYVSGYLQILDLDGNLTASWIAH-------------------------- 517 (1133)
Q Consensus 481 ~V-----------------~~fs~dg~~Lasgs~DG~I~vwd~~g~~l~~~~~H-------------------------- 517 (1133)
.+ .+|+|++++|++|+.||.|++||+.......+.+|
T Consensus 329 ~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (447)
T 3dw8_B 329 LRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEI 408 (447)
T ss_dssp GTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCE
T ss_pred ccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccc
Confidence 33 35999999999999999999999985433343333
Q ss_pred -------ccCeEEeeec--ccceeeecccCCeeecc
Q 043350 518 -------SSPVLKLAVG--VDHIYSLAAHGGIRGWT 544 (1133)
Q Consensus 518 -------~~~V~~l~fs--~~~L~S~s~Dg~I~lW~ 544 (1133)
...|..++|+ +.+|++++.++ +.+|.
T Consensus 409 ~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 409 SVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp EGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred cccccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence 4578899999 77787777665 77776
No 105
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.92 E-value=1.4e-23 Score=246.35 Aligned_cols=275 Identities=11% Similarity=0.096 Sum_probs=202.3
Q ss_pred eCCCCeEE---ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEE
Q 043350 164 CTDTQLWA---GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC-GNRLVWTGHKDGKIRSW 239 (1133)
Q Consensus 164 s~dg~lla---s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vW 239 (1133)
+++...++ +.||.|+||++......... .....+|.++|++++|+| ++++|++|+.||+|+||
T Consensus 43 ~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~-------------~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw 109 (402)
T 2aq5_A 43 NPKFMALICEASGGGAFLVLPLGKTGRVDKN-------------VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVW 109 (402)
T ss_dssp CSSEEEEEBCCSSSCCEEEEETTCCEECCTT-------------CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEE
T ss_pred CCCeEEEEEEEcCCCEEEEEECccCCCCCCC-------------CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEE
Confidence 44444343 67999999998652111000 123457889999999999 99999999999999999
Q ss_pred eCCCCCCCCCCCcccccccccCCCCeEEEEEeeCC-c-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEE
Q 043350 240 KMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQG-D-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFID 317 (1133)
Q Consensus 240 d~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g-~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d 317 (1133)
++..+... ......+..+.+|...|++++|+|++ . |++|+.||+|++||+++
T Consensus 110 ~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~------------------------- 163 (402)
T 2aq5_A 110 EIPDGGLV-LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT------------------------- 163 (402)
T ss_dssp ECCTTCCS-SCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT-------------------------
T ss_pred EccCCCCc-cccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC-------------------------
Confidence 99863210 00113466788999999999999998 5 99999999999998743
Q ss_pred ccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEE--ecCCcceeEEEeCCCCCccccccceE
Q 043350 318 LRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVF--NIEGHIENRVDTQSVQDQPVEDEMKV 395 (1133)
Q Consensus 318 ~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~--~~h~~~v~~l~~sp~g~~~~e~e~~v 395 (1133)
++.+..+ ..|...|.+++|+|++.+
T Consensus 164 ---------------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~-------- 190 (402)
T 2aq5_A 164 ---------------------------------------------GAAVLTLGPDVHPDTIYSVDWSRDGAL-------- 190 (402)
T ss_dssp ---------------------------------------------TEEEEEECTTTCCSCEEEEEECTTSSC--------
T ss_pred ---------------------------------------------CCccEEEecCCCCCceEEEEECCCCCE--------
Confidence 3334455 567888999999999999
Q ss_pred EEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCC-EEEEEECCCC-eEEEE---ecCCeEEEEeCCC-
Q 043350 396 KFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKR-TEAMVLTADG-MIWSG---CTNGLLVQWDGNG- 469 (1133)
Q Consensus 396 ~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~-V~sl~~spdg-~L~sg---s~DG~I~vWd~~g- 469 (1133)
|++++.|++|+.|+.+.... +.. +. ..|... +.++.|+|++ +|++| +.|+.|++||+..
T Consensus 191 -l~~~~~d~~i~iwd~~~~~~-------~~~--~~-----~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 191 -ICTSCRDKRVRVIEPRKGTV-------VAE--KD-----RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHL 255 (402)
T ss_dssp -EEEEETTSEEEEEETTTTEE-------EEE--EE-----CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBC
T ss_pred -EEEEecCCcEEEEeCCCCce-------eee--ec-----cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccc
Confidence 99999999998666543221 111 10 234443 7888899999 88888 7999999999943
Q ss_pred Ce-eEEEe-cCCcceeE--EecCCCEEEE-EecCCeEEEEeCCC-Cc-ceeeecc--ccCeEEeeec--ccceeeecccC
Q 043350 470 NR-VSDIL-HHQCAVQC--FCTYGSRMYV-GYVSGYLQILDLDG-NL-TASWIAH--SSPVLKLAVG--VDHIYSLAAHG 538 (1133)
Q Consensus 470 ~~-l~~~~-~h~~~V~~--fs~dg~~Las-gs~DG~I~vwd~~g-~~-l~~~~~H--~~~V~~l~fs--~~~L~S~s~Dg 538 (1133)
.. +.... .|...|.+ |+|++++|++ |+.||.|++||+.. ++ +..+..| ..+|.+++|+ +.+++ +.|+
T Consensus 256 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~--s~~~ 333 (402)
T 2aq5_A 256 EEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEV--NKCE 333 (402)
T ss_dssp SSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCG--GGTE
T ss_pred cCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccce--ecce
Confidence 32 33333 35666776 9999999964 55799999999985 32 5555554 5999999999 44444 5677
Q ss_pred CeeeccccC
Q 043350 539 GIRGWTFTS 547 (1133)
Q Consensus 539 ~I~lW~l~s 547 (1133)
.+++|++..
T Consensus 334 ~~~~~~l~~ 342 (402)
T 2aq5_A 334 IARFYKLHE 342 (402)
T ss_dssp EEEEEEEET
T ss_pred eEEEEEcCC
Confidence 999999875
No 106
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.92 E-value=6.5e-24 Score=251.63 Aligned_cols=321 Identities=11% Similarity=0.113 Sum_probs=202.9
Q ss_pred ccccCCCCCEEEEecCCCeEEeccCCCCCC------C-CCCeeeeccCCCc-----cccccceEEEEE-eCCC--CeEE-
Q 043350 108 HKPFQPMVEFIGSGGGTGIFKVPSRAAVHP------G-RPPCLELRPHPLK-----ETQAGRFLRNIA-CTDT--QLWA- 171 (1133)
Q Consensus 108 ~~~~~p~g~~lasgs~dg~irlW~~~~~~~------g-~~~~~~l~~H~~~-----~~~~g~~V~~v~-s~dg--~lla- 171 (1133)
.+.|+|+|++||+|+.||.|+||+...... + ..+...+.+|... .......|.+++ ++++ .+++
T Consensus 33 ~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s 112 (447)
T 3dw8_B 33 TVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLL 112 (447)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEE
Confidence 478999999999999999999999874210 0 0026678889710 000001799999 8876 4555
Q ss_pred -ecCCcEEEeeCCCCCC-----cCcCCCccccC-CC--CCCCc---------------eeeccCCCCeEEEEEeCCCCEE
Q 043350 172 -GQECGVRFWNLEDSYE-----PGAGIGGRVRR-GD--EDAAP---------------FYESANTSPTMCLMVDCGNRLV 227 (1133)
Q Consensus 172 -s~Dg~VrvWdl~~~~~-----~~~gh~~~v~~-g~--~~~~~---------------~~~~~h~s~V~~la~spd~~~L 227 (1133)
+.|++|++||+..... .+..+.+.+.. .. ....+ .....|..+|.+++|+|++++|
T Consensus 113 ~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 192 (447)
T 3dw8_B 113 STNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETY 192 (447)
T ss_dssp EECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEE
T ss_pred eCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEE
Confidence 8999999999875111 01111110000 00 00000 1135689999999999999999
Q ss_pred EEEeCCCeEEEEeCCCCCCCCCCCccccc-------ccccCCCCeEEEEEeeCC-c-EEEEeCCCcEEEEeCCCCceeeE
Q 043350 228 WTGHKDGKIRSWKMDQTLDDANNPFKEGL-------SWQAHRGPVLAMIFSSQG-D-LWSGGEGGVIKIWPWESIEKSLS 298 (1133)
Q Consensus 228 aSgs~Dg~V~vWd~~~~~~~~~~~~~~~~-------~l~gH~~~V~sl~fsp~g-~-L~Sgs~DgtI~iWdl~~~~~~l~ 298 (1133)
++| .|++|++||+.... .... .+.+|...|++++|+|++ . |++|+.||+|++||+++.....
T Consensus 193 ~s~-~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~- 263 (447)
T 3dw8_B 193 LSA-DDLRINLWHLEITD-------RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD- 263 (447)
T ss_dssp EEE-CSSEEEEEETTEEE-------EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC-
T ss_pred EEe-CCCeEEEEECCCCC-------ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc-
Confidence 999 79999999998311 1111 477999999999999998 7 9999999999999997521100
Q ss_pred eCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCC-CceeEEEecCCccee
Q 043350 299 LKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARS-KELLKVFNIEGHIEN 377 (1133)
Q Consensus 299 ~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~t-g~~l~~~~~h~~~v~ 377 (1133)
..+..+.... ......+..|...|.
T Consensus 264 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~ 289 (447)
T 3dw8_B 264 ------------------------------------------------------RHSKLFEEPEDPSNRSFFSEIISSIS 289 (447)
T ss_dssp ------------------------------------------------------TTCEEECCC-----CCHHHHHTTCEE
T ss_pred ------------------------------------------------------ceeeEeccCCCccccccccccCceEE
Confidence 0000000000 000112334556899
Q ss_pred EEEeCCCCCccccccceEEEEeeCCCCcccccccc----ccceeeccCCceEEEEEecCCccc-CCCCCEEEEEECCCC-
Q 043350 378 RVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQR----SRNAIMGAADAVRRVATRGAGAFV-DDTKRTEAMVLTADG- 451 (1133)
Q Consensus 378 ~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~----~~~~~~~~~~~V~~v~~~p~g~~~-~h~~~V~sl~~spdg- 451 (1133)
+++|+|++.+ |++++. +.|+.|+.+ ....+.+|...+..+... +. ..-..+..++|+|++
T Consensus 290 ~~~~s~~g~~---------l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~i~~~~~~~~s~~~~ 355 (447)
T 3dw8_B 290 DVKFSHSGRY---------MMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSL----YENDCIFDKFECCWNGSDS 355 (447)
T ss_dssp EEEECTTSSE---------EEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHH----HHTSGGGCCCCEEECTTSS
T ss_pred EEEECCCCCE---------EEEeeC-CeEEEEeCCCCccccceeecccccccccccc----ccccccccceEEEECCCCC
Confidence 9999999999 999999 999866543 223333332110000000 00 000012348899999
Q ss_pred eEEEEecCCeEEEEeCCCCeeEEEecC---------------------------------CcceeE--EecCCCEEEEEe
Q 043350 452 MIWSGCTNGLLVQWDGNGNRVSDILHH---------------------------------QCAVQC--FCTYGSRMYVGY 496 (1133)
Q Consensus 452 ~L~sgs~DG~I~vWd~~g~~l~~~~~h---------------------------------~~~V~~--fs~dg~~Lasgs 496 (1133)
+|++|+.||.|++||+.......+..| ...|.+ |+|++.+||+|+
T Consensus 356 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~ 435 (447)
T 3dw8_B 356 VVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVAT 435 (447)
T ss_dssp EEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEEC
T ss_pred EEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEe
Confidence 999999999999999955333344433 234544 999999999998
Q ss_pred cCCeEEEEeC
Q 043350 497 VSGYLQILDL 506 (1133)
Q Consensus 497 ~DG~I~vwd~ 506 (1133)
.++ +++|..
T Consensus 436 ~~~-~~~~~~ 444 (447)
T 3dw8_B 436 TNN-LYIFQD 444 (447)
T ss_dssp SSC-EEEEEC
T ss_pred cce-eeeecc
Confidence 876 788864
No 107
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.4e-23 Score=242.03 Aligned_cols=250 Identities=8% Similarity=0.096 Sum_probs=194.7
Q ss_pred eeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEE
Q 043350 142 CLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCL 218 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~l 218 (1133)
+..+++|.. .|++++ ++++++|+ +.|+.|++|++....... ......|..+|.|+
T Consensus 4 ~~~~~~h~~-------~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~---------------~~~~~~h~~~v~~~ 61 (379)
T 3jrp_A 4 VVIANAHNE-------LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKL---------------IDTLTGHEGPVWRV 61 (379)
T ss_dssp -CCEEECCC-------CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEE---------------EEEECCCSSCEEEE
T ss_pred cEEecCCcc-------cEEEEEEcCCCCEEEEEECCCcEEEEecCCCccee---------------eeEecCCCCcEEEE
Confidence 567889999 999999 99999988 679999999987421110 22455788899999
Q ss_pred EEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeC--Cc-EEEEeCCCcEEEEeCCCC
Q 043350 219 MVDCG--NRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQ--GD-LWSGGEGGVIKIWPWESI 293 (1133)
Q Consensus 219 a~spd--~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~--g~-L~Sgs~DgtI~iWdl~~~ 293 (1133)
+|+++ +++|++|+.||.|++||+..+. ......+.+|...|++++|+|+ +. |++++.|+.|++||+...
T Consensus 62 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 135 (379)
T 3jrp_A 62 DWAHPKFGTILASCSYDGKVLIWKEENGR------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN 135 (379)
T ss_dssp EECCGGGCSEEEEEETTSCEEEEEEETTE------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTT
T ss_pred EeCCCCCCCEEEEeccCCEEEEEEcCCCc------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCC
Confidence 99986 9999999999999999998621 1356678889999999999999 88 999999999999998641
Q ss_pred ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCC
Q 043350 294 EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEG 373 (1133)
Q Consensus 294 ~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~ 373 (1133)
. ......+..|.
T Consensus 136 ~--------------------------------------------------------------------~~~~~~~~~~~ 147 (379)
T 3jrp_A 136 G--------------------------------------------------------------------TTSPIIIDAHA 147 (379)
T ss_dssp S--------------------------------------------------------------------CCCEEEEECCT
T ss_pred C--------------------------------------------------------------------ceeeEEecCCC
Confidence 0 01112344567
Q ss_pred cceeEEEeCC-------------CCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCC
Q 043350 374 HIENRVDTQS-------------VQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTK 440 (1133)
Q Consensus 374 ~~v~~l~~sp-------------~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~ 440 (1133)
..|.+++|+| ++.+ +++++.|+.|+.|+.+... ....+.. .+.+|..
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~---------l~~~~~dg~i~i~d~~~~~-------~~~~~~~----~~~~h~~ 207 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRK---------FVTGGADNLVKIWKYNSDA-------QTYVLES----TLEGHSD 207 (379)
T ss_dssp TCEEEEEECCCC----------CTTCE---------EEEEETTSCEEEEEEETTT-------TEEEEEE----EECCCSS
T ss_pred CceEEEEEcCccccccccccCCCCCCE---------EEEEeCCCeEEEEEecCCC-------cceeeEE----EEecccC
Confidence 7788888888 5788 9999999999866543211 1111111 1457888
Q ss_pred CEEEEEECCC---C-eEEEEecCCeEEEEeCCC-C---eeEEE--ecCCcceeE--EecCCCEEEEEecCCeEEEEeCC
Q 043350 441 RTEAMVLTAD---G-MIWSGCTNGLLVQWDGNG-N---RVSDI--LHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 441 ~V~sl~~spd---g-~L~sgs~DG~I~vWd~~g-~---~l~~~--~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~ 507 (1133)
.|.+++|+|+ + +|++++.||.|++||+.. . ....+ ..|...|++ |+|+|++|++++.||.|++|++.
T Consensus 208 ~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 208 WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 9999999999 8 999999999999999943 2 22222 337888887 99999999999999999999987
No 108
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.4e-25 Score=264.48 Aligned_cols=308 Identities=9% Similarity=0.016 Sum_probs=215.7
Q ss_pred CCCCCcccCCCCccccccCCCCcccccCCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCC
Q 043350 71 SDDDLFSNNSNVITTSGVPVNEDYVCPGPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPL 150 (1133)
Q Consensus 71 s~d~~~~~s~s~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~ 150 (1133)
|+|+..++++|.|.+.. .|.......+|+..+.. +.|+|+| .++++.+|+.+ +.. ...+ +|..
T Consensus 24 SpDG~~iASas~D~TV~-d~~~~~~l~gh~~~v~~---V~FsPdg-------~~~~~~~~~~~----~~~-~~~~-~~~~ 86 (588)
T 2j04_A 24 ARDGTLYLTTFPDISIG-QPKYAKDINCNSKNLFH---VKEFPLE-------FENKLDFELAQ----QNG-LLNS-QPVC 86 (588)
T ss_dssp CTTSCEEEECSSSEEEE-EECCCSCCSSBGGGTEE---EEEECCC-------CCCTTTTSCCC----SSC-SSTT-SCSC
T ss_pred CCCCCEEEEEcCCceee-cccccceecCCCccEEE---EEECCCC-------CcceEEEEeCC----Cce-Eeec-CCCC
Confidence 56899999999999885 33333333466555555 8899999 56776667654 333 2233 3444
Q ss_pred ccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEE
Q 043350 151 KETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLV 227 (1133)
Q Consensus 151 ~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~L 227 (1133)
.|.+++ +|+|++|| +.||.|++||.++....+. |. .......|.|++|||+|++|
T Consensus 87 -------~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~--------------~~~~~~sv~svafSPDG~~L 144 (588)
T 2j04_A 87 -------YPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLD-SK--------------GNLSSRTYHCFEWNPIESSI 144 (588)
T ss_dssp -------CEEEEEECSSSSCEEEEETTSCEEEEETTEEEEECC-CS--------------SCSTTTCEEEEEECSSSSCE
T ss_pred -------cEEEEEECCCCCEEEEEeCCCcEEEEeCCceeeecc-CC--------------CccccccEEEEEEcCCCCEE
Confidence 899999 99999999 9999999999766333322 22 00112359999999999999
Q ss_pred EEEeCCCeEEEEeCCCCCCCCCCCccccccc----ccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCCCCce-----eeE
Q 043350 228 WTGHKDGKIRSWKMDQTLDDANNPFKEGLSW----QAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWESIEK-----SLS 298 (1133)
Q Consensus 228 aSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l----~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~~~~~-----~l~ 298 (1133)
|+|+.||+|+||++..+.. ....+-.+.++ .+|.+.|.+++|+|+| |++++.|++|++|++.+... .+.
T Consensus 145 Asgs~DGtVkIWd~~~~~l-~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~ 222 (588)
T 2j04_A 145 VVGNEDGELQFFSIRKNSE-NTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQ 222 (588)
T ss_dssp EEEETTSEEEEEECCCCTT-TCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEE
T ss_pred EEEcCCCEEEEEECCCCcc-ccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeec
Confidence 9999999999999987210 00001123454 7788999999999999 99999999999999976431 111
Q ss_pred -eCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCccee
Q 043350 299 -LKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIEN 377 (1133)
Q Consensus 299 -~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~ 377 (1133)
.+.... ..+..+ + ..+++ +.+++|++||+.+++......+|...+.
T Consensus 223 ~~h~~~V--------------------~svaFs---g-~~LAS---------a~~~tIkLWd~~~~~~~~~~~gh~~~V~ 269 (588)
T 2j04_A 223 NASRRKI--------------------TDLKIV---D-YKVVL---------TCPGYVHKIDLKNYSISSLKTGSLENFH 269 (588)
T ss_dssp CCCSSCC--------------------CCEEEE---T-TEEEE---------ECSSEEEEEETTTTEEEEEECSCCSCCC
T ss_pred ccccCcE--------------------EEEEEE---C-CEEEE---------EeCCeEEEEECCCCeEEEEEcCCCceEE
Confidence 111111 111111 1 12222 2368999999988877544448999999
Q ss_pred EEEe--CCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEE
Q 043350 378 RVDT--QSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIW 454 (1133)
Q Consensus 378 ~l~~--sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~ 454 (1133)
.++| +|++.. +++++.+|+ +.|... .+.++|++ .++
T Consensus 270 ~va~~~s~d~~~---------La~a~edG~-klw~~d-------------------------------~~~~spd~~l~a 308 (588)
T 2j04_A 270 IIPLNHEKESTI---------LLMSNKTSY-KVLLED-------------------------------ELHVTADNIIAP 308 (588)
T ss_dssp EEEETTCSSCEE---------EEECSSCEE-EEEESS-------------------------------SEEEECCCSSHH
T ss_pred EEEeeeCCCCCE---------EEEEcCCCC-EEEeec-------------------------------cEEECCCceEEE
Confidence 9999 999988 999999998 533322 02356666 444
Q ss_pred EEecCCeEEEEeCCCCeeEEEecCCcceeE--EecCCCEEEEEe
Q 043350 455 SGCTNGLLVQWDGNGNRVSDILHHQCAVQC--FCTYGSRMYVGY 496 (1133)
Q Consensus 455 sgs~DG~I~vWd~~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs 496 (1133)
+ .|+++++|+..++.+..+.+ ...|.+ |+|||+.||+++
T Consensus 309 ~--~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 309 Y--LEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp H--HHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSEEEEEE
T ss_pred E--cCCEEEEEECCCCceeeecc-ceEEEEEEECCCCCEEEEEE
Confidence 4 39999999998877665555 667887 999999999987
No 109
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.92 E-value=2.3e-23 Score=237.28 Aligned_cols=290 Identities=7% Similarity=-0.025 Sum_probs=205.6
Q ss_pred CCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCC--CCeeeeccCCCccccccceEEEEE-eCCCC-eEE--
Q 043350 98 GPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGR--PPCLELRPHPLKETQAGRFLRNIA-CTDTQ-LWA-- 171 (1133)
Q Consensus 98 ~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~--~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~-lla-- 171 (1133)
+|...+.+ +.|+|++++|++|+.||.|++|+... +. .+...+.+|.. .|.+++ ++++. +++
T Consensus 9 ~h~~~v~~---~~~s~~~~~l~~~~~d~~v~iw~~~~---~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~l~~~ 75 (342)
T 1yfq_A 9 APKDYISD---IKIIPSKSLLLITSWDGSLTVYKFDI---QAKNVDLLQSLRYKH-------PLLCCNFIDNTDLQIYVG 75 (342)
T ss_dssp CCSSCEEE---EEEEGGGTEEEEEETTSEEEEEEEET---TTTEEEEEEEEECSS-------CEEEEEEEESSSEEEEEE
T ss_pred CCCCcEEE---EEEcCCCCEEEEEcCCCeEEEEEeCC---CCccccceeeeecCC-------ceEEEEECCCCCcEEEEE
Confidence 44444444 78899999999999999999999874 22 12455668887 899999 88898 677
Q ss_pred ecCCcEEEeeC-CCCCCcCcCCCccccCCCCCCCceeecc--CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCC
Q 043350 172 GQECGVRFWNL-EDSYEPGAGIGGRVRRGDEDAAPFYESA--NTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDA 248 (1133)
Q Consensus 172 s~Dg~VrvWdl-~~~~~~~~gh~~~v~~g~~~~~~~~~~~--h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~ 248 (1133)
+.|+.|++||+ .+... ..... |..+|.+++|+| +++|++|+.|+.|++||+.......
T Consensus 76 ~~dg~i~~wd~~~~~~~------------------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~ 136 (342)
T 1yfq_A 76 TVQGEILKVDLIGSPSF------------------QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGV 136 (342)
T ss_dssp ETTSCEEEECSSSSSSE------------------EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBC
T ss_pred cCCCeEEEEEeccCCce------------------EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccc
Confidence 78999999998 65311 13445 888999999999 9999999999999999986300000
Q ss_pred -CCCcccccccccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCCC-Ccee--eEeCCCCceEEEEeecceEEEccCceee
Q 043350 249 -NNPFKEGLSWQAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWES-IEKS--LSLKPEEKHMAALLVERSFIDLRAQVTV 324 (1133)
Q Consensus 249 -~~~~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~~-~~~~--l~~~~~~~~l~s~~~d~s~~d~~~~~~v 324 (1133)
....+.+..+. |...|.+++|+|++ |++++.|+.|++||++. .... ......... +
T Consensus 137 ~~~~~~~~~~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~------------------i 196 (342)
T 1yfq_A 137 IAVKNLNSNNTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQ------------------I 196 (342)
T ss_dssp EEEEESCSSSSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSC------------------E
T ss_pred ccccCCeeeEEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCc------------------e
Confidence 00012333444 88999999999877 99999999999999986 3211 111111111 1
Q ss_pred eccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCC------ceeEEEecCCcceeEEEeCCCCCccccccceEEEE
Q 043350 325 NGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSK------ELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFV 398 (1133)
Q Consensus 325 ~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg------~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~la 398 (1133)
..+...+. +...++++ +.|+.|++||+..+ +.+..+..|....
T Consensus 197 ~~i~~~~~-~~~~l~~~--------~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 245 (342)
T 1yfq_A 197 RDVALLPK-EQEGYACS--------SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL---------------------- 245 (342)
T ss_dssp EEEEECSG-GGCEEEEE--------ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT----------------------
T ss_pred eEEEECCC-CCCEEEEE--------ecCCcEEEEEEcCCCcccccccceeeecccccc----------------------
Confidence 11111120 22344444 67888999988765 3333333322100
Q ss_pred eeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEe
Q 043350 399 SSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDIL 476 (1133)
Q Consensus 399 sgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~ 476 (1133)
...+|...|.+++|+|++ +|++|+.||.|++||+ +++++..+.
T Consensus 246 -----------------------------------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 290 (342)
T 1yfq_A 246 -----------------------------------KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA 290 (342)
T ss_dssp -----------------------------------TCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred -----------------------------------cccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh
Confidence 012445567788888888 8999999999999999 578889999
Q ss_pred cC-CcceeEEecCCCEEEEEecCCe-EEEEe
Q 043350 477 HH-QCAVQCFCTYGSRMYVGYVSGY-LQILD 505 (1133)
Q Consensus 477 ~h-~~~V~~fs~dg~~Lasgs~DG~-I~vwd 505 (1133)
.| ...|.++.+++++|++|+.||+ .+.|.
T Consensus 291 ~~h~~~v~~~~~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 291 KFNEDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CCSSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred cccCCCceEecCCCCeEEEEecCCccccccc
Confidence 98 9999996699999999999998 55555
No 110
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.92 E-value=1.4e-23 Score=237.79 Aligned_cols=302 Identities=10% Similarity=0.015 Sum_probs=201.5
Q ss_pred cccCCCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eC--CCCeEE
Q 043350 95 VCPGPDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CT--DTQLWA 171 (1133)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~--dg~lla 171 (1133)
...+|...+.. +.|+|++++|++|+.||.|++|+.............+.+|.. .|.+++ ++ ++.+|+
T Consensus 6 ~~~gH~~~v~~---~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~d~~~l~ 75 (351)
T 3f3f_A 6 FDSGHDDLVHD---VVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDS-------SIVAIDWASPEYGRIIA 75 (351)
T ss_dssp EECCCSSCEEE---EEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSS-------CEEEEEECCGGGCSEEE
T ss_pred cCcccccceeE---EEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCC-------cEEEEEEcCCCCCCEEE
Confidence 34467776666 889999999999999999999998741111123567788988 999999 77 588887
Q ss_pred --ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCC
Q 043350 172 --GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCG--NRLVWTGHKDGKIRSWKMDQTLDD 247 (1133)
Q Consensus 172 --s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd--~~~LaSgs~Dg~V~vWd~~~~~~~ 247 (1133)
+.|+.|++||+........+. ..........|..+|.+++|+|+ +.+|++|+.||.|++||+.....
T Consensus 76 s~~~dg~v~vwd~~~~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~- 146 (351)
T 3f3f_A 76 SASYDKTVKLWEEDPDQEECSGR--------RWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSD- 146 (351)
T ss_dssp EEETTSCEEEEEECTTSCTTSSC--------SEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTC-
T ss_pred EEcCCCeEEEEecCCCccccccc--------CcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHH-
Confidence 889999999998742211000 00012345578899999999999 99999999999999999986332
Q ss_pred CCCCcc-------cccccccCCCCeEEEEEeeC---Cc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEE
Q 043350 248 ANNPFK-------EGLSWQAHRGPVLAMIFSSQ---GD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFI 316 (1133)
Q Consensus 248 ~~~~~~-------~~~~l~gH~~~V~sl~fsp~---g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~ 316 (1133)
...+. ......+|...|.+++|+|+ +. |++++.|+.+.+|+....
T Consensus 147 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~----------------------- 202 (351)
T 3f3f_A 147 -LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG----------------------- 202 (351)
T ss_dssp -TTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS-----------------------
T ss_pred -hccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC-----------------------
Confidence 00000 00112378899999999997 67 999999999977765321
Q ss_pred EccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCC----Ccccccc
Q 043350 317 DLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQ----DQPVEDE 392 (1133)
Q Consensus 317 d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g----~~~~e~e 392 (1133)
....+..+.+|...|++++|+|++ .+
T Consensus 203 ---------------------------------------------~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~----- 232 (351)
T 3f3f_A 203 ---------------------------------------------KLHVAAKLPGHKSLIRSISWAPSIGRWYQL----- 232 (351)
T ss_dssp ---------------------------------------------CEEEEEECCCCCSCEEEEEECCCSSCSSEE-----
T ss_pred ---------------------------------------------ceeeeeecCCCCcceeEEEECCCCCCcceE-----
Confidence 011234556788899999999998 67
Q ss_pred ceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eE----EEEecCCeEEEEeC
Q 043350 393 MKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MI----WSGCTNGLLVQWDG 467 (1133)
Q Consensus 393 ~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L----~sgs~DG~I~vWd~ 467 (1133)
|++|+.|++|+.|+.+........... ...+.....++.. .+ ..+.....+.+|+.
T Consensus 233 ----l~s~~~dg~i~iwd~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (351)
T 3f3f_A 233 ----IATGCKDGRIRIFKITEKLSPLASEES---------------LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSN 293 (351)
T ss_dssp ----EEEEETTSCEEEEEEEECC------------------------------------------------------CCS
T ss_pred ----EEEEcCCCeEEEEeCCCCcCccccCCc---------------ccceeccCCCcccccccccccccccceeeeeccc
Confidence 999999999986654422111000000 0011111111222 22 23334455666666
Q ss_pred -CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCC
Q 043350 468 -NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 468 -~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g 508 (1133)
..+++..+.+|...|++ |+|++++|++|+.||.|++||+..
T Consensus 294 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 294 LQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp EEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred ccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCc
Confidence 55788889999999998 999999999999999999999974
No 111
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.2e-23 Score=267.77 Aligned_cols=247 Identities=13% Similarity=0.083 Sum_probs=196.0
Q ss_pred eeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeC--Cc-EEEEeCCC
Q 043350 207 YESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQ--GD-LWSGGEGG 283 (1133)
Q Consensus 207 ~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~--g~-L~Sgs~Dg 283 (1133)
+..+|.++|+|++|+|++++|++|+.||+|+||++..+. ......+.+|.++|++++|+++ ++ |+||+.||
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~------~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE------EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC------CccceeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence 456889999999999999999999999999999987421 2566788999999999999988 78 99999999
Q ss_pred cEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCC
Q 043350 284 VIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSK 363 (1133)
Q Consensus 284 tI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg 363 (1133)
+|++||+.+. ..
T Consensus 78 ~I~vwd~~~~--------------------------------------------------------------------~~ 89 (753)
T 3jro_A 78 KVLIWKEENG--------------------------------------------------------------------RW 89 (753)
T ss_dssp CEEEEEEETT--------------------------------------------------------------------EE
T ss_pred eEEEEECCCC--------------------------------------------------------------------cc
Confidence 9999987421 01
Q ss_pred ceeEEEecCCcceeEEEeCCC--CCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCC
Q 043350 364 ELLKVFNIEGHIENRVDTQSV--QDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKR 441 (1133)
Q Consensus 364 ~~l~~~~~h~~~v~~l~~sp~--g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~ 441 (1133)
..+..+..|...|++++|+|+ +.. +++|+.||+|+.|+.+.... ..... +.+|...
T Consensus 90 ~~~~~~~~h~~~V~~v~~sp~~~~~~---------l~sgs~dg~I~vwdl~~~~~-------~~~~~------~~~~~~~ 147 (753)
T 3jro_A 90 SQIAVHAVHSASVNSVQWAPHEYGPL---------LLVASSDGKVSVVEFKENGT-------TSPII------IDAHAIG 147 (753)
T ss_dssp EEEEEECCCSSCEEEEEECCGGGCSE---------EEEEETTSEEEEEECCSSSC-------CCCEE------EECCSSC
T ss_pred cccccccCCCCCeEEEEECCCCCCCE---------EEEEeCCCcEEEEEeecCCC-------cceeE------eecCCCc
Confidence 133455678889999999999 888 99999999998655432110 00000 2345556
Q ss_pred EEEEEECC-------------CC-eEEEEecCCeEEEEeC-CC----CeeEEEecCCcceeE--EecC---CCEEEEEec
Q 043350 442 TEAMVLTA-------------DG-MIWSGCTNGLLVQWDG-NG----NRVSDILHHQCAVQC--FCTY---GSRMYVGYV 497 (1133)
Q Consensus 442 V~sl~~sp-------------dg-~L~sgs~DG~I~vWd~-~g----~~l~~~~~h~~~V~~--fs~d---g~~Lasgs~ 497 (1133)
|.++.++| ++ .|++|+.||.|++||+ .+ .++..+..|...|++ |+|+ +++|++|+.
T Consensus 148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~ 227 (753)
T 3jro_A 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 227 (753)
T ss_dssp EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES
T ss_pred eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec
Confidence 66666666 57 9999999999999998 34 456677889999998 9999 899999999
Q ss_pred CCeEEEEeCCCC------cceeeeccccCeEEeeec--ccceeeecccCCeeeccccCCC
Q 043350 498 SGYLQILDLDGN------LTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTSPS 549 (1133)
Q Consensus 498 DG~I~vwd~~g~------~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s~~ 549 (1133)
||+|++||+... .+....+|.+.|++++|+ +++|++++.||.|++|++....
T Consensus 228 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 228 DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 999999998753 344456799999999998 8899999999999999987543
No 112
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.90 E-value=1.3e-22 Score=237.85 Aligned_cols=282 Identities=10% Similarity=0.086 Sum_probs=207.0
Q ss_pred cccCCCCCE-EEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eC-CCCeEE--ecCCcEEEeeCC
Q 043350 109 KPFQPMVEF-IGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CT-DTQLWA--GQECGVRFWNLE 183 (1133)
Q Consensus 109 ~~~~p~g~~-lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~-dg~lla--s~Dg~VrvWdl~ 183 (1133)
..++|+... +++|+.||.|+||+......-......+.+|.. .|.+++ ++ ++.+|+ +.|++|++||+.
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~-------~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTA-------PVLDIAWCPHNDNVIASGSEDCTVMVWEIP 112 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSS-------CEEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCC-------CEEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence 555666544 446899999999997532111122556788988 999999 88 888888 789999999998
Q ss_pred CCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCCCCCCCccccccc--cc
Q 043350 184 DSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGN-RLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSW--QA 260 (1133)
Q Consensus 184 ~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~-~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l--~g 260 (1133)
........ ......+..|..+|.+++|+|++ .+|++|+.||+|++||+..+ +....+ .+
T Consensus 113 ~~~~~~~~----------~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~--------~~~~~~~~~~ 174 (402)
T 2aq5_A 113 DGGLVLPL----------REPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG--------AAVLTLGPDV 174 (402)
T ss_dssp TTCCSSCB----------CSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT--------EEEEEECTTT
T ss_pred CCCCcccc----------CCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC--------CccEEEecCC
Confidence 64211000 01133566799999999999997 69999999999999999861 445566 78
Q ss_pred CCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEE
Q 043350 261 HRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCML 339 (1133)
Q Consensus 261 H~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~ 339 (1133)
|.+.|++++|+|+|+ |++++.||.|++||+++
T Consensus 175 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~----------------------------------------------- 207 (402)
T 2aq5_A 175 HPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK----------------------------------------------- 207 (402)
T ss_dssp CCSCEEEEEECTTSSCEEEEETTSEEEEEETTT-----------------------------------------------
T ss_pred CCCceEEEEECCCCCEEEEEecCCcEEEEeCCC-----------------------------------------------
Confidence 999999999999999 99999999999999853
Q ss_pred ecCCceEEEecCCCceeEeecCCCceeEEE-ecCCcc-eeEEEeCCCCCccccccceEEEEee---CCCCcccccccccc
Q 043350 340 SDHARARVWCAQPLSFSLWDARSKELLKVF-NIEGHI-ENRVDTQSVQDQPVEDEMKVKFVSS---NKKEKPHGFLQRSR 414 (1133)
Q Consensus 340 S~d~~i~vwss~d~~I~lWD~~tg~~l~~~-~~h~~~-v~~l~~sp~g~~~~e~e~~v~lasg---s~Dg~i~~~~~~~~ 414 (1133)
++.+..+ ..|... +.++.|+|++.+ +++| +.|+.|+.|+.+..
T Consensus 208 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~g~~~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 208 -----------------------GTVVAEKDRPHEGTRPVHAVFVSEGKI---------LTTGFSRMSERQVALWDTKHL 255 (402)
T ss_dssp -----------------------TEEEEEEECSSCSSSCCEEEECSTTEE---------EEEEECTTCCEEEEEEETTBC
T ss_pred -----------------------CceeeeeccCCCCCcceEEEEcCCCcE---------EEEeccCCCCceEEEEcCccc
Confidence 2233334 345544 788999999988 9998 78999986654422
Q ss_pred ceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEE-EEecCCeEEEEeCC-CCe-eEEEec--CCcceeE--Ee
Q 043350 415 NAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIW-SGCTNGLLVQWDGN-GNR-VSDILH--HQCAVQC--FC 486 (1133)
Q Consensus 415 ~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~-sgs~DG~I~vWd~~-g~~-l~~~~~--h~~~V~~--fs 486 (1133)
.. .+... ...+...+.+++|+|++ .|+ +|+.||.|++|++. ++. +..+.. |...|.+ |+
T Consensus 256 ~~------~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~s 322 (402)
T 2aq5_A 256 EE------PLSLQ-------ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYM 322 (402)
T ss_dssp SS------CSEEE-------ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEEC
T ss_pred cC------CceEE-------eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEe
Confidence 11 01111 12355678889999999 665 56689999999994 442 555544 4578887 99
Q ss_pred cCCCEEEEEecCCeEEEEeCCCC
Q 043350 487 TYGSRMYVGYVSGYLQILDLDGN 509 (1133)
Q Consensus 487 ~dg~~Lasgs~DG~I~vwd~~g~ 509 (1133)
|++.++++ .++.+++|++...
T Consensus 323 p~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 323 PKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp CGGGSCGG--GTEEEEEEEEETT
T ss_pred ccccccee--cceeEEEEEcCCC
Confidence 99998764 5679999998753
No 113
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.90 E-value=2.4e-22 Score=230.41 Aligned_cols=294 Identities=9% Similarity=0.051 Sum_probs=208.1
Q ss_pred ccCCCCCCCCCcccccCCC---CCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE
Q 043350 96 CPGPDAADDQQQHKPFQPM---VEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA 171 (1133)
Q Consensus 96 ~~~~~~~~~~~~~~~~~p~---g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla 171 (1133)
..+|...+.. +.|+|+ |++|++|+.||.|++|+... .+......+.+|.. .|.+++ ++++++|+
T Consensus 35 ~~~h~~~v~~---~~~~~~~~~g~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~h~~-------~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 35 TSSPDDSIGC---LSFSPPTLPGNFLIAGSWANDVRCWEVQD--SGQTIPKAQQMHTG-------PVLDVCWSDDGSKVF 102 (368)
T ss_dssp SSCCSSCEEE---EEECCTTSSSEEEEEEETTSEEEEEEECT--TSCEEEEEEEECSS-------CEEEEEECTTSSEEE
T ss_pred ccCCCCceEE---EEEcCCCCCceEEEEECCCCcEEEEEcCC--CCceeEEEeccccC-------CEEEEEECcCCCEEE
Confidence 3466666655 888999 69999999999999999873 12332367888998 999999 99999888
Q ss_pred --ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEE--eCCCCEEEEEeCCCeEEEEeCCCCCCC
Q 043350 172 --GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMV--DCGNRLVWTGHKDGKIRSWKMDQTLDD 247 (1133)
Q Consensus 172 --s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~--spd~~~LaSgs~Dg~V~vWd~~~~~~~ 247 (1133)
+.|+.|++||+.+... .....|..+|.+++| ++++++|++|+.||.|++||+..+
T Consensus 103 s~~~dg~v~iwd~~~~~~------------------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--- 161 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQA------------------IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS--- 161 (368)
T ss_dssp EEETTSEEEEEETTTTEE------------------EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS---
T ss_pred EEcCCCcEEEEEcCCCCc------------------eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC---
Confidence 8899999999986421 124468889999999 889999999999999999999861
Q ss_pred CCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeec
Q 043350 248 ANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNG 326 (1133)
Q Consensus 248 ~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~ 326 (1133)
+.+..+..| ..+.++.+. +. +++++.|+.+++|+++.....+........ .......
T Consensus 162 -----~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 219 (368)
T 3mmy_A 162 -----NPMMVLQLP-ERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLK--------------HQHRCVA 219 (368)
T ss_dssp -----SCSEEEECS-SCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCS--------------SCEEEEE
T ss_pred -----cEEEEEecC-CCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhcccccc--------------CCCceEE
Confidence 334455555 466666665 45 888999999999999874333222111000 0000000
Q ss_pred cccCCCCCeEEEEecCCceEEEecCCCceeEeecCCC---ceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCC
Q 043350 327 ACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSK---ELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKK 403 (1133)
Q Consensus 327 ~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg---~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~D 403 (1133)
+..........++++ +.|+.|++||+... ..+..+..|.... . .
T Consensus 220 ~~~~~~~~~~~~~~~--------~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~----------~---------~------ 266 (368)
T 3mmy_A 220 IFKDKQNKPTGFALG--------SIEGRVAIHYINPPNPAKDNFTFKCHRSNG----------T---------N------ 266 (368)
T ss_dssp EEECTTSCEEEEEEE--------ETTSEEEEEESSCSCHHHHSEEEECSEEC----------------------------
T ss_pred EcccCCCCCCeEEEe--------cCCCcEEEEecCCCCccccceeeeeeeccc----------c---------c------
Confidence 001011122224445 77899999999866 3344444332110 0 0
Q ss_pred CccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcc
Q 043350 404 EKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCA 481 (1133)
Q Consensus 404 g~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~ 481 (1133)
....+|...|.+++|+|++ +|++|+.||.|++||+ +++++..+..|...
T Consensus 267 -----------------------------~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 317 (368)
T 3mmy_A 267 -----------------------------TSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQP 317 (368)
T ss_dssp ------------------------------CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSC
T ss_pred -----------------------------ccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCC
Confidence 0012334567788888988 9999999999999999 56889999999999
Q ss_pred eeE--EecCCCEEEEEecCCeEEEEeC
Q 043350 482 VQC--FCTYGSRMYVGYVSGYLQILDL 506 (1133)
Q Consensus 482 V~~--fs~dg~~Lasgs~DG~I~vwd~ 506 (1133)
|.+ |+|+|++|++|+.|+..+.|++
T Consensus 318 v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 318 ISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp EEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred ceEEEECCCCCeEEEEecccccccccc
Confidence 998 9999999999999986666654
No 114
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=7.6e-22 Score=235.43 Aligned_cols=233 Identities=11% Similarity=0.101 Sum_probs=171.7
Q ss_pred eEEEEE-eCCCCeE-E--ecCCcEEEeeCC--CCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEe
Q 043350 158 FLRNIA-CTDTQLW-A--GQECGVRFWNLE--DSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGH 231 (1133)
Q Consensus 158 ~V~~v~-s~dg~ll-a--s~Dg~VrvWdl~--~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs 231 (1133)
.|++++ ++++++| + +.|+.|++||+. +..... .+....|...|++++|+|++++|++|+
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~---------------~~~~~~~~~~v~~~~~sp~~~~l~~~~ 168 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLK---------------LRKRFCFSKRPNAISIAEDDTTVIIAD 168 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEE---------------EEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceee---------------eeecccCCCCceEEEEcCCCCEEEEEe
Confidence 699999 9999986 5 579999999987 321110 111124667899999999999999999
Q ss_pred CCCeEEEEeCCCCCCCCCCCcc-cccccccCCCCeEEEEEeeC---Cc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceE
Q 043350 232 KDGKIRSWKMDQTLDDANNPFK-EGLSWQAHRGPVLAMIFSSQ---GD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHM 306 (1133)
Q Consensus 232 ~Dg~V~vWd~~~~~~~~~~~~~-~~~~l~gH~~~V~sl~fsp~---g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l 306 (1133)
.||.|++|++..... .. ....+.+|...|++|+|+|+ ++ |++|+.|++|++||+.+
T Consensus 169 ~~g~v~~~~~~~~~~-----~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~-------------- 229 (450)
T 2vdu_B 169 KFGDVYSIDINSIPE-----EKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ-------------- 229 (450)
T ss_dssp TTSEEEEEETTSCCC-----SSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC--------------
T ss_pred CCCcEEEEecCCccc-----ccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC--------------
Confidence 999999999976222 12 34477899999999999999 88 99999999999998742
Q ss_pred EEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCC
Q 043350 307 AALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQD 386 (1133)
Q Consensus 307 ~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~ 386 (1133)
++.+..+
T Consensus 230 --------------------------------------------------------~~~~~~~----------------- 236 (450)
T 2vdu_B 230 --------------------------------------------------------CFIVDKW----------------- 236 (450)
T ss_dssp --------------------------------------------------------TTCEEEE-----------------
T ss_pred --------------------------------------------------------Cceeeee-----------------
Confidence 1111111
Q ss_pred ccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEE
Q 043350 387 QPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQW 465 (1133)
Q Consensus 387 ~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vW 465 (1133)
+.+|...|.+++|+ ++ +|++|+.|++|++|
T Consensus 237 ------------------------------------------------~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vw 267 (450)
T 2vdu_B 237 ------------------------------------------------LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAW 267 (450)
T ss_dssp ------------------------------------------------CCCCSSCEEEEEEC-STTEEEEEESSSEEEEE
T ss_pred ------------------------------------------------ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEE
Confidence 01233344555555 55 67788888888888
Q ss_pred eC-CCCeeEEEecC-------------------------CcceeE--EecCCCEEEEEe-cCCeEEEEeC--C-C---Cc
Q 043350 466 DG-NGNRVSDILHH-------------------------QCAVQC--FCTYGSRMYVGY-VSGYLQILDL--D-G---NL 510 (1133)
Q Consensus 466 d~-~g~~l~~~~~h-------------------------~~~V~~--fs~dg~~Lasgs-~DG~I~vwd~--~-g---~~ 510 (1133)
|+ .++++..+..+ ...|.+ ++|++++|++++ .|+.|++|++ . + +.
T Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~ 347 (450)
T 2vdu_B 268 DWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLAL 347 (450)
T ss_dssp ETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEE
T ss_pred ECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceee
Confidence 88 56777666532 234555 899999999999 8999999999 3 3 45
Q ss_pred ceeeeccccCeEEeeec-ccceeeecc-------cCCeeeccccC
Q 043350 511 TASWIAHSSPVLKLAVG-VDHIYSLAA-------HGGIRGWTFTS 547 (1133)
Q Consensus 511 l~~~~~H~~~V~~l~fs-~~~L~S~s~-------Dg~I~lW~l~s 547 (1133)
+..+.+| +.|.+++|+ +..+++++. +..|.+|.+..
T Consensus 348 ~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 348 KQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred ccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 6677788 899999999 556666543 45688888764
No 115
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.90 E-value=2.5e-23 Score=243.91 Aligned_cols=269 Identities=10% Similarity=-0.020 Sum_probs=173.0
Q ss_pred eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC--------CCCEEEEEeCC
Q 043350 164 CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC--------GNRLVWTGHKD 233 (1133)
Q Consensus 164 s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp--------d~~~LaSgs~D 233 (1133)
.+++.+++ +.|++|++||+........ + ....+.+|...|.+|+|+| ++++|||||.|
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~-~-----------~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNETIITQ-H-----------VLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETTEEEEE-E-----------EECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCcccee-e-----------eecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 44566777 8899999999876321100 0 0112457888999999998 78999999999
Q ss_pred CeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEee
Q 043350 234 GKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLV 311 (1133)
Q Consensus 234 g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~ 311 (1133)
++|+|||+..+ .++..+.+|..+|.+++|+|++. |++|+.|++|++||+.+.............
T Consensus 166 ~tv~~Wd~~~~--------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~------ 231 (393)
T 4gq1_A 166 CTLIIWRLTDE--------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELV------ 231 (393)
T ss_dssp SEEEEEEEETT--------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------C------
T ss_pred CeEEEEECCCC--------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCc------
Confidence 99999998641 45667788999999999999975 999999999999999864222111110000
Q ss_pred cceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeC-CCCCcccc
Q 043350 312 ERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQ-SVQDQPVE 390 (1133)
Q Consensus 312 d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~s-p~g~~~~e 390 (1133)
... .+.-++...........+|...+.++.|+ +++..
T Consensus 232 --------------------~~~-------------------~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~--- 269 (393)
T 4gq1_A 232 --------------------KNP-------------------WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSG--- 269 (393)
T ss_dssp --------------------SCC-------------------CSEEEESGGGC------CCSSSCSEEEEETTTTCE---
T ss_pred --------------------ccc-------------------eEEecccccceeeeecccccccceeeeeecCCCCE---
Confidence 000 00000001111112334677788888886 78888
Q ss_pred ccceEEEEeeCCCCcccccccc---ccceeeccCCceEEEEEecCCcccCCCCCEEEEEECC--CC-eEEEEecCCeEEE
Q 043350 391 DEMKVKFVSSNKKEKPHGFLQR---SRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTA--DG-MIWSGCTNGLLVQ 464 (1133)
Q Consensus 391 ~e~~v~lasgs~Dg~i~~~~~~---~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~sp--dg-~L~sgs~DG~I~v 464 (1133)
+++++.|++++.|+.. ....+..+...+..+.+.|++.............+++ ++ ++++|+.||+|++
T Consensus 270 ------l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~l 343 (393)
T 4gq1_A 270 ------ILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQL 343 (393)
T ss_dssp ------EEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEE
T ss_pred ------EEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEE
Confidence 9999999999865532 3344556666677777776655322222222333443 34 7788899999999
Q ss_pred EeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCC
Q 043350 465 WDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLD 507 (1133)
Q Consensus 465 Wd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~ 507 (1133)
||. .++++..+..|..+|.+ |+|||++||+++.+| +.+|.+.
T Consensus 344 wd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 344 INTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp EETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 999 67888888889999997 999999999998665 6777654
No 116
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.90 E-value=3.4e-22 Score=230.87 Aligned_cols=289 Identities=10% Similarity=0.049 Sum_probs=191.3
Q ss_pred eeeeccCCCccccccceEEEEE-eCCCCeEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEE
Q 043350 142 CLELRPHPLKETQAGRFLRNIA-CTDTQLWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLM 219 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la 219 (1133)
+..+.+|.. .|++++ ++||++|+ +.+..+++|++..... ....+...+.+++
T Consensus 12 ~~~~~~h~~-------~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~-------------------~~~~~~~~~~~~~ 65 (355)
T 3vu4_A 12 IVPENHVSN-------PVTDYEFNQDQSCLILSTLKSFEIYNVHPVAH-------------------IMSQEMRHLSKVR 65 (355)
T ss_dssp -------CC-------CCCEEEECTTSSEEEEECSSEEEEEEETTEEE-------------------EEEEECSCCCEEE
T ss_pred ccccccCCC-------ceEEEEECCCCCEEEEEcCCEEEEEecCCcce-------------------eeeeecCCeEEEE
Confidence 666788888 999999 99999999 7777899999875321 1122233578888
Q ss_pred EeCCCCEE-EEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCCCCceee-
Q 043350 220 VDCGNRLV-WTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWESIEKSL- 297 (1133)
Q Consensus 220 ~spd~~~L-aSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~~~~~~l- 297 (1133)
+.++++.+ ++|+.|++|++||+..+ +.+..+. |...|.+++|+++. ++.+ .|+.|++||+.+....+
T Consensus 66 ~~~~~~~~~~~~~~d~~v~iWd~~~~--------~~~~~~~-~~~~v~~v~~~~~~-~~~~-~~~~i~i~d~~~~~~~~~ 134 (355)
T 3vu4_A 66 MLHRTNYVAFVTGVKEVVHIWDDVKK--------QDVSRIK-VDAPVKDLFLSREF-IVVS-YGDVISVFKFGNPWKRIT 134 (355)
T ss_dssp ECTTSSEEEEECSSTTEEEEEETTTT--------EEEEEEE-CSSCEEEEEECSSE-EEEE-ETTEEEEEESSTTCCBSS
T ss_pred EcCCCCEEEEEECCccEEEEEECCCC--------cEEEEEE-CCCceEEEEEcCCE-EEEE-EcCEEEEEECCCCceeeE
Confidence 98888877 56888899999998761 3344444 67799999998754 3333 48899999998641111
Q ss_pred EeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCccee
Q 043350 298 SLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIEN 377 (1133)
Q Consensus 298 ~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~ 377 (1133)
.+.. ... ...+. + ...+++++ ..++.|++||+.+++........
T Consensus 135 ~~~~-~~~---------~~~~s-----------~--~~la~~sg--------~~~g~v~iwd~~~~~~~~~~~~~----- 178 (355)
T 3vu4_A 135 DDIR-FGG---------VCEFS-----------N--GLLVYSNE--------FNLGQIHITKLQSSGSATTQDQG----- 178 (355)
T ss_dssp CCEE-EEE---------EEEEE-----------T--TEEEEEES--------SCTTCEEEEECCC---------------
T ss_pred Eecc-CCc---------eEEEE-----------c--cEEEEeCC--------CcCcEEEEEECCCCCcccccccc-----
Confidence 1100 000 11111 1 33333335 78999999999876532111000
Q ss_pred EEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEec-CCcccCCCCCEEEEEECCCC-eEEE
Q 043350 378 RVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRG-AGAFVDDTKRTEAMVLTADG-MIWS 455 (1133)
Q Consensus 378 ~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p-~g~~~~h~~~V~sl~~spdg-~L~s 455 (1133)
+.... ..| ...+.+|...|.+++|+|+| +|++
T Consensus 179 -----~~~~~-----------------------------------------~~p~~~~~~~h~~~v~~~~~s~~g~~l~s 212 (355)
T 3vu4_A 179 -----VQQKA-----------------------------------------ILGKGVLIKAHTNPIKMVRLNRKSDMVAT 212 (355)
T ss_dssp ------------------------------------------------------CCEEECCCSSCEEEEEECTTSSEEEE
T ss_pred -----ccccc-----------------------------------------cCcccEEEEccCCceEEEEECCCCCEEEE
Confidence 00000 001 11145677888888899999 9999
Q ss_pred EecCCe-EEEEeC-CCCeeEEEe-c-CCcceeE--EecCCCEEEEEecCCeEEEEeCCCCc---ceeee-----------
Q 043350 456 GCTNGL-LVQWDG-NGNRVSDIL-H-HQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGNL---TASWI----------- 515 (1133)
Q Consensus 456 gs~DG~-I~vWd~-~g~~l~~~~-~-h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~~---l~~~~----------- 515 (1133)
|+.||+ |++||+ +++++.++. + |...|.+ |+|+|++|++|+.||+|++||+.... ...+.
T Consensus 213 ~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (355)
T 3vu4_A 213 CSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSE 292 (355)
T ss_dssp EETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCS
T ss_pred EeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccc
Confidence 999998 999999 678999998 5 9999998 99999999999999999999986321 11111
Q ss_pred ----------ccccCeEEeeec--ccceeeecccCCeeeccccCCC
Q 043350 516 ----------AHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTSPS 549 (1133)
Q Consensus 516 ----------~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s~~ 549 (1133)
.+..+...++|+ +++|++++.||.+++|++....
T Consensus 293 ~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 293 WSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp SCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred cceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 112234667888 7899999999999999987643
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.89 E-value=2.6e-22 Score=238.10 Aligned_cols=256 Identities=11% Similarity=0.148 Sum_probs=201.2
Q ss_pred eccCCCCeEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCCCC--CCCcccccccccCCCCeEEEEEeeCCc--EEEEeCC
Q 043350 208 ESANTSPTMCLMVDCG-NRLVWTGHKDGKIRSWKMDQTLDDA--NNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEG 282 (1133)
Q Consensus 208 ~~~h~s~V~~la~spd-~~~LaSgs~Dg~V~vWd~~~~~~~~--~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~D 282 (1133)
...|.++|++++|+|+ +.+|++|+.||.|++|++....... .........+.+|...|++|+|+|++. |++|+.|
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 203 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 203 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence 4468889999999997 7899999999999999997521100 011356678889999999999999987 9999999
Q ss_pred CcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCC
Q 043350 283 GVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARS 362 (1133)
Q Consensus 283 gtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~t 362 (1133)
|+|++|++...... . ..
T Consensus 204 g~i~vwd~~~~~~~-------~--------------------------------------------------------~~ 220 (430)
T 2xyi_A 204 HTICLWDINATPKE-------H--------------------------------------------------------RV 220 (430)
T ss_dssp SCEEEEETTSCCBG-------G--------------------------------------------------------GE
T ss_pred CeEEEEeCCCCCCC-------C--------------------------------------------------------ce
Confidence 99999999641000 0 00
Q ss_pred CceeEEEecCCcceeEEEeCC-CCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCC
Q 043350 363 KELLKVFNIEGHIENRVDTQS-VQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKR 441 (1133)
Q Consensus 363 g~~l~~~~~h~~~v~~l~~sp-~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~ 441 (1133)
-.....+..|...|.+++|+| ++.+ |++++.|+.|+.|+.+.... ...+.. +..|...
T Consensus 221 ~~~~~~~~~h~~~v~~v~~~p~~~~~---------l~s~~~dg~i~i~d~~~~~~----~~~~~~--------~~~~~~~ 279 (430)
T 2xyi_A 221 IDAKNIFTGHTAVVEDVAWHLLHESL---------FGSVADDQKLMIWDTRNNNT----SKPSHT--------VDAHTAE 279 (430)
T ss_dssp EECSEEECCCSSCEEEEEECSSCTTE---------EEEEETTSEEEEEETTCSCS----SSCSEE--------EECCSSC
T ss_pred eccceeecCCCCCEeeeEEeCCCCCE---------EEEEeCCCeEEEEECCCCCC----CcceeE--------eecCCCC
Confidence 011245567888899999999 5667 89999999998666542210 001111 2367778
Q ss_pred EEEEEECCCC--eEEEEecCCeEEEEeCC--CCeeEEEecCCcceeE--EecCCC-EEEEEecCCeEEEEeCCC------
Q 043350 442 TEAMVLTADG--MIWSGCTNGLLVQWDGN--GNRVSDILHHQCAVQC--FCTYGS-RMYVGYVSGYLQILDLDG------ 508 (1133)
Q Consensus 442 V~sl~~spdg--~L~sgs~DG~I~vWd~~--g~~l~~~~~h~~~V~~--fs~dg~-~Lasgs~DG~I~vwd~~g------ 508 (1133)
|.+++|+|++ .|++|+.||.|++||+. +.++..+..|...|.+ |+|+++ +|++|+.||.|+|||+..
T Consensus 280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 359 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence 8999999988 68899999999999994 4678899999999998 999995 699999999999999874
Q ss_pred ---------CcceeeeccccCeEEeeec--cc-ceeeecccCCeeeccccC
Q 043350 509 ---------NLTASWIAHSSPVLKLAVG--VD-HIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 509 ---------~~l~~~~~H~~~V~~l~fs--~~-~L~S~s~Dg~I~lW~l~s 547 (1133)
.++..+.+|...|.+++|+ +. +|++++.||.|++|++..
T Consensus 360 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp HHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred ccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 5567778999999999999 55 799999999999999854
No 118
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.89 E-value=1.6e-21 Score=228.79 Aligned_cols=154 Identities=12% Similarity=0.153 Sum_probs=124.4
Q ss_pred CCCCCCCCcccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEEeCCCCeEE--ecCCc
Q 043350 99 PDAADDQQQHKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIACTDTQLWA--GQECG 176 (1133)
Q Consensus 99 ~~~~~~~~~~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~s~dg~lla--s~Dg~ 176 (1133)
|...+.. +.|+|++++|++|+.||.|++|+..+ ++. +..+.+|.. .|.+++. ++.+++ +.|+.
T Consensus 133 ~~~~v~~---v~~s~~~~~l~~~~~dg~i~iwd~~~---~~~-~~~~~~~~~-------~v~~~~~-~~~~l~~~~~dg~ 197 (401)
T 4aez_A 133 ESTYVAS---VKWSHDGSFLSVGLGNGLVDIYDVES---QTK-LRTMAGHQA-------RVGCLSW-NRHVLSSGSRSGA 197 (401)
T ss_dssp TTCCEEE---EEECTTSSEEEEEETTSCEEEEETTT---CCE-EEEECCCSS-------CEEEEEE-ETTEEEEEETTSE
T ss_pred CCCCEEE---EEECCCCCEEEEECCCCeEEEEECcC---CeE-EEEecCCCC-------ceEEEEE-CCCEEEEEcCCCC
Confidence 4444444 88999999999999999999999873 444 888899998 8998884 344555 89999
Q ss_pred EEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCccccc
Q 043350 177 VRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGL 256 (1133)
Q Consensus 177 VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~ 256 (1133)
|++||+...... ......|.++|.+++|+|++++|++|+.||.|++||+.. .....
T Consensus 198 i~i~d~~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~--------~~~~~ 253 (401)
T 4aez_A 198 IHHHDVRIANHQ----------------IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS--------SIPKF 253 (401)
T ss_dssp EEEEETTSSSCE----------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC--------SSEEE
T ss_pred EEEEecccCcce----------------eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC--------CCccE
Confidence 999999742211 224557888999999999999999999999999999986 14556
Q ss_pred ccccCCCCeEEEEEeeCCc--EEEEe--CCCcEEEEeCC
Q 043350 257 SWQAHRGPVLAMIFSSQGD--LWSGG--EGGVIKIWPWE 291 (1133)
Q Consensus 257 ~l~gH~~~V~sl~fsp~g~--L~Sgs--~DgtI~iWdl~ 291 (1133)
.+.+|...|.+++|+|++. +++|+ .|+.|++||+.
T Consensus 254 ~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~ 292 (401)
T 4aez_A 254 TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA 292 (401)
T ss_dssp EECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT
T ss_pred EecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC
Confidence 7789999999999999887 66655 68888888874
No 119
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=99.89 E-value=2.1e-23 Score=204.87 Aligned_cols=130 Identities=17% Similarity=0.302 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHhccchhhhhhhhccCCCceEEecCeEEecc-----cceEEEEEEECCccceEEEEEeecCCCcccCC
Q 043350 926 RSERRRVFGEILKNNENTIKSMLDEYRIIPETIVSTESIILQN-----QDTCTLRITNKSAQEKAIFKIICDGQSTVKDD 1000 (1133)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-----~~~~~~~i~n~~~~~~~~f~~~~~~~~~~~~~ 1000 (1133)
+++++++|+||++++|| .||+.+|.+.++.+.|+|+. ..+++|+|+|+|++ +|.|+|+.+. +
T Consensus 2 ~~~~~~~~~ev~r~ld~------~ENe~~P~i~v~~~~ldFG~v~~~~~~~~~l~I~Ntg~v-pa~F~f~~~~------~ 68 (140)
T 3qbt_B 2 ERRYRKVFEDSVRIMDR------MENDFLPSLELSRREFVFENVKFRQLQKEKFQISNNGQV-PCHFSFIPKL------N 68 (140)
T ss_dssp ---------CCCCHHHH------HHHHTSCCEEESCCEEEEEEECBTCCEEEEEEEEECSSS-CEEEEEECCT------T
T ss_pred chHHHHHHHHHHHHHHH------HhhccCCceEeeeeeEEeeeceeeeeeeeEEEEEcCCcc-ceEEEEecCC------C
Confidence 57899999999999998 67888999988877777764 56889999999999 9999998531 1
Q ss_pred CCCCccccCCCcCCCCceEEecCceEECCCCeEEEEEEE-eeccchhhhhcCCCCCCcccccCCceeEEEEEEEccccCC
Q 043350 1001 GDASDYRLRGSFGFPRWLEVTPAAGVIKPDSYIEVSVHH-EEFHTLEEFVDGIPQNWWCEDTRDKEVMLSLVVQGCCSND 1079 (1133)
Q Consensus 1001 ~~~~~~~~~~~~~~~~wl~~~p~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 1079 (1133)
+ ...||+||+|+|..|+|+|||+++|+|++ .|-.+++.||+| ...+|+||||||+|
T Consensus 69 ~---------~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v~~~~~~~ln~g---------~~~l~diLvL~Ve~----- 125 (140)
T 3qbt_B 69 D---------SQYCKPWLRAEPFEGYLEPNETVDISLDVYVSKDSVTILNSG---------EDKIEDILVLHLDR----- 125 (140)
T ss_dssp C---------SSSSCTTEEEESCEEEECTTCEEEEEEEECBCHHHHHHHHHS---------SSCSCEEEEEEETT-----
T ss_pred c---------hhhhhHhhhcCCcccccCCCCeeEEEEEEEEccCcccccccc---------hhhhheeEEEEeec-----
Confidence 1 22589999999999999999999999994 344889999999 66999999999999
Q ss_pred CeeeEEEeeeec
Q 043350 1080 TRKHQIRVRHCF 1091 (1133)
Q Consensus 1080 ~~~~~~~~~~~~ 1091 (1133)
||||||||+|-+
T Consensus 126 G~d~fI~v~g~~ 137 (140)
T 3qbt_B 126 GKDYFLTISGNY 137 (140)
T ss_dssp SCEEEEEEEEEE
T ss_pred CCcEEEEEeccc
Confidence 999999999854
No 120
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.89 E-value=1e-21 Score=232.89 Aligned_cols=254 Identities=14% Similarity=0.136 Sum_probs=187.3
Q ss_pred CCCCCCCCCcccccCCC-CCEEEEecCCCeEEeccCCCC--C----CCCCCeeeeccCCCccccccceEEEEE-eCCCC-
Q 043350 98 GPDAADDQQQHKPFQPM-VEFIGSGGGTGIFKVPSRAAV--H----PGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQ- 168 (1133)
Q Consensus 98 ~~~~~~~~~~~~~~~p~-g~~lasgs~dg~irlW~~~~~--~----~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~- 168 (1133)
+|...+.. +.|+|+ +.+||+|+.||.|++|+.... . ....+...+.+|.. .+.+++ ++++.
T Consensus 126 ~h~~~v~~---l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~-------~v~~l~~~~~~~~ 195 (430)
T 2xyi_A 126 NHEGEVNR---ARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK-------EGYGLSWNPNLNG 195 (430)
T ss_dssp EESSCCSE---EEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS-------CCCCEEECTTSTT
T ss_pred cCCCcEEE---EEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC-------CeEEEEeCCCCCC
Confidence 55555555 788997 789999999999999998631 0 01233778889988 899999 88776
Q ss_pred eEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCC
Q 043350 169 LWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTL 245 (1133)
Q Consensus 169 lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~ 245 (1133)
+|+ +.||.|++|++......... .........|...|.+++|+| ++.+|++|+.||.|++||++...
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~~~----------~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~ 265 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEHRV----------IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN 265 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGGGE----------EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC
T ss_pred eEEEEeCCCeEEEEeCCCCCCCCce----------eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 666 78999999999863211000 000224457888999999999 78899999999999999998621
Q ss_pred CCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCcee
Q 043350 246 DDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVT 323 (1133)
Q Consensus 246 ~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~ 323 (1133)
..+.+..+.+|...|++|+|+|++. |++|+.||+|++||++..
T Consensus 266 -----~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~------------------------------ 310 (430)
T 2xyi_A 266 -----TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL------------------------------ 310 (430)
T ss_dssp -----SSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT------------------------------
T ss_pred -----CCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC------------------------------
Confidence 1245566789999999999999987 889999999999998521
Q ss_pred eeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCC
Q 043350 324 VNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKK 403 (1133)
Q Consensus 324 v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~D 403 (1133)
+.++..+..|...|++++|+|++..
T Consensus 311 ---------------------------------------~~~~~~~~~h~~~v~~i~~sp~~~~---------------- 335 (430)
T 2xyi_A 311 ---------------------------------------KLKLHSFESHKDEIFQVQWSPHNET---------------- 335 (430)
T ss_dssp ---------------------------------------TSCSEEEECCSSCEEEEEECSSCTT----------------
T ss_pred ---------------------------------------CCCeEEeecCCCCEEEEEECCCCCC----------------
Confidence 1223334445555555555555432
Q ss_pred CccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeCCC--------------
Q 043350 404 EKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGNG-------------- 469 (1133)
Q Consensus 404 g~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~g-------------- 469 (1133)
.|++++.||.|++||+..
T Consensus 336 ------------------------------------------------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 367 (430)
T 2xyi_A 336 ------------------------------------------------ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 367 (430)
T ss_dssp ------------------------------------------------EEEEEETTSCCEEEEGGGTTCCCCHHHHHHCC
T ss_pred ------------------------------------------------EEEEEeCCCcEEEEeCCCCccccCccccccCC
Confidence 366777777777787733
Q ss_pred -CeeEEEecCCcceeE--EecCCC-EEEEEecCCeEEEEeCCCC
Q 043350 470 -NRVSDILHHQCAVQC--FCTYGS-RMYVGYVSGYLQILDLDGN 509 (1133)
Q Consensus 470 -~~l~~~~~h~~~V~~--fs~dg~-~Lasgs~DG~I~vwd~~g~ 509 (1133)
.++..+.+|...|.+ |+|++. +|++++.||.|+||++...
T Consensus 368 ~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 368 PELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 566777778888888 888888 8899999999999998643
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.89 E-value=5.8e-23 Score=240.84 Aligned_cols=251 Identities=10% Similarity=0.004 Sum_probs=166.9
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEee--------CCc-EEEEeCC
Q 043350 212 TSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSS--------QGD-LWSGGEG 282 (1133)
Q Consensus 212 ~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp--------~g~-L~Sgs~D 282 (1133)
...+....+.+++.+|++|+.|++|+|||...+.. .....+..+.+|.+.|++|+|+| +|+ |+|||.|
T Consensus 89 ~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~---~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 89 DGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETI---ITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp --------CCEEEEEEEEEETTSCEEEEEEETTEE---EEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred CCCcceeecCCCCCEEEEEeCCCcEEEEECCCCcc---ceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 33444555566888999999999999999876221 01123456899999999999998 677 9999999
Q ss_pred CcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCC
Q 043350 283 GVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARS 362 (1133)
Q Consensus 283 gtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~t 362 (1133)
++|+|||+. +
T Consensus 166 ~tv~~Wd~~----------------------------------------------------------------------~ 175 (393)
T 4gq1_A 166 CTLIIWRLT----------------------------------------------------------------------D 175 (393)
T ss_dssp SEEEEEEEE----------------------------------------------------------------------T
T ss_pred CeEEEEECC----------------------------------------------------------------------C
Confidence 999999873 2
Q ss_pred CceeEEEecCCcceeEEEeCCCCC-ccccccceEEEEeeCCCCccccccccccce---ee----ccCCceEEEEEecCCc
Q 043350 363 KELLKVFNIEGHIENRVDTQSVQD-QPVEDEMKVKFVSSNKKEKPHGFLQRSRNA---IM----GAADAVRRVATRGAGA 434 (1133)
Q Consensus 363 g~~l~~~~~h~~~v~~l~~sp~g~-~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~---~~----~~~~~V~~v~~~p~g~ 434 (1133)
+..+..+..|...+.+++|+|++. + |++|+.|++|+.|+.+.... .. .+...+......+...
T Consensus 176 ~~~~~~~~~~~~~v~~v~~~p~~~~~---------l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 246 (393)
T 4gq1_A 176 EGPILAGYPLSSPGISVQFRPSNPNQ---------LIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN 246 (393)
T ss_dssp TEEEEEEEECSSCEEEEEEETTEEEE---------EEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred CceeeeecCCCCCcEEEEECCCCCce---------EEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence 233344556777889999999874 6 99999999999665442211 11 1112222222222111
Q ss_pred ---ccCCCCCEEEEEEC-CCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCccee-------------------E-Eec-
Q 043350 435 ---FVDDTKRTEAMVLT-ADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQ-------------------C-FCT- 487 (1133)
Q Consensus 435 ---~~~h~~~V~sl~~s-pdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~-------------------~-fs~- 487 (1133)
..+|...+.++.++ +++ .|++++.|+++++||+ .++....+..|...+. + +++
T Consensus 247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR 326 (393)
T ss_dssp -----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence 45778889999886 788 9999999999999998 4444444444333222 2 333
Q ss_pred -CCCEEEEEecCCeEEEEeCC-CCcceeeeccccCeEEeeec--ccceeeecccCCeeeccc
Q 043350 488 -YGSRMYVGYVSGYLQILDLD-GNLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTF 545 (1133)
Q Consensus 488 -dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l 545 (1133)
++.++++|+.||+|++||+. ++.+..+.+|..+|.+|+|+ +++|++++.|| +.+|.+
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 34577888999999999997 56777888999999999999 88999888665 555554
No 122
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=4.6e-22 Score=253.20 Aligned_cols=251 Identities=8% Similarity=0.072 Sum_probs=191.6
Q ss_pred eeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEE
Q 043350 142 CLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCL 218 (1133)
Q Consensus 142 ~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~l 218 (1133)
...+.+|.. .|++++ ++++++++ +.||+|++||+.+..... ......|.++|.|+
T Consensus 2 ~~~l~gH~~-------~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~---------------~~~l~~h~~~V~~l 59 (753)
T 3jro_A 2 VVIANAHNE-------LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKL---------------IDTLTGHEGPVWRV 59 (753)
T ss_dssp ------CCC-------CEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEE---------------EEEECCCSSCEEEE
T ss_pred eeecccCcc-------eeEEEEECCCCCeEEEEECCCcEEEEecCCCCCcc---------------ceeccCCcCceEEE
Confidence 346789998 999999 99998888 789999999987421110 22455788999999
Q ss_pred EEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeC--Cc-EEEEeCCCcEEEEeCCCC
Q 043350 219 MVDCG--NRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQ--GD-LWSGGEGGVIKIWPWESI 293 (1133)
Q Consensus 219 a~spd--~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~--g~-L~Sgs~DgtI~iWdl~~~ 293 (1133)
+|+|+ +++|++|+.||+|++||+..+.. .....+.+|...|++++|+|+ +. |++|+.||+|++||+...
T Consensus 60 ~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~ 133 (753)
T 3jro_A 60 DWAHPKFGTILASCSYDGKVLIWKEENGRW------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN 133 (753)
T ss_dssp EECCTTSCSEEEEEETTSCEEEEEEETTEE------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSS
T ss_pred EecCCCCCCEEEEEeCCCeEEEEECCCCcc------cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC
Confidence 99987 99999999999999999986211 356678899999999999999 88 999999999999998642
Q ss_pred ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCC
Q 043350 294 EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEG 373 (1133)
Q Consensus 294 ~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~ 373 (1133)
. ......+..|.
T Consensus 134 ~--------------------------------------------------------------------~~~~~~~~~~~ 145 (753)
T 3jro_A 134 G--------------------------------------------------------------------TTSPIIIDAHA 145 (753)
T ss_dssp S--------------------------------------------------------------------CCCCEEEECCS
T ss_pred C--------------------------------------------------------------------CcceeEeecCC
Confidence 0 01112334566
Q ss_pred cceeEEEeCC-------------CCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCC
Q 043350 374 HIENRVDTQS-------------VQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTK 440 (1133)
Q Consensus 374 ~~v~~l~~sp-------------~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~ 440 (1133)
..|.++.|+| ++.. +++|+.||+|+.|+.+... ....... .+.+|..
T Consensus 146 ~~v~~l~~~p~~~~~~~~~~~~~d~~~---------l~sgs~dg~I~iwd~~~~~-------~~~~~~~----~~~~h~~ 205 (753)
T 3jro_A 146 IGVNSASWAPATIEEDGEHNGTKESRK---------FVTGGADNLVKIWKYNSDA-------QTYVLES----TLEGHSD 205 (753)
T ss_dssp SCEEEEEECCCC---------CGGGCC---------EEEEETTSCEEEEEEETTT-------TEEEEEE----EECCCSS
T ss_pred CceEEEEecCcccccccccccCCCCCE---------EEEEECCCeEEEEeccCCc-------ccceeee----eecCCCC
Confidence 7788888888 5778 9999999999866543211 1111111 2457888
Q ss_pred CEEEEEECCC---C-eEEEEecCCeEEEEeCCC-C-----eeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCC
Q 043350 441 RTEAMVLTAD---G-MIWSGCTNGLLVQWDGNG-N-----RVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 441 ~V~sl~~spd---g-~L~sgs~DG~I~vWd~~g-~-----~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g 508 (1133)
.|.+++|+|+ + .|++|+.||.|++||... . .+.....|...|++ |+|+|++|++|+.||.|++||+..
T Consensus 206 ~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 206 WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp CEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred cEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 9999999999 8 999999999999999943 2 33334457888886 999999999999999999999873
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.88 E-value=3.4e-21 Score=215.86 Aligned_cols=283 Identities=12% Similarity=0.015 Sum_probs=193.4
Q ss_pred CeEEEEEeCCCC---EEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEe
Q 043350 214 PTMCLMVDCGNR---LVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWP 289 (1133)
Q Consensus 214 ~V~~la~spd~~---~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWd 289 (1133)
.+.++-|-..+- .+++++. .+|++|+... ...++.++++..|..+|..|+|.|+-. |+..... +
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------~ 108 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALD-----AWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------N 108 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES-SEEEEEEESS-----SSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC------S
T ss_pred EEeeeeeccCCCCccEEEEecc-ceEEEcccCC-----CccceeeEEEeccCceeEEEEEcCcccceeeeeec------c
Confidence 356666655433 5777776 6899999987 334678899999999999999999866 5544321 1
Q ss_pred CCC-CceeeEeCCC----CceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecC-CC
Q 043350 290 WES-IEKSLSLKPE----EKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDAR-SK 363 (1133)
Q Consensus 290 l~~-~~~~l~~~~~----~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~-tg 363 (1133)
++. .+..+.+.|+ +..+++++.+..+|.+. ...++.+. ..+.|+.|++|++. +|
T Consensus 109 ~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~--------------~g~lv~ss------~~g~d~~V~~~~~s~dG 168 (356)
T 2w18_A 109 LEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLT--------------KRRLVSSS------GTLSDQQVEVMTFAEDG 168 (356)
T ss_dssp SSEEEEEEECC------CCEEEEEEEEEEEEEEET--------------TTEEEEEE------SSSTTCEEEEEEECTTS
T ss_pred ccccceEEEEECCCccccccEEEeCCCeEEEEecC--------------CCcEEEec------ccCCCCcEEEEEECCCC
Confidence 222 3456777888 77777766554455442 22232221 01469999999994 69
Q ss_pred ceeEEEecCCcceeEEEeCC---CCCccccccceEEEEeeCCCCcccccccc---ccceeeccC---CceEEEEEecCCc
Q 043350 364 ELLKVFNIEGHIENRVDTQS---VQDQPVEDEMKVKFVSSNKKEKPHGFLQR---SRNAIMGAA---DAVRRVATRGAGA 434 (1133)
Q Consensus 364 ~~l~~~~~h~~~v~~l~~sp---~g~~~~e~e~~v~lasgs~Dg~i~~~~~~---~~~~~~~~~---~~V~~v~~~p~g~ 434 (1133)
+.+..+.+|...++.++|++ ++.. |++|+.|++|+.|+.+ .+..+.++. ..+..++|+|+|.
T Consensus 169 ~~~~s~~~~~~~v~~l~fs~~~g~~~~---------LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~ 239 (356)
T 2w18_A 169 GGKENQFLMPPEETILTFAEVQGMQEA---------LLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGL 239 (356)
T ss_dssp CEEEEEEECCCSSCEEEEEEEETSTTE---------EEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTE
T ss_pred ceeeeeccCCCceeeEEeeccCCCCce---------EEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCC
Confidence 99999999999999999999 6788 9999999999966644 445554432 2344455665443
Q ss_pred ccCCCCCEEEEEECC-CC--eEEEEecCCeEEEEeC-CCCeeEEE-----ecCCcceeEEecCCCEEEEEecCCeEEEEe
Q 043350 435 FVDDTKRTEAMVLTA-DG--MIWSGCTNGLLVQWDG-NGNRVSDI-----LHHQCAVQCFCTYGSRMYVGYVSGYLQILD 505 (1133)
Q Consensus 435 ~~~h~~~V~sl~~sp-dg--~L~sgs~DG~I~vWd~-~g~~l~~~-----~~h~~~V~~fs~dg~~Lasgs~DG~I~vwd 505 (1133)
+ .+.++. ++ .+++|+.|++|++||. +++++..+ .+|...+.+.+.++.++|+|+.||+|+|||
T Consensus 240 ~--------lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWD 311 (356)
T 2w18_A 240 L--------FIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWD 311 (356)
T ss_dssp E--------EEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred E--------EEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEE
Confidence 2 112221 11 3688999999999999 55666554 356666666555688999999999999999
Q ss_pred CC-CCcceeeeccccCeE-Eeeec--ccceeeecccCCeeeccc
Q 043350 506 LD-GNLTASWIAHSSPVL-KLAVG--VDHIYSLAAHGGIRGWTF 545 (1133)
Q Consensus 506 ~~-g~~l~~~~~H~~~V~-~l~fs--~~~L~S~s~Dg~I~lW~l 545 (1133)
+. ++++.++.+|...|. .++|+ +++|+|++.|++|++|++
T Consensus 312 l~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 312 LLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 97 678899999988766 58999 889999999999999985
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.88 E-value=1.9e-20 Score=217.90 Aligned_cols=269 Identities=9% Similarity=0.045 Sum_probs=192.9
Q ss_pred CEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeE-E--ecCCcEEEeeCCCCCCcCcC
Q 043350 116 EFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLW-A--GQECGVRFWNLEDSYEPGAG 191 (1133)
Q Consensus 116 ~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~ll-a--s~Dg~VrvWdl~~~~~~~~g 191 (1133)
.++++++.|+.|++|+..+ ++. +..+..|. .+.+++ ++++.++ + +.|+.|++||+.+....
T Consensus 3 ~l~vs~~~d~~v~v~d~~~---~~~-~~~~~~~~--------~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~--- 67 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTS---NKV-TATIPVGS--------NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI--- 67 (391)
T ss_dssp EEEEEETTTTEEEEEETTT---TEE-EEEEECSS--------SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE---
T ss_pred EEEEEcCCCCEEEEEECCC---CeE-EEEeecCC--------CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEE---
Confidence 4688999999999999873 444 66666664 478888 9999866 4 47999999998763211
Q ss_pred CCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEE-EEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEE
Q 043350 192 IGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVW-TGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIF 270 (1133)
Q Consensus 192 h~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~La-Sgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~f 270 (1133)
.....+ ..+.+++|+|+++.|+ +++.|+.|++||+..+ +.+..+. +...+.+++|
T Consensus 68 --------------~~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~--------~~~~~~~-~~~~~~~~~~ 123 (391)
T 1l0q_A 68 --------------ATVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN--------TVAGTVK-TGKSPLGLAL 123 (391)
T ss_dssp --------------EEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--------EEEEEEE-CSSSEEEEEE
T ss_pred --------------EEEECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCC--------eEEEEEe-CCCCcceEEE
Confidence 112222 3899999999999875 5556799999999861 2233333 4457899999
Q ss_pred eeCCc-E-EEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEE
Q 043350 271 SSQGD-L-WSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVW 348 (1133)
Q Consensus 271 sp~g~-L-~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vw 348 (1133)
+|+|+ | ++++.|+.|++||+.+
T Consensus 124 s~dg~~l~~~~~~~~~v~~~d~~~-------------------------------------------------------- 147 (391)
T 1l0q_A 124 SPDGKKLYVTNNGDKTVSVINTVT-------------------------------------------------------- 147 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTT--------------------------------------------------------
T ss_pred CCCCCEEEEEeCCCCEEEEEECCC--------------------------------------------------------
Confidence 99998 6 7888899999998743
Q ss_pred ecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEE-EeeCCCCccccccccccceeeccCCceEEE
Q 043350 349 CAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKF-VSSNKKEKPHGFLQRSRNAIMGAADAVRRV 427 (1133)
Q Consensus 349 ss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~l-asgs~Dg~i~~~~~~~~~~~~~~~~~V~~v 427 (1133)
++.+..+..+ ..+..++|+|+++. + ++++.++.++.|+.+.... +..
T Consensus 148 --------------~~~~~~~~~~-~~~~~~~~~~dg~~---------l~~~~~~~~~v~~~d~~~~~~-------~~~- 195 (391)
T 1l0q_A 148 --------------KAVINTVSVG-RSPKGIAVTPDGTK---------VYVANFDSMSISVIDTVTNSV-------IDT- 195 (391)
T ss_dssp --------------TEEEEEEECC-SSEEEEEECTTSSE---------EEEEETTTTEEEEEETTTTEE-------EEE-
T ss_pred --------------CcEEEEEecC-CCcceEEECCCCCE---------EEEEeCCCCEEEEEECCCCeE-------EEE-
Confidence 2222233332 23578899999987 6 6788888887555432211 111
Q ss_pred EEecCCcccCCCCCEEEEEECCCC-eEEEEe---cCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEE-EEEecCC
Q 043350 428 ATRGAGAFVDDTKRTEAMVLTADG-MIWSGC---TNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRM-YVGYVSG 499 (1133)
Q Consensus 428 ~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs---~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~L-asgs~DG 499 (1133)
..+...+.+++++|++ .|++++ .++.|++||+ .++.+..+..|.. +.+ |+|+|++| ++++.|+
T Consensus 196 --------~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~ 266 (391)
T 1l0q_A 196 --------VKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFXN 266 (391)
T ss_dssp --------EECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTTT
T ss_pred --------EecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC-ccEEEEccCCCEEEEEcCCCC
Confidence 1233467888999999 788877 6899999999 5677778877665 444 99999988 5668899
Q ss_pred eEEEEeCC-CCcceeeeccccC
Q 043350 500 YLQILDLD-GNLTASWIAHSSP 520 (1133)
Q Consensus 500 ~I~vwd~~-g~~l~~~~~H~~~ 520 (1133)
.|++||+. ++++..+..|..+
T Consensus 267 ~v~v~d~~~~~~~~~~~~~~~~ 288 (391)
T 1l0q_A 267 TVSVIDTATNTITATMAVGKNP 288 (391)
T ss_dssp EEEEEETTTTEEEEEEECSSSE
T ss_pred EEEEEECCCCcEEEEEECCcCC
Confidence 99999997 5666666666543
No 125
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.2e-21 Score=222.62 Aligned_cols=273 Identities=8% Similarity=-0.026 Sum_probs=186.6
Q ss_pred cCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE-ecCCcEEEeeCCCCCCc
Q 043350 111 FQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA-GQECGVRFWNLEDSYEP 188 (1133)
Q Consensus 111 ~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla-s~Dg~VrvWdl~~~~~~ 188 (1133)
+.+++.+|++|+.||+|++|+..+ ++. +..+. .. .|.++. +++ +++ +.|++|++|+.......
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~---~~~-~~~~~--~~-------~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~ 108 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKD---SKT-ITTIT--TP-------NPRTGGEHPA--IISRGPCNRLLLLYPGNQITI 108 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESS---SSC-EEEEE--EE-------CCCTTCCCCS--EEEECSTTEEEEEETTTEEEE
T ss_pred hcCCCCEEEEECCCCcEEEEECCC---CcE-EEEEe--cC-------CceeeeeCCc--eEEecCCCeEEEEEccCceEE
Confidence 457889999999999999999874 444 55554 12 455555 555 555 88999999988763211
Q ss_pred CcCCCccccCCCCCCCceeeccCCCCeEEEEEeC--CCCEEEEEeCCCeEEEEeCCCCCCCCCCCccccccc-ccCCCCe
Q 043350 189 GAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC--GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSW-QAHRGPV 265 (1133)
Q Consensus 189 ~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp--d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l-~gH~~~V 265 (1133)
+....+ .........|..+|.+++|+| ++++|++|+.||+|++||+..+ +..... ..|...|
T Consensus 109 ~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~--------~~~~~~~~~~~~~i 173 (343)
T 3lrv_A 109 LDSKTN-------KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD--------SQYIVHSAKSDVEY 173 (343)
T ss_dssp EETTTC-------CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSS--------CEEEEECCCSSCCC
T ss_pred eecCCc-------ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCC--------cEEEEEecCCCCce
Confidence 100000 000112235667899999999 9999999999999999999861 222333 3456689
Q ss_pred EEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCc
Q 043350 266 LAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHAR 344 (1133)
Q Consensus 266 ~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~ 344 (1133)
++++|+|+|. |++|+.||+|++||+++
T Consensus 174 ~~~~~~pdg~~lasg~~dg~i~iwd~~~---------------------------------------------------- 201 (343)
T 3lrv_A 174 SSGVLHKDSLLLALYSPDGILDVYNLSS---------------------------------------------------- 201 (343)
T ss_dssp CEEEECTTSCEEEEECTTSCEEEEESSC----------------------------------------------------
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEECCC----------------------------------------------------
Confidence 9999999999 99999999999999853
Q ss_pred eEEEecCCCceeEeecCCCcee-EEEec-CCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCC
Q 043350 345 ARVWCAQPLSFSLWDARSKELL-KVFNI-EGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAAD 422 (1133)
Q Consensus 345 i~vwss~d~~I~lWD~~tg~~l-~~~~~-h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~ 422 (1133)
++.+ ..+.. |...|++++|+|++.+ |++++ +++|+.|+.+.........
T Consensus 202 ------------------~~~~~~~~~~~h~~~v~~l~fs~~g~~---------l~s~~-~~~v~iwd~~~~~~~~~~~- 252 (343)
T 3lrv_A 202 ------------------PDQASSRFPVDEEAKIKEVKFADNGYW---------MVVEC-DQTVVCFDLRKDVGTLAYP- 252 (343)
T ss_dssp ------------------TTSCCEECCCCTTSCEEEEEECTTSSE---------EEEEE-SSBEEEEETTSSTTCBSSC-
T ss_pred ------------------CCCCccEEeccCCCCEEEEEEeCCCCE---------EEEEe-CCeEEEEEcCCCCcceeec-
Confidence 2222 34455 7889999999999999 99999 5588877654332211000
Q ss_pred ceEEEEEecCCcccCCCCCE--EEEEECCCC-eEEEEec-CCeEEEEeCC-CCeeEEEecCCcceeE--Eec---CCCEE
Q 043350 423 AVRRVATRGAGAFVDDTKRT--EAMVLTADG-MIWSGCT-NGLLVQWDGN-GNRVSDILHHQCAVQC--FCT---YGSRM 492 (1133)
Q Consensus 423 ~V~~v~~~p~g~~~~h~~~V--~sl~~spdg-~L~sgs~-DG~I~vWd~~-g~~l~~~~~h~~~V~~--fs~---dg~~L 492 (1133)
.+..+...+ .+++|+|+| +|++++. |+.|++|+.. +...... .++.+ |.+ ++..|
T Consensus 253 -----------~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l 317 (343)
T 3lrv_A 253 -----------TYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDM 317 (343)
T ss_dssp -----------CCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEE
T ss_pred -----------ccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCcccccccee
Confidence 001111122 468999999 9999888 9999999983 3322222 33444 777 88899
Q ss_pred EEEecCCeEEEEeCCCC
Q 043350 493 YVGYVSGYLQILDLDGN 509 (1133)
Q Consensus 493 asgs~DG~I~vwd~~g~ 509 (1133)
++++.||.+.++-..+.
T Consensus 318 ~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 318 DVVCGDGGIAAILKTND 334 (343)
T ss_dssp EEEEETTEEEEEEECSS
T ss_pred EEEecCCceEEEEecCC
Confidence 99999999998865543
No 126
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=99.87 E-value=3.1e-22 Score=229.41 Aligned_cols=155 Identities=17% Similarity=0.272 Sum_probs=103.4
Q ss_pred eecCHHHHHHHHHHHHHhccchhhhhhhhccCCCceEEecCeEEec-----ccceEEEEEEECCccceEEEEEeecCCCc
Q 043350 922 AHVDRSERRRVFGEILKNNENTIKSMLDEYRIIPETIVSTESIILQ-----NQDTCTLRITNKSAQEKAIFKIICDGQST 996 (1133)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-----~~~~~~~~i~n~~~~~~~~f~~~~~~~~~ 996 (1133)
++||+++|+++++||++++|| .||+.+|.++|+.+.|+|+ ...+++|+|+|||++ +|+|+|+.+
T Consensus 1 ~~i~~~~~~~~~~ev~~~~d~------~en~~~P~v~v~~~~idFg~v~~~~~~~~~l~i~N~g~~-pa~f~f~~~---- 69 (366)
T 3qis_A 1 KVVDERRYRKVFEDSVRIMDR------MENDFLPSLELSRREFVFENVKFRQLQKEKFQISNNGQV-PCHFSFIPK---- 69 (366)
T ss_dssp ---------------------------------CCEEESCSEEEEEEECBTCCEEEEEEEEECSSS-CEEEEEECC----
T ss_pred CccCHHHHHHHHHHHHHHHhH------HHhccCCeEEEecCeEEeeeeeeCCeEEEEEEEEecCCc-eEEEEEEeC----
Confidence 478999999999999999999 6788899998877777765 467899999999999 999999853
Q ss_pred ccCCCCCCccccCCCcCCCCceEEecCceEECCCCeEEEEEEE-eeccchhhhhcCCCCCCcccccCCceeEEEEEEEcc
Q 043350 997 VKDDGDASDYRLRGSFGFPRWLEVTPAAGVIKPDSYIEVSVHH-EEFHTLEEFVDGIPQNWWCEDTRDKEVMLSLVVQGC 1075 (1133)
Q Consensus 997 ~~~~~~~~~~~~~~~~~~~~wl~~~p~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1075 (1133)
.+ +...||+||+|+|..|+|+|||+++|+|++ .+-.+++.||+| ...+|+||||||+|
T Consensus 70 --~~---------~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v~~~~~~~ln~g---------~~~l~diLvL~ve~- 128 (366)
T 3qis_A 70 --LN---------DSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSKDSVTILNSG---------EDKIEDILVLHLDR- 128 (366)
T ss_dssp --TT---------CSSSSCTTEEEESCEEEECTTCEEEEEEEECBCTTTHHHHHHT---------SSCSCEEEEEEETT-
T ss_pred --CC---------CCCCCCCcEEEeCCccEECCCCEEEEEEEEEECHHHHHHHhcC---------ccccceEEEEEEeC-
Confidence 11 123589999999999999999999999993 455899999999 56999999999999
Q ss_pred ccCCCeeeEEEeee-----ecCCCcc-ccccCCCCcccccCCCc
Q 043350 1076 CSNDTRKHQIRVRH-----CFSAKTV-RIDSKSNGSRKHQGGST 1113 (1133)
Q Consensus 1076 ~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~ 1113 (1133)
||||||+|++ |||.+.+ ++..+. .+|....+.+
T Consensus 129 ----G~d~FI~v~~~~~~s~FG~sl~~l~~~~~-pir~~~~~~l 167 (366)
T 3qis_A 129 ----GKDYFLTISGNYLPSCFGTSLEALCRMKR-PIREVPVTKL 167 (366)
T ss_dssp ----SCEEEEEEEEEECCCSTTSCHHHHHHCCS-CTTC------
T ss_pred ----CCcEEEEeccccCCccccCcHHHHHHhcc-chhhcChhhh
Confidence 9999999997 9999998 666653 5665544433
No 127
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.87 E-value=1.5e-20 Score=222.11 Aligned_cols=270 Identities=9% Similarity=0.033 Sum_probs=194.1
Q ss_pred EEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCe
Q 043350 159 LRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGK 235 (1133)
Q Consensus 159 V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~ 235 (1133)
+.+++ ++++.+++ +.|+.|++||+.+...... .. ......|...|.+++|++++.++++++.|+.
T Consensus 125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~-----------~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRL-SP-----------PEKYKKKLGFVETISIPEHNELWVSQMQANA 192 (433)
T ss_dssp BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEE-CC-----------CHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeee-cC-----------cccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence 44677 77777777 5678999999886321100 00 1123468889999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-E-EEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecc
Q 043350 236 IRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-L-WSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVER 313 (1133)
Q Consensus 236 V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L-~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~ 313 (1133)
|++||+..+ +....+..|...+.+++|+|+++ + ++++.|+.|++||+.+.
T Consensus 193 v~~~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~-------------------- 244 (433)
T 3bws_A 193 VHVFDLKTL--------AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK-------------------- 244 (433)
T ss_dssp EEEEETTTC--------CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT--------------------
T ss_pred EEEEECCCc--------eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC--------------------
Confidence 999999761 34556778999999999999998 5 56668899999987531
Q ss_pred eEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccc
Q 043350 314 SFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEM 393 (1133)
Q Consensus 314 s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~ 393 (1133)
+.+..+.. ...+.+++++|++..
T Consensus 245 --------------------------------------------------~~~~~~~~-~~~~~~~~~~~~g~~------ 267 (433)
T 3bws_A 245 --------------------------------------------------LEIRKTDK-IGLPRGLLLSKDGKE------ 267 (433)
T ss_dssp --------------------------------------------------EEEEECCC-CSEEEEEEECTTSSE------
T ss_pred --------------------------------------------------cEEEEecC-CCCceEEEEcCCCCE------
Confidence 12222222 223678899999988
Q ss_pred eEEEEeeC--------CCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC--eEEEEecCCeEE
Q 043350 394 KVKFVSSN--------KKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG--MIWSGCTNGLLV 463 (1133)
Q Consensus 394 ~v~lasgs--------~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg--~L~sgs~DG~I~ 463 (1133)
+++++ .|+.|+.|+.+.... +..+ .+...+.+++++|++ .+++++.|+.|+
T Consensus 268 ---l~~~~~~~~~~~~~dg~i~~~d~~~~~~-------~~~~---------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~ 328 (433)
T 3bws_A 268 ---LYIAQFSASNQESGGGRLGIYSMDKEKL-------IDTI---------GPPGNKRHIVSGNTENKIYVSDMCCSKIE 328 (433)
T ss_dssp ---EEEEEEESCTTCSCCEEEEEEETTTTEE-------EEEE---------EEEECEEEEEECSSTTEEEEEETTTTEEE
T ss_pred ---EEEEECCCCccccCCCeEEEEECCCCcE-------Eeec---------cCCCCcceEEECCCCCEEEEEecCCCEEE
Confidence 77776 466666444332111 1111 122356788899998 456678999999
Q ss_pred EEeCC-CCeeEEEecCCcceeE--EecCCCEEEEEec---------------CCeEEEEeCC-CCcceeeeccccCeEEe
Q 043350 464 QWDGN-GNRVSDILHHQCAVQC--FCTYGSRMYVGYV---------------SGYLQILDLD-GNLTASWIAHSSPVLKL 524 (1133)
Q Consensus 464 vWd~~-g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~---------------DG~I~vwd~~-g~~l~~~~~H~~~V~~l 524 (1133)
+||.. ++.+..+. +...+.+ |+|+|++|++++. ||.|++||+. ++.+..+.. ...+.++
T Consensus 329 v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~ 406 (433)
T 3bws_A 329 VYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGL 406 (433)
T ss_dssp EEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEE
T ss_pred EEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceE
Confidence 99995 56666665 5566666 9999999998886 5799999996 455666655 4578999
Q ss_pred eec--ccceeeec-ccCCeeecccc
Q 043350 525 AVG--VDHIYSLA-AHGGIRGWTFT 546 (1133)
Q Consensus 525 ~fs--~~~L~S~s-~Dg~I~lW~l~ 546 (1133)
+|+ +++|++++ .|+.|++|++.
T Consensus 407 ~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 407 DVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEcCCCCEEEEEECCCCeEEEEEec
Confidence 998 77888776 49999999975
No 128
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.9e-21 Score=221.53 Aligned_cols=230 Identities=10% Similarity=0.059 Sum_probs=176.1
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCCCCceeeEeCC
Q 043350 222 CGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWESIEKSLSLKP 301 (1133)
Q Consensus 222 pd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~~~~~~l~~~~ 301 (1133)
+++.+|++|+.||+|++||+..+ +.+..+. ...|.++.|+|. ++||+.|++|++|+..
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~--------~~~~~~~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~---------- 103 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDS--------KTITTIT--TPNPRTGGEHPA--IISRGPCNRLLLLYPG---------- 103 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSS--------SCEEEEE--EECCCTTCCCCS--EEEECSTTEEEEEETT----------
T ss_pred CCCCEEEEECCCCcEEEEECCCC--------cEEEEEe--cCCceeeeeCCc--eEEecCCCeEEEEEcc----------
Confidence 47889999999999999999862 2222333 567888888887 9999999999999874
Q ss_pred CCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEe-cCCcceeEEE
Q 043350 302 EEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFN-IEGHIENRVD 380 (1133)
Q Consensus 302 ~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~-~h~~~v~~l~ 380 (1133)
+.+.+||..+++.++.+. .|...|.+++
T Consensus 104 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 132 (343)
T 3lrv_A 104 ---------------------------------------------------NQITILDSKTNKVLREIEVDSANEIIYMY 132 (343)
T ss_dssp ---------------------------------------------------TEEEEEETTTCCEEEEEECCCSSCEEEEE
T ss_pred ---------------------------------------------------CceEEeecCCcceeEEeecCCCCCEEEEE
Confidence 235567778888777665 6667899999
Q ss_pred eCC--CCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEe
Q 043350 381 TQS--VQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGC 457 (1133)
Q Consensus 381 ~sp--~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs 457 (1133)
++| ++.+ +++++.|++++.|+.+.... +... ...+...+.+++|+|++ +|++|+
T Consensus 133 ~~~~~~~~~---------l~s~s~dg~i~~wd~~~~~~----------~~~~----~~~~~~~i~~~~~~pdg~~lasg~ 189 (343)
T 3lrv_A 133 GHNEVNTEY---------FIWADNRGTIGFQSYEDDSQ----------YIVH----SAKSDVEYSSGVLHKDSLLLALYS 189 (343)
T ss_dssp CCC---CCE---------EEEEETTCCEEEEESSSSCE----------EEEE----CCCSSCCCCEEEECTTSCEEEEEC
T ss_pred cCCCCCCCE---------EEEEeCCCcEEEEECCCCcE----------EEEE----ecCCCCceEEEEECCCCCEEEEEc
Confidence 999 9999 99999999998666442221 1111 12344568899999999 999999
Q ss_pred cCCeEEEEeC-CCCee-EEEec-CCcceeE--EecCCCEEEEEecCCeEEEEeCCC-Ccceeee---ccccCeE--Eeee
Q 043350 458 TNGLLVQWDG-NGNRV-SDILH-HQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG-NLTASWI---AHSSPVL--KLAV 526 (1133)
Q Consensus 458 ~DG~I~vWd~-~g~~l-~~~~~-h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g-~~l~~~~---~H~~~V~--~l~f 526 (1133)
.||.|++||+ +++.+ ..+.. |...|++ |+|+|.+|++|+ |++|++||+.. +.+..+. .|...+. +++|
T Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (343)
T 3lrv_A 190 PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDI 268 (343)
T ss_dssp TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEE
T ss_pred CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEE
Confidence 9999999999 56666 78888 9999999 999999999999 55999999974 3433333 3555554 5889
Q ss_pred c--ccceeeecc-cCCeeeccccCC
Q 043350 527 G--VDHIYSLAA-HGGIRGWTFTSP 548 (1133)
Q Consensus 527 s--~~~L~S~s~-Dg~I~lW~l~s~ 548 (1133)
+ +++|++++. |+.|++|++...
T Consensus 269 ~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 269 DDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTT
T ss_pred CCCCCEEEEecCCCCcEEEEEEccc
Confidence 8 889999888 999999998653
No 129
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.4e-20 Score=224.33 Aligned_cols=163 Identities=12% Similarity=-0.002 Sum_probs=126.6
Q ss_pred CCceeEEEe--cCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCC
Q 043350 362 SKELLKVFN--IEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDT 439 (1133)
Q Consensus 362 tg~~l~~~~--~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~ 439 (1133)
+++.+..+. .+...+++++|+|++.+ |++|+.++.++.|+......... +...+.+|.
T Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~---------l~~~~~~g~v~~~~~~~~~~~~~-----------~~~~~~~h~ 195 (450)
T 2vdu_B 136 SKNVLKLRKRFCFSKRPNAISIAEDDTT---------VIIADKFGDVYSIDINSIPEEKF-----------TQEPILGHV 195 (450)
T ss_dssp SSSCEEEEEEEECSSCEEEEEECTTSSE---------EEEEETTSEEEEEETTSCCCSSC-----------CCCCSEECS
T ss_pred CCceeeeeecccCCCCceEEEEcCCCCE---------EEEEeCCCcEEEEecCCcccccc-----------cceeeeccc
Confidence 444555554 45677999999999999 99999999987443221111000 001245677
Q ss_pred CCEEEEEECCC---C-eEEEEecCCeEEEEeC-CCCeeEE-EecCCcceeE--EecCCCEEEEEecCCeEEEEeCC-CCc
Q 043350 440 KRTEAMVLTAD---G-MIWSGCTNGLLVQWDG-NGNRVSD-ILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLD-GNL 510 (1133)
Q Consensus 440 ~~V~sl~~spd---g-~L~sgs~DG~I~vWd~-~g~~l~~-~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~-g~~ 510 (1133)
..|.+++|+|+ + +|++|+.|++|++||+ .++++.. +.+|...|.+ |+ ++++|++|+.|++|++||+. +++
T Consensus 196 ~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~ 274 (450)
T 2vdu_B 196 SMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKN 274 (450)
T ss_dssp SCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCE
T ss_pred CceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcE
Confidence 88888999998 8 9999999999999999 5677777 5579999998 88 99999999999999999987 466
Q ss_pred ceeeecc-------------------------ccCeEEeeec--ccceeeec-ccCCeeeccc
Q 043350 511 TASWIAH-------------------------SSPVLKLAVG--VDHIYSLA-AHGGIRGWTF 545 (1133)
Q Consensus 511 l~~~~~H-------------------------~~~V~~l~fs--~~~L~S~s-~Dg~I~lW~l 545 (1133)
+..+..| ...|.+++|+ +++|++++ .|+.|++|++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 275 LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 6666532 3578899998 88888888 8999999998
No 130
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.86 E-value=7e-20 Score=216.25 Aligned_cols=282 Identities=14% Similarity=0.103 Sum_probs=203.1
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCCCee-----eeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEe
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCL-----ELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFW 180 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~-----~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvW 180 (1133)
+.|+|++.++++++.++.|++|+..+ ++. .. .+.+|.. .|.+++ ++++.+++ +.|+.|++|
T Consensus 128 ~~~s~~~~~~~~~~~~~~i~~~d~~~---g~~-~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~s~~~d~~v~~~ 196 (433)
T 3bws_A 128 VRFIDNTRLAIPLLEDEGMDVLDINS---GQT-VRLSPPEKYKKKLG-------FVETISIPEHNELWVSQMQANAVHVF 196 (433)
T ss_dssp CEESSSSEEEEEBTTSSSEEEEETTT---CCE-EEECCCHHHHTTCC-------EEEEEEEGGGTEEEEEEGGGTEEEEE
T ss_pred EEEeCCCeEEEEeCCCCeEEEEECCC---CeE-eeecCcccccccCC-------ceeEEEEcCCCEEEEEECCCCEEEEE
Confidence 67899888899999999999999874 333 33 3456777 899999 88998888 678999999
Q ss_pred eCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEE-EEeCCCeEEEEeCCCCCCCCCCCcccccccc
Q 043350 181 NLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVW-TGHKDGKIRSWKMDQTLDDANNPFKEGLSWQ 259 (1133)
Q Consensus 181 dl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~La-Sgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~ 259 (1133)
|+.+... ......|...+.+++|+|+++.++ +++.|+.|++||+..+ +....+.
T Consensus 197 d~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~--------~~~~~~~ 251 (433)
T 3bws_A 197 DLKTLAY-----------------KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK--------LEIRKTD 251 (433)
T ss_dssp ETTTCCE-----------------EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT--------EEEEECC
T ss_pred ECCCceE-----------------EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC--------cEEEEec
Confidence 9876321 112335677899999999999885 5558999999999761 2333444
Q ss_pred cCCCCeEEEEEeeCCc-EEEEe--------CCCcEEEEeCCCCceeeEe-CCCCceEEEEeecceEEEccCceeeecccc
Q 043350 260 AHRGPVLAMIFSSQGD-LWSGG--------EGGVIKIWPWESIEKSLSL-KPEEKHMAALLVERSFIDLRAQVTVNGACS 329 (1133)
Q Consensus 260 gH~~~V~sl~fsp~g~-L~Sgs--------~DgtI~iWdl~~~~~~l~~-~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~ 329 (1133)
. ...+.+++|+|+|+ |++++ .|+.|++||+.+....... ++.. +..++.
T Consensus 252 ~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~--------------------~~~~~~ 310 (433)
T 3bws_A 252 K-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGN--------------------KRHIVS 310 (433)
T ss_dssp C-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEEC--------------------EEEEEE
T ss_pred C-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCC--------------------cceEEE
Confidence 4 35699999999998 88887 5899999999764211111 0000 111111
Q ss_pred CCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccc
Q 043350 330 ISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGF 409 (1133)
Q Consensus 330 ~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~ 409 (1133)
.+.+. .+++++ ..++.|.+||+.+++.+..+. +...+.+++|+|++.+ +++++.+....
T Consensus 311 ~~~g~-~l~~~~--------~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~---------l~~~~~~~~~~-- 369 (433)
T 3bws_A 311 GNTEN-KIYVSD--------MCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKY---------LYVSCRGPNHP-- 369 (433)
T ss_dssp CSSTT-EEEEEE--------TTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSE---------EEEEECCCCCT--
T ss_pred CCCCC-EEEEEe--------cCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCE---------EEEEecCCCcc--
Confidence 12222 233333 678999999999999888876 5567889999999987 77665543210
Q ss_pred cccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--Ee
Q 043350 410 LQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FC 486 (1133)
Q Consensus 410 ~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs 486 (1133)
...++++|+.||.|++||. +++.+..+..+ ..+.+ |+
T Consensus 370 ---------------------------------------~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s 409 (433)
T 3bws_A 370 ---------------------------------------TEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVS 409 (433)
T ss_dssp ---------------------------------------TTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEEC
T ss_pred ---------------------------------------ccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEc
Confidence 1125678899999999999 56777777664 45555 99
Q ss_pred cCCCEEEEEec-CCeEEEEeCCC
Q 043350 487 TYGSRMYVGYV-SGYLQILDLDG 508 (1133)
Q Consensus 487 ~dg~~Lasgs~-DG~I~vwd~~g 508 (1133)
|+|++|++++. |+.|++|++++
T Consensus 410 ~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 410 PDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TTSCEEEEEETTTTEEEEEEETT
T ss_pred CCCCEEEEEECCCCeEEEEEecC
Confidence 99999998875 99999999864
No 131
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.85 E-value=4.4e-20 Score=206.81 Aligned_cols=267 Identities=12% Similarity=0.035 Sum_probs=163.0
Q ss_pred ecCCcEEEeeCCCC-----CCcCcCCCcccc----CCCCCCCce--eeccCCCCeEEEEEeCC----CCEEEEEeCCCeE
Q 043350 172 GQECGVRFWNLEDS-----YEPGAGIGGRVR----RGDEDAAPF--YESANTSPTMCLMVDCG----NRLVWTGHKDGKI 236 (1133)
Q Consensus 172 s~Dg~VrvWdl~~~-----~~~~~gh~~~v~----~g~~~~~~~--~~~~h~s~V~~la~spd----~~~LaSgs~Dg~V 236 (1133)
....+|++|+..+. ..++.+|+-.|. ..+...-.- .-..+...|..|+++|+ ++++++++.+ +
T Consensus 60 ~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~ 137 (356)
T 2w18_A 60 ACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNI--K 137 (356)
T ss_dssp EESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEE--E
T ss_pred eccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCe--E
Confidence 77899999998774 334555552100 011100000 01123446899999999 9999998854 8
Q ss_pred EEEeCCCCCCCCCCCcccccc-cccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecce
Q 043350 237 RSWKMDQTLDDANNPFKEGLS-WQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERS 314 (1133)
Q Consensus 237 ~vWd~~~~~~~~~~~~~~~~~-l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s 314 (1133)
++|++.. . +.+.+ ..+|.+.|..++|+|+|+ +.+-. .++....
T Consensus 138 ~v~~l~~--g------~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~------------------~~~~~v~--------- 182 (356)
T 2w18_A 138 AVLGLTK--R------RLVSSSGTLSDQQVEVMTFAEDGGGKENQF------------------LMPPEET--------- 182 (356)
T ss_dssp EEEEETT--T------EEEEEESSSTTCEEEEEEECTTSCEEEEEE------------------ECCCSSC---------
T ss_pred EEEecCC--C------cEEEecccCCCCcEEEEEECCCCceeeeec------------------cCCCcee---------
Confidence 8899864 1 44444 578999999999999888 55321 1222221
Q ss_pred EEEccCceeeeccccCC-CCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCc---ceeEEEeCCCCCcccc
Q 043350 315 FIDLRAQVTVNGACSIS-STEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGH---IENRVDTQSVQDQPVE 390 (1133)
Q Consensus 315 ~~d~~~~~~v~~~~~~~-~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~---~v~~l~~sp~g~~~~e 390 (1133)
.+.+. + +++..+++++ +.|++|+|||+.+|++++++.+|.. .+.+++|+|++.+...
T Consensus 183 ~l~fs-----------~~~g~~~~LaSg--------S~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs 243 (356)
T 2w18_A 183 ILTFA-----------EVQGMQEALLGT--------TIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIV 243 (356)
T ss_dssp EEEEE-----------EEETSTTEEEEE--------ETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEE
T ss_pred eEEee-----------ccCCCCceEEEe--------cCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEE
Confidence 11111 1 2344455666 8899999999999999999987544 4667799999876100
Q ss_pred ---ccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEe
Q 043350 391 ---DEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWD 466 (1133)
Q Consensus 391 ---~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd 466 (1133)
+.....+++|+.|++++.|+......+. +..+++ |+ +|...+.+..++ + .+++|+.||+|+|||
T Consensus 244 ~s~~~~~w~laSGs~D~tIklWd~~tgk~l~-----v~~~~~-p~----Gh~~~~lsg~~s--g~~lASgS~DgTIkIWD 311 (356)
T 2w18_A 244 LSHPCAKESESLRSPVFQLIVINPKTTLSVG-----VMLYCL-PP----GQAGRFLEGDVK--DHCAAAILTSGTIAIWD 311 (356)
T ss_dssp EC------------CCEEEEEEETTTTEEEE-----EEEECC-CT----TCCCCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred eccCCCcceeeccCCCcEEEEEECCCCEEEE-----EEEeec-cC----CCcceeEccccC--CCEEEEEcCCCcEEEEE
Confidence 0000013667778888755543222210 111111 22 343344333333 6 899999999999999
Q ss_pred C-CCCeeEEEecCCccee---EEecCCCEEEEEecCCeEEEEeC
Q 043350 467 G-NGNRVSDILHHQCAVQ---CFCTYGSRMYVGYVSGYLQILDL 506 (1133)
Q Consensus 467 ~-~g~~l~~~~~h~~~V~---~fs~dg~~Lasgs~DG~I~vwd~ 506 (1133)
+ +|+++.++.+|...+. +|+|||++|++|+.|++|+|||+
T Consensus 312 l~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 312 LLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9 7799999998876543 39999999999999999999995
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.84 E-value=1.4e-19 Score=213.57 Aligned_cols=285 Identities=13% Similarity=0.081 Sum_probs=202.4
Q ss_pred ccccCCCCC-EEEEec----CCC----eEEeccC--CCCCCCCCCe--eeeccCCCccccccceEEEEE-eC--------
Q 043350 108 HKPFQPMVE-FIGSGG----GTG----IFKVPSR--AAVHPGRPPC--LELRPHPLKETQAGRFLRNIA-CT-------- 165 (1133)
Q Consensus 108 ~~~~~p~g~-~lasgs----~dg----~irlW~~--~~~~~g~~~~--~~l~~H~~~~~~~g~~V~~v~-s~-------- 165 (1133)
+..+.+.|. ++++|+ .+| .++|||. .+ ++. + ..+.+|.. .++.++ .+
T Consensus 67 ~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~---~~~-~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~ 135 (415)
T 2hqs_A 67 PAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAP---GTV-LAQNSYKVNKQ-------WLRYAGHTASDEVFEKL 135 (415)
T ss_dssp HHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSST---TCE-EEEEEEEECGG-------GHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCC---CCE-EeeeEEEcChh-------HHHHHHHHHHHHHHHHH
Confidence 355566664 566776 568 9999999 63 554 5 45778876 455444 21
Q ss_pred ------CCCeEE--ecC------CcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEe
Q 043350 166 ------DTQLWA--GQE------CGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGH 231 (1133)
Q Consensus 166 ------dg~lla--s~D------g~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs 231 (1133)
.+..++ +.+ +.|++||+++.. ...+..|...|.+++|+|+|+.|++++
T Consensus 136 ~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~------------------~~~l~~~~~~v~~~~~Spdg~~la~~s 197 (415)
T 2hqs_A 136 TGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN------------------QFVVHRSPQPLMSPAWSPDGSKLAYVT 197 (415)
T ss_dssp HSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS------------------CEEEEEESSCEEEEEECTTSSEEEEEE
T ss_pred cCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC------------------CEEEeCCCCcceeeEEcCCCCEEEEEE
Confidence 144444 443 799999987521 123445777999999999999999999
Q ss_pred CCC---eEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EE-EEeCCCc--EEEEeCCCCceeeEeCCCCc
Q 043350 232 KDG---KIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LW-SGGEGGV--IKIWPWESIEKSLSLKPEEK 304 (1133)
Q Consensus 232 ~Dg---~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~-Sgs~Dgt--I~iWdl~~~~~~l~~~~~~~ 304 (1133)
.|+ .|++||+.+ .....+..|.+.+.+++|+|+|+ |+ +++.|+. |++||+.
T Consensus 198 ~~~~~~~i~~~d~~t---------g~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~------------- 255 (415)
T 2hqs_A 198 FESGRSALVIQTLAN---------GAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA------------- 255 (415)
T ss_dssp CTTSSCEEEEEETTT---------CCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT-------------
T ss_pred ecCCCcEEEEEECCC---------CcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECC-------------
Confidence 885 999999987 33346778888999999999999 66 6666654 6666653
Q ss_pred eEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCC
Q 043350 305 HMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSV 384 (1133)
Q Consensus 305 ~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~ 384 (1133)
+++. ..+..+...+.+++|+|+
T Consensus 256 ---------------------------------------------------------~~~~-~~l~~~~~~~~~~~~spd 277 (415)
T 2hqs_A 256 ---------------------------------------------------------SGQI-RQVTDGRSNNTEPTWFPD 277 (415)
T ss_dssp ---------------------------------------------------------TCCE-EECCCCSSCEEEEEECTT
T ss_pred ---------------------------------------------------------CCCE-EeCcCCCCcccceEECCC
Confidence 2222 234445566788999999
Q ss_pred CCccccccceEEEEeeCC-CCccc--cccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecC-
Q 043350 385 QDQPVEDEMKVKFVSSNK-KEKPH--GFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTN- 459 (1133)
Q Consensus 385 g~~~~e~e~~v~lasgs~-Dg~i~--~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~D- 459 (1133)
++. |+.++. ++..+ .++... ..+.. +..+...+.+++|+|+| +|++++.+
T Consensus 278 g~~---------l~~~s~~~g~~~i~~~d~~~--------~~~~~--------l~~~~~~~~~~~~spdG~~l~~~~~~~ 332 (415)
T 2hqs_A 278 SQN---------LAFTSDQAGRPQVYKVNING--------GAPQR--------ITWEGSQNQDADVSSDGKFMVMVSSNG 332 (415)
T ss_dssp SSE---------EEEEECTTSSCEEEEEETTS--------SCCEE--------CCCSSSEEEEEEECTTSSEEEEEEECS
T ss_pred CCE---------EEEEECCCCCcEEEEEECCC--------CCEEE--------EecCCCcccCeEECCCCCEEEEEECcC
Confidence 998 777765 44332 222111 11111 22344567788999999 78877764
Q ss_pred --CeEEEEeCCCCeeEEEecCCcceeE--EecCCCEEEEEecCC---eEEEEeCCCCcceeeeccccCeEEeeec
Q 043350 460 --GLLVQWDGNGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSG---YLQILDLDGNLTASWIAHSSPVLKLAVG 527 (1133)
Q Consensus 460 --G~I~vWd~~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG---~I~vwd~~g~~l~~~~~H~~~V~~l~fs 527 (1133)
+.|.+||+.+..+..+..+. .+.+ |+|+|++|++++.++ .|++||+.++.+..+.+|.+.|.+++|+
T Consensus 333 g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~ 406 (415)
T 2hqs_A 333 GQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWS 406 (415)
T ss_dssp SCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEEC
T ss_pred CceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCccc
Confidence 58999999654445666654 5655 999999999998877 8999999998888999999999999998
No 133
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.84 E-value=1.1e-19 Score=209.88 Aligned_cols=234 Identities=9% Similarity=0.058 Sum_probs=160.7
Q ss_pred ccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCC
Q 043350 253 KEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSIS 331 (1133)
Q Consensus 253 ~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~ 331 (1133)
..+..+.+|.+.|++++|+|+|+ |++|+.|+ +++|+++...........+.. .+.+. +
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~---------~~~~~-----------~ 68 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLS---------KVRML-----------H 68 (355)
T ss_dssp ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCC---------EEEEC-----------T
T ss_pred CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeE---------EEEEc-----------C
Confidence 33446688999999999999999 88877665 789998763222222111111 11111 2
Q ss_pred CCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccc
Q 043350 332 STEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQ 411 (1133)
Q Consensus 332 ~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~ 411 (1133)
.++.. .+++ +.|+.|++||+.+++++..+. +...|.++.++++. ++.+ .++.++.|+.
T Consensus 69 ~~~~~-~~~~--------~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~-----------~~~~-~~~~i~i~d~ 126 (355)
T 3vu4_A 69 RTNYV-AFVT--------GVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF-----------IVVS-YGDVISVFKF 126 (355)
T ss_dssp TSSEE-EEEC--------SSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE-----------EEEE-ETTEEEEEES
T ss_pred CCCEE-EEEE--------CCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE-----------EEEE-EcCEEEEEEC
Confidence 33332 2333 567899999999999999887 45689999998865 2233 3566764443
Q ss_pred ccc-ceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEE--EecCCeEEEEeCCC-C----------------e
Q 043350 412 RSR-NAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWS--GCTNGLLVQWDGNG-N----------------R 471 (1133)
Q Consensus 412 ~~~-~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~s--gs~DG~I~vWd~~g-~----------------~ 471 (1133)
... ..+.... . ....+++++ ..++. |+.||.|++||+.. . +
T Consensus 127 ~~~~~~~~~~~---------------~---~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~ 187 (355)
T 3vu4_A 127 GNPWKRITDDI---------------R---FGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGK 187 (355)
T ss_dssp STTCCBSSCCE---------------E---EEEEEEEET-TEEEEEESSCTTCEEEEECCC------------------C
T ss_pred CCCceeeEEec---------------c---CCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcc
Confidence 221 1111000 0 112233444 53443 78999999999954 2 2
Q ss_pred eEEEecCCcceeE--EecCCCEEEEEecCCe-EEEEeCC-CCcceeee-c-cccCeEEeeec--ccceeeecccCCeeec
Q 043350 472 VSDILHHQCAVQC--FCTYGSRMYVGYVSGY-LQILDLD-GNLTASWI-A-HSSPVLKLAVG--VDHIYSLAAHGGIRGW 543 (1133)
Q Consensus 472 l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~-I~vwd~~-g~~l~~~~-~-H~~~V~~l~fs--~~~L~S~s~Dg~I~lW 543 (1133)
+..+.+|...|++ |+|+|++|++|+.||+ |++||+. ++++..+. + |.+.|.+++|+ +++|++++.|++|++|
T Consensus 188 ~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw 267 (355)
T 3vu4_A 188 GVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVF 267 (355)
T ss_dssp CEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEE
T ss_pred cEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEE
Confidence 7889999999999 9999999999999998 9999997 67888888 6 99999999999 8899999999999999
Q ss_pred cccCC
Q 043350 544 TFTSP 548 (1133)
Q Consensus 544 ~l~s~ 548 (1133)
++..+
T Consensus 268 ~~~~~ 272 (355)
T 3vu4_A 268 EIFND 272 (355)
T ss_dssp ESSCC
T ss_pred EccCC
Confidence 98764
No 134
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.82 E-value=1.8e-18 Score=201.18 Aligned_cols=252 Identities=10% Similarity=0.071 Sum_probs=181.1
Q ss_pred ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEE-EEEeCCCeEEEEeCCCCCCCCCC
Q 043350 172 GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLV-WTGHKDGKIRSWKMDQTLDDANN 250 (1133)
Q Consensus 172 s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~L-aSgs~Dg~V~vWd~~~~~~~~~~ 250 (1133)
+.|+.|++||+.+.... .....| ..+.+++|+|+++.| ++++.|++|++||+..+
T Consensus 9 ~~d~~v~v~d~~~~~~~-----------------~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~------ 64 (391)
T 1l0q_A 9 SESDNISVIDVTSNKVT-----------------ATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN------ 64 (391)
T ss_dssp TTTTEEEEEETTTTEEE-----------------EEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT------
T ss_pred CCCCEEEEEECCCCeEE-----------------EEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCC------
Confidence 67999999999763211 122233 358999999999876 67779999999999761
Q ss_pred CcccccccccCCCCeEEEEEeeCCc-E-EEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccc
Q 043350 251 PFKEGLSWQAHRGPVLAMIFSSQGD-L-WSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGAC 328 (1133)
Q Consensus 251 ~~~~~~~l~gH~~~V~sl~fsp~g~-L-~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~ 328 (1133)
+....+..|. .|.+++|+|+|+ | ++++.|+.|++||+.+
T Consensus 65 --~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~------------------------------------ 105 (391)
T 1l0q_A 65 --NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTS------------------------------------ 105 (391)
T ss_dssp --EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT------------------------------------
T ss_pred --eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCC------------------------------------
Confidence 3344444444 999999999999 6 4555678999988753
Q ss_pred cCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEE-EeeCCCCccc
Q 043350 329 SISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKF-VSSNKKEKPH 407 (1133)
Q Consensus 329 ~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~l-asgs~Dg~i~ 407 (1133)
++.+..+..+ ..+.+++|+|+++. + ++++.++.|+
T Consensus 106 ----------------------------------~~~~~~~~~~-~~~~~~~~s~dg~~---------l~~~~~~~~~v~ 141 (391)
T 1l0q_A 106 ----------------------------------NTVAGTVKTG-KSPLGLALSPDGKK---------LYVTNNGDKTVS 141 (391)
T ss_dssp ----------------------------------TEEEEEEECS-SSEEEEEECTTSSE---------EEEEETTTTEEE
T ss_pred ----------------------------------CeEEEEEeCC-CCcceEEECCCCCE---------EEEEeCCCCEEE
Confidence 2222223222 34678999999987 6 7888899887
Q ss_pred cccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eE-EEEecCCeEEEEeCC-CCeeEEEecCCcceeE
Q 043350 408 GFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MI-WSGCTNGLLVQWDGN-GNRVSDILHHQCAVQC 484 (1133)
Q Consensus 408 ~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L-~sgs~DG~I~vWd~~-g~~l~~~~~h~~~V~~ 484 (1133)
.|+...... +..+ .....+.+++++|++ .| ++++.|+.|++||+. ++++..+.. ...+.+
T Consensus 142 ~~d~~~~~~-------~~~~---------~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~ 204 (391)
T 1l0q_A 142 VINTVTKAV-------INTV---------SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSG 204 (391)
T ss_dssp EEETTTTEE-------EEEE---------ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEE
T ss_pred EEECCCCcE-------EEEE---------ecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccc
Confidence 555432111 1111 112346788899999 66 677889999999994 455555554 455665
Q ss_pred --EecCCCEEEEEe---cCCeEEEEeCC-CCcceeeeccccCeEEeeec--ccce-eeecccCCeeeccccCC
Q 043350 485 --FCTYGSRMYVGY---VSGYLQILDLD-GNLTASWIAHSSPVLKLAVG--VDHI-YSLAAHGGIRGWTFTSP 548 (1133)
Q Consensus 485 --fs~dg~~Lasgs---~DG~I~vwd~~-g~~l~~~~~H~~~V~~l~fs--~~~L-~S~s~Dg~I~lW~l~s~ 548 (1133)
|+|+|++|++++ .++.|++||+. ++++..+..|. .+.+++|+ +++| ++++.|+.|++||+.+.
T Consensus 205 ~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 205 IAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred eEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 999999999988 68999999997 45666676665 47889998 6666 67789999999998763
No 135
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.81 E-value=8.7e-18 Score=221.62 Aligned_cols=360 Identities=9% Similarity=-0.030 Sum_probs=235.5
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecC----C--cEEE
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQE----C--GVRF 179 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~D----g--~Vrv 179 (1133)
+.|+| +.||.++. +.|++|+.. +.. ...+..|.. .+.+++ ||||+.|| +.+ + .|++
T Consensus 20 ~~~S~--~~iaf~~~-~~l~~~~~~----gg~-~~~lt~~~~-------~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~ 84 (1045)
T 1k32_A 20 PDIHG--DRIIFVCC-DDLWEHDLK----SGS-TRKIVSNLG-------VINNARFFPDGRKIAIRVMRGSSLNTADLYF 84 (1045)
T ss_dssp EEEET--TEEEEEET-TEEEEEETT----TCC-EEEEECSSS-------EEEEEEECTTSSEEEEEEEESTTCCEEEEEE
T ss_pred cEEeC--CEEEEEEC-CcEEEEECC----CCc-EEEeeeCCC-------cccCeEECCCCCEEEEEEeeccCCCCCeEEE
Confidence 55564 58888776 689999987 444 567888988 899999 99999999 332 3 7999
Q ss_pred eeCCCC-CCcCcCCCccccCCCCCCCceeeccCCCCe-------EEEEEeCCCCEEEEEeCC------CeEEEEeCCCCC
Q 043350 180 WNLEDS-YEPGAGIGGRVRRGDEDAAPFYESANTSPT-------MCLMVDCGNRLVWTGHKD------GKIRSWKMDQTL 245 (1133)
Q Consensus 180 Wdl~~~-~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V-------~~la~spd~~~LaSgs~D------g~V~vWd~~~~~ 245 (1133)
|++.+. ...+. .|...+ .+++|+|||+++++++.+ ..|.+|++.++.
T Consensus 85 ~d~~~g~~~~lt-------------------~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~ 145 (1045)
T 1k32_A 85 YNGENGEIKRIT-------------------YFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN 145 (1045)
T ss_dssp EETTTTEEEECC-------------------CCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE
T ss_pred EECCCCCeEEcc-------------------cCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCC
Confidence 998763 22222 333344 899999999988888765 357777775422
Q ss_pred CC--CCCC----------------------c-----------------ccccccccCCCCeEEEEEeeCCc-EEEEeCCC
Q 043350 246 DD--ANNP----------------------F-----------------KEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGG 283 (1133)
Q Consensus 246 ~~--~~~~----------------------~-----------------~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~Dg 283 (1133)
.. .... + .....+.+|...+.++.|+++ . +++++.|+
T Consensus 146 ~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg 224 (1045)
T 1k32_A 146 FVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDG 224 (1045)
T ss_dssp EEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTS
T ss_pred eEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccC
Confidence 10 0000 0 011223456666666677665 5 55666666
Q ss_pred cEEEEeCCC---CceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeec
Q 043350 284 VIKIWPWES---IEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDA 360 (1133)
Q Consensus 284 tI~iWdl~~---~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~ 360 (1133)
+++||.++. ....+..+ . .-.....+.|+...++. .++.|.+||+
T Consensus 225 ~~~l~~~~~~g~~~~~l~~~------------------------------~-~~~~~~~SpDG~~la~~-~~~~i~~~d~ 272 (1045)
T 1k32_A 225 FGQIYSTDLDGKDLRKHTSF------------------------------T-DYYPRHLNTDGRRILFS-KGGSIYIFNP 272 (1045)
T ss_dssp SCEEEEEETTSCSCEECCCC------------------------------C-SSCEEEEEESSSCEEEE-ETTEEEEECT
T ss_pred ceEEEEEeCCCCcceEecCC------------------------------C-CcceeeEcCCCCEEEEE-eCCEEEEecC
Confidence 666665432 01111000 0 01112334455544443 4788999998
Q ss_pred CCCceeEEEec-----------CCcceeEEEeC-CCCCccccccceEEEEeeCCCCcccccc--ccccceeeccCC-ceE
Q 043350 361 RSKELLKVFNI-----------EGHIENRVDTQ-SVQDQPVEDEMKVKFVSSNKKEKPHGFL--QRSRNAIMGAAD-AVR 425 (1133)
Q Consensus 361 ~tg~~l~~~~~-----------h~~~v~~l~~s-p~g~~~~e~e~~v~lasgs~Dg~i~~~~--~~~~~~~~~~~~-~V~ 425 (1133)
..+ .+..+.. +...+..++|+ |+++. ++.++ ++.+..++ ......+..+.. .+.
T Consensus 273 ~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~---------la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~ 341 (1045)
T 1k32_A 273 DTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDL---------IAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYV 341 (1045)
T ss_dssp TTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGC---------EEEEE-TTEEEEECTTSSBEEECSCCSCEEEE
T ss_pred Cce-EeeeeccCcccccccccccccccceeeecCCCCCE---------EEEEE-cCEEEEEcCCCCceEEccCCCcceEE
Confidence 443 3445544 23468899999 99998 77776 55554221 111111222222 222
Q ss_pred EEEEe-------------------cCC----cccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCc
Q 043350 426 RVATR-------------------GAG----AFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQC 480 (1133)
Q Consensus 426 ~v~~~-------------------p~g----~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~ 480 (1133)
.++|+ ..+ .+.++...+..++|+||| .|++++.++.|++||+ .++....+..|..
T Consensus 342 ~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~ 421 (1045)
T 1k32_A 342 RRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA 421 (1045)
T ss_dssp EECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS
T ss_pred eeeEcCCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCC
Confidence 22222 111 133566789999999999 9999999999999999 5566666667887
Q ss_pred ceeE--EecCCCEEEEEecCC----------eEEEEeCCCCcceeeeccccCeEEeeec--ccceeeecccCCeeecccc
Q 043350 481 AVQC--FCTYGSRMYVGYVSG----------YLQILDLDGNLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFT 546 (1133)
Q Consensus 481 ~V~~--fs~dg~~Lasgs~DG----------~I~vwd~~g~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~ 546 (1133)
.+.+ |+|||++|++++.++ .|++||+.+..+..+..|...+..++|+ +++|++++.++..++|+..
T Consensus 422 ~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 422 MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred CccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 7766 999999999888654 9999999875577788898889999999 8899999999999999854
No 136
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.79 E-value=2.2e-17 Score=217.84 Aligned_cols=347 Identities=9% Similarity=-0.074 Sum_probs=235.1
Q ss_pred eEEEEE-eCCCCeEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCC--
Q 043350 158 FLRNIA-CTDTQLWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKD-- 233 (1133)
Q Consensus 158 ~V~~v~-s~dg~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~D-- 233 (1133)
.+...+ ++ +.++ ..++.|++|++.+.. ...+..|...+.+++|||||++||+++.+
T Consensus 16 ~~~~~~~S~--~~iaf~~~~~l~~~~~~gg~------------------~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~ 75 (1045)
T 1k32_A 16 LLLNPDIHG--DRIIFVCCDDLWEHDLKSGS------------------TRKIVSNLGVINNARFFPDGRKIAIRVMRGS 75 (1045)
T ss_dssp CCEEEEEET--TEEEEEETTEEEEEETTTCC------------------EEEEECSSSEEEEEEECTTSSEEEEEEEEST
T ss_pred eEeCcEEeC--CEEEEEECCcEEEEECCCCc------------------EEEeeeCCCcccCeEECCCCCEEEEEEeecc
Confidence 566666 63 5677 666899999987632 12344677789999999999999988654
Q ss_pred ----CeEEEEeCCCCCCCCCCCcccccccccCCCCe-------EEEEEeeCCc-EEEEeCC------CcEEEEeCCCCc-
Q 043350 234 ----GKIRSWKMDQTLDDANNPFKEGLSWQAHRGPV-------LAMIFSSQGD-LWSGGEG------GVIKIWPWESIE- 294 (1133)
Q Consensus 234 ----g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V-------~sl~fsp~g~-L~Sgs~D------gtI~iWdl~~~~- 294 (1133)
..|++|++.+ .....+..|...+ .+++|+|+|+ +++++.+ ..|.+|++.+..
T Consensus 76 ~~~~~~i~~~d~~~---------g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (1045)
T 1k32_A 76 SLNTADLYFYNGEN---------GEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINF 146 (1045)
T ss_dssp TCCEEEEEEEETTT---------TEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEE
T ss_pred CCCCCeEEEEECCC---------CCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCe
Confidence 4799999987 4456778888888 9999999999 8888755 357777775531
Q ss_pred --------eeeEeCCCCceEEEEeec--------------ceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCC
Q 043350 295 --------KSLSLKPEEKHMAALLVE--------------RSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQP 352 (1133)
Q Consensus 295 --------~~l~~~~~~~~l~s~~~d--------------~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d 352 (1133)
..+.+++ + .++++... ..+|..........+..+.........+++ .+.+.+..+
T Consensus 147 ~~l~~~~~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~d 223 (1045)
T 1k32_A 147 VPLNLGPATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDID 223 (1045)
T ss_dssp EECCSCSCSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTT
T ss_pred EEecCCCcceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEecc
Confidence 1223344 4 44443211 112221111111112222222233333343 333334567
Q ss_pred CceeEeecCC-CceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccc--cccceeec----------
Q 043350 353 LSFSLWDARS-KELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQ--RSRNAIMG---------- 419 (1133)
Q Consensus 353 ~~I~lWD~~t-g~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~--~~~~~~~~---------- 419 (1133)
+.+.||++.. +.....+..+. .+..++|+|+++. ++.+ .++.+..|+. ..+..+.+
T Consensus 224 g~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~---------la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~ 292 (1045)
T 1k32_A 224 GFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRR---------ILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRI 292 (1045)
T ss_dssp SSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSC---------EEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEE
T ss_pred CceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCE---------EEEE-eCCEEEEecCCceEeeeeccCccccccccc
Confidence 8889998763 55556666555 3567799999998 7776 4666663332 21222222
Q ss_pred -cCCceEEEEEe-cCCc----------------------ccCCCC-CEEEEEECCCC-eEEEEecCCeEE-EEeCCCCee
Q 043350 420 -AADAVRRVATR-GAGA----------------------FVDDTK-RTEAMVLTADG-MIWSGCTNGLLV-QWDGNGNRV 472 (1133)
Q Consensus 420 -~~~~V~~v~~~-p~g~----------------------~~~h~~-~V~sl~~spdg-~L~sgs~DG~I~-vWd~~g~~l 472 (1133)
+...+..++|+ |+|. +..+.. .+..++|+ || .|++++.++.+. +|+..+...
T Consensus 293 ~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~ 371 (1045)
T 1k32_A 293 ISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA 371 (1045)
T ss_dssp EECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE
T ss_pred ccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc
Confidence 23357888999 8875 223444 78889999 99 888888888898 999976555
Q ss_pred EEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCC-CcceeeeccccCeEEeeec--ccceeeecccC---------
Q 043350 473 SDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG-NLTASWIAHSSPVLKLAVG--VDHIYSLAAHG--------- 538 (1133)
Q Consensus 473 ~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g-~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg--------- 538 (1133)
..+..|...+.+ |+|||++|++++.++.|++||+.+ ++...+.+|.+.|.+++|+ +++|++++.++
T Consensus 372 ~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~ 451 (1045)
T 1k32_A 372 EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM 451 (1045)
T ss_dssp EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCC
Confidence 566677777776 999999999999999999999975 5555556899999999999 88898887754
Q ss_pred -CeeeccccCC
Q 043350 539 -GIRGWTFTSP 548 (1133)
Q Consensus 539 -~I~lW~l~s~ 548 (1133)
.|++||+...
T Consensus 452 ~~i~l~d~~~g 462 (1045)
T 1k32_A 452 QAIHVYDMEGR 462 (1045)
T ss_dssp EEEEEEETTTT
T ss_pred CeEEEEECCCC
Confidence 8999998653
No 137
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.79 E-value=1.6e-17 Score=202.72 Aligned_cols=324 Identities=9% Similarity=0.032 Sum_probs=212.0
Q ss_pred ccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeC--CC
Q 043350 110 PFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNL--ED 184 (1133)
Q Consensus 110 ~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl--~~ 184 (1133)
.++|++.++++++.|++|.+||..+ ++. +.++..+. .+..++ +++|++++ +.|++|++||+ .+
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t---~~~-~~~i~~g~--------~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t 211 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDS---KKI-VKVIDTGY--------AVHISRMSASGRYLLVIGRDARIDMIDLWAKE 211 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTT---CCE-EEEEECST--------TEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCC---ceE-EEEEecCc--------ccceEEECCCCCEEEEECCCCeEEEEECcCCC
Confidence 3789999999999999999999874 444 66665322 366787 99998887 78899999999 43
Q ss_pred CCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC----CCCEEEEEeC-CCeEEEEeCCCCCCCCCCCcccccccc
Q 043350 185 SYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC----GNRLVWTGHK-DGKIRSWKMDQTLDDANNPFKEGLSWQ 259 (1133)
Q Consensus 185 ~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp----d~~~LaSgs~-Dg~V~vWd~~~~~~~~~~~~~~~~~l~ 259 (1133)
.... .... +...+..++|+| ++++|++++. +++|.|||.... +.+..+.
T Consensus 212 ~~~~-----------------~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~--------~~~~~i~ 265 (543)
T 1nir_A 212 PTKV-----------------AEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL--------EPKQIVS 265 (543)
T ss_dssp CEEE-----------------EEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC--------CEEEEEE
T ss_pred CcEE-----------------EEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc--------ccceeec
Confidence 2110 0111 233579999999 9999999884 899999998762 2233332
Q ss_pred c----------CCC-CeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCcee-eEeCCCCceEEEEeecceEEEccCceeee
Q 043350 260 A----------HRG-PVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKS-LSLKPEEKHMAALLVERSFIDLRAQVTVN 325 (1133)
Q Consensus 260 g----------H~~-~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~-l~~~~~~~~l~s~~~d~s~~d~~~~~~v~ 325 (1133)
. |.. .+.++.++|++. +++...+++|.+||+.+.... +...+.+.. ..
T Consensus 266 ~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~------------------~~ 327 (543)
T 1nir_A 266 TRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPF------------------LH 327 (543)
T ss_dssp CCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSS------------------CC
T ss_pred ccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcC------------------cc
Confidence 2 333 799999999877 888889999999999763110 000000000 11
Q ss_pred ccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEec----CCcceeEEEeCCC-CCccccccceEEEEee
Q 043350 326 GACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNI----EGHIENRVDTQSV-QDQPVEDEMKVKFVSS 400 (1133)
Q Consensus 326 ~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~----h~~~v~~l~~sp~-g~~~~e~e~~v~lasg 400 (1133)
.+...+++.. +++++ ..+++|.+||+.+++++..+.. |......+ ++|+ +.. ++++
T Consensus 328 ~~~~spdg~~-l~va~--------~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~---------~~s~ 388 (543)
T 1nir_A 328 DGGWDSSHRY-FMTAA--------NNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPV---------WSTS 388 (543)
T ss_dssp CEEECTTSCE-EEEEE--------GGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEE---------EEEE
T ss_pred CceECCCCCE-EEEEe--------cCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccE---------EEec
Confidence 1111122221 23333 5688999999999999998875 43322233 4666 545 6776
Q ss_pred C-CCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEe-------cCCeEEEEeC-CCC
Q 043350 401 N-KKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGC-------TNGLLVQWDG-NGN 470 (1133)
Q Consensus 401 s-~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs-------~DG~I~vWd~-~g~ 470 (1133)
. .|++|..|+.... +|....+.+.- .+..+...+..++++|+| .|++++ .+++|.+||. +++
T Consensus 389 ~~~d~~V~v~d~~~~----~~~~~~~~~v~----~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 389 HLGDGSISLIGTDPK----NHPQYAWKKVA----ELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp BSSSSEEEEEECCTT----TCTTTBTSEEE----EEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred cCCCceEEEEEeCCC----CCchhcCeEEE----EEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 5 5788864443320 11100011110 123455567778899999 999887 3789999999 556
Q ss_pred ee-EEE--------ecCCcceeE--EecCCCEEEEEe-----cCCeEEEEeCC-CCcceeeec
Q 043350 471 RV-SDI--------LHHQCAVQC--FCTYGSRMYVGY-----VSGYLQILDLD-GNLTASWIA 516 (1133)
Q Consensus 471 ~l-~~~--------~~h~~~V~~--fs~dg~~Lasgs-----~DG~I~vwd~~-g~~l~~~~~ 516 (1133)
++ ..+ ..+...+.. |+++|++|+++. .|+.|.|||.+ +++++.++.
T Consensus 461 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 523 (543)
T 1nir_A 461 AKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 523 (543)
T ss_dssp SCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred CCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecC
Confidence 55 443 245566766 999999999773 47999999987 466665554
No 138
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.78 E-value=1.7e-17 Score=210.46 Aligned_cols=333 Identities=7% Similarity=-0.010 Sum_probs=209.7
Q ss_pred ccccCCCCCEEEEecC-CC-----eEEeccCCCCCCCCCCeeeeccCCCcc----------------cccc-ceEEEEE-
Q 043350 108 HKPFQPMVEFIGSGGG-TG-----IFKVPSRAAVHPGRPPCLELRPHPLKE----------------TQAG-RFLRNIA- 163 (1133)
Q Consensus 108 ~~~~~p~g~~lasgs~-dg-----~irlW~~~~~~~g~~~~~~l~~H~~~~----------------~~~g-~~V~~v~- 163 (1133)
.+.|+|||++|++++. |+ .|++|+..+ ++. ...+..|...+ ...+ ..+.+++
T Consensus 41 ~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~---g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 41 KPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS---GQT-RLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp EEEECTTSSEEEEEECCSSCTTEEEEEEEETTT---CCE-EEEECGGGTC--------------------CCEESCCCEE
T ss_pred CceEecCCCEEEEEeccCCCCcccEEEEEECCC---Cce-eEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 4789999999999998 88 899999874 333 44444332210 0000 1366778
Q ss_pred eCCCCeEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q 043350 164 CTDTQLWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMD 242 (1133)
Q Consensus 164 s~dg~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~ 242 (1133)
+|||++|+ +.++.|++||+.+..... ......|...+.+++|+|||++|+.++. +.|++||+.
T Consensus 117 SpDg~~l~~~~~~~i~~~d~~~~~~~~---------------~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~ 180 (741)
T 2ecf_A 117 SPDAQRLLFPLGGELYLYDLKQEGKAA---------------VRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLA 180 (741)
T ss_dssp CTTSSEEEEEETTEEEEEESSSCSTTS---------------CCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETT
T ss_pred CCCCCEEEEEeCCcEEEEECCCCCcce---------------EEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecC
Confidence 99999998 667999999987641000 0112345567999999999999999874 699999998
Q ss_pred CCCCCCCCCcccccccccCCC----------------CeEEEEEeeCCc-EEEEeCCC----------------------
Q 043350 243 QTLDDANNPFKEGLSWQAHRG----------------PVLAMIFSSQGD-LWSGGEGG---------------------- 283 (1133)
Q Consensus 243 ~~~~~~~~~~~~~~~l~gH~~----------------~V~sl~fsp~g~-L~Sgs~Dg---------------------- 283 (1133)
++. .......+.. .+.+++|+|||+ |++++.|+
T Consensus 181 ~g~--------~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~ 252 (741)
T 2ecf_A 181 SGR--------QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQR 252 (741)
T ss_dssp TTE--------EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEE
T ss_pred CCC--------EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEee
Confidence 621 1112222222 247899999999 99888765
Q ss_pred -----------cEEEEeCCC-CceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecC
Q 043350 284 -----------VIKIWPWES-IEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQ 351 (1133)
Q Consensus 284 -----------tI~iWdl~~-~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~ 351 (1133)
.|.+||+.+ ........... ....+..+.. +++..+++.+.+.. ..
T Consensus 253 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~----------------~~~~~~~~~~-pDg~~l~~~~~~~~-----~~ 310 (741)
T 2ecf_A 253 YPAAGDANVQVKLGVISPAEQAQTQWIDLGKE----------------QDIYLARVNW-RDPQHLSFQRQSRD-----QK 310 (741)
T ss_dssp CCBTTSCCCEEEEEEECSSTTCCCEEECCCSC----------------SSEEEEEEEE-EETTEEEEEEEETT-----SS
T ss_pred cCCCCCCCCeeEEEEEECCCCCceEEecCCCC----------------cceEEEEEEe-CCCCEEEEEEeccc-----CC
Confidence 667777654 32111100000 0011222233 33333333322110 23
Q ss_pred CCceeEeecCCCceeEEEecCCc----ceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEE
Q 043350 352 PLSFSLWDARSKELLKVFNIEGH----IENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRV 427 (1133)
Q Consensus 352 d~~I~lWD~~tg~~l~~~~~h~~----~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v 427 (1133)
+..|.+||+.++++...+..+.. .+..++|+|++++ +++++.++.++.|.-.. .+.+.
T Consensus 311 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~---------~~~~~~~g~~~l~~~~~-------~~~~~-- 372 (741)
T 2ecf_A 311 KLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSI---------LWSSERTGFQHLYRIDS-------KGKAA-- 372 (741)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCE---------EEEECTTSSCEEEEECS-------SSCEE--
T ss_pred eEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeE---------EEEecCCCccEEEEEcC-------CCCee--
Confidence 56799999999998887766553 3468999999998 99999998765221110 00110
Q ss_pred EEecCCcccCCCCCEEEE-EECCCC-eE-EEEecCC--eEEEEeC--CCCeeEEEecCCcceeE--EecCCCEEEEEecC
Q 043350 428 ATRGAGAFVDDTKRTEAM-VLTADG-MI-WSGCTNG--LLVQWDG--NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVS 498 (1133)
Q Consensus 428 ~~~p~g~~~~h~~~V~sl-~~spdg-~L-~sgs~DG--~I~vWd~--~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~D 498 (1133)
.+..+...+..+ .|+|+| .| ++++.++ .+++|+. .+..+..+.. ...+.+ |+|||++|+....+
T Consensus 373 ------~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~ 445 (741)
T 2ecf_A 373 ------ALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSN 445 (741)
T ss_dssp ------ESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEE
T ss_pred ------eeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecC
Confidence 133445566666 489999 55 4555565 8999987 4665666655 444555 99999988877644
Q ss_pred ----CeEEEEeCCCCcceeee
Q 043350 499 ----GYLQILDLDGNLTASWI 515 (1133)
Q Consensus 499 ----G~I~vwd~~g~~l~~~~ 515 (1133)
+.+++|+..++.+..+.
T Consensus 446 ~~~p~~~~l~~~~~~~~~~l~ 466 (741)
T 2ecf_A 446 NSTPPQIELFRANGEKIATLV 466 (741)
T ss_dssp TTEEEEEEEEETTSCEEECSS
T ss_pred CCCCCeEEEEEcCCCeEEEec
Confidence 57899998776544443
No 139
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.76 E-value=1.4e-16 Score=194.51 Aligned_cols=319 Identities=10% Similarity=0.036 Sum_probs=206.6
Q ss_pred eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeC
Q 043350 164 CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKM 241 (1133)
Q Consensus 164 s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~ 241 (1133)
++++.+++ +.|++|.+||..+.... . ....+. .+.+++|+|++++|++++.|++|++||+
T Consensus 146 ~p~~~~~vs~~~d~~V~v~D~~t~~~~----------------~-~i~~g~-~~~~v~~spdg~~l~v~~~d~~V~v~D~ 207 (543)
T 1nir_A 146 DLPNLFSVTLRDAGQIALVDGDSKKIV----------------K-VIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDL 207 (543)
T ss_dssp CGGGEEEEEEGGGTEEEEEETTTCCEE----------------E-EEECST-TEEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred CCCCEEEEEEcCCCeEEEEECCCceEE----------------E-EEecCc-ccceEEECCCCCEEEEECCCCeEEEEEC
Confidence 56777777 77899999998763211 0 122122 2889999999999999999999999999
Q ss_pred --CCCCCCCCCCcccccccccCCCCeEEEEEee----CCc-EEEEe-CCCcEEEEeCCCCce--eeEeCCCCceEEEEee
Q 043350 242 --DQTLDDANNPFKEGLSWQAHRGPVLAMIFSS----QGD-LWSGG-EGGVIKIWPWESIEK--SLSLKPEEKHMAALLV 311 (1133)
Q Consensus 242 --~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp----~g~-L~Sgs-~DgtI~iWdl~~~~~--~l~~~~~~~~l~s~~~ 311 (1133)
.. .+.+..+. +...+.+++|+| +|+ |++++ .+++|.+||..+... .+.......
T Consensus 208 ~~~t--------~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~------- 271 (543)
T 1nir_A 208 WAKE--------PTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV------- 271 (543)
T ss_dssp TSSS--------CEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS-------
T ss_pred cCCC--------CcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCccc-------
Confidence 43 14444555 445679999999 999 88877 589999999876322 221110000
Q ss_pred cceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeE--EEecCCcceeEEEeCCCCCccc
Q 043350 312 ERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLK--VFNIEGHIENRVDTQSVQDQPV 389 (1133)
Q Consensus 312 d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~--~~~~h~~~v~~l~~sp~g~~~~ 389 (1133)
+...+... ..+..+...+. ...++++. ..++.|.+||+.+++.+. .+. +...+..+.|+|++++
T Consensus 272 ~~~~~~~~--~~v~~i~~s~~-~~~~~vs~--------~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~-- 337 (543)
T 1nir_A 272 DTQTYHPE--PRVAAIIASHE-HPEFIVNV--------KETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRY-- 337 (543)
T ss_dssp SSCCEESC--CCEEEEEECSS-SSEEEEEE--------TTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCE--
T ss_pred CccccccC--CceEEEEECCC-CCEEEEEE--------CCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCE--
Confidence 00000000 00011111011 12233333 678999999998876655 443 4566889999999997
Q ss_pred cccceEEEE-eeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCC-C-eEEEEe-cCCeEEEE
Q 043350 390 EDEMKVKFV-SSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTAD-G-MIWSGC-TNGLLVQW 465 (1133)
Q Consensus 390 e~e~~v~la-sgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spd-g-~L~sgs-~DG~I~vW 465 (1133)
++ ++..+++|..|+...... +..+. .+. ..|......+ ++|+ + .+++++ .|++|.+|
T Consensus 338 -------l~va~~~~~~v~v~D~~tg~l-------~~~i~---~g~-~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~ 398 (543)
T 1nir_A 338 -------FMTAANNSNKVAVIDSKDRRL-------SALVD---VGK-TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLI 398 (543)
T ss_dssp -------EEEEEGGGTEEEEEETTTTEE-------EEEEE---CSS-SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEE
T ss_pred -------EEEEecCCCeEEEEECCCCeE-------EEeec---cCC-CCCCCCCccc-CCCCCccEEEeccCCCceEEEE
Confidence 54 555678886554332211 11111 111 1243333333 4676 5 666665 68999999
Q ss_pred eC-C-------CCeeEEEecCCcceeE--EecCCCEEEEEe-------cCCeEEEEeCCC-Ccc-eee--------eccc
Q 043350 466 DG-N-------GNRVSDILHHQCAVQC--FCTYGSRMYVGY-------VSGYLQILDLDG-NLT-ASW--------IAHS 518 (1133)
Q Consensus 466 d~-~-------g~~l~~~~~h~~~V~~--fs~dg~~Lasgs-------~DG~I~vwd~~g-~~l-~~~--------~~H~ 518 (1133)
|. . .++++++..|...+.. ++|+|++|++++ .+++|.|||+.. +.. ..+ ..|.
T Consensus 399 d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~ 478 (543)
T 1nir_A 399 GTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA 478 (543)
T ss_dssp ECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSC
T ss_pred EeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCC
Confidence 99 4 5889999998776554 999999999998 378999999973 333 332 3567
Q ss_pred cCeEEeeec--ccceeee-----cccCCeeeccccCCC
Q 043350 519 SPVLKLAVG--VDHIYSL-----AAHGGIRGWTFTSPS 549 (1133)
Q Consensus 519 ~~V~~l~fs--~~~L~S~-----s~Dg~I~lW~l~s~~ 549 (1133)
..|..++|+ |+.|+.+ +.|+.|.+||..+..
T Consensus 479 ~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~ 516 (543)
T 1nir_A 479 KRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK 516 (543)
T ss_dssp CEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred CceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCce
Confidence 789999999 8887755 347999999977643
No 140
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.74 E-value=5.2e-17 Score=191.67 Aligned_cols=217 Identities=10% Similarity=-0.021 Sum_probs=159.3
Q ss_pred CCEEEEEeCC------CeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCC---cEEEEeCCCC
Q 043350 224 NRLVWTGHKD------GKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGG---VIKIWPWESI 293 (1133)
Q Consensus 224 ~~~LaSgs~D------g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~Dg---tI~iWdl~~~ 293 (1133)
+..|+.++.+ ++|++||+++ .....+.+|...|.+++|+|+|+ |++++.|+ .|++||+.+
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g---------~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t- 212 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG---------YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN- 212 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS---------CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC---------CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC-
Confidence 5666666654 7999999986 45667788999999999999999 99998875 777777642
Q ss_pred ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCC
Q 043350 294 EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEG 373 (1133)
Q Consensus 294 ~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~ 373 (1133)
++.. .+..+.
T Consensus 213 ---------------------------------------------------------------------g~~~-~l~~~~ 222 (415)
T 2hqs_A 213 ---------------------------------------------------------------------GAVR-QVASFP 222 (415)
T ss_dssp ---------------------------------------------------------------------CCEE-EEECCS
T ss_pred ---------------------------------------------------------------------CcEE-EeecCC
Confidence 3322 233455
Q ss_pred cceeEEEeCCCCCccccccceEEEE-eeCCCCc--cccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCC
Q 043350 374 HIENRVDTQSVQDQPVEDEMKVKFV-SSNKKEK--PHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTAD 450 (1133)
Q Consensus 374 ~~v~~l~~sp~g~~~~e~e~~v~la-sgs~Dg~--i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spd 450 (1133)
..+.+++|+|+++. |+ +++.++. |+.|+... .... .+..+...+.+++|+||
T Consensus 223 ~~~~~~~~spdg~~---------la~~~~~~g~~~i~~~d~~~--------~~~~--------~l~~~~~~~~~~~~spd 277 (415)
T 2hqs_A 223 RHNGAPAFSPDGSK---------LAFALSKTGSLNLYVMDLAS--------GQIR--------QVTDGRSNNTEPTWFPD 277 (415)
T ss_dssp SCEEEEEECTTSSE---------EEEEECTTSSCEEEEEETTT--------CCEE--------ECCCCSSCEEEEEECTT
T ss_pred CcccCEEEcCCCCE---------EEEEEecCCCceEEEEECCC--------CCEE--------eCcCCCCcccceEECCC
Confidence 56789999999997 66 6776665 33333221 1111 13456667889999999
Q ss_pred C-eEEEEec-CC--eEEEEeCCCCeeEEEecCCcceeE--EecCCCEEEEEecC---CeEEEEeCCCCcceeeeccccCe
Q 043350 451 G-MIWSGCT-NG--LLVQWDGNGNRVSDILHHQCAVQC--FCTYGSRMYVGYVS---GYLQILDLDGNLTASWIAHSSPV 521 (1133)
Q Consensus 451 g-~L~sgs~-DG--~I~vWd~~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~D---G~I~vwd~~g~~l~~~~~H~~~V 521 (1133)
| .|++++. +| .|.+||..+.....+..+...+.+ |+|+|++|++++.+ +.|++||+.+.....+..|. .+
T Consensus 278 g~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~ 356 (415)
T 2hqs_A 278 SQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LD 356 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SC
T ss_pred CCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-Cc
Confidence 9 7887776 45 677889866555566666666765 99999999988864 68999999865555666665 89
Q ss_pred EEeeec--ccceeeecccC---Ceeecccc
Q 043350 522 LKLAVG--VDHIYSLAAHG---GIRGWTFT 546 (1133)
Q Consensus 522 ~~l~fs--~~~L~S~s~Dg---~I~lW~l~ 546 (1133)
.+++|+ +++|++++.|+ .|.+|++.
T Consensus 357 ~~~~~spdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 357 ETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp EEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred CCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence 999999 88899888887 68999865
No 141
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.74 E-value=1e-16 Score=202.53 Aligned_cols=331 Identities=9% Similarity=0.003 Sum_probs=204.2
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecC---------Cc
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQE---------CG 176 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~D---------g~ 176 (1133)
+.|+|||+++++ +.||+|++|+..+ ++. ...+..|.... ..|.+++ +|||++|+ +.+ +.
T Consensus 22 ~~~spdg~~~~~-~~dg~i~~~d~~~---g~~-~~~~~~~~~~~----~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 22 AKWISDTEFIYR-EQKGTVRLWNVET---NTS-TVLIEGKKIES----LRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCBSSSSCBCCC-CSSSCEEEBCGGG---CCC-EEEECTTTTTT----TTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred cEEcCCCcEEEE-eCCCCEEEEECCC---CcE-EEEeccccccc----cccceEEECCCCCEEEEEecCccceeecceee
Confidence 778999998876 7899999999874 444 55666665410 0377888 99999888 333 77
Q ss_pred EEEeeCCCCCC-cCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccc
Q 043350 177 VRFWNLEDSYE-PGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEG 255 (1133)
Q Consensus 177 VrvWdl~~~~~-~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~ 255 (1133)
|.+||+.+... .+.. ...|...+.+++|+|||+.||.++. +.|++|++.++.. .
T Consensus 93 i~~~d~~~~~~~~l~~----------------~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~--------~ 147 (723)
T 1xfd_A 93 YVLSKIPHGDPQSLDP----------------PEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA--------I 147 (723)
T ss_dssp EEEEESSSCCCEECCC----------------TTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC--------E
T ss_pred EEEEECCCCceEeccC----------------CccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce--------E
Confidence 88999987422 1111 1123345778899999999999886 7999999986222 1
Q ss_pred cccccCCC------------------CeEEEEEeeCCc-EEEEeCC-CcEEEEeCCCCceeeEeCCCCceEEEEeecceE
Q 043350 256 LSWQAHRG------------------PVLAMIFSSQGD-LWSGGEG-GVIKIWPWESIEKSLSLKPEEKHMAALLVERSF 315 (1133)
Q Consensus 256 ~~l~gH~~------------------~V~sl~fsp~g~-L~Sgs~D-gtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~ 315 (1133)
.....+.. .+.+++|+|||+ |++++.| +.+++|++...... ..+. .. .
T Consensus 148 ~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~--~~~~-~~---------~ 215 (723)
T 1xfd_A 148 RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGS--IYPT-VK---------P 215 (723)
T ss_dssp EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSS--SSCC-CE---------E
T ss_pred EEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCc--CCCc-ce---------e
Confidence 22222222 237899999999 8888755 46778876431100 0000 00 0
Q ss_pred EEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecC------CcceeEEEeCCCCCccc
Q 043350 316 IDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIE------GHIENRVDTQSVQDQPV 389 (1133)
Q Consensus 316 ~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h------~~~v~~l~~sp~g~~~~ 389 (1133)
+.+. + ++.. ..+..|.+||+.+++....+..+ ...+..++|+|++++
T Consensus 216 ~~~~-----------~----------~G~~----~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~-- 268 (723)
T 1xfd_A 216 YHYP-----------K----------AGSE----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKV-- 268 (723)
T ss_dssp EECC-----------B----------TTSC----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEE--
T ss_pred ccCC-----------C----------CCCC----CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeE--
Confidence 0110 1 1110 12347889999988876666654 556889999999988
Q ss_pred cccceEEEEeeCCCC----ccccccccccceeeccCCceEEEEEecCCcccCCCCCE----EEEEECCCC-eEEE--Eec
Q 043350 390 EDEMKVKFVSSNKKE----KPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRT----EAMVLTADG-MIWS--GCT 458 (1133)
Q Consensus 390 e~e~~v~lasgs~Dg----~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V----~sl~~spdg-~L~s--gs~ 458 (1133)
+++.+..+ .|..++.. ......+... .+...+ ..++|+||| .|+. +..
T Consensus 269 -------l~~~~~~~~~~~~i~~~d~~--------~g~~~~~~~~------~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 327 (723)
T 1xfd_A 269 -------AVTWLNRAQNVSILTLCDAT--------TGVCTKKHED------ESEAWLHRQNEEPVFSKDGRKFFFIRAIP 327 (723)
T ss_dssp -------EEEEEETTSCEEEEEEEETT--------TCCEEEEEEE------ECSSCCCCCCCCCEECTTSCSEEEEEEEC
T ss_pred -------EEEEEcCCCCeEEEEEEeCC--------CCcceEEEEe------ccCCEEeccCCCceEcCCCCeEEEEEecc
Confidence 76554332 22222211 1111111111 111222 257899999 5554 456
Q ss_pred CC------eEEEEe-CCCCe---eEEEecCCccee---EEecCCCEEEEEecC---CeEEEEeCC--CC-cceeeec---
Q 043350 459 NG------LLVQWD-GNGNR---VSDILHHQCAVQ---CFCTYGSRMYVGYVS---GYLQILDLD--GN-LTASWIA--- 516 (1133)
Q Consensus 459 DG------~I~vWd-~~g~~---l~~~~~h~~~V~---~fs~dg~~Lasgs~D---G~I~vwd~~--g~-~l~~~~~--- 516 (1133)
++ .|.+|| ..+.. ...+..+...+. +|+|||++|+..+.+ +.++||++. +. ....+..
T Consensus 328 ~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 407 (723)
T 1xfd_A 328 QGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLV 407 (723)
T ss_dssp CSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSS
T ss_pred cCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceeccccc
Confidence 77 577788 44443 555554333333 499999999766654 789999975 32 2333443
Q ss_pred cccCeEEeeec--ccceee
Q 043350 517 HSSPVLKLAVG--VDHIYS 533 (1133)
Q Consensus 517 H~~~V~~l~fs--~~~L~S 533 (1133)
|...+..++|+ +++|+.
T Consensus 408 ~~~~~~~~~~spdg~~l~~ 426 (723)
T 1xfd_A 408 ENCTYFSASFSHSMDFFLL 426 (723)
T ss_dssp SSCCCCEEEECTTSSEEEE
T ss_pred CCCCeEEEEECCCCCEEEE
Confidence 67788899998 555554
No 142
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.71 E-value=1.3e-15 Score=193.20 Aligned_cols=345 Identities=9% Similarity=0.013 Sum_probs=203.0
Q ss_pred eEEEEE-eCCCCeEE--ec-CC-----cEEEeeCCCCCC--cCcCCCccccCCCCC---CCceeeccC---CCCeEEEEE
Q 043350 158 FLRNIA-CTDTQLWA--GQ-EC-----GVRFWNLEDSYE--PGAGIGGRVRRGDED---AAPFYESAN---TSPTMCLMV 220 (1133)
Q Consensus 158 ~V~~v~-s~dg~lla--s~-Dg-----~VrvWdl~~~~~--~~~gh~~~v~~g~~~---~~~~~~~~h---~s~V~~la~ 220 (1133)
.+.+++ ++||++|+ +. |+ .|++||+.+... ....+... +.|... ........+ ...|.+++|
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL-PGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------CCEESCCCEE
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc-cccccccchhhhhhhhhhhccccCcceeEE
Confidence 688889 99999988 55 77 899999987321 11111100 000000 000000000 123788999
Q ss_pred eCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCc-----
Q 043350 221 DCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIE----- 294 (1133)
Q Consensus 221 spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~----- 294 (1133)
+|||++|++++. +.|++||+.++.. .....+..|...+.+++|+|+|+ |++++ ++.|++||+.+..
T Consensus 117 SpDg~~l~~~~~-~~i~~~d~~~~~~------~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 117 SPDAQRLLFPLG-GELYLYDLKQEGK------AAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp CTTSSEEEEEET-TEEEEEESSSCST------TSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECC
T ss_pred CCCCCEEEEEeC-CcEEEEECCCCCc------ceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEec
Confidence 999999999987 9999999987210 04556778888999999999999 88887 5699999997631
Q ss_pred -----------------------eeeEeCCCCceEEEEeecce---EEEccCceeeeccccCCCCC-eEEEE-ecCCceE
Q 043350 295 -----------------------KSLSLKPEEKHMAALLVERS---FIDLRAQVTVNGACSISSTE-IKCML-SDHARAR 346 (1133)
Q Consensus 295 -----------------------~~l~~~~~~~~l~s~~~d~s---~~d~~~~~~v~~~~~~~~~~-~~~l~-S~d~~i~ 346 (1133)
..+.++|++..++....+.. .+... .. .+... ...+. ...+.
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~------~~--~p~~~~~~~~~~~~~g~-- 258 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRY------EV--YADRTDVIEQRYPAAGD-- 258 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEE------EE--CSSCEEEEEEECCBTTS--
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecC------CC--CCCcccceEeecCCCCC--
Confidence 22344445444444432221 00000 00 00000 00000 00000
Q ss_pred EEecCCCceeEeecCC-CceeEEEe--cCCcceeEEEeCCCCCccccccceEEEEeeCCC-----Cccccccccccceee
Q 043350 347 VWCAQPLSFSLWDARS-KELLKVFN--IEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKK-----EKPHGFLQRSRNAIM 418 (1133)
Q Consensus 347 vwss~d~~I~lWD~~t-g~~l~~~~--~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~D-----g~i~~~~~~~~~~~~ 418 (1133)
......|.+||+.+ ++...... .+...+..++| |+++. |+.++.+ ..|..++..
T Consensus 259 --~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~---------l~~~~~~~~~~~~~i~~~d~~------ 320 (741)
T 2ecf_A 259 --ANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQH---------LSFQRQSRDQKKLDLVEVTLA------ 320 (741)
T ss_dssp --CCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTE---------EEEEEEETTSSEEEEEEEETT------
T ss_pred --CCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCE---------EEEEEecccCCeEEEEEEECC------
Confidence 00112678889988 87665443 36677899999 99998 7765432 223222211
Q ss_pred ccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC--CCCeeEEEecCCcceeE---EecCCCEE
Q 043350 419 GAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG--NGNRVSDILHHQCAVQC---FCTYGSRM 492 (1133)
Q Consensus 419 ~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~--~g~~l~~~~~h~~~V~~---fs~dg~~L 492 (1133)
......+..... ...-..+..++|+||| .+++++.||.+++|.. ++. +..+..|...|.+ |+|+|++|
T Consensus 321 --~g~~~~~~~~~~---~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l 394 (741)
T 2ecf_A 321 --SNQQRVLAHETS---PTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLA 394 (741)
T ss_dssp --TCCEEEEEEEEC---SSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEE
T ss_pred --CCceEEEEEcCC---CCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEE
Confidence 111111111100 0111134567899999 8899999997777755 566 7777777776653 89999977
Q ss_pred EE-EecCC--eEEEEeCC--CCcceeeeccccCeEEeeec--ccceeeeccc----CCeeecccc
Q 043350 493 YV-GYVSG--YLQILDLD--GNLTASWIAHSSPVLKLAVG--VDHIYSLAAH----GGIRGWTFT 546 (1133)
Q Consensus 493 as-gs~DG--~I~vwd~~--g~~l~~~~~H~~~V~~l~fs--~~~L~S~s~D----g~I~lW~l~ 546 (1133)
+. ++.++ .++||++. +.....+.. ...+..++|+ +++|+....+ ..+.+|++.
T Consensus 395 ~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~ 458 (741)
T 2ecf_A 395 YFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRAN 458 (741)
T ss_dssp EEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred EEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence 54 44555 88999874 555555555 6678899998 6666654333 457777753
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.70 E-value=1.7e-15 Score=191.03 Aligned_cols=350 Identities=11% Similarity=0.034 Sum_probs=196.0
Q ss_pred CCEEEEecCCCeEEeccCCCCCCCCCCe-eeeccCCCc----------cccccceEEEEE-eCCCCeEEecCCcEEEeeC
Q 043350 115 VEFIGSGGGTGIFKVPSRAAVHPGRPPC-LELRPHPLK----------ETQAGRFLRNIA-CTDTQLWAGQECGVRFWNL 182 (1133)
Q Consensus 115 g~~lasgs~dg~irlW~~~~~~~g~~~~-~~l~~H~~~----------~~~~g~~V~~v~-s~dg~llas~Dg~VrvWdl 182 (1133)
|+.+++++.++ | +||..+ ++. + ..+..|... ....+..|.+++ ++|+.++++.++.|++||+
T Consensus 35 g~~~~~~~~~~-i-~~d~~t---g~~-~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~~~~~i~~~d~ 108 (706)
T 2z3z_A 35 GDNYVFIEGDD-L-VFNKAN---GKS-AQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLFTQGGLVGFDM 108 (706)
T ss_dssp TTEEEEEETTE-E-EEEC-----------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEEETTEEEEEET
T ss_pred CCeEEEEeCCc-E-EEECCC---CcE-eeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEEECCEEEEEEC
Confidence 56677777788 7 999874 433 1 233332210 000012588888 9994444488899999998
Q ss_pred CCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC-----CCCCCCCCcccccc
Q 043350 183 EDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQ-----TLDDANNPFKEGLS 257 (1133)
Q Consensus 183 ~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~-----~~~~~~~~~~~~~~ 257 (1133)
.+.... ....+...+.+++|+|||+.|+++ .|+.|++|++.+ +.. ...
T Consensus 109 ~~~~~~------------------~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~--------~~~ 161 (706)
T 2z3z_A 109 LARKVT------------------YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA--------IAV 161 (706)
T ss_dssp TTTEEE------------------EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC--------EES
T ss_pred CCCceE------------------EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc--------EEe
Confidence 763111 122344567788999999999995 679999999975 322 111
Q ss_pred cccCCC--------------CeEEEEEeeCCc-EEEEe---------------------------------CCCcEEEEe
Q 043350 258 WQAHRG--------------PVLAMIFSSQGD-LWSGG---------------------------------EGGVIKIWP 289 (1133)
Q Consensus 258 l~gH~~--------------~V~sl~fsp~g~-L~Sgs---------------------------------~DgtI~iWd 289 (1133)
...+.. .+.+++|+|+|+ |++++ .+..|.+||
T Consensus 162 ~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d 241 (706)
T 2z3z_A 162 TIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYH 241 (706)
T ss_dssp CSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEE
T ss_pred ccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEE
Confidence 222222 258999999999 88887 346688888
Q ss_pred CCCCcee-eEeC-CCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeE
Q 043350 290 WESIEKS-LSLK-PEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLK 367 (1133)
Q Consensus 290 l~~~~~~-l~~~-~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~ 367 (1133)
+.+.... +... ..... +..+...+++...++.+.+.. .....|.+||+.+++...
T Consensus 242 ~~~~~~~~~~~~~~~~~~------------------~~~~~~spdg~~l~~~~~~~~-----~~~~~v~~~d~~~g~~~~ 298 (706)
T 2z3z_A 242 LATGKTVYLQTGEPKEKF------------------LTNLSWSPDENILYVAEVNRA-----QNECKVNAYDAETGRFVR 298 (706)
T ss_dssp TTTTEEEECCCCSCTTCE------------------EEEEEECTTSSEEEEEEECTT-----SCEEEEEEEETTTCCEEE
T ss_pred CCCCceEeeccCCCCcee------------------EeeEEEECCCCEEEEEEeCCC-----CCeeEEEEEECCCCceee
Confidence 7653211 1100 01111 111112233333333222110 112378999999984444
Q ss_pred EEe-c-CCc---ceeEEEeCC--CCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCC
Q 043350 368 VFN-I-EGH---IENRVDTQS--VQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTK 440 (1133)
Q Consensus 368 ~~~-~-h~~---~v~~l~~sp--~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~ 440 (1133)
.+. . +.. .+..+.|+| ++++ +++++.++.++.|.-.. ....+. .+..+..
T Consensus 299 ~~~~~~~~~~~~~~~~~~~sp~~dg~~---------l~~~~~~g~~~l~~~~~------~~~~~~--------~l~~~~~ 355 (706)
T 2z3z_A 299 TLFVETDKHYVEPLHPLTFLPGSNNQF---------IWQSRRDGWNHLYLYDT------TGRLIR--------QVTKGEW 355 (706)
T ss_dssp EEEEEECSSCCCCCSCCEECTTCSSEE---------EEEECTTSSCEEEEEET------TSCEEE--------ECCCSSS
T ss_pred EEEEccCCCeECccCCceeecCCCCEE---------EEEEccCCccEEEEEEC------CCCEEE--------ecCCCCe
Confidence 332 2 222 246789999 9988 99998888765222110 000111 1233445
Q ss_pred CEEE-EEECCCC-eEEEE-ecCC----eEEEEeCCCCeeEEEecCCcceeE--EecCCCEEEEEecC----CeEEEEeCC
Q 043350 441 RTEA-MVLTADG-MIWSG-CTNG----LLVQWDGNGNRVSDILHHQCAVQC--FCTYGSRMYVGYVS----GYLQILDLD 507 (1133)
Q Consensus 441 ~V~s-l~~spdg-~L~sg-s~DG----~I~vWd~~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~D----G~I~vwd~~ 507 (1133)
.+.. ++|+|+| .|+.+ ..++ .|..|+..+..+..+. |...+.+ |+|||++|+.++.+ +.|++||+.
T Consensus 356 ~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 356 EVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp CEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred EEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence 5655 7899999 56544 4444 6777777554444444 4555665 99999988877544 569999998
Q ss_pred CCcceeeeccccCeEEeeec-ccceeeecccC--Ceeeccc
Q 043350 508 GNLTASWIAHSSPVLKLAVG-VDHIYSLAAHG--GIRGWTF 545 (1133)
Q Consensus 508 g~~l~~~~~H~~~V~~l~fs-~~~L~S~s~Dg--~I~lW~l 545 (1133)
+.. ..+..+..++..+.+. ...+..-+.|| .+..|-.
T Consensus 435 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 474 (706)
T 2z3z_A 435 KGS-HTLLEAKNPDTGYAMPEIRTGTIMAADGQTPLYYKLT 474 (706)
T ss_dssp SCE-EEEEECC------CCCCEEEEEEECTTSSSEEEEEEE
T ss_pred CCe-EeeccccchhhhcCCCCcEEEEEEcCCCCEEEEEEEE
Confidence 654 3444555556555555 22222234455 4555543
No 144
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.68 E-value=2.8e-15 Score=165.32 Aligned_cols=248 Identities=13% Similarity=0.055 Sum_probs=166.1
Q ss_pred EecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE-ecCCcEEEeeCCC-CCCcCcCCCccc
Q 043350 120 SGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA-GQECGVRFWNLED-SYEPGAGIGGRV 196 (1133)
Q Consensus 120 sgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla-s~Dg~VrvWdl~~-~~~~~~gh~~~v 196 (1133)
+++.|+.|++|+.. +.. ...+..|.. .+.+++ +++|++++ +.++.|++||+.+ .....
T Consensus 17 ~~~~~~~i~~~d~~----~~~-~~~~~~~~~-------~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~------- 77 (297)
T 2ojh_A 17 GGSMRSSIEIFNIR----TRK-MRVVWQTPE-------LFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEK------- 77 (297)
T ss_dssp -CCCCEEEEEEETT----TTE-EEEEEEESS-------CCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEE-------
T ss_pred CCCcceeEEEEeCC----CCc-eeeeccCCc-------ceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceE-------
Confidence 45788999999987 333 445666777 899999 99999999 7799999999876 32211
Q ss_pred cCCCCCCCceeeccC-CCCeEEEEEeCCCCEEEEEe--CCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeC
Q 043350 197 RRGDEDAAPFYESAN-TSPTMCLMVDCGNRLVWTGH--KDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQ 273 (1133)
Q Consensus 197 ~~g~~~~~~~~~~~h-~s~V~~la~spd~~~LaSgs--~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~ 273 (1133)
+...+ ...+.+++|+|++++|++++ .++.++||.++... .....+..+ ..+.+++|+|+
T Consensus 78 ----------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~-~~~~~~~~spd 139 (297)
T 2ojh_A 78 ----------VDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTG-------GTPRLMTKN-LPSYWHGWSPD 139 (297)
T ss_dssp ----------CCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTC-------CCCEECCSS-SSEEEEEECTT
T ss_pred ----------eccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCC-------CceEEeecC-CCccceEECCC
Confidence 11122 35688999999999999999 44566666654311 222333333 34899999999
Q ss_pred Cc-EE-EEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecC
Q 043350 274 GD-LW-SGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQ 351 (1133)
Q Consensus 274 g~-L~-Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~ 351 (1133)
|+ |+ +++.|+.++||+++.
T Consensus 140 g~~l~~~~~~~~~~~l~~~~~----------------------------------------------------------- 160 (297)
T 2ojh_A 140 GKSFTYCGIRDQVFDIYSMDI----------------------------------------------------------- 160 (297)
T ss_dssp SSEEEEEEEETTEEEEEEEET-----------------------------------------------------------
T ss_pred CCEEEEEECCCCceEEEEEEC-----------------------------------------------------------
Confidence 99 65 788899998887531
Q ss_pred CCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEec
Q 043350 352 PLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRG 431 (1133)
Q Consensus 352 d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p 431 (1133)
.+++ ...+..+...+.++.|+|+++
T Consensus 161 ---------~~~~-~~~~~~~~~~~~~~~~s~dg~--------------------------------------------- 185 (297)
T 2ojh_A 161 ---------DSGV-ETRLTHGEGRNDGPDYSPDGR--------------------------------------------- 185 (297)
T ss_dssp ---------TTCC-EEECCCSSSCEEEEEECTTSS---------------------------------------------
T ss_pred ---------CCCc-ceEcccCCCccccceECCCCC---------------------------------------------
Confidence 0000 011111222233344444443
Q ss_pred CCcccCCCCCEEEEEECCCCeEEEEe-cCCeEEEEeC--CCCeeEEEecCCcceeE--EecCCCEEEEEecC--------
Q 043350 432 AGAFVDDTKRTEAMVLTADGMIWSGC-TNGLLVQWDG--NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVS-------- 498 (1133)
Q Consensus 432 ~g~~~~h~~~V~sl~~spdg~L~sgs-~DG~I~vWd~--~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~D-------- 498 (1133)
.|+.++ .++.+++|++ .+..+..+..|...+.+ |+|+|++|++++.+
T Consensus 186 --------------------~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 245 (297)
T 2ojh_A 186 --------------------WIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPR 245 (297)
T ss_dssp --------------------EEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCS
T ss_pred --------------------EEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccc
Confidence 333333 4666777765 45666677777777766 89999999888866
Q ss_pred ---CeEEEEeCCCC-c--ceeeeccccCeEEeeec--ccceeeecccC
Q 043350 499 ---GYLQILDLDGN-L--TASWIAHSSPVLKLAVG--VDHIYSLAAHG 538 (1133)
Q Consensus 499 ---G~I~vwd~~g~-~--l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg 538 (1133)
+.|++||+.+. . +..+.+|...|..++|+ +++|++++.|.
T Consensus 246 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 246 DLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 57999999853 2 34455888999999999 78888887664
No 145
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.65 E-value=4e-14 Score=160.30 Aligned_cols=145 Identities=10% Similarity=-0.048 Sum_probs=98.8
Q ss_pred cCCCCC-EEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--e-cCCcEEEeeCCCC
Q 043350 111 FQPMVE-FIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--G-QECGVRFWNLEDS 185 (1133)
Q Consensus 111 ~~p~g~-~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s-~Dg~VrvWdl~~~ 185 (1133)
|.+++. .+++++.++.|++||..+ ++. ...+..+.. .. .++ +++|++++ + .++.|.+||+.+.
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~---~~~-~~~~~~~~~-------~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~ 72 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDT---LEI-LNQITLGYD-------FV-DTAITSDCSNVVVTSDFCQTLVQIETQLE 72 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTT---CCE-EEEEECCCC-------EE-EEEECSSSCEEEEEESTTCEEEEEECSSS
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcc---cce-eeeEEccCC-------cc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC
Confidence 455444 478889999999999874 444 555554433 55 788 99998554 3 3789999998764
Q ss_pred CCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCC---eEEEEeCCCCCCCCCCCcccccccccCC
Q 043350 186 YEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDG---KIRSWKMDQTLDDANNPFKEGLSWQAHR 262 (1133)
Q Consensus 186 ~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg---~V~vWd~~~~~~~~~~~~~~~~~l~gH~ 262 (1133)
... ......+..+..+++|+|++++|+++..++ .|.+||+..+ +.+..+. +.
T Consensus 73 ~~~----------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~--------~~~~~~~-~~ 127 (331)
T 3u4y_A 73 PPK----------------VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN--------KFISTIP-IP 127 (331)
T ss_dssp SCE----------------EEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT--------EEEEEEE-CC
T ss_pred cee----------------EEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC--------CeEEEEE-CC
Confidence 210 112334455666699999999999655553 8999999861 2223333 34
Q ss_pred CCeEEEEEeeCCc-EE-EEeCCCc-EEEEeCCC
Q 043350 263 GPVLAMIFSSQGD-LW-SGGEGGV-IKIWPWES 292 (1133)
Q Consensus 263 ~~V~sl~fsp~g~-L~-Sgs~Dgt-I~iWdl~~ 292 (1133)
....+++|+|+|+ |+ ++..++. |.+|+++.
T Consensus 128 ~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 128 YDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp TTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 4568999999998 54 4456688 99999875
No 146
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.63 E-value=1.4e-13 Score=156.83 Aligned_cols=277 Identities=9% Similarity=0.064 Sum_probs=179.9
Q ss_pred CCeEEEEEeCCCCEEEEEeC-------CCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCC
Q 043350 213 SPTMCLMVDCGNRLVWTGHK-------DGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGG 283 (1133)
Q Consensus 213 s~V~~la~spd~~~LaSgs~-------Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~Dg 283 (1133)
..+..++|+|+++.|++++. ++.|.+||...+ +....+. +...+.+++|+|+|+ ++++..++
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~--------~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~ 111 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL--------EVTQAIH-NDLKPFGATINNTTQTLWFGNTVNS 111 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC--------CEEEEEE-ESSCCCSEEEETTTTEEEEEETTTT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC--------eEEEEEe-cCCCcceEEECCCCCEEEEEecCCC
Confidence 35789999999999888874 568999998761 2222333 234578899999998 45556689
Q ss_pred cEEEEeCCCCcee--eEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecC
Q 043350 284 VIKIWPWESIEKS--LSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDAR 361 (1133)
Q Consensus 284 tI~iWdl~~~~~~--l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~ 361 (1133)
.|.+||..+.... +........ ..........+...+++...++... ..++.|.+||+.
T Consensus 112 ~v~~~d~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~s~dg~~l~~~~~--------~~~~~i~~~d~~ 172 (353)
T 3vgz_A 112 AVTAIDAKTGEVKGRLVLDDRKRT-----------EEVRPLQPRELVADDATNTVYISGI--------GKESVIWVVDGG 172 (353)
T ss_dssp EEEEEETTTCCEEEEEESCCCCCC-----------SSCCCCEEEEEEEETTTTEEEEEEE--------SSSCEEEEEETT
T ss_pred EEEEEeCCCCeeEEEEecCCCccc-----------cccCCCCCceEEECCCCCEEEEEec--------CCCceEEEEcCC
Confidence 9999999764321 211110000 0000000001111122222222222 347889999999
Q ss_pred CCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCC
Q 043350 362 SKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKR 441 (1133)
Q Consensus 362 tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~ 441 (1133)
+++.+..+..+...+..++++|+++. +++++.++.+..++...... +..+... ..++...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~s~dg~~---------l~~~~~~~~i~~~d~~~~~~-------~~~~~~~----~~~~~~~ 232 (353)
T 3vgz_A 173 NIKLKTAIQNTGKMSTGLALDSEGKR---------LYTTNADGELITIDTADNKI-------LSRKKLL----DDGKEHF 232 (353)
T ss_dssp TTEEEEEECCCCTTCCCCEEETTTTE---------EEEECTTSEEEEEETTTTEE-------EEEEECC----CSSSCCC
T ss_pred CCceEEEecCCCCccceEEECCCCCE---------EEEEcCCCeEEEEECCCCeE-------EEEEEcC----CCCCCcc
Confidence 99999988866666889999999998 88888888876444322111 1112111 1234556
Q ss_pred EEEEEECCCC-eEEEEec-CCeEEEEeC-CCCeeEEEecCCcceeEEecCCCEEEEEe-cCCeEEEEeCC-CCcceeeec
Q 043350 442 TEAMVLTADG-MIWSGCT-NGLLVQWDG-NGNRVSDILHHQCAVQCFCTYGSRMYVGY-VSGYLQILDLD-GNLTASWIA 516 (1133)
Q Consensus 442 V~sl~~spdg-~L~sgs~-DG~I~vWd~-~g~~l~~~~~h~~~V~~fs~dg~~Lasgs-~DG~I~vwd~~-g~~l~~~~~ 516 (1133)
+..++++|+| .+++++. ++.|.+||. +++.+..+..+...-.+|+|+|++|++++ .++.|.+||.. ++.+..+..
T Consensus 233 ~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~ 312 (353)
T 3vgz_A 233 FINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT 312 (353)
T ss_dssp EEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec
Confidence 7889999999 6666654 599999999 66777777765443344999999776666 69999999997 455555544
Q ss_pred cccCeEEeeec--ccceeeecccC
Q 043350 517 HSSPVLKLAVG--VDHIYSLAAHG 538 (1133)
Q Consensus 517 H~~~V~~l~fs--~~~L~S~s~Dg 538 (1133)
+ ..+.+++|+ +++|+.+..++
T Consensus 313 ~-~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 313 P-THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp C-SEEEEEEECTTSCEEEEEEECC
T ss_pred C-CCCCeEEEcCCCCEEEEEEccc
Confidence 3 467889998 77676666554
No 147
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.62 E-value=6.1e-14 Score=158.82 Aligned_cols=276 Identities=10% Similarity=0.104 Sum_probs=164.2
Q ss_pred ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCC-CeEEEEeCCCCCCCCCC
Q 043350 172 GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKD-GKIRSWKMDQTLDDANN 250 (1133)
Q Consensus 172 s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~D-g~V~vWd~~~~~~~~~~ 250 (1133)
+.|+.|++|++..... +. ......+...+.+++|+|++++|++++.+ +.|++|+++... .
T Consensus 12 ~~~~~v~~~~~~~~~~-~~--------------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~----~ 72 (343)
T 1ri6_A 12 PESQQIHVWNLNHEGA-LT--------------LTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD----G 72 (343)
T ss_dssp GGGTEEEEEEECTTSC-EE--------------EEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT----C
T ss_pred CCCCeEEEEEECCCCc-EE--------------EeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCC----C
Confidence 5689999999864110 00 11122355678899999999999888887 999999997311 1
Q ss_pred CcccccccccCCCCeEEEEEeeCCc-EEEEe-CCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccc
Q 043350 251 PFKEGLSWQAHRGPVLAMIFSSQGD-LWSGG-EGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGAC 328 (1133)
Q Consensus 251 ~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs-~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~ 328 (1133)
....+..+..+. .+.+++|+|+|+ |++++ .++.|.+||+...... .. ...+.....+..+.
T Consensus 73 ~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~-------~~---------~~~~~~~~~~~~~~ 135 (343)
T 1ri6_A 73 ALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV-------GV---------VDVVEGLDGCHSAN 135 (343)
T ss_dssp CEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE-------EE---------EEEECCCTTBCCCE
T ss_pred ceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccc-------cc---------cccccCCCCceEEE
Confidence 113333444444 789999999999 76665 4889999998421000 00 00000000111122
Q ss_pred cCCCCCeEEEEecCCceEEEecCCCceeEeecCC-CceeE----EEec-CCcceeEEEeCCCCCccccccceEEE-EeeC
Q 043350 329 SISSTEIKCMLSDHARARVWCAQPLSFSLWDARS-KELLK----VFNI-EGHIENRVDTQSVQDQPVEDEMKVKF-VSSN 401 (1133)
Q Consensus 329 ~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~t-g~~l~----~~~~-h~~~v~~l~~sp~g~~~~e~e~~v~l-asgs 401 (1133)
..+++...++ ++ ..++.|.+||+.+ ++... .+.. ....+..++|+|++++ + +++.
T Consensus 136 ~s~dg~~l~~-~~--------~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~---------l~~~~~ 197 (343)
T 1ri6_A 136 ISPDNRTLWV-PA--------LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY---------AYCVNE 197 (343)
T ss_dssp ECTTSSEEEE-EE--------GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE---------EEEEET
T ss_pred ECCCCCEEEE-ec--------CCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCE---------EEEEeC
Confidence 2233332222 22 3678899999987 65433 2333 3346778999999986 5 4555
Q ss_pred CCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEE-EEecCCeEEEEeCC--C---CeeEE
Q 043350 402 KKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIW-SGCTNGLLVQWDGN--G---NRVSD 474 (1133)
Q Consensus 402 ~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~-sgs~DG~I~vWd~~--g---~~l~~ 474 (1133)
.++.+..|+..... +.......+...+.+ ......+..++|+|+| .|+ ++..++.|.+|++. + +.+..
T Consensus 198 ~~~~i~~~~~~~~~---g~~~~~~~~~~~~~~--~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~ 272 (343)
T 1ri6_A 198 LNSSVDVWELKDPH---GNIECVQTLDMMPEN--FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF 272 (343)
T ss_dssp TTTEEEEEESSCTT---SCCEEEEEEECSCTT--CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE
T ss_pred CCCEEEEEEecCCC---CcEEEEeeccccCcc--ccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeee
Confidence 77877644322100 000001111111111 1123457789999999 666 55579999999995 3 33444
Q ss_pred EecCCcceeE--EecCCCEEEEEe-cCCeEEEEeCC
Q 043350 475 ILHHQCAVQC--FCTYGSRMYVGY-VSGYLQILDLD 507 (1133)
Q Consensus 475 ~~~h~~~V~~--fs~dg~~Lasgs-~DG~I~vwd~~ 507 (1133)
+..+.. +.+ |+|+|++|++++ .++.|.+|+++
T Consensus 273 ~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 273 QPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred ecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 544444 443 999999998888 68999999664
No 148
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.62 E-value=1.6e-14 Score=182.52 Aligned_cols=302 Identities=11% Similarity=0.018 Sum_probs=179.9
Q ss_pred EEEEE-eCCCCeEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCC---CeEEEEEeCCCCEEEEEeCC
Q 043350 159 LRNIA-CTDTQLWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTS---PTMCLMVDCGNRLVWTGHKD 233 (1133)
Q Consensus 159 V~~v~-s~dg~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s---~V~~la~spd~~~LaSgs~D 233 (1133)
..+++ ++||++++ +.|++|++||+.+.... .....|.. .|.+++|+|||++|++++.+
T Consensus 19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~-----------------~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~ 81 (723)
T 1xfd_A 19 DPEAKWISDTEFIYREQKGTVRLWNVETNTST-----------------VLIEGKKIESLRAIRYEISPDREYALFSYNV 81 (723)
T ss_dssp CCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCE-----------------EEECTTTTTTTTCSEEEECTTSSEEEEEESC
T ss_pred ccccEEcCCCcEEEEeCCCCEEEEECCCCcEE-----------------EEeccccccccccceEEECCCCCEEEEEecC
Confidence 45567 89999888 88999999998764221 11222322 48999999999999999875
Q ss_pred ---------CeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCcee-eEeCCC
Q 043350 234 ---------GKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKS-LSLKPE 302 (1133)
Q Consensus 234 ---------g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~-l~~~~~ 302 (1133)
+.|.+||+.++.. ..+....+|...|.+++|+|+|+ |++++. +.|++|++.+.... +.....
T Consensus 82 ~~~~~~~~~~~i~~~d~~~~~~------~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~ 154 (723)
T 1xfd_A 82 EPIYQHSYTGYYVLSKIPHGDP------QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGK 154 (723)
T ss_dssp CCCSSSCCCSEEEEEESSSCCC------EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCB
T ss_pred ccceeecceeeEEEEECCCCce------EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCC
Confidence 7888999987322 33444456667799999999999 888886 78999998652111 100000
Q ss_pred CceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeC
Q 043350 303 EKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQ 382 (1133)
Q Consensus 303 ~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~s 382 (1133)
.. ..+ .+ .. -|-.. +.-...+.+++||
T Consensus 155 ~~------------------------------~~~--~g--------~~-----~~v~~--------ee~~~~~~~~~~S 181 (723)
T 1xfd_A 155 EG------------------------------VIY--NG--------LS-----DWLYE--------EEILKTHIAHWWS 181 (723)
T ss_dssp TT------------------------------TEE--EE--------EC-----CHHHH--------HTTSSSSEEEEEC
T ss_pred CC------------------------------ceE--Cc--------cc-----ceeEE--------EEeccCcceEEEC
Confidence 00 000 00 00 00000 0001234688999
Q ss_pred CCCCccccccceEEEEeeCCCCc-cccccccccceeeccCCceEEEEEecCC----------------c----ccC----
Q 043350 383 SVQDQPVEDEMKVKFVSSNKKEK-PHGFLQRSRNAIMGAADAVRRVATRGAG----------------A----FVD---- 437 (1133)
Q Consensus 383 p~g~~~~e~e~~v~lasgs~Dg~-i~~~~~~~~~~~~~~~~~V~~v~~~p~g----------------~----~~~---- 437 (1133)
|+++. |+.++.++. +..+...... ......+..+.+.++| . +..
T Consensus 182 pDg~~---------la~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~ 250 (723)
T 1xfd_A 182 PDGTR---------LAYAAINDSRVPIMELPTYT--GSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDP 250 (723)
T ss_dssp TTSSE---------EEEEEEECTTSCEEEECCCS--SSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCG
T ss_pred CCCCE---------EEEEEECCCccceEEeeccC--CcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccC
Confidence 99998 887776542 2211100000 0000001111111111 0 111
Q ss_pred --CCCCEEEEEECCCC-eEEEEec----CCeEEEEeC-CCCeeEEEec-CCcce------eEEecCCCEEEEE--ecCC-
Q 043350 438 --DTKRTEAMVLTADG-MIWSGCT----NGLLVQWDG-NGNRVSDILH-HQCAV------QCFCTYGSRMYVG--YVSG- 499 (1133)
Q Consensus 438 --h~~~V~sl~~spdg-~L~sgs~----DG~I~vWd~-~g~~l~~~~~-h~~~V------~~fs~dg~~Lasg--s~DG- 499 (1133)
+...+..++|+||| .|++... +..|.+||. .+++...+.. +...+ ..|+|||++|+.. ..++
T Consensus 251 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 330 (723)
T 1xfd_A 251 RMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGG 330 (723)
T ss_dssp GGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSS
T ss_pred CCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCC
Confidence 25568899999999 7766543 357999999 4565554433 33333 2399999977754 4666
Q ss_pred -----eEEEEe-CCCCc---ceeeeccccCeEE-eeec--ccceeeeccc---CCeeeccccCC
Q 043350 500 -----YLQILD-LDGNL---TASWIAHSSPVLK-LAVG--VDHIYSLAAH---GGIRGWTFTSP 548 (1133)
Q Consensus 500 -----~I~vwd-~~g~~---l~~~~~H~~~V~~-l~fs--~~~L~S~s~D---g~I~lW~l~s~ 548 (1133)
.|++|| ..+.. ...+..+...+.. ++|+ ++.|+..+.+ +.+++|++...
T Consensus 331 ~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 331 RGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp SSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred CcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 677888 45544 5556554455554 6888 7788765554 78999998754
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.62 E-value=8.8e-15 Score=180.20 Aligned_cols=264 Identities=10% Similarity=0.018 Sum_probs=177.8
Q ss_pred CCCeEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCCCCCCCCcccccccccCC-CCeEEEEEeeCCc-EEEEeC---CCcE
Q 043350 212 TSPTMCLMVDCGNRLVWTGHK-DGKIRSWKMDQTLDDANNPFKEGLSWQAHR-GPVLAMIFSSQGD-LWSGGE---GGVI 285 (1133)
Q Consensus 212 ~s~V~~la~spd~~~LaSgs~-Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~-~~V~sl~fsp~g~-L~Sgs~---DgtI 285 (1133)
..+|++++|+|||+.||+++. ||+++||++++ .....+..|. ..|.+++|+|+ + +++++. +...
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~---------g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~ 90 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDG---------GETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQH 90 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEET---------TEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcC---------CCcEeeecccccccccccCCCC-eEEEEeccCCCCcce
Confidence 458999999999999999887 99999999865 3344555565 68999999999 8 777775 5556
Q ss_pred EEEeCCC--CceeeEeCC-CCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCC
Q 043350 286 KIWPWES--IEKSLSLKP-EEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARS 362 (1133)
Q Consensus 286 ~iWdl~~--~~~~l~~~~-~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~t 362 (1133)
++|.++. ......+.. .+.. ...+. ++++..++++. . ++.+.+||+.+
T Consensus 91 ~l~~~~~~~~g~~~~l~~~~~~~---------~~~~s-----------~dg~~~~~~s~--------~-~~~~~l~d~~~ 141 (582)
T 3o4h_A 91 ALFKVNTSRPGEEQRLEAVKPMR---------ILSGV-----------DTGEAVVFTGA--------T-EDRVALYALDG 141 (582)
T ss_dssp EEEEEETTSTTCCEECTTSCSBE---------EEEEE-----------ECSSCEEEEEE--------C-SSCEEEEEEET
T ss_pred EEEEEeccCCCccccccCCCCce---------eeeeC-----------CCCCeEEEEec--------C-CCCceEEEccC
Confidence 6665432 111111111 1111 11111 34444444444 3 34445999998
Q ss_pred CceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCC----CccccccccccceeeccCCceEEEEEecCCcccCC
Q 043350 363 KELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKK----EKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDD 438 (1133)
Q Consensus 363 g~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~D----g~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h 438 (1133)
+++......+. .+++|||+|+. +++++.+ ..|+.++.. .+... .+..+
T Consensus 142 g~~~~l~~~~~---~~~~~spDG~~---------la~~~~~~~~~~~i~~~d~~--------~g~~~--------~l~~~ 193 (582)
T 3o4h_A 142 GGLRELARLPG---FGFVSDIRGDL---------IAGLGFFGGGRVSLFTSNLS--------SGGLR--------VFDSG 193 (582)
T ss_dssp TEEEEEEEESS---CEEEEEEETTE---------EEEEEEEETTEEEEEEEETT--------TCCCE--------EECCS
T ss_pred CcEEEeecCCC---ceEEECCCCCE---------EEEEEEcCCCCeEEEEEcCC--------CCCce--------EeecC
Confidence 88766555444 78999999999 8877766 334322211 11111 13355
Q ss_pred CCCEEEEEECCCC-eEEEEecCC--eEEEEeCCCCeeEEEecCCccee--E--------EecCCCEEEEEecCCeEEEEe
Q 043350 439 TKRTEAMVLTADG-MIWSGCTNG--LLVQWDGNGNRVSDILHHQCAVQ--C--------FCTYGSRMYVGYVSGYLQILD 505 (1133)
Q Consensus 439 ~~~V~sl~~spdg-~L~sgs~DG--~I~vWd~~g~~l~~~~~h~~~V~--~--------fs~dg~~Lasgs~DG~I~vwd 505 (1133)
...+..++|+||| .|+++..+| .|++||.++.....+..|...+. . |+|||.++++++.||++++|+
T Consensus 194 ~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 194 EGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI 273 (582)
T ss_dssp SCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred CCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEE
Confidence 6667888999999 888888888 89999995533335555654433 2 899999999999999999999
Q ss_pred CCCCcceeeeccccCeEEeeec-ccceeeecccCC---eeecccc
Q 043350 506 LDGNLTASWIAHSSPVLKLAVG-VDHIYSLAAHGG---IRGWTFT 546 (1133)
Q Consensus 506 ~~g~~l~~~~~H~~~V~~l~fs-~~~L~S~s~Dg~---I~lW~l~ 546 (1133)
+ |+.+. .+.+.|.+++|+ ++.+++++.+.+ |.+|++.
T Consensus 274 ~-g~~~~---~~~~~v~~~~~sdg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 274 D-GERVE---APQGNHGRVVLWRGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp T-TEEEC---CCSSEEEEEEEETTEEEEEEEETTEEEEEEEETTC
T ss_pred E-CCeec---cCCCceEEEEecCCEEEEEEcCCCCCCeEEEEcCC
Confidence 9 76544 344678888888 778888887754 6666643
No 150
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.61 E-value=9.2e-14 Score=156.92 Aligned_cols=279 Identities=7% Similarity=-0.029 Sum_probs=164.9
Q ss_pred CEEEEecCCCeEEeccCCCCCCCCCCeeeecc-CCCccccccceEEEEE-eCCCCeE-E--ecCCcEEEeeCCCCCCcCc
Q 043350 116 EFIGSGGGTGIFKVPSRAAVHPGRPPCLELRP-HPLKETQAGRFLRNIA-CTDTQLW-A--GQECGVRFWNLEDSYEPGA 190 (1133)
Q Consensus 116 ~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~-H~~~~~~~g~~V~~v~-s~dg~ll-a--s~Dg~VrvWdl~~~~~~~~ 190 (1133)
++|++++.++.|++||..+ ++. +..+.. +.. ..+..++ +++|+.+ + +.++.|.+||+.+.....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~---~~~-~~~~~~~~~~------~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~- 70 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEK---MAV-DKVITIADAG------PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG- 70 (337)
T ss_dssp EEEEEEETTTEEEEEETTT---TEE-EEEEECTTCT------TCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE-
T ss_pred cEEEEcCCCCeEEEEECCC---CcE-EEEEEcCCCC------CCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEe-
Confidence 4789999999999999873 333 444432 211 0145567 8888654 4 457899999987632110
Q ss_pred CCCccccCCCCCCCceeecc----CCCCeEEEEEeCCCCEEEEEe------------CCCeEEEEeCCCCCCCCCCCccc
Q 043350 191 GIGGRVRRGDEDAAPFYESA----NTSPTMCLMVDCGNRLVWTGH------------KDGKIRSWKMDQTLDDANNPFKE 254 (1133)
Q Consensus 191 gh~~~v~~g~~~~~~~~~~~----h~s~V~~la~spd~~~LaSgs------------~Dg~V~vWd~~~~~~~~~~~~~~ 254 (1133)
. +... |...+.+++|+|+++.|++++ .++.|.+||+..+ +.
T Consensus 71 --------------~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~--------~~ 127 (337)
T 1pby_B 71 --------------R-IDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL--------SR 127 (337)
T ss_dssp --------------E-EECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT--------EE
T ss_pred --------------e-EEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC--------cE
Confidence 0 0001 112456899999999998886 5799999999761 22
Q ss_pred ccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCC
Q 043350 255 GLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISST 333 (1133)
Q Consensus 255 ~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~ 333 (1133)
...+.. ...+.+++|+|+|+ |+++ ++.|.+||+.+......+.....
T Consensus 128 ~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~----------------------------- 175 (337)
T 1pby_B 128 RKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW----------------------------- 175 (337)
T ss_dssp EEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-----------------------------
T ss_pred EEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-----------------------------
Confidence 223332 45678899999999 8777 68899999865321111100000
Q ss_pred CeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCC-Cccc-----
Q 043350 334 EIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKK-EKPH----- 407 (1133)
Q Consensus 334 ~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~D-g~i~----- 407 (1133)
.. .+.++|++.. ++..+.. +.+.
T Consensus 176 ---------------------------------------~~---~~~~s~dg~~---------l~~~~~~~~~~~~~~~~ 204 (337)
T 1pby_B 176 ---------------------------------------EA---ETYAQPDVLA---------VWNQHESSGVMATPFYT 204 (337)
T ss_dssp ---------------------------------------TT---TTBCCCBCCC---------CCCCCTTTTEEEEEEEE
T ss_pred ---------------------------------------CC---CceeCCCccE---------EeeeccCCCceeeeeec
Confidence 00 0022333222 1111111 0000
Q ss_pred --------ccc--ccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-CCCeeEEE
Q 043350 408 --------GFL--QRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-NGNRVSDI 475 (1133)
Q Consensus 408 --------~~~--~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~ 475 (1133)
.+. ...+..+......+..+.+ ..+...+.+++++|+| +++++ ++.|.+||. +++.+..+
T Consensus 205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~------~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~ 276 (337)
T 1pby_B 205 ARKDIDPADPTAYRTGLLTMDLETGEMAMREV------RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV 276 (337)
T ss_dssp EBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE------EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE
T ss_pred cccccccccccccccceEEEeCCCCCceEeec------CCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCccee
Confidence 000 0000111111122222222 2344567889999999 77777 799999999 45666666
Q ss_pred ecCCcceeE-EecCCCEEEEEecCCeEEEEeCC-CCcceeeecccc
Q 043350 476 LHHQCAVQC-FCTYGSRMYVGYVSGYLQILDLD-GNLTASWIAHSS 519 (1133)
Q Consensus 476 ~~h~~~V~~-fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~H~~ 519 (1133)
..+...... |+|+|++|++++.++.|++||+. ++.+..+..+..
T Consensus 277 ~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 277 PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp ECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred cCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCCC
Confidence 654333222 99999999999999999999997 466666665543
No 151
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.61 E-value=4.5e-14 Score=177.89 Aligned_cols=293 Identities=11% Similarity=0.106 Sum_probs=181.9
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCC
Q 043350 213 SPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWE 291 (1133)
Q Consensus 213 s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~ 291 (1133)
.+|.+++|+|+ +.++.+ .|++|++||+.+ .....+..|...+.+++|+|+|+ |+++ .|+.|++|++.
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~---------~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~ 149 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLA---------RKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGG 149 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTT---------TEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECB
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCC---------CceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecC
Confidence 57999999999 655555 359999999987 44445566778899999999999 7774 68999999987
Q ss_pred C-----Cc--------------------------eeeEeCCCCceEEEEeecce---EEEccCceeeeccccCCCCCeEE
Q 043350 292 S-----IE--------------------------KSLSLKPEEKHMAALLVERS---FIDLRAQVTVNGACSISSTEIKC 337 (1133)
Q Consensus 292 ~-----~~--------------------------~~l~~~~~~~~l~s~~~d~s---~~d~~~~~~v~~~~~~~~~~~~~ 337 (1133)
+ .. ..+.++|++..++....+.. .+.+. .... ..+....
T Consensus 150 ~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~------~~~~-~~~~~~~ 222 (706)
T 2z3z_A 150 KLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIV------DYHP-LEAESKP 222 (706)
T ss_dssp CTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEE------ECCS-SSCEEEE
T ss_pred cccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEee------ccCC-CCCceEE
Confidence 5 31 22334444444444432211 00000 0000 0000000
Q ss_pred EE-ecCCceEEEecCCCceeEeecCCCceeEEEe--cCCcceeEEEeCCCCCccccccceEEEEeeCCCC-----ccccc
Q 043350 338 ML-SDHARARVWCAQPLSFSLWDARSKELLKVFN--IEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKE-----KPHGF 409 (1133)
Q Consensus 338 l~-S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~--~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg-----~i~~~ 409 (1133)
.. ...+. ...+..|.+||+.+++...... .+...+..++|+|+++. |++++.++ .+..+
T Consensus 223 ~~y~~~g~----~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~---------l~~~~~~~~~~~~~v~~~ 289 (706)
T 2z3z_A 223 LYYPMAGT----PSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENI---------LYVAEVNRAQNECKVNAY 289 (706)
T ss_dssp ECCCBTTS----CCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSE---------EEEEEECTTSCEEEEEEE
T ss_pred eeCCCCCC----CCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCE---------EEEEEeCCCCCeeEEEEE
Confidence 00 00000 0134678999999888655443 35567899999999998 88776554 33333
Q ss_pred cccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECC--CC-eEEEEecCCeEEEEeC--CCCeeEEEecCCccee-
Q 043350 410 LQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTA--DG-MIWSGCTNGLLVQWDG--NGNRVSDILHHQCAVQ- 483 (1133)
Q Consensus 410 ~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~sp--dg-~L~sgs~DG~I~vWd~--~g~~l~~~~~h~~~V~- 483 (1133)
+..... .+..+..... ......+..+.|+| || ++++++.||.+++|.. ++..+..+..|...+.
T Consensus 290 d~~~g~-------~~~~~~~~~~---~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~ 359 (706)
T 2z3z_A 290 DAETGR-------FVRTLFVETD---KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTN 359 (706)
T ss_dssp ETTTCC-------EEEEEEEEEC---SSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEE
T ss_pred ECCCCc-------eeeEEEEccC---CCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEe
Confidence 221110 1111111100 01111235678999 99 8899999999999976 5677888887777675
Q ss_pred --EEecCCCEEEEEec-CC----eEEEEeCCCCcceeeeccccCeEEeeec--ccceeeeccc----CCeeeccccCC
Q 043350 484 --CFCTYGSRMYVGYV-SG----YLQILDLDGNLTASWIAHSSPVLKLAVG--VDHIYSLAAH----GGIRGWTFTSP 548 (1133)
Q Consensus 484 --~fs~dg~~Lasgs~-DG----~I~vwd~~g~~l~~~~~H~~~V~~l~fs--~~~L~S~s~D----g~I~lW~l~s~ 548 (1133)
+|+|+|+.|+.++. ++ .|+.||+.+.....+ .|...+.+++|+ +++|+....+ +.|.+|++...
T Consensus 360 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 360 FAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp EEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred eeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 39999998876554 44 677778765444333 377789999999 7777665443 45999998654
No 152
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.58 E-value=1.8e-13 Score=154.94 Aligned_cols=266 Identities=9% Similarity=0.052 Sum_probs=162.7
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCC-CcEEEEeCC--CCc-eeeEeC
Q 043350 226 LVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEG-GVIKIWPWE--SIE-KSLSLK 300 (1133)
Q Consensus 226 ~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~D-gtI~iWdl~--~~~-~~l~~~ 300 (1133)
++++++.|+.|++|+++... . ........|...+.+++|+|+|+ |++++.+ +.|++|+++ +.. ..+..
T Consensus 7 l~~~~~~~~~v~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~- 79 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEG-----A-LTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE- 79 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTS-----C-EEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE-
T ss_pred EEEeCCCCCeEEEEEECCCC-----c-EEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccc-
Confidence 44555889999999996311 1 12223345778899999999999 8888876 999999987 221 11100
Q ss_pred CCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeec---CCCceeEEEecCCccee
Q 043350 301 PEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDA---RSKELLKVFNIEGHIEN 377 (1133)
Q Consensus 301 ~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~---~tg~~l~~~~~h~~~v~ 377 (1133)
+... ..+..+...+++...+ +++ ..++.|.+||+ .+++.+..+..+ ..+.
T Consensus 80 ---------------~~~~--~~~~~~~~s~dg~~l~-~~~--------~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~ 132 (343)
T 1ri6_A 80 ---------------SALP--GSLTHISTDHQGQFVF-VGS--------YNAGNVSVTRLEDGLPVGVVDVVEGL-DGCH 132 (343)
T ss_dssp ---------------EECS--SCCSEEEECTTSSEEE-EEE--------TTTTEEEEEEEETTEEEEEEEEECCC-TTBC
T ss_pred ---------------cccC--CCCcEEEEcCCCCEEE-EEe--------cCCCeEEEEECCCCccccccccccCC-CCce
Confidence 0000 0011111112222221 222 45788999999 444555555543 3478
Q ss_pred EEEeCCCCCccccccceEEEEeeC-CCCccccccccccceeeccCCceEEE---EEecCCcccCCCCCEEEEEECCCC-e
Q 043350 378 RVDTQSVQDQPVEDEMKVKFVSSN-KKEKPHGFLQRSRNAIMGAADAVRRV---ATRGAGAFVDDTKRTEAMVLTADG-M 452 (1133)
Q Consensus 378 ~l~~sp~g~~~~e~e~~v~lasgs-~Dg~i~~~~~~~~~~~~~~~~~V~~v---~~~p~g~~~~h~~~V~sl~~spdg-~ 452 (1133)
+++|+|+++. +++++ .++.+..|+.... ..+..+ ... ......+..++++|++ +
T Consensus 133 ~~~~s~dg~~---------l~~~~~~~~~v~~~d~~~~-------~~~~~~~~~~~~-----~~~~~~~~~~~~~pdg~~ 191 (343)
T 1ri6_A 133 SANISPDNRT---------LWVPALKQDRICLFTVSDD-------GHLVAQDPAEVT-----TVEGAGPRHMVFHPNEQY 191 (343)
T ss_dssp CCEECTTSSE---------EEEEEGGGTEEEEEEECTT-------SCEEEEEEEEEE-----CSTTCCEEEEEECTTSSE
T ss_pred EEEECCCCCE---------EEEecCCCCEEEEEEecCC-------Cceeeecccccc-----cCCCCCcceEEECCCCCE
Confidence 8999999987 66665 7777764433210 111111 111 1123467789999999 6
Q ss_pred EEEE-ecCCeEEEEeCCC---Ce--eEEEec---C---Ccce--eEEecCCCEEEEE-ecCCeEEEEeCC--C---Ccce
Q 043350 453 IWSG-CTNGLLVQWDGNG---NR--VSDILH---H---QCAV--QCFCTYGSRMYVG-YVSGYLQILDLD--G---NLTA 512 (1133)
Q Consensus 453 L~sg-s~DG~I~vWd~~g---~~--l~~~~~---h---~~~V--~~fs~dg~~Lasg-s~DG~I~vwd~~--g---~~l~ 512 (1133)
++++ ..++.|.+|+++. .. +..+.. + ...+ .+|+|+|++|+++ ..++.|++||+. + +.+.
T Consensus 192 l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~ 271 (343)
T 1ri6_A 192 AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG 271 (343)
T ss_dssp EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEE
T ss_pred EEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEee
Confidence 6554 4899999999832 21 333321 1 1123 2399999988754 479999999997 2 2344
Q ss_pred eeeccccCeEEeeec--ccceeeec-ccCCeeeccccC
Q 043350 513 SWIAHSSPVLKLAVG--VDHIYSLA-AHGGIRGWTFTS 547 (1133)
Q Consensus 513 ~~~~H~~~V~~l~fs--~~~L~S~s-~Dg~I~lW~l~s 547 (1133)
.+..+.. +.+++|+ +++|++++ .++.|.+|++..
T Consensus 272 ~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 272 FQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp EEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred eecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 4444544 8899998 77777776 689999998653
No 153
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.58 E-value=5.4e-13 Score=150.89 Aligned_cols=269 Identities=9% Similarity=0.054 Sum_probs=165.1
Q ss_pred EeCC-CCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeC-CCcEEEEeCCCCce-
Q 043350 220 VDCG-NRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGE-GGVIKIWPWESIEK- 295 (1133)
Q Consensus 220 ~spd-~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~-DgtI~iWdl~~~~~- 295 (1133)
|.++ +..+++++.++.|.+||+..+ +....+..+...+ +++|+|+|+ |+.++. ++.|.+||+.+...
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~ 75 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTL--------EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK 75 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTC--------CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE
T ss_pred EcCCCCEEEEEecCCCeEEEEeCccc--------ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee
Confidence 4444 445788889999999999862 2333444555666 999999999 666555 89999999976422
Q ss_pred e--eEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCC--ceeEeecCCCceeEEEec
Q 043350 296 S--LSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPL--SFSLWDARSKELLKVFNI 371 (1133)
Q Consensus 296 ~--l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~--~I~lWD~~tg~~l~~~~~ 371 (1133)
. +........ .+.+ .+++...+ ++. ..++ .|.+||+.+++.+..+..
T Consensus 76 ~~~~~~~~~~~~---------~~~~-----------s~dg~~l~-~~~--------~~~~~~~i~v~d~~~~~~~~~~~~ 126 (331)
T 3u4y_A 76 VVAIQEGQSSMA---------DVDI-----------TPDDQFAV-TVT--------GLNHPFNMQSYSFLKNKFISTIPI 126 (331)
T ss_dssp EEEEEECSSCCC---------CEEE-----------CTTSSEEE-ECC--------CSSSSCEEEEEETTTTEEEEEEEC
T ss_pred EEecccCCCCcc---------ceEE-----------CCCCCEEE-Eec--------CCCCcccEEEEECCCCCeEEEEEC
Confidence 1 111111000 0111 13333333 222 1223 899999999999888775
Q ss_pred CCcceeEEEeCCCCCccccccceEEEE-eeCCCCc-cccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECC
Q 043350 372 EGHIENRVDTQSVQDQPVEDEMKVKFV-SSNKKEK-PHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTA 449 (1133)
Q Consensus 372 h~~~v~~l~~sp~g~~~~e~e~~v~la-sgs~Dg~-i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~sp 449 (1133)
+. ....++|+|++++ ++ ++..++. +..|+.... +.+...... ..........++++|
T Consensus 127 ~~-~~~~~~~spdg~~---------l~~~~~~~~~~i~~~~~~~~-------g~~~~~~~~----~~~~~~~~~~~~~sp 185 (331)
T 3u4y_A 127 PY-DAVGIAISPNGNG---------LILIDRSSANTVRRFKIDAD-------GVLFDTGQE----FISGGTRPFNITFTP 185 (331)
T ss_dssp CT-TEEEEEECTTSSC---------EEEEEETTTTEEEEEEECTT-------CCEEEEEEE----EECSSSSEEEEEECT
T ss_pred CC-CccceEECCCCCE---------EEEEecCCCceEEEEEECCC-------CcEeecCCc----cccCCCCccceEECC
Confidence 44 4589999999986 44 4455566 653332210 111111100 112234478899999
Q ss_pred CC-eEEEE-ecCCeEEEEeC-CCCe---eEEEecCCccee-EEecCCCEEEEEe-cCCeEEEEeCCC-Cc--ceeeecc-
Q 043350 450 DG-MIWSG-CTNGLLVQWDG-NGNR---VSDILHHQCAVQ-CFCTYGSRMYVGY-VSGYLQILDLDG-NL--TASWIAH- 517 (1133)
Q Consensus 450 dg-~L~sg-s~DG~I~vWd~-~g~~---l~~~~~h~~~V~-~fs~dg~~Lasgs-~DG~I~vwd~~g-~~--l~~~~~H- 517 (1133)
+| +++.+ ..++.|.+||+ .++. +..+..+..... +|+|+|++|++++ .++.|.+||+.+ ++ +..+..+
T Consensus 186 dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 265 (331)
T 3u4y_A 186 DGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGL 265 (331)
T ss_dssp TSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCC
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccccc
Confidence 99 55554 56899999999 5666 667765533322 2999999877665 578999999974 33 3332222
Q ss_pred ---ccC---eEEeeec--ccceee-ecccCCeeeccccC
Q 043350 518 ---SSP---VLKLAVG--VDHIYS-LAAHGGIRGWTFTS 547 (1133)
Q Consensus 518 ---~~~---V~~l~fs--~~~L~S-~s~Dg~I~lW~l~s 547 (1133)
..+ +..++|+ +++|+. ++.++.|.+|++..
T Consensus 266 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 266 LIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp CCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred ccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 222 2457888 777754 55567999999865
No 154
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.57 E-value=2.7e-14 Score=180.40 Aligned_cols=355 Identities=8% Similarity=-0.049 Sum_probs=201.8
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ec---------CCc
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQ---------ECG 176 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~---------Dg~ 176 (1133)
+.|+|+|++++++ .|+.|++|+..+ ++. ...+.+|... ...+.+++ +|||++|+ +. ++.
T Consensus 21 ~~~s~dg~~~~~~-~d~~i~~~~~~~---g~~-~~~~~~~~~~----~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~ 91 (719)
T 1z68_A 21 PNWISGQEYLHQS-ADNNIVLYNIET---GQS-YTILSNRTMK----SVNASNYGLSPDRQFVYLESDYSKLWRYSYTAT 91 (719)
T ss_dssp CEESSSSEEEEEC-TTSCEEEEESSS---CCE-EEEECHHHHH----TTTCSEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cEECCCCeEEEEc-CCCCEEEEEcCC---CcE-EEEEcccccc----ccceeeEEECCCCCeEEEEecCceeEEeecceE
Confidence 6789999776665 599999999873 333 4444444320 01267888 99999998 33 589
Q ss_pred EEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCC-CCcccc
Q 043350 177 VRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDAN-NPFKEG 255 (1133)
Q Consensus 177 VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~-~~~~~~ 255 (1133)
|++||+.+..... . ... ...+.+++|||||+.||.++ |+.|++|++.++..... ......
T Consensus 92 i~~~d~~~g~~~~---~------------~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~ 152 (719)
T 1z68_A 92 YYIYDLSNGEFVR---G------------NEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGREN 152 (719)
T ss_dssp EEEEETTTTEECC---S------------SCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTT
T ss_pred EEEEECCCCcccc---c------------eec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcC
Confidence 9999998742200 0 001 13578899999999999986 78999999976322000 000000
Q ss_pred cccccCCCC---------eEEEEEeeCCc-EEEEeCC-CcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceee
Q 043350 256 LSWQAHRGP---------VLAMIFSSQGD-LWSGGEG-GVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTV 324 (1133)
Q Consensus 256 ~~l~gH~~~---------V~sl~fsp~g~-L~Sgs~D-gtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v 324 (1133)
..+.||... ..+++|+|||+ |++++.| +.+.+|.+.... .+.... ...+.
T Consensus 153 ~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~-----~~~~~~---------~~~~~----- 213 (719)
T 1z68_A 153 KIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYG-----DEQYPR---------TINIP----- 213 (719)
T ss_dssp TEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECC-----SSSSCE---------EEEEE-----
T ss_pred CeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccC-----CCCCcc---------ceeec-----
Confidence 112233222 25899999999 8888765 556666442100 000000 00000
Q ss_pred eccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCcee---E-----EEecCCcceeEEEeCCCCCccccccceEE
Q 043350 325 NGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELL---K-----VFNIEGHIENRVDTQSVQDQPVEDEMKVK 396 (1133)
Q Consensus 325 ~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l---~-----~~~~h~~~v~~l~~sp~g~~~~e~e~~v~ 396 (1133)
....+. . .....|.+||+.+++.. . .+..+...+..++|+|++++
T Consensus 214 ----yp~~g~------~--------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~--------- 266 (719)
T 1z68_A 214 ----YPKAGA------K--------NPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERV--------- 266 (719)
T ss_dssp ----CCBTTS------C--------CCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEE---------
T ss_pred ----CCCCCC------C--------CCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeE---------
Confidence 000000 0 12346788999887753 2 13357777899999999766
Q ss_pred EEeeCCCC--c--ccccc----ccccceeeccCCceEEEEEecCCcccCCCCCEE-----EEEECCCC-eEEE--EecCC
Q 043350 397 FVSSNKKE--K--PHGFL----QRSRNAIMGAADAVRRVATRGAGAFVDDTKRTE-----AMVLTADG-MIWS--GCTNG 460 (1133)
Q Consensus 397 lasgs~Dg--~--i~~~~----~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~-----sl~~spdg-~L~s--gs~DG 460 (1133)
+++....+ . |..++ ...... ..+.... ..++...+. .+.|+||| .|+. +..+|
T Consensus 267 ~~~~~~~~~~~~~l~~~d~~~~~~~g~~-----~~~~~~~------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g 335 (719)
T 1z68_A 267 CLQWLKRVQNVSVLSICDFREDWQTWDC-----PKTQEHI------EESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDG 335 (719)
T ss_dssp EEEEEESSTTEEEEEEEEECSSSSSEEC-----CGGGEEE------EECSSSCSSSSSCCCCEECTTSSCEEEEEECTTS
T ss_pred EEEEeccccCeEEEEEEcccCCCCCCce-----EEEEecc------cccCCceEccccCCccEECCCCCeEEEEEEccCC
Confidence 55533221 1 22222 110000 0000000 013334444 67799999 4443 44555
Q ss_pred --eEEEEeCCCCeeEEEecCCcceeE--EecCCCEEEEEecC-----CeEEEEeCC---CCc-ceeee----ccccCeEE
Q 043350 461 --LLVQWDGNGNRVSDILHHQCAVQC--FCTYGSRMYVGYVS-----GYLQILDLD---GNL-TASWI----AHSSPVLK 523 (1133)
Q Consensus 461 --~I~vWd~~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~D-----G~I~vwd~~---g~~-l~~~~----~H~~~V~~ 523 (1133)
.|.+|+..+.....+..+...+.. ++ +++.|+..+.+ +.+++|.+. +.. ...+. +|...+..
T Consensus 336 ~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~ 414 (719)
T 1z68_A 336 YKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYT 414 (719)
T ss_dssp CEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEE
T ss_pred ceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEE
Confidence 577778766445666666656655 55 88877766654 888888864 211 22222 36677888
Q ss_pred eeec--cccee-eeccc--CCeeeccccCCC
Q 043350 524 LAVG--VDHIY-SLAAH--GGIRGWTFTSPS 549 (1133)
Q Consensus 524 l~fs--~~~L~-S~s~D--g~I~lW~l~s~~ 549 (1133)
+.|+ +++++ +++.+ ..+.+|++.+..
T Consensus 415 ~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 415 ASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp EEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred EEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 8888 56555 45544 357788876543
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.54 E-value=9.8e-14 Score=164.48 Aligned_cols=128 Identities=12% Similarity=0.092 Sum_probs=84.0
Q ss_pred EEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCc--CcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEE----E
Q 043350 159 LRNIA-CTDTQLWA--GQECGVRFWNLEDSYEP--GAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVW----T 229 (1133)
Q Consensus 159 V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~--~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~La----S 229 (1133)
+..++ ++++.+++ +.|+ +++|+....... ...+...+.. ..+.....+..+|.+++|+|++++|+ +
T Consensus 39 ~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 39 SSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVD----KVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEE----CCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred ccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccc----cCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 45566 67666666 4455 999986542111 0000000000 00111223566899999999999999 8
Q ss_pred EeCCCeEEEEeCCCCCC---CCCCCcccccccccCCCCeEEEEEeeC-Cc-EEEEeCCCcEEEEeCC
Q 043350 230 GHKDGKIRSWKMDQTLD---DANNPFKEGLSWQAHRGPVLAMIFSSQ-GD-LWSGGEGGVIKIWPWE 291 (1133)
Q Consensus 230 gs~Dg~V~vWd~~~~~~---~~~~~~~~~~~l~gH~~~V~sl~fsp~-g~-L~Sgs~DgtI~iWdl~ 291 (1133)
|+.|++|+|||+..... .....+.....+.+|...|++|+|+|+ +. |++|+.||+|++||++
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~ 180 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVT 180 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEES
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcC
Confidence 89999999999864210 001122235567889999999999998 66 9999999999999974
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.52 E-value=1.4e-12 Score=148.22 Aligned_cols=302 Identities=11% Similarity=0.051 Sum_probs=171.0
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE---ecCCcEEEeeCCC
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA---GQECGVRFWNLED 184 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla---s~Dg~VrvWdl~~ 184 (1133)
+.+++++.++++++.++.|++||..+ ++. +..+..+.. ..+..++ +++|+.+. ..++.|.+||+.+
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~---~~~-~~~~~~~~~------~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t 74 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVAS---DTV-YKSCVMPDK------FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT 74 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTT---TEE-EEEEECSSC------CSSCEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCC---CcE-EEEEecCCC------CCCceeEECCCCCEEEEEeCCCCcEEEEeCCC
Confidence 45688899999999999999999873 433 555544331 0245667 88887544 4678999999876
Q ss_pred CCCcCcCCCccccCCCCCCCceeeccC-----CCCeEEEEEeCCCCEEEEEeCC------------CeEEEEeCCCCCCC
Q 043350 185 SYEPGAGIGGRVRRGDEDAAPFYESAN-----TSPTMCLMVDCGNRLVWTGHKD------------GKIRSWKMDQTLDD 247 (1133)
Q Consensus 185 ~~~~~~gh~~~v~~g~~~~~~~~~~~h-----~s~V~~la~spd~~~LaSgs~D------------g~V~vWd~~~~~~~ 247 (1133)
..... .+...+ ...+.+++|+|++++|++++.+ +.|.+||+..+..
T Consensus 75 ~~~~~----------------~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~- 137 (349)
T 1jmx_B 75 CKNTF----------------HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE- 137 (349)
T ss_dssp TEEEE----------------EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-
T ss_pred CcEEE----------------EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc-
Confidence 32110 000011 1236789999999999999866 9999999875211
Q ss_pred CCCCcccccccccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeecc
Q 043350 248 ANNPFKEGLSWQAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGA 327 (1133)
Q Consensus 248 ~~~~~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~ 327 (1133)
.+.+..+. +...+.+++|+|+|+++.++. .|.+||+.+......+......
T Consensus 138 ----~~~~~~~~-~~~~~~~~~~s~dg~l~~~~~--~i~~~d~~~~~~~~~~~~~~~~---------------------- 188 (349)
T 1jmx_B 138 ----AKPVRTFP-MPRQVYLMRAADDGSLYVAGP--DIYKMDVKTGKYTVALPLRNWN---------------------- 188 (349)
T ss_dssp ----BCCSEEEE-CCSSCCCEEECTTSCEEEESS--SEEEECTTTCCEEEEECSTTCC----------------------
T ss_pred ----cceeeecc-CCCcccceeECCCCcEEEccC--cEEEEeCCCCceeccccccccC----------------------
Confidence 12222222 344689999999999544543 4999998763221111100000
Q ss_pred ccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCcccc--ccceEEEEeeCCCCc
Q 043350 328 CSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVE--DEMKVKFVSSNKKEK 405 (1133)
Q Consensus 328 ~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e--~e~~v~lasgs~Dg~ 405 (1133)
.+. . .....+.+|.......... ....+++++++..... .....-+......+
T Consensus 189 ----~~~----~----------~~~~~~~~~~~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~- 243 (349)
T 1jmx_B 189 ----RKG----Y----------SAPDVLYFWPHQSPRHEFS------MLYTIARFKDDKQDPATADLLYGYLSVDLKTG- 243 (349)
T ss_dssp ----CTT----B----------CCCBCCCCCCCCCTTCEEE------EEEEEEEC-------CCCEEEEEEEEEETTTC-
T ss_pred ----Ccc----c----------cCccceeeecCCCcceeEE------eeeeeeecCCCcCCccccccceeEEEEeccCC-
Confidence 000 0 0001112232221111110 1224555554422000 00000011111112
Q ss_pred cccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECC-CC-eEEEEecCCeEEEEeC-CCCeeEEEecCCcce
Q 043350 406 PHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTA-DG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAV 482 (1133)
Q Consensus 406 i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~sp-dg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V 482 (1133)
.+..+.+. .+...+..++++| ++ .++++ ++.|.+||+ +++.+..+..+.. +
T Consensus 244 -----------------~~~~~~~~------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~-~ 297 (349)
T 1jmx_B 244 -----------------KTHTQEFA------DLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHT-Y 297 (349)
T ss_dssp -----------------CEEEEEEE------ECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSC-C
T ss_pred -----------------cEEecccc------cCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCC-c
Confidence 22222222 1344678889999 99 77777 889999999 5566666654332 3
Q ss_pred eE--EecCCCEEEEEecCCeEEEEeCCC-Ccceeeecc
Q 043350 483 QC--FCTYGSRMYVGYVSGYLQILDLDG-NLTASWIAH 517 (1133)
Q Consensus 483 ~~--fs~dg~~Lasgs~DG~I~vwd~~g-~~l~~~~~H 517 (1133)
.+ |+++|++|++++.++.|++||++. +.+..+..+
T Consensus 298 ~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 298 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp CEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred cceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 33 999999999999999999999974 555555443
No 157
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.52 E-value=1.1e-12 Score=149.88 Aligned_cols=276 Identities=11% Similarity=0.086 Sum_probs=170.1
Q ss_pred cCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeC---CCeEEEEeCCCCCCCCC
Q 043350 173 QECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHK---DGKIRSWKMDQTLDDAN 249 (1133)
Q Consensus 173 ~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~---Dg~V~vWd~~~~~~~~~ 249 (1133)
.++.|.+|.++.....+. ......+...+..++|+|+++ |++++. ++.|.+|++..+.
T Consensus 14 ~~~~i~v~~~d~~tg~~~--------------~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~---- 74 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLT--------------NDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQT---- 74 (347)
T ss_dssp SCCEEEEEEEETTTTEEE--------------EEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTE----
T ss_pred CCCCEEEEEEcCCCCeEE--------------EeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCc----
Confidence 356788888765221110 111122345667899999999 555544 6899999996511
Q ss_pred CCcccccccccCCCCeEEEEEeeCCc-EEEEe-CCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeecc
Q 043350 250 NPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGG-EGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGA 327 (1133)
Q Consensus 250 ~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs-~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~ 327 (1133)
.+.+..+..|...+..++|+|+|+ |++++ .+++|.+|++... +.... ...+.
T Consensus 75 --~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~---------g~~~~-------~~~~~-------- 128 (347)
T 3hfq_A 75 --AHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAAD---------GALTL-------TDTVQ-------- 128 (347)
T ss_dssp --EEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTT---------SCEEE-------EEEEE--------
T ss_pred --EEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCC---------CCeee-------cceee--------
Confidence 134445566778899999999999 88877 7899999998521 00000 00000
Q ss_pred ccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccc
Q 043350 328 CSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPH 407 (1133)
Q Consensus 328 ~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~ 407 (1133)
. . ..+.. .......+..++|+|++++ +++...++.+.
T Consensus 129 -------------~--------~----------~~~p~---~~~~~~~~~~~~~spdg~l---------~v~~~~~~~v~ 165 (347)
T 3hfq_A 129 -------------H--------S----------GHGPR---PEQDGSHIHYTDLTPDNRL---------AVIDLGSDKVY 165 (347)
T ss_dssp -------------C--------C----------CCCSS---TTCSSCCEEEEEECTTSCE---------EEEETTTTEEE
T ss_pred -------------c--------C----------CCCCC---ccccCCCceEEEECCCCcE---------EEEeCCCCEEE
Confidence 0 0 00000 0012334778999999988 88888888776
Q ss_pred cccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEE-EecCCeEEEEeCC---CC--eeEEEecCC-
Q 043350 408 GFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWS-GCTNGLLVQWDGN---GN--RVSDILHHQ- 479 (1133)
Q Consensus 408 ~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~s-gs~DG~I~vWd~~---g~--~l~~~~~h~- 479 (1133)
.|+... .+.+..+... ..........++|+||| +|++ +..++.|.+|+++ ++ .+..+....
T Consensus 166 ~~~~~~-------~g~~~~~~~~----~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~ 234 (347)
T 3hfq_A 166 VYNVSD-------AGQLSEQSVL----TMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPA 234 (347)
T ss_dssp EEEECT-------TSCEEEEEEE----ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCT
T ss_pred EEEECC-------CCcEEEeeeE----EcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCC
Confidence 443221 0111111100 01122356779999999 5555 5678999999984 32 233333322
Q ss_pred -----cceeE--EecCCCEEEE-EecCCeEEEEeCC--C--CcceeeeccccCeEEeeec--ccceeeecc-cCCeeecc
Q 043350 480 -----CAVQC--FCTYGSRMYV-GYVSGYLQILDLD--G--NLTASWIAHSSPVLKLAVG--VDHIYSLAA-HGGIRGWT 544 (1133)
Q Consensus 480 -----~~V~~--fs~dg~~Las-gs~DG~I~vwd~~--g--~~l~~~~~H~~~V~~l~fs--~~~L~S~s~-Dg~I~lW~ 544 (1133)
..+.+ |+|||++|++ +..++.|.+|++. + +.+..+..|...+..++|+ +++|++++. ++.|.+|+
T Consensus 235 ~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~ 314 (347)
T 3hfq_A 235 DYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYA 314 (347)
T ss_dssp TCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEE
Confidence 22444 9999998855 4568999999986 2 3455566677778999999 777877765 48899997
Q ss_pred ccC
Q 043350 545 FTS 547 (1133)
Q Consensus 545 l~s 547 (1133)
+..
T Consensus 315 ~d~ 317 (347)
T 3hfq_A 315 RDL 317 (347)
T ss_dssp ECT
T ss_pred EeC
Confidence 643
No 158
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.51 E-value=2e-13 Score=168.01 Aligned_cols=262 Identities=11% Similarity=-0.011 Sum_probs=165.3
Q ss_pred cccCCCCCEEEEecC-CCeEEeccCCCCCCCCCCeeeeccCC-CccccccceEEEEE-eCCCCeEE-ec----CCcEEEe
Q 043350 109 KPFQPMVEFIGSGGG-TGIFKVPSRAAVHPGRPPCLELRPHP-LKETQAGRFLRNIA-CTDTQLWA-GQ----ECGVRFW 180 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~-dg~irlW~~~~~~~g~~~~~~l~~H~-~~~~~~g~~V~~v~-s~dg~lla-s~----Dg~VrvW 180 (1133)
+.|+|||++||.++. ||+++||+++ +.. ...+..|. . .+..++ +|| ++++ +. +...++|
T Consensus 27 ~~~~~DG~~la~~s~~~g~~~lw~~~----~g~-~~~lt~~~~~-------~~~~~~~spd-~~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 27 LQGVVDGDKLLVVGFSEGSVNAYLYD----GGE-TVKLNREPIN-------SVLDPHYGVG-RVILVRDVSKGAEQHALF 93 (582)
T ss_dssp EEEEETTTEEEEEEEETTEEEEEEEE----TTE-EEECCSSCCS-------EECEECTTCS-EEEEEEECSTTSCCEEEE
T ss_pred eecCCCCCeEEEEEccCCceeEEEEc----CCC-cEeeeccccc-------ccccccCCCC-eEEEEeccCCCCcceEEE
Confidence 778999999999887 9999999975 444 44555555 4 688888 888 6666 32 3456776
Q ss_pred eCCC--CCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCC--EEEEEeCCCeEEEEeCCCCCCCCCCCccccc
Q 043350 181 NLED--SYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNR--LVWTGHKDGKIRSWKMDQTLDDANNPFKEGL 256 (1133)
Q Consensus 181 dl~~--~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~--~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~ 256 (1133)
.+.. .... . .. .....+...+|+|+++ .+++++.|+ +.+||+.+ ....
T Consensus 94 ~~~~~~~g~~----------------~-~l-~~~~~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~---------g~~~ 145 (582)
T 3o4h_A 94 KVNTSRPGEE----------------Q-RL-EAVKPMRILSGVDTGEAVVFTGATEDR-VALYALDG---------GGLR 145 (582)
T ss_dssp EEETTSTTCC----------------E-EC-TTSCSBEEEEEEECSSCEEEEEECSSC-EEEEEEET---------TEEE
T ss_pred EEeccCCCcc----------------c-cc-cCCCCceeeeeCCCCCeEEEEecCCCC-ceEEEccC---------CcEE
Confidence 5533 1100 0 01 1122344667888775 445555554 55999976 3333
Q ss_pred ccccCCCCeEEEEEeeCCc-EEEEeCC----CcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCC
Q 043350 257 SWQAHRGPVLAMIFSSQGD-LWSGGEG----GVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSIS 331 (1133)
Q Consensus 257 ~l~gH~~~V~sl~fsp~g~-L~Sgs~D----gtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~ 331 (1133)
.+..+.. .+++|+|||+ |++++.| +.|++||+
T Consensus 146 ~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~----------------------------------------- 182 (582)
T 3o4h_A 146 ELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNL----------------------------------------- 182 (582)
T ss_dssp EEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEET-----------------------------------------
T ss_pred EeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcC-----------------------------------------
Confidence 3333433 8999999999 8877766 44555554
Q ss_pred CCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCC--ccccc
Q 043350 332 STEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKE--KPHGF 409 (1133)
Q Consensus 332 ~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg--~i~~~ 409 (1133)
.+++. ..+..+...+..++|||||+. |+++..++ .|+.+
T Consensus 183 -----------------------------~~g~~-~~l~~~~~~~~~~~~SpDG~~---------l~~~~~~~~~~i~~~ 223 (582)
T 3o4h_A 183 -----------------------------SSGGL-RVFDSGEGSFSSASISPGMKV---------TAGLETAREARLVTV 223 (582)
T ss_dssp -----------------------------TTCCC-EEECCSSCEEEEEEECTTSCE---------EEEEECSSCEEEEEE
T ss_pred -----------------------------CCCCc-eEeecCCCccccceECCCCCE---------EEEccCCCeeEEEEE
Confidence 33333 244556666789999999999 88777777 55433
Q ss_pred ccc--ccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCCCCeeEEEecCCcceeE--
Q 043350 410 LQR--SRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGNGNRVSDILHHQCAVQC-- 484 (1133)
Q Consensus 410 ~~~--~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g~~l~~~~~h~~~V~~-- 484 (1133)
+.. ....+.++...+..+. ........|+||| .+++++.||++++|++ |+.+. .....|.+
T Consensus 224 d~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~spdg~~~~~~~~~g~~~l~~~-g~~~~---~~~~~v~~~~ 289 (582)
T 3o4h_A 224 DPRDGSVEDLELPSKDFSSYR----------PTAITWLGYLPDGRLAVVARREGRSAVFID-GERVE---APQGNHGRVV 289 (582)
T ss_dssp CTTTCCEEECCCSCSHHHHHC----------CSEEEEEEECTTSCEEEEEEETTEEEEEET-TEEEC---CCSSEEEEEE
T ss_pred cCCCCcEEEccCCCcChhhhh----------hccccceeEcCCCcEEEEEEcCCcEEEEEE-CCeec---cCCCceEEEE
Confidence 321 1111111111111000 0112233399999 8899999999999999 76554 23355655
Q ss_pred EecCCCEEEEEecCC---eEEEEeCCC
Q 043350 485 FCTYGSRMYVGYVSG---YLQILDLDG 508 (1133)
Q Consensus 485 fs~dg~~Lasgs~DG---~I~vwd~~g 508 (1133)
|+ +|+++++++.+. .|++||..+
T Consensus 290 ~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 290 LW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred ec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 88 999999988774 477888765
No 159
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.51 E-value=5.9e-13 Score=146.59 Aligned_cols=215 Identities=12% Similarity=0.061 Sum_probs=151.4
Q ss_pred EEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCC-CceeeEeCCCCceE
Q 043350 229 TGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWES-IEKSLSLKPEEKHM 306 (1133)
Q Consensus 229 Sgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~-~~~~l~~~~~~~~l 306 (1133)
+++.|++|++||+.. .....+..|...|.+++|+|+|+ |++++ ++.|++||+.+ .
T Consensus 17 ~~~~~~~i~~~d~~~---------~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~------------- 73 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRT---------RKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP------------- 73 (297)
T ss_dssp -CCCCEEEEEEETTT---------TEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC-------------
T ss_pred CCCcceeEEEEeCCC---------CceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC-------------
Confidence 456789999999987 44556777999999999999999 88776 78899998753 2
Q ss_pred EEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecC-CcceeEEEeCCCC
Q 043350 307 AALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIE-GHIENRVDTQSVQ 385 (1133)
Q Consensus 307 ~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h-~~~v~~l~~sp~g 385 (1133)
+....+..+ ...+.+++|+|++
T Consensus 74 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 74 ---------------------------------------------------------SPEKVDTGFATICNNDHGISPDG 96 (297)
T ss_dssp ---------------------------------------------------------SCEECCCTTCCCBCSCCEECTTS
T ss_pred ---------------------------------------------------------CceEeccccccccccceEECCCC
Confidence 111111122 2456778999999
Q ss_pred CccccccceEEEEeeCCC--CccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEE-EEecCCe
Q 043350 386 DQPVEDEMKVKFVSSNKK--EKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIW-SGCTNGL 461 (1133)
Q Consensus 386 ~~~~e~e~~v~lasgs~D--g~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~-sgs~DG~ 461 (1133)
++ +++++.+ +....|.-. ........ +.. ...+..++++|++ .|+ +++.|+.
T Consensus 97 ~~---------l~~~~~~~~~~~~l~~~~------~~~~~~~~--------~~~-~~~~~~~~~spdg~~l~~~~~~~~~ 152 (297)
T 2ojh_A 97 AL---------YAISDKVEFGKSAIYLLP------STGGTPRL--------MTK-NLPSYWHGWSPDGKSFTYCGIRDQV 152 (297)
T ss_dssp SE---------EEEEECTTTSSCEEEEEE------TTCCCCEE--------CCS-SSSEEEEEECTTSSEEEEEEEETTE
T ss_pred CE---------EEEEEeCCCCcceEEEEE------CCCCceEE--------eec-CCCccceEECCCCCEEEEEECCCCc
Confidence 98 8887733 333211110 00001110 111 2237788899999 555 7889999
Q ss_pred EEEEeC--CCCeeEEEecCCcceeE--EecCCCEEEEEe-cCCeEEEEeCC--CCcceeeeccccCeEEeeec--cccee
Q 043350 462 LVQWDG--NGNRVSDILHHQCAVQC--FCTYGSRMYVGY-VSGYLQILDLD--GNLTASWIAHSSPVLKLAVG--VDHIY 532 (1133)
Q Consensus 462 I~vWd~--~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs-~DG~I~vwd~~--g~~l~~~~~H~~~V~~l~fs--~~~L~ 532 (1133)
+++|++ .+.....+..+...+.+ |+|+|++|++++ .++.++||++. +..+..+..|...+..++|+ +++|+
T Consensus 153 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 232 (297)
T 2ojh_A 153 FDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVV 232 (297)
T ss_dssp EEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEE
T ss_pred eEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEE
Confidence 999985 45566677777777877 999999888766 58999999874 56677788888899999998 88888
Q ss_pred eeccc-----------CCeeeccccC
Q 043350 533 SLAAH-----------GGIRGWTFTS 547 (1133)
Q Consensus 533 S~s~D-----------g~I~lW~l~s 547 (1133)
+++.+ +.|.+|++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 233 FVSYDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp EEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred EEEcCCCCCcccccCceEEEEEecCC
Confidence 88776 4588888654
No 160
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.50 E-value=6.1e-13 Score=150.16 Aligned_cols=269 Identities=12% Similarity=0.099 Sum_probs=161.2
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccc-cCCC-CeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCcee--eE
Q 043350 225 RLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQ-AHRG-PVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKS--LS 298 (1133)
Q Consensus 225 ~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~-gH~~-~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~--l~ 298 (1133)
++|++++.+++|.+||+..+ +.+..+. ++.. .+.+++|+|+|+ +++++.++.|.+||+.+.... +.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~ 73 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM--------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID 73 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT--------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred cEEEEcCCCCeEEEEECCCC--------cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEE
Confidence 47899999999999999761 2233333 2222 478999999997 566677899999999764222 22
Q ss_pred eCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEec----CCCceeEeecCCCceeEEEecCCc
Q 043350 299 LKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCA----QPLSFSLWDARSKELLKVFNIEGH 374 (1133)
Q Consensus 299 ~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss----~d~~I~lWD~~tg~~l~~~~~h~~ 374 (1133)
....... ......+...+++...+++... ...... .++.|.+||+.+++.+..+.. ..
T Consensus 74 ~~~~~~~---------------~~~~~~~~~s~dg~~l~~~~~~--~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~ 135 (337)
T 1pby_B 74 LSTPEER---------------VKSLFGAALSPDGKTLAIYESP--VRLELTHFEVQPTRVALYDAETLSRRKAFEA-PR 135 (337)
T ss_dssp CCBTTEE---------------EECTTCEEECTTSSEEEEEEEE--EEECSSCEEECCCEEEEEETTTTEEEEEEEC-CS
T ss_pred cCCcccc---------------cccccceEECCCCCEEEEEecc--cccccccccccCceEEEEECCCCcEEEEEeC-CC
Confidence 1110000 0000111111233333332210 000000 468999999999988887765 44
Q ss_pred ceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eE
Q 043350 375 IENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MI 453 (1133)
Q Consensus 375 ~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L 453 (1133)
.+..++|+|++++ ++++ ++.+..++....... .. +. .+ ..... +.++|++ .+
T Consensus 136 ~~~~~~~s~dg~~---------l~~~--~~~i~~~d~~~~~~~-------~~--~~-~~---~~~~~---~~~s~dg~~l 188 (337)
T 1pby_B 136 QITMLAWARDGSK---------LYGL--GRDLHVMDPEAGTLV-------ED--KP-IQ---SWEAE---TYAQPDVLAV 188 (337)
T ss_dssp SCCCEEECTTSSC---------EEEE--SSSEEEEETTTTEEE-------EE--EC-ST---TTTTT---TBCCCBCCCC
T ss_pred CcceeEECCCCCE---------EEEe--CCeEEEEECCCCcEe-------ee--ee-cc---ccCCC---ceeCCCccEE
Confidence 5778999999998 7777 456654432211110 00 00 00 00011 1355665 33
Q ss_pred EEEec-CC-----------------------eEEEEeCC-CCee-EEEecCCcceeE--EecCCCEEEEEecCCeEEEEe
Q 043350 454 WSGCT-NG-----------------------LLVQWDGN-GNRV-SDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILD 505 (1133)
Q Consensus 454 ~sgs~-DG-----------------------~I~vWd~~-g~~l-~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd 505 (1133)
+..+. ++ .|.+||.. ++.. ..+..+...+.+ |+|+|++|+++ ++.|++||
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d 266 (337)
T 1pby_B 189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFD 266 (337)
T ss_dssp CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEE
T ss_pred eeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEE
Confidence 33322 22 57899994 4443 223345555544 99999999988 79999999
Q ss_pred CCC-CcceeeeccccCeEEeeec--ccceeeecccCCeeeccccCCC
Q 043350 506 LDG-NLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTSPS 549 (1133)
Q Consensus 506 ~~g-~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s~~ 549 (1133)
+.. +.+..+.. ...+.+++|+ +++|++++.++.|.+||+.+..
T Consensus 267 ~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 267 LEKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp TTTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred CCCCcCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 975 45554443 3567889998 7889988999999999987643
No 161
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.50 E-value=3.7e-12 Score=145.35 Aligned_cols=274 Identities=12% Similarity=0.075 Sum_probs=162.8
Q ss_pred CCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE-ec---CCcEEEeeCCCCCCcCcCCCcccc
Q 043350 123 GTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA-GQ---ECGVRFWNLEDSYEPGAGIGGRVR 197 (1133)
Q Consensus 123 ~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla-s~---Dg~VrvWdl~~~~~~~~gh~~~v~ 197 (1133)
.++.+.+|..+.. .++........+.. ....++ +++|++++ +. ++.|++|++.+.....
T Consensus 14 ~~~~i~v~~~d~~-tg~~~~~~~~~~~~-------~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~-------- 77 (347)
T 3hfq_A 14 TSQGIYQGTLDTT-AKTLTNDGLLAATQ-------NPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHK-------- 77 (347)
T ss_dssp SCCEEEEEEEETT-TTEEEEEEEEEECS-------CCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEE--------
T ss_pred CCCCEEEEEEcCC-CCeEEEeeeeeccC-------CcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEE--------
Confidence 4566888876520 12221112223333 455677 89999666 43 5899999986421110
Q ss_pred CCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCCCCCCCccccccccc---------CCCCeEE
Q 043350 198 RGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGH-KDGKIRSWKMDQTLDDANNPFKEGLSWQA---------HRGPVLA 267 (1133)
Q Consensus 198 ~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs-~Dg~V~vWd~~~~~~~~~~~~~~~~~l~g---------H~~~V~s 267 (1133)
......+...+.+++|+|++++|++++ .+++|.+|++..... ...+..+.. +...+.+
T Consensus 78 -------~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~-----~~~~~~~~~~~~~p~~~~~~~~~~~ 145 (347)
T 3hfq_A 78 -------LNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGA-----LTLTDTVQHSGHGPRPEQDGSHIHY 145 (347)
T ss_dssp -------EEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSC-----EEEEEEEECCCCCSSTTCSSCCEEE
T ss_pred -------eeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCC-----eeecceeecCCCCCCccccCCCceE
Confidence 001123455678999999999888888 789999999864111 122222211 2335889
Q ss_pred EEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceE
Q 043350 268 MIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARAR 346 (1133)
Q Consensus 268 l~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~ 346 (1133)
++|+|+|+ +++...++.|.+|++... +..
T Consensus 146 ~~~spdg~l~v~~~~~~~v~~~~~~~~---------g~~----------------------------------------- 175 (347)
T 3hfq_A 146 TDLTPDNRLAVIDLGSDKVYVYNVSDA---------GQL----------------------------------------- 175 (347)
T ss_dssp EEECTTSCEEEEETTTTEEEEEEECTT---------SCE-----------------------------------------
T ss_pred EEECCCCcEEEEeCCCCEEEEEEECCC---------CcE-----------------------------------------
Confidence 99999999 777777889999987520 000
Q ss_pred EEecCCCceeEeecCCCceeEEEec-CCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCce-
Q 043350 347 VWCAQPLSFSLWDARSKELLKVFNI-EGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAV- 424 (1133)
Q Consensus 347 vwss~d~~I~lWD~~tg~~l~~~~~-h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V- 424 (1133)
. .+..+.. .......++|+|++++ + ++++..++.+..|+... .....
T Consensus 176 ---------~--------~~~~~~~~~g~~p~~~~~spdg~~-------l-~v~~~~~~~v~v~~~~~------~~g~~~ 224 (347)
T 3hfq_A 176 ---------S--------EQSVLTMEAGFGPRHLVFSPDGQY-------A-FLAGELSSQIASLKYDT------QTGAFT 224 (347)
T ss_dssp ---------E--------EEEEEECCTTCCEEEEEECTTSSE-------E-EEEETTTTEEEEEEEET------TTTEEE
T ss_pred ---------E--------EeeeEEcCCCCCCceEEECCCCCE-------E-EEEeCCCCEEEEEEecC------CCCceE
Confidence 0 0000111 1123456899999985 0 44456677665332110 00111
Q ss_pred --EEEEEecCCcccCCCCCEEEEEECCCC-eE-EEEecCCeEEEEeCC--C--CeeEEEecCCcceeE--EecCCCEEEE
Q 043350 425 --RRVATRGAGAFVDDTKRTEAMVLTADG-MI-WSGCTNGLLVQWDGN--G--NRVSDILHHQCAVQC--FCTYGSRMYV 494 (1133)
Q Consensus 425 --~~v~~~p~g~~~~h~~~V~sl~~spdg-~L-~sgs~DG~I~vWd~~--g--~~l~~~~~h~~~V~~--fs~dg~~Las 494 (1133)
..+...+.+ + .....+..++|+|+| +| ++...++.|.+|+++ | ..+..+..+...+.+ |+|||++|++
T Consensus 225 ~~~~~~~~~~~-~-~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v 302 (347)
T 3hfq_A 225 QLGIVKTIPAD-Y-TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVV 302 (347)
T ss_dssp EEEEEESSCTT-C-CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEE
T ss_pred EeeeeeecCCC-C-CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEE
Confidence 111111111 0 112458889999999 66 455668999999984 3 345555555555555 9999999988
Q ss_pred Eec-CCeEEEEeCC
Q 043350 495 GYV-SGYLQILDLD 507 (1133)
Q Consensus 495 gs~-DG~I~vwd~~ 507 (1133)
++. ++.|.+|+++
T Consensus 303 ~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 303 VNQNTDNATLYARD 316 (347)
T ss_dssp EETTTTEEEEEEEC
T ss_pred EEcCCCcEEEEEEe
Confidence 875 4899999654
No 162
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.49 E-value=5.5e-12 Score=143.58 Aligned_cols=155 Identities=11% Similarity=-0.016 Sum_probs=105.0
Q ss_pred cccCCCCCEEEEecC-------CCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeE-E--ecCCcE
Q 043350 109 KPFQPMVEFIGSGGG-------TGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLW-A--GQECGV 177 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~-------dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~ll-a--s~Dg~V 177 (1133)
+.++|+|++|++++. ++.|.+||..+ ++. ...+... . .+..++ +++|+.+ + ..++.|
T Consensus 46 ~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~---~~~-~~~~~~~-~-------~~~~~~~s~dg~~l~v~~~~~~~v 113 (353)
T 3vgz_A 46 MAYSQQENALWLATSQSRKLDKGGVVYRLDPVT---LEV-TQAIHND-L-------KPFGATINNTTQTLWFGNTVNSAV 113 (353)
T ss_dssp EEEETTTTEEEEEECCCTTTEESEEEEEECTTT---CCE-EEEEEES-S-------CCCSEEEETTTTEEEEEETTTTEE
T ss_pred eEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC---CeE-EEEEecC-C-------CcceEEECCCCCEEEEEecCCCEE
Confidence 678999998888764 56899999873 333 4444332 2 345567 8888844 4 457899
Q ss_pred EEeeCCCCCC--cCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEe--CCCeEEEEeCCCCCCCCCCCcc
Q 043350 178 RFWNLEDSYE--PGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGH--KDGKIRSWKMDQTLDDANNPFK 253 (1133)
Q Consensus 178 rvWdl~~~~~--~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs--~Dg~V~vWd~~~~~~~~~~~~~ 253 (1133)
.+||..+... .+..+.+ . .........+.+++|+|+++.+++++ .++.|.+||...+ +
T Consensus 114 ~~~d~~~~~~~~~~~~~~~-------~---~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~--------~ 175 (353)
T 3vgz_A 114 TAIDAKTGEVKGRLVLDDR-------K---RTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI--------K 175 (353)
T ss_dssp EEEETTTCCEEEEEESCCC-------C---CCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT--------E
T ss_pred EEEeCCCCeeEEEEecCCC-------c---cccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC--------c
Confidence 9999876321 1111100 0 00000011268899999999887776 4789999999761 3
Q ss_pred cccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCC
Q 043350 254 EGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESI 293 (1133)
Q Consensus 254 ~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~ 293 (1133)
....+..+...+.+++|+|+|+ |++++.++.|.+||+.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~ 216 (353)
T 3vgz_A 176 LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADN 216 (353)
T ss_dssp EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTT
T ss_pred eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 3444444566688999999999 999999999999999764
No 163
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.49 E-value=1.5e-11 Score=141.21 Aligned_cols=299 Identities=12% Similarity=0.129 Sum_probs=167.7
Q ss_pred cCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCC----CeEEEEeCCCCCCCC
Q 043350 173 QECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKD----GKIRSWKMDQTLDDA 248 (1133)
Q Consensus 173 ~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~D----g~V~vWd~~~~~~~~ 248 (1133)
.++.|.+|.++.....+. ..... +...+..++|+|++++|++++.+ +.|.+|+++...
T Consensus 25 ~~~~i~~~~~d~~~g~~~--------------~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~--- 86 (361)
T 3scy_A 25 NSKGIYTFRFNEETGESL--------------PLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK--- 86 (361)
T ss_dssp SCCEEEEEEEETTTCCEE--------------EEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT---
T ss_pred CCCCEEEEEEeCCCCCEE--------------Eeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC---
Confidence 467899998764222110 11111 55667889999999999999886 899999987511
Q ss_pred CCCcccccccccCCCCeEEEEEeeCCc-EEEEe-CCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeec
Q 043350 249 NNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGG-EGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNG 326 (1133)
Q Consensus 249 ~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs-~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~ 326 (1133)
.....+.....+......+++ +|+ |++++ .+++|.+|++......... . . .......... .
T Consensus 87 -g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~---~-~---------~~~~~g~~~~-~ 149 (361)
T 3scy_A 87 -GTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPA---S-D---------VIEFKGSGPD-K 149 (361)
T ss_dssp -TEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSC---S-E---------EEECCCCCSC-T
T ss_pred -CcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCccc---c-e---------eEEccCCCCC-c
Confidence 112333344445667778888 777 66665 6889999998642100000 0 0 0000000000 0
Q ss_pred cccCCCCC-eEEEEecCCc-eEEEecCCCceeEeecCCCc-------ee-----EEE-ecCCcceeEEEeCCCCCccccc
Q 043350 327 ACSISSTE-IKCMLSDHAR-ARVWCAQPLSFSLWDARSKE-------LL-----KVF-NIEGHIENRVDTQSVQDQPVED 391 (1133)
Q Consensus 327 ~~~~~~~~-~~~l~S~d~~-i~vwss~d~~I~lWD~~tg~-------~l-----~~~-~~h~~~v~~l~~sp~g~~~~e~ 391 (1133)
... ..+. ..+..+.+++ +.+-+..++.|.+|++.... +. ..+ .........++|+|++++
T Consensus 150 ~~~-~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~---- 224 (361)
T 3scy_A 150 ERQ-TMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKF---- 224 (361)
T ss_dssp TTC-SSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSE----
T ss_pred ccc-CCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCE----
Confidence 000 0000 1122223332 22222567889999877433 21 122 233445778999999987
Q ss_pred cceEEEEeeC-CCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEec--CCeEEEEeC
Q 043350 392 EMKVKFVSSN-KKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCT--NGLLVQWDG 467 (1133)
Q Consensus 392 e~~v~lasgs-~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~--DG~I~vWd~ 467 (1133)
+++++ .++.|..|+... +.+..+... .....+......++|+||| +|+++.. ++.|.+|++
T Consensus 225 -----l~v~~~~~~~v~v~~~~~--------g~~~~~~~~--~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~ 289 (361)
T 3scy_A 225 -----AYLINEIGGTVIAFRYAD--------GMLDEIQTV--AADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKV 289 (361)
T ss_dssp -----EEEEETTTCEEEEEEEET--------TEEEEEEEE--ESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEE
T ss_pred -----EEEEcCCCCeEEEEEecC--------CceEEeEEE--ecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEE
Confidence 65555 677776443221 111111111 0122334456899999999 7766665 489999998
Q ss_pred C---CC--eeEEEecCCcceeE--EecCCCEEEEEe-cCCeEEEEeCC---CCcceee-eccccCeEEeeec
Q 043350 468 N---GN--RVSDILHHQCAVQC--FCTYGSRMYVGY-VSGYLQILDLD---GNLTASW-IAHSSPVLKLAVG 527 (1133)
Q Consensus 468 ~---g~--~l~~~~~h~~~V~~--fs~dg~~Lasgs-~DG~I~vwd~~---g~~l~~~-~~H~~~V~~l~fs 527 (1133)
+ ++ .+..+.. ...+.+ |+|+|++|++++ .++.|.+|+++ +++.... ..+...+.+|.|.
T Consensus 290 ~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 290 DETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred cCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 4 33 3444444 333444 999999998888 67999997654 3332221 2345677888773
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.48 E-value=5.8e-12 Score=159.73 Aligned_cols=343 Identities=10% Similarity=0.013 Sum_probs=191.8
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecC---------Cc
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQE---------CG 176 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~D---------g~ 176 (1133)
+.++|||++|+++ ||.|++|+..+ ++. ...+.+|.... .......+. ||||+.++ +.+ +.
T Consensus 22 ~~w~~dg~~~~~~--~~~i~~~~~~~---~~~-~~~~~~~~~~~--~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 22 LRWISDHEYLYKQ--ENNILVFNAEY---GNS-SVFLENSTFDE--FGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp EEECSSSEEEEEE--TTEEEEEETTT---CCE-EEEECTTTTTT--CCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cEECCCCcEEEEc--CCcEEEEECCC---Cce-EEEEechhhhh--hcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 7789999999997 89999999874 444 55677776521 111223467 99999988 443 56
Q ss_pred EEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCccccc
Q 043350 177 VRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGL 256 (1133)
Q Consensus 177 VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~ 256 (1133)
+.+||+.+.... .+..|...+...+|||||+.||.++ |+.|++|++.++.. . ..
T Consensus 94 ~~~~d~~~~~~~------------------~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~------~-~l 147 (740)
T 4a5s_A 94 YDIYDLNKRQLI------------------TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPS------Y-RI 147 (740)
T ss_dssp EEEEETTTTEEC------------------CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCC------E-EC
T ss_pred EEEEECCCCcEE------------------EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCce------E-EE
Confidence 779999873211 1223445789999999999999885 68999999976322 1 11
Q ss_pred ccccCCCC-----------------eEEEEEeeCCc-EEEEeCCCc-EEEEeCCCCceeeEeCCCCceEEEEeecceEEE
Q 043350 257 SWQAHRGP-----------------VLAMIFSSQGD-LWSGGEGGV-IKIWPWESIEKSLSLKPEEKHMAALLVERSFID 317 (1133)
Q Consensus 257 ~l~gH~~~-----------------V~sl~fsp~g~-L~Sgs~Dgt-I~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d 317 (1133)
+..++... ..++.|||||+ |+.++.|.+ +++|++...... ........ .+.
T Consensus 148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~---~~~~~~~~-------~~~ 217 (740)
T 4a5s_A 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE---SLQYPKTV-------RVP 217 (740)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST---TCSSCEEE-------EEE
T ss_pred cCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCC---CCCCCcce-------eec
Confidence 22233222 24589999999 888876655 888876320000 00000000 001
Q ss_pred ccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCC---Cc--eeEEEe------cCCcceeEEEeCCCCC
Q 043350 318 LRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARS---KE--LLKVFN------IEGHIENRVDTQSVQD 386 (1133)
Q Consensus 318 ~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~t---g~--~l~~~~------~h~~~v~~l~~sp~g~ 386 (1133)
.. ..+. . .....|.+||+.+ ++ ....+. ++...+..++|+|+++
T Consensus 218 yp-----------~~G~------~--------~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~ 272 (740)
T 4a5s_A 218 YP-----------KAGA------V--------NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQER 272 (740)
T ss_dssp CC-----------BTTS------C--------CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTE
T ss_pred CC-----------CCcC------c--------CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCe
Confidence 10 0000 0 1123678899988 73 223343 2667789999999998
Q ss_pred ccccccceEEEEeeCC----CCccccccccccceeeccCCceEEEEEecCCcccCCCCCE-----EEEEECCCC-eEE-E
Q 043350 387 QPVEDEMKVKFVSSNK----KEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRT-----EAMVLTADG-MIW-S 455 (1133)
Q Consensus 387 ~~~e~e~~v~lasgs~----Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V-----~sl~~spdg-~L~-s 455 (1133)
. ++.... +..|..++...... ......+..+.. ..+...+ ....|+||| .|+ .
T Consensus 273 ~---------~~~~~~r~~~~~~i~~~d~~tg~~-~~~~~~~~~l~~------~~~~~~v~~~~~~~p~fspDG~~l~~~ 336 (740)
T 4a5s_A 273 I---------SLQWLRRIQNYSVMDICDYDESSG-RWNCLVARQHIE------MSTTGWVGRFRPSEPHFTLDGNSFYKI 336 (740)
T ss_dssp E---------EEEEEESSTTEEEEEEEEEETTTT-EEEECGGGCEEE------ECSSSCSSSSSCCCCEECTTSSEEEEE
T ss_pred E---------EEEEeCCCCCEEEEEEEECCCCcc-ccceeEEEEeee------ccCCceEccCcCCCceEcCCCCEEEEE
Confidence 5 443321 22332222111000 000000000000 1222222 256799999 555 5
Q ss_pred Ee-cCC--eEEEEeCCCCeeEEEecCCcceeE-EecCCCEEEEEecC-----C--eEEEEeCCCCcce-eee----cccc
Q 043350 456 GC-TNG--LLVQWDGNGNRVSDILHHQCAVQC-FCTYGSRMYVGYVS-----G--YLQILDLDGNLTA-SWI----AHSS 519 (1133)
Q Consensus 456 gs-~DG--~I~vWd~~g~~l~~~~~h~~~V~~-fs~dg~~Lasgs~D-----G--~I~vwd~~g~~l~-~~~----~H~~ 519 (1133)
.+ .+| .|.+|+.++.....+......|.. +.+|++.|+..+.. + .|+..++.+.... .+. +...
T Consensus 337 ~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~ 416 (740)
T 4a5s_A 337 ISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERC 416 (740)
T ss_dssp EECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTB
T ss_pred EEcCCCceEEEEEECCCCceEecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCC
Confidence 54 344 588888877666666665666666 55777766544432 3 4555555543221 222 2345
Q ss_pred CeEEeeec--ccce-eeecc
Q 043350 520 PVLKLAVG--VDHI-YSLAA 536 (1133)
Q Consensus 520 ~V~~l~fs--~~~L-~S~s~ 536 (1133)
.+....|+ ++++ ++.+.
T Consensus 417 ~~~~~~~S~dg~~~~~~~s~ 436 (740)
T 4a5s_A 417 QYYSVSFSKEAKYYQLRCSG 436 (740)
T ss_dssp CBEEEEECTTSSEEEEEECS
T ss_pred ceEEEEECCCCCEEEEEeCC
Confidence 67788888 5543 34443
No 165
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.45 E-value=4.8e-13 Score=158.57 Aligned_cols=162 Identities=13% Similarity=-0.021 Sum_probs=117.8
Q ss_pred CCcceeEEEeCCCCCccccccceEEEE----eeCCCCcccccccccccee-eccCCceEEEEEecCCcccCCCCCEEEEE
Q 043350 372 EGHIENRVDTQSVQDQPVEDEMKVKFV----SSNKKEKPHGFLQRSRNAI-MGAADAVRRVATRGAGAFVDDTKRTEAMV 446 (1133)
Q Consensus 372 h~~~v~~l~~sp~g~~~~e~e~~v~la----sgs~Dg~i~~~~~~~~~~~-~~~~~~V~~v~~~p~g~~~~h~~~V~sl~ 446 (1133)
+...|++++|+|++.+ |+ +|+.|++|+.|+......- ......+..+. .+.+|...|.+++
T Consensus 91 ~~~~v~~l~~spdg~~---------lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~-----~~~~h~~~V~~v~ 156 (434)
T 2oit_A 91 MKFPIHHLALSCDNLT---------LSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHK-----LLKDAGGMVIDMK 156 (434)
T ss_dssp CSSCEEEEEECTTSCE---------EEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEE-----CCCSGGGSEEEEE
T ss_pred CCCcccEEEEcCCCCE---------EEEEEeccCCCceEEEEEccccccCCcCCcceeeeee-----ccCCCCCceEEEE
Confidence 4567999999999998 88 8999999986654321000 00001111111 1456788899999
Q ss_pred ECCC-C-eEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCCCcceeeecc----
Q 043350 447 LTAD-G-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGNLTASWIAH---- 517 (1133)
Q Consensus 447 ~spd-g-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~~l~~~~~H---- 517 (1133)
|+|+ + +|++++.||+|++||+ .+..+.....|...|.+ |+|+|++|++|+.||+|++||++++....+..|
T Consensus 157 ~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~ 236 (434)
T 2oit_A 157 WNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYE 236 (434)
T ss_dssp ECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCC
T ss_pred ECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccC
Confidence 9998 5 8999999999999999 45556666778889998 999999999999999999999987665555544
Q ss_pred ---ccCeEEeeec--ccceee-ecccCC------eeeccccC
Q 043350 518 ---SSPVLKLAVG--VDHIYS-LAAHGG------IRGWTFTS 547 (1133)
Q Consensus 518 ---~~~V~~l~fs--~~~L~S-~s~Dg~------I~lW~l~s 547 (1133)
...|.++.|+ +.++++ .+.||. +++|++..
T Consensus 237 ~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 237 SDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp TTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred CCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 3379999999 344433 233433 88999865
No 166
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.42 E-value=2.4e-11 Score=140.53 Aligned_cols=281 Identities=10% Similarity=0.047 Sum_probs=163.9
Q ss_pred EEEeCCCCEEEEEeC-CCe--EEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCC
Q 043350 218 LMVDCGNRLVWTGHK-DGK--IRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESI 293 (1133)
Q Consensus 218 la~spd~~~LaSgs~-Dg~--V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~ 293 (1133)
.+|+|||+.|+.++. +|. |.+||+.++ +......+|...+.+++|+|+|+ |+.++.++.|.+||+.+.
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g--------~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g 112 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ--------VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATL 112 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTC--------EEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCC--------ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 578999999998887 674 777888761 22333455666666789999999 999999999999999875
Q ss_pred ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCc-----------eEEE-ecCCCceeEeecC
Q 043350 294 EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHAR-----------ARVW-CAQPLSFSLWDAR 361 (1133)
Q Consensus 294 ~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~-----------i~vw-ss~d~~I~lWD~~ 361 (1133)
................ .+... +++...+....+.. ...+ ...+..|.+||+.
T Consensus 113 ~~~~~~~~~~~~~~~~-----~~~~~-----------~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 176 (388)
T 3pe7_A 113 EENVVYQVPAEWVGYG-----TWVAN-----------SDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK 176 (388)
T ss_dssp CEEEEEECCTTEEEEE-----EEEEC-----------TTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT
T ss_pred cceeeeechhhccccc-----ceeEC-----------CCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECC
Confidence 3322111111111000 01001 11111110000000 0000 0234678899999
Q ss_pred CCceeEEEecCCcceeEEEeCC-CCCccccccceEEEEeeCCCC------ccccccccccceeeccCCceEEEEEecCCc
Q 043350 362 SKELLKVFNIEGHIENRVDTQS-VQDQPVEDEMKVKFVSSNKKE------KPHGFLQRSRNAIMGAADAVRRVATRGAGA 434 (1133)
Q Consensus 362 tg~~l~~~~~h~~~v~~l~~sp-~g~~~~e~e~~v~lasgs~Dg------~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~ 434 (1133)
+++..... .+...+..+.|+| +++. |+..+..+ .+..++. ....+..
T Consensus 177 ~g~~~~l~-~~~~~~~~~~~sp~dg~~---------l~~~~~~~~~~~~~~l~~~d~--------~~~~~~~-------- 230 (388)
T 3pe7_A 177 TGESTVIL-QENQWLGHPIYRPYDDST---------VAFCHEGPHDLVDARMWLINE--------DGTNMRK-------- 230 (388)
T ss_dssp TCCEEEEE-EESSCEEEEEEETTEEEE---------EEEEECSCTTTSSCSEEEEET--------TSCCCEE--------
T ss_pred CCceEEee-cCCccccccEECCCCCCE---------EEEEEecCCCCCcceEEEEeC--------CCCceEE--------
Confidence 88755443 4556688999999 9987 76655432 1111110 0011111
Q ss_pred ccCCC--CCEEEEEECCCC-eEEEEe-cCC----eEEEEeCCC-C--eeEEEecCCcc-----eeEEecCCCEEEEE---
Q 043350 435 FVDDT--KRTEAMVLTADG-MIWSGC-TNG----LLVQWDGNG-N--RVSDILHHQCA-----VQCFCTYGSRMYVG--- 495 (1133)
Q Consensus 435 ~~~h~--~~V~sl~~spdg-~L~sgs-~DG----~I~vWd~~g-~--~l~~~~~h~~~-----V~~fs~dg~~Lasg--- 495 (1133)
+..+. ..+....|+||| .|+..+ .++ .|.+||+.+ + .+..+..+... -..|+|||++|+..
T Consensus 231 l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 310 (388)
T 3pe7_A 231 VKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQD 310 (388)
T ss_dssp SCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------
T ss_pred eeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeee
Confidence 11222 246677899999 565433 322 499999954 3 23333321111 11499999988854
Q ss_pred ------ecCCeEEEEeCCCCcceeeecccc-----------CeEEeeec--ccceeeec-ccCCeeeccccCC
Q 043350 496 ------YVSGYLQILDLDGNLTASWIAHSS-----------PVLKLAVG--VDHIYSLA-AHGGIRGWTFTSP 548 (1133)
Q Consensus 496 ------s~DG~I~vwd~~g~~l~~~~~H~~-----------~V~~l~fs--~~~L~S~s-~Dg~I~lW~l~s~ 548 (1133)
..+..|++||+.+..+..+..|.. .+.+++|+ +++|+..+ .+|...+|.+..+
T Consensus 311 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 311 DSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP 383 (388)
T ss_dssp ------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred ccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence 456799999999766667777776 57888998 66666554 5788888887654
No 167
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.41 E-value=1.3e-12 Score=165.11 Aligned_cols=281 Identities=8% Similarity=-0.021 Sum_probs=164.9
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCC---CeEEEEEeeCCc-EEEEeC---------CC
Q 043350 217 CLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRG---PVLAMIFSSQGD-LWSGGE---------GG 283 (1133)
Q Consensus 217 ~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~---~V~sl~fsp~g~-L~Sgs~---------Dg 283 (1133)
+++|+|+++++++ +.|++|++||+.++ +....+.+|.. .|.+++|||||+ |++++. |+
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g--------~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~ 90 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETG--------QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTA 90 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSC--------CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCC--------cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecce
Confidence 6789999966555 46999999999872 22223334433 489999999999 888876 79
Q ss_pred cEEEEeCCCCcee--eEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecC
Q 043350 284 VIKIWPWESIEKS--LSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDAR 361 (1133)
Q Consensus 284 tI~iWdl~~~~~~--l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~ 361 (1133)
+|++||+.++... ..+. .. +.. ...|.|++..++. .++.|++||+.
T Consensus 91 ~i~~~d~~~g~~~~~~~l~-~~--------------------~~~----------~~~SPDG~~la~~-~~~~i~~~~~~ 138 (719)
T 1z68_A 91 TYYIYDLSNGEFVRGNELP-RP--------------------IQY----------LCWSPVGSKLAYV-YQNNIYLKQRP 138 (719)
T ss_dssp EEEEEETTTTEECCSSCCC-SS--------------------BCC----------EEECSSTTCEEEE-ETTEEEEESST
T ss_pred EEEEEECCCCccccceecC-cc--------------------ccc----------ceECCCCCEEEEE-ECCeEEEEeCC
Confidence 9999999864220 0010 00 011 1122222222222 35688889888
Q ss_pred CCceeEEE-ecCCcce-----------------eEEEeCCCCCccccccceEEEEeeCCCC-cccccc----ccc----c
Q 043350 362 SKELLKVF-NIEGHIE-----------------NRVDTQSVQDQPVEDEMKVKFVSSNKKE-KPHGFL----QRS----R 414 (1133)
Q Consensus 362 tg~~l~~~-~~h~~~v-----------------~~l~~sp~g~~~~e~e~~v~lasgs~Dg-~i~~~~----~~~----~ 414 (1133)
+++..+.. .++...+ .+++||||++. |+.++.|. .+..+. ... .
T Consensus 139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~---------la~~~~d~~~~~~~~~~~~~~~~~~~~ 209 (719)
T 1z68_A 139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKF---------LAYAEFNDTDIPVIAYSYYGDEQYPRT 209 (719)
T ss_dssp TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSE---------EEEEEEECTTSCEEEEEECCSSSSCEE
T ss_pred CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCE---------EEEEEECCCCCceEEeeccCCCCCccc
Confidence 87765432 2222211 48999999999 88887653 222110 000 0
Q ss_pred cee----eccCCceEEE-EEecCC-------------cccCCCCCEEEEEECCCC-eEEEEecC----CeEEEEe----C
Q 043350 415 NAI----MGAADAVRRV-ATRGAG-------------AFVDDTKRTEAMVLTADG-MIWSGCTN----GLLVQWD----G 467 (1133)
Q Consensus 415 ~~~----~~~~~~V~~v-~~~p~g-------------~~~~h~~~V~sl~~spdg-~L~sgs~D----G~I~vWd----~ 467 (1133)
..+ .+.......+ .+...+ .+.++...+..++|+||+ .+++.... ..|.+|| .
T Consensus 210 ~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~ 289 (719)
T 1z68_A 210 INIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDW 289 (719)
T ss_dssp EEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSS
T ss_pred eeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCC
Confidence 000 0000010111 111111 123567778999999999 66654332 2488899 7
Q ss_pred C-CCeeEEE----ecCCccee-----E--EecCCCEEEE--EecCC--eEEEEeCCCCcceeeeccccCeEEeeec-ccc
Q 043350 468 N-GNRVSDI----LHHQCAVQ-----C--FCTYGSRMYV--GYVSG--YLQILDLDGNLTASWIAHSSPVLKLAVG-VDH 530 (1133)
Q Consensus 468 ~-g~~l~~~----~~h~~~V~-----~--fs~dg~~Las--gs~DG--~I~vwd~~g~~l~~~~~H~~~V~~l~fs-~~~ 530 (1133)
. +++...+ ..|...+. + |+|||+.|+. +..+| .|++||+.+.....+..+...|..+.+. ++.
T Consensus 290 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~d~~~ 369 (719)
T 1z68_A 290 QTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRVTQDS 369 (719)
T ss_dssp SSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEECSSE
T ss_pred CCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEEeCCE
Confidence 3 4443333 35666554 3 9999996654 44555 6777888765555666666667766555 666
Q ss_pred eeeeccc-----CCeeeccccC
Q 043350 531 IYSLAAH-----GGIRGWTFTS 547 (1133)
Q Consensus 531 L~S~s~D-----g~I~lW~l~s 547 (1133)
|+..+.+ +.+++|.+..
T Consensus 370 i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 370 LFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EEEEESCGGGCTTCBEEEEEEC
T ss_pred EEEEEecCCCCCceEEEEEEeC
Confidence 6655554 8899999875
No 168
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.38 E-value=1e-11 Score=157.53 Aligned_cols=294 Identities=9% Similarity=0.001 Sum_probs=171.6
Q ss_pred EEEEE-eCCCCeEEecCCcEEEeeCCCCCC--cCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCC--
Q 043350 159 LRNIA-CTDTQLWAGQECGVRFWNLEDSYE--PGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKD-- 233 (1133)
Q Consensus 159 V~~v~-s~dg~llas~Dg~VrvWdl~~~~~--~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~D-- 233 (1133)
..++. ++||+++++.|++|++||+.+... .+.+|. ...+......++|||||+.|+.++.+
T Consensus 19 ~~~~~w~~dg~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~Spdg~~l~~~~~~~~ 84 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQENNILVFNAEYGNSSVFLENST--------------FDEFGHSINDYSISPDGQFILLEYNYVK 84 (740)
T ss_dssp CCCEEECSSSEEEEEETTEEEEEETTTCCEEEEECTTT--------------TTTCCSCCCEEEECTTSSEEEEEEEEEE
T ss_pred ccccEECCCCcEEEEcCCcEEEEECCCCceEEEEechh--------------hhhhcccccceEECCCCCEEEEEECCee
Confidence 34567 899999995599999999987422 122222 00111123458899999999999887
Q ss_pred -------CeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCc-eeeEeCCCCc
Q 043350 234 -------GKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIE-KSLSLKPEEK 304 (1133)
Q Consensus 234 -------g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~-~~l~~~~~~~ 304 (1133)
+.+.+||+.+ .....+..|.+.+...+|||||+ |+.++ |+.|.+|++.+.. ..+.. ++.
T Consensus 85 ~~r~~~~~~~~~~d~~~---------~~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~--~g~ 152 (740)
T 4a5s_A 85 QWRHSYTASYDIYDLNK---------RQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITW--TGK 152 (740)
T ss_dssp CSSSCEEEEEEEEETTT---------TEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCS--CCB
T ss_pred eEEEccceEEEEEECCC---------CcEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcC--CCC
Confidence 5567999987 44556777888999999999999 88874 6899999986531 11111 000
Q ss_pred eEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCC---------cc
Q 043350 305 HMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEG---------HI 375 (1133)
Q Consensus 305 ~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~---------~~ 375 (1133)
....+.++. ..
T Consensus 153 ------------------------------------------------------------~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 153 ------------------------------------------------------------EDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp ------------------------------------------------------------TTTEEESBCCHHHHHHTSSS
T ss_pred ------------------------------------------------------------ccceecCcccccccchhcCC
Confidence 000111111 12
Q ss_pred eeEEEeCCCCCccccccceEEEEeeCCCCc-cccccc----cc------cce----eeccCCceEEE-EEecC----C--
Q 043350 376 ENRVDTQSVQDQPVEDEMKVKFVSSNKKEK-PHGFLQ----RS------RNA----IMGAADAVRRV-ATRGA----G-- 433 (1133)
Q Consensus 376 v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~-i~~~~~----~~------~~~----~~~~~~~V~~v-~~~p~----g-- 433 (1133)
...+.|||||+. |+.++.|.+ +..|.. .. ... ..+.......+ .+... +
T Consensus 173 ~~~~~wSpDg~~---------la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~ 243 (740)
T 4a5s_A 173 YSALWWSPNGTF---------LAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTN 243 (740)
T ss_dssp SBCEEECTTSSE---------EEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSC
T ss_pred CcceEECCCCCE---------EEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCc
Confidence 235788888887 777665544 321110 00 000 00111111011 01111 1
Q ss_pred ----------cccCCCCCEEEEEECCCC-eEEEEec----CCeEEEEeC-CCC----ee--EEE--ecCCccee------
Q 043350 434 ----------AFVDDTKRTEAMVLTADG-MIWSGCT----NGLLVQWDG-NGN----RV--SDI--LHHQCAVQ------ 483 (1133)
Q Consensus 434 ----------~~~~h~~~V~sl~~spdg-~L~sgs~----DG~I~vWd~-~g~----~l--~~~--~~h~~~V~------ 483 (1133)
.+.++...+..++|+||| .++.... +..|.+||. .|+ +. ..+ ..|...|.
T Consensus 244 ~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~ 323 (740)
T 4a5s_A 244 ATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSE 323 (740)
T ss_dssp CCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCC
T ss_pred ceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCC
Confidence 011366678999999999 5554432 347999998 455 22 222 44555544
Q ss_pred -EEecCCCEEE-EEec-C--CeEEEEeCCCCcceeeeccccCeEEee-ecccceeeec-c----cCCeeeccccC
Q 043350 484 -CFCTYGSRMY-VGYV-S--GYLQILDLDGNLTASWIAHSSPVLKLA-VGVDHIYSLA-A----HGGIRGWTFTS 547 (1133)
Q Consensus 484 -~fs~dg~~La-sgs~-D--G~I~vwd~~g~~l~~~~~H~~~V~~l~-fs~~~L~S~s-~----Dg~I~lW~l~s 547 (1133)
.|+|||+.|+ ..+. + ..|++||+.+.....+....-.|..+. ++++.|+..+ . .+...+|.+..
T Consensus 324 p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~ 398 (740)
T 4a5s_A 324 PHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL 398 (740)
T ss_dssp CEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEET
T ss_pred ceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEEC
Confidence 3999999877 6653 3 478889998766555555555565543 5555554443 3 24466776543
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.38 E-value=1.1e-11 Score=154.77 Aligned_cols=336 Identities=9% Similarity=-0.044 Sum_probs=191.7
Q ss_pred cccCCCCCEEEEe--cCCCeEEeccCCCCCCCCCCeeeeccCCCccc----cccceEEEEE-eCCCCe-EE-ecC--CcE
Q 043350 109 KPFQPMVEFIGSG--GGTGIFKVPSRAAVHPGRPPCLELRPHPLKET----QAGRFLRNIA-CTDTQL-WA-GQE--CGV 177 (1133)
Q Consensus 109 ~~~~p~g~~lasg--s~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~----~~g~~V~~v~-s~dg~l-la-s~D--g~V 177 (1133)
+.+++++-+++++ +.++..+||.... +.. ...+..|..... ..+....... +|||+. ++ +.+ ..|
T Consensus 29 ~~~s~~~~~~~~~~~~~~~~~~l~~~~~---~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l 104 (662)
T 3azo_A 29 VGAVGDEVWWVAPRPAEAGRATLVRRRA---DGA-EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRL 104 (662)
T ss_dssp EEEETTEEEEEEEETTTTTEEEEEEECT---TSC-EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCE
T ss_pred eEEcCCeEEEEecCcccCCcEEEEEECC---CCC-cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeE
Confidence 6667777777777 6788999998532 333 556666654100 0000112223 499998 77 554 456
Q ss_pred EEeeCC----CCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCC----------CeEEEEeCCC
Q 043350 178 RFWNLE----DSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKD----------GKIRSWKMDQ 243 (1133)
Q Consensus 178 rvWdl~----~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~D----------g~V~vWd~~~ 243 (1133)
.+|++. +....+.... ...|...+.+++|+|||+.|++++.| ..|++|++.+
T Consensus 105 ~~~~~~~~g~~~~~~l~~~~--------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 170 (662)
T 3azo_A 105 YAFEPDAPGGAVPRPLTPVS--------------AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDG 170 (662)
T ss_dssp EEECTTSTTCCCCEECSCCC--------------CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred EEEcCCCCCCCCCEeccCCc--------------cCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCC
Confidence 666654 2211111100 00144568899999999999999887 5899999876
Q ss_pred CCCCCCCCcccccccc-cCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCc
Q 043350 244 TLDDANNPFKEGLSWQ-AHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQ 321 (1133)
Q Consensus 244 ~~~~~~~~~~~~~~l~-gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~ 321 (1133)
.... .......+. .+...+.+++|+|||+ |+.++.++...-|
T Consensus 171 ~~~~---~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~--------------------------------- 214 (662)
T 3azo_A 171 SAAA---DRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPW--------------------------------- 214 (662)
T ss_dssp TTTT---CGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTT---------------------------------
T ss_pred Cccc---cCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCC---------------------------------
Confidence 1100 001122344 5567888999999999 8877755321000
Q ss_pred eeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecC-CC---ceeEEEecCCcceeEEEeCCCCCccccccceEEE
Q 043350 322 VTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDAR-SK---ELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKF 397 (1133)
Q Consensus 322 ~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~-tg---~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~l 397 (1133)
....|.+||+. ++ +.......+...+..+.|+|++++ +
T Consensus 215 -----------------------------~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l---------~ 256 (662)
T 3azo_A 215 -----------------------------EGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL---------I 256 (662)
T ss_dssp -----------------------------TCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE---------E
T ss_pred -----------------------------CCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE---------E
Confidence 11234455555 34 333334445667889999999998 8
Q ss_pred EeeCCCCccc--cccc--cccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEE--eCCCC
Q 043350 398 VSSNKKEKPH--GFLQ--RSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQW--DGNGN 470 (1133)
Q Consensus 398 asgs~Dg~i~--~~~~--~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vW--d~~g~ 470 (1133)
++++.++..+ .++. .....+..+...+....++ ..+..+++++++ .++++.. +.+++| |..+.
T Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~---------~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~ 326 (662)
T 3azo_A 257 VATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWT---------PGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG 326 (662)
T ss_dssp EEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCS---------TTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT
T ss_pred EEECCCCCeEEEEEECCCCceeecccccccccCcccc---------ccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC
Confidence 8888887443 2221 1111111111111000011 113457888989 8888888 999999 66666
Q ss_pred eeEEEecCCcceeEE-ecCCCEEE--EEecCC--eEEEEeCCCCcceee-eccccCeEEeeec--ccceeeecccCCeee
Q 043350 471 RVSDILHHQCAVQCF-CTYGSRMY--VGYVSG--YLQILDLDGNLTASW-IAHSSPVLKLAVG--VDHIYSLAAHGGIRG 542 (1133)
Q Consensus 471 ~l~~~~~h~~~V~~f-s~dg~~La--sgs~DG--~I~vwd~~g~~l~~~-~~H~~~V~~l~fs--~~~L~S~s~Dg~I~l 542 (1133)
.+..+..|...+..+ +++++.++ +++.+. .|++||+.+.....+ ..|...+....+. ....+....+..|..
T Consensus 327 ~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~ 406 (662)
T 3azo_A 327 ELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHA 406 (662)
T ss_dssp EEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEE
T ss_pred cEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEE
Confidence 788888887777776 88887544 334443 566667665444444 3454444444444 233333333445666
Q ss_pred cccc
Q 043350 543 WTFT 546 (1133)
Q Consensus 543 W~l~ 546 (1133)
|-..
T Consensus 407 ~~~~ 410 (662)
T 3azo_A 407 HIYP 410 (662)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 6543
No 170
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.38 E-value=1.2e-11 Score=140.39 Aligned_cols=225 Identities=10% Similarity=0.007 Sum_probs=144.5
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCC-CCeEEEEEeeCCc-E-EEEeCCCcEEEEeCCCCc
Q 043350 218 LMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHR-GPVLAMIFSSQGD-L-WSGGEGGVIKIWPWESIE 294 (1133)
Q Consensus 218 la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~-~~V~sl~fsp~g~-L-~Sgs~DgtI~iWdl~~~~ 294 (1133)
+++++++.++++++.+++|++||+..+ +....+..+. ..+..++|+|+|+ + ++++.++.|.+||+.+..
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~ 76 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASD--------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK 76 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTT--------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCC--------cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc
Confidence 356668899999999999999999761 2333343332 2578999999998 4 555678889988875421
Q ss_pred eeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecC--
Q 043350 295 KSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIE-- 372 (1133)
Q Consensus 295 ~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h-- 372 (1133)
.+..+...
T Consensus 77 ----------------------------------------------------------------------~~~~~~~~~~ 86 (349)
T 1jmx_B 77 ----------------------------------------------------------------------NTFHANLSSV 86 (349)
T ss_dssp ----------------------------------------------------------------------EEEEEESCCS
T ss_pred ----------------------------------------------------------------------EEEEEEcccc
Confidence 11111110
Q ss_pred ----CcceeEEEeCCCCCccccccceEEEEeeCCC------------CccccccccccceeeccCCceEEEEEecCCccc
Q 043350 373 ----GHIENRVDTQSVQDQPVEDEMKVKFVSSNKK------------EKPHGFLQRSRNAIMGAADAVRRVATRGAGAFV 436 (1133)
Q Consensus 373 ----~~~v~~l~~sp~g~~~~e~e~~v~lasgs~D------------g~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~ 436 (1133)
...+..++|+|++++ +++++.+ +.+..|+....... ..+.. .
T Consensus 87 ~~~~~~~~~~~~~spdg~~---------l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~---------~ 144 (349)
T 1jmx_B 87 PGEVGRSMYSFAISPDGKE---------VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA----KPVRT---------F 144 (349)
T ss_dssp TTEEEECSSCEEECTTSSE---------EEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB----CCSEE---------E
T ss_pred cccccccccceEECCCCCE---------EEEEcccccccccccccCCCeEEEEECCCcccc----ceeee---------c
Confidence 123567889999988 7777754 55543332210000 00000 0
Q ss_pred CCCCCEEEEEECCCCeEEEEecCCeEEEEeC-CCCeeEEEecCC------------------------------------
Q 043350 437 DDTKRTEAMVLTADGMIWSGCTNGLLVQWDG-NGNRVSDILHHQ------------------------------------ 479 (1133)
Q Consensus 437 ~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~-~g~~l~~~~~h~------------------------------------ 479 (1133)
.+...+.+++++|+|.+++++ +.|.+||. +++.+..+..+.
T Consensus 145 ~~~~~~~~~~~s~dg~l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 222 (349)
T 1jmx_B 145 PMPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD 222 (349)
T ss_dssp ECCSSCCCEEECTTSCEEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred cCCCcccceeECCCCcEEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCC
Confidence 122346778899999544443 34999998 566666554331
Q ss_pred --------------------------------cceeE--Eec-CCCEEEEEecCCeEEEEeCCC-CcceeeeccccCeEE
Q 043350 480 --------------------------------CAVQC--FCT-YGSRMYVGYVSGYLQILDLDG-NLTASWIAHSSPVLK 523 (1133)
Q Consensus 480 --------------------------------~~V~~--fs~-dg~~Lasgs~DG~I~vwd~~g-~~l~~~~~H~~~V~~ 523 (1133)
..+.+ ++| +|++|+++ ++.|++||+.. +.+..+.. ...+.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~ 299 (349)
T 1jmx_B 223 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYC 299 (349)
T ss_dssp ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCE
T ss_pred cCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccc
Confidence 01112 668 99999988 89999999974 44455543 345678
Q ss_pred eeec--ccceeeecccCCeeeccccC
Q 043350 524 LAVG--VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 524 l~fs--~~~L~S~s~Dg~I~lW~l~s 547 (1133)
++|+ +++|++++.++.|.+||+.+
T Consensus 300 ~~~s~dg~~l~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 300 VAFDKKGDKLYLGGTFNDLAVFNPDT 325 (349)
T ss_dssp EEECSSSSCEEEESBSSEEEEEETTT
T ss_pred eEECCCCCEEEEecCCCeEEEEeccc
Confidence 9998 78888888899999999765
No 171
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.37 E-value=4.4e-11 Score=138.38 Aligned_cols=147 Identities=8% Similarity=-0.108 Sum_probs=97.4
Q ss_pred cccCCCCCEEEEecC-CCe--EEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeC
Q 043350 109 KPFQPMVEFIGSGGG-TGI--FKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNL 182 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~-dg~--irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl 182 (1133)
+.|+|||++|+.++. +|. |.+|+..+ ++. .....+|.. .+..+. +|||+.|+ +.++.|++||+
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~---g~~-~~lt~~~~~-------~~~~~~~spdg~~l~~~~~~~~l~~~d~ 109 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNT---QVA-TQLTEGRGD-------NTFGGFLSPDDDALFYVKDGRNLMRVDL 109 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTT---CEE-EECCCSSCB-------CSSSCEECTTSSEEEEEETTTEEEEEET
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCC---Cce-EEeeeCCCC-------CccceEEcCCCCEEEEEeCCCeEEEEEC
Confidence 568999999999887 674 66777762 322 333334433 333445 99999888 66789999999
Q ss_pred CCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEE--EEeCCCCEEEEE----------------------eCCCeEEE
Q 043350 183 EDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCL--MVDCGNRLVWTG----------------------HKDGKIRS 238 (1133)
Q Consensus 183 ~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~l--a~spd~~~LaSg----------------------s~Dg~V~v 238 (1133)
.+.... .+...+...+... .+++++.+++.. ..+..|.+
T Consensus 110 ~~g~~~-----------------~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (388)
T 3pe7_A 110 ATLEEN-----------------VVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR 172 (388)
T ss_dssp TTCCEE-----------------EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred CCCcce-----------------eeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence 874221 1122232233223 347899988743 24478999
Q ss_pred EeCCCCCCCCCCCcccccccccCCCCeEEEEEee-CCc-EEEEeCC------CcEEEEeCCC
Q 043350 239 WKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSS-QGD-LWSGGEG------GVIKIWPWES 292 (1133)
Q Consensus 239 Wd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp-~g~-L~Sgs~D------gtI~iWdl~~ 292 (1133)
||+.+ .....+..+...+..++|+| +|+ |+.++.+ ..|.+||..+
T Consensus 173 ~d~~~---------g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~ 225 (388)
T 3pe7_A 173 VDLKT---------GESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG 225 (388)
T ss_dssp EETTT---------CCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS
T ss_pred EECCC---------CceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC
Confidence 99887 33445556777899999999 999 8777654 3677777754
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.37 E-value=2.5e-10 Score=126.36 Aligned_cols=237 Identities=11% Similarity=0.115 Sum_probs=161.6
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCccccccc------ccCCCCeEEEEEe-eCCcEEEEeC-
Q 043350 210 ANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSW------QAHRGPVLAMIFS-SQGDLWSGGE- 281 (1133)
Q Consensus 210 ~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l------~gH~~~V~sl~fs-p~g~L~Sgs~- 281 (1133)
+++..+.+++++++++++++...++.|.+|+.++ +.+..+ .+|...+.++++. ++|.|+.+..
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g---------~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~ 97 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG---------RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS 97 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS---------CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCC---------cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC
Confidence 4566789999999999888888999999999875 222222 2355678899994 6677444442
Q ss_pred -CCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeec
Q 043350 282 -GGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDA 360 (1133)
Q Consensus 282 -DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~ 360 (1133)
++.|.+|+...
T Consensus 98 ~~~~i~~~d~~g-------------------------------------------------------------------- 109 (286)
T 1q7f_A 98 PTHQIQIYNQYG-------------------------------------------------------------------- 109 (286)
T ss_dssp GGCEEEEECTTS--------------------------------------------------------------------
T ss_pred CCCEEEEECCCC--------------------------------------------------------------------
Confidence 77788877421
Q ss_pred CCCceeEEEe-cCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCC
Q 043350 361 RSKELLKVFN-IEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDT 439 (1133)
Q Consensus 361 ~tg~~l~~~~-~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~ 439 (1133)
+.+..+. .+...+..+++++++.+ +++...++.|..++... ..+..+ . ...+.
T Consensus 110 ---~~~~~~~~~~~~~~~~i~~~~~g~l---------~v~~~~~~~i~~~~~~g--------~~~~~~--~----~~~~~ 163 (286)
T 1q7f_A 110 ---QFVRKFGATILQHPRGVTVDNKGRI---------IVVECKVMRVIIFDQNG--------NVLHKF--G----CSKHL 163 (286)
T ss_dssp ---CEEEEECTTTCSCEEEEEECTTSCE---------EEEETTTTEEEEECTTS--------CEEEEE--E----CTTTC
T ss_pred ---cEEEEecCccCCCceEEEEeCCCCE---------EEEECCCCEEEEEcCCC--------CEEEEe--C----CCCcc
Confidence 1111111 12234567888888877 77777777775333210 011111 1 01233
Q ss_pred CCEEEEEECCCC-eEEEEecCCeEEEEeCCCCeeEEEecC--CcceeE--EecCCCEEEEEecCC-eEEEEeCCCCccee
Q 043350 440 KRTEAMVLTADG-MIWSGCTNGLLVQWDGNGNRVSDILHH--QCAVQC--FCTYGSRMYVGYVSG-YLQILDLDGNLTAS 513 (1133)
Q Consensus 440 ~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g~~l~~~~~h--~~~V~~--fs~dg~~Lasgs~DG-~I~vwd~~g~~l~~ 513 (1133)
..+..++++++| .+++...++.|++|+.+++.+..+..+ ...+.+ ++++|+++++...++ .|++||.+++.+..
T Consensus 164 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~ 243 (286)
T 1q7f_A 164 EFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISA 243 (286)
T ss_dssp SSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEE
T ss_pred CCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEE
Confidence 457889999999 666667799999999998888777553 234544 889998888887776 99999998888877
Q ss_pred eecccc--CeEEeeec--ccceeeecccCCeeeccccCCCC
Q 043350 514 WIAHSS--PVLKLAVG--VDHIYSLAAHGGIRGWTFTSPSP 550 (1133)
Q Consensus 514 ~~~H~~--~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s~~~ 550 (1133)
+..+.. .+.+++++ ++.+++ +.|+.|++|++....+
T Consensus 244 ~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 244 LESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp EEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred EcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccccc
Confidence 776653 47789998 555555 6799999999765433
No 173
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.34 E-value=1.2e-10 Score=133.73 Aligned_cols=271 Identities=10% Similarity=0.071 Sum_probs=157.3
Q ss_pred CCEEEEEe----CCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCC----CcEEEEeCCCC-
Q 043350 224 NRLVWTGH----KDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEG----GVIKIWPWESI- 293 (1133)
Q Consensus 224 ~~~LaSgs----~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~D----gtI~iWdl~~~- 293 (1133)
..+++.|+ .++.|.+|+++.... ....+... |...+..++|+|+|+ |++++.+ +.|.+|+++..
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g----~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~ 86 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETG----ESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK 86 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTC----CEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCC----CEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC
Confidence 34556664 467899998864111 11222233 677888999999999 9888886 79999987642
Q ss_pred --ceeeEe-CCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCc-eEEEecCCCceeEeecCCCceeE--
Q 043350 294 --EKSLSL-KPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHAR-ARVWCAQPLSFSLWDARSKELLK-- 367 (1133)
Q Consensus 294 --~~~l~~-~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~-i~vwss~d~~I~lWD~~tg~~l~-- 367 (1133)
...+.. ...+. ....++. +++ +.+.+..++.|.+||+.....+.
T Consensus 87 g~~~~~~~~~~~~~-----------------------------~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~ 136 (361)
T 3scy_A 87 GTLHLLNTQKTMGA-----------------------------DPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPA 136 (361)
T ss_dssp TEEEEEEEEECSSS-----------------------------CEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSC
T ss_pred CcEEEeeEeccCCC-----------------------------CcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCccc
Confidence 111100 00000 0011111 222 22222467889999987443322
Q ss_pred --EEe--cC--------CcceeEEEeCCCCCccccccceEEE-EeeCCCCccccccccccceeeccCCc-eEE----EEE
Q 043350 368 --VFN--IE--------GHIENRVDTQSVQDQPVEDEMKVKF-VSSNKKEKPHGFLQRSRNAIMGAADA-VRR----VAT 429 (1133)
Q Consensus 368 --~~~--~h--------~~~v~~l~~sp~g~~~~e~e~~v~l-asgs~Dg~i~~~~~~~~~~~~~~~~~-V~~----v~~ 429 (1133)
.+. +. ...+.+++|+|++++ + +++..++.+..|......... ... +.. ...
T Consensus 137 ~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~---------l~~~~~~~~~v~v~~~~~~~~~~--~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 137 SDVIEFKGSGPDKERQTMPHLHCVRITPDGKY---------LLADDLGTDQIHKFNINPNANAD--NKEKFLTKGTPEAF 205 (361)
T ss_dssp SEEEECCCCCSCTTTCSSCCEEEEEECTTSSE---------EEEEETTTTEEEEEEECTTCCTT--TCCCCEEEEEEEEE
T ss_pred ceeEEccCCCCCccccCCCcceEEEECCCCCE---------EEEEeCCCCEEEEEEEcCCCCcc--cccceeecccccce
Confidence 111 11 122467999999986 4 445556766533211100000 000 000 011
Q ss_pred ecCCcccCCCCCEEEEEECCCC-eEEEEe-cCCeEEEEeCC-CCe--eEEEec---CCcceeE--EecCCCEEEEEec--
Q 043350 430 RGAGAFVDDTKRTEAMVLTADG-MIWSGC-TNGLLVQWDGN-GNR--VSDILH---HQCAVQC--FCTYGSRMYVGYV-- 497 (1133)
Q Consensus 430 ~p~g~~~~h~~~V~sl~~spdg-~L~sgs-~DG~I~vWd~~-g~~--l~~~~~---h~~~V~~--fs~dg~~Lasgs~-- 497 (1133)
. .........++|+|+| ++++++ .++.|.+|++. +.. +..+.. +.....+ |+|||++|+++..
T Consensus 206 ~-----~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~ 280 (361)
T 3scy_A 206 K-----VAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK 280 (361)
T ss_dssp E-----CCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS
T ss_pred e-----cCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC
Confidence 1 1233456789999999 777766 68999999994 422 333332 2223334 9999999977765
Q ss_pred CCeEEEEeCC---CC--cceeeeccccCeEEeeec--ccceeeec-ccCCeeeccccC
Q 043350 498 SGYLQILDLD---GN--LTASWIAHSSPVLKLAVG--VDHIYSLA-AHGGIRGWTFTS 547 (1133)
Q Consensus 498 DG~I~vwd~~---g~--~l~~~~~H~~~V~~l~fs--~~~L~S~s-~Dg~I~lW~l~s 547 (1133)
++.|.+|++. ++ .+..+.. ...+.+++|+ +++|++++ .++.|.+|.+..
T Consensus 281 ~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 281 ADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp SCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred CCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 4899999985 33 3333444 5578899999 77787776 678899987653
No 174
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.34 E-value=1.5e-11 Score=133.77 Aligned_cols=133 Identities=17% Similarity=0.165 Sum_probs=81.6
Q ss_pred ccceEEEEEEcCCCCCC-----chhhhhhhcCCCCCccEEEEeeeecccccchhhhhhhhhhhcCCCCcchhhHHHHHhh
Q 043350 571 DVRILVGTWNVGQGRAS-----HESLLSWLGSVSSDVGIVAVGLQEVEMGAGFLAMSAAKETVGLEGSAIGQWWQDTIGK 645 (1133)
Q Consensus 571 ~lrI~v~TWNv~~~~~~-----~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 645 (1133)
.-.+.+.|||+++.... ...+.++|.. .+||| |+|||+.- .+.+.|.+
T Consensus 7 ~~~l~v~swNi~g~~~~~~~~r~~~i~~~i~~--~~pDI--i~LQEv~~-----------------------~~~~~l~~ 59 (256)
T 4gz1_A 7 SSTISFITWNIDGLDGCNLPERARGVCSCLAL--YSPDV--VFLQEVIP-----------------------PYCAYLKK 59 (256)
T ss_dssp GGEEEEEEEECCTTCCTTHHHHHHHHHHHHHH--HCCSE--EEEEEECH-----------------------HHHHHHHH
T ss_pred CCcEEEEEEEcCCCcCcCHHHHHHHHHHHHHH--cCCCE--EEEEcCCH-----------------------HHHHHHHh
Confidence 34677889999865443 1346677763 45785 78999841 12334444
Q ss_pred hcCCCCcEEEEeeeecceEEEEEEEecccccccCceeecccccccccccccceeEEEEEEEcCeEEEEEecccccChHHH
Q 043350 646 ALDEGTTFERMGSRQLAGLLISFWVRKNLRTHVGDVDAAAVPCGFGRAIGNKGGVGLRIRVYDRTICFVNCHLAAHLEAV 725 (1133)
Q Consensus 646 ~l~~~~~y~~v~~~~l~g~~l~v~~~~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~~r~~~~~~~~~fvn~Hlaa~~~~~ 725 (1133)
.+. .+.|..... .+-...++.++.....+ .... ..+.+....++.+.+.+.+.+..|.++|+||.++...-
T Consensus 60 ~~~-~~~~~~~~~---~~~~~~~l~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~ 130 (256)
T 4gz1_A 60 RAA-SYTIITGNE---EGYFTAILLKKGRVKFK---SQEI--IPFPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREHS 130 (256)
T ss_dssp HCT-TEEEEESCS---SSSEEEEEEETTTEEEE---EEEE--EECTTCSSCCEEEEEEEEETTEEEEEEECBCCCSGGGH
T ss_pred hcc-ccceeeccc---cCCceEEEEEeccccce---eccc--ccCCcccccceEEEEEEEeCCEEEEEEeecccccccch
Confidence 442 122221121 22233455555432211 1111 12233445778999999999999999999999998887
Q ss_pred HHHHHHHHHHHHhC
Q 043350 726 NRRNADYDHIYRNM 739 (1133)
Q Consensus 726 ~~Rn~d~~~i~~~~ 739 (1133)
+.|.+++..|++.+
T Consensus 131 ~~~~~q~~~~~~~l 144 (256)
T 4gz1_A 131 AERIRQLKTVLGKM 144 (256)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHhhhh
Confidence 88888888888765
No 175
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.27 E-value=2.7e-10 Score=131.65 Aligned_cols=288 Identities=8% Similarity=-0.019 Sum_probs=160.5
Q ss_pred eEEEEEeCCCCEEEEEeCC---CeEEEEeCCCCCCCCCCCcccccccccCCCC-eEEEEEeeCCc-EEEEeCCCcEEEEe
Q 043350 215 TMCLMVDCGNRLVWTGHKD---GKIRSWKMDQTLDDANNPFKEGLSWQAHRGP-VLAMIFSSQGD-LWSGGEGGVIKIWP 289 (1133)
Q Consensus 215 V~~la~spd~~~LaSgs~D---g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~-V~sl~fsp~g~-L~Sgs~DgtI~iWd 289 (1133)
+.+++|+|+|++|+..... ..|.+|++.+ .....+..+... ...+.|+|+|+ |+.++.++.|.+|+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~---------~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d 108 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLET---------QQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVD 108 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTT---------TEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCC---------CcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEE
Confidence 5567899999998777543 3688888876 222333333333 33478999999 99999999999999
Q ss_pred CCCCcee-eEeCCCCceEEEEeecceEEEccCcee-----eeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCC
Q 043350 290 WESIEKS-LSLKPEEKHMAALLVERSFIDLRAQVT-----VNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSK 363 (1133)
Q Consensus 290 l~~~~~~-l~~~~~~~~l~s~~~d~s~~d~~~~~~-----v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg 363 (1133)
+.+.... +...+.+ +.. ++..+.+..... .......+.+...++... .....+..|.+||+.++
T Consensus 109 ~~~~~~~~~~~~~~~-~~~----~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~-----~~~~~~~~l~~~d~~~g 178 (396)
T 3c5m_A 109 LETLEEQVIYTVDEE-WKG----YGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEF-----YHTNPTCRLIKVDIETG 178 (396)
T ss_dssp TTTCCEEEEEECCTT-EEE----EEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH-----HHTCCCEEEEEEETTTC
T ss_pred CCCCCcEEEEecccc-cCC----CCCEEEeccCCccccccccccccCCCCcceeeeee-----ccCCCcceEEEEECCCC
Confidence 9874322 2211211 100 111111110000 000111111111111000 00024567888999888
Q ss_pred ceeEEEecCCcceeEEEeCC-CCCccccccceEEEEeeCCCCc------cccccccccceeeccCCceEEEEEecCCccc
Q 043350 364 ELLKVFNIEGHIENRVDTQS-VQDQPVEDEMKVKFVSSNKKEK------PHGFLQRSRNAIMGAADAVRRVATRGAGAFV 436 (1133)
Q Consensus 364 ~~l~~~~~h~~~v~~l~~sp-~g~~~~e~e~~v~lasgs~Dg~------i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~ 436 (1133)
+..... .+...+..+.|+| ++.. |+..+.++. |..++.. ...+.. +.
T Consensus 179 ~~~~~~-~~~~~~~~~~~sp~dg~~---------l~~~~~~~~~~~~~~l~~~d~~--------~~~~~~--------l~ 232 (396)
T 3c5m_A 179 ELEVIH-QDTAWLGHPIYRPFDDST---------VGFCHEGPHDLVDARMWLVNED--------GSNVRK--------IK 232 (396)
T ss_dssp CEEEEE-EESSCEEEEEEETTEEEE---------EEEEECSCSSSCSCCCEEEETT--------SCCCEE--------SS
T ss_pred cEEeec-cCCcccccceECCCCCCE---------EEEEecCCCCCCCceEEEEECC--------CCceeE--------ee
Confidence 766554 4456688999999 7765 555443221 2111110 000000 11
Q ss_pred CC--CCCEEEEEECCCC-eEEEEecC-----CeEEEEeCCCCeeEEEecCCcceeEEec-CCCEEEEEe-----------
Q 043350 437 DD--TKRTEAMVLTADG-MIWSGCTN-----GLLVQWDGNGNRVSDILHHQCAVQCFCT-YGSRMYVGY----------- 496 (1133)
Q Consensus 437 ~h--~~~V~sl~~spdg-~L~sgs~D-----G~I~vWd~~g~~l~~~~~h~~~V~~fs~-dg~~Lasgs----------- 496 (1133)
.+ ...+..+.|+|+| .|+.++.+ +.|.+||+.+.....+.........|+| ||++|++++
T Consensus 233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~s~~dg~~l~~~~~~~p~~~~~~~ 312 (396)
T 3c5m_A 233 EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCSHLMSNFDGSLMVGDGCDAPVDVADAD 312 (396)
T ss_dssp CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEEEEEECSSSSEEEEEECCC--------
T ss_pred ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCCCCccCCCCceEEEecCCcceeecccc
Confidence 11 2246778899999 67666544 4599999954322222221111145999 999888764
Q ss_pred -----cCCeEEEEeCCCCcceeeecccc-----------CeEEeeec--ccceeeec-ccCCeeeccccC
Q 043350 497 -----VSGYLQILDLDGNLTASWIAHSS-----------PVLKLAVG--VDHIYSLA-AHGGIRGWTFTS 547 (1133)
Q Consensus 497 -----~DG~I~vwd~~g~~l~~~~~H~~-----------~V~~l~fs--~~~L~S~s-~Dg~I~lW~l~s 547 (1133)
.++.|++||+.+..+..+..|.. .+..++|+ +++|+.++ .++...+|.+..
T Consensus 313 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~ 382 (396)
T 3c5m_A 313 SYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADV 382 (396)
T ss_dssp --CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred ccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEE
Confidence 34789999998655556666655 25667787 76776665 466777777654
No 176
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.23 E-value=6.7e-10 Score=128.02 Aligned_cols=251 Identities=10% Similarity=0.084 Sum_probs=145.1
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCC-CCCCCCCCCcccccccccCCCCeEEEEEeeCCc-E--EEEe-------
Q 043350 212 TSPTMCLMVDCGNRLVWTGHKDGKIRSWKMD-QTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-L--WSGG------- 280 (1133)
Q Consensus 212 ~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~-~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L--~Sgs------- 280 (1133)
...+..++|+|++++|++++.+ .|.+|++. .+. .........+ +.+.+++|+|+|+ | ++++
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~------~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~ 110 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTE------IVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVY 110 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTE------EEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEE
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCC------EEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceec
Confidence 3467889999999999999988 99999986 311 0111111111 2356689999998 2 3443
Q ss_pred ------CCCcEEEEeCCC-Cce--eeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecC
Q 043350 281 ------EGGVIKIWPWES-IEK--SLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQ 351 (1133)
Q Consensus 281 ------~DgtI~iWdl~~-~~~--~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~ 351 (1133)
.+|++.+|++.. +.. .+.. +..........+...+++... ++++ ..
T Consensus 111 ~~~~~~~~g~v~v~~~~~~g~~~~~~~~----------------~~~~~~~~~~~~~~spdG~~l-~~~~--------~~ 165 (365)
T 1jof_A 111 ANPFYKFAGYGNVFSVSETGKLEKNVQN----------------YEYQENTGIHGMVFDPTETYL-YSAD--------LT 165 (365)
T ss_dssp EEEESSSCCEEEEEEECTTCCEEEEEEE----------------EECCTTCCEEEEEECTTSSEE-EEEE--------TT
T ss_pred cceeecCCceEEEEccCCCCcCcceEee----------------EEeCCCCcceEEEECCCCCEE-EEEc--------CC
Confidence 689999999863 211 1110 000000011111111333222 2222 34
Q ss_pred CCceeEeecC-CCcee--EEEec--CCcceeEEEeCCCCCccccccceEEEEeeCC-CCccccccccccceeeccCCce-
Q 043350 352 PLSFSLWDAR-SKELL--KVFNI--EGHIENRVDTQSVQDQPVEDEMKVKFVSSNK-KEKPHGFLQRSRNAIMGAADAV- 424 (1133)
Q Consensus 352 d~~I~lWD~~-tg~~l--~~~~~--h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~-Dg~i~~~~~~~~~~~~~~~~~V- 424 (1133)
++.|.+||+. +++.. ..+.. +...+..++|+|++++ +++++. ++++..|.... ..+..
T Consensus 166 ~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~---------l~v~~~~~~~v~v~~~~~------~~g~~~ 230 (365)
T 1jof_A 166 ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNY---------LYALMEAGNRICEYVIDP------ATHMPV 230 (365)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSE---------EEEEETTTTEEEEEEECT------TTCCEE
T ss_pred CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCE---------EEEEECCCCeEEEEEEeC------CCCcEE
Confidence 6789999998 77654 33432 3566889999999988 766554 56665322110 00111
Q ss_pred ---EEEEEecCCcccCCCC------CEEEEE-ECCCC-eEEEEecC-C-----eEEEEeCC--CCeeE---EEecCCcce
Q 043350 425 ---RRVATRGAGAFVDDTK------RTEAMV-LTADG-MIWSGCTN-G-----LLVQWDGN--GNRVS---DILHHQCAV 482 (1133)
Q Consensus 425 ---~~v~~~p~g~~~~h~~------~V~sl~-~spdg-~L~sgs~D-G-----~I~vWd~~--g~~l~---~~~~h~~~V 482 (1133)
..+...|.+ +.++.. .+..++ ++||| +|+++..+ . .|.+|+++ |+... .+..+...+
T Consensus 231 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~ 309 (365)
T 1jof_A 231 YTHHSFPLIPPG-IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGG 309 (365)
T ss_dssp EEEEEEESSCTT-CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCT
T ss_pred EccceEEcCCCC-cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCc
Confidence 111111111 122232 588899 99999 77766543 2 89999983 44332 133333333
Q ss_pred eE--Eec---CCCEEEEEecC-CeEEEEeCCCCcc
Q 043350 483 QC--FCT---YGSRMYVGYVS-GYLQILDLDGNLT 511 (1133)
Q Consensus 483 ~~--fs~---dg~~Lasgs~D-G~I~vwd~~g~~l 511 (1133)
.. |+| ||++|++++.+ ++|.+|+++.+.+
T Consensus 310 ~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~l 344 (365)
T 1jof_A 310 HSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp TCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred ccceecCCCcCCCEEEEEEcCCCeEEEEEEchhhC
Confidence 33 999 89999999864 9999999976533
No 177
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.22 E-value=8.4e-10 Score=127.24 Aligned_cols=297 Identities=9% Similarity=-0.042 Sum_probs=166.6
Q ss_pred CCCCEEEEec------CCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE-e-----------c
Q 043350 113 PMVEFIGSGG------GTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA-G-----------Q 173 (1133)
Q Consensus 113 p~g~~lasgs------~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla-s-----------~ 173 (1133)
|++.++.... .|+.+.+||..+ ++. +..+..+.. + .++ ++||+++. + .
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t---~~~-~~~i~~g~~-------p--~i~~spdg~~lyv~~~~~~~~~~g~~ 79 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTN---GKF-LGMVPTAFN-------G--HVQVSNDGKKIYTMTTYHERITRGKR 79 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTT---CCE-EEEEECCEE-------E--EEEECTTSSEEEEEEEEETTSSSSCE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCC---CeE-EEEecCCCC-------C--ceEECCCCCEEEEEEecccccccCCC
Confidence 4666666543 478999999764 444 556655433 4 777 99998877 3 2
Q ss_pred CCcEEEeeCCCCCCc--CcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeC--CCeEEEEeCCCCCCCCC
Q 043350 174 ECGVRFWNLEDSYEP--GAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHK--DGKIRSWKMDQTLDDAN 249 (1133)
Q Consensus 174 Dg~VrvWdl~~~~~~--~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~--Dg~V~vWd~~~~~~~~~ 249 (1133)
+++|.+||..+.... +.... . ...+......++++|+|++|+++.. +++|.+||+...
T Consensus 80 ~~~v~v~d~~t~~~~~~i~~~~------------~-~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~----- 141 (361)
T 2oiz_A 80 SDVVEVWDADKLTFEKEISLPP------------K-RVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG----- 141 (361)
T ss_dssp EEEEEEEETTTCCEEEEEEECT------------T-BCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT-----
T ss_pred CCEEEEEECcCCcEEEEEEcCc------------c-ccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC-----
Confidence 567999998753211 10000 0 0001234577899999999998874 689999999861
Q ss_pred CCcccccc-cccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceee-EeCCCCceEEEEeecceEEEccCceeee
Q 043350 250 NPFKEGLS-WQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSL-SLKPEEKHMAALLVERSFIDLRAQVTVN 325 (1133)
Q Consensus 250 ~~~~~~~~-l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l-~~~~~~~~l~s~~~d~s~~d~~~~~~v~ 325 (1133)
+.+.. +. + .....+.+.|++. +++.+.||.+.+|++...-+.. ..+. . ..++.....
T Consensus 142 ---~~~~~~i~-~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~--~---------~~~~~~~~~--- 202 (361)
T 2oiz_A 142 ---DYVEDVTA-A-AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRS--K---------QMFSVKDDP--- 202 (361)
T ss_dssp ---EEEEEEGG-G-TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEEC--C---------CCSCTTTSC---
T ss_pred ---cEEEEEec-C-CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccc--c---------ceEcCCCCc---
Confidence 22222 22 2 1223466788874 8899999999999875411111 0000 0 011111000
Q ss_pred ccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCcee--EEEecCCcceeEEEeCCCCCccccccceEEEEeeCCC
Q 043350 326 GACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELL--KVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKK 403 (1133)
Q Consensus 326 ~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l--~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~D 403 (1133)
.....+.++...++.+.++.+.++|+..+... ..+.........+
T Consensus 203 ---------~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~------------------------ 249 (361)
T 2oiz_A 203 ---------IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAK------------------------ 249 (361)
T ss_dssp ---------BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHT------------------------
T ss_pred ---------eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccc------------------------
Confidence 00000111222223334556666666433211 1111000000000
Q ss_pred CccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEec-----------CCeEEEEeC-CCC
Q 043350 404 EKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCT-----------NGLLVQWDG-NGN 470 (1133)
Q Consensus 404 g~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~-----------DG~I~vWd~-~g~ 470 (1133)
.+.|.|. ..+++++++ .++++.. .+.|.+||. +++
T Consensus 250 ------------------------~~~p~g~--------~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~ 297 (361)
T 2oiz_A 250 ------------------------NWVPGGY--------NLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ 297 (361)
T ss_dssp ------------------------TCEECCS--------SCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE
T ss_pred ------------------------ccccCCe--------eEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc
Confidence 0000000 013456666 5555432 358999999 668
Q ss_pred eeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCC-C--CcceeeeccccCeEEeeec
Q 043350 471 RVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLD-G--NLTASWIAHSSPVLKLAVG 527 (1133)
Q Consensus 471 ~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~-g--~~l~~~~~H~~~V~~l~fs 527 (1133)
.+.++..+. +.+ |+|||++|++++. ++|.+||.. + +++..+..+......++++
T Consensus 298 ~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~ 356 (361)
T 2oiz_A 298 RVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFH 356 (361)
T ss_dssp EEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEEC
T ss_pred EEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEec
Confidence 888888877 454 9999999999887 999999987 5 5566666666666777776
No 178
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.21 E-value=2.7e-09 Score=118.01 Aligned_cols=235 Identities=12% Similarity=0.076 Sum_probs=151.4
Q ss_pred eEEEEE-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEe-CCCCEEEEEeC-
Q 043350 158 FLRNIA-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVD-CGNRLVWTGHK- 232 (1133)
Q Consensus 158 ~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~s-pd~~~LaSgs~- 232 (1133)
...+++ .+++.+++ ..++.|.+||.++......... -....+...+.+++++ +++.++++...
T Consensus 31 ~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~------------~~~~~~~~~p~~i~~~~~~g~l~v~~~~~ 98 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGEC------------GKRDSQLLYPNRVAVVRNSGDIIVTERSP 98 (286)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCB------------SSSTTCBSSEEEEEEETTTTEEEEEECGG
T ss_pred CCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEeccc------------CCCcccccCceEEEEEcCCCeEEEEcCCC
Confidence 577788 88888888 5688999999775211100000 0011344568899995 67776666643
Q ss_pred CCeEEEEeCCCCCCCCCCCcccccccc-cCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEe
Q 043350 233 DGKIRSWKMDQTLDDANNPFKEGLSWQ-AHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALL 310 (1133)
Q Consensus 233 Dg~V~vWd~~~~~~~~~~~~~~~~~l~-gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~ 310 (1133)
++.|.+|+.++ +.+..+. .+...+.+|+++++|+ +++.+.++.|.+|+....
T Consensus 99 ~~~i~~~d~~g---------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~----------------- 152 (286)
T 1q7f_A 99 THQIQIYNQYG---------QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN----------------- 152 (286)
T ss_dssp GCEEEEECTTS---------CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-----------------
T ss_pred CCEEEEECCCC---------cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-----------------
Confidence 89999999655 3333332 3456789999999999 677677888988875321
Q ss_pred ecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEe--cCCcceeEEEeCCCCCcc
Q 043350 311 VERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFN--IEGHIENRVDTQSVQDQP 388 (1133)
Q Consensus 311 ~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~--~h~~~v~~l~~sp~g~~~ 388 (1133)
.+..+. .+...+..+++++++.+
T Consensus 153 ------------------------------------------------------~~~~~~~~~~~~~p~~i~~~~~g~l- 177 (286)
T 1q7f_A 153 ------------------------------------------------------VLHKFGCSKHLEFPNGVVVNDKQEI- 177 (286)
T ss_dssp ------------------------------------------------------EEEEEECTTTCSSEEEEEECSSSEE-
T ss_pred ------------------------------------------------------EEEEeCCCCccCCcEEEEECCCCCE-
Confidence 001110 12234567888888877
Q ss_pred ccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCC-eEEEEe
Q 043350 389 VEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNG-LLVQWD 466 (1133)
Q Consensus 389 ~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG-~I~vWd 466 (1133)
+++.+.++.|+.++... ..+.. +.. .++...+..++++++| .+++...++ .|.+|+
T Consensus 178 --------~v~~~~~~~i~~~~~~g--------~~~~~--~~~----~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~ 235 (286)
T 1q7f_A 178 --------FISDNRAHCVKVFNYEG--------QYLRQ--IGG----EGITNYPIGVGINSNGEILIADNHNNFNLTIFT 235 (286)
T ss_dssp --------EEEEGGGTEEEEEETTC--------CEEEE--ESC----TTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred --------EEEECCCCEEEEEcCCC--------CEEEE--Ecc----CCccCCCcEEEECCCCCEEEEeCCCCEEEEEEC
Confidence 77777777775333211 01111 110 1223567889999999 666666665 999999
Q ss_pred CCCCeeEEEecCCcc--eeE--EecCCCEEEEEecCCeEEEEeCCC
Q 043350 467 GNGNRVSDILHHQCA--VQC--FCTYGSRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 467 ~~g~~l~~~~~h~~~--V~~--fs~dg~~Lasgs~DG~I~vwd~~g 508 (1133)
.+++.+..+..+... +.+ ++++|+++++ +.|++|++|+...
T Consensus 236 ~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 236 QDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp TTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred CCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 999888888765432 334 8999986666 6799999999753
No 179
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.21 E-value=2.3e-09 Score=123.56 Aligned_cols=280 Identities=11% Similarity=0.069 Sum_probs=157.7
Q ss_pred EEEEEeCC--CeEEEEeCCCCCCCCCCCccccccc-ccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCC-CCceeeEeC
Q 043350 226 LVWTGHKD--GKIRSWKMDQTLDDANNPFKEGLSW-QAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWE-SIEKSLSLK 300 (1133)
Q Consensus 226 ~LaSgs~D--g~V~vWd~~~~~~~~~~~~~~~~~l-~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~-~~~~~l~~~ 300 (1133)
.|+.|+.. +.|.+|+++.... ....+... .++...+..++|+|+|+ |++++.+ .|.+|++. ++.....
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g----~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~-- 76 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKL----TCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHE-- 76 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTT----EEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEE--
T ss_pred EEEEEEccCCCcEEEEEEECCCC----CEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEe--
Confidence 35566553 5688887653111 01111111 12344688999999999 9898888 99999985 3211000
Q ss_pred CCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecC-CceEEEec----CCCceeEeecC-CCceeEEEec---
Q 043350 301 PEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDH-ARARVWCA----QPLSFSLWDAR-SKELLKVFNI--- 371 (1133)
Q Consensus 301 ~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d-~~i~vwss----~d~~I~lWD~~-tg~~l~~~~~--- 371 (1133)
...........+...+++...++++.+ +....+.. .++.+.+|++. ++++...+..
T Consensus 77 ---------------~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~ 141 (365)
T 1jof_A 77 ---------------ASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEY 141 (365)
T ss_dssp ---------------EEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEEC
T ss_pred ---------------eEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEe
Confidence 000000001112222233221333331 11111111 57889999997 5766554442
Q ss_pred -CCcceeEEEeCCCCCccccccceEEEEeeC-CCCccccccccccceeeccCCceEEEE-EecCCcccCCCCCEEEEEEC
Q 043350 372 -EGHIENRVDTQSVQDQPVEDEMKVKFVSSN-KKEKPHGFLQRSRNAIMGAADAVRRVA-TRGAGAFVDDTKRTEAMVLT 448 (1133)
Q Consensus 372 -h~~~v~~l~~sp~g~~~~e~e~~v~lasgs-~Dg~i~~~~~~~~~~~~~~~~~V~~v~-~~p~g~~~~h~~~V~sl~~s 448 (1133)
+...+..++|+|++++ ++++. .++.|..|+... .+....+. +. +..+...+..++|+
T Consensus 142 ~~~~~~~~~~~spdG~~---------l~~~~~~~~~v~~~~~~~-------~g~~~~~~~~~----~~~~g~~p~~~~~s 201 (365)
T 1jof_A 142 QENTGIHGMVFDPTETY---------LYSADLTANKLWTHRKLA-------SGEVELVGSVD----APDPGDHPRWVAMH 201 (365)
T ss_dssp CTTCCEEEEEECTTSSE---------EEEEETTTTEEEEEEECT-------TSCEEEEEEEE----CSSTTCCEEEEEEC
T ss_pred CCCCcceEEEECCCCCE---------EEEEcCCCCEEEEEEECC-------CCCEEEeeeEe----cCCCCCCCCEeEEC
Confidence 4556889999999987 66654 355665333210 11111111 11 11234568889999
Q ss_pred CCC-eEEEEec-CCeEEEEeCC---CCee---EEEec-------CCc------ce--eE-EecCCCEEEEEecCC-----
Q 043350 449 ADG-MIWSGCT-NGLLVQWDGN---GNRV---SDILH-------HQC------AV--QC-FCTYGSRMYVGYVSG----- 499 (1133)
Q Consensus 449 pdg-~L~sgs~-DG~I~vWd~~---g~~l---~~~~~-------h~~------~V--~~-fs~dg~~Lasgs~DG----- 499 (1133)
|+| +|++++. ++.|.+|+.+ |+.. ..+.. |.. .+ .+ |+|||++|++++.+.
T Consensus 202 pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~ 281 (365)
T 1jof_A 202 PTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQ 281 (365)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSC
T ss_pred CCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCC
Confidence 999 7777764 7899999763 4432 22221 121 23 34 889999998876432
Q ss_pred -eEEEEeCC--CCcce---eeeccccCeEEeeec-----ccceeeeccc-CCeeeccccC
Q 043350 500 -YLQILDLD--GNLTA---SWIAHSSPVLKLAVG-----VDHIYSLAAH-GGIRGWTFTS 547 (1133)
Q Consensus 500 -~I~vwd~~--g~~l~---~~~~H~~~V~~l~fs-----~~~L~S~s~D-g~I~lW~l~s 547 (1133)
+|.+|++. +++.. ....+...+..++|+ +++|++++.+ +.|.+|++..
T Consensus 282 ~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 282 GYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp CEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred CeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 89999985 44332 133355556667765 5788888764 8999999764
No 180
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.20 E-value=1.1e-09 Score=124.25 Aligned_cols=247 Identities=10% Similarity=-0.034 Sum_probs=155.9
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCC------------------------CeEEEEeCCCCCCCCCCCccccccc-ccCCCC
Q 043350 210 ANTSPTMCLMVDCGNRLVWTGHKD------------------------GKIRSWKMDQTLDDANNPFKEGLSW-QAHRGP 264 (1133)
Q Consensus 210 ~h~s~V~~la~spd~~~LaSgs~D------------------------g~V~vWd~~~~~~~~~~~~~~~~~l-~gH~~~ 264 (1133)
..++.+.+|+++++|+++++.+.+ ++|.+||...+ +....+ .++-..
T Consensus 21 ~~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g--------~~~~~~~~~~~~~ 92 (329)
T 3fvz_A 21 LLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA--------EILQSSGKNLFYL 92 (329)
T ss_dssp CCCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC--------CEEEEECTTTCSS
T ss_pred eecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC--------eEEeccCCCccCC
Confidence 456789999999999999998887 47999998741 222222 244567
Q ss_pred eEEEEEeeCCc-EEEEeCCCcEEEEeCCCCc-eeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEec-
Q 043350 265 VLAMIFSSQGD-LWSGGEGGVIKIWPWESIE-KSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSD- 341 (1133)
Q Consensus 265 V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~-~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~- 341 (1133)
..+|+++++|+ +++.+.++.|++|+..... ....+...+.. .... .....+.. +.+..
T Consensus 93 p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~---------g~~~---------~~~~~P~~-ia~~~~ 153 (329)
T 3fvz_A 93 PHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP---------GSDQ---------NHFCQPTD-VAVEPS 153 (329)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBC---------CCST---------TCCSSEEE-EEECTT
T ss_pred ceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCC---------CCCc---------cccCCCcE-EEEeCC
Confidence 89999999999 8888889999999987532 11111110000 0000 00001111 11222
Q ss_pred CCceEEEec-CCCceeEeecCCCceeEEEecCC----------cceeEEEeCCC-CCccccccceEEEEeeCCCCccccc
Q 043350 342 HARARVWCA-QPLSFSLWDARSKELLKVFNIEG----------HIENRVDTQSV-QDQPVEDEMKVKFVSSNKKEKPHGF 409 (1133)
Q Consensus 342 d~~i~vwss-~d~~I~lWD~~tg~~l~~~~~h~----------~~v~~l~~sp~-g~~~~e~e~~v~lasgs~Dg~i~~~ 409 (1133)
++.+.+-.+ .++.|.+|| .+|+.+..+.... .....++++|+ +.+ +++...+++|+.|
T Consensus 154 ~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l---------~v~d~~~~~I~~~ 223 (329)
T 3fvz_A 154 TGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQL---------CVADRENGRIQCF 223 (329)
T ss_dssp TCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEE---------EEEETTTTEEEEE
T ss_pred CCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEE---------EEEECCCCEEEEE
Confidence 344444444 578888998 6788887775332 23679999998 766 7788888888644
Q ss_pred ccc---ccceeeccCCceEEEEEecCCcccCCCCCEEEEEECC------CC-eEEEEecCCeEEEEeC-CCCeeEEEe--
Q 043350 410 LQR---SRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTA------DG-MIWSGCTNGLLVQWDG-NGNRVSDIL-- 476 (1133)
Q Consensus 410 ~~~---~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~sp------dg-~L~sgs~DG~I~vWd~-~g~~l~~~~-- 476 (1133)
+.. ....+. ...+...+.+++++| +| .+++...+..|++|+. +|+.+..+.
T Consensus 224 ~~~~G~~~~~~~----------------~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~ 287 (329)
T 3fvz_A 224 KTDTKEFVREIK----------------HASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV 287 (329)
T ss_dssp ETTTCCEEEEEC----------------CTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS
T ss_pred ECCCCcEEEEEe----------------ccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC
Confidence 322 111111 012334455666666 33 2223344568999997 778888774
Q ss_pred -cCCcceeE--EecCCCEEEEEecCCeEEEEeCCCC
Q 043350 477 -HHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGN 509 (1133)
Q Consensus 477 -~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~ 509 (1133)
.+...... ++++|..+++...+++|++|+++++
T Consensus 288 ~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 288 RKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp SSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred CCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 45555555 8999988888889999999998764
No 181
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.19 E-value=1.9e-10 Score=125.02 Aligned_cols=134 Identities=16% Similarity=0.115 Sum_probs=79.8
Q ss_pred cccceEEEEEEcCCCCCCc-----hhhhhhhcCCCCCccEEEEeeeecccccchhhhhhhhhhhcCCCCcchhhHHHHHh
Q 043350 570 DDVRILVGTWNVGQGRASH-----ESLLSWLGSVSSDVGIVAVGLQEVEMGAGFLAMSAAKETVGLEGSAIGQWWQDTIG 644 (1133)
Q Consensus 570 ~~lrI~v~TWNv~~~~~~~-----~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 644 (1133)
....+.|.|||+++..... +.+.+||.. .+||| |+|||+.-. +.+.|.
T Consensus 10 ~~~~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~~--~~pDI--i~LQEv~~~-----------------------~~~~l~ 62 (256)
T 4fva_A 10 KGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKN--VNPDI--LFLQEVVDR-----------------------DLAPID 62 (256)
T ss_dssp TTCEEEEEEEECCTTCCTTHHHHHHHHHHHHHH--HCCSE--EEEEEECST-----------------------TCHHHH
T ss_pred CCCEEEEEEEecCCCCCcCHHHHHHHHHHHHHH--cCCCE--EEEEecChh-----------------------HhHHHH
Confidence 3457888999998654321 346677763 46785 689998421 112233
Q ss_pred hhcCCCCcEEEEeeeecceEEEEEEEecccccccCceeecccccccccccccceeEEEEEEEcCeEEEEEecccccChHH
Q 043350 645 KALDEGTTFERMGSRQLAGLLISFWVRKNLRTHVGDVDAAAVPCGFGRAIGNKGGVGLRIRVYDRTICFVNCHLAAHLEA 724 (1133)
Q Consensus 645 ~~l~~~~~y~~v~~~~l~g~~l~v~~~~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~~r~~~~~~~~~fvn~Hlaa~~~~ 724 (1133)
+.++ . |.......-.+-..+++.++.+.. +....+ .+......++.+.+.+.+.+..|.++|+||.+....
T Consensus 63 ~~~~-~--~~~~~~~~~~~~g~~il~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~ 133 (256)
T 4fva_A 63 KLQS-L--YKIYYSNKGCQYYTAILVSKMFDV----EKHDVI--HFQNSGMYRTLQILEGSIGGLKVFLLNTHLESTREH 133 (256)
T ss_dssp GGGG-T--EEEEESSTTSSSEEEEEEETTCEE----EEEEEE--ECTTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGG
T ss_pred HhcC-C--ceEeecCCCCCcceEEEEeecccc----eecccc--cCCCCcccceeEEEEEEeCCeEEEEEEecCCCCCcc
Confidence 3331 1 222222233333445666654421 121111 222233567888999999999999999999998877
Q ss_pred HHHHHHHHHHHHHhC
Q 043350 725 VNRRNADYDHIYRNM 739 (1133)
Q Consensus 725 ~~~Rn~d~~~i~~~~ 739 (1133)
-.+|...+..+...+
T Consensus 134 ~~~~~~q~~~~~~~~ 148 (256)
T 4fva_A 134 RPQRCAQFGFCMDKV 148 (256)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 777777777776543
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.19 E-value=5e-09 Score=116.61 Aligned_cols=247 Identities=12% Similarity=0.081 Sum_probs=150.2
Q ss_pred cCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEE
Q 043350 210 ANTSPTMCLMVDCGNR-LVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKI 287 (1133)
Q Consensus 210 ~h~s~V~~la~spd~~-~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~i 287 (1133)
.+..-..+++|+|+++ +++++..++.|..|+..+ . ...+..+...+.+++++++|+ +++...++.|.+
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~---------~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDG---------Q-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTS---------C-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCC---------C-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 4455678999999998 888999999999999987 3 445566778899999999999 665556789999
Q ss_pred EeCCCCc-eeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecC--Cce-------EEEecCCCceeE
Q 043350 288 WPWESIE-KSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDH--ARA-------RVWCAQPLSFSL 357 (1133)
Q Consensus 288 Wdl~~~~-~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d--~~i-------~vwss~d~~I~l 357 (1133)
||..++. ..+.....+.. . .....+.. +++..+.++.. +.. .......+.|..
T Consensus 95 ~d~~~g~~~~~~~~~~~~~------------~---~~~~~i~~--d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~ 157 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKK------------L---NSPNDVCL--APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFR 157 (296)
T ss_dssp ECSTTCCEEEEECEETTEE------------C---CCCCCEEE--CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEE
T ss_pred EcCCCCcEEEEeeccCCCC------------C---CCCCCEEE--CCCCCEEEECCccccccccccccccccCCCcEEEE
Confidence 9985532 11110000000 0 00011111 11222222210 000 000001234444
Q ss_pred eecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCce---EEEEEecCCc
Q 043350 358 WDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAV---RRVATRGAGA 434 (1133)
Q Consensus 358 WD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V---~~v~~~p~g~ 434 (1133)
+|.. ++ +..+..+......++|+|+++. +++.+.++.|..++... .+.+ ..+ +.
T Consensus 158 ~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~---------lv~~~~~~~i~~~~~~~-------~g~~~~~~~~-~~---- 214 (296)
T 3e5z_A 158 LAPD-GT-LSAPIRDRVKPNGLAFLPSGNL---------LVSDTGDNATHRYCLNA-------RGETEYQGVH-FT---- 214 (296)
T ss_dssp ECTT-SC-EEEEECCCSSEEEEEECTTSCE---------EEEETTTTEEEEEEECS-------SSCEEEEEEE-EC----
T ss_pred ECCC-CC-EEEeecCCCCCccEEECCCCCE---------EEEeCCCCeEEEEEECC-------CCcCcCCCeE-ee----
Confidence 4444 44 3444555566789999999998 87777777776433210 0111 111 11
Q ss_pred ccCCCCCEEEEEECCCCeEEEEecCCeEEEEeCCCCeeEEEecCCcceeE--E-ecCCCEEEEEecCCeEEEEeCCCCcc
Q 043350 435 FVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGNGNRVSDILHHQCAVQC--F-CTYGSRMYVGYVSGYLQILDLDGNLT 511 (1133)
Q Consensus 435 ~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~g~~l~~~~~h~~~V~~--f-s~dg~~Lasgs~DG~I~vwd~~g~~l 511 (1133)
.+...+..++++++|.|+.+. ++.|.+|+.+|+.+..+..+.. +.+ | .++++.|++++.++ +.-++.+.+.+
T Consensus 215 --~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 215 --VEPGKTDGLRVDAGGLIWASA-GDGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp --CSSSCCCSEEEBTTSCEEEEE-TTEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred --CCCCCCCeEEECCCCCEEEEc-CCeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence 122334568899999666666 8899999999999888887766 655 7 58899999998764 55556655433
No 183
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.16 E-value=3.9e-09 Score=131.65 Aligned_cols=294 Identities=7% Similarity=-0.064 Sum_probs=167.7
Q ss_pred eccCCCCeEEEEEeCCCCEEEEE--eCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeE---------EEEEe--eCC
Q 043350 208 ESANTSPTMCLMVDCGNRLVWTG--HKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVL---------AMIFS--SQG 274 (1133)
Q Consensus 208 ~~~h~s~V~~la~spd~~~LaSg--s~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~---------sl~fs--p~g 274 (1133)
...|...+..++|+++.-++++. +.++...||....+ .....+..|...|. +..|+ |||
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg 90 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD--------GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAG 90 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT--------SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSS
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC--------CCcceeCCCCccccccccccCCccceeeeecCC
Confidence 44577889999999887666776 56889999996321 22344555655555 66666 898
Q ss_pred c-EEEEeC--CCcEEEEeCC----CCceeeEeCC---CCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCc
Q 043350 275 D-LWSGGE--GGVIKIWPWE----SIEKSLSLKP---EEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHAR 344 (1133)
Q Consensus 275 ~-L~Sgs~--DgtI~iWdl~----~~~~~l~~~~---~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~ 344 (1133)
+ ++..+. +..|.+|++. .....+...+ .... +..+...+++..++..+.+..
T Consensus 91 ~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~------------------~~~~~~spDg~~l~~~~~~~~ 152 (662)
T 3azo_A 91 GPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLR------------------WADPVLLPERGEVWCMAEEFT 152 (662)
T ss_dssp SCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEE------------------EEEEEEETTTTEEEEEEEEEC
T ss_pred CeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCcc------------------ccCcEECCCCCEEEEEEeccc
Confidence 8 244443 4556666665 2222222111 1111 111111133333333332100
Q ss_pred eEEEecCCCceeEeecCC------CceeEEEe-cCCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccccccccee
Q 043350 345 ARVWCAQPLSFSLWDARS------KELLKVFN-IEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAI 417 (1133)
Q Consensus 345 i~vwss~d~~I~lWD~~t------g~~l~~~~-~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~ 417 (1133)
..--......|.+||+.+ ++. ..+. .+...+..++||||++. |+.++.++....|....+..+
T Consensus 153 ~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~---------la~~~~~~~~~~~~~~~i~~~ 222 (662)
T 3azo_A 153 GEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQ---------AVWLAWDHPRMPWEGTELKTA 222 (662)
T ss_dssp SSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSE---------EEEEEECTTCCTTTCEEEEEE
T ss_pred CCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCE---------EEEEECCCCCCCCCCcEEEEE
Confidence 000000114788899887 554 4454 55567888999999998 887776553322222212221
Q ss_pred ecc-CC---ceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCC--eEEEEeCCCCeeEEEecCCcce--------
Q 043350 418 MGA-AD---AVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNG--LLVQWDGNGNRVSDILHHQCAV-------- 482 (1133)
Q Consensus 418 ~~~-~~---~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG--~I~vWd~~g~~l~~~~~h~~~V-------- 482 (1133)
.-. .+ ....+. .++...+..+.|+||| .++++..+| .|.+|+..+..+..+..+...+
T Consensus 223 d~~~~g~~~~~~~l~-------~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~ 295 (662)
T 3azo_A 223 RVTEDGRFADTRTLL-------GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPG 295 (662)
T ss_dssp EECTTSCEEEEEEEE-------EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTT
T ss_pred EECCCCcccccEEeC-------CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCcccccc
Confidence 111 11 112221 2345678899999999 788888888 6666777443333333322222
Q ss_pred -e--EEecCCCEEEEEecCCeEEEE--eCCCCcceeeeccccCeEEe-eeccc-ceee-ecccCCeeeccc
Q 043350 483 -Q--CFCTYGSRMYVGYVSGYLQIL--DLDGNLTASWIAHSSPVLKL-AVGVD-HIYS-LAAHGGIRGWTF 545 (1133)
Q Consensus 483 -~--~fs~dg~~Lasgs~DG~I~vw--d~~g~~l~~~~~H~~~V~~l-~fs~~-~L~S-~s~Dg~I~lW~l 545 (1133)
. +|+++++++++++. +.++|| |+.+..+..+..|...+..+ +++++ .+++ .+.+....+|.+
T Consensus 296 ~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 296 MRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp CCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred CceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEE
Confidence 2 37789999999998 999999 66655577788888888888 77744 3333 344544555544
No 184
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.15 E-value=4.3e-10 Score=120.78 Aligned_cols=131 Identities=14% Similarity=0.160 Sum_probs=76.0
Q ss_pred ceEEEEEEcCCCCCCc-----hhhhhhhcCCCCCccEEEEeeeecccccchhhhhhhhhhhcCCCCcchhhHHHHHhhhc
Q 043350 573 RILVGTWNVGQGRASH-----ESLLSWLGSVSSDVGIVAVGLQEVEMGAGFLAMSAAKETVGLEGSAIGQWWQDTIGKAL 647 (1133)
Q Consensus 573 rI~v~TWNv~~~~~~~-----~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l 647 (1133)
++.|.|||+++..... +.+.++|.. .+||| |+|||+.- .+...+.+.+
T Consensus 3 ~l~v~t~Ni~g~~~~~~~~r~~~i~~~i~~--~~pDI--i~LQEv~~-----------------------~~~~~l~~~~ 55 (250)
T 4f1h_A 3 KLSIISWNVDGLDTLNLADRARGLCSYLAL--YTPDV--VFLQELIP-----------------------AYVQYLKKRA 55 (250)
T ss_dssp CEEEEEEECCTTCCTTHHHHHHHHHHHHHH--HCCSE--EEEEEECH-----------------------HHHHHHHHHC
T ss_pred eEEEEEEEeCCCCCcCHHHHHHHHHHHHHH--cCCCE--EEEEeCCH-----------------------HHHHHHHHhc
Confidence 5677899998654432 346777763 45785 67999841 1223444444
Q ss_pred CCCCcEEEEeeeecceEEEEEEEecccccccCceeecccccccccccccceeEEEEEEEcCeEEEEEecccccChHHHHH
Q 043350 648 DEGTTFERMGSRQLAGLLISFWVRKNLRTHVGDVDAAAVPCGFGRAIGNKGGVGLRIRVYDRTICFVNCHLAAHLEAVNR 727 (1133)
Q Consensus 648 ~~~~~y~~v~~~~l~g~~l~v~~~~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~~r~~~~~~~~~fvn~Hlaa~~~~~~~ 727 (1133)
.. +.|.........| .++.+++-.+. ++...+. +.......+.+.+++.+.+..+.++|+||.+....-+.
T Consensus 56 ~~-~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~hl~~~~~~~~~ 126 (250)
T 4f1h_A 56 VS-YLFFEGSDDGYFT---GIMLRKSRVKF---LESEIIC--FPTTQMMRNLLIAQVTFSGQKLYLMTSHLESCKNQSQE 126 (250)
T ss_dssp TT-EEEEESCSSSSEE---EEEEETTTCEE---EEEEEEE--CTTCSSCCEEEEEEEEETTEEEEEEECBCCCSGGGHHH
T ss_pred cC-ceeecccccccCc---eeEEeeccccc---eeccccc--ccCccccceEEEEEEecCCcEEEEeccccccccccHHH
Confidence 22 1121111112222 22333332221 1111111 11223345778888889999999999999999888888
Q ss_pred HHHHHHHHHHhC
Q 043350 728 RNADYDHIYRNM 739 (1133)
Q Consensus 728 Rn~d~~~i~~~~ 739 (1133)
|.+.+..|++.+
T Consensus 127 r~~q~~~~~~~l 138 (250)
T 4f1h_A 127 RTKQLRVVLQKI 138 (250)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888898888765
No 185
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.13 E-value=4.6e-10 Score=129.08 Aligned_cols=135 Identities=16% Similarity=0.107 Sum_probs=84.5
Q ss_pred ccccceEEEEEEcCCCCCC-----chhhhhhhcCCCCCccEEEEeeeecccccchhhhhhhhhhhcCCCCcchhhHHHHH
Q 043350 569 RDDVRILVGTWNVGQGRAS-----HESLLSWLGSVSSDVGIVAVGLQEVEMGAGFLAMSAAKETVGLEGSAIGQWWQDTI 643 (1133)
Q Consensus 569 ~~~lrI~v~TWNv~~~~~~-----~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 643 (1133)
....++.|.||||+|.... ...+.+||.. .+||| |+|||+.-. +...|
T Consensus 115 ~~~~~lkVlSWNI~Gl~~~~~~~R~~~I~~~I~~--~~PDI--V~LQEv~~~-----------------------~~~~l 167 (362)
T 4gew_A 115 LKGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKN--VNPDI--LFLQEVVDR-----------------------DLAPI 167 (362)
T ss_dssp TTTCEEEEEEEECCTTCCTTHHHHHHHHHHHHHH--HCCSE--EEEEEECST-----------------------TCHHH
T ss_pred CCCCeEEEEEEEeCCCCCcCHHHHHHHHHHHHHH--cCCCE--EEEEcCChh-----------------------HhHHH
Confidence 4467788999999875432 1346788864 46785 689998421 11223
Q ss_pred hhhcCCCCcEEEEeeeecceEEEEEEEecccccccCceeecccccccccccccceeEEEEEEEcCeEEEEEecccccChH
Q 043350 644 GKALDEGTTFERMGSRQLAGLLISFWVRKNLRTHVGDVDAAAVPCGFGRAIGNKGGVGLRIRVYDRTICFVNCHLAAHLE 723 (1133)
Q Consensus 644 ~~~l~~~~~y~~v~~~~l~g~~l~v~~~~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~~r~~~~~~~~~fvn~Hlaa~~~ 723 (1133)
.+.++ .|..+...+-.+-.+++|.|+.+. .+....+. +.+.....+++.+++.+.+..|+++|+||.+...
T Consensus 168 ~~~~~---~y~~~~~~~~~~~G~aIlsk~~i~----~~~~~~~~--~~~~~~~r~~l~~~i~~~g~~l~v~ntHL~s~~~ 238 (362)
T 4gew_A 168 DKLQS---LYKIYYSNKGCQYYTAILVSKMFD----VEKHDVIH--FQNSGMYRTLQILEGSIGGLKVFLLNTHLESTRE 238 (362)
T ss_dssp HGGGG---TEEEEESSTTSSSEEEEEEETTEE----EEEEEEEE--CTTCSSCCEEEEEEEEETTEEEEEEEEECCCSGG
T ss_pred HHhcC---CceEEeCCCCCCceEEEEEeccCc----cccccccC--CCCCcccceEEEEEEEECCEEEEEEEecCCcccc
Confidence 33332 233344444444456677776432 11211111 1112234678889999999999999999999888
Q ss_pred HHHHHHHHHHHHHHhC
Q 043350 724 AVNRRNADYDHIYRNM 739 (1133)
Q Consensus 724 ~~~~Rn~d~~~i~~~~ 739 (1133)
...+|...+..+...+
T Consensus 239 ~~~~R~~Q~~~l~~~~ 254 (362)
T 4gew_A 239 HRPQRCAQFGFCMDKV 254 (362)
T ss_dssp GHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHh
Confidence 8888888888877654
No 186
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.12 E-value=9.6e-10 Score=120.49 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=37.5
Q ss_pred cccceeEEEEEEEcCeEEEEEecccccChHHHHHHHHHHHHHHHhC
Q 043350 694 IGNKGGVGLRIRVYDRTICFVNCHLAAHLEAVNRRNADYDHIYRNM 739 (1133)
Q Consensus 694 ~gnKG~v~~r~~~~~~~~~fvn~Hlaa~~~~~~~Rn~d~~~i~~~~ 739 (1133)
+..++++.+++.+.+..|+++|+||.+.....+.|.+++..|++.+
T Consensus 120 ~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~r~~q~~~l~~~~ 165 (266)
T 3teb_A 120 ISARRIVSITINYEGQDIEFYSCHMNLPNCETEDMGKNIQTILNRT 165 (266)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEECCCTTCTTCCHHHHHHHHHTSS
T ss_pred cccceEEEEEEEeCCeEEEEEEecCCCccCChHHHHHHHHHHHHHH
Confidence 4568999999999999999999999988654556777888876643
No 187
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.12 E-value=4.9e-09 Score=119.13 Aligned_cols=251 Identities=10% Similarity=0.022 Sum_probs=146.3
Q ss_pred CCeEEEEEeCCCCEEEEEeCC---Ce--EEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEE
Q 043350 213 SPTMCLMVDCGNRLVWTGHKD---GK--IRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIK 286 (1133)
Q Consensus 213 s~V~~la~spd~~~LaSgs~D---g~--V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~ 286 (1133)
..+.+++|+|||+.|+.++.+ +. |.+|++.+ .....+..+.. +.+++|+|+|+ |+.++.+..
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~---------g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~-- 126 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLET---------LSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRR-- 126 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTT---------TEEEEEEEESE-EEEEEECTTSSEEEEEEECCC--
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCC---------CceEEEEcCCC-ccceeECCCCCEEEEEEccCC--
Confidence 468899999999999888764 34 77777765 22233333344 99999999999 887765420
Q ss_pred EEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCcee
Q 043350 287 IWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELL 366 (1133)
Q Consensus 287 iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l 366 (1133)
... ... .+ ..+.....+.. . .. .....|.+||+.+++.+
T Consensus 127 ----~~~--------~~~----------~~--------~~~~~~~~g~~--~-~~--------~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 127 ----EDE--------DFI----------FE--------DDVPAWFDDLG--F-FD--------GEKTTFWIFDTESEEVI 165 (347)
T ss_dssp ----C-----------------------------------CCCC--------------------CEEEEEEEETTTTEEE
T ss_pred ----CcC--------CcE----------EE--------cccceeecCcc--c-cc--------CccceEEEEECCCCeEE
Confidence 000 000 00 00000000000 0 00 12345778898888875
Q ss_pred EEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccc-cccccccceeeccCCceEEEEEecCCcccCCCCCEEEE
Q 043350 367 KVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPH-GFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAM 445 (1133)
Q Consensus 367 ~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~-~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl 445 (1133)
+.+.. . .+..+.|+|++ + +++++.++... ......+..+. ...+..+. .+ ..+..+
T Consensus 166 ~~l~~-~-~~~~~~~spdg-~---------~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~--------~~-~~~~~~ 222 (347)
T 2gop_A 166 EEFEK-P-RFSSGIWHRDK-I---------VVNVPHREIIPQYFKFWDIYIWE--DGKEEKMF--------EK-VSFYAV 222 (347)
T ss_dssp EEEEE-E-TTCEEEEETTE-E---------EEEEECCCSSCCSSCCEEEEEEE--TTEEEEEE--------EE-ESEEEE
T ss_pred eeecC-C-CcccccCCCCe-E---------EEEEecccccccccccccEEEeC--CCceEEec--------cC-cceeeE
Confidence 55554 3 77889999999 8 77776553210 00000001111 11122111 11 233443
Q ss_pred EECCCC-eEEEEecC--------CeEEEEeCCCCeeEEEecCCcceeE---EecCCCEEEEEecCCeEEEEeCC-CCcce
Q 043350 446 VLTADG-MIWSGCTN--------GLLVQWDGNGNRVSDILHHQCAVQC---FCTYGSRMYVGYVSGYLQILDLD-GNLTA 512 (1133)
Q Consensus 446 ~~spdg-~L~sgs~D--------G~I~vWd~~g~~l~~~~~h~~~V~~---fs~dg~~Lasgs~DG~I~vwd~~-g~~l~ 512 (1133)
+|+| .|+.++.+ ..|.+|| .++.......+...+.. |+ +| ++++++.++.++|| +. ++. .
T Consensus 223 --spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~-~ 295 (347)
T 2gop_A 223 --DSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI-K 295 (347)
T ss_dssp --EECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE-E
T ss_pred --CCCCCEEEEEEccccCCccccceEEEEC-CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce-E
Confidence 8899 77766644 4788888 66544434445556652 77 88 89999999999999 86 433 4
Q ss_pred eeeccccCeEEeeecccceeeecccCCe-eecccc
Q 043350 513 SWIAHSSPVLKLAVGVDHIYSLAAHGGI-RGWTFT 546 (1133)
Q Consensus 513 ~~~~H~~~V~~l~fs~~~L~S~s~Dg~I-~lW~l~ 546 (1133)
.+..+...|.+++|+...+++++.++.. .+|.+.
T Consensus 296 ~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 296 PIAKGRHWIMGFDVDEIVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEECSSSEEEEEEESSSEEEEEECSSSCCEEEEES
T ss_pred EEecCCCeEEeeeeeCcEEEEEcCCCChHHheEeC
Confidence 4555677889999887556667777765 788764
No 188
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.12 E-value=4.3e-09 Score=119.47 Aligned_cols=244 Identities=9% Similarity=0.062 Sum_probs=155.6
Q ss_pred ccccCCCCCEEEEecCC------------------------CeEEeccCCCCCCCCCCeeeec-cCCCccccccceEEEE
Q 043350 108 HKPFQPMVEFIGSGGGT------------------------GIFKVPSRAAVHPGRPPCLELR-PHPLKETQAGRFLRNI 162 (1133)
Q Consensus 108 ~~~~~p~g~~lasgs~d------------------------g~irlW~~~~~~~g~~~~~~l~-~H~~~~~~~g~~V~~v 162 (1133)
.+.++|+|+++++.+.+ +.|.+||..+ ++. ...+. ++-. ....|
T Consensus 28 ~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~---g~~-~~~~~~~~~~-------~p~gi 96 (329)
T 3fvz_A 28 GVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN---AEI-LQSSGKNLFY-------LPHGL 96 (329)
T ss_dssp EEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT---CCE-EEEECTTTCS-------SEEEE
T ss_pred EEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC---CeE-EeccCCCccC-------CceEE
Confidence 37789999999988887 4688888753 443 33332 2222 56788
Q ss_pred E-eCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC-CCCEEEEEe-CCCeEE
Q 043350 163 A-CTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC-GNRLVWTGH-KDGKIR 237 (1133)
Q Consensus 163 ~-s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp-d~~~LaSgs-~Dg~V~ 237 (1133)
+ .++|.+++ ..++.|++|+..+....+......-..| ....+......|+++| ++.++++.+ .++.|+
T Consensus 97 a~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g-------~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~ 169 (329)
T 3fvz_A 97 SIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPG-------SDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV 169 (329)
T ss_dssp EECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCC-------CSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred EECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCC-------CCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence 8 88998888 5578999999876421111000000000 0123555689999999 888888886 689999
Q ss_pred EEeCCCCCCCCCCCcccccccc----------cCCCCeEEEEEeeC-Cc-EEEEeCCCcEEEEeCCCC--ceeeEeCCCC
Q 043350 238 SWKMDQTLDDANNPFKEGLSWQ----------AHRGPVLAMIFSSQ-GD-LWSGGEGGVIKIWPWESI--EKSLSLKPEE 303 (1133)
Q Consensus 238 vWd~~~~~~~~~~~~~~~~~l~----------gH~~~V~sl~fsp~-g~-L~Sgs~DgtI~iWdl~~~--~~~l~~~~~~ 303 (1133)
+|+.++ ..+..+. ++-....+|+++|+ |. +++...++.|++|+.+++ ...+.....+
T Consensus 170 ~~~~~g---------~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~ 240 (329)
T 3fvz_A 170 QFSPSG---------KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFG 240 (329)
T ss_dssp EECTTS---------CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTT
T ss_pred EEcCCC---------CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccC
Confidence 999765 3333332 23345899999998 77 778788999999999742 2222111111
Q ss_pred ceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEe---cCCcceeEEE
Q 043350 304 KHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFN---IEGHIENRVD 380 (1133)
Q Consensus 304 ~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~---~h~~~v~~l~ 380 (1133)
.. .+. +.. .+ ..++.. ++.+.+-...+..|.+||..+++.+..+. .+......++
T Consensus 241 ~~---------~~~---------~~~--~p-g~~~~~-~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia 298 (329)
T 3fvz_A 241 RN---------VFA---------ISY--IP-GFLFAV-NGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIV 298 (329)
T ss_dssp TC---------EEE---------EEE--ET-TEEEEE-ECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEE
T ss_pred CC---------cce---------eee--cC-CEEEEe-CCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEE
Confidence 11 111 011 11 122222 22333333556789999999999999884 5556688999
Q ss_pred eCCCCCccccccceEEEEeeCCCCccccc
Q 043350 381 TQSVQDQPVEDEMKVKFVSSNKKEKPHGF 409 (1133)
Q Consensus 381 ~sp~g~~~~e~e~~v~lasgs~Dg~i~~~ 409 (1133)
++|++.+ +++...+++|+.|
T Consensus 299 ~~~dG~l---------yvad~~~~~I~~~ 318 (329)
T 3fvz_A 299 ASEDGTV---------YIGDAHTNTVWKF 318 (329)
T ss_dssp ECTTSEE---------EEEESSSCCEEEE
T ss_pred ECCCCCE---------EEEECCCCEEEEE
Confidence 9999987 8888888888633
No 189
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.11 E-value=4.2e-09 Score=132.44 Aligned_cols=150 Identities=11% Similarity=-0.086 Sum_probs=93.5
Q ss_pred CCCCCEEEEecCCC---eEEeccCCCCCCCCCCeeeec------cCCCccccccceEEEEE-eCCCCeEE---ec----C
Q 043350 112 QPMVEFIGSGGGTG---IFKVPSRAAVHPGRPPCLELR------PHPLKETQAGRFLRNIA-CTDTQLWA---GQ----E 174 (1133)
Q Consensus 112 ~p~g~~lasgs~dg---~irlW~~~~~~~g~~~~~~l~------~H~~~~~~~g~~V~~v~-s~dg~lla---s~----D 174 (1133)
.|+|++++-...++ .-.||..... .+.. ..-+. +|.. .+..++ ||||++|| +. +
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~-~~~~-~~l~d~~~~a~~~~~-------~~~~~~~SPDG~~la~~~~~~G~~~ 146 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGE-SGQE-KVLLDPNGWSKDGTV-------SLGTWAVSWDGKKVAFAQKPNAADE 146 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEEST-TSCC-EEEECGGGSSSSSCE-------EEEEEEECTTSSEEEEEEEETTCSC
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCC-CCCc-EEEEchHHhccCCCE-------EEEEEEECCCCCEEEEEECCCCCce
Confidence 58899887765543 3445543211 1222 22222 2333 678888 99999999 22 3
Q ss_pred CcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCe-------------EEEEeC
Q 043350 175 CGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGK-------------IRSWKM 241 (1133)
Q Consensus 175 g~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~-------------V~vWd~ 241 (1133)
.+|++||+.+.......+ .... ....++|+|||+.|+.++.|.. |++|++
T Consensus 147 ~~i~v~dl~tg~~~~~~~--------------~~~~---~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l 209 (695)
T 2bkl_A 147 AVLHVIDVDSGEWSKVDV--------------IEGG---KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTL 209 (695)
T ss_dssp CEEEEEETTTCCBCSSCC--------------BSCC---TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEET
T ss_pred EEEEEEECCCCCCcCCcc--------------cCcc---cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEEC
Confidence 579999998742210000 0101 1256899999999999998876 999999
Q ss_pred CCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCC----cEEEEeCC
Q 043350 242 DQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGG----VIKIWPWE 291 (1133)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~Dg----tI~iWdl~ 291 (1133)
.++.. .-..+.....|...+.++.|+|+|+ |+.++.++ .|.+|+..
T Consensus 210 ~t~~~----~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~ 260 (695)
T 2bkl_A 210 GTEPS----KDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG 260 (695)
T ss_dssp TSCGG----GCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT
T ss_pred CCCch----hceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC
Confidence 86221 0023334445667899999999999 77776655 56666543
No 190
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.10 E-value=1.4e-08 Score=114.90 Aligned_cols=274 Identities=11% Similarity=0.076 Sum_probs=163.7
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCCCC
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLEDS 185 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~~~ 185 (1133)
..|+|++..+++.+.++.++.|. +.. ...+..+.. .+.+++ +++|++++ ..++.|.+||..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~-------~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~ 76 (333)
T 2dg1_A 11 LFYSGKSNSAVPIISESELQTIT------AEP-WLEISKKGL-------QLEGLNFDRQGQLFLLDVFEGNIFKINPETK 76 (333)
T ss_dssp CCSCGGGGCSSCCCCGGGSCEEE------CEE-EEEEESSCC-------CEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred eeecCCccceeEEeecccCcccc------cce-eEEEeccCc-------cccCcEECCCCCEEEEECCCCEEEEEeCCCC
Confidence 56788887777778888888882 333 556666655 677888 88999887 46789999998753
Q ss_pred CCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCC----CeEEEEeCCCCCCCCCCCcccccccccC
Q 043350 186 YEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKD----GKIRSWKMDQTLDDANNPFKEGLSWQAH 261 (1133)
Q Consensus 186 ~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~D----g~V~vWd~~~~~~~~~~~~~~~~~l~gH 261 (1133)
... . ....+...+.++++++++++++++..+ +.|.+||.++... .....-..+
T Consensus 77 ~~~----------------~-~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~------~~~~~~~~~ 133 (333)
T 2dg1_A 77 EIK----------------R-PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL------QDIIEDLST 133 (333)
T ss_dssp CEE----------------E-EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC------EEEECSSSS
T ss_pred cEE----------------E-EeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE------EEEEccCcc
Confidence 111 0 111234578999999999988887776 6899999876211 111111134
Q ss_pred CCCeEEEEEeeCCc-EEEEeCC----CcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeE
Q 043350 262 RGPVLAMIFSSQGD-LWSGGEG----GVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIK 336 (1133)
Q Consensus 262 ~~~V~sl~fsp~g~-L~Sgs~D----gtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~ 336 (1133)
...+.+++++|+|+ +++...+ +...||.+
T Consensus 134 ~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~---------------------------------------------- 167 (333)
T 2dg1_A 134 AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYV---------------------------------------------- 167 (333)
T ss_dssp CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEE----------------------------------------------
T ss_pred CCcccceEECCCCCEEEEeccccccCCCceEEEE----------------------------------------------
Confidence 56799999999998 4444321 12222222
Q ss_pred EEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccce
Q 043350 337 CMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNA 416 (1133)
Q Consensus 337 ~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~ 416 (1133)
|..+++... +.........++++|+++. + +++.+.++.|..++....
T Consensus 168 ----------------------~~~~~~~~~-~~~~~~~~~~i~~~~dg~~-------l-~v~~~~~~~i~~~d~~~~-- 214 (333)
T 2dg1_A 168 ----------------------SPDFRTVTP-IIQNISVANGIALSTDEKV-------L-WVTETTANRLHRIALEDD-- 214 (333)
T ss_dssp ----------------------CTTSCCEEE-EEEEESSEEEEEECTTSSE-------E-EEEEGGGTEEEEEEECTT--
T ss_pred ----------------------eCCCCEEEE-eecCCCcccceEECCCCCE-------E-EEEeCCCCeEEEEEecCC--
Confidence 111111111 1111123567788888874 0 344445556643322100
Q ss_pred eeccCCceE----EEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCCCCeeEEEecCCc------ceeE-
Q 043350 417 IMGAADAVR----RVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGNGNRVSDILHHQC------AVQC- 484 (1133)
Q Consensus 417 ~~~~~~~V~----~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g~~l~~~~~h~~------~V~~- 484 (1133)
...+. .+... +.++ ..+..++++++| .+++...++.|.+||.+++.+..+..+.. .+.+
T Consensus 215 ----g~~~~~~~~~~~~~----~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~ 285 (333)
T 2dg1_A 215 ----GVTIQPFGATIPYY----FTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHP 285 (333)
T ss_dssp ----SSSEEEEEEEEEEE----CCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEE
T ss_pred ----CcCcccccceEEEe----cCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceE
Confidence 00010 11111 1111 356778999999 55555567899999998888887765432 3444
Q ss_pred -EecCCCEEEEEecCC------eEEEEeCC
Q 043350 485 -FCTYGSRMYVGYVSG------YLQILDLD 507 (1133)
Q Consensus 485 -fs~dg~~Lasgs~DG------~I~vwd~~ 507 (1133)
|+++++.|++++.++ .|..+++.
T Consensus 286 ~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 286 QFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp EECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred EECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 889988888777663 45555543
No 191
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=99.05 E-value=5.3e-10 Score=122.70 Aligned_cols=128 Identities=13% Similarity=0.150 Sum_probs=78.3
Q ss_pred EEEEEEcCCCCCCchhhhhhhcCCCCCccEEEEeeeecccccchhhhhhhhhhhcCCCCcchhhHHHHHhhhcCCCCcEE
Q 043350 575 LVGTWNVGQGRASHESLLSWLGSVSSDVGIVAVGLQEVEMGAGFLAMSAAKETVGLEGSAIGQWWQDTIGKALDEGTTFE 654 (1133)
Q Consensus 575 ~v~TWNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~y~ 654 (1133)
.+.|||+++.....+.+.++|.. .+||| |+|||+...... ...+.+. . .++.|.
T Consensus 2 rv~t~Nv~~~~~~~~~i~~~i~~--~~~Di--i~LQE~~~~~~~-------------------~~~~~l~-~--~gy~~~ 55 (268)
T 1ako_A 2 KFVSFNINGLRARPHQLEAIVEK--HQPDV--IGLQETKVHDDM-------------------FPLEEVA-K--LGYNVF 55 (268)
T ss_dssp EEEEEECSCGGGCHHHHHHHHHH--HCCSE--EEEECCCCCGGG-------------------CCHHHHH-H--TTCEEE
T ss_pred EEEEEehhHHHHHHHHHHHHHHH--cCCCE--EEEEeccCChhh-------------------CCHhHhc-c--CCCcEE
Confidence 57899999766555678888863 45785 789999643110 0111221 1 245443
Q ss_pred EEeeeecceEEEEEEEecccccccCceeeccccccccc--ccccceeEEEEEEEcCeEEEEEecccccChH-----HHHH
Q 043350 655 RMGSRQLAGLLISFWVRKNLRTHVGDVDAAAVPCGFGR--AIGNKGGVGLRIRVYDRTICFVNCHLAAHLE-----AVNR 727 (1133)
Q Consensus 655 ~v~~~~l~g~~l~v~~~~~~~~~i~~v~~~~v~~G~~~--~~gnKG~v~~r~~~~~~~~~fvn~Hlaa~~~-----~~~~ 727 (1133)
... +-.+-.+++|.|..+.. +. .++.+ ...+++++.+++.+.+..|+++|+||.+... ..+.
T Consensus 56 ~~~--~~~~~G~ailsr~~~~~----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~ 124 (268)
T 1ako_A 56 YHG--QKGHYGVALLTKETPIA----VR-----RGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPA 124 (268)
T ss_dssp EEE--ETTEEEEEEEESSCCSE----EE-----ESSTTCCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHH
T ss_pred EeC--CCCcceEEEEEecCcce----ee-----eCCCCcccccCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHH
Confidence 333 23334456677765432 22 12221 1356789999999988899999999987753 4556
Q ss_pred HHHHHHHHHHhC
Q 043350 728 RNADYDHIYRNM 739 (1133)
Q Consensus 728 Rn~d~~~i~~~~ 739 (1133)
|.+.+..|.+.+
T Consensus 125 r~~~~~~l~~~~ 136 (268)
T 1ako_A 125 KAQFYQNLQNYL 136 (268)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776554
No 192
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.04 E-value=1.4e-08 Score=116.91 Aligned_cols=271 Identities=11% Similarity=0.108 Sum_probs=155.8
Q ss_pred CCCEEEEEe------CCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEe----------CCCcE
Q 043350 223 GNRLVWTGH------KDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGG----------EGGVI 285 (1133)
Q Consensus 223 d~~~LaSgs------~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs----------~DgtI 285 (1133)
++++++... .|++|.+||...+ +.+..+..+..+ .++|+|+|+ |++++ .+++|
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~--------~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v 83 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNG--------KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVV 83 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTC--------CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEE
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCC--------eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEE
Confidence 455665543 4789999998651 334455666565 899999999 77775 36789
Q ss_pred EEEeCCCCc--eeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCC
Q 043350 286 KIWPWESIE--KSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSK 363 (1133)
Q Consensus 286 ~iWdl~~~~--~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg 363 (1133)
.+||..+.. ..+...+.... . ......+...+++...+++.. ..+++|.+||+.++
T Consensus 84 ~v~d~~t~~~~~~i~~~~~~~~---~-----------g~~p~~i~~spdg~~l~v~n~--------~~~~~v~v~d~~~~ 141 (361)
T 2oiz_A 84 EVWDADKLTFEKEISLPPKRVQ---G-----------LNYDGLFRQTTDGKFIVLQNA--------SPATSIGIVDVAKG 141 (361)
T ss_dssp EEEETTTCCEEEEEEECTTBCC---B-----------CCCGGGEEECTTSSEEEEEEE--------SSSEEEEEEETTTT
T ss_pred EEEECcCCcEEEEEEcCccccc---c-----------CCCcceEEECCCCCEEEEECC--------CCCCeEEEEECCCC
Confidence 999987632 22222111000 0 000000111122222222221 23688999999999
Q ss_pred ceeEE-EecCCcceeEEEeCCCC-CccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCC
Q 043350 364 ELLKV-FNIEGHIENRVDTQSVQ-DQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKR 441 (1133)
Q Consensus 364 ~~l~~-~~~h~~~v~~l~~sp~g-~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~ 441 (1133)
+.+.. +..... ..+.+.|++ .. +++.+.||++..+.... .+.+...... ...+.....+
T Consensus 142 ~~~~~~i~~~~~--~~v~~~p~~~~~---------~~~~~~dg~~~~v~~~~-------~g~~~~~~~~-~~~~~~~~~~ 202 (361)
T 2oiz_A 142 DYVEDVTAAAGC--WSVIPQPNRPRS---------FMTICGDGGLLTINLGE-------DGKVASQSRS-KQMFSVKDDP 202 (361)
T ss_dssp EEEEEEGGGTTE--EEEEECTTSSSE---------EEEEETTSSEEEEEECT-------TSSEEEEEEC-CCCSCTTTSC
T ss_pred cEEEEEecCCCc--ceeEEcCCCCee---------EEEECCCCcEEEEEECC-------CCcEeeeccc-cceEcCCCCc
Confidence 88877 554322 234566765 33 66777777764221110 0001100000 0001111111
Q ss_pred EEEEEECCCC-eEEEEecCCeEEEEeCCCCe---eEEEec------------CCcceeEEecCCCEEEEEec--------
Q 043350 442 TEAMVLTADG-MIWSGCTNGLLVQWDGNGNR---VSDILH------------HQCAVQCFCTYGSRMYVGYV-------- 497 (1133)
Q Consensus 442 V~sl~~spdg-~L~sgs~DG~I~vWd~~g~~---l~~~~~------------h~~~V~~fs~dg~~Lasgs~-------- 497 (1133)
+ .+.+++++ .++..+.++.|.++|..+.. +..+.. .......|++++++++++..
T Consensus 203 ~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~ 281 (361)
T 2oiz_A 203 I-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTH 281 (361)
T ss_dssp B-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCT
T ss_pred e-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccc
Confidence 1 22235566 66666788999999985422 222211 11112469999998887654
Q ss_pred ---CCeEEEEeCC-CCcceeeeccccCeEEeeec--ccceeeecccCCeeeccccCC
Q 043350 498 ---SGYLQILDLD-GNLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTSP 548 (1133)
Q Consensus 498 ---DG~I~vwd~~-g~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s~ 548 (1133)
++.|.+||+. ++.+.++..+. +.+|+|+ +++|++++. +.|.+||..+.
T Consensus 282 ~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 282 KFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred cCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 3589999997 46778888877 8999998 888888886 99999997764
No 193
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.04 E-value=3.1e-09 Score=122.77 Aligned_cols=275 Identities=7% Similarity=-0.026 Sum_probs=142.7
Q ss_pred EEEEE-eCCCCeEE-e-c-C--CcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeC
Q 043350 159 LRNIA-CTDTQLWA-G-Q-E--CGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHK 232 (1133)
Q Consensus 159 V~~v~-s~dg~lla-s-~-D--g~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~ 232 (1133)
+..++ +|||+.++ . . + ..|.+||+.+..... +...+.....++.|+|+++.|+.++.
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-----------------l~~~~~~~~~~~~~spdg~~l~~~~~ 100 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-----------------LTEGKGDNTFGGFISTDERAFFYVKN 100 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-----------------CCCSSCBCTTTCEECTTSSEEEEEET
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-----------------eecCCCCccccceECCCCCEEEEEEc
Confidence 44556 89999887 3 2 2 367888876632110 00111112223679999999999999
Q ss_pred CCeEEEEeCCCCCCCCCCCcccccccccCCCCeEE-------------------EEEeeCCc-EEEE-----eCCCcEEE
Q 043350 233 DGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLA-------------------MIFSSQGD-LWSG-----GEGGVIKI 287 (1133)
Q Consensus 233 Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~s-------------------l~fsp~g~-L~Sg-----s~DgtI~i 287 (1133)
++.|++|++.++.. ......+...... ++|+|+++ ++.+ ..+..|.+
T Consensus 101 ~~~l~~~d~~~~~~--------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~ 172 (396)
T 3c5m_A 101 ELNLMKVDLETLEE--------QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK 172 (396)
T ss_dssp TTEEEEEETTTCCE--------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred CCcEEEEECCCCCc--------EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence 99999999986221 1122223221111 34566666 4433 35667888
Q ss_pred EeCCCCcee-eEeCCCCceEEEEeecceEEEccCceeeeccccCC-CCCeEEEEecCCceEEEecCCCceeEeecCCCce
Q 043350 288 WPWESIEKS-LSLKPEEKHMAALLVERSFIDLRAQVTVNGACSIS-STEIKCMLSDHARARVWCAQPLSFSLWDARSKEL 365 (1133)
Q Consensus 288 Wdl~~~~~~-l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~-~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~ 365 (1133)
||+.+.... +....... ......+ ++..+++++.+.. ......|.+||+..++.
T Consensus 173 ~d~~~g~~~~~~~~~~~~--------------------~~~~~sp~dg~~l~~~~~~~~----~~~~~~l~~~d~~~~~~ 228 (396)
T 3c5m_A 173 VDIETGELEVIHQDTAWL--------------------GHPIYRPFDDSTVGFCHEGPH----DLVDARMWLVNEDGSNV 228 (396)
T ss_dssp EETTTCCEEEEEEESSCE--------------------EEEEEETTEEEEEEEEECSCS----SSCSCCCEEEETTSCCC
T ss_pred EECCCCcEEeeccCCccc--------------------ccceECCCCCCEEEEEecCCC----CCCCceEEEEECCCCce
Confidence 887653211 11110000 0011112 1222222222000 00114677888766554
Q ss_pred eEEEecC-CcceeEEEeCCCCCccccccceEEEEeeCCC-C----ccccccccccceeeccCCceEEEEEecCCcccCCC
Q 043350 366 LKVFNIE-GHIENRVDTQSVQDQPVEDEMKVKFVSSNKK-E----KPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDT 439 (1133)
Q Consensus 366 l~~~~~h-~~~v~~l~~sp~g~~~~e~e~~v~lasgs~D-g----~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~ 439 (1133)
....... ...+..+.|+|+++. |+.++.+ + .++.++.. ......+... .
T Consensus 229 ~~l~~~~~~~~~~~~~~spdg~~---------l~~~~~~~~~~~~~l~~~d~~--------~g~~~~l~~~-----~--- 283 (396)
T 3c5m_A 229 RKIKEHAEGESCTHEFWIPDGSA---------MAYVSYFKGQTDRVIYKANPE--------TLENEEVMVM-----P--- 283 (396)
T ss_dssp EESSCCCTTEEEEEEEECTTSSC---------EEEEEEETTTCCEEEEEECTT--------TCCEEEEEEC-----C---
T ss_pred eEeeccCCCccccceEECCCCCE---------EEEEecCCCCccceEEEEECC--------CCCeEEeeeC-----C---
Confidence 3333321 235778999999997 6665443 1 13322211 1112222111 0
Q ss_pred CCEEEEEECC-CC-eEEEEe----------------cCCeEEEEeCCCCeeEEEecCCcc-----------e--eEEecC
Q 043350 440 KRTEAMVLTA-DG-MIWSGC----------------TNGLLVQWDGNGNRVSDILHHQCA-----------V--QCFCTY 488 (1133)
Q Consensus 440 ~~V~sl~~sp-dg-~L~sgs----------------~DG~I~vWd~~g~~l~~~~~h~~~-----------V--~~fs~d 488 (1133)
... +.++| +| .+++++ .++.|.+||..+..+..+..+... + .+|+||
T Consensus 284 -~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~d 361 (396)
T 3c5m_A 284 -PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPN 361 (396)
T ss_dssp -SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTT
T ss_pred -CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccC
Confidence 122 67888 88 666644 347899999965444555555442 2 249999
Q ss_pred CCEEEEEec-CCeEEEE--eCCCC
Q 043350 489 GSRMYVGYV-SGYLQIL--DLDGN 509 (1133)
Q Consensus 489 g~~Lasgs~-DG~I~vw--d~~g~ 509 (1133)
|++|+.++. ++...|| ++.+.
T Consensus 362 g~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 362 DDGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp SSEEEEEECTTSSCEEEEEECCTT
T ss_pred CCeEEEEecCCCCceEEEEEEccc
Confidence 998887764 5554444 55543
No 194
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.03 E-value=5.9e-09 Score=117.88 Aligned_cols=259 Identities=9% Similarity=0.019 Sum_probs=159.4
Q ss_pred CeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCC
Q 043350 214 PTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWES 292 (1133)
Q Consensus 214 ~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~ 292 (1133)
.|.+++|++++..++..+.++.++.|. . .....+..+...+.+++|+++|+ ++++..++.|.+||..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~ 75 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTIT--A---------EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET 75 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEEE--C---------EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred ccceeeecCCccceeEEeecccCcccc--c---------ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCC
Confidence 466777888888887778889999992 2 33445667777789999999999 66888899999999876
Q ss_pred Cce-eeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCC----CceeEeecCCCceeE
Q 043350 293 IEK-SLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQP----LSFSLWDARSKELLK 367 (1133)
Q Consensus 293 ~~~-~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d----~~I~lWD~~tg~~l~ 367 (1133)
... .+....... +..+. .+.++.+.+....+ +.|.+||..++....
T Consensus 76 ~~~~~~~~~~~~~-------------------~~~i~----------~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~ 126 (333)
T 2dg1_A 76 KEIKRPFVSHKAN-------------------PAAIK----------IHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD 126 (333)
T ss_dssp CCEEEEEECSSSS-------------------EEEEE----------ECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred CcEEEEeeCCCCC-------------------cceEE----------ECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEE
Confidence 322 111111100 01111 11122221111233 578889988777654
Q ss_pred EEe--cCCcceeEEEeCCCCCccccccceEEEEeeCCC------CccccccccccceeeccCCceEEEEEecCCcccCCC
Q 043350 368 VFN--IEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKK------EKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDT 439 (1133)
Q Consensus 368 ~~~--~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~D------g~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~ 439 (1133)
.+. .....+..+.++|++.+ +++...+ +.+..++.. ...+..+. ...
T Consensus 127 ~~~~~~~~~~~~~i~~d~~g~l---------~v~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~--------~~~ 181 (333)
T 2dg1_A 127 IIEDLSTAYCIDDMVFDSKGGF---------YFTDFRGYSTNPLGGVYYVSPD--------FRTVTPII--------QNI 181 (333)
T ss_dssp EECSSSSCCCEEEEEECTTSCE---------EEEECCCBTTBCCEEEEEECTT--------SCCEEEEE--------EEE
T ss_pred EEccCccCCcccceEECCCCCE---------EEEeccccccCCCceEEEEeCC--------CCEEEEee--------cCC
Confidence 443 23456889999999987 6665432 222222111 11111111 111
Q ss_pred CCEEEEEECCCC-eEEE-EecCCeEEEEeC--CCCeeEEE--------ecCCcceeE--EecCCCEEEEEecCCeEEEEe
Q 043350 440 KRTEAMVLTADG-MIWS-GCTNGLLVQWDG--NGNRVSDI--------LHHQCAVQC--FCTYGSRMYVGYVSGYLQILD 505 (1133)
Q Consensus 440 ~~V~sl~~spdg-~L~s-gs~DG~I~vWd~--~g~~l~~~--------~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd 505 (1133)
..+..++++|+| .|+. ...++.|.+|+. ++..+..+ ..+ ..+.+ ++++|+++++...++.|.+||
T Consensus 182 ~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d 260 (333)
T 2dg1_A 182 SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFN 260 (333)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred CcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEEC
Confidence 246788999998 5654 456889999998 44443322 111 23343 888998777777789999999
Q ss_pred CCCCcceeeecccc------CeEEeeec--ccceeeecccC
Q 043350 506 LDGNLTASWIAHSS------PVLKLAVG--VDHIYSLAAHG 538 (1133)
Q Consensus 506 ~~g~~l~~~~~H~~------~V~~l~fs--~~~L~S~s~Dg 538 (1133)
.+++.+..+..+.. .+.+++|+ ++.|+.++.++
T Consensus 261 ~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 261 KRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp TTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 98877766655433 68889997 45676555553
No 195
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.99 E-value=5.4e-07 Score=99.28 Aligned_cols=273 Identities=9% Similarity=0.055 Sum_probs=162.2
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEe
Q 043350 211 NTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWP 289 (1133)
Q Consensus 211 h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWd 289 (1133)
+...+.++++++++++.++...++.|.+|+... .. .. .....+...+.+|+++++|. +++...++.|..|+
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~-~~------~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 84 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLDG-KI------TE-YPLPTPDAKVMCLTISSDGEVWFTENAANKIGRIT 84 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTTC-CE------EE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCCC-Ce------EE-ecCCcccCceeeEEECCCCCEEEeCCCCCeEEEEC
Confidence 345789999999999877766689999999873 11 11 11223456799999999999 55555588899998
Q ss_pred CCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEE
Q 043350 290 WESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVF 369 (1133)
Q Consensus 290 l~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~ 369 (1133)
.......+........ .. .+....++.+.+-...++.|..||. +++.....
T Consensus 85 ~~g~~~~~~~~~~~~~------------------~~----------~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~ 135 (299)
T 2z2n_A 85 KKGIIKEYTLPNPDSA------------------PY----------GITEGPNGDIWFTEMNGNRIGRITD-DGKIREYE 135 (299)
T ss_dssp TTSCEEEEECSSTTCC------------------EE----------EEEECTTSCEEEEETTTTEEEEECT-TCCEEEEE
T ss_pred CCCcEEEEeCCCcCCC------------------ce----------eeEECCCCCEEEEecCCceEEEECC-CCCEEEec
Confidence 7633222221101100 00 0111122322222244677888887 55544322
Q ss_pred -ecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEEC
Q 043350 370 -NIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLT 448 (1133)
Q Consensus 370 -~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~s 448 (1133)
......+..+++.+++.+ .++...++.+..++. ...+..+. +......+..++++
T Consensus 136 ~~~~~~~~~~i~~~~~g~l---------~v~~~~~~~i~~~~~---------~g~~~~~~------~~~~~~~~~~i~~~ 191 (299)
T 2z2n_A 136 LPNKGSYPSFITLGSDNAL---------WFTENQNNAIGRITE---------SGDITEFK------IPTPASGPVGITKG 191 (299)
T ss_dssp CSSTTCCEEEEEECTTSCE---------EEEETTTTEEEEECT---------TCCEEEEE------CSSTTCCEEEEEEC
T ss_pred CCCCCCCCceEEEcCCCCE---------EEEeCCCCEEEEEcC---------CCcEEEee------CCCCCCcceeEEEC
Confidence 223455789999999877 666666666643322 11111111 11233457889999
Q ss_pred CCC-eEEEEecCCeEEEEeCCCCeeEEE--ecCCcceeE--EecCCCEEEEEecCCeEEEEeCCCCcceee--eccccCe
Q 043350 449 ADG-MIWSGCTNGLLVQWDGNGNRVSDI--LHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGNLTASW--IAHSSPV 521 (1133)
Q Consensus 449 pdg-~L~sgs~DG~I~vWd~~g~~l~~~--~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~~l~~~--~~H~~~V 521 (1133)
++| .+++...++.|.+|+.++... .+ ..+...+.+ ++++|+..++...++.|.+||..+.. ..+ ..+...+
T Consensus 192 ~~g~l~v~~~~~~~i~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~-~~~~~~~~~~~~ 269 (299)
T 2z2n_A 192 NDDALWFVEIIGNKIGRITTSGEIT-EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNII-EEYPIQIKSAEP 269 (299)
T ss_dssp TTSSEEEEETTTTEEEEECTTCCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETTTEE-EEEECSSSSCCE
T ss_pred CCCCEEEEccCCceEEEECCCCcEE-EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCCCce-EEEeCCCCCCcc
Confidence 999 444445678999999965533 33 223445666 77888855555578999999986643 333 3445678
Q ss_pred EEeeecccceeeecccCCeeecccc
Q 043350 522 LKLAVGVDHIYSLAAHGGIRGWTFT 546 (1133)
Q Consensus 522 ~~l~fs~~~L~S~s~Dg~I~lW~l~ 546 (1133)
.++++.+..|+.+...+.|..++..
T Consensus 270 ~~i~~~~g~l~v~~~~~~l~~~~~~ 294 (299)
T 2z2n_A 270 HGICFDGETIWFAMECDKIGKLTLI 294 (299)
T ss_dssp EEEEECSSCEEEEETTTEEEEEEEC
T ss_pred ceEEecCCCEEEEecCCcEEEEEcC
Confidence 8888773344444335556666544
No 196
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.97 E-value=8e-07 Score=97.90 Aligned_cols=270 Identities=10% Similarity=0.059 Sum_probs=162.1
Q ss_pred eEEEEE-eCCCCeEE-ec-CCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCC
Q 043350 158 FLRNIA-CTDTQLWA-GQ-ECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDG 234 (1133)
Q Consensus 158 ~V~~v~-s~dg~lla-s~-Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg 234 (1133)
.+.+++ .++|.+|+ .. ++.|.+||..+..... ....+...+.++++++++.+.++...++
T Consensus 16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~-----------------~~~~~~~~~~~i~~~~~g~l~v~~~~~~ 78 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQHKANMISCINLDGKITEY-----------------PLPTPDAKVMCLTISSDGEVWFTENAAN 78 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEE-----------------ECSSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred CccceEECCCCCEEEEecCCCcEEEEcCCCCeEEe-----------------cCCcccCceeeEEECCCCCEEEeCCCCC
Confidence 688888 88999998 33 6789999977321111 1112335689999999999888877789
Q ss_pred eEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecc
Q 043350 235 KIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVER 313 (1133)
Q Consensus 235 ~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~ 313 (1133)
.|..|+..+. +. ...+..+...+.++++.++|. +++...++.|.+||.......+........
T Consensus 79 ~i~~~~~~g~-------~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~-------- 142 (299)
T 2z2n_A 79 KIGRITKKGI-------IK-EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSY-------- 142 (299)
T ss_dssp EEEEECTTSC-------EE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCC--------
T ss_pred eEEEECCCCc-------EE-EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCCCCC--------
Confidence 9999997640 11 111223456789999999999 555567889999988432222211111100
Q ss_pred eEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEE-EecCCcceeEEEeCCCCCcccccc
Q 043350 314 SFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKV-FNIEGHIENRVDTQSVQDQPVEDE 392 (1133)
Q Consensus 314 s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~-~~~h~~~v~~l~~sp~g~~~~e~e 392 (1133)
. ..+....++.+.+....++.|..||. +++.... +......+..+++++++.+
T Consensus 143 ----------~----------~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l----- 196 (299)
T 2z2n_A 143 ----------P----------SFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDAL----- 196 (299)
T ss_dssp ----------E----------EEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSE-----
T ss_pred ----------C----------ceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCE-----
Confidence 0 01111222322222244677888888 6665543 2233445778999999877
Q ss_pred ceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEe-cCCeEEEEeCCCCe
Q 043350 393 MKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGC-TNGLLVQWDGNGNR 471 (1133)
Q Consensus 393 ~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs-~DG~I~vWd~~g~~ 471 (1133)
.++...++.+..++. ...+..+ . .......+.+++++++|.|+.+. .++.|..|+.++.
T Consensus 197 ----~v~~~~~~~i~~~~~---------~g~~~~~--~----~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~- 256 (299)
T 2z2n_A 197 ----WFVEIIGNKIGRITT---------SGEITEF--K----IPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNI- 256 (299)
T ss_dssp ----EEEETTTTEEEEECT---------TCCEEEE--E----CSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETTTE-
T ss_pred ----EEEccCCceEEEECC---------CCcEEEE--E----CCCCCCCceeEEECCCCCEEEeccCCceEEEECCCCc-
Confidence 766666666643322 1111111 1 12344568899999999555444 6789999999663
Q ss_pred eEEEe--cCCcceeE--EecCCCEEEEEecCCeEEEEeCCC
Q 043350 472 VSDIL--HHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 472 l~~~~--~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g 508 (1133)
+..+. .+...+.+ + ++|.+.++.+ .+.|..++...
T Consensus 257 ~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 257 IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 33442 33455666 5 6666544444 66777777653
No 197
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.95 E-value=5.8e-08 Score=107.36 Aligned_cols=212 Identities=10% Similarity=0.015 Sum_probs=134.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCC-CCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeC
Q 043350 223 GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHR-GPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLK 300 (1133)
Q Consensus 223 d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~-~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~ 300 (1133)
.+++|++++.|+.|.+||..++ +.+..+..|. ..+.+++++|+|+ |+ +.++.|..||..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG--------~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~--------- 64 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK--------EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITRD--------- 64 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT--------EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECTT---------
T ss_pred CCcEEEeeCCCCEEEEEECCCC--------eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECCC---------
Confidence 3689999999999999999431 5556666665 4788999999999 66 456677777652
Q ss_pred CCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecC-CcceeEE
Q 043350 301 PEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIE-GHIENRV 379 (1133)
Q Consensus 301 ~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h-~~~v~~l 379 (1133)
|+.+..+..+ ...+.++
T Consensus 65 --------------------------------------------------------------G~~~W~~~~~~~~~~~~~ 82 (276)
T 3no2_A 65 --------------------------------------------------------------GRELWNIAAPAGCEMQTA 82 (276)
T ss_dssp --------------------------------------------------------------SCEEEEEECCTTCEEEEE
T ss_pred --------------------------------------------------------------CCEEEEEcCCCCcccccc
Confidence 1111222211 1234456
Q ss_pred EeCCCCCccccccceEEEEeeCC-CCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEe
Q 043350 380 DTQSVQDQPVEDEMKVKFVSSNK-KEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGC 457 (1133)
Q Consensus 380 ~~sp~g~~~~e~e~~v~lasgs~-Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs 457 (1133)
.+.+++.. +++.+. ++.+..++. ....++...... ....+......+.+.++| +|++..
T Consensus 83 ~~~~dG~~---------lv~~~~~~~~v~~vd~--------~Gk~l~~~~~~~--~~~~~~~~~~~v~~~~~G~~lv~~~ 143 (276)
T 3no2_A 83 RILPDGNA---------LVAWCGHPSTILEVNM--------KGEVLSKTEFET--GIERPHAQFRQINKNKKGNYLVPLF 143 (276)
T ss_dssp EECTTSCE---------EEEEESTTEEEEEECT--------TSCEEEEEEECC--SCSSGGGSCSCCEECTTSCEEEEET
T ss_pred EECCCCCE---------EEEecCCCCEEEEEeC--------CCCEEEEEeccC--CCCcccccccCceECCCCCEEEEec
Confidence 66677766 655554 444421110 111122222221 111111223345678888 889999
Q ss_pred cCCeEEEEeCCCCeeEEEecCCcceeE-EecCCCEEEEEecCCeEEEEeCC-CCcceeeecccc------CeEEeeec--
Q 043350 458 TNGLLVQWDGNGNRVSDILHHQCAVQC-FCTYGSRMYVGYVSGYLQILDLD-GNLTASWIAHSS------PVLKLAVG-- 527 (1133)
Q Consensus 458 ~DG~I~vWd~~g~~l~~~~~h~~~V~~-fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~H~~------~V~~l~fs-- 527 (1133)
.++.|..||.+|+.+.++..+..+... +.++|++|++++.+++|..+|.+ |+++-++..+.. .+..+...
T Consensus 144 ~~~~v~~~d~~G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~ 223 (276)
T 3no2_A 144 ATSEVREIAPNGQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQN 223 (276)
T ss_dssp TTTEEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTT
T ss_pred CCCEEEEECCCCCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCC
Confidence 999999999999999999875433333 78899999999989999999998 888777665431 25555555
Q ss_pred ccceeee
Q 043350 528 VDHIYSL 534 (1133)
Q Consensus 528 ~~~L~S~ 534 (1133)
+..+++.
T Consensus 224 G~i~v~~ 230 (276)
T 3no2_A 224 GGLYICN 230 (276)
T ss_dssp SCEEEEE
T ss_pred CCEEEEe
Confidence 4444443
No 198
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.92 E-value=1e-07 Score=105.86 Aligned_cols=238 Identities=9% Similarity=0.014 Sum_probs=141.4
Q ss_pred cccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCC
Q 043350 256 LSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISST 333 (1133)
Q Consensus 256 ~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~ 333 (1133)
..+..+.....+++|+|+|+ ++++..++.|..|+..+....+........
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---------------------------- 72 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQN---------------------------- 72 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEE----------------------------
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcc----------------------------
Confidence 34455666788999999998 788888999999998765222211111110
Q ss_pred CeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCC----cceeEEEeCCCCCccccccceEEEEeeCCCCccccc
Q 043350 334 EIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEG----HIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGF 409 (1133)
Q Consensus 334 ~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~----~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~ 409 (1133)
.+....++.+.+-...++.|.+||..+++......... ..+..++++|++.+ +++.+..++...+
T Consensus 73 --~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l---------~vtd~~~g~~~~~ 141 (296)
T 3e5z_A 73 --GHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSL---------WFSDPTYGIDKPE 141 (296)
T ss_dssp --EEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCE---------EEEECSHHHHCGG
T ss_pred --eeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCE---------EEECCcccccccc
Confidence 01111222222222456788999988887654433221 23567999999988 7763322221000
Q ss_pred cccccceeeccCCceEEEEEecCCc---ccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCC--CCe---eEEEecCCc
Q 043350 410 LQRSRNAIMGAADAVRRVATRGAGA---FVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGN--GNR---VSDILHHQC 480 (1133)
Q Consensus 410 ~~~~~~~~~~~~~~V~~v~~~p~g~---~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~--g~~---l~~~~~h~~ 480 (1133)
.... .........++.+ .+++. +..+......++++|+| .+++.+.++.|.+|+.. |.. ...+..+..
T Consensus 142 ~~~~-~~~~~~~~~l~~~--~~~g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 218 (296)
T 3e5z_A 142 EGYG-GEMELPGRWVFRL--APDGTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPG 218 (296)
T ss_dssp GSSC-CCCCSSSCEEEEE--CTTSCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSS
T ss_pred cccc-ccccCCCcEEEEE--CCCCCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCC
Confidence 0000 0000000011111 11111 12344567889999999 66777888999999984 444 233322333
Q ss_pred cee--EEecCCCEEEEEecCCeEEEEeCCCCcceeeeccccCeEEeeec---ccceeeecccC
Q 043350 481 AVQ--CFCTYGSRMYVGYVSGYLQILDLDGNLTASWIAHSSPVLKLAVG---VDHIYSLAAHG 538 (1133)
Q Consensus 481 ~V~--~fs~dg~~Lasgs~DG~I~vwd~~g~~l~~~~~H~~~V~~l~fs---~~~L~S~s~Dg 538 (1133)
.+. +++++|++.++. ++.|++||.+++.+..+..+.. +.+++|. ++.|+.++.++
T Consensus 219 ~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~ 278 (296)
T 3e5z_A 219 KTDGLRVDAGGLIWASA--GDGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE 278 (296)
T ss_dssp CCCSEEEBTTSCEEEEE--TTEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred CCCeEEECCCCCEEEEc--CCeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence 333 388999855544 8899999999988888888877 9999994 56788877764
No 199
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=98.89 E-value=9.6e-09 Score=114.92 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=38.1
Q ss_pred cccceeEEEEEEEcCeEEEEEecccccCh------HHHHHHHHHHHHHHHhC
Q 043350 694 IGNKGGVGLRIRVYDRTICFVNCHLAAHL------EAVNRRNADYDHIYRNM 739 (1133)
Q Consensus 694 ~gnKG~v~~r~~~~~~~~~fvn~Hlaa~~------~~~~~Rn~d~~~i~~~~ 739 (1133)
..+||++.+++.+.+..|.++|+||.+.. .....|.+++..|.+.+
T Consensus 128 ~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i 179 (301)
T 1zwx_A 128 LSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFI 179 (301)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHH
Confidence 45899999999999999999999998873 35667888888887654
No 200
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.88 E-value=1.7e-07 Score=117.94 Aligned_cols=248 Identities=10% Similarity=-0.005 Sum_probs=144.7
Q ss_pred CeEEEEEeCCCCEEEEEeCCC-----eEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCc---
Q 043350 214 PTMCLMVDCGNRLVWTGHKDG-----KIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGV--- 284 (1133)
Q Consensus 214 ~V~~la~spd~~~LaSgs~Dg-----~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~Dgt--- 284 (1133)
.+..++|||||++||.++.++ +|++||+.+ ............+.+++|+|||+ |+.++.++.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t---------g~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 196 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG---------AKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGK 196 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT---------TEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC---------CCCCcccccCcccceEEEEeCCCEEEEEEECCcccc
Confidence 578899999999998776644 899999987 22222111222367899999999 888888776
Q ss_pred -------------EEEEeCCCCce--eeEeCC--CCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEE
Q 043350 285 -------------IKIWPWESIEK--SLSLKP--EEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARV 347 (1133)
Q Consensus 285 -------------I~iWdl~~~~~--~l~~~~--~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~v 347 (1133)
|++|++.+... .+.+.. ...... .....+++..+++.+..+.
T Consensus 197 ~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~------------------~~~~SpDg~~l~~~~~~~~--- 255 (710)
T 2xdw_A 197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMG------------------GAELSDDGRYVLLSIREGC--- 255 (710)
T ss_dssp CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE------------------EEEECTTSCEEEEEEECSS---
T ss_pred ccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEE------------------EEEEcCCCCEEEEEEEccC---
Confidence 99999976421 121111 111100 0111133333333222100
Q ss_pred EecCCCceeEeecCC------Cc-eeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCC----ccccccccccce
Q 043350 348 WCAQPLSFSLWDARS------KE-LLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKE----KPHGFLQRSRNA 416 (1133)
Q Consensus 348 wss~d~~I~lWD~~t------g~-~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg----~i~~~~~~~~~~ 416 (1133)
..+..|.+||+.+ +. .+..+..+...+.. .+++++.. |+..+..+ .|..++....
T Consensus 256 --~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~---------l~~~s~~~~~~~~l~~~d~~~~-- 321 (710)
T 2xdw_A 256 --DPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTV---------FTFKTNRHSPNYRLINIDFTDP-- 321 (710)
T ss_dssp --SSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTE---------EEEEECTTCTTCEEEEEETTSC--
T ss_pred --CCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCE---------EEEEECCCCCCCEEEEEeCCCC--
Confidence 0156888999987 53 45666665555544 47888876 55544332 2221111100
Q ss_pred eeccCCceEEEEEecCCcccCCC--CCEEEEEECCCC-eEEEEecCCe--EEEEeC-CCCeeEEEecCCcceeE--EecC
Q 043350 417 IMGAADAVRRVATRGAGAFVDDT--KRTEAMVLTADG-MIWSGCTNGL--LVQWDG-NGNRVSDILHHQCAVQC--FCTY 488 (1133)
Q Consensus 417 ~~~~~~~V~~v~~~p~g~~~~h~--~~V~sl~~spdg-~L~sgs~DG~--I~vWd~-~g~~l~~~~~h~~~V~~--fs~d 488 (1133)
.......+ ..+. ..+..+.+++++ .+++...|+. |.+|+. +|+.+..+..+...|.. ++++
T Consensus 322 ---~~~~~~~l--------~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d 390 (710)
T 2xdw_A 322 ---EESKWKVL--------VPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKK 390 (710)
T ss_dssp ---CGGGCEEE--------ECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTT
T ss_pred ---Ccccceec--------cCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCC
Confidence 00000111 1121 256677788777 7888888885 556677 77878888877767766 6778
Q ss_pred CCEEEEEe----cCCeEEEEeCCCCc--ceeeec
Q 043350 489 GSRMYVGY----VSGYLQILDLDGNL--TASWIA 516 (1133)
Q Consensus 489 g~~Lasgs----~DG~I~vwd~~g~~--l~~~~~ 516 (1133)
++.|+... ..++|++||+.+.. ...+..
T Consensus 391 ~~~l~~~~ss~~~P~~i~~~d~~tg~~~~~~l~~ 424 (710)
T 2xdw_A 391 DTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFRE 424 (710)
T ss_dssp CSEEEEEEECSSCCCEEEEEETTSSSCCCEEEEE
T ss_pred CCEEEEEEeCCCCCCEEEEEECCCCccceEEeee
Confidence 87666443 45799999997533 444444
No 201
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.85 E-value=7.4e-08 Score=109.30 Aligned_cols=101 Identities=12% Similarity=0.126 Sum_probs=69.4
Q ss_pred CEEEEEECCCCeEEEEecC---------CeEEEEeCCCCeeEEEecCCcceeEEecCCCEEEEEecC--------CeEEE
Q 043350 441 RTEAMVLTADGMIWSGCTN---------GLLVQWDGNGNRVSDILHHQCAVQCFCTYGSRMYVGYVS--------GYLQI 503 (1133)
Q Consensus 441 ~V~sl~~spdg~L~sgs~D---------G~I~vWd~~g~~l~~~~~h~~~V~~fs~dg~~Lasgs~D--------G~I~v 503 (1133)
.+..+.++|+|.++++..+ ..|.+++ .+ .+..+..+ ..+.+++|||++|+.++.+ ..|++
T Consensus 172 ~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d-~~-~~~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~ 248 (347)
T 2gop_A 172 RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE-DG-KEEKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYI 248 (347)
T ss_dssp TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE-TT-EEEEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEE
T ss_pred CcccccCCCCeEEEEEecccccccccccccEEEeC-CC-ceEEeccC-cceeeECCCCCEEEEEEccccCCccccceEEE
Confidence 4567788999944445443 2455556 44 34444444 5566689999998887744 47899
Q ss_pred EeCCCCcceeeeccccCeEE-eeecccceeeecccCCeeecccc
Q 043350 504 LDLDGNLTASWIAHSSPVLK-LAVGVDHIYSLAAHGGIRGWTFT 546 (1133)
Q Consensus 504 wd~~g~~l~~~~~H~~~V~~-l~fs~~~L~S~s~Dg~I~lW~l~ 546 (1133)
|| .++......+|...+.. +.|++..+++++.++.+++| +.
T Consensus 249 ~d-~~~~~~l~~~~~~~~~~~~~~sdg~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 249 YD-GKEVMGILDEVDRGVGQAKIKDGKVYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp EC-SSCEEESSTTCCSEEEEEEEETTEEEEEEEETTEEEEE-EE
T ss_pred EC-CCceEeccccCCcccCCccEEcCcEEEEEecCCcEEEE-Ec
Confidence 99 66554444566777876 88873388888999999999 87
No 202
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.84 E-value=2.1e-07 Score=101.33 Aligned_cols=235 Identities=8% Similarity=-0.038 Sum_probs=140.0
Q ss_pred CeEEEEEeCCCCEEE-EEeCCCeEEEEeCCCCCCCCCCCccccccc-ccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCC
Q 043350 214 PTMCLMVDCGNRLVW-TGHKDGKIRSWKMDQTLDDANNPFKEGLSW-QAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWE 291 (1133)
Q Consensus 214 ~V~~la~spd~~~La-Sgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l-~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~ 291 (1133)
...++++++++++.+ +.+.++.|.+|+... .....+ ..+...+.+|+++++|+|+.+..++.|.+||..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~---------~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~ 95 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGS---------TGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAG 95 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC--------------EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTT
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCC---------cccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCC
Confidence 568999999998777 447789999999765 111111 233456789999999994444448899999987
Q ss_pred CCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEec
Q 043350 292 SIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNI 371 (1133)
Q Consensus 292 ~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~ 371 (1133)
+..... +...+. ..+ ..+....++.+.+-...++.|.+||..+.........
T Consensus 96 ~~~~~~-~~~~~~--------------------------~~p-~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~ 147 (270)
T 1rwi_B 96 SNNQTV-LPFDGL--------------------------NYP-EGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT 147 (270)
T ss_dssp CSCCEE-CCCCSC--------------------------SSE-EEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC
T ss_pred CceEee-eecCCc--------------------------CCC-cceEECCCCCEEEEECCCCEEEEEECCCceeEeeccc
Confidence 632111 100000 000 0111112233222224567788887655443322222
Q ss_pred CCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC
Q 043350 372 EGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG 451 (1133)
Q Consensus 372 h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg 451 (1133)
.......+++++++.+ +++...++.|..++...... .. .. ......+..++++++|
T Consensus 148 ~~~~p~~i~~~~~g~l---------~v~~~~~~~i~~~~~~~~~~--------~~--~~-----~~~~~~p~~i~~d~~g 203 (270)
T 1rwi_B 148 GLNDPDGVAVDNSGNV---------YVTDTDNNRVVKLEAESNNQ--------VV--LP-----FTDITAPWGIAVDEAG 203 (270)
T ss_dssp SCCSCCCEEECTTCCE---------EEEEGGGTEEEEECTTTCCE--------EE--CC-----CSSCCSEEEEEECTTC
T ss_pred cCCCceeEEEeCCCCE---------EEEECCCCEEEEEecCCCce--------Ee--ec-----ccCCCCceEEEECCCC
Confidence 2335678999998887 77766666665333221110 00 00 1122567889999999
Q ss_pred -eEEEEecCCeEEEEeCCCCeeEEEec-CCcceeE--EecCCCEEEEEecCCeEEEEeCCCC
Q 043350 452 -MIWSGCTNGLLVQWDGNGNRVSDILH-HQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGN 509 (1133)
Q Consensus 452 -~L~sgs~DG~I~vWd~~g~~l~~~~~-h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~ 509 (1133)
.+++...++.|.+|+.++.....+.. +...+.+ ++++|+.+++...+++|++|++..+
T Consensus 204 ~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 204 TVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp CEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred CEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 55555568899999997754444332 3234555 8899998888889999999998743
No 203
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=98.84 E-value=5.2e-08 Score=106.22 Aligned_cols=133 Identities=12% Similarity=0.020 Sum_probs=77.0
Q ss_pred EEEEEEcCCCCCCch---------hhhhhhcCCCCCccEEEEeeeecccccchhhhhhhhhhhcCCCCcchhhHHHHHhh
Q 043350 575 LVGTWNVGQGRASHE---------SLLSWLGSVSSDVGIVAVGLQEVEMGAGFLAMSAAKETVGLEGSAIGQWWQDTIGK 645 (1133)
Q Consensus 575 ~v~TWNv~~~~~~~~---------~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 645 (1133)
.+.|||+.+..+... .+.++|.. .+||| |||||++.. +.+.|.+
T Consensus 2 rv~t~Ni~~~~~~~~~~~w~~r~~~i~~~i~~--~~~DI--v~LQEv~~~-----------------------~~~~l~~ 54 (257)
T 3l1w_A 2 KIATYNVRVDTEYDQDWQWSFRKEAVCQLINF--HDWSL--CCIQEVRPN-----------------------QVRDLKA 54 (257)
T ss_dssp EEEEEECCCCCGGGGGGSHHHHHHHHHHHHHH--HCCSE--EEEEEECHH-----------------------HHHHHHH
T ss_pred EEEEEEeccCCCCccccChHHHHHHHHHHHHH--cCCCE--EEEeCCCHH-----------------------HHHHHHh
Confidence 578999987654321 24455542 35676 689998621 1223434
Q ss_pred hcCCCCcEEEEeeee-cceEEEEEEEecccccccCceee--c----ccccccccccccceeEEEEEEEc--CeEEEEEec
Q 043350 646 ALDEGTTFERMGSRQ-LAGLLISFWVRKNLRTHVGDVDA--A----AVPCGFGRAIGNKGGVGLRIRVY--DRTICFVNC 716 (1133)
Q Consensus 646 ~l~~~~~y~~v~~~~-l~g~~l~v~~~~~~~~~i~~v~~--~----~v~~G~~~~~gnKG~v~~r~~~~--~~~~~fvn~ 716 (1133)
.| ++.|....... -.|-.+++|.|++..+.+..-.. . ..+.|. +...+++++.++|... +..+.++|+
T Consensus 55 ~l--~y~~~~~~~~~~~~~~g~ail~r~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~g~~~~v~~~ 131 (257)
T 3l1w_A 55 YT--TFTCLSAEREGDGQGEGLAILYNEQKVQAIDTGYFWLSETPQQPSIHP-EAGCPRIALWGLFKETTQNTPFLVINV 131 (257)
T ss_dssp HS--SSEEEEEESSSSSCSCEEEEEECTTTEEEEEEEEEESSSSTTSSCCCT-TCSSCCEEEEEEEEETTCSSCEEEEEE
T ss_pred cC--CCcEEEecccCCCCCceEEEEEEcceEEEEecCeEECcCCCCcccccc-cccccceeEEEEEEEcCCCCEEEEEEe
Confidence 44 45443332211 34556677888663332211111 1 011121 2345788999999884 578999999
Q ss_pred ccccChHHHHHHHHHHHHHHHhC
Q 043350 717 HLAAHLEAVNRRNADYDHIYRNM 739 (1133)
Q Consensus 717 Hlaa~~~~~~~Rn~d~~~i~~~~ 739 (1133)
||.+... +.|.+++..|++.+
T Consensus 132 Hl~~~~~--~~r~~q~~~l~~~i 152 (257)
T 3l1w_A 132 HLDHISA--HARLAGMTVILEEL 152 (257)
T ss_dssp ECCSSCH--HHHHHHHHHHHHHT
T ss_pred CCCCCCH--HHHHHHHHHHHHHH
Confidence 9988743 46778888887765
No 204
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=98.83 E-value=2.8e-08 Score=109.03 Aligned_cols=134 Identities=18% Similarity=0.210 Sum_probs=74.8
Q ss_pred ceEEEEEEcCCCCCCc---------hhhhhhhcCCCCCccEEEEeeeecccccchhhhhhhhhhhcCCCCcchhhHHHHH
Q 043350 573 RILVGTWNVGQGRASH---------ESLLSWLGSVSSDVGIVAVGLQEVEMGAGFLAMSAAKETVGLEGSAIGQWWQDTI 643 (1133)
Q Consensus 573 rI~v~TWNv~~~~~~~---------~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 643 (1133)
.+.+.|||+.+..+.. +.+.++|.. .+||| |+|||+... ..+.|
T Consensus 3 ~l~v~t~Ni~~~~~~~~~~~~~~r~~~i~~~i~~--~~~DI--v~LQEv~~~-----------------------~~~~l 55 (267)
T 3g6s_A 3 DVRWATFNIRYDNPQDSLNNWQYRKDRVCQFIKD--HELDI--VGMQEVLHN-----------------------QFQDL 55 (267)
T ss_dssp EEEEEEEECCCCCGGGGGGSGGGTHHHHHHHHHH--TTCSE--EEEESBCHH-----------------------HHHHH
T ss_pred cEEEEEEEeccCCCCccccCHHHHHHHHHHHHHH--cCCCE--EEEecCCHH-----------------------HHHHH
Confidence 4678899998664321 234455543 35775 689999621 12334
Q ss_pred hhhcCCCCcEEEEeeee----cceEEEEEEEecccccccCcee--ecc----cc-cccccccccceeEEEEEEE--cCeE
Q 043350 644 GKALDEGTTFERMGSRQ----LAGLLISFWVRKNLRTHVGDVD--AAA----VP-CGFGRAIGNKGGVGLRIRV--YDRT 710 (1133)
Q Consensus 644 ~~~l~~~~~y~~v~~~~----l~g~~l~v~~~~~~~~~i~~v~--~~~----v~-~G~~~~~gnKG~v~~r~~~--~~~~ 710 (1133)
.+.| .++.| +.... -.|-.+.+|.|++-.+-+..-. ... .+ .|+ +...+++++.++|.. .+..
T Consensus 56 ~~~l-~~y~~--~~~~~~~~~~~g~~~ail~~~s~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~R~~~~~~~~~~~~~~~ 131 (267)
T 3g6s_A 56 RAGL-PEYDG--IGVGRDDGKTAGEYAPLFYRKDKYEVLDSNTFWLAENPDSVGMMGW-DAVCVRIATWAKFKDKATGKI 131 (267)
T ss_dssp HHHC-TTEEE--ECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSCTTSTTCCCT-TCSSCCEEEEEEEEETTTCCE
T ss_pred HHhc-cCCcE--EEecCCCCCcCCceeEEEEEccceEEEecccEecCCCCCccccccc-cccCcceEEEEEEEEcCCCCE
Confidence 4455 33334 33211 2344466777766433221111 110 01 121 123477899999985 5679
Q ss_pred EEEEecccccChHHHHHHHHHHHHHHHhC
Q 043350 711 ICFVNCHLAAHLEAVNRRNADYDHIYRNM 739 (1133)
Q Consensus 711 ~~fvn~Hlaa~~~~~~~Rn~d~~~i~~~~ 739 (1133)
|+++|+||.+.. .+.|.+....|.+.+
T Consensus 132 ~~v~~~Hl~~~~--~~~R~~q~~~l~~~l 158 (267)
T 3g6s_A 132 FMAVNTHFDHVG--EEARRQSALLIIRKI 158 (267)
T ss_dssp EEEEEEECCSSC--HHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCC--HHHHHHHHHHHHHHH
Confidence 999999998764 345666677776654
No 205
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=98.82 E-value=5.2e-08 Score=110.06 Aligned_cols=47 Identities=17% Similarity=0.143 Sum_probs=39.9
Q ss_pred ccccceeEEEEEEEcCeEEEEEecccccCh------HHHHHHHHHHHHHHHhC
Q 043350 693 AIGNKGGVGLRIRVYDRTICFVNCHLAAHL------EAVNRRNADYDHIYRNM 739 (1133)
Q Consensus 693 ~~gnKG~v~~r~~~~~~~~~fvn~Hlaa~~------~~~~~Rn~d~~~i~~~~ 739 (1133)
...+||.+.+++.+.+..|.++|+||.+.. .....|.+++..|.+.+
T Consensus 146 ~~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i 198 (317)
T 3i41_A 146 NDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFV 198 (317)
T ss_dssp GGBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHH
T ss_pred cccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHH
Confidence 357999999999999999999999998864 35778888888887765
No 206
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.79 E-value=1.4e-07 Score=118.55 Aligned_cols=278 Identities=9% Similarity=-0.087 Sum_probs=150.0
Q ss_pred CCCCEEEEEeCCC---eEEEEeCCCCCCCCCCCcccccc----cccCCCCeEEEEEeeCCc-EE-----EEeCCCcEEEE
Q 043350 222 CGNRLVWTGHKDG---KIRSWKMDQTLDDANNPFKEGLS----WQAHRGPVLAMIFSSQGD-LW-----SGGEGGVIKIW 288 (1133)
Q Consensus 222 pd~~~LaSgs~Dg---~V~vWd~~~~~~~~~~~~~~~~~----l~gH~~~V~sl~fsp~g~-L~-----Sgs~DgtI~iW 288 (1133)
|+|++++....++ .-.+|....... . .+.+.. -.+|...+.+++|||||+ |+ +|+.+.+|++|
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~---~-~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~ 152 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESG---Q-EKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVI 152 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTS---C-CEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCC---C-cEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEE
Confidence 6888887766654 355665442111 0 022211 135666899999999999 66 44556789999
Q ss_pred eCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCce--EEE-ecCCCceeEeecCCCce
Q 043350 289 PWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARA--RVW-CAQPLSFSLWDARSKEL 365 (1133)
Q Consensus 289 dl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i--~vw-ss~d~~I~lWD~~tg~~ 365 (1133)
|+.++............ ...+.+.+++..++..+.+... ... ......|.+|++.++..
T Consensus 153 dl~tg~~~~~~~~~~~~------------------~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~ 214 (695)
T 2bkl_A 153 DVDSGEWSKVDVIEGGK------------------YATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS 214 (695)
T ss_dssp ETTTCCBCSSCCBSCCT------------------TCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG
T ss_pred ECCCCCCcCCcccCccc------------------ccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCch
Confidence 99874321000000000 0111111223323322221100 000 00122388999987762
Q ss_pred --eEEEe--cCCcceeEEEeCCCCCccccccceEEEEeeCCCC----ccccccccccceeeccCCceEEEEEecCCcccC
Q 043350 366 --LKVFN--IEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKE----KPHGFLQRSRNAIMGAADAVRRVATRGAGAFVD 437 (1133)
Q Consensus 366 --l~~~~--~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg----~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~ 437 (1133)
...+. .+...+..+.+||++++ |+.++.++ .+..++. .......+..
T Consensus 215 ~~~lv~~~~~~~~~~~~~~~SpDG~~---------l~~~~~~~~~~~~l~~~~~--------~~~~~~~l~~-------- 269 (695)
T 2bkl_A 215 KDTVVHERTGDPTTFLQSDLSRDGKY---------LFVYILRGWSENDVYWKRP--------GEKDFRLLVK-------- 269 (695)
T ss_dssp GCEEEECCCCCTTCEEEEEECTTSCC---------EEEEEEETTTEEEEEEECT--------TCSSCEEEEE--------
T ss_pred hceEEEecCCCCEEEEEEEECCCCCE---------EEEEEeCCCCceEEEEEcC--------CCCceEEeec--------
Confidence 23333 34456789999999998 77766555 2211110 1111222221
Q ss_pred CCCCEEEEEECCCC-eEEEEe---cCCeEEEEeCCC-Ce--eEEEecC--CcceeE--EecCCCEEEEEecCCeEEEEeC
Q 043350 438 DTKRTEAMVLTADG-MIWSGC---TNGLLVQWDGNG-NR--VSDILHH--QCAVQC--FCTYGSRMYVGYVSGYLQILDL 506 (1133)
Q Consensus 438 h~~~V~sl~~spdg-~L~sgs---~DG~I~vWd~~g-~~--l~~~~~h--~~~V~~--fs~dg~~Lasgs~DG~I~vwd~ 506 (1133)
+...+....+ ++| .++.+. .++.|.+|++++ .. ...+..+ ...+.. ++ ++.++++...|+..+||.+
T Consensus 270 ~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~ 347 (695)
T 2bkl_A 270 GVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVA 347 (695)
T ss_dssp CSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred CCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence 2222333334 444 344433 368999999944 32 3444443 334554 44 6667888888998888755
Q ss_pred --CCCcceeeecc-ccCeEEeeec--cccee----eecccCCeeeccccCC
Q 043350 507 --DGNLTASWIAH-SSPVLKLAVG--VDHIY----SLAAHGGIRGWTFTSP 548 (1133)
Q Consensus 507 --~g~~l~~~~~H-~~~V~~l~fs--~~~L~----S~s~Dg~I~lW~l~s~ 548 (1133)
.++....+..+ .+.|..++++ ++.|+ +....++|.+||+.+.
T Consensus 348 ~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 348 TLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp ETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred eCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 46655566555 5667778887 55666 4455688999998654
No 207
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.79 E-value=2.7e-07 Score=116.82 Aligned_cols=158 Identities=12% Similarity=0.008 Sum_probs=90.3
Q ss_pred cCCCCCEEEEecCCCe---EEeccCCCCC--CCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE-e--cC----CcE
Q 043350 111 FQPMVEFIGSGGGTGI---FKVPSRAAVH--PGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA-G--QE----CGV 177 (1133)
Q Consensus 111 ~~p~g~~lasgs~dg~---irlW~~~~~~--~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla-s--~D----g~V 177 (1133)
..|+|++++-...++. -.+|...... .+.. ..-+.+-...+ .....+..++ ||||+++| + .+ .+|
T Consensus 114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~lld~~~l~~-~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i 191 (741)
T 1yr2_A 114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKG-RVLLDPNTWAK-DGATALDAWAASDDGRLLAYSVQDGGSDWRTV 191 (741)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCC-EEEECGGGCC-----EEEEEEEECTTSSEEEEEEEETTCSEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCC-EEEECHHHhcc-CCCEEEEeEEECCCCCEEEEEEcCCCCceEEE
Confidence 3589999887654443 4566543210 1222 22111111000 0001577777 99999999 2 22 369
Q ss_pred EEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCe--------------EEEEeCCC
Q 043350 178 RFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGK--------------IRSWKMDQ 243 (1133)
Q Consensus 178 rvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~--------------V~vWd~~~ 243 (1133)
++||+.+.... . ...+...+..++|+|| +.|+.++.|+. |++|++.+
T Consensus 192 ~v~dl~tg~~~----------------~--~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt 252 (741)
T 1yr2_A 192 KFVGVADGKPL----------------A--DELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGT 252 (741)
T ss_dssp EEEETTTCCEE----------------E--EEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTS
T ss_pred EEEECCCCCCC----------------C--ccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCC
Confidence 99999874221 0 0011111346789999 99988887654 88999875
Q ss_pred CCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCC-----cEEEEeCCCC
Q 043350 244 TLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGG-----VIKIWPWESI 293 (1133)
Q Consensus 244 ~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~Dg-----tI~iWdl~~~ 293 (1133)
+.. .-..+.....|...+.++.|+|+|+ |+..+.++ .|.+||+.+.
T Consensus 253 ~~~----~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 253 PQS----ADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp CGG----GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred Cch----hCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence 211 0012222233444689999999999 77666443 7888988653
No 208
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.77 E-value=2.3e-06 Score=96.87 Aligned_cols=239 Identities=9% Similarity=-0.035 Sum_probs=144.1
Q ss_pred eEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCC
Q 043350 215 TMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESI 293 (1133)
Q Consensus 215 V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~ 293 (1133)
...++++ ++++.++...++.|.+||..+. +.+..+. .......|+++++|. .++...++.|.+||..+.
T Consensus 46 ~~~i~~~-~~~lyv~~~~~~~v~viD~~t~--------~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~ 115 (328)
T 3dsm_A 46 AQSMVIR-DGIGWIVVNNSHVIFAIDINTF--------KEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTY 115 (328)
T ss_dssp EEEEEEE-TTEEEEEEGGGTEEEEEETTTC--------CEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTT
T ss_pred ceEEEEE-CCEEEEEEcCCCEEEEEECccc--------EEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCC
Confidence 4667764 4556666667899999999861 3333443 346788999999989 555558999999999763
Q ss_pred ce--eeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEec-CCCceeEeecCCCceeEEEe
Q 043350 294 EK--SLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCA-QPLSFSLWDARSKELLKVFN 370 (1133)
Q Consensus 294 ~~--~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss-~d~~I~lWD~~tg~~l~~~~ 370 (1133)
.. .+....... ....+....+ .++.+.+-+. .++.|.+||+.+++.+..+.
T Consensus 116 ~~~~~i~~g~~~~------------------------~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~ 169 (328)
T 3dsm_A 116 EITGYIECPDMDM------------------------ESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELT 169 (328)
T ss_dssp EEEEEEECTTCCT------------------------TTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred eEEEEEEcCCccc------------------------cCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence 21 111111000 0001222222 2333333334 47899999999999888887
Q ss_pred cCCcceeEEEeCCCCCccccccceEEEEeeCCC----------CccccccccccceeeccCCceE-EEEEecCCcccCCC
Q 043350 371 IEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKK----------EKPHGFLQRSRNAIMGAADAVR-RVATRGAGAFVDDT 439 (1133)
Q Consensus 371 ~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~D----------g~i~~~~~~~~~~~~~~~~~V~-~v~~~p~g~~~~h~ 439 (1133)
... ....+.++|++++ ++++..+ +.+..++.. ...+. .+... ..
T Consensus 170 ~g~-~p~~i~~~~dG~l---------~v~~~~~~~~~~~~~~~~~v~~id~~--------t~~v~~~~~~~-------~g 224 (328)
T 3dsm_A 170 IGI-QPTSLVMDKYNKM---------WTITDGGYEGSPYGYEAPSLYRIDAE--------TFTVEKQFKFK-------LG 224 (328)
T ss_dssp CSS-CBCCCEECTTSEE---------EEEBCCBCTTCSSCBCCCEEEEEETT--------TTEEEEEEECC-------TT
T ss_pred cCC-CccceEEcCCCCE---------EEEECCCccCCccccCCceEEEEECC--------CCeEEEEEecC-------CC
Confidence 543 3467888998877 6666543 334322221 11222 11111 12
Q ss_pred CCEEEEEECCCC-eEEEEecCCeEEEEeCCC-CeeE-E-EecCCcceeE--EecCCCEEEEE-----ecCCeEEEEeCCC
Q 043350 440 KRTEAMVLTADG-MIWSGCTNGLLVQWDGNG-NRVS-D-ILHHQCAVQC--FCTYGSRMYVG-----YVSGYLQILDLDG 508 (1133)
Q Consensus 440 ~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g-~~l~-~-~~~h~~~V~~--fs~dg~~Lasg-----s~DG~I~vwd~~g 508 (1133)
.....++++|++ .|+++.. .|.+||..+ +... . +..+.....+ ++|++..|+++ ..++.|.+||.++
T Consensus 225 ~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g 302 (328)
T 3dsm_A 225 DWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQG 302 (328)
T ss_dssp CCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTC
T ss_pred CCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCC
Confidence 357889999988 7777654 899999944 4321 1 1111233444 88855555544 4789999999999
Q ss_pred Ccceeeec
Q 043350 509 NLTASWIA 516 (1133)
Q Consensus 509 ~~l~~~~~ 516 (1133)
+++.++..
T Consensus 303 ~~~~~i~~ 310 (328)
T 3dsm_A 303 KLIDEFYV 310 (328)
T ss_dssp CEEEEEEE
T ss_pred CEEEEEEe
Confidence 88777654
No 209
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.76 E-value=2.8e-07 Score=101.81 Aligned_cols=207 Identities=9% Similarity=-0.018 Sum_probs=136.5
Q ss_pred CCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEEecCCcEEEeeCCCCCCcCcCC
Q 043350 114 MVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWAGQECGVRFWNLEDSYEPGAGI 192 (1133)
Q Consensus 114 ~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~llas~Dg~VrvWdl~~~~~~~~gh 192 (1133)
.+++|++++.++.|.+||.++ |+. +.++..+.. ..+.++. .++|+++++.++.|..||..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~t---G~~-~w~~~~~~~------~~~~~~~~~pdG~ilvs~~~~V~~~d~~G~-~~W--- 69 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDT---KEI-VWEYPLEKG------WECNSVAATKAGEILFSYSKGAKMITRDGR-ELW--- 69 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTT---TEE-EEEEECCTT------CCCCEEEECTTSCEEEECBSEEEEECTTSC-EEE---
T ss_pred CCcEEEeeCCCCEEEEEECCC---CeE-EEEeCCCcc------CCCcCeEECCCCCEEEeCCCCEEEECCCCC-EEE---
Confidence 357899999999999999853 776 677766541 1456677 8999999977889999998432 111
Q ss_pred CccccCCCCCCCceeeccC-CCCeEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCCCCCCCCcccccccc------cCCCC
Q 043350 193 GGRVRRGDEDAAPFYESAN-TSPTMCLMVDCGNRLVWTGHK-DGKIRSWKMDQTLDDANNPFKEGLSWQ------AHRGP 264 (1133)
Q Consensus 193 ~~~v~~g~~~~~~~~~~~h-~s~V~~la~spd~~~LaSgs~-Dg~V~vWd~~~~~~~~~~~~~~~~~l~------gH~~~ 264 (1133)
....+ ...+.++.+.++|++|++.+. ++.|..++.++ +.+..+. ++...
T Consensus 70 --------------~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~G---------k~l~~~~~~~~~~~~~~~ 126 (276)
T 3no2_A 70 --------------NIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKG---------EVLSKTEFETGIERPHAQ 126 (276)
T ss_dssp --------------EEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTS---------CEEEEEEECCSCSSGGGS
T ss_pred --------------EEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCC---------CEEEEEeccCCCCccccc
Confidence 11111 235778899999999999887 77787777755 3222221 23335
Q ss_pred eEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCC
Q 043350 265 VLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHA 343 (1133)
Q Consensus 265 V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~ 343 (1133)
...+++.++|+ |++.+.++.|.+||.+ +... |.+........ .....++
T Consensus 127 ~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~-------------------w~~~~~~~~~~----------~~~~~~g 176 (276)
T 3no2_A 127 FRQINKNKKGNYLVPLFATSEVREIAPN-GQLL-------------------NSVKLSGTPFS----------SAFLDNG 176 (276)
T ss_dssp CSCCEECTTSCEEEEETTTTEEEEECTT-SCEE-------------------EEEECSSCCCE----------EEECTTS
T ss_pred ccCceECCCCCEEEEecCCCEEEEECCC-CCEE-------------------EEEECCCCccc----------eeEcCCC
Confidence 56678889999 9999999999999986 3222 22221100000 1111223
Q ss_pred ceEEEecCCCceeEeecCCCceeEEEecCC------cceeEEEeCCCCCc
Q 043350 344 RARVWCAQPLSFSLWDARSKELLKVFNIEG------HIENRVDTQSVQDQ 387 (1133)
Q Consensus 344 ~i~vwss~d~~I~lWD~~tg~~l~~~~~h~------~~v~~l~~sp~g~~ 387 (1133)
.+.+....++.|..+|..+|+.+..+.... ..+..+...+++..
T Consensus 177 ~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i 226 (276)
T 3no2_A 177 DCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGL 226 (276)
T ss_dssp CEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCE
T ss_pred CEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCE
Confidence 333333556778999999999998886432 12667788888877
No 210
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.75 E-value=8.2e-06 Score=99.25 Aligned_cols=314 Identities=11% Similarity=0.048 Sum_probs=189.2
Q ss_pred CCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ecCCcEEEeeCC--CCC
Q 043350 112 QPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQECGVRFWNLE--DSY 186 (1133)
Q Consensus 112 ~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~Dg~VrvWdl~--~~~ 186 (1133)
+|.+.++++...++.|.++|..+ ++. +.++... ..+..+. ++||+++. +.|+.|.+||+. +.
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t---~~v-~~~i~~g--------~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~- 230 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGST---YEI-KTVLDTG--------YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP- 230 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTT---CCE-EEEEECS--------SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC-
T ss_pred CCCceEEEEeCCCCeEEEEECCC---CeE-EEEEeCC--------CCccceEECCCCCEEEEEcCCCeEEEEECCCCCC-
Confidence 55667888889999999999873 333 5555432 2456777 99998766 778999999985 22
Q ss_pred CcCcCCCccccCCCCCCCceeeccCCCCeEEEEEe----CCCCEEEEEeC-CCeEEEEeCCCCCCCCCCCcccccccc--
Q 043350 187 EPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVD----CGNRLVWTGHK-DGKIRSWKMDQTLDDANNPFKEGLSWQ-- 259 (1133)
Q Consensus 187 ~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~s----pd~~~LaSgs~-Dg~V~vWd~~~~~~~~~~~~~~~~~l~-- 259 (1133)
... ..+. ... ....++|+ |+|++++++.. +++|.|+|..+. +.+..+.
T Consensus 231 ~~v---------------~~i~-~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~--------~~~~~i~~~ 285 (567)
T 1qks_A 231 TTV---------------AEIK-IGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL--------EPKKIQSTR 285 (567)
T ss_dssp CEE---------------EEEE-CCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC--------CEEEEEECC
T ss_pred cEe---------------EEEe-cCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC--------cEEEEEecc
Confidence 110 0111 111 34789999 69998877665 599999997651 2222211
Q ss_pred --------cCCC-CeEEEEEeeCCc--EEEEeCCCcEEEEeCCCC-------------ceeeEeCCCCceEEEEee-cce
Q 043350 260 --------AHRG-PVLAMIFSSQGD--LWSGGEGGVIKIWPWESI-------------EKSLSLKPEEKHMAALLV-ERS 314 (1133)
Q Consensus 260 --------gH~~-~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~-------------~~~l~~~~~~~~l~s~~~-d~s 314 (1133)
.|.. .|..+.+++++. +++...+|.|.++|.... ...+.+.+++++++++.. +..
T Consensus 286 ~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~ 365 (567)
T 1qks_A 286 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK 365 (567)
T ss_dssp EECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTE
T ss_pred ccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCe
Confidence 1323 688899998877 777778899999998652 234567888887766543 333
Q ss_pred --EEEccCceeeecc---ccCCCC-CeEEEEecCCceEEEe---cCCCceeEeecCC-------CceeEEEecCCcceeE
Q 043350 315 --FIDLRAQVTVNGA---CSISST-EIKCMLSDHARARVWC---AQPLSFSLWDARS-------KELLKVFNIEGHIENR 378 (1133)
Q Consensus 315 --~~d~~~~~~v~~~---~~~~~~-~~~~l~S~d~~i~vws---s~d~~I~lWD~~t-------g~~l~~~~~h~~~v~~ 378 (1133)
++|..+...+..+ ...+.+ ....+...++ -.+|. ..++.|.++|..+ .+.++++...+..-..
T Consensus 366 V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~-g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~ 444 (567)
T 1qks_A 366 LVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTF-GPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLF 444 (567)
T ss_dssp EEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTT-EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCC
T ss_pred EEEEECCCCcEEEEEeccCcCCCCccceeeECCCC-CcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEE
Confidence 7787766533222 111222 1222333322 23443 2568999999987 6678888776544345
Q ss_pred EEeCCCCCccccccceEEEEeeCC-------CCccccccccccceeeccCCceEEEEEecCC---cccCCCCCEEEEEEC
Q 043350 379 VDTQSVQDQPVEDEMKVKFVSSNK-------KEKPHGFLQRSRNAIMGAADAVRRVATRGAG---AFVDDTKRTEAMVLT 448 (1133)
Q Consensus 379 l~~sp~g~~~~e~e~~v~lasgs~-------Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g---~~~~h~~~V~sl~~s 448 (1133)
+..+|++++ +..... .++|..++..... ..+....+..+ +-+ .+......+..+.|+
T Consensus 445 i~~~p~~~~---------l~v~~~~~~~~~~~~~v~v~d~~~~~-~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 511 (567)
T 1qks_A 445 IKTHPNSQY---------LYVDATLNPEAEISGSVAVFDIKAMT-GDGSDPEFKTL---PIAEWAGITEGQPRVVQGEFN 511 (567)
T ss_dssp EECCTTCSE---------EEEECTTCSSHHHHTCEEEEEGGGCC-CSSSCCCEEEE---CHHHHHTCCSSCCEEEEEEEC
T ss_pred EEeCCCCCe---------EEEecCCCCCcccCceEEEEECCccc-ccccCCCcEEe---ccccccccCCCCcceEeeeEC
Confidence 788999988 666442 1244323222110 00001011111 100 011224568888899
Q ss_pred CCC-eEEEEe-----cCCeEEEEeC-CCCeeEEEec
Q 043350 449 ADG-MIWSGC-----TNGLLVQWDG-NGNRVSDILH 477 (1133)
Q Consensus 449 pdg-~L~sgs-----~DG~I~vWd~-~g~~l~~~~~ 477 (1133)
++| .++.+. .++.|.++|. +++.+..+..
T Consensus 512 ~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 512 KDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp TTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred CCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 999 666653 3789999998 4466666653
No 211
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.74 E-value=6.7e-07 Score=112.57 Aligned_cols=251 Identities=11% Similarity=0.032 Sum_probs=137.0
Q ss_pred cCCCCeEEEEEeeCCc-EEEEeCCC-----cEEEEeCCCCcee-eEeCCCCceEEEEeecceEEEccCceeeeccccCCC
Q 043350 260 AHRGPVLAMIFSSQGD-LWSGGEGG-----VIKIWPWESIEKS-LSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISS 332 (1133)
Q Consensus 260 gH~~~V~sl~fsp~g~-L~Sgs~Dg-----tI~iWdl~~~~~~-l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~ 332 (1133)
+|...+.+++|||||+ |+.++.++ +|++||+.++... ...... .+..+.+.++
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~--------------------~~~~~~wspD 181 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV--------------------KFSCMAWTHD 181 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE--------------------CSCCEEECTT
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc--------------------ccceEEEEeC
Confidence 4555789999999999 77665433 8999999874211 000000 0011122233
Q ss_pred CCeEEEEecCCce-----EEE-ecCCCceeEeecCCCce--eEEEec--CCcceeEEEeCCCCCccccccceEEEEeeCC
Q 043350 333 TEIKCMLSDHARA-----RVW-CAQPLSFSLWDARSKEL--LKVFNI--EGHIENRVDTQSVQDQPVEDEMKVKFVSSNK 402 (1133)
Q Consensus 333 ~~~~~l~S~d~~i-----~vw-ss~d~~I~lWD~~tg~~--l~~~~~--h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~ 402 (1133)
+..++..+.+... ... ......|.+|++.+++. ...+.. +...+..+.++|++++ |+.++.
T Consensus 182 g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~---------l~~~~~ 252 (710)
T 2xdw_A 182 GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY---------VLLSIR 252 (710)
T ss_dssp SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE---------EEEEEE
T ss_pred CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE---------EEEEEE
Confidence 3333333332110 000 00123488899987763 233333 3445778999999998 766654
Q ss_pred C-----Cccccccccccc-eeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEec----CCeEEEEeCCC-C
Q 043350 403 K-----EKPHGFLQRSRN-AIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCT----NGLLVQWDGNG-N 470 (1133)
Q Consensus 403 D-----g~i~~~~~~~~~-~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~----DG~I~vWd~~g-~ 470 (1133)
. ..+..++..... ...+ ......+ ..+...+.. .++++| .|+..+. ++.|.+|++.+ .
T Consensus 253 ~~~~~~~~l~~~d~~~~~~~~~~-~~~~~~l--------~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 322 (710)
T 2xdw_A 253 EGCDPVNRLWYCDLQQESNGITG-ILKWVKL--------IDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE 322 (710)
T ss_dssp CSSSSCCEEEEEEGGGSSSSSCS-SCCCEEE--------ECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred ccCCCccEEEEEECcccccccCC-ccceEEe--------eCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 2 223211111000 0000 0011121 122222333 366777 5555443 34699999954 2
Q ss_pred --eeEEEecCCc--ceeE--EecCCCEEEEEecCCe--EEEEeC-CCCcceeeeccccCeEEeeec--cccee-e---ec
Q 043350 471 --RVSDILHHQC--AVQC--FCTYGSRMYVGYVSGY--LQILDL-DGNLTASWIAHSSPVLKLAVG--VDHIY-S---LA 535 (1133)
Q Consensus 471 --~l~~~~~h~~--~V~~--fs~dg~~Lasgs~DG~--I~vwd~-~g~~l~~~~~H~~~V~~l~fs--~~~L~-S---~s 535 (1133)
....+..|.. .+.. +++++.++++...|+. |++|++ .|+.+..+..|.+.|..+.++ ++.|+ + ..
T Consensus 323 ~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~ 402 (710)
T 2xdw_A 323 ESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFL 402 (710)
T ss_dssp GGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSS
T ss_pred cccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCC
Confidence 3455655544 4554 6667778888888884 566787 567677777788888888887 44444 3 33
Q ss_pred ccCCeeeccccCCC
Q 043350 536 AHGGIRGWTFTSPS 549 (1133)
Q Consensus 536 ~Dg~I~lW~l~s~~ 549 (1133)
..++|..||+.+..
T Consensus 403 ~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 403 SPGIIYHCDLTKEE 416 (710)
T ss_dssp CCCEEEEEETTSSS
T ss_pred CCCEEEEEECCCCc
Confidence 45779999986643
No 212
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.73 E-value=1.2e-05 Score=88.49 Aligned_cols=272 Identities=11% Similarity=0.074 Sum_probs=159.9
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEe
Q 043350 211 NTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWP 289 (1133)
Q Consensus 211 h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWd 289 (1133)
....+.++++++++++.++...++.|.+|+... .. .. ..+..+...+.+|++.++|. .++...++.|..||
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~-~~------~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d 89 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQSG-RI------KE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLS 89 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE------EE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCCC-ce------EE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEEC
Confidence 345789999999999888777789999999773 11 11 12233446789999999999 55555578899998
Q ss_pred CCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEE-
Q 043350 290 WESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKV- 368 (1133)
Q Consensus 290 l~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~- 368 (1133)
.......+........ .. .+....++.+.+....++.|..||.. ++....
T Consensus 90 ~~g~~~~~~~~~~~~~------------------~~----------~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~ 140 (300)
T 2qc5_A 90 KKGGFTEYPLPQPDSG------------------PY----------GITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYD 140 (300)
T ss_dssp TTSCEEEEECSSTTCC------------------EE----------EEEECSTTCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred CCCCeEEecCCCCCCC------------------Cc----------cceECCCCCEEEEccCCCeEEEECCC-CCEEEcc
Confidence 7632222211111110 00 01111223322222446678888876 554422
Q ss_pred EecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEEC
Q 043350 369 FNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLT 448 (1133)
Q Consensus 369 ~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~s 448 (1133)
+......+..+++.+++.+ .++...++.+..++.. ..+..+ . .......+..+++.
T Consensus 141 ~~~~~~~~~~i~~d~~g~l---------~v~~~~~~~i~~~~~~---------g~~~~~--~----~~~~~~~~~~i~~d 196 (300)
T 2qc5_A 141 LPNKGSYPAFITLGSDNAL---------WFTENQNNSIGRITNT---------GKLEEY--P----LPTNAAAPVGITSG 196 (300)
T ss_dssp CSSTTCCEEEEEECTTSSE---------EEEETTTTEEEEECTT---------CCEEEE--E----CSSTTCCEEEEEEC
T ss_pred CCCCCCCceeEEECCCCCE---------EEEecCCCeEEEECCC---------CcEEEe--e----CCCCCCCcceEEEC
Confidence 2223456788999998887 7776666666433211 111111 1 11233567889999
Q ss_pred CCCeEE-EEecCCeEEEEeCCCCeeEE-EecCCcceeE--EecCCCEEEEEecCCeEEEEeCCCCccee-eeccccCeEE
Q 043350 449 ADGMIW-SGCTNGLLVQWDGNGNRVSD-ILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGNLTAS-WIAHSSPVLK 523 (1133)
Q Consensus 449 pdg~L~-sgs~DG~I~vWd~~g~~l~~-~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~~l~~-~~~H~~~V~~ 523 (1133)
++|.|+ +....+.|.+|+.++..... +..+...+.+ ++++|+..++...++.|..||..++.... +......+.+
T Consensus 197 ~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~ 276 (300)
T 2qc5_A 197 NDGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITNDNTIQEYQLQTENAEPHG 276 (300)
T ss_dssp TTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECCSTTCCCCC
T ss_pred CCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCCCcEEEEECCccCCccce
Confidence 999444 44456789999997654432 2223444555 77888855555567999999997644321 2223456788
Q ss_pred eeec-ccceeeecccCCeeecc
Q 043350 524 LAVG-VDHIYSLAAHGGIRGWT 544 (1133)
Q Consensus 524 l~fs-~~~L~S~s~Dg~I~lW~ 544 (1133)
++++ ...|+.++.. .|..++
T Consensus 277 i~~~~~g~l~v~~~~-~i~~~~ 297 (300)
T 2qc5_A 277 ITFGKDGSVWFALKC-KIGKLN 297 (300)
T ss_dssp EEECTTSCEEEECSS-EEEEEE
T ss_pred eEeCCCCCEEEEccC-ceEEeC
Confidence 8887 3344444443 555444
No 213
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.71 E-value=4.3e-06 Score=93.03 Aligned_cols=244 Identities=9% Similarity=0.064 Sum_probs=139.6
Q ss_pred CCCCeEEEEEeCCCCEEEE-------EeCCCeEEEEeCCCCCCCCCCCcccccccc-----cCCCCeEEEEEeeC-CcEE
Q 043350 211 NTSPTMCLMVDCGNRLVWT-------GHKDGKIRSWKMDQTLDDANNPFKEGLSWQ-----AHRGPVLAMIFSSQ-GDLW 277 (1133)
Q Consensus 211 h~s~V~~la~spd~~~LaS-------gs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~-----gH~~~V~sl~fsp~-g~L~ 277 (1133)
......+++|++++.++++ +..++.|.+|+...+ ....+. ++...+.+++++++ |+|+
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g---------~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~ 86 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG---------KKTVICKPEVNGYGGIPAGCQCDRDANQLF 86 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC---------CEEEEECCEETTEECCEEEEEECSSSSEEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCC---------cEEEEEecccCCCCCCCceEEEecCCCcEE
Confidence 3445689999999988887 677899999997651 112222 35577999999999 7766
Q ss_pred EEeCCCcEEEEeCCCCceee-EeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCC----
Q 043350 278 SGGEGGVIKIWPWESIEKSL-SLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQP---- 352 (1133)
Q Consensus 278 Sgs~DgtI~iWdl~~~~~~l-~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d---- 352 (1133)
.++.++.|.+||.+.....+ ........ ...+.. +....++++.+-...+
T Consensus 87 v~~~~~~l~~~d~~g~~~~~~~~~~~~~~---------------~~~~~~----------i~~d~~g~l~v~~~~~~~~~ 141 (314)
T 1pjx_A 87 VADMRLGLLVVQTDGTFEEIAKKDSEGRR---------------MQGCND----------CAFDYEGNLWITAPAGEVAP 141 (314)
T ss_dssp EEETTTEEEEEETTSCEEECCSBCTTSCB---------------CBCCCE----------EEECTTSCEEEEECBCBCTT
T ss_pred EEECCCCEEEEeCCCCEEEEEeccCCCcc---------------ccCCcC----------EEECCCCCEEEEecCccccc
Confidence 66655578889886221111 00000000 000000 1111122221111222
Q ss_pred -----------CceeEeecCCCceeEEEecCCcceeEEEeC----CCCCccccccceEEEEeeCCCCcccccccccccee
Q 043350 353 -----------LSFSLWDARSKELLKVFNIEGHIENRVDTQ----SVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAI 417 (1133)
Q Consensus 353 -----------~~I~lWD~~tg~~l~~~~~h~~~v~~l~~s----p~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~ 417 (1133)
+.|..||.. ++..... .+......++++ ++++. + +++...++.|..++...
T Consensus 142 ~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~-------l-~v~~~~~~~i~~~~~~~---- 207 (314)
T 1pjx_A 142 ADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQ-------L-IVAETPTKKLWSYDIKG---- 207 (314)
T ss_dssp SCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEE-------E-EEEETTTTEEEEEEEEE----
T ss_pred ccccccccCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCE-------E-EEEECCCCeEEEEECCC----
Confidence 355666654 5543332 222345678888 88854 0 44445666665333210
Q ss_pred eccCCceEEE-EEecCCcccCCC-CCEEEEEECCCC-eEEEEecCCeEEEEeCC-CCeeEEEecCCcceeE--EecCCCE
Q 043350 418 MGAADAVRRV-ATRGAGAFVDDT-KRTEAMVLTADG-MIWSGCTNGLLVQWDGN-GNRVSDILHHQCAVQC--FCTYGSR 491 (1133)
Q Consensus 418 ~~~~~~V~~v-~~~p~g~~~~h~-~~V~sl~~spdg-~L~sgs~DG~I~vWd~~-g~~l~~~~~h~~~V~~--fs~dg~~ 491 (1133)
...+... .+. .+..+. .....++++++| .+++...++.|.+||.+ ++.+..+..+...+.+ |+++|++
T Consensus 208 ---~g~~~~~~~~~---~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~ 281 (314)
T 1pjx_A 208 ---PAKIENKKVWG---HIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKT 281 (314)
T ss_dssp ---TTEEEEEEEEE---ECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSE
T ss_pred ---CCccccceEEE---ECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCE
Confidence 0011000 000 022232 457789999999 55555578899999996 7777777766566666 7899996
Q ss_pred EEEEe-cCCeEEEEeCCC
Q 043350 492 MYVGY-VSGYLQILDLDG 508 (1133)
Q Consensus 492 Lasgs-~DG~I~vwd~~g 508 (1133)
|++++ .++.|..|++..
T Consensus 282 l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 282 IFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEETTTTEEEEEECSS
T ss_pred EEEEeCCCCeEEEEeCCC
Confidence 66555 568999999863
No 214
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.70 E-value=6.4e-07 Score=97.52 Aligned_cols=232 Identities=10% Similarity=-0.001 Sum_probs=138.9
Q ss_pred CeEEEEEeeCCc-EE-EEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEec
Q 043350 264 PVLAMIFSSQGD-LW-SGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSD 341 (1133)
Q Consensus 264 ~V~sl~fsp~g~-L~-Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~ 341 (1133)
...+|+++++|+ ++ +.+.++.|.+|+..+........... ..+.. +....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~---------------------------~~p~~-i~~~~ 76 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL---------------------------YQPQG-LAVDG 76 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSC---------------------------CSCCC-EEECT
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCc---------------------------CCcce-eEECC
Confidence 678999999999 55 44678999999875432111000000 00111 11122
Q ss_pred CCceEEEecCCCceeEeecCCCceeEEEec-CCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeecc
Q 043350 342 HARARVWCAQPLSFSLWDARSKELLKVFNI-EGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGA 420 (1133)
Q Consensus 342 d~~i~vwss~d~~I~lWD~~tg~~l~~~~~-h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~ 420 (1133)
++.+.+-.. ++.|.+||...+.. ..+.. .......+++++++.+ +++...++.|..++.......
T Consensus 77 ~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l---------~v~~~~~~~i~~~~~~~~~~~--- 142 (270)
T 1rwi_B 77 AGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAV---------YVADRGNNRVVKLAAGSKTQT--- 142 (270)
T ss_dssp TCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCE---------EEEEGGGTEEEEECTTCCSCE---
T ss_pred CCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCE---------EEEECCCCEEEEEECCCceeE---
Confidence 333222223 67788888765443 33332 2245789999999887 777666666653322111000
Q ss_pred CCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCCCCeeEEEe-cCCcceeE--EecCCCEEEEEe
Q 043350 421 ADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGNGNRVSDIL-HHQCAVQC--FCTYGSRMYVGY 496 (1133)
Q Consensus 421 ~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g~~l~~~~-~h~~~V~~--fs~dg~~Lasgs 496 (1133)
... ......+..++++++| .+++...++.|.+|+..+....... .+...+.+ ++++|...++..
T Consensus 143 -------~~~-----~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~ 210 (270)
T 1rwi_B 143 -------VLP-----FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH 210 (270)
T ss_dssp -------ECC-----CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET
T ss_pred -------eec-----cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC
Confidence 000 1112345678889988 5556666889999999765443332 22244454 788886666666
Q ss_pred cCCeEEEEeCCCCcceeee-ccccCeEEeeec--ccceeeecccCCeeeccccCCC
Q 043350 497 VSGYLQILDLDGNLTASWI-AHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFTSPS 549 (1133)
Q Consensus 497 ~DG~I~vwd~~g~~l~~~~-~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s~~ 549 (1133)
.++.|.+||..+....... .+...+.+++++ +..+++...++.|+++++..+.
T Consensus 211 ~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 211 NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp TTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 7899999999876543332 334678899998 7777788889999999976643
No 215
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=2.5e-07 Score=103.35 Aligned_cols=136 Identities=16% Similarity=0.150 Sum_probs=76.5
Q ss_pred ccceEEEEEEcCCCCCCc-----------hhhhhhhcCCCCCccEEEEeeeecccccchhhhhhhhhhhcCCCCcchhhH
Q 043350 571 DVRILVGTWNVGQGRASH-----------ESLLSWLGSVSSDVGIVAVGLQEVEMGAGFLAMSAAKETVGLEGSAIGQWW 639 (1133)
Q Consensus 571 ~lrI~v~TWNv~~~~~~~-----------~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w 639 (1133)
.-.+.|.|||+....+.. +.+..+|.. .+|| ||||||+.. .+
T Consensus 4 ~~~lrV~t~Ni~~~~~~~~~~~~~w~~r~~~i~~~i~~--~~~D--Iv~LQEv~~-----------------------~~ 56 (298)
T 3mpr_A 4 PTSLTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQY--HDFD--IFGTQECFL-----------------------HQ 56 (298)
T ss_dssp CEEEEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHHH--TTCS--EEEEESBCH-----------------------HH
T ss_pred CCcEEEEEEEeccCCCCCcccccCHHHHHHHHHHHHHH--cCCC--EEEEeCCCH-----------------------HH
Confidence 345788899996543321 234445543 4677 578999952 12
Q ss_pred HHHHhhhcCCCCcEEEEeeee----cceEEEEEEEecccccccCcee--ec----ccccccccccccceeEEEEEEE--c
Q 043350 640 QDTIGKALDEGTTFERMGSRQ----LAGLLISFWVRKNLRTHVGDVD--AA----AVPCGFGRAIGNKGGVGLRIRV--Y 707 (1133)
Q Consensus 640 ~~~~~~~l~~~~~y~~v~~~~----l~g~~l~v~~~~~~~~~i~~v~--~~----~v~~G~~~~~gnKG~v~~r~~~--~ 707 (1133)
.+.|.+.|+ ++.| +.... -.|-.+.+|.|++-.+-+..-. .. ..+.|.. ..-+++++.++|.. .
T Consensus 57 ~~~l~~~l~-~y~~--~~~~~~~g~~~g~~~aily~~sr~~i~~~~~~~l~~~p~~~~~~~~-~~~~R~~~~~~~~~~~~ 132 (298)
T 3mpr_A 57 LKDMKEALP-GYDY--IGVGRDDGKDKGEHSAIFYRTDKFDIVEKGDFWLSETPDVPSKGWD-AVLPRICSWGHFKCKDT 132 (298)
T ss_dssp HHHHHHHST-TEEE--ECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSSTTSSCCCTT-CSSCCEEEEEEEEETTT
T ss_pred HHHHHHhCC-CCcE--EEEecCCCCCCCceeEEEEecCceEEEeccEEEccCCCCccCcccc-cccCceeEEEEEEEcCC
Confidence 344555562 3333 43322 2344466676666443221111 00 1112221 12477888888884 6
Q ss_pred CeEEEEEecccccChHHHHHHHHHHHHHHHhC
Q 043350 708 DRTICFVNCHLAAHLEAVNRRNADYDHIYRNM 739 (1133)
Q Consensus 708 ~~~~~fvn~Hlaa~~~~~~~Rn~d~~~i~~~~ 739 (1133)
+..|+++|+||.... .+.|.++...|.+.+
T Consensus 133 g~~~~v~~~Hl~~~~--~~~R~~q~~~l~~~i 162 (298)
T 3mpr_A 133 GFEFLFFNLHMDHIG--KKARVESAFLVQEKM 162 (298)
T ss_dssp CCEEEEEEEECCSSC--HHHHHHHHHHHHHHH
T ss_pred CCEEEEEEecCCCCC--HHHHHHHHHHHHHHH
Confidence 789999999998543 356777777776654
No 216
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.67 E-value=4.9e-06 Score=101.27 Aligned_cols=270 Identities=13% Similarity=0.060 Sum_probs=157.8
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCC--CCceeeE
Q 043350 222 CGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWE--SIEKSLS 298 (1133)
Q Consensus 222 pd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~--~~~~~l~ 298 (1133)
+.+.++++...+++|.++|..+. +.+..+. ....+..+.|+|+|+ |++++.|+.|.+||+. +......
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~--------~v~~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~ 235 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTY--------EIKTVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE 235 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTC--------CEEEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCC--------eEEEEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEE
Confidence 45567788888999999999861 2233333 233567999999999 8899999999999995 3211111
Q ss_pred eCCCCceEEEEeecceEEEccCceeeeccccCC--CCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCC---
Q 043350 299 LKPEEKHMAALLVERSFIDLRAQVTVNGACSIS--STEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEG--- 373 (1133)
Q Consensus 299 ~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~--~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~--- 373 (1133)
+.. +.. ...+...+ .++.. .+.+-+..+++|.++|..+.+.++.+....
T Consensus 236 i~~-G~~------------------P~~ia~s~~~~pDGk-------~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~ 289 (567)
T 1qks_A 236 IKI-GSE------------------ARSIETSKMEGWEDK-------YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY 289 (567)
T ss_dssp EEC-CSE------------------EEEEEECCSTTCTTT-------EEEEEEEETTEEEEEETTTCCEEEEEECCEECT
T ss_pred Eec-CCC------------------CceeEEccccCCCCC-------EEEEEEccCCeEEEEECCCCcEEEEEecccccc
Confidence 100 000 00001100 01111 122222567999999999999998876432
Q ss_pred -------c-ceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEE
Q 043350 374 -------H-IENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAM 445 (1133)
Q Consensus 374 -------~-~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl 445 (1133)
. .+..+..++++.. + ++.....|+|...+......+ .+..+ ........+
T Consensus 290 ~~~~~~p~~rva~i~~s~~~~~-------~-vv~~~~~g~v~~vd~~~~~~~-----~v~~i---------~~~~~~~d~ 347 (567)
T 1qks_A 290 DEQEYHPEPRVAAILASHYRPE-------F-IVNVKETGKILLVDYTDLNNL-----KTTEI---------SAERFLHDG 347 (567)
T ss_dssp TTCCEESCCCEEEEEECSSSSE-------E-EEEETTTTEEEEEETTCSSEE-----EEEEE---------ECCSSEEEE
T ss_pred ccccccCCCceEEEEEcCCCCE-------E-EEEecCCCeEEEEecCCCccc-----eeeee---------eccccccCc
Confidence 1 4567777776543 0 444455566542221111000 01111 112345677
Q ss_pred EECCCC-eEEEE-ecCCeEEEEeC-CCCeeEEEec-----CCc-ceeEEecCCCEEEEEe--cCCeEEEEeCCC------
Q 043350 446 VLTADG-MIWSG-CTNGLLVQWDG-NGNRVSDILH-----HQC-AVQCFCTYGSRMYVGY--VSGYLQILDLDG------ 508 (1133)
Q Consensus 446 ~~spdg-~L~sg-s~DG~I~vWd~-~g~~l~~~~~-----h~~-~V~~fs~dg~~Lasgs--~DG~I~vwd~~g------ 508 (1133)
.|+|+| +++++ ..++.|.++|. +++.+..+.. |.+ .+.-++|++..+++.+ .+++|.++|...
T Consensus 348 ~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~ 427 (567)
T 1qks_A 348 GLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDN 427 (567)
T ss_dssp EECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTT
T ss_pred eECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccc
Confidence 899999 65554 46889999999 5565555543 432 2222688866555443 578999999864
Q ss_pred --CcceeeeccccCeEEeeec--ccceeeecc-------cCCeeeccccCC
Q 043350 509 --NLTASWIAHSSPVLKLAVG--VDHIYSLAA-------HGGIRGWTFTSP 548 (1133)
Q Consensus 509 --~~l~~~~~H~~~V~~l~fs--~~~L~S~s~-------Dg~I~lW~l~s~ 548 (1133)
+.++++......-..+.++ +++|+.... ..+|.++|+...
T Consensus 428 ~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 428 AWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp BTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred cCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 3455555543332335556 667776442 458999998765
No 217
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=98.66 E-value=4.1e-07 Score=101.72 Aligned_cols=46 Identities=26% Similarity=0.322 Sum_probs=37.1
Q ss_pred cccceeEEEEEEEcCeEEEEEecccccCh------HHHHHHHHHHHHHHHhC
Q 043350 694 IGNKGGVGLRIRVYDRTICFVNCHLAAHL------EAVNRRNADYDHIYRNM 739 (1133)
Q Consensus 694 ~gnKG~v~~r~~~~~~~~~fvn~Hlaa~~------~~~~~Rn~d~~~i~~~~ 739 (1133)
..++|++.+++.+.+..|.|+|+||.+.. .....|.+++..|.+.+
T Consensus 128 ~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i 179 (306)
T 2ddr_A 128 LSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFI 179 (306)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHH
T ss_pred hcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHH
Confidence 35789999999999999999999998874 24567888888876654
No 218
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.65 E-value=2.1e-05 Score=86.33 Aligned_cols=268 Identities=11% Similarity=0.070 Sum_probs=156.8
Q ss_pred eEEEEE-eCCCCeEE-e-cCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCC
Q 043350 158 FLRNIA-CTDTQLWA-G-QECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDG 234 (1133)
Q Consensus 158 ~V~~v~-s~dg~lla-s-~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg 234 (1133)
...+++ .++|.+++ . .++.|.+|+....... +........+.++++++++.+.++...++
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~~~~~i~~~~~g~l~v~~~~~~ 83 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQSGRIKE-----------------FEVPTPDAKVMCLIVSSLGDIWFTENGAN 83 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTSCEEE-----------------EECSSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCCCceEE-----------------EECCCCCCcceeEEECCCCCEEEEecCCC
Confidence 677888 88899888 3 5689999997632111 01112335688999999998877777788
Q ss_pred eEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecc
Q 043350 235 KIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVER 313 (1133)
Q Consensus 235 ~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~ 313 (1133)
.|..||..+ . .....+......+.++++.++|. +++...++.|..|+.......+........
T Consensus 84 ~v~~~d~~g-~-------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~-------- 147 (300)
T 2qc5_A 84 KIGKLSKKG-G-------FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSY-------- 147 (300)
T ss_dssp EEEEECTTS-C-------EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSSTTCC--------
T ss_pred eEEEECCCC-C-------eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCCCCC--------
Confidence 999998774 1 11112222346789999999999 555555788999987632222211111100
Q ss_pred eEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEE-ecCCcceeEEEeCCCCCcccccc
Q 043350 314 SFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVF-NIEGHIENRVDTQSVQDQPVEDE 392 (1133)
Q Consensus 314 s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~-~~h~~~v~~l~~sp~g~~~~e~e 392 (1133)
. ..+....++.+.+....++.|..||. +++..... ......+..+++.+++.+
T Consensus 148 ----------~----------~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l----- 201 (300)
T 2qc5_A 148 ----------P----------AFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGAL----- 201 (300)
T ss_dssp ----------E----------EEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSE-----
T ss_pred ----------c----------eeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCE-----
Confidence 0 01111223332222244667888887 56554321 223345778999998876
Q ss_pred ceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEE-ecCCeEEEEeCCCCe
Q 043350 393 MKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSG-CTNGLLVQWDGNGNR 471 (1133)
Q Consensus 393 ~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sg-s~DG~I~vWd~~g~~ 471 (1133)
.++....+.+..++. ...+.... +......+.+++++++|.|+.+ ..++.|..|+.++..
T Consensus 202 ----~v~~~~~~~i~~~~~---------~g~~~~~~------~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~ 262 (300)
T 2qc5_A 202 ----WFVEIMGNKIGRITT---------TGEISEYD------IPTPNARPHAITAGKNSEIWFTEWGANQIGRITNDNTI 262 (300)
T ss_dssp ----EEEETTTTEEEEECT---------TCCEEEEE------CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCE
T ss_pred ----EEEccCCCEEEEEcC---------CCcEEEEE------CCCCCCCceEEEECCCCCEEEeccCCCeEEEECCCCcE
Confidence 666655555643322 11111111 1123456788999999944444 456899999997643
Q ss_pred eEEE--ecCCcceeE--EecCCCEEEEEecCCeEEEEeC
Q 043350 472 VSDI--LHHQCAVQC--FCTYGSRMYVGYVSGYLQILDL 506 (1133)
Q Consensus 472 l~~~--~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~ 506 (1133)
. .+ ......+.+ +.++|++.+ ++.. .|..+|.
T Consensus 263 ~-~~~~~~~~~~~~~i~~~~~g~l~v-~~~~-~i~~~~p 298 (300)
T 2qc5_A 263 Q-EYQLQTENAEPHGITFGKDGSVWF-ALKC-KIGKLNL 298 (300)
T ss_dssp E-EEECCSTTCCCCCEEECTTSCEEE-ECSS-EEEEEEE
T ss_pred E-EEECCccCCccceeEeCCCCCEEE-EccC-ceEEeCC
Confidence 3 33 222334444 677887444 4445 7777764
No 219
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.64 E-value=1.9e-06 Score=97.58 Aligned_cols=275 Identities=10% Similarity=0.041 Sum_probs=152.6
Q ss_pred CCCeEEeccCCCCCCCCCCeeee-ccCCCccccccceEEEEEeCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCC
Q 043350 123 GTGIFKVPSRAAVHPGRPPCLEL-RPHPLKETQAGRFLRNIACTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRG 199 (1133)
Q Consensus 123 ~dg~irlW~~~~~~~g~~~~~~l-~~H~~~~~~~g~~V~~v~s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g 199 (1133)
.++.|.++|.++ ++. ...+ .... ....|.....+.-.++++++ ..++.|.+||..+.....
T Consensus 15 ~~~~l~~~d~~t---~~~-~~~i~~~~n--~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~---------- 78 (328)
T 3dsm_A 15 SNATLSYYDPAT---CEV-ENEVFYRAN--GFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVG---------- 78 (328)
T ss_dssp CCBEEEEEETTT---TEE-ECSHHHHHH--SSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEE----------
T ss_pred CCceEEEEECCC---CEE-hhhhHhhhc--CcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEE----------
Confidence 488999999874 222 2111 0000 11233456667734555666 557899999988632210
Q ss_pred CCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccC-----CCCeEEEEEeeCC
Q 043350 200 DEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAH-----RGPVLAMIFSSQG 274 (1133)
Q Consensus 200 ~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH-----~~~V~sl~fsp~g 274 (1133)
.. ........+++++++++.++...++.|.+||..+. +....+... ......|++ ..+
T Consensus 79 -------~i-~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~--------~~~~~i~~g~~~~~~~~p~~i~~-~~~ 141 (328)
T 3dsm_A 79 -------RI-TGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTY--------EITGYIECPDMDMESGSTEQMVQ-YGK 141 (328)
T ss_dssp -------EE-ECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTT--------EEEEEEECTTCCTTTCBCCCEEE-ETT
T ss_pred -------Ec-CCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCC--------eEEEEEEcCCccccCCCcceEEE-ECC
Confidence 01 12345788999888855555448899999998761 212222211 124556777 455
Q ss_pred cEEEEe--CCCcEEEEeCCCCce--eeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCc--eEEE
Q 043350 275 DLWSGG--EGGVIKIWPWESIEK--SLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHAR--ARVW 348 (1133)
Q Consensus 275 ~L~Sgs--~DgtI~iWdl~~~~~--~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~--i~vw 348 (1133)
.|+.+. .+++|.+||+.+... .+...... ..+. .+++..+.++..+. ...|
T Consensus 142 ~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p---------------------~~i~--~~~dG~l~v~~~~~~~~~~~ 198 (328)
T 3dsm_A 142 YVYVNCWSYQNRILKIDTETDKVVDELTIGIQP---------------------TSLV--MDKYNKMWTITDGGYEGSPY 198 (328)
T ss_dssp EEEEEECTTCCEEEEEETTTTEEEEEEECSSCB---------------------CCCE--ECTTSEEEEEBCCBCTTCSS
T ss_pred EEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCc---------------------cceE--EcCCCCEEEEECCCccCCcc
Confidence 554444 489999999986321 11111000 0011 11222233332100 0000
Q ss_pred ecCCCceeEeecCCCceeEEEecC-CcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEE
Q 043350 349 CAQPLSFSLWDARSKELLKVFNIE-GHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRV 427 (1133)
Q Consensus 349 ss~d~~I~lWD~~tg~~l~~~~~h-~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v 427 (1133)
....+.|.+||..+++....+... ......++++|+++. +..+.. .+..++....... ..
T Consensus 199 ~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~---------lyv~~~--~v~~~d~~t~~~~--------~~ 259 (328)
T 3dsm_A 199 GYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDT---------LYWINN--DIWRMPVEADRVP--------VR 259 (328)
T ss_dssp CBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCE---------EEEESS--SEEEEETTCSSCC--------SS
T ss_pred ccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCE---------EEEEcc--EEEEEECCCCcee--------ee
Confidence 001378999999999988877653 346789999999887 666544 4433322211100 00
Q ss_pred EEecCCcccCCCCCEEEEEECCC-CeEEEE-----ecCCeEEEEeCCCCeeEEEec
Q 043350 428 ATRGAGAFVDDTKRTEAMVLTAD-GMIWSG-----CTNGLLVQWDGNGNRVSDILH 477 (1133)
Q Consensus 428 ~~~p~g~~~~h~~~V~sl~~spd-g~L~sg-----s~DG~I~vWd~~g~~l~~~~~ 477 (1133)
.+ +.........++++|+ +.|+.+ ..++.|.+||.+|+.+.++..
T Consensus 260 ~~-----~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~~ 310 (328)
T 3dsm_A 260 PF-----LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYV 310 (328)
T ss_dssp CS-----BCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEEE
T ss_pred ee-----ecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEEe
Confidence 00 0111345778899984 444444 468999999999988887754
No 220
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.64 E-value=1.2e-06 Score=98.40 Aligned_cols=106 Identities=15% Similarity=0.159 Sum_probs=76.5
Q ss_pred EEEEEECCCCeEEEEecCCeEEEEeCCCCeeEEEecCCcceeE-EecCCCEEEEEecCCeEEEEeCCCCcceeeeccccC
Q 043350 442 TEAMVLTADGMIWSGCTNGLLVQWDGNGNRVSDILHHQCAVQC-FCTYGSRMYVGYVSGYLQILDLDGNLTASWIAHSSP 520 (1133)
Q Consensus 442 V~sl~~spdg~L~sgs~DG~I~vWd~~g~~l~~~~~h~~~V~~-fs~dg~~Lasgs~DG~I~vwd~~g~~l~~~~~H~~~ 520 (1133)
+.++...++|.|+.++.++.|..++.++..+..+......+.+ +...+..|++|+.+|.|..+|.+++.+..+......
T Consensus 217 ~~~~~~~~~g~l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~~g~~~~~~~~~~~~ 296 (330)
T 3hxj_A 217 VTRPAISEDGTIYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINPDGTEKWNFETGSWI 296 (330)
T ss_dssp CSCCEECTTSCEEEEETTTEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECTTSCEEEEEECSSCC
T ss_pred eeceEECCCCeEEEEcCCCeEEEECCCCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECCCCcEEEEEEcCCcc
Confidence 4445566777788888888899998888887777654443444 222245688899999999999877766666555666
Q ss_pred eEEeeec-ccceeeecccCCeeeccccC
Q 043350 521 VLKLAVG-VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 521 V~~l~fs-~~~L~S~s~Dg~I~lW~l~s 547 (1133)
+.++..+ +..|+.++.+|.+++-....
T Consensus 297 ~~~~~~d~~g~l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 297 IATPVIDENGTIYFGTRNGKFYALFNLE 324 (330)
T ss_dssp CSCCEECTTCCEEEECTTSCEEEEEC--
T ss_pred ccceEEcCCCEEEEEcCCCeEEEEeccc
Confidence 7788885 77888899999999876543
No 221
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.61 E-value=3.7e-05 Score=88.63 Aligned_cols=240 Identities=8% Similarity=-0.082 Sum_probs=129.3
Q ss_pred EEEEeCCCCEEEEEe----------CCCeEEEEeCCCCCCCCCCCcccccccc----c---CCCCeEEEEEeeCCc-EEE
Q 043350 217 CLMVDCGNRLVWTGH----------KDGKIRSWKMDQTLDDANNPFKEGLSWQ----A---HRGPVLAMIFSSQGD-LWS 278 (1133)
Q Consensus 217 ~la~spd~~~LaSgs----------~Dg~V~vWd~~~~~~~~~~~~~~~~~l~----g---H~~~V~sl~fsp~g~-L~S 278 (1133)
.++++||++.|+.+. .++.|.+||.... +.+..+. . +...-..++|+|+|+ |+.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~--------~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v 141 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF--------LPIADIELPDAPRFDVGPYSWMNANTPNNADLLF 141 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC--------cEEEEEECCCccccccCCCccceEECCCCCEEEE
Confidence 899999999999886 3678999998751 1111111 0 012345889999999 777
Q ss_pred EeC--CCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCcee
Q 043350 279 GGE--GGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFS 356 (1133)
Q Consensus 279 gs~--DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~ 356 (1133)
+.. ++.|.++| .+....-..-+-+.. +.+ .+.+.. ..+..+.|+.+.
T Consensus 142 ~n~~~~~~v~viD-~t~~~~~~~i~~~~~----------~~~-----------~~~~~~---------~~~~~~~dg~~~ 190 (373)
T 2mad_H 142 FQFAAGPAVGLVV-QGGSSDDQLLSSPTC----------YHI-----------HPGAPS---------TFYLLCAQGGLA 190 (373)
T ss_pred EecCCCCeEEEEE-CCCCEEeEEcCCCce----------EEE-----------EeCCCc---------eEEEEcCCCCEE
Confidence 764 57899999 764221110111000 000 011111 111124678888
Q ss_pred EeecCCCceeEEEe-----cCCcc-eeEEEeCCCCCccccccceEEEEeeCCCCccccccc--cccce---eeccCCceE
Q 043350 357 LWDARSKELLKVFN-----IEGHI-ENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQ--RSRNA---IMGAADAVR 425 (1133)
Q Consensus 357 lWD~~tg~~l~~~~-----~h~~~-v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~--~~~~~---~~~~~~~V~ 425 (1133)
++|. +++.+.... ..... .....+.+++.. ++..+..+.+...+. ..... +.-......
T Consensus 191 ~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~---------~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~ 260 (373)
T 2mad_H 191 KTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR---------IVWPVYSGKILQADISAAGATNKAPIDALSGGRK 260 (373)
T ss_pred EEEC-CCcEEEEEeccccccCCcceeecceeEecCCE---------EEEEcCCceEEEEeccCCcceEeeeeeecCCccc
Confidence 8888 777663322 11111 122334444433 222234454431111 10000 000000000
Q ss_pred EEEEecCCcccCCCCCEEEEEECCCC-eEEEEec----------CCeEEEEeC-CCCeeEEEecCCcceeE-EecCCC-E
Q 043350 426 RVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCT----------NGLLVQWDG-NGNRVSDILHHQCAVQC-FCTYGS-R 491 (1133)
Q Consensus 426 ~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~----------DG~I~vWd~-~g~~l~~~~~h~~~V~~-fs~dg~-~ 491 (1133)
...+. ......+.+++++ .++.+.. ++.|.++|. .++.+.++.....+-.- |++||+ +
T Consensus 261 ~~~~~--------p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~ 332 (373)
T 2mad_H 261 ADTWR--------PGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPD 332 (373)
T ss_pred cccee--------cCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeE
Confidence 11111 1224457789998 6666543 357999999 45777888654332222 999999 7
Q ss_pred EEEEe-cCCeEEEEeCCC-Cccee
Q 043350 492 MYVGY-VSGYLQILDLDG-NLTAS 513 (1133)
Q Consensus 492 Lasgs-~DG~I~vwd~~g-~~l~~ 513 (1133)
|+++. .++.|.+||+.. +.+..
T Consensus 333 l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 333 LYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEEEcCCCCeEEEEECCCCCEEee
Confidence 88877 599999999974 55555
No 222
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.60 E-value=7.1e-06 Score=91.57 Aligned_cols=241 Identities=14% Similarity=0.102 Sum_probs=134.6
Q ss_pred CCCCeEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCcEEEEe-CCCcEEEE
Q 043350 211 NTSPTMCLMVDCGNR-LVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGDLWSGG-EGGVIKIW 288 (1133)
Q Consensus 211 h~s~V~~la~spd~~-~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs-~DgtI~iW 288 (1133)
...-....+|+++++ +++++..++.|..|+..+ . ...+..+...+.+++++++|+|+.+. .++.|.+|
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g---------~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG---------T-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRS 112 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS---------C-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC---------C-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEE
Confidence 344567889999988 778888899999998854 1 23445566789999999999955554 45789999
Q ss_pred eCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecC--CceE-------EEecCCCceeEee
Q 043350 289 PWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDH--ARAR-------VWCAQPLSFSLWD 359 (1133)
Q Consensus 289 dl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d--~~i~-------vwss~d~~I~lWD 359 (1133)
+.+.....+.....+.. +. ..+.+.. +++..+.++.. +... .-....+.|..||
T Consensus 113 ~~~g~~~~~~~~~~~~~------------~~---~~~~i~~--d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d 175 (305)
T 3dr2_A 113 DADGQAHLLVGRYAGKR------------LN---SPNDLIV--ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLP 175 (305)
T ss_dssp CTTSCEEEEECEETTEE------------CS---CCCCEEE--CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred CCCCCEEEEEeccCCCc------------cC---CCCCEEE--CCCCCEEEeCcCCCccccccccccccccCCCeEEEEc
Confidence 87532222111101100 00 0001111 11111222110 0000 0000124567777
Q ss_pred cCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCC------CccccccccccceeeccCCceEEEEEecCC
Q 043350 360 ARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKK------EKPHGFLQRSRNAIMGAADAVRRVATRGAG 433 (1133)
Q Consensus 360 ~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~D------g~i~~~~~~~~~~~~~~~~~V~~v~~~p~g 433 (1133)
..+++..... .....+.++|+|+++. ++.+... +.|..++..... +. -..+...
T Consensus 176 ~~~g~~~~~~--~~~~p~gl~~spdg~~---------lyv~~~~~~~~~~~~i~~~~~~~~~-l~-----~~~~~~~--- 235 (305)
T 3dr2_A 176 PDGSPLQRMA--DLDHPNGLAFSPDEQT---------LYVSQTPEQGHGSVEITAFAWRDGA-LH-----DRRHFAS--- 235 (305)
T ss_dssp SSSCCCEEEE--EESSEEEEEECTTSSE---------EEEEECCC---CCCEEEEEEEETTE-EE-----EEEEEEC---
T ss_pred CCCCcEEEEe--cCCCCcceEEcCCCCE---------EEEEecCCcCCCCCEEEEEEecCCC-cc-----CCeEEEE---
Confidence 7677655433 3344678999999986 5555443 344322211000 00 0001111
Q ss_pred cccCCCCCEEEEEECCCCeEEEEecCCeEEEEeCCCCeeEEEecCCcceeE-EecCCCEEEEEecCCeEE
Q 043350 434 AFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGNGNRVSDILHHQCAVQC-FCTYGSRMYVGYVSGYLQ 502 (1133)
Q Consensus 434 ~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~g~~l~~~~~h~~~V~~-fs~dg~~Lasgs~DG~I~ 502 (1133)
........++++++|.|+++..+| |.+|+.+|+.+..+..+.....+ |+++++.|++++.++..+
T Consensus 236 ---~~~~~pdgi~~d~~G~lwv~~~~g-v~~~~~~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 236 ---VPDGLPDGFCVDRGGWLWSSSGTG-VCVFDSDGQLLGHIPTPGTASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp ---CSSSCCCSEEECTTSCEEECCSSE-EEEECTTSCEEEEEECSSCCCEEEECTTSCEEEEEETTEEEE
T ss_pred ---CCCCCCCeEEECCCCCEEEecCCc-EEEECCCCCEEEEEECCCceeEEEEeCCCCEEEEEcCCeEEE
Confidence 011223457788999777777554 99999999988888776543333 889999999988765433
No 223
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=98.58 E-value=5.8e-08 Score=105.50 Aligned_cols=125 Identities=14% Similarity=0.143 Sum_probs=65.0
Q ss_pred EEEEEEcCCCCCCchhhhhhhcCCCCCccEEEEeeeecccccchhhhhhhhhhhcCCCCcchhhHHHHHhhhcCCCCcEE
Q 043350 575 LVGTWNVGQGRASHESLLSWLGSVSSDVGIVAVGLQEVEMGAGFLAMSAAKETVGLEGSAIGQWWQDTIGKALDEGTTFE 654 (1133)
Q Consensus 575 ~v~TWNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~y~ 654 (1133)
.+.|||+.+.....+.+.+++.. .+||| |+|||+...... ...+.+. ..++.|.
T Consensus 2 rv~t~Nv~~~~~~~~~i~~~i~~--~~~DI--v~LQE~~~~~~~-------------------~~~~~~~---~~gy~~~ 55 (256)
T 2jc4_A 2 KITTWNVNSLNVRLPQVQNLLAD--NPPDI--LVLQELKLDQDK-------------------FPAAALQ---MMGWHCV 55 (256)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHS--SCCSE--EEEECCCSCGGG-------------------SCHHHHH---TTTCEEE
T ss_pred EEEEEEcCCcHHHHHHHHHHHHh--cCCCE--EEEEeeccchhc-------------------CCHhHHh---hcCCeEE
Confidence 57899998754444567778864 56786 678999643210 0111221 1244432
Q ss_pred EEeeeecceEEEEEEEecccccccCceeecccccccccccccceeEEEEEEEcCeEEEEEecccccChH----HHHHHHH
Q 043350 655 RMGSRQLAGLLISFWVRKNLRTHVGDVDAAAVPCGFGRAIGNKGGVGLRIRVYDRTICFVNCHLAAHLE----AVNRRNA 730 (1133)
Q Consensus 655 ~v~~~~l~g~~l~v~~~~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~~r~~~~~~~~~fvn~Hlaa~~~----~~~~Rn~ 730 (1133)
..+...-.| +++|.|..+. .+.. ++.+..+...+..+.+.+. .+.++|+||.+... ..+.|.+
T Consensus 56 ~~~~~~~~G--~ailsr~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~--~~~v~~~h~~~~~~~~~~~~~~r~~ 122 (256)
T 2jc4_A 56 WSGQKTYNG--VAIVSRSVPQ----DVHF-----GLPALPDDPQRRVIAATVS--GVRVINVYCVNGEALDSPKFKYKEQ 122 (256)
T ss_dssp EECCSSSCC--EEEEESSCCE----EEEE-----SCTTSTTCCSCCEEEEEET--TEEEEEEECCCCCSTTSHHHHHHHH
T ss_pred ECCCCcceE--EEEEECCChH----Hhee-----cCCCCccCCcCcEEEEEeC--CEEEEEEEecCCCCCCcHhHHHHHH
Confidence 222222234 4567776543 2221 2221111112222334443 79999999988653 4555665
Q ss_pred HHHHHHHh
Q 043350 731 DYDHIYRN 738 (1133)
Q Consensus 731 d~~~i~~~ 738 (1133)
.+..+.+.
T Consensus 123 ~~~~l~~~ 130 (256)
T 2jc4_A 123 WFAALTEF 130 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56555543
No 224
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.55 E-value=3e-06 Score=94.26 Aligned_cols=237 Identities=10% Similarity=0.036 Sum_probs=137.2
Q ss_pred cccCCCCCEEEE-------ecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCC-CCeEE-ecCCcEE
Q 043350 109 KPFQPMVEFIGS-------GGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTD-TQLWA-GQECGVR 178 (1133)
Q Consensus 109 ~~~~p~g~~las-------gs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~d-g~lla-s~Dg~Vr 178 (1133)
+.++++|.++++ +..++.|.+|+..+ ++. ..+.. +. ....+..+.+++ .++ |.+++ .....|.
T Consensus 23 ~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~---g~~--~~~~~-~~-~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~ 95 (314)
T 1pjx_A 23 PVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT---GKK--TVICK-PE-VNGYGGIPAGCQCDRDANQLFVADMRLGLL 95 (314)
T ss_dssp EEECTTSCEEEEETTCEETTEECCEEEEECTTT---CCE--EEEEC-CE-ETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred ceECCCCCEEEEEeccccCCCCCCEEEEEeCCC---CcE--EEEEe-cc-cCCCCCCCceEEEecCCCcEEEEECCCCEE
Confidence 567899988888 67788999998652 332 22221 00 000112577888 788 88888 5556899
Q ss_pred EeeCCCCCCcC-cCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCC---------------CeEEEEeCC
Q 043350 179 FWNLEDSYEPG-AGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKD---------------GKIRSWKMD 242 (1133)
Q Consensus 179 vWdl~~~~~~~-~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~D---------------g~V~vWd~~ 242 (1133)
+||.++..... .... .......+.++++++++++.++...+ +.|..|+.+
T Consensus 96 ~~d~~g~~~~~~~~~~--------------~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (314)
T 1pjx_A 96 VVQTDGTFEEIAKKDS--------------EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD 161 (314)
T ss_dssp EEETTSCEEECCSBCT--------------TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT
T ss_pred EEeCCCCEEEEEeccC--------------CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC
Confidence 99987321111 0000 01122357899999999888777655 455555544
Q ss_pred CCCCCCCCCcccccccccCCCCeEEEEEe----eCCc-EE-EEeCCCcEEEEeCC-CCc-eeeEeCCCCceEEEEeecce
Q 043350 243 QTLDDANNPFKEGLSWQAHRGPVLAMIFS----SQGD-LW-SGGEGGVIKIWPWE-SIE-KSLSLKPEEKHMAALLVERS 314 (1133)
Q Consensus 243 ~~~~~~~~~~~~~~~l~gH~~~V~sl~fs----p~g~-L~-Sgs~DgtI~iWdl~-~~~-~~l~~~~~~~~l~s~~~d~s 314 (1133)
. + ...+..+......++|+ ++|+ |+ +...++.|.+|++. ... ... ..
T Consensus 162 g---------~-~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~------~~--------- 216 (314)
T 1pjx_A 162 G---------Q-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK------KV--------- 216 (314)
T ss_dssp S---------C-EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE------EE---------
T ss_pred C---------C-EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc------eE---------
Confidence 2 1 11223344557899999 9997 54 44578899999874 110 000 00
Q ss_pred EEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccce
Q 043350 315 FIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMK 394 (1133)
Q Consensus 315 ~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~ 394 (1133)
...+.... ...-..+....++.+.+-...++.|.+||..+++.+..+..+...+.++++++++..
T Consensus 217 ~~~~~~~~--------~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~------- 281 (314)
T 1pjx_A 217 WGHIPGTH--------EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKT------- 281 (314)
T ss_dssp EEECCCCS--------SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSE-------
T ss_pred EEECCCCC--------CCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCE-------
Confidence 01111000 000011222233333332246788999999888888888777777899999999984
Q ss_pred EEEEeeCCCCccc
Q 043350 395 VKFVSSNKKEKPH 407 (1133)
Q Consensus 395 v~lasgs~Dg~i~ 407 (1133)
+ +++...++.|.
T Consensus 282 l-~v~~~~~~~l~ 293 (314)
T 1pjx_A 282 I-FVTEHENNAVW 293 (314)
T ss_dssp E-EEEETTTTEEE
T ss_pred E-EEEeCCCCeEE
Confidence 0 45555556664
No 225
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.47 E-value=3.5e-05 Score=88.51 Aligned_cols=261 Identities=13% Similarity=0.104 Sum_probs=142.3
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCCCCceeeEeCCC
Q 043350 223 GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWESIEKSLSLKPE 302 (1133)
Q Consensus 223 d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~~~~~~l~~~~~ 302 (1133)
++..|+.++.++.|..+|..++. .+............... .++.++.++.++.|..+|..++.........
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~--------~~W~~~~~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~ 172 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGT--------VAWQTKVAGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLD 172 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCC--------EEEEEECSSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred eCCEEEEEcCCCEEEEEECCCCC--------EEEEEeCCCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCC
Confidence 45678888999999999987522 22222211111111122 2445888899999999998765333222211
Q ss_pred CceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcc----eeE
Q 043350 303 EKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHI----ENR 378 (1133)
Q Consensus 303 ~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~----v~~ 378 (1133)
... .... ... . .+.. ++.+ +....++.+..+|..+|+.+..+...... +..
T Consensus 173 ~~~----------~~~~---------~~~---~-~~~~-~~~v-~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 227 (376)
T 3q7m_A 173 MPS----------LSLR---------GES---A-PTTA-FGAA-VVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDR 227 (376)
T ss_dssp C---------------C---------CCC---C-CEEE-TTEE-EECCTTTEEEEEETTTCCEEEEEECCC---------
T ss_pred CCc----------eeec---------CCC---C-cEEE-CCEE-EEEcCCCEEEEEECCCCcEEEEEecccCCCCccccc
Confidence 110 0000 000 0 0001 1111 11245778899999999888766543211 000
Q ss_pred ---EEeCC--CCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeE
Q 043350 379 ---VDTQS--VQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMI 453 (1133)
Q Consensus 379 ---l~~sp--~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L 453 (1133)
+...| .+.. +..++.++.+..++..... .++.... .....+.. .++.|
T Consensus 228 ~~~~~~~p~~~~~~---------v~~~~~~g~l~~~d~~tG~-------~~w~~~~----------~~~~~~~~-~~~~l 280 (376)
T 3q7m_A 228 LSDVDTTPVVVNGV---------VFALAYNGNLTALDLRSGQ-------IMWKREL----------GSVNDFIV-DGNRI 280 (376)
T ss_dssp --CCCCCCEEETTE---------EEEECTTSCEEEEETTTCC-------EEEEECC----------CCEEEEEE-ETTEE
T ss_pred ccccCCCcEEECCE---------EEEEecCcEEEEEECCCCc-------EEeeccC----------CCCCCceE-ECCEE
Confidence 11111 1223 5666667766533322111 1111110 11222322 24488
Q ss_pred EEEecCCeEEEEeC-CCCeeEEEecC-CcceeEEecCCCEEEEEecCCeEEEEeCC-CCcceeeeccccCeEE-eeeccc
Q 043350 454 WSGCTNGLLVQWDG-NGNRVSDILHH-QCAVQCFCTYGSRMYVGYVSGYLQILDLD-GNLTASWIAHSSPVLK-LAVGVD 529 (1133)
Q Consensus 454 ~sgs~DG~I~vWd~-~g~~l~~~~~h-~~~V~~fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~H~~~V~~-l~fs~~ 529 (1133)
+.++.+|.|..+|. +|+.+...... ...+......+..|++++.+|.|+++|.. |+++..+......+.+ ....+.
T Consensus 281 ~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~ 360 (376)
T 3q7m_A 281 YLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADG 360 (376)
T ss_dssp EEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETT
T ss_pred EEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECC
Confidence 88889999999998 77877776532 22222333346789999999999999976 6666555553444433 334478
Q ss_pred ceeeecccCCeeecc
Q 043350 530 HIYSLAAHGGIRGWT 544 (1133)
Q Consensus 530 ~L~S~s~Dg~I~lW~ 544 (1133)
.|+.++.+|.|..|+
T Consensus 361 ~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 361 KLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEEEBTTSCEEEEE
T ss_pred EEEEEeCCCEEEEEe
Confidence 888999999998886
No 226
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.46 E-value=2.2e-05 Score=91.79 Aligned_cols=244 Identities=10% Similarity=0.012 Sum_probs=137.5
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCC--cEEE
Q 043350 211 NTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGG--VIKI 287 (1133)
Q Consensus 211 h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~Dg--tI~i 287 (1133)
.+....+|+|+++++++++...++.|++||..+ ..+..+........ ++|+++++ |+.+..++ .|.+
T Consensus 129 ~~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~---------g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~ 198 (409)
T 3hrp_A 129 KFKYMWGIAAVGNNTVLAYQRDDPRVRLISVDD---------NKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYV 198 (409)
T ss_dssp CCCCEEEEEECSTTEEEEEETTTTEEEEEETTT---------TEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEE
T ss_pred ccCCceEEEEeCCCCEEEEecCCCcEEEEECCC---------CEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEE
Confidence 355689999999999888888889999999986 33333322222333 99999999 88888766 6777
Q ss_pred EeCCCCceeeEe---CC-CCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCC
Q 043350 288 WPWESIEKSLSL---KP-EEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSK 363 (1133)
Q Consensus 288 Wdl~~~~~~l~~---~~-~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg 363 (1133)
|+.......... .+ ... ....+...+. ++.+.+ +..++.|..||..++
T Consensus 199 ~d~~~~~~~~~~g~~~~~~~~------------------~p~~iav~p~---------~g~lyv-~d~~~~I~~~d~~~~ 250 (409)
T 3hrp_A 199 YMKASGWAPTRIGQLGSTFSG------------------KIGAVALDET---------EEWLYF-VDSNKNFGRFNVKTQ 250 (409)
T ss_dssp EEGGGTTCEEEEEECCTTSCS------------------CCCBCEECTT---------SSEEEE-ECTTCEEEEEETTTC
T ss_pred EEcCCCceeEEeeeccchhcC------------------CcEEEEEeCC---------CCeEEE-EECCCcEEEEECCCC
Confidence 776542211011 00 000 0011111111 222222 234677888888766
Q ss_pred ceeEE----EecCCcce--eEEEeCCC-CCccccccceEEEEeeCCCCccccccccc-cceeeccCCceEEEEEecCCc-
Q 043350 364 ELLKV----FNIEGHIE--NRVDTQSV-QDQPVEDEMKVKFVSSNKKEKPHGFLQRS-RNAIMGAADAVRRVATRGAGA- 434 (1133)
Q Consensus 364 ~~l~~----~~~h~~~v--~~l~~sp~-g~~~~e~e~~v~lasgs~Dg~i~~~~~~~-~~~~~~~~~~V~~v~~~p~g~- 434 (1133)
..... ..+....- ..++|+|+ +.+ +++-...+.|+.++... ...+.++.... . ..+|.
T Consensus 251 ~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l---------yv~d~~~~~I~~~~~~g~~~~~~g~~~~~-g---~~dg~~ 317 (409)
T 3hrp_A 251 EVTLIKQLELSGSLGTNPGPYLIYYFVDSNF---------YMSDQNLSSVYKITPDGECEWFCGSATQK-T---VQDGLR 317 (409)
T ss_dssp CEEEEEECCCCSCCCCSSCCEEEEETTTTEE---------EEEETTTTEEEEECTTCCEEEEEECTTCC-S---CBCEEG
T ss_pred CEEEEecccccCCCCCCccccEEEeCCCCEE---------EEEeCCCCEEEEEecCCCEEEEEeCCCCC-C---cCCCcc
Confidence 53322 11222222 28999995 555 66666677776332211 11111111000 0 00000
Q ss_pred ccCCCCCEEEEEECCCC-eEEEEe-cCCeEEEEeC-CCCeeEEEecCC---------------cceeE--EecCCCEEEE
Q 043350 435 FVDDTKRTEAMVLTADG-MIWSGC-TNGLLVQWDG-NGNRVSDILHHQ---------------CAVQC--FCTYGSRMYV 494 (1133)
Q Consensus 435 ~~~h~~~V~sl~~spdg-~L~sgs-~DG~I~vWd~-~g~~l~~~~~h~---------------~~V~~--fs~dg~~Las 494 (1133)
....-.....++++++| ++++-. .++.|+.|+. +| .+.++.++. ..... ++++|.++++
T Consensus 318 ~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G-~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVa 396 (409)
T 3hrp_A 318 EEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG-YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIA 396 (409)
T ss_dssp GGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT-EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEE
T ss_pred cccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC-EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEE
Confidence 01112457889999999 666666 7899999996 55 455554431 12333 7788777777
Q ss_pred EecCCeEEEEeC
Q 043350 495 GYVSGYLQILDL 506 (1133)
Q Consensus 495 gs~DG~I~vwd~ 506 (1133)
-..++.|+.+++
T Consensus 397 d~~n~~Ir~i~~ 408 (409)
T 3hrp_A 397 EAWGKAIRKYAV 408 (409)
T ss_dssp ESTTCEEEEEEE
T ss_pred ECCCCeEEEEEe
Confidence 778888888765
No 227
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.46 E-value=4.2e-06 Score=105.82 Aligned_cols=245 Identities=13% Similarity=0.063 Sum_probs=137.7
Q ss_pred CCeEEEEEeCCCCEEEEEeCC-----CeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEE
Q 043350 213 SPTMCLMVDCGNRLVWTGHKD-----GKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIK 286 (1133)
Q Consensus 213 s~V~~la~spd~~~LaSgs~D-----g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~ 286 (1133)
..+..++|||||++||.++.+ .+|++||+.++ .......+...+.+++|+|+ + |+.++.|+..+
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg---------~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~ 232 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADG---------KPLADELKWVKFSGLAWLGN-DALLYSRFAEPKE 232 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTC---------CEEEEEEEEEESCCCEESTT-SEEEEEECCCC--
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCC---------CCCCccCCCceeccEEEECC-CEEEEEEecCccc
Confidence 357889999999999887654 46999999872 22222122222467899999 8 88887765311
Q ss_pred EEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCce-
Q 043350 287 IWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKEL- 365 (1133)
Q Consensus 287 iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~- 365 (1133)
. .. .. .. .....|.+|++.++..
T Consensus 233 -----~-----------~~---------~~-----------------------~~--------~~~~~v~~~~lgt~~~~ 256 (741)
T 1yr2_A 233 -----G-----------QA---------FQ-----------------------AL--------NYNQTVWLHRLGTPQSA 256 (741)
T ss_dssp ------------------------------------------------------C--------CCCCEEEEEETTSCGGG
T ss_pred -----c-----------cc---------cc-----------------------cC--------CCCCEEEEEECCCCchh
Confidence 0 00 00 00 1123345555554432
Q ss_pred -eEEEecCC--cceeEEEeCCCCCccccccceEEEEeeCCCC-----ccccccccccceeeccCCc-eEEEEEecCCccc
Q 043350 366 -LKVFNIEG--HIENRVDTQSVQDQPVEDEMKVKFVSSNKKE-----KPHGFLQRSRNAIMGAADA-VRRVATRGAGAFV 436 (1133)
Q Consensus 366 -l~~~~~h~--~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg-----~i~~~~~~~~~~~~~~~~~-V~~v~~~p~g~~~ 436 (1133)
...+.... ..+..+.+||++++ |+..+.++ .+..++.. ..... ...+ .
T Consensus 257 ~~lv~~~~~~~~~~~~~~~SpDG~~---------l~~~~~~~~~~~~~l~~~d~~------~~~~~~~~~l--------~ 313 (741)
T 1yr2_A 257 DQPVFATPELPKRGHGASVSSDGRW---------VVITSSEGTDPVNTVHVARVT------NGKIGPVTAL--------I 313 (741)
T ss_dssp CEEEECCTTCTTCEEEEEECTTSCE---------EEEEEECTTCSCCEEEEEEEE------TTEECCCEEE--------E
T ss_pred CEEEeccCCCCeEEEEEEECCCCCE---------EEEEEEccCCCcceEEEEECC------CCCCcccEEe--------c
Confidence 22333222 34678899999998 76665443 22211110 00001 1111 1
Q ss_pred CCCCCEEEEEECCCC-eEEEEec----CCeEEEEeCCC--CeeEEEec-CCcceeEEec-CCCEEEEEecCCeEEEEe--
Q 043350 437 DDTKRTEAMVLTADG-MIWSGCT----NGLLVQWDGNG--NRVSDILH-HQCAVQCFCT-YGSRMYVGYVSGYLQILD-- 505 (1133)
Q Consensus 437 ~h~~~V~sl~~spdg-~L~sgs~----DG~I~vWd~~g--~~l~~~~~-h~~~V~~fs~-dg~~Lasgs~DG~I~vwd-- 505 (1133)
.+...+.... +++| .|+..+. ++.|.+|++.+ .....+.. +...+..++. ++.++++...|+..+||.
T Consensus 314 ~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 314 PDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp CSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEE
T ss_pred CCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEe
Confidence 1222223332 3677 6666654 45699999955 34444444 4444544444 455677778888877765
Q ss_pred CCCCcceeeec-cccCeEEeeec--cccee----eecccCCeeeccccC
Q 043350 506 LDGNLTASWIA-HSSPVLKLAVG--VDHIY----SLAAHGGIRGWTFTS 547 (1133)
Q Consensus 506 ~~g~~l~~~~~-H~~~V~~l~fs--~~~L~----S~s~Dg~I~lW~l~s 547 (1133)
+.++....+.. +.+.|..+.++ ++.|+ +....++|.+||+.+
T Consensus 393 ~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 393 LDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp TTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred CCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 45665555554 35678888887 55555 445568899999765
No 228
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.44 E-value=5.9e-05 Score=83.74 Aligned_cols=236 Identities=14% Similarity=0.126 Sum_probs=127.9
Q ss_pred eEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCCCC
Q 043350 215 TMCLMVDCG-NRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWESI 293 (1133)
Q Consensus 215 V~~la~spd-~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~~~ 293 (1133)
.-+..|+++ +.++++...++.|..||..+ .....+ .+...+.+++++++|+|+.+. ++.|.+||..+.
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~---------~~~~~~-~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFT---------KQVQRV-TMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQ 83 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTT---------CCEEEE-ECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTT
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCC---------CcEEEE-eCCCceEEEEECCCCCEEEEE-CCeEEEEECCCC
Confidence 457889984 56777877889999999886 222222 245679999999999955555 567899998763
Q ss_pred c-eeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEec-CCceEEEecCCCceeEeecC-CCceeEEEe
Q 043350 294 E-KSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSD-HARARVWCAQPLSFSLWDAR-SKELLKVFN 370 (1133)
Q Consensus 294 ~-~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~-d~~i~vwss~d~~I~lWD~~-tg~~l~~~~ 370 (1133)
. ..+.....+.. ....+.+...+.+. .++.+. .... ........-.||.+. .++... +.
T Consensus 84 ~~~~~~~~~~~~~---------------~~~~~di~~d~dG~-l~~~~~~~~~~-~~~~~~~~~~l~~~d~~g~~~~-~~ 145 (297)
T 3g4e_A 84 SAVVLATVDNDKK---------------NNRFNDGKVDPAGR-YFAGTMAEETA-PAVLERHQGALYSLFPDHHVKK-YF 145 (297)
T ss_dssp EEEEEEECCTTCS---------------SEEEEEEEECTTSC-EEEEEEECCSB-TTBCCTTCEEEEEECTTSCEEE-EE
T ss_pred cEEEEEecCCCCC---------------CCCCCCEEECCCCC-EEEecCCcccc-cccccCCCcEEEEEECCCCEEE-Ee
Confidence 2 22211111100 00011111112222 111111 0000 000001223444443 233322 32
Q ss_pred cCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceE--EEEEecCCcccCCCCCEEEEEEC
Q 043350 371 IEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVR--RVATRGAGAFVDDTKRTEAMVLT 448 (1133)
Q Consensus 371 ~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~--~v~~~p~g~~~~h~~~V~sl~~s 448 (1133)
......+.++|+|+++. + +++.+.++.|..++.. ...+.+. .+... +.........++++
T Consensus 146 ~~~~~pngi~~spdg~~-------l-yv~~~~~~~i~~~~~d------~~~G~~~~~~~~~~----~~~~~~~p~g~~~d 207 (297)
T 3g4e_A 146 DQVDISNGLDWSLDHKI-------F-YYIDSLSYSVDAFDYD------LQTGQISNRRSVYK----LEKEEQIPDGMCID 207 (297)
T ss_dssp EEESBEEEEEECTTSCE-------E-EEEEGGGTEEEEEEEC------TTTCCEEEEEEEEE----CCGGGCEEEEEEEB
T ss_pred eccccccceEEcCCCCE-------E-EEecCCCCcEEEEecc------CCCCcccCcEEEEE----CCCCCCCCCeeEEC
Confidence 33344678999999985 0 3555556666532210 0011110 11111 11223456788899
Q ss_pred CCC-eEEEEecCCeEEEEeCC-CCeeEEEecCCcceeE--Ee-cCCCEEEEEec
Q 043350 449 ADG-MIWSGCTNGLLVQWDGN-GNRVSDILHHQCAVQC--FC-TYGSRMYVGYV 497 (1133)
Q Consensus 449 pdg-~L~sgs~DG~I~vWd~~-g~~l~~~~~h~~~V~~--fs-~dg~~Lasgs~ 497 (1133)
++| ..++...++.|.+||.+ |+.+..+..+...+++ |. |+++.|++++.
T Consensus 208 ~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 208 AEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 999 44444567889999995 8999888887666666 87 88888877664
No 229
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.43 E-value=0.00065 Score=86.42 Aligned_cols=359 Identities=11% Similarity=0.117 Sum_probs=200.5
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEEecCCcEEEeeCCCC-C
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWAGQECGVRFWNLEDS-Y 186 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~llas~Dg~VrvWdl~~~-~ 186 (1133)
+..+++|.+.+ |+.+| +..||..+ .. ...+........ ..|++|. .++|.+|++..+.|..|+..+. .
T Consensus 93 i~~d~~g~lWi-gT~~G-l~~yd~~~----~~-f~~~~~~~~~~~---~~i~~i~~d~~g~lwi~t~~gl~~~~~~~~~~ 162 (795)
T 4a2l_A 93 VKTDSQGRVWI-GTRDG-LSRYDEEK----DI-FQNFFYEKNGKH---LQVNGIEEISPEQLLISTPEGLIMFDIKESKF 162 (795)
T ss_dssp EEECTTSCEEE-EESSC-EEEEETTT----TE-EEEECCEETTEE---CCCCEEEEEETTEEEEEETTEEEEEETTTTEE
T ss_pred EEECCCCCEEE-EeCCc-hheeCCCC----Ce-EEeccccccCCC---ceEEEEEECCCCCEEEEECCceEEEECCCCEE
Confidence 34466776443 44555 57777652 11 222322111000 0177887 7799999955577999987542 1
Q ss_pred CcCcCCCccccCCCCCCCceeeccCCCC-eEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCe
Q 043350 187 EPGAGIGGRVRRGDEDAAPFYESANTSP-TMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPV 265 (1133)
Q Consensus 187 ~~~~gh~~~v~~g~~~~~~~~~~~h~s~-V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V 265 (1133)
... . ....... |.++..++++. |+.|+.++.|..|+...... .... ...+...|
T Consensus 163 ~~~---~--------------~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~------~~~~-~~~~~~~i 217 (795)
T 4a2l_A 163 IDD---S--------------FSTAMHKTIASTLYRQGDQ-IYIGTSTDGLYTYSITQKTF------EKVI-PILGTKQI 217 (795)
T ss_dssp ECS---S--------------SCHHHHTCCEEEEEEETTE-EEEEESSSCEEEEETTTCCE------EECC-----CCCE
T ss_pred Eec---c--------------CCCCCCcceEEEEECCCCC-EEEEECCCCEEEEeCCCCeE------EEec-CCCCCCee
Confidence 110 0 0000113 78888887775 45577665688898765111 1110 11235679
Q ss_pred EEEEEeeCCcEEEEeCCCcEEEEeCCCCc-eeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCc
Q 043350 266 LAMIFSSQGDLWSGGEGGVIKIWPWESIE-KSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHAR 344 (1133)
Q Consensus 266 ~sl~fsp~g~L~Sgs~DgtI~iWdl~~~~-~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~ 344 (1133)
.++...++|.|+.|+.++-|.+|+..+.. ..+...+.... . ........+..|..
T Consensus 218 ~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~-----------------------~-l~~~~i~~i~~d~~ 273 (795)
T 4a2l_A 218 QAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPK-----------------------S-ISSNYIRSLAMDSQ 273 (795)
T ss_dssp EEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTT-----------------------S-CSCSBEEEEEECTT
T ss_pred EEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCcc-----------------------c-cCCCeEEEEEEcCC
Confidence 99999888887777766558888876531 11111100000 0 01122223333444
Q ss_pred eEEEecCCCceeEeecCCCceeEEEec-------CCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccccccccee
Q 043350 345 ARVWCAQPLSFSLWDARSKELLKVFNI-------EGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAI 417 (1133)
Q Consensus 345 i~vwss~d~~I~lWD~~tg~~l~~~~~-------h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~ 417 (1133)
-.+|-+.++.|.+||..++........ ....|.++...+++. +..|+.++-+..++....
T Consensus 274 g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~----------lWigt~~~Gl~~~~~~~~--- 340 (795)
T 4a2l_A 274 NRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG----------MWLGTYFGGLNYYHPIRN--- 340 (795)
T ss_dssp SCEEEEESSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC----------EEEEESSSCEEEECGGGG---
T ss_pred CCEEEEeCChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC----------EEEEECCCCeEEeCCCcc---
Confidence 556766666888999877665433211 224588888888775 455665554432221100
Q ss_pred eccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeCCCCeeEEEec---------CCcceeEEe--
Q 043350 418 MGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGNGNRVSDILH---------HQCAVQCFC-- 486 (1133)
Q Consensus 418 ~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~g~~l~~~~~---------h~~~V~~fs-- 486 (1133)
........+. .-.-....|.++....+|.|+.|..++-|..|+........+.. ....|.++.
T Consensus 341 -----~~~~~~~~~~-~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d 414 (795)
T 4a2l_A 341 -----RFKNIRNIPY-KNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD 414 (795)
T ss_dssp -----SSEEECCCTT-SSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE
T ss_pred -----cceEEcCCCC-CCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc
Confidence 0111100000 00112346899999999989999998889999986544444421 235677743
Q ss_pred cCCCEEEEEecCCeEEEEeCCCCcceeeec-----cccCeEEeeec-ccceeeecccCCeeecccc
Q 043350 487 TYGSRMYVGYVSGYLQILDLDGNLTASWIA-----HSSPVLKLAVG-VDHIYSLAAHGGIRGWTFT 546 (1133)
Q Consensus 487 ~dg~~Lasgs~DG~I~vwd~~g~~l~~~~~-----H~~~V~~l~fs-~~~L~S~s~Dg~I~lW~l~ 546 (1133)
.+|+.|++|+.++.|.+||..+.....+.. +...|.++..+ ...|+.++. +.|..|+..
T Consensus 415 ~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~ 479 (795)
T 4a2l_A 415 EKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPE 479 (795)
T ss_dssp TTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETT
T ss_pred CCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCC
Confidence 456658899988889999987544444432 34578888887 455555555 567777743
No 230
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=98.43 E-value=1.4e-06 Score=102.85 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=27.2
Q ss_pred cceEEEEEEcCCCCCCc----hhhhhhhcCCCCCccEEEEeeeeccc
Q 043350 572 VRILVGTWNVGQGRASH----ESLLSWLGSVSSDVGIVAVGLQEVEM 614 (1133)
Q Consensus 572 lrI~v~TWNv~~~~~~~----~~l~~wl~~~~~~~di~vig~QE~~~ 614 (1133)
-.+.|.||||++..... +.|.+||.. .+||| |+|||+..
T Consensus 148 ~~LKI~TwNVnGl~~~~kr~~~~i~~~I~~--~~pDI--VcLQEtk~ 190 (467)
T 2j63_A 148 RMYKFITWNVAGLRGLLKKNASALRAFMEA--EKPDV--LCLQETKL 190 (467)
T ss_dssp TEEEEEEEECSCHHHHHHHCTTHHHHHHHH--HCCSE--EEEECCCC
T ss_pred CCeEEEEEEcCCCcccccccHHHHHHHHHH--cCCCE--EEEEeccc
Confidence 35788999999753322 357888864 45775 67999864
No 231
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=98.42 E-value=1.2e-07 Score=103.30 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=25.5
Q ss_pred eEEEEEEcCCCCCCch-hhhhhhcCCCCCccEEEEeeeeccc
Q 043350 574 ILVGTWNVGQGRASHE-SLLSWLGSVSSDVGIVAVGLQEVEM 614 (1133)
Q Consensus 574 I~v~TWNv~~~~~~~~-~l~~wl~~~~~~~di~vig~QE~~~ 614 (1133)
+.+.|||+++...... .+.+++.. .+||| |+|||+..
T Consensus 2 l~v~t~Ni~~~~~~~~~~i~~~i~~--~~~DI--i~LQE~~~ 39 (259)
T 2jc5_A 2 LKIISANVNGIRSAYKKGFYEYIAA--SGADI--VCVQELKA 39 (259)
T ss_dssp EEEEEEECSSHHHHHHTTHHHHHHH--TTCSE--EEEECCCC
T ss_pred cEEEEEeeccHHHHHHhHHHHHHHh--cCCCE--EEEEEecc
Confidence 5678999986543333 37777763 46786 67899964
No 232
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=98.42 E-value=1.3e-06 Score=93.35 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=64.3
Q ss_pred cceEEEEEEcCCCCCCc--hhhhhhhcCCCCCccEEEEeeeecccccchhhhhhhhhhhcCCCCcchhhHHHHHhhhcCC
Q 043350 572 VRILVGTWNVGQGRASH--ESLLSWLGSVSSDVGIVAVGLQEVEMGAGFLAMSAAKETVGLEGSAIGQWWQDTIGKALDE 649 (1133)
Q Consensus 572 lrI~v~TWNv~~~~~~~--~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~ 649 (1133)
..+.+.|||+++..... +.+.+++.. .+||| |+|||+......+ . .+ .+ .
T Consensus 6 ~~lri~t~Nv~g~~~~~~~~~~~~~i~~--~~~DI--v~LQE~~~~~~~~-----------------~----~l--~~-~ 57 (238)
T 1vyb_A 6 SHITILTLNINGLNSAIKRHRLASWIKS--QDPSV--CCIQETHLTCRDT-----------------H----RL--KI-K 57 (238)
T ss_dssp CCEEEEEEECSCCCSHHHHHHHHHHHHH--HCCSE--EEEECCCCCTTSG-----------------G----GC--CC-T
T ss_pred CcceEEEEecccCCchhhHHHHHHHHHH--cCCCE--EEEecccCCCCCc-----------------h----hH--hh-C
Confidence 35778899998765433 567778863 45775 6899985421100 0 01 11 2
Q ss_pred CCcEEEEee--eecceEEEEEEEecccccccCceeecccccccccccccceeEEEEEEEcCeEEEEEecccccChH
Q 043350 650 GTTFERMGS--RQLAGLLISFWVRKNLRTHVGDVDAAAVPCGFGRAIGNKGGVGLRIRVYDRTICFVNCHLAAHLE 723 (1133)
Q Consensus 650 ~~~y~~v~~--~~l~g~~l~v~~~~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~~r~~~~~~~~~fvn~Hlaa~~~ 723 (1133)
++.|..... ..-.| +++|.|..+...+..+... ...-.+.+++.+.+..+.++|+|+.....
T Consensus 58 ~y~~~~~~~~~~~~~G--vail~r~~~~~~~~~~~~~----------~~~r~i~~~~~~~~~~~~v~~~y~p~~~~ 121 (238)
T 1vyb_A 58 GWRKIYQANGKQKKAG--VAILVSDKTDFKPTKIKRD----------KEGHYIMVKGSIQQEELTILNIYAPNTGA 121 (238)
T ss_dssp TCCEEEEECCSSSSCC--EEEEECTTCCCEEEEEEEC----------TTSSEEEEEEEETTEEEEEEEEECCSSSH
T ss_pred CCCeEEEccCCCCCce--EEEEEeCCCCccccceeEc----------CCCcEEEEEEEeCCCcEEEEEEecCCCCc
Confidence 454432222 12234 5678887653333222111 11125667788888999999999988764
No 233
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=98.39 E-value=2.1e-07 Score=103.04 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=27.1
Q ss_pred ccceEEEEEEcCCCCCCchh-hhhhhcCCCCCccEEEEeeeecccc
Q 043350 571 DVRILVGTWNVGQGRASHES-LLSWLGSVSSDVGIVAVGLQEVEMG 615 (1133)
Q Consensus 571 ~lrI~v~TWNv~~~~~~~~~-l~~wl~~~~~~~di~vig~QE~~~~ 615 (1133)
...+.+.|||+.+....... +..+|.. .+|| ||+|||+...
T Consensus 26 ~~~l~v~t~Ni~~~~~~~~~~i~~~i~~--~~~D--Ii~LQE~~~~ 67 (285)
T 2o3h_A 26 PATLKIASWNVDGLRAWIKKKGLDWVKE--EAPD--ILCLQETKCS 67 (285)
T ss_dssp BCCEEEEEEECSSHHHHHHTTHHHHHHH--HCCS--EEEEECCCCC
T ss_pred ccceEEEEEecccChhhhhhhHHHHHHh--cCCC--EEEEEEeecc
Confidence 44678889999864332222 6777753 4577 5789999653
No 234
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.36 E-value=5.2e-05 Score=86.92 Aligned_cols=272 Identities=9% Similarity=0.030 Sum_probs=150.1
Q ss_pred eCCCCEEEEEeC-----CCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEe----------CCCc
Q 043350 221 DCGNRLVWTGHK-----DGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGG----------EGGV 284 (1133)
Q Consensus 221 spd~~~LaSgs~-----Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs----------~Dgt 284 (1133)
.|+++.++.... ++.|.+.|... .+.+..+..-..+ .++++|+|+ |+.++ .++.
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t--------~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~ 110 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEA--------GRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDY 110 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTT--------TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCC--------CeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCE
Confidence 568988888766 67999999876 1334444444445 399999999 76654 4678
Q ss_pred EEEEeCCCCc--eeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCc-eEEEec-CCCceeEeec
Q 043350 285 IKIWPWESIE--KSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHAR-ARVWCA-QPLSFSLWDA 360 (1133)
Q Consensus 285 I~iWdl~~~~--~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~-i~vwss-~d~~I~lWD~ 360 (1133)
|.+||..+.. ..+........ .+ ...+.. +.++.|++ +.+.+. .++.|.++|+
T Consensus 111 VsviD~~t~~v~~~I~v~~g~r~-~~---------------------g~~P~~-~a~spDGk~lyVan~~~~~~VsVID~ 167 (386)
T 3sjl_D 111 VEVFDPVTLLPTADIELPDAPRF-LV---------------------GTYPWM-TSLTPDGKTLLFYQFSPAPAVGVVDL 167 (386)
T ss_dssp EEEECTTTCCEEEEEEETTCCCC-CB---------------------SCCGGG-EEECTTSSEEEEEECSSSCEEEEEET
T ss_pred EEEEECCCCeEEEEEECCCcccc-cc---------------------CCCCce-EEEcCCCCEEEEEEcCCCCeEEEEEC
Confidence 9999998742 22222110000 00 001111 11222222 222333 3689999999
Q ss_pred CCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCC
Q 043350 361 RSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTK 440 (1133)
Q Consensus 361 ~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~ 440 (1133)
.+++.+.++..... ...+....+. +++.+.||++........ +.+.... . ..+.....
T Consensus 168 ~t~~vv~tI~v~g~---~~~~P~g~~~---------~~~~~~DG~~~~v~~~~~-------g~v~~~~-~--~~~~~~~~ 225 (386)
T 3sjl_D 168 EGKAFKRMLDVPDC---YHIFPTAPDT---------FFMHCRDGSLAKVAFGTE-------GTPEITH-T--EVFHPEDE 225 (386)
T ss_dssp TTTEEEEEEECCSE---EEEEEEETTE---------EEEEETTSCEEEEECCSS-------SCCEEEE-C--CCCSCTTS
T ss_pred CCCcEEEEEECCCc---ceeecCCCce---------eEEECCCCCEEEEECCCC-------CeEEEee-c--ceeccccc
Confidence 99999998865432 1111112222 445555665531111100 0010000 0 00111111
Q ss_pred CEE-EEEE-CCCCeEEEEecCCeEEEEeCCCC---eeEEEe------------cCCcceeEEecCCCEEEEEec------
Q 043350 441 RTE-AMVL-TADGMIWSGCTNGLLVQWDGNGN---RVSDIL------------HHQCAVQCFCTYGSRMYVGYV------ 497 (1133)
Q Consensus 441 ~V~-sl~~-spdg~L~sgs~DG~I~vWd~~g~---~l~~~~------------~h~~~V~~fs~dg~~Lasgs~------ 497 (1133)
.+. ...| .++|.++..+.+|.|.+.|..+. .+..+. ........+++++++|++...
T Consensus 226 ~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~ 305 (386)
T 3sjl_D 226 FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR 305 (386)
T ss_dssp CBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC
T ss_pred cccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccc
Confidence 111 1234 46774444666899999999653 232232 112233458999998888753
Q ss_pred ----CCeEEEEeCCC-CcceeeeccccCeEEeeec--cc-ceee-ecccCCeeeccccCC
Q 043350 498 ----SGYLQILDLDG-NLTASWIAHSSPVLKLAVG--VD-HIYS-LAAHGGIRGWTFTSP 548 (1133)
Q Consensus 498 ----DG~I~vwd~~g-~~l~~~~~H~~~V~~l~fs--~~-~L~S-~s~Dg~I~lW~l~s~ 548 (1133)
...|.++|+.. +.+..+.-- ..+.+|+++ ++ +|++ ...++.|.++|..+.
T Consensus 306 hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~ 364 (386)
T 3sjl_D 306 HKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG 364 (386)
T ss_dssp TTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTC
T ss_pred cCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 25799999974 566655432 267788888 54 5666 455899999997654
No 235
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.32 E-value=2.5e-05 Score=88.86 Aligned_cols=268 Identities=10% Similarity=-0.029 Sum_probs=144.7
Q ss_pred CCeEEEEEeCCCCEEEEEeC--CCeEEEEeCCCCCCCCCCCccc-ccccccCCCCeEEEEEeeCCcEEEEeC------CC
Q 043350 213 SPTMCLMVDCGNRLVWTGHK--DGKIRSWKMDQTLDDANNPFKE-GLSWQAHRGPVLAMIFSSQGDLWSGGE------GG 283 (1133)
Q Consensus 213 s~V~~la~spd~~~LaSgs~--Dg~V~vWd~~~~~~~~~~~~~~-~~~l~gH~~~V~sl~fsp~g~L~Sgs~------Dg 283 (1133)
..+..++++++|+++++... ++.++||.++.+.. .++.. .....+|-..+.+|+|+++|+|+.+.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~---~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL---IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE---EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe---ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence 46899999999999988642 34366666642100 00000 011234667899999999998544432 57
Q ss_pred cEEEEeCCCCc--eeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEec---CCCceeEe
Q 043350 284 VIKIWPWESIE--KSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCA---QPLSFSLW 358 (1133)
Q Consensus 284 tI~iWdl~~~~--~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss---~d~~I~lW 358 (1133)
.|.+||+.+.. ..+.+...... .........+...++.+.+... .++.|.+|
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~-----------------------~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~ 150 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITL-----------------------SNSFVNDLAVDLIHNFVYISDPAPDDKAALIRV 150 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSC-----------------------TTCCCCEEEEETTTTEEEEEECCSGGGCEEEEE
T ss_pred eEEEEECCCCeEEEEEECChhhcc-----------------------cccccceEEEecCCCEEEEEcCccCCCCeEEEE
Confidence 89999987632 22222111000 0000011111111233333334 67889999
Q ss_pred ecCCCceeEEEecCCccee-EEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccC
Q 043350 359 DARSKELLKVFNIEGHIEN-RVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVD 437 (1133)
Q Consensus 359 D~~tg~~l~~~~~h~~~v~-~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~ 437 (1133)
|+.+++..+.+..|..... ...+.+++.. +.+.+.+++++.|
T Consensus 151 d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~---------~~~~~~~g~~~~~---------------------------- 193 (343)
T 2qe8_A 151 DLQTGLAARVLQGYPGIAPEDIDLVIDGVP---------VQIGQPDGTVIRP---------------------------- 193 (343)
T ss_dssp ETTTCCEEEECTTCTTTSCCSCCCEETTEE---------CBEECTTSCEECC----------------------------
T ss_pred ECCCCCEEEEecCCCcccccccceeECCEE---------EEeccCCCceece----------------------------
Confidence 9998887776654322110 1223333333 3344444443111
Q ss_pred CCCCEEEEEECCCC-eEEEEecCC-eEEEEeCC----CC-----eeE--EEecCCcc--eeEEecCCCEEEEEecCCeEE
Q 043350 438 DTKRTEAMVLTADG-MIWSGCTNG-LLVQWDGN----GN-----RVS--DILHHQCA--VQCFCTYGSRMYVGYVSGYLQ 502 (1133)
Q Consensus 438 h~~~V~sl~~spdg-~L~sgs~DG-~I~vWd~~----g~-----~l~--~~~~h~~~--V~~fs~dg~~Lasgs~DG~I~ 502 (1133)
...+..++++|+| .|+.+..++ .|..++.. +. ... ...++... =.+++++|.+.++...++.|.
T Consensus 194 -~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~ 272 (343)
T 2qe8_A 194 -HLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIG 272 (343)
T ss_dssp -CCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEE
T ss_pred -ecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEE
Confidence 1234568888999 788777666 45444421 11 000 11112112 235889999888888999999
Q ss_pred EEeC-CCCcceeeec-cccCeEEeeec--ccceeeecccCCeeecc
Q 043350 503 ILDL-DGNLTASWIA-HSSPVLKLAVG--VDHIYSLAAHGGIRGWT 544 (1133)
Q Consensus 503 vwd~-~g~~l~~~~~-H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~ 544 (1133)
+||. .++....... +...+.+++|+ +..+++.+..+.+-+|.
T Consensus 273 ~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 273 VITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp EEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred EEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 9999 6754322221 24568899997 55555555444444443
No 236
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=98.32 E-value=3e-06 Score=92.00 Aligned_cols=37 Identities=24% Similarity=0.485 Sum_probs=27.2
Q ss_pred eEEEEEEcCCCCCCchhhhhhhcCCCCCccEEEEeeeeccc
Q 043350 574 ILVGTWNVGQGRASHESLLSWLGSVSSDVGIVAVGLQEVEM 614 (1133)
Q Consensus 574 I~v~TWNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~~ 614 (1133)
+.+.|||+++.....+.+.+++.. .+||| |+|||+..
T Consensus 2 lrv~t~Nv~g~~~~~~~i~~~i~~--~~~Di--i~lQE~~~ 38 (257)
T 2voa_A 2 LKIATFNVNSIRSRLHIVIPWLKE--NKPDI--LCMQETKV 38 (257)
T ss_dssp EEEEEEECSCGGGTHHHHHHHHHH--HCCSE--EEEECCCC
T ss_pred eEEEEEecCChHHHHHHHHHHHhh--cCCCE--EEEEEeec
Confidence 567899998766555667778763 45775 67999964
No 237
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.32 E-value=2.3e-05 Score=98.28 Aligned_cols=247 Identities=8% Similarity=0.095 Sum_probs=131.1
Q ss_pred CCCCeEEEEEeCCCCEEEE-----EeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCc
Q 043350 211 NTSPTMCLMVDCGNRLVWT-----GHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGV 284 (1133)
Q Consensus 211 h~s~V~~la~spd~~~LaS-----gs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~Dgt 284 (1133)
++..+..++|||||++||- |+.+.+|++||+.++ ......-+.....+++|+ ||+ |+.++.+..
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg---------~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~ 196 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESK---------QPLETPLKDVKFSGISWL-GNEGFFYSSYDKP 196 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTC---------SEEEEEEEEEESCCCEEE-TTTEEEEEESSCC
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCC---------CCCccccCCceeccEEEe-CCCEEEEEEecCc
Confidence 3346788899999999884 333468999999872 211111111113578999 999 888887744
Q ss_pred -------------EEEEeCCCCce--eeEeCC-C--CceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceE
Q 043350 285 -------------IKIWPWESIEK--SLSLKP-E--EKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARAR 346 (1133)
Q Consensus 285 -------------I~iWdl~~~~~--~l~~~~-~--~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~ 346 (1133)
|++|++.+... .+.+.. + ....... ...+++..+++.+..+
T Consensus 197 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~------------------~~SpDg~~l~~~~~~~--- 255 (693)
T 3iuj_A 197 DGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGA------------------TVTEDDRFLLISAANS--- 255 (693)
T ss_dssp C-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEE------------------EECTTSCEEEEEEESS---
T ss_pred ccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEE------------------EEcCCCCEEEEEEccC---
Confidence 89999876321 112211 1 1111111 0112333222222100
Q ss_pred EEecCCCceeEeecCCCc-eeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCC---ccccccccccceeeccCC
Q 043350 347 VWCAQPLSFSLWDARSKE-LLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKE---KPHGFLQRSRNAIMGAAD 422 (1133)
Q Consensus 347 vwss~d~~I~lWD~~tg~-~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg---~i~~~~~~~~~~~~~~~~ 422 (1133)
.....|.+||+.++. ....+..+....... +++++.. + ++.+..++ .|..++... +...
T Consensus 256 ---~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~-------l-~~~t~~~~~~~~l~~~d~~~-----~~~~ 318 (693)
T 3iuj_A 256 ---TSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGST-------L-YLLTNRDAPNRRLVTVDAAN-----PGPA 318 (693)
T ss_dssp ---SSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTE-------E-EEEECTTCTTCEEEEEETTS-----CCGG
T ss_pred ---CCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCE-------E-EEEECCCCCCCEEEEEeCCC-----CCcc
Confidence 223578899988764 445555555544444 5565554 0 33443332 222111100 0000
Q ss_pred ceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEE-ecCC--eEEEEeCCCCeeEEEec-CCcceeE--EecCCCEEEEE
Q 043350 423 AVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSG-CTNG--LLVQWDGNGNRVSDILH-HQCAVQC--FCTYGSRMYVG 495 (1133)
Q Consensus 423 ~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sg-s~DG--~I~vWd~~g~~l~~~~~-h~~~V~~--fs~dg~~Lasg 495 (1133)
.... +..+...+. .+++++ .|+.. ..+| .|++|+++|.....+.. ....+.. ++++++.|+..
T Consensus 319 ~~~~--------l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~ 388 (693)
T 3iuj_A 319 HWRD--------LIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFG 388 (693)
T ss_dssp GCEE--------EECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEE
T ss_pred ccEE--------EecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEE
Confidence 0011 112222232 567777 55544 4555 68899998877766654 3344544 67788877766
Q ss_pred ecC----CeEEEEeCCCCcceeee
Q 043350 496 YVS----GYLQILDLDGNLTASWI 515 (1133)
Q Consensus 496 s~D----G~I~vwd~~g~~l~~~~ 515 (1133)
..+ ++|+.||+.+.....+.
T Consensus 389 ~ss~~tP~~l~~~d~~~g~~~~l~ 412 (693)
T 3iuj_A 389 FENYAQPPTLYRFEPKSGAISLYR 412 (693)
T ss_dssp EECSSSCCEEEEECTTTCCEEEEE
T ss_pred ecCCCCCCEEEEEECCCCeEEEEE
Confidence 655 89999998754333343
No 238
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.30 E-value=8.1e-06 Score=93.96 Aligned_cols=76 Identities=9% Similarity=-0.051 Sum_probs=57.6
Q ss_pred EEEEecCCeEEEEeCC-CCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCCCc---ceee------e---cc
Q 043350 453 IWSGCTNGLLVQWDGN-GNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGNL---TASW------I---AH 517 (1133)
Q Consensus 453 L~sgs~DG~I~vWd~~-g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~~---l~~~------~---~H 517 (1133)
++++..||.|.+||+. +.... +...|.| |+|+| ++.|..||+|++|+.++.. .+++ . +|
T Consensus 139 ~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~ 212 (388)
T 1xip_A 139 LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVE 212 (388)
T ss_dssp EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTT
T ss_pred EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCC
Confidence 6778899999999995 44432 3456777 88888 7889999999999988755 4444 2 47
Q ss_pred ccCeEEeeec--ccceeee
Q 043350 518 SSPVLKLAVG--VDHIYSL 534 (1133)
Q Consensus 518 ~~~V~~l~fs--~~~L~S~ 534 (1133)
...|.+|.|. +.++++-
T Consensus 213 ~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 213 EYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp TSEEEEEEESSSSEEEEEE
T ss_pred CeeEEEEEEecCCeEEEEE
Confidence 8889999998 5555553
No 239
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=98.29 E-value=1.3e-06 Score=94.54 Aligned_cols=120 Identities=16% Similarity=0.109 Sum_probs=67.6
Q ss_pred cceEEEEEEcCCCCCCchhhhhhhcCCCCCccEEEEeeeecccccchhhhhhhhhhhcCCCCcchhhHHHHHhhhcCCCC
Q 043350 572 VRILVGTWNVGQGRASHESLLSWLGSVSSDVGIVAVGLQEVEMGAGFLAMSAAKETVGLEGSAIGQWWQDTIGKALDEGT 651 (1133)
Q Consensus 572 lrI~v~TWNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~ 651 (1133)
..+.+.|||+++.....+.|..|+.. .+||| |+|||+...... .+. ...+
T Consensus 18 ~~lri~s~Nv~~~~~~~~~l~~~i~~--~~~DI--v~lQE~~~~~~~-----------------------~~~--~~~g- 67 (245)
T 1wdu_A 18 PPYRVLQANLQRKKLATAELAIEAAT--RKAAI--ALIQEPYVGGAK-----------------------SMK--GFRG- 67 (245)
T ss_dssp CCEEEEEEECTTCHHHHHHHHHHHHH--HTCSE--EEEESCCC-----------------------------C--CCSS-
T ss_pred cceeeeeeeccccHHHHHHHHHHHhh--cCCCE--EEEEcccccCCc-----------------------ccc--CCCc-
Confidence 35788899999766555678888874 45775 789998542100 000 0112
Q ss_pred cEEEEeee----ecceEEEEEEEec-ccccccCceeecccccccccccccceeEEEEEEEcCeEEEEEecccccChHHHH
Q 043350 652 TFERMGSR----QLAGLLISFWVRK-NLRTHVGDVDAAAVPCGFGRAIGNKGGVGLRIRVYDRTICFVNCHLAAHLEAVN 726 (1133)
Q Consensus 652 ~y~~v~~~----~l~g~~l~v~~~~-~~~~~i~~v~~~~v~~G~~~~~gnKG~v~~r~~~~~~~~~fvn~Hlaa~~~~~~ 726 (1133)
|..+... .-.|. ++|.++ .+. + . .+. ..-..|++.+.+.+.+..|.|+|+|+..+.. .+
T Consensus 68 -y~~~~~~~~~~~~~Gv--aIl~~~~~~~--~--~---~~~-----~~~~~~~~~~~i~~~~~~~~v~~vy~p~~~~-~~ 131 (245)
T 1wdu_A 68 -VRVFQSTAQGDGTVKA--AIAVFDHDLD--V--I---QYP-----QLTTNNIVVVGIRTRAWEITLVSYYFEPDKP-IE 131 (245)
T ss_dssp -CEEEECCCCTTCCCCE--EEEECCSSCE--E--E---ECT-----TTCCSSEEEEEEECSSCEEEEEEEECCTTSC-SH
T ss_pred -ceEeccccccCCCCCe--EEEEECCCcc--e--E---Eec-----ccccCCEEEEEEEcCCCcEEEEEEEeCCCCC-HH
Confidence 2222211 12344 455544 332 1 0 111 1235678888998888899999999987753 23
Q ss_pred HHHHHHHHHHH
Q 043350 727 RRNADYDHIYR 737 (1133)
Q Consensus 727 ~Rn~d~~~i~~ 737 (1133)
.+.+.+..+++
T Consensus 132 ~~~~~l~~~~~ 142 (245)
T 1wdu_A 132 SYLEQIKRVER 142 (245)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34445555554
No 240
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.29 E-value=0.0028 Score=80.50 Aligned_cols=356 Identities=10% Similarity=0.167 Sum_probs=195.7
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCC-ccccccceEEEEE-eCCCCeEE-ecCCcEEEeeCCCC
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPL-KETQAGRFLRNIA-CTDTQLWA-GQECGVRFWNLEDS 185 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~-~~~~~g~~V~~v~-s~dg~lla-s~Dg~VrvWdl~~~ 185 (1133)
+..+++|.+.+ |+.+| +.+++.. ... ...+..... ...-....|.++. ..+|.+|+ +.++.|..|+....
T Consensus 268 i~~d~~g~lWi-gt~~G-l~~~~~~----~~~-~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~ 340 (795)
T 4a2l_A 268 LAMDSQNRLWI-GTFND-LNIYHEG----TDS-FASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRN 340 (795)
T ss_dssp EEECTTSCEEE-EESSC-EEEEETT----TTE-EEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGG
T ss_pred EEEcCCCCEEE-EeCCh-hheEcCC----CCe-EEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcc
Confidence 44466777544 33445 5666654 222 222221111 0111224789998 88999999 56689999986542
Q ss_pred -CCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCccccccc------
Q 043350 186 -YEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSW------ 258 (1133)
Q Consensus 186 -~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l------ 258 (1133)
..... +. +.........|.++..++++. |+.|+.++-|..|+..... +.....-
T Consensus 341 ~~~~~~-~~-----------~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~------~~~~~~~~~~~~~ 401 (795)
T 4a2l_A 341 RFKNIR-NI-----------PYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQR------FTSYTLQEDESAR 401 (795)
T ss_dssp SSEEEC-CC-----------TTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCC------EEEECCC------
T ss_pred cceEEc-CC-----------CCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCc------EEEEecCCCCccc
Confidence 11110 00 000112334699999988776 6778888789999987511 1111100
Q ss_pred ccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCc-eeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeE
Q 043350 259 QAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIE-KSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIK 336 (1133)
Q Consensus 259 ~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~-~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~ 336 (1133)
.-....|.+++..++|. |+.|+.++-|.+||..+.. ..+.. .... .+.. ..
T Consensus 402 ~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~-~~~~-------------------------l~~~-~v 454 (795)
T 4a2l_A 402 GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQ-RNSQ-------------------------LVNE-NV 454 (795)
T ss_dssp CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECT-TTSC-------------------------CSCS-CE
T ss_pred CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeec-CCCC-------------------------cCCC-ee
Confidence 01246799999999999 9999998889999987532 11110 0000 0111 11
Q ss_pred EEEecCCceEEEecCCCceeEeecCCCceeEEEec------CCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccc
Q 043350 337 CMLSDHARARVWCAQPLSFSLWDARSKELLKVFNI------EGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFL 410 (1133)
Q Consensus 337 ~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~------h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~ 410 (1133)
..+..|..-.+|-+..+.+.+||..+++....... ....|.++...+++.+ .+ |+..|.. .++
T Consensus 455 ~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l---------Wi-gt~~Gl~-~~~ 523 (795)
T 4a2l_A 455 YAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRL---------WI-GGEEGLS-VFK 523 (795)
T ss_dssp EEEEECSSSCEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCE---------EE-EESSCEE-EEE
T ss_pred EEEEECCCCCEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCE---------EE-EeCCceE-EEe
Confidence 22223334446655557788888877654332211 2345778888888765 44 3334433 222
Q ss_pred ccccceeeccCCceEEEEEecC-CcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeCCCCeeEEEec----CCcceeEE
Q 043350 411 QRSRNAIMGAADAVRRVATRGA-GAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGNGNRVSDILH----HQCAVQCF 485 (1133)
Q Consensus 411 ~~~~~~~~~~~~~V~~v~~~p~-g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~g~~l~~~~~----h~~~V~~f 485 (1133)
... ..+ .+... ..-......|.++...++|.|+.|+.. -|..||..+..+..+.. ....|.++
T Consensus 524 ~~~--------~~~---~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i 591 (795)
T 4a2l_A 524 QEG--------LDI---QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGI 591 (795)
T ss_dssp EET--------TEE---EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECGGGTCSCSCEEEE
T ss_pred CCC--------CeE---EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEEEeCCCCCCchhheEEE
Confidence 110 011 11100 000112356889999999977777766 57889986666655533 23457774
Q ss_pred ec--CCCEEEEEecCCeEEEEeCCCCcceeeecccc----Ce--EEeeec-ccceeeecccCCeee
Q 043350 486 CT--YGSRMYVGYVSGYLQILDLDGNLTASWIAHSS----PV--LKLAVG-VDHIYSLAAHGGIRG 542 (1133)
Q Consensus 486 s~--dg~~Lasgs~DG~I~vwd~~g~~l~~~~~H~~----~V--~~l~fs-~~~L~S~s~Dg~I~l 542 (1133)
.. +| .|+.|+. +.|..||.+...+..+..+.+ .+ .++... ...|+-++.+|.+++
T Consensus 592 ~~d~~g-~lWi~t~-~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~Gl~~~ 655 (795)
T 4a2l_A 592 LEDSFG-RLWLSTN-RGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGGINGITTF 655 (795)
T ss_dssp EECTTS-CEEEEET-TEEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSCEEEEETTEEEEE
T ss_pred EECCCC-CEEEEcC-CceEEEcCCCCcEEEcCCcCCCccccCccCceeECCCCeEEEecCCceEEE
Confidence 44 44 4666665 457788887655555544432 22 344444 556777777775443
No 241
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.28 E-value=0.00043 Score=79.60 Aligned_cols=272 Identities=6% Similarity=-0.063 Sum_probs=145.7
Q ss_pred eCCCCEEEEEeC--CC---eEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEe----------CCCc
Q 043350 221 DCGNRLVWTGHK--DG---KIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGG----------EGGV 284 (1133)
Q Consensus 221 spd~~~LaSgs~--Dg---~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs----------~Dgt 284 (1133)
.|+++++++... .. +|.++|...+ +.+..+.....+ .++|+|+|+ |+.+. .+++
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~--------~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~ 98 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSG--------SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDY 98 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCC--------eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCe
Confidence 357777777653 22 8899998751 333344433344 899999999 66664 3688
Q ss_pred EEEEeCCCCce--eeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCc-eEEEec-CCCceeEeec
Q 043350 285 IKIWPWESIEK--SLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHAR-ARVWCA-QPLSFSLWDA 360 (1133)
Q Consensus 285 I~iWdl~~~~~--~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~-i~vwss-~d~~I~lWD~ 360 (1133)
|.+||..+... .+........ ..+ ..+. .+.++.|++ +.+.+. .++.|.++|
T Consensus 99 v~viD~~t~~~~~~i~~~~~~~~-~~g---------------------~~p~-~~~~spDG~~l~v~n~~~~~~v~viD- 154 (373)
T 2mad_H 99 VEVFDPVTFLPIADIELPDAPRF-DVG---------------------PYSW-MNANTPNNADLLFFQFAAGPAVGLVV- 154 (373)
T ss_pred EEEEECCCCcEEEEEECCCcccc-ccC---------------------CCcc-ceEECCCCCEEEEEecCCCCeEEEEE-
Confidence 99999876321 1111100000 000 0011 111222222 112222 257899999
Q ss_pred CCCceeEE-EecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCC
Q 043350 361 RSKELLKV-FNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDT 439 (1133)
Q Consensus 361 ~tg~~l~~-~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~ 439 (1133)
.+++.+.. +..... +.+.|++.. .+++.+.||++..++. ..... ......+ .+.+..
T Consensus 155 ~t~~~~~~~i~~~~~----~~~~~~~~~--------~~~~~~~dg~~~~vd~-~g~~~-------~~~~~~~--~~~~~~ 212 (373)
T 2mad_H 155 QGGSSDDQLLSSPTC----YHIHPGAPS--------TFYLLCAQGGLAKTDH-AGGAA-------GAGLVGA--MLTAAQ 212 (373)
T ss_pred CCCCEEeEEcCCCce----EEEEeCCCc--------eEEEEcCCCCEEEEEC-CCcEE-------EEEeccc--cccCCc
Confidence 99998877 654322 344454432 1455666666642221 11110 0000000 000111
Q ss_pred CCEEEEEECCCC-eEEEEecCCeEEEEeCCCC---eeEEEecC----------Cc--ceeEEecCCCEEEEEec------
Q 043350 440 KRTEAMVLTADG-MIWSGCTNGLLVQWDGNGN---RVSDILHH----------QC--AVQCFCTYGSRMYVGYV------ 497 (1133)
Q Consensus 440 ~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g~---~l~~~~~h----------~~--~V~~fs~dg~~Lasgs~------ 497 (1133)
.......+.+++ .++..+..+.+.+.|..+. .+..+... .. ....++++++.|+++..
T Consensus 213 p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~ 292 (373)
T 2mad_H 213 NLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWK 292 (373)
T ss_pred ceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCccc
Confidence 111223345555 4343446788999998542 22222211 11 12348999998888754
Q ss_pred ----CCeEEEEeCCC-CcceeeeccccCeEEeeec--cc-ceeeec-ccCCeeeccccCCC
Q 043350 498 ----SGYLQILDLDG-NLTASWIAHSSPVLKLAVG--VD-HIYSLA-AHGGIRGWTFTSPS 549 (1133)
Q Consensus 498 ----DG~I~vwd~~g-~~l~~~~~H~~~V~~l~fs--~~-~L~S~s-~Dg~I~lW~l~s~~ 549 (1133)
++.|.++|... +.+..+.. .....+++|+ ++ .++++. .++.|.+||+.+..
T Consensus 293 ~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 293 LHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred ccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 35899999985 55666642 3357889999 66 677777 58999999987644
No 242
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.27 E-value=0.00025 Score=79.78 Aligned_cols=233 Identities=11% Similarity=0.022 Sum_probs=124.3
Q ss_pred eEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCCCC
Q 043350 215 TMCLMVDCG-NRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWESI 293 (1133)
Q Consensus 215 V~~la~spd-~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~~~ 293 (1133)
..+.+|+|+ +.+++++..++.|..|+..+ .....+. +...|.+++|+++|+++.++.++ |.+||..+.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~---------~~~~~~~-~~~~v~~i~~~~dg~l~v~~~~g-l~~~d~~~g 119 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLAS---------GRKTVHA-LPFMGSALAKISDSKQLIASDDG-LFLRDTATG 119 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTT---------TEEEEEE-CSSCEEEEEEEETTEEEEEETTE-EEEEETTTC
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCC---------CcEEEEE-CCCcceEEEEeCCCeEEEEECCC-EEEEECCCC
Confidence 356789996 55677777889999999876 2222222 34679999999999944445544 889998653
Q ss_pred ce-eeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecC
Q 043350 294 EK-SLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIE 372 (1133)
Q Consensus 294 ~~-~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h 372 (1133)
.. .+...+.... ...++.+...+.+. +.++..+.. .....+.|..+| +++.. .+...
T Consensus 120 ~~~~~~~~~~~~~---------------~~~~~~i~~d~~G~--l~v~~~~~~--~~~~~~~l~~~~--~g~~~-~~~~~ 177 (326)
T 2ghs_A 120 VLTLHAELESDLP---------------GNRSNDGRMHPSGA--LWIGTMGRK--AETGAGSIYHVA--KGKVT-KLFAD 177 (326)
T ss_dssp CEEEEECSSTTCT---------------TEEEEEEEECTTSC--EEEEEEETT--CCTTCEEEEEEE--TTEEE-EEEEE
T ss_pred cEEEEeeCCCCCC---------------CCCCCCEEECCCCC--EEEEeCCCc--CCCCceEEEEEe--CCcEE-EeeCC
Confidence 22 1111111000 00011111112222 111110000 000113344444 44433 23222
Q ss_pred CcceeEEEeCCCCCccccccceEEE-EeeCCCCcccccccc--ccceeeccCCceEEEEEecCCcccCCCCCEEEEEECC
Q 043350 373 GHIENRVDTQSVQDQPVEDEMKVKF-VSSNKKEKPHGFLQR--SRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTA 449 (1133)
Q Consensus 373 ~~~v~~l~~sp~g~~~~e~e~~v~l-asgs~Dg~i~~~~~~--~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~sp 449 (1133)
....+.++|+|+++. + ++.+.++.|..++.. ....+ .....+ .. +.........+++++
T Consensus 178 ~~~~~~i~~s~dg~~---------lyv~~~~~~~I~~~d~~~~~Gl~~----~~~~~~-~~----~~~~~~~p~gi~~d~ 239 (326)
T 2ghs_A 178 ISIPNSICFSPDGTT---------GYFVDTKVNRLMRVPLDARTGLPT----GKAEVF-ID----STGIKGGMDGSVCDA 239 (326)
T ss_dssp ESSEEEEEECTTSCE---------EEEEETTTCEEEEEEBCTTTCCBS----SCCEEE-EE----CTTSSSEEEEEEECT
T ss_pred CcccCCeEEcCCCCE---------EEEEECCCCEEEEEEcccccCCcc----cCceEE-EE----CCCCCCCCCeeEECC
Confidence 234678999999975 4 444555666533211 00000 000011 11 112233456788999
Q ss_pred CCeEEEE-ecCCeEEEEeCCCCeeEEEecCCcceeE--Ee-cCCCEEEEEecC
Q 043350 450 DGMIWSG-CTNGLLVQWDGNGNRVSDILHHQCAVQC--FC-TYGSRMYVGYVS 498 (1133)
Q Consensus 450 dg~L~sg-s~DG~I~vWd~~g~~l~~~~~h~~~V~~--fs-~dg~~Lasgs~D 498 (1133)
+|.|+.+ ..++.|.+|+.+++.+..+..+...+++ |+ ++++.|++++..
T Consensus 240 ~G~lwva~~~~~~v~~~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 240 EGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp TSCEEEEEETTTEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred CCCEEEEEeCCCEEEEECCCCCEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 9944444 4568999999988888888777666776 77 788877766644
No 243
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.25 E-value=1.8e-05 Score=88.29 Aligned_cols=213 Identities=13% Similarity=0.101 Sum_probs=128.6
Q ss_pred cccCCCCC-EEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEEe--cCCcEEEeeCCC
Q 043350 109 KPFQPMVE-FIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWAG--QECGVRFWNLED 184 (1133)
Q Consensus 109 ~~~~p~g~-~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~llas--~Dg~VrvWdl~~ 184 (1133)
+.++|+|+ ++.++..++.|..|+.. +. ...+..+.. .+..++ .++|+++++ .++.|.+|+.++
T Consensus 50 p~~~~~g~~l~~~d~~~~~i~~~~~~----g~--~~~~~~~~~-------~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g 116 (305)
T 3dr2_A 50 PAWWEAQRTLVWSDLVGRRVLGWRED----GT--VDVLLDATA-------FTNGNAVDAQQRLVHCEHGRRAITRSDADG 116 (305)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEETT----SC--EEEEEESCS-------CEEEEEECTTSCEEEEETTTTEEEEECTTS
T ss_pred CeEeCCCCEEEEEECCCCEEEEEeCC----CC--EEEEeCCCC-------ccceeeECCCCCEEEEECCCCEEEEECCCC
Confidence 55688998 67788888999999765 43 334444444 678888 889999883 346899998764
Q ss_pred CCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEE----EeC-------------CCeEEEEeCCCCCCC
Q 043350 185 SYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWT----GHK-------------DGKIRSWKMDQTLDD 247 (1133)
Q Consensus 185 ~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaS----gs~-------------Dg~V~vWd~~~~~~~ 247 (1133)
....+..+ ........+.+++++++|++.+| |.. .+.|..|+...
T Consensus 117 ~~~~~~~~--------------~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~---- 178 (305)
T 3dr2_A 117 QAHLLVGR--------------YAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG---- 178 (305)
T ss_dssp CEEEEECE--------------ETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS----
T ss_pred CEEEEEec--------------cCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC----
Confidence 32221100 00011234678999999998886 432 24566666543
Q ss_pred CCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCC------CcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccC
Q 043350 248 ANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEG------GVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRA 320 (1133)
Q Consensus 248 ~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~D------gtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~ 320 (1133)
..+..+. +....+.++|+|+|+ |+.+... +.|.+|++.... +.. ... .....
T Consensus 179 -----g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~---~~~---------~~~~~- 237 (305)
T 3dr2_A 179 -----SPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA--LHD---RRH---------FASVP- 237 (305)
T ss_dssp -----CCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE--EEE---EEE---------EECCS-
T ss_pred -----CcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC--ccC---CeE---------EEECC-
Confidence 1111222 445678999999999 7776655 688888875421 000 000 10000
Q ss_pred ceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCc
Q 043350 321 QVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQ 387 (1133)
Q Consensus 321 ~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~ 387 (1133)
...++.+ ....++. +|.+..+.|.+||. +++.+..+.... .+..++|++++..
T Consensus 238 ---------~~~pdgi-~~d~~G~--lwv~~~~gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~ 290 (305)
T 3dr2_A 238 ---------DGLPDGF-CVDRGGW--LWSSSGTGVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQR 290 (305)
T ss_dssp ---------SSCCCSE-EECTTSC--EEECCSSEEEEECT-TSCEEEEEECSS-CCCEEEECTTSCE
T ss_pred ---------CCCCCeE-EECCCCC--EEEecCCcEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCE
Confidence 0112222 2223333 56555667889997 688888777655 5788999988876
No 244
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.25 E-value=8.8e-06 Score=93.67 Aligned_cols=176 Identities=14% Similarity=0.079 Sum_probs=110.7
Q ss_pred eEEEEE-eCCCCeEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCe
Q 043350 158 FLRNIA-CTDTQLWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGK 235 (1133)
Q Consensus 158 ~V~~v~-s~dg~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~ 235 (1133)
.+..++ ++...+++ +.-..+++|+++.......... ++ ..+.....+.+ |+.|+| ++.+|+++ .++.
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~-----~~--~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~ 107 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDS-----TP--LTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNA 107 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSS-----CC--CCCSEEEECTT-EEEEEE--ETTEEEEE-ESSE
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhcccc-----cc--ccceEEeeCCC-eeEEEE--CCCEEEEE-cCCc
Confidence 355666 66666666 5556788899876321110000 00 11212223455 999999 89999999 8899
Q ss_pred EEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceE
Q 043350 236 IRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSF 315 (1133)
Q Consensus 236 V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~ 315 (1133)
|++||+... ........|..+|.++.+.+. +++.++.||+|.+||+...... ... .
T Consensus 108 l~v~dv~sl--------~~~~~~~~~~~~v~~i~~~~p-~~av~~~dG~L~v~dl~~~~~~-~~~-~------------- 163 (388)
T 1xip_A 108 LYSLDLEEL--------SEFRTVTSFEKPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTK-QLA-Q------------- 163 (388)
T ss_dssp EEEEESSST--------TCEEEEEECSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEE-EEE-E-------------
T ss_pred EEEEEchhh--------hccCccceeecceeeEEecCC-CEEEEECCCCEEEEEccCCccc-ccc-C-------------
Confidence 999999861 223345677788988877643 3999999999999999753211 000 0
Q ss_pred EEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCce--eEEE------e---cCCcceeEEEeCCC
Q 043350 316 IDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKEL--LKVF------N---IEGHIENRVDTQSV 384 (1133)
Q Consensus 316 ~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~--l~~~------~---~h~~~v~~l~~sp~ 384 (1133)
.+..+++.+.+ .+++ ..|+.+++|+...++. .+++ . +|...|.++.|.++
T Consensus 164 -------~Vs~v~WSpkG--~~vg----------~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~ 224 (388)
T 1xip_A 164 -------NVTSFDVTNSQ--LAVL----------LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSP 224 (388)
T ss_dssp -------SEEEEEECSSE--EEEE----------ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSS
T ss_pred -------CceEEEEcCCc--eEEE----------EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecC
Confidence 11222222333 3333 5578888887777665 5566 2 35677999999998
Q ss_pred CCc
Q 043350 385 QDQ 387 (1133)
Q Consensus 385 g~~ 387 (1133)
+.+
T Consensus 225 ~~f 227 (388)
T 1xip_A 225 QDF 227 (388)
T ss_dssp SEE
T ss_pred CeE
Confidence 877
No 245
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.25 E-value=0.00033 Score=77.60 Aligned_cols=215 Identities=9% Similarity=0.058 Sum_probs=122.9
Q ss_pred CCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEe
Q 043350 263 GPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLS 340 (1133)
Q Consensus 263 ~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S 340 (1133)
.---+..|++++. +++...++.|..||..+........+... . .+...
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~--------------------~----------~i~~~ 62 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPV--------------------S----------SVALR 62 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCE--------------------E----------EEEEB
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCce--------------------E----------EEEEC
Confidence 3445789999654 77777889999999876422111111110 0 11112
Q ss_pred cCCceEEEecCCCceeEeecCCCceeEEEecC----CcceeEEEeCCCCCccccccceEEEEeeCCCCccc-ccccc--c
Q 043350 341 DHARARVWCAQPLSFSLWDARSKELLKVFNIE----GHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPH-GFLQR--S 413 (1133)
Q Consensus 341 ~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h----~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~-~~~~~--~ 413 (1133)
.++. +|.+.+..|.+||..+++........ ...++.++++|++.+ +++........ ..... .
T Consensus 63 ~dG~--l~v~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l---------~~~~~~~~~~~~~~~~~~~~ 131 (297)
T 3g4e_A 63 QSGG--YVATIGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRY---------FAGTMAEETAPAVLERHQGA 131 (297)
T ss_dssp TTSS--EEEEETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCE---------EEEEEECCSBTTBCCTTCEE
T ss_pred CCCC--EEEEECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCE---------EEecCCcccccccccCCCcE
Confidence 2333 23233567888888877654333221 234778999999987 55443222110 00000 0
Q ss_pred cceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eE-EEEecCCeEEEEeC---CCCe-----eEEEecCCccee
Q 043350 414 RNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MI-WSGCTNGLLVQWDG---NGNR-----VSDILHHQCAVQ 483 (1133)
Q Consensus 414 ~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L-~sgs~DG~I~vWd~---~g~~-----l~~~~~h~~~V~ 483 (1133)
+..+.. ...+..+. ........++++|++ .| ++.+.++.|.+|+. +|.. +..+..+.....
T Consensus 132 l~~~d~-~g~~~~~~--------~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~ 202 (297)
T 3g4e_A 132 LYSLFP-DHHVKKYF--------DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPD 202 (297)
T ss_dssp EEEECT-TSCEEEEE--------EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEE
T ss_pred EEEEEC-CCCEEEEe--------eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCC
Confidence 000100 11111111 112345788999999 55 55666899999986 3332 122222223344
Q ss_pred E--EecCCCEEEEEecCCeEEEEeCC-CCcceeeeccccCeEEeeec
Q 043350 484 C--FCTYGSRMYVGYVSGYLQILDLD-GNLTASWIAHSSPVLKLAVG 527 (1133)
Q Consensus 484 ~--fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~H~~~V~~l~fs 527 (1133)
. ++++|.+.++....+.|.+||.+ |+++..+..+...+++++|.
T Consensus 203 g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~ 249 (297)
T 3g4e_A 203 GMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFG 249 (297)
T ss_dssp EEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEE
T ss_pred eeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEe
Confidence 4 78889766666678899999997 88888888887889999997
No 246
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=98.23 E-value=7e-07 Score=100.74 Aligned_cols=132 Identities=15% Similarity=0.169 Sum_probs=63.1
Q ss_pred ccceEEEEEEcCCCCCCch-hhhhhhcCCCCCccEEEEeeeecccccchhhhhhhhhhhcCCCCcchhhHHHHHhhhcCC
Q 043350 571 DVRILVGTWNVGQGRASHE-SLLSWLGSVSSDVGIVAVGLQEVEMGAGFLAMSAAKETVGLEGSAIGQWWQDTIGKALDE 649 (1133)
Q Consensus 571 ~lrI~v~TWNv~~~~~~~~-~l~~wl~~~~~~~di~vig~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~ 649 (1133)
...+.+.|||+.+...... .+..||.. .+||| |+|||+...... ....|.. + .
T Consensus 59 ~~~lrv~t~Nv~g~~~~~~~~i~~~i~~--~~~DI--i~LQE~~~~~~~--------------------~~~~l~~-~-~ 112 (318)
T 1hd7_A 59 PATLKICSWNVDGLRAWIKKKGLDWVKE--EAPDI--LCLQETKCSENK--------------------LPAELQE-L-P 112 (318)
T ss_dssp BCCEEEEEEECSSHHHHHHTTHHHHHHH--HCCSE--EEEECCCCCC---------------------------------
T ss_pred CCceEEEEEecCcchhhhhhhHHHHHHh--hCCCE--EEEEEccCchhh--------------------ccHHHHh-c-C
Confidence 3457889999986432222 36777753 45776 689998643210 0011111 1 2
Q ss_pred CCcEEEEee-e-ecceEEEEEEEecccccccCceeecccccccccccccceeEEEEEEEcCeEEEEEecccccChHH---
Q 043350 650 GTTFERMGS-R-QLAGLLISFWVRKNLRTHVGDVDAAAVPCGFGRAIGNKGGVGLRIRVYDRTICFVNCHLAAHLEA--- 724 (1133)
Q Consensus 650 ~~~y~~v~~-~-~l~g~~l~v~~~~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~~r~~~~~~~~~fvn~Hlaa~~~~--- 724 (1133)
++.|..... . +-+.-.+++|.|..+.. +.. +.+.. .....|.+ +...+ ..|.++|+||......
T Consensus 113 gy~~~~~~~~~~~~g~~Gvailsr~~~~~----~~~---~~~~~-~~~~~~r~-l~~~~--~~~~v~~vh~p~~~~~~~~ 181 (318)
T 1hd7_A 113 GLSHQYWSAPSDKEGYSGVGLLSRQCPLK----VSY---GIGDE-EHDQEGRV-IVAEF--DSFVLVTAYVPNAGRGLVR 181 (318)
T ss_dssp CCCEEEEECC-----CCCEEEEESSCCSE----EEE---SCSCG-GGSSSSCE-EEEEC--SSCEEEEEECCCCCGGGTT
T ss_pred CCceEEEecCCCCCccceEEEEEcCCcee----EEe---cCCCc-ccCCCCcE-EEEEc--CCEEEEEEEcCCCCCcccc
Confidence 443322222 1 22201245677776432 211 11110 12233432 33333 4799999999776542
Q ss_pred HHHHHHHHHHHHHhC
Q 043350 725 VNRRNADYDHIYRNM 739 (1133)
Q Consensus 725 ~~~Rn~d~~~i~~~~ 739 (1133)
.+.|.+.+..|.+.+
T Consensus 182 ~~~r~~~~~~l~~~l 196 (318)
T 1hd7_A 182 LEYRQRWDEAFRKFL 196 (318)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666666665543
No 247
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.22 E-value=5.6e-05 Score=85.26 Aligned_cols=218 Identities=10% Similarity=-0.010 Sum_probs=124.8
Q ss_pred cccCCC-CCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEEecCCcEEEeeCCCCC
Q 043350 109 KPFQPM-VEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWAGQECGVRFWNLEDSY 186 (1133)
Q Consensus 109 ~~~~p~-g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~llas~Dg~VrvWdl~~~~ 186 (1133)
+.++|+ +.++.++..++.|..|+.. +.. ...+. ++. .+.+++ .++|.+|++.+..|.+||..+..
T Consensus 54 p~~~~~~~~l~~~d~~~~~i~~~d~~----~~~-~~~~~-~~~-------~v~~i~~~~dg~l~v~~~~gl~~~d~~~g~ 120 (326)
T 2ghs_A 54 PTFDPASGTAWWFNILERELHELHLA----SGR-KTVHA-LPF-------MGSALAKISDSKQLIASDDGLFLRDTATGV 120 (326)
T ss_dssp EEEETTTTEEEEEEGGGTEEEEEETT----TTE-EEEEE-CSS-------CEEEEEEEETTEEEEEETTEEEEEETTTCC
T ss_pred CeEeCCCCEEEEEECCCCEEEEEECC----CCc-EEEEE-CCC-------cceEEEEeCCCeEEEEECCCEEEEECCCCc
Confidence 445776 4566777778899999876 322 22222 233 688888 88999999545669999986521
Q ss_pred -CcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeC------CCeEEEEeCCCCCCCCCCCcccccccc
Q 043350 187 -EPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHK------DGKIRSWKMDQTLDDANNPFKEGLSWQ 259 (1133)
Q Consensus 187 -~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~------Dg~V~vWd~~~~~~~~~~~~~~~~~l~ 259 (1133)
..+.... .......+.+++++|+|++.++... .+.|..++ .+ + ...+.
T Consensus 121 ~~~~~~~~--------------~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g---------~-~~~~~ 175 (326)
T 2ghs_A 121 LTLHAELE--------------SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KG---------K-VTKLF 175 (326)
T ss_dssp EEEEECSS--------------TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TT---------E-EEEEE
T ss_pred EEEEeeCC--------------CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CC---------c-EEEee
Confidence 1110000 0011235789999999987665442 23444445 22 1 22222
Q ss_pred cCCCCeEEEEEeeCCc-E-EEEeCCCcEEEEeCC--CCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCe
Q 043350 260 AHRGPVLAMIFSSQGD-L-WSGGEGGVIKIWPWE--SIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEI 335 (1133)
Q Consensus 260 gH~~~V~sl~fsp~g~-L-~Sgs~DgtI~iWdl~--~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~ 335 (1133)
.+....++++|+|+|+ | ++.+.++.|.+|+++ ++.. +. .... +..+.... ..++
T Consensus 176 ~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~---~~--~~~~--------~~~~~~~~--------~~p~- 233 (326)
T 2ghs_A 176 ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLP---TG--KAEV--------FIDSTGIK--------GGMD- 233 (326)
T ss_dssp EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCB---SS--CCEE--------EEECTTSS--------SEEE-
T ss_pred CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCc---cc--CceE--------EEECCCCC--------CCCC-
Confidence 3344578999999998 5 455567899999975 2200 00 0000 11110000 0011
Q ss_pred EEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeC-CCCCc
Q 043350 336 KCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQ-SVQDQ 387 (1133)
Q Consensus 336 ~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~s-p~g~~ 387 (1133)
-+....++.+.+-...++.|..||. +++.+..+..+...+++++|+ +++..
T Consensus 234 gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~ 285 (326)
T 2ghs_A 234 GSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASR 285 (326)
T ss_dssp EEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCE
T ss_pred eeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCE
Confidence 1122223332222234678999998 788888888777779999998 78765
No 248
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.22 E-value=0.00029 Score=80.76 Aligned_cols=312 Identities=11% Similarity=0.095 Sum_probs=160.5
Q ss_pred CCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCcc--ccccceEEE-EEeCCCCeEE-ecCCcEEEeeCCCCCCcC
Q 043350 114 MVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKE--TQAGRFLRN-IACTDTQLWA-GQECGVRFWNLEDSYEPG 189 (1133)
Q Consensus 114 ~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~--~~~g~~V~~-v~s~dg~lla-s~Dg~VrvWdl~~~~~~~ 189 (1133)
.+..|..++.++.+..+|..+ |+. +-......... ......+.+ +...++.+++ +.++.|..+|..+....+
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~t---G~~-~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W 127 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADD---GKE-IWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAW 127 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTT---CCE-EEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCeEEEEEccC---Cce-eeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEE
Confidence 466788888889999999864 554 43333221100 000112322 3355777777 788999999987643222
Q ss_pred cCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCe----
Q 043350 190 AGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPV---- 265 (1133)
Q Consensus 190 ~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V---- 265 (1133)
.... + ......++ . .+..++.++.++.|..+|..++. .+...... .++
T Consensus 128 ~~~~-----~--------~~~~~~p~----~--~~~~v~v~~~~g~l~~~d~~tG~--------~~W~~~~~-~~~~~~~ 179 (376)
T 3q7m_A 128 QTKV-----A--------GEALSRPV----V--SDGLVLIHTSNGQLQALNEADGA--------VKWTVNLD-MPSLSLR 179 (376)
T ss_dssp EEEC-----S--------SCCCSCCE----E--ETTEEEEECTTSEEEEEETTTCC--------EEEEEECC-C-----C
T ss_pred EEeC-----C--------CceEcCCE----E--ECCEEEEEcCCCeEEEEECCCCc--------EEEEEeCC-CCceeec
Confidence 1000 0 00111221 1 24578888999999999987522 11111111 111
Q ss_pred --EEEEEeeCCcEEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCC
Q 043350 266 --LAMIFSSQGDLWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHA 343 (1133)
Q Consensus 266 --~sl~fsp~g~L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~ 343 (1133)
...... ++.++.++.++.|..+|..++............ . ...+. .+......+ +. .++
T Consensus 180 ~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~---~-----~~~~~---~~~~~~~~p------~~-~~~ 240 (376)
T 3q7m_A 180 GESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQAT---G-----STEID---RLSDVDTTP------VV-VNG 240 (376)
T ss_dssp CCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC----------------------CCCCCC------EE-ETT
T ss_pred CCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCC---C-----Ccccc---cccccCCCc------EE-ECC
Confidence 111222 344888888999999998764333222111000 0 00000 000000000 00 011
Q ss_pred ceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCc
Q 043350 344 RARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADA 423 (1133)
Q Consensus 344 ~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~ 423 (1133)
.+.+ .+.++.+..+|..+|+.+....... ...+.. ++.. +..++.++.+..++......
T Consensus 241 ~v~~-~~~~g~l~~~d~~tG~~~w~~~~~~--~~~~~~--~~~~---------l~~~~~~g~l~~~d~~tG~~------- 299 (376)
T 3q7m_A 241 VVFA-LAYNGNLTALDLRSGQIMWKRELGS--VNDFIV--DGNR---------IYLVDQNDRVMALTIDGGVT------- 299 (376)
T ss_dssp EEEE-ECTTSCEEEEETTTCCEEEEECCCC--EEEEEE--ETTE---------EEEEETTCCEEEEETTTCCE-------
T ss_pred EEEE-EecCcEEEEEECCCCcEEeeccCCC--CCCceE--ECCE---------EEEEcCCCeEEEEECCCCcE-------
Confidence 1111 1346788888988888876654322 223332 2334 66667777775333221111
Q ss_pred eEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeC-CCCeeEEEecCCcceeE-EecCCCEEEEEecCCeE
Q 043350 424 VRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQC-FCTYGSRMYVGYVSGYL 501 (1133)
Q Consensus 424 V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~-fs~dg~~Lasgs~DG~I 501 (1133)
++..... ....+..... .++.|+.++.+|.|.++|. +|+.+..+......+.+ ....+..|++++.+|.|
T Consensus 300 ~w~~~~~-------~~~~~~~~~~-~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l 371 (376)
T 3q7m_A 300 LWTQSDL-------LHRLLTSPVL-YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTV 371 (376)
T ss_dssp EEEECTT-------TTSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCE
T ss_pred EEeeccc-------CCCcccCCEE-ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEE
Confidence 1111000 0000111111 2458899999999999998 78888877764444544 33346688999999999
Q ss_pred EEEe
Q 043350 502 QILD 505 (1133)
Q Consensus 502 ~vwd 505 (1133)
+.|+
T Consensus 372 ~~~~ 375 (376)
T 3q7m_A 372 YSIT 375 (376)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9987
No 249
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.21 E-value=0.0055 Score=77.63 Aligned_cols=347 Identities=12% Similarity=0.100 Sum_probs=187.0
Q ss_pred eEEEEE-eCCCCeEEecC-CcEEEeeCCCCCCcCcCCC--ccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCC
Q 043350 158 FLRNIA-CTDTQLWAGQE-CGVRFWNLEDSYEPGAGIG--GRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKD 233 (1133)
Q Consensus 158 ~V~~v~-s~dg~llas~D-g~VrvWdl~~~~~~~~gh~--~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~D 233 (1133)
.|.++. ..+|.+|++.+ +.|.+++..+..-....+. ..+.. . ..........|.++..+++|. |+.|+.+
T Consensus 259 ~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~--~---~~~~~l~~~~v~~i~~D~~g~-lWigt~~ 332 (781)
T 3v9f_A 259 YIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIRE--G---DNNYSLSNASARYIFQDSFNN-IWIGTWG 332 (781)
T ss_dssp CEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECB--C---SSTTSBSSSCEEEEEECSSCC-EEEEEBS
T ss_pred eEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccC--C---CCCCCCCCCeEEEEEEeCCCC-EEEEecC
Confidence 688888 78999999554 8899999876211100000 00000 0 000123345799999998775 6888877
Q ss_pred CeEEEEeCCCCCCCCCCCcccccc-------cccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCCCCc-e----------
Q 043350 234 GKIRSWKMDQTLDDANNPFKEGLS-------WQAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWESIE-K---------- 295 (1133)
Q Consensus 234 g~V~vWd~~~~~~~~~~~~~~~~~-------l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~~~~-~---------- 295 (1133)
+-|..++..... +..... -.-....|.+++..++|.|+.|+.++-|..|+..+.. .
T Consensus 333 ~Gl~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~ 406 (781)
T 3v9f_A 333 GGINFISNAPPT------FHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLS 406 (781)
T ss_dssp SCEEEECSSCCS------CEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCC
T ss_pred CeEEEeCCCCCc------ceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCC
Confidence 888889876411 111110 0012457999998888889999877778888876421 1
Q ss_pred ----eeEeCCCCceEEEEeecceEEEccCc-eeeecccc-CCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEE
Q 043350 296 ----SLSLKPEEKHMAALLVERSFIDLRAQ-VTVNGACS-ISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVF 369 (1133)
Q Consensus 296 ----~l~~~~~~~~l~s~~~d~s~~d~~~~-~~v~~~~~-~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~ 369 (1133)
.+....++. +-.++....+..+... ..+..+.. .........+..|..-.+|-+..+.+..||..+++.....
T Consensus 407 ~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~ 485 (781)
T 3v9f_A 407 NSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTHAGVFVIDLASKKVIHHY 485 (781)
T ss_dssp SBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEETTEEEEEESSSSSCCEEE
T ss_pred cceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEECCceEEEeCCCCeEEecc
Confidence 111111111 1111111111112111 11111110 0112233334445556788777788999998887765443
Q ss_pred ecC-----CcceeEEEeCCCCCccccccceEEEEeeCC-CCccccccccccceeeccCCceEEEEEecCCcccCCCCCEE
Q 043350 370 NIE-----GHIENRVDTQSVQDQPVEDEMKVKFVSSNK-KEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTE 443 (1133)
Q Consensus 370 ~~h-----~~~v~~l~~sp~g~~~~e~e~~v~lasgs~-Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~ 443 (1133)
... ...|.++...+++.+ . .|+. .|.. .++... ..+.. +.... .-....|.
T Consensus 486 ~~~~~~~~~~~i~~i~~d~~g~l---------W-igt~~~Gl~-~~~~~~--------~~~~~--~~~~~--~l~~~~i~ 542 (781)
T 3v9f_A 486 DTSNSQLLENFVRSIAQDSEGRF---------W-IGTFGGGVG-IYTPDM--------QLVRK--FNQYE--GFCSNTIN 542 (781)
T ss_dssp CTTTSSCSCSCEEEEEECTTCCE---------E-EEESSSCEE-EECTTC--------CEEEE--ECTTT--TCSCSCEE
T ss_pred cCcccccccceeEEEEEcCCCCE---------E-EEEcCCCEE-EEeCCC--------CeEEE--ccCCC--CCCCCeeE
Confidence 322 346788888887765 4 4444 4433 222111 11111 11100 11245688
Q ss_pred EEEECCCCeEEEEecCCeEEEEeCCCCeeEEEec----CCcceeEEec--CCCEEEEEecCCeEEEEeCCCCcceeeecc
Q 043350 444 AMVLTADGMIWSGCTNGLLVQWDGNGNRVSDILH----HQCAVQCFCT--YGSRMYVGYVSGYLQILDLDGNLTASWIAH 517 (1133)
Q Consensus 444 sl~~spdg~L~sgs~DG~I~vWd~~g~~l~~~~~----h~~~V~~fs~--dg~~Lasgs~DG~I~vwd~~g~~l~~~~~H 517 (1133)
++...++|.|+.|+.+|.|..||..+..+..+.. ....|.++.. +| .|+.++.+| |..|+.+...+..+...
T Consensus 543 ~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g-~lW~~t~~G-l~~~~~~~~~~~~~~~~ 620 (781)
T 3v9f_A 543 QIYRSSKGQMWLATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNG-NIWASTNTG-ISCYITSKKCFYTYDHS 620 (781)
T ss_dssp EEEECTTSCEEEEETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSS-CEEEECSSC-EEEEETTTTEEEEECGG
T ss_pred EEEECCCCCEEEEECCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCC-CEEEEcCCc-eEEEECCCCceEEeccc
Confidence 9989899978888777766889986655555543 2234666443 44 467777666 77788776554444432
Q ss_pred cc------CeEEeeec-ccceeeecccCCeee
Q 043350 518 SS------PVLKLAVG-VDHIYSLAAHGGIRG 542 (1133)
Q Consensus 518 ~~------~V~~l~fs-~~~L~S~s~Dg~I~l 542 (1133)
.+ ...++... ...|+-++.+|.+++
T Consensus 621 dGl~~~~f~~~~~~~~~~G~l~~g~~~Gl~~f 652 (781)
T 3v9f_A 621 NNIPQGSFISGCVTKDHNGLIYFGSINGLCFF 652 (781)
T ss_dssp GTCCSSCEEEEEEEECTTSCEEEEETTEEEEE
T ss_pred CCccccccccCceEECCCCEEEEECCCceEEE
Confidence 22 12344444 566777777875443
No 250
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.20 E-value=0.0024 Score=80.92 Aligned_cols=335 Identities=12% Similarity=0.131 Sum_probs=169.1
Q ss_pred eEEEEE-eCCCCeEEecCCcEEEeeCCCC-CCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCe
Q 043350 158 FLRNIA-CTDTQLWAGQECGVRFWNLEDS-YEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGK 235 (1133)
Q Consensus 158 ~V~~v~-s~dg~llas~Dg~VrvWdl~~~-~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~ 235 (1133)
.|.+|. ..+|.+|++.++.+.+||..+. ..... +. . ..........|.++..++++. |+.|+..+-
T Consensus 212 ~i~~i~~d~~g~lwigt~~Gl~~~d~~~~~~~~~~-~~------~----~~~~~l~~~~i~~i~~d~~g~-lWigt~~~G 279 (781)
T 3v9f_A 212 DVRCIYKDTNGNIWIGTSKGLALFNANTETFTNFH-NN------P----GNIHGALSSYIFSIKQLKDNK-LWIATELNG 279 (781)
T ss_dssp SEEEEEECTTCCEEEEETTEEEEEETTTTEEEC----------------------CCCCEEEEEECTTSE-EEEEESSSC
T ss_pred ceeEEEEcCCCCEEEEeCCcHheECCCCCcEEEEE-cC------C----CccccccCceEEEEEECCCCC-EEEEeCCCC
Confidence 688888 7889999955558999997652 11110 00 0 000112345699999887765 567777566
Q ss_pred EEEEeCCCCCCCCCCCcccccc------------cccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCCCC-ceeeEeCCC
Q 043350 236 IRSWKMDQTLDDANNPFKEGLS------------WQAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWESI-EKSLSLKPE 302 (1133)
Q Consensus 236 V~vWd~~~~~~~~~~~~~~~~~------------l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~~~-~~~l~~~~~ 302 (1133)
|.+++...... ..... -.-....|.+|...++|.|+.|+.++-|..++.... ...+...+.
T Consensus 280 l~~~~~~~~~~------~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~ 353 (781)
T 3v9f_A 280 IMILDLQQNQF------LLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPT 353 (781)
T ss_dssp EEEEETTCC---------------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----
T ss_pred eEEECCCCCee------eeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCcc
Confidence 88888765211 11000 012356799999988888999998888888887642 111111100
Q ss_pred CceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecC-CCceeEeecCCCceeEEE---ecCCcceeE
Q 043350 303 EKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQ-PLSFSLWDARSKELLKVF---NIEGHIENR 378 (1133)
Q Consensus 303 ~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~-d~~I~lWD~~tg~~l~~~---~~h~~~v~~ 378 (1133)
... ... ........+..|..-.+|-+. ++.|..||..++...... ......|.+
T Consensus 354 ~~~---------------------~~~-l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~ 411 (781)
T 3v9f_A 354 QMN---------------------ESS-LSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLC 411 (781)
T ss_dssp CCC---------------------SSC-CSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEE
T ss_pred ccc---------------------cCC-CCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEE
Confidence 000 000 011122222333444566655 567888887655432111 123345778
Q ss_pred EEeCCCCCccccccceEEEEeeCCCCcccccccc--ccceee---ccCCceEEEEEecCCc------------------c
Q 043350 379 VDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQR--SRNAIM---GAADAVRRVATRGAGA------------------F 435 (1133)
Q Consensus 379 l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~--~~~~~~---~~~~~V~~v~~~p~g~------------------~ 435 (1133)
+...+++.+ ..|+.++-+..++.. ....+. .....|.++...+++. +
T Consensus 412 i~~d~~g~l----------Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~ 481 (781)
T 3v9f_A 412 SLKDSEGNL----------WFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTHAGVFVIDLASKKV 481 (781)
T ss_dssp EEECTTSCE----------EEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEETTEEEEEESSSSSC
T ss_pred EEECCCCCE----------EEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEECCceEEEeCCCCeE
Confidence 877777654 334433222211110 000000 0011222222221111 1
Q ss_pred ---c-C-----CCCCEEEEEECCCCeEEEEecCCeEEEEeCCCCeeEEEec----CCcceeEEec--CCCEEEEEecCCe
Q 043350 436 ---V-D-----DTKRTEAMVLTADGMIWSGCTNGLLVQWDGNGNRVSDILH----HQCAVQCFCT--YGSRMYVGYVSGY 500 (1133)
Q Consensus 436 ---~-~-----h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~g~~l~~~~~----h~~~V~~fs~--dg~~Lasgs~DG~ 500 (1133)
. . ....|.++...++|.|+.|+.++-|..|+..+..+..+.. ....|.++.. +| .|+.|+.+|.
T Consensus 482 ~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-~lWi~T~~Gl 560 (781)
T 3v9f_A 482 IHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKG-QMWLATGEGL 560 (781)
T ss_dssp CEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTS-CEEEEETTEE
T ss_pred EecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCC-CEEEEECCCc
Confidence 0 0 1245777877777777777764446677776555555432 2345666433 34 3566666665
Q ss_pred EEEEeCCCCcceeeecc----ccCeEEeeec-ccceeeecccCCeeecc
Q 043350 501 LQILDLDGNLTASWIAH----SSPVLKLAVG-VDHIYSLAAHGGIRGWT 544 (1133)
Q Consensus 501 I~vwd~~g~~l~~~~~H----~~~V~~l~fs-~~~L~S~s~Dg~I~lW~ 544 (1133)
|..||..+..+..+... ...|.++..+ ...|..++.+| |..++
T Consensus 561 v~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~~G-l~~~~ 608 (781)
T 3v9f_A 561 VCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWASTNTG-ISCYI 608 (781)
T ss_dssp EEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEECSSC-EEEEE
T ss_pred eEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEcCCc-eEEEE
Confidence 57777765444333322 2346666666 44555555444 44454
No 251
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.19 E-value=0.00022 Score=83.26 Aligned_cols=231 Identities=6% Similarity=-0.053 Sum_probs=132.2
Q ss_pred CCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCC-ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEe
Q 043350 263 GPVLAMIFSSQGD-LWSGGEGGVIKIWPWESI-EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLS 340 (1133)
Q Consensus 263 ~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~-~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S 340 (1133)
.....|+|+++|+ +++...++.|++||..+. ...+..... .+. +..+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-----------------------------~~~--ia~~ 179 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-----------------------------GGK--PAVT 179 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-----------------------------BCB--CEEC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-----------------------------CCc--eeEe
Confidence 4578999999999 777777899999999753 221111100 000 1112
Q ss_pred cCCceEEEecCCC--ceeEeecCCCceeEEE----ecCCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccccccc
Q 043350 341 DHARARVWCAQPL--SFSLWDARSKELLKVF----NIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSR 414 (1133)
Q Consensus 341 ~d~~i~vwss~d~--~I~lWD~~tg~~l~~~----~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~ 414 (1133)
.++...+|...++ .|.+||...+.....+ ........+++++|+... |..+..++.|+.++....
T Consensus 180 ~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~---------lyv~d~~~~I~~~d~~~~ 250 (409)
T 3hrp_A 180 KDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW---------LYFVDSNKNFGRFNVKTQ 250 (409)
T ss_dssp TTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE---------EEEECTTCEEEEEETTTC
T ss_pred cCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe---------EEEEECCCcEEEEECCCC
Confidence 2222222222322 6777887766554444 224455778999994444 444566676653332211
Q ss_pred ceeeccCCceEEEEEecCCcccCCCCC--EEEEEECCC-C-eEEEEecCCeEEEEeCCCCeeEEEecCC-----------
Q 043350 415 NAIMGAADAVRRVATRGAGAFVDDTKR--TEAMVLTAD-G-MIWSGCTNGLLVQWDGNGNRVSDILHHQ----------- 479 (1133)
Q Consensus 415 ~~~~~~~~~V~~v~~~p~g~~~~h~~~--V~sl~~spd-g-~L~sgs~DG~I~vWd~~g~~l~~~~~h~----------- 479 (1133)
.+..++.. + ..+.... ...++++|+ + ++++-..++.|+.|+.++. +..+.++.
T Consensus 251 --------~~~~~~~~--~-~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~ 318 (409)
T 3hrp_A 251 --------EVTLIKQL--E-LSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLRE 318 (409)
T ss_dssp --------CEEEEEEC--C-CCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGG
T ss_pred --------CEEEEecc--c-ccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCccc
Confidence 11111110 0 0111111 128889995 6 5666667899999999886 33333322
Q ss_pred ----cceeE--EecCCCEEEEEe-cCCeEEEEeCCCCcceeeecc---------------ccCeEEeeec--ccceeeec
Q 043350 480 ----CAVQC--FCTYGSRMYVGY-VSGYLQILDLDGNLTASWIAH---------------SSPVLKLAVG--VDHIYSLA 535 (1133)
Q Consensus 480 ----~~V~~--fs~dg~~Lasgs-~DG~I~vwd~~g~~l~~~~~H---------------~~~V~~l~fs--~~~L~S~s 535 (1133)
..... ++++|+++++-+ .++.|+.|++....+..+.++ -.....|+++ +..+++-.
T Consensus 319 ~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~ 398 (409)
T 3hrp_A 319 EALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEA 398 (409)
T ss_dssp GCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEES
T ss_pred ccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEEC
Confidence 11233 889999777777 889999999654344555555 2357788888 55556656
Q ss_pred ccCCeeeccc
Q 043350 536 AHGGIRGWTF 545 (1133)
Q Consensus 536 ~Dg~I~lW~l 545 (1133)
.++.|+.+.+
T Consensus 399 ~n~~Ir~i~~ 408 (409)
T 3hrp_A 399 WGKAIRKYAV 408 (409)
T ss_dssp TTCEEEEEEE
T ss_pred CCCeEEEEEe
Confidence 6667776654
No 252
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.07 E-value=0.00026 Score=88.34 Aligned_cols=80 Identities=18% Similarity=0.194 Sum_probs=55.5
Q ss_pred CCeEEEEeC-CCCeeEEEecCCcceeE-EecCCCEEEEEecCCeEEEEeCC-CCcceeeeccccCe-EEeee--cc-cce
Q 043350 459 NGLLVQWDG-NGNRVSDILHHQCAVQC-FCTYGSRMYVGYVSGYLQILDLD-GNLTASWIAHSSPV-LKLAV--GV-DHI 531 (1133)
Q Consensus 459 DG~I~vWd~-~g~~l~~~~~h~~~V~~-fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~H~~~V-~~l~f--s~-~~L 531 (1133)
+|.|..||+ +|+.+.++..+...... ++..+.+|++|+.||.|++||.+ |+++-+++...+.+ .-+.| ++ .|+
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence 588999999 67888887765433332 88889999999999999999986 78877776543222 23444 34 455
Q ss_pred eeecccC
Q 043350 532 YSLAAHG 538 (1133)
Q Consensus 532 ~S~s~Dg 538 (1133)
+..+..|
T Consensus 534 ~~~~G~g 540 (689)
T 1yiq_A 534 TFMAGWG 540 (689)
T ss_dssp EEEECCC
T ss_pred EEEecCC
Confidence 5544433
No 253
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=98.07 E-value=5.3e-06 Score=90.69 Aligned_cols=37 Identities=32% Similarity=0.593 Sum_probs=25.9
Q ss_pred eEEEEEEcCCCCCCch-hhhhhhcCCCCCccEEEEeeeeccc
Q 043350 574 ILVGTWNVGQGRASHE-SLLSWLGSVSSDVGIVAVGLQEVEM 614 (1133)
Q Consensus 574 I~v~TWNv~~~~~~~~-~l~~wl~~~~~~~di~vig~QE~~~ 614 (1133)
+.+.||||++...... .+.+|+.. .+||| |+|||+..
T Consensus 4 l~i~s~Nv~g~~~~~~~~l~~~i~~--~~~DI--v~LQEt~~ 41 (265)
T 3g91_A 4 LKIISWNVNGLRAVHRKGFLKWFME--EKPDI--LCLQEIKA 41 (265)
T ss_dssp EEEEEEECSCHHHHHHHTHHHHHHH--HCCSE--EEEECCCS
T ss_pred cEEEEEEcCCchhhhhhhHHHHHHh--cCCCE--EEEEeccc
Confidence 5678999997544333 47788864 45776 57899864
No 254
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.04 E-value=0.00024 Score=88.99 Aligned_cols=244 Identities=11% Similarity=0.068 Sum_probs=134.1
Q ss_pred eEEEEE-eCCCCeEE---ecC----CcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEE
Q 043350 158 FLRNIA-CTDTQLWA---GQE----CGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWT 229 (1133)
Q Consensus 158 ~V~~v~-s~dg~lla---s~D----g~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaS 229 (1133)
.+..++ ||||+++| +.. .+|++||+.+..... ...... ....++|+ |++.|+.
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~---------------~~~~~~---k~~~~~Ws-Dg~~l~y 190 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE---------------TPLKDV---KFSGISWL-GNEGFFY 190 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE---------------EEEEEE---ESCCCEEE-TTTEEEE
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc---------------cccCCc---eeccEEEe-CCCEEEE
Confidence 677778 99999999 222 479999998742110 001111 12456899 9999999
Q ss_pred EeCCCe-------------EEEEeCCCCCCCCCCCccccccccc-CCCCeEEEEEeeCCc-E-EEEeC---CCcEEEEeC
Q 043350 230 GHKDGK-------------IRSWKMDQTLDDANNPFKEGLSWQA-HRGPVLAMIFSSQGD-L-WSGGE---GGVIKIWPW 290 (1133)
Q Consensus 230 gs~Dg~-------------V~vWd~~~~~~~~~~~~~~~~~l~g-H~~~V~sl~fsp~g~-L-~Sgs~---DgtI~iWdl 290 (1133)
++.+.. |++|++.+... .-..+..... |...+.++.|+|+|+ | ++.+. +..|.+||+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~----~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~ 266 (693)
T 3iuj_A 191 SSYDKPDGSELSARTDQHKVYFHRLGTAQE----DDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDL 266 (693)
T ss_dssp EESSCCC-------CCCCEEEEEETTSCGG----GCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEET
T ss_pred EEecCcccccccccCCCcEEEEEECCCCcc----cceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEEC
Confidence 888744 99999876211 0012223334 555678999999999 4 44443 358899998
Q ss_pred CCC---ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCce--
Q 043350 291 ESI---EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKEL-- 365 (1133)
Q Consensus 291 ~~~---~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~-- 365 (1133)
.+. ...+....+.... .+. +.++..++.+..+ ...+.|..||+.++..
T Consensus 267 ~~~~~~~~~l~~~~~~~~~--------~~~-------------~~g~~l~~~t~~~------~~~~~l~~~d~~~~~~~~ 319 (693)
T 3iuj_A 267 SQENAPLLTVQGDLDADVS--------LVD-------------NKGSTLYLLTNRD------APNRRLVTVDAANPGPAH 319 (693)
T ss_dssp TSTTCCCEEEECSSSSCEE--------EEE-------------EETTEEEEEECTT------CTTCEEEEEETTSCCGGG
T ss_pred CCCCCceEEEeCCCCceEE--------EEe-------------ccCCEEEEEECCC------CCCCEEEEEeCCCCCccc
Confidence 653 2222222221110 000 1223333333311 2246788888887654
Q ss_pred eEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCC-c--cccccccccceeeccCCceEEEEEecCCcccCCCCCE
Q 043350 366 LKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKE-K--PHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRT 442 (1133)
Q Consensus 366 l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg-~--i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V 442 (1133)
.+.+..+...+. .++++++. |+....++ . |+.++.. ......+.+ .....+
T Consensus 320 ~~~l~~~~~~~~--~~s~~g~~---------lv~~~~~~g~~~l~~~d~~--------g~~~~~l~~-------p~~~~~ 373 (693)
T 3iuj_A 320 WRDLIPERQQVL--TVHSGSGY---------LFAEYMVDATARVEQFDYE--------GKRVREVAL-------PGLGSV 373 (693)
T ss_dssp CEEEECCCSSCE--EEEEETTE---------EEEEEEETTEEEEEEECTT--------SCEEEEECC-------SSSSEE
T ss_pred cEEEecCCCCEE--EEEEECCE---------EEEEEEECCeeEEEEEECC--------CCeeEEeec-------CCCceE
Confidence 455666655554 88888887 65554433 2 2211111 111112211 122345
Q ss_pred EEEEECCCC-eEEEEecC----CeEEEEeCCCCeeEEEec
Q 043350 443 EAMVLTADG-MIWSGCTN----GLLVQWDGNGNRVSDILH 477 (1133)
Q Consensus 443 ~sl~~spdg-~L~sgs~D----G~I~vWd~~g~~l~~~~~ 477 (1133)
..+.+++++ .|+....+ ++|..||+.+.....+..
T Consensus 374 ~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~~ 413 (693)
T 3iuj_A 374 SGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYRA 413 (693)
T ss_dssp EECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEEC
T ss_pred EeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEEe
Confidence 556667777 55555444 889999985544444443
No 255
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.02 E-value=0.00075 Score=77.33 Aligned_cols=141 Identities=8% Similarity=-0.077 Sum_probs=88.8
Q ss_pred cCCCCCEEEEecC-----CCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE-ec----------
Q 043350 111 FQPMVEFIGSGGG-----TGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA-GQ---------- 173 (1133)
Q Consensus 111 ~~p~g~~lasgs~-----dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla-s~---------- 173 (1133)
..|++..+..... ++.|.+.|..+ .+. +.++..-.. + . ++ ++||+.+. +.
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t---~~v-~~~I~vG~~-------P-~-va~spDG~~lyVan~~~~r~~~G~ 106 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEA---GRV-IGMIDGGFL-------P-N-PVVADDGSFIAHASTVFSRIARGE 106 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTT---TEE-EEEEEECSS-------C-E-EEECTTSSCEEEEEEEEEETTEEE
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCC---CeE-EEEEECCCC-------C-c-EEECCCCCEEEEEcccccccccCC
Confidence 3788888777654 67899998873 333 555543222 3 3 67 99998765 32
Q ss_pred -CCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeecc------CCCCeEEEEEeCCCCEEEEEeC--CCeEEEEeCCCC
Q 043350 174 -ECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESA------NTSPTMCLMVDCGNRLVWTGHK--DGKIRSWKMDQT 244 (1133)
Q Consensus 174 -Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~------h~s~V~~la~spd~~~LaSgs~--Dg~V~vWd~~~~ 244 (1133)
++.|.+||..+..... .+... ....-..++++|||++|+.+.. ++.|.++|+...
T Consensus 107 ~~~~VsviD~~t~~v~~----------------~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~ 170 (386)
T 3sjl_D 107 RTDYVEVFDPVTLLPTA----------------DIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK 170 (386)
T ss_dssp EEEEEEEECTTTCCEEE----------------EEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred CCCEEEEEECCCCeEEE----------------EEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC
Confidence 5789999998742110 00000 0112356889999999988864 689999999871
Q ss_pred CCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCC
Q 043350 245 LDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWES 292 (1133)
Q Consensus 245 ~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~ 292 (1133)
+.+.++.-- + +..+.|.|. +++.+.||++.+.++..
T Consensus 171 --------~vv~tI~v~-g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 171 --------AFKRMLDVP-D---CYHIFPTAPDTFFMHCRDGSLAKVAFGT 208 (386)
T ss_dssp --------EEEEEEECC-S---EEEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred --------cEEEEEECC-C---cceeecCCCceeEEECCCCCEEEEECCC
Confidence 222233211 1 112235444 88999999999998865
No 256
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.02 E-value=0.00071 Score=78.80 Aligned_cols=266 Identities=7% Similarity=-0.007 Sum_probs=145.8
Q ss_pred CCCCEEEEEeCC-----CeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEe----------CCCcE
Q 043350 222 CGNRLVWTGHKD-----GKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGG----------EGGVI 285 (1133)
Q Consensus 222 pd~~~LaSgs~D-----g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs----------~DgtI 285 (1133)
++++.++..... ++|.+.|... .+.+..+..-..+ .++++|+|+ |+.+. .++.|
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t--------~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~V 151 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGST--------GRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYV 151 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTT--------TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCC--------CEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEE
Confidence 366666665542 6999999886 1334444433445 899999999 66665 47789
Q ss_pred EEEeCCCCc--eeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCC
Q 043350 286 KIWPWESIE--KSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSK 363 (1133)
Q Consensus 286 ~iWdl~~~~--~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg 363 (1133)
.++|..+.. ..+........ .. ...-..+...+++...++... ..++.|.+.|+.++
T Consensus 152 sviD~~t~~vv~~I~v~g~~r~-~~------------g~~P~~~~~spDGk~lyV~n~--------~~~~~VsVID~~t~ 210 (426)
T 3c75_H 152 EVFDPVTFLPIADIELPDAPRF-LV------------GTYQWMNALTPDNKNLLFYQF--------SPAPAVGVVDLEGK 210 (426)
T ss_dssp EEECTTTCCEEEEEEETTCCCC-CB------------SCCGGGSEECTTSSEEEEEEC--------SSSCEEEEEETTTT
T ss_pred EEEECCCCcEEEEEECCCcccc-cc------------CCCcceEEEcCCCCEEEEEec--------CCCCeEEEEECCCC
Confidence 999998732 22222100000 00 000001111122222222221 23678999999999
Q ss_pred ceeEEEecCCcc-e------eEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCccc
Q 043350 364 ELLKVFNIEGHI-E------NRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFV 436 (1133)
Q Consensus 364 ~~l~~~~~h~~~-v------~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~ 436 (1133)
+.+.++...... + .-+.+++++.+ ++....++++.. .. . ..+.
T Consensus 211 kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~---------~~V~~~~~~v~~------------------~~-~--~~~~ 260 (426)
T 3c75_H 211 TFDRMLDVPDCYHIFPASPTVFYMNCRDGSL---------ARVDFADGETKV------------------TN-T--EVFH 260 (426)
T ss_dssp EEEEEEECCSEEEEEEEETTEEEEEETTSSE---------EEEECCTTCCEE------------------EE-C--CCCS
T ss_pred eEEEEEEcCCceeeccCCCcEEEEEcCCCCE---------EEEECCCCcEEE------------------Ee-e--eeec
Confidence 999888753320 0 01233344433 222223333210 00 0 0000
Q ss_pred CCCCC-EEEEEECCCC-eEEEEecCCeEEEEeCCCCeeEE---Ee------------cCCcceeEEecCCCEEEEEec--
Q 043350 437 DDTKR-TEAMVLTADG-MIWSGCTNGLLVQWDGNGNRVSD---IL------------HHQCAVQCFCTYGSRMYVGYV-- 497 (1133)
Q Consensus 437 ~h~~~-V~sl~~spdg-~L~sgs~DG~I~vWd~~g~~l~~---~~------------~h~~~V~~fs~dg~~Lasgs~-- 497 (1133)
-...+ ...+.+++++ .++.....|.|.+.|..+..+.. +. ........+++++++|++...
T Consensus 261 v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~ 340 (426)
T 3c75_H 261 TEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQR 340 (426)
T ss_dssp CTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEEC
T ss_pred cCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccc
Confidence 00011 1123467777 66666678899999985432221 11 011112469999998888753
Q ss_pred --------CCeEEEEeCCC-CcceeeeccccCeEEeeec--cc-ceeeec-ccCCeeeccccCCC
Q 043350 498 --------SGYLQILDLDG-NLTASWIAHSSPVLKLAVG--VD-HIYSLA-AHGGIRGWTFTSPS 549 (1133)
Q Consensus 498 --------DG~I~vwd~~g-~~l~~~~~H~~~V~~l~fs--~~-~L~S~s-~Dg~I~lW~l~s~~ 549 (1133)
++.|.++|... +.+..+..-. ...+|+|+ ++ .++++. .++.|.++|+.+..
T Consensus 341 ~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 341 DEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp CTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred ccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 45899999974 5666665322 46788888 66 777776 58999999977643
No 257
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.99 E-value=8.4e-06 Score=93.89 Aligned_cols=61 Identities=11% Similarity=0.146 Sum_probs=38.8
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCC
Q 043350 223 GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESI 293 (1133)
Q Consensus 223 d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~ 293 (1133)
++.+|++++.||.|+.||..++ +.+..+.. +.+.+..+..++. +++++.||.|+.||..++
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG--------~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG 69 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTG--------SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNN 69 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTC--------CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----
T ss_pred eCCEEEEEcCCCEEEEEECCCC--------CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCC
Confidence 5788999999999999998762 33333333 4565666667777 888889999999998653
No 258
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.98 E-value=4.6e-05 Score=85.20 Aligned_cols=249 Identities=11% Similarity=0.096 Sum_probs=147.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCCCCceeeEeCCCC
Q 043350 224 NRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWESIEKSLSLKPEE 303 (1133)
Q Consensus 224 ~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~~~~~~l~~~~~~ 303 (1133)
+..|+.|+.++.|..|| ..+ +.......+...+.++...++|.|+.++.+ |..+|.... .........
T Consensus 30 ~g~l~v~t~~~~l~~~d-~~g--------~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~~g~-~~~~~~~~~ 97 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAIN-TDG--------SVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINPDGT-EKWRFDTKK 97 (330)
T ss_dssp TSCEECSSTTTTTEEEC-TTS--------CEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECCCGG-GGGGSCC--
T ss_pred CCeEEEEcCCCEEEEEC-CCC--------cEEEEEecCCCcccceEEecCCcEEEecCc--EEEECCCCc-EEEEEECCC
Confidence 34567788889999999 431 222223333445677777777776666665 777775321 111111000
Q ss_pred ceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEec-CCCceeEeecCCCceeEEEecCCcceeEEEeC
Q 043350 304 KHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCA-QPLSFSLWDARSKELLKVFNIEGHIENRVDTQ 382 (1133)
Q Consensus 304 ~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss-~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~s 382 (1133)
.. .. ...+. ++ .+|.+ .++.|..+|.. ++.+..+......+.++...
T Consensus 98 ~~--------------------------~~-~~~~~--~~--~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~ 145 (330)
T 3hxj_A 98 AI--------------------------VS-DFTIF--ED--ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVS 145 (330)
T ss_dssp -----------------------------C-CEEEE--TT--EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC
T ss_pred Cc--------------------------cc-CceEE--CC--EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEc
Confidence 00 00 00011 12 23322 36778888887 77776666555556666666
Q ss_pred CCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeE
Q 043350 383 SVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLL 462 (1133)
Q Consensus 383 p~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I 462 (1133)
+++. ++.++.++.+..++.. .. .++.... ....+.++...+++.|+.++ +.|
T Consensus 146 ~~g~----------l~vgt~~~~l~~~d~~-g~-------~~~~~~~--------~~~~~~~~~~d~~g~l~v~t--~~l 197 (330)
T 3hxj_A 146 EDGT----------IYVGSNDNYLYAINPD-GT-------EKWRFKT--------NDAITSAASIGKDGTIYFGS--DKV 197 (330)
T ss_dssp TTSC----------EEEECTTSEEEEECTT-SC-------EEEEEEC--------SSCCCSCCEECTTCCEEEES--SSE
T ss_pred CCCE----------EEEEcCCCEEEEECCC-CC-------EeEEEec--------CCCceeeeEEcCCCEEEEEe--CEE
Confidence 6664 4556666666533322 11 1121111 12234455666777677776 789
Q ss_pred EEEeCCCCeeEEEecCCcceeE--EecCCCEEEEEecCCeEEEEeCCCCcceeeeccccCeEEeeec-ccceeeecccCC
Q 043350 463 VQWDGNGNRVSDILHHQCAVQC--FCTYGSRMYVGYVSGYLQILDLDGNLTASWIAHSSPVLKLAVG-VDHIYSLAAHGG 539 (1133)
Q Consensus 463 ~vWd~~g~~l~~~~~h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g~~l~~~~~H~~~V~~l~fs-~~~L~S~s~Dg~ 539 (1133)
..||.+|+.+..+......+.+ +.++| .|++++.++.|..+|.+++.+..+......+.++.+. +..|+.++.+|.
T Consensus 198 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~gg 276 (330)
T 3hxj_A 198 YAINPDGTEKWNFYAGYWTVTRPAISEDG-TIYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGH 276 (330)
T ss_dssp EEECTTSCEEEEECCSSCCCSCCEECTTS-CEEEEETTTEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTCE
T ss_pred EEECCCCcEEEEEccCCcceeceEECCCC-eEEEEcCCCeEEEECCCCCEeEEeeCCCCccccceEcCCCeEEEecCCCC
Confidence 9999777777777666556666 44444 6788888899999998777665555555545556666 778888888888
Q ss_pred eeeccc
Q 043350 540 IRGWTF 545 (1133)
Q Consensus 540 I~lW~l 545 (1133)
|..++.
T Consensus 277 l~~~d~ 282 (330)
T 3hxj_A 277 LYAINP 282 (330)
T ss_dssp EEEECT
T ss_pred EEEECC
Confidence 888873
No 259
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.95 E-value=0.00025 Score=82.65 Aligned_cols=263 Identities=10% Similarity=-0.043 Sum_probs=139.0
Q ss_pred CcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEe----------CCCeEEEEeCCCC
Q 043350 175 CGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGH----------KDGKIRSWKMDQT 244 (1133)
Q Consensus 175 g~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs----------~Dg~V~vWd~~~~ 244 (1133)
+.|.+.|..+..-. ..+. .-..| .++++||+++|+.+. .++.|.++|....
T Consensus 99 ~~VsVID~~t~~vv----------------~~I~-vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 99 TQQFVIDGSTGRIL----------------GMTD-GGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp EEEEEEETTTTEEE----------------EEEE-ECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CeEEEEECCCCEEE----------------EEEE-CCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 68999998773221 1111 12235 799999999988876 4678999998861
Q ss_pred CCCCCCCcccccccc-c------CCCCeEEEEEeeCCc-EEEEeC--CCcEEEEeCCCCceeeEeCCCCceEEEEeecce
Q 043350 245 LDDANNPFKEGLSWQ-A------HRGPVLAMIFSSQGD-LWSGGE--GGVIKIWPWESIEKSLSLKPEEKHMAALLVERS 314 (1133)
Q Consensus 245 ~~~~~~~~~~~~~l~-g------H~~~V~sl~fsp~g~-L~Sgs~--DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s 314 (1133)
+.+..+. + ....-..++|+|+|+ |+.+.. +++|.+.|+.+....-.+.-.+..
T Consensus 160 --------~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~--------- 222 (426)
T 3c75_H 160 --------LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCY--------- 222 (426)
T ss_dssp --------CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE---------
T ss_pred --------cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCce---------
Confidence 2222221 1 112345789999999 777664 678999999873211111100000
Q ss_pred EEEccCceeeeccccCCCC-CeEEEEecCCceEEEecCCCceeEeecCCCceeEE----EecCCcce-eEEEeCCCCCcc
Q 043350 315 FIDLRAQVTVNGACSISST-EIKCMLSDHARARVWCAQPLSFSLWDARSKELLKV----FNIEGHIE-NRVDTQSVQDQP 388 (1133)
Q Consensus 315 ~~d~~~~~~v~~~~~~~~~-~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~----~~~h~~~v-~~l~~sp~g~~~ 388 (1133)
.+. +.+ ...+.. +.|+.+.+.|..+++.... +.....++ ..+.+.+++..
T Consensus 223 ~~~-------------p~g~~~~v~~----------~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~- 278 (426)
T 3c75_H 223 HIF-------------PASPTVFYMN----------CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGR- 278 (426)
T ss_dssp EEE-------------EEETTEEEEE----------ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCE-
T ss_pred eec-------------cCCCcEEEEE----------cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCE-
Confidence 000 101 111222 3344555555544443321 21112221 13456666655
Q ss_pred ccccceEEEEeeCCCCccccccc--cccceeec---c-CCceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEec---
Q 043350 389 VEDEMKVKFVSSNKKEKPHGFLQ--RSRNAIMG---A-ADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCT--- 458 (1133)
Q Consensus 389 ~e~e~~v~lasgs~Dg~i~~~~~--~~~~~~~~---~-~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~--- 458 (1133)
++..+..+++...+. .....+.. . ...+ ...+.| .....+++++++ .+++...
T Consensus 279 --------~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i-~~g~~p--------~g~~~va~s~dg~rlyVa~~~~~ 341 (426)
T 3c75_H 279 --------LVWPTYTGKIFQADLTAEGATFRAPIEALTEAER-ADDWRP--------GGWQQTAYHRQSDRIYLLVDQRD 341 (426)
T ss_dssp --------EEEEBTTSEEEEEEECSSCEEECCCEESSCTTTG-GGTEEE--------CSSSCEEEEGGGTEEEEEEEECC
T ss_pred --------EEEEeCCCcEEEEeccCCceEEeeeeeecccccc-cccccc--------CCceeeEEcCCCCEEEEEecccc
Confidence 444445555542221 10000000 0 0000 000011 111135688888 6665532
Q ss_pred -------CCeEEEEeC-CCCeeEEEecCCccee-EEecCCC-EEEEEe-cCCeEEEEeCC-CCcceee
Q 043350 459 -------NGLLVQWDG-NGNRVSDILHHQCAVQ-CFCTYGS-RMYVGY-VSGYLQILDLD-GNLTASW 514 (1133)
Q Consensus 459 -------DG~I~vWd~-~g~~l~~~~~h~~~V~-~fs~dg~-~Lasgs-~DG~I~vwd~~-g~~l~~~ 514 (1133)
++.|.+.|. +.+.+.++.....+-. .|++||+ +|++.. .++.|.|+|+. ++.++++
T Consensus 342 ~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 342 EWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred cccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 357999999 5688888865332222 2999999 888888 59999999997 4666655
No 260
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.75 E-value=0.0024 Score=79.44 Aligned_cols=46 Identities=22% Similarity=0.468 Sum_probs=31.8
Q ss_pred ECCCC-eEEEEecCCeEEEEeC-CCCeeEEEecCCccee---EEecCCCEE
Q 043350 447 LTADG-MIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQ---CFCTYGSRM 492 (1133)
Q Consensus 447 ~spdg-~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~---~fs~dg~~L 492 (1133)
+..++ .++.++.||.+++||. +|+.+.++......+. .+..+|+.+
T Consensus 484 ~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~ 534 (677)
T 1kb0_A 484 LTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY 534 (677)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred eEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEE
Confidence 34445 7888889999999998 7888888876442222 256788633
No 261
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.75 E-value=0.00045 Score=78.33 Aligned_cols=261 Identities=10% Similarity=0.007 Sum_probs=124.7
Q ss_pred cccCCCCCEEEEec--CCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEE--ec-----CCcEE
Q 043350 109 KPFQPMVEFIGSGG--GTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWA--GQ-----ECGVR 178 (1133)
Q Consensus 109 ~~~~p~g~~lasgs--~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~lla--s~-----Dg~Vr 178 (1133)
+.++|+|+++++.. .++.++||.+.. ++ +..+..........-..+..|+ .+++.+++ .. ++.|.
T Consensus 22 va~~~~g~~~v~~~~~~~~~~~l~~~~~---g~--~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 22 ITLTPDGRLFLSLHQFYQPEMQVAELTQ---DG--LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp EEECTTSCEEEEECGGGCCSCSEEEEET---TE--EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred EEECCCCCEEEEeCCCCCCceEEEEECC---CC--eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 66789999988863 234355665431 22 1111110000001112688888 88898888 22 57899
Q ss_pred EeeCCCC--CCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCE-EEEEe---CCCeEEEEeCCCCCCCCCCCc
Q 043350 179 FWNLEDS--YEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRL-VWTGH---KDGKIRSWKMDQTLDDANNPF 252 (1133)
Q Consensus 179 vWdl~~~--~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~-LaSgs---~Dg~V~vWd~~~~~~~~~~~~ 252 (1133)
+||+.+. ...+.... . ...+.+.+..+++++++.. .++.. .++.|.+||+..+.
T Consensus 97 ~~d~~tg~~~~~~~~~~-----------~--~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~------- 156 (343)
T 2qe8_A 97 AWDTLNNQLSRVIYLPP-----------P--ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL------- 156 (343)
T ss_dssp EEETTTTEEEEEEECCT-----------T--TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC-------
T ss_pred EEECCCCeEEEEEECCh-----------h--hcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC-------
Confidence 9998752 12111000 0 0122334678999986444 45555 67899999987521
Q ss_pred ccccccccCCCCeE-EEEEeeCCc-EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecc-eEEEccCce-------
Q 043350 253 KEGLSWQAHRGPVL-AMIFSSQGD-LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVER-SFIDLRAQV------- 322 (1133)
Q Consensus 253 ~~~~~l~gH~~~V~-sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~-s~~d~~~~~------- 322 (1133)
....+.+|..... ...+.++|. +.+.+.|++++.|.. ....+.+++++..+....... .++.+....
T Consensus 157 -~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~--~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~ 233 (343)
T 2qe8_A 157 -AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL--GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLT 233 (343)
T ss_dssp -EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC--CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCC
T ss_pred -EEEEecCCCcccccccceeECCEEEEeccCCCceeceec--ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCC
Confidence 1111222210000 012222333 333333444333321 122233333333333222211 111111000
Q ss_pred ------eeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecC-CcceeEEEeCCCCCccccccceE
Q 043350 323 ------TVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIE-GHIENRVDTQSVQDQPVEDEMKV 395 (1133)
Q Consensus 323 ------~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h-~~~v~~l~~sp~g~~~~e~e~~v 395 (1133)
.+........++... ...++.+.+-...++.|.+||..+|+........ .....++++.+++.+
T Consensus 234 ~~~~~~~~~~~g~~g~pdgia-~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l-------- 304 (343)
T 2qe8_A 234 DAELGSKIERYSEKPICDGIS-IDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYL-------- 304 (343)
T ss_dssp HHHHHTTCEEEEECCSCSCEE-ECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCE--------
T ss_pred hhhhhcceEecccCCCCceEE-ECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcE--------
Confidence 000000001223322 2234555555567889999998667644333322 345789999999887
Q ss_pred EEEeeCCCCccc
Q 043350 396 KFVSSNKKEKPH 407 (1133)
Q Consensus 396 ~lasgs~Dg~i~ 407 (1133)
+++.+..+.+.
T Consensus 305 -~v~~~~~~~~~ 315 (343)
T 2qe8_A 305 -YFDCNQLHHSA 315 (343)
T ss_dssp -EEEECCGGGSG
T ss_pred -EEEeCcccccc
Confidence 77777665553
No 262
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.71 E-value=1.2e-05 Score=92.57 Aligned_cols=171 Identities=11% Similarity=0.069 Sum_probs=89.0
Q ss_pred cCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCceEEEEE
Q 043350 350 AQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAVRRVAT 429 (1133)
Q Consensus 350 s~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V~~v~~ 429 (1133)
+.|+.|..||..+|+.+..+.. ..+.+..+..++.. +++++.|+.++.++...... ++...+
T Consensus 16 s~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~---------~v~~s~dg~l~a~d~~tG~~-------~w~~~~ 77 (369)
T 2hz6_A 16 TLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPA---------FLPDPNDGSLYTLGSKNNEG-------LTKLPF 77 (369)
T ss_dssp ETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CC---------EEECTTTCCEEEC-----CC-------SEECSC
T ss_pred cCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCE---------EEEeCCCCEEEEEECCCCce-------eeeeec
Confidence 4678899999999999988876 34444444556666 78888999987554321111 111100
Q ss_pred ecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeC-CCCeeEEEecCCcceeEEecCCCEEEEEecCCeEEEEeCC-
Q 043350 430 RGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDG-NGNRVSDILHHQCAVQCFCTYGSRMYVGYVSGYLQILDLD- 507 (1133)
Q Consensus 430 ~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~~V~~fs~dg~~Lasgs~DG~I~vwd~~- 507 (1133)
.. +... ...+ .+..++.|++|+.||.|+.||. +|+.+..+..+. ...++|++..|++++.|+.|+.||..
T Consensus 78 ~~-~~~~-~~sp----~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~--~~~~~p~~~~v~~~~~dg~v~a~d~~t 149 (369)
T 2hz6_A 78 TI-PELV-QASP----CRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF--ADSLSPSTSLLYLGRTEYTITMYDTKT 149 (369)
T ss_dssp CH-HHHH-TTCS----CC-----CCCCEEEEEEEEECCC------------------------EEEEEEEEEEECCCSSS
T ss_pred cC-cccc-ccCc----eEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC--cccccccCCEEEEEecCCEEEEEECCC
Confidence 00 0000 0001 0113447888899999999999 688887776653 12367788999999999999999986
Q ss_pred CCcceeeeccccCeEEeeecc-----cceeeecccCCeeeccccCC
Q 043350 508 GNLTASWIAHSSPVLKLAVGV-----DHIYSLAAHGGIRGWTFTSP 548 (1133)
Q Consensus 508 g~~l~~~~~H~~~V~~l~fs~-----~~L~S~s~Dg~I~lW~l~s~ 548 (1133)
|+++-.+..+. ....++.+ ..++.++.||.|..||..+.
T Consensus 150 G~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 150 RELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG 193 (369)
T ss_dssp SSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred CCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCC
Confidence 56544443322 12333333 67888899999999997654
No 263
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.61 E-value=0.0034 Score=78.05 Aligned_cols=99 Identities=19% Similarity=0.165 Sum_probs=69.4
Q ss_pred eEEEEecCCeEEEEeC-CCCeeEEEecCCc-----------c--------------------------eeEEecCCCEEE
Q 043350 452 MIWSGCTNGLLVQWDG-NGNRVSDILHHQC-----------A--------------------------VQCFCTYGSRMY 493 (1133)
Q Consensus 452 ~L~sgs~DG~I~vWd~-~g~~l~~~~~h~~-----------~--------------------------V~~fs~dg~~La 493 (1133)
.|+.++.+|.|.++|. +|+.+..+..... + -.+++|++.+++
T Consensus 329 ~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~y 408 (677)
T 1kb0_A 329 VILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVY 408 (677)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEE
T ss_pred EEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEE
Confidence 6888999999999999 7888776653210 0 124788888888
Q ss_pred EEecC-------------------------------------------CeEEEEeCC-CCcceeeeccccCeEEeeec--
Q 043350 494 VGYVS-------------------------------------------GYLQILDLD-GNLTASWIAHSSPVLKLAVG-- 527 (1133)
Q Consensus 494 sgs~D-------------------------------------------G~I~vwd~~-g~~l~~~~~H~~~V~~l~fs-- 527 (1133)
++..+ |.|..||+. ++.+-.+. +..++.+..+.
T Consensus 409 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~ 487 (677)
T 1kb0_A 409 LPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTA 487 (677)
T ss_dssp EEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEET
T ss_pred EeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeC
Confidence 86542 789999987 45433332 33444443343
Q ss_pred ccceeeecccCCeeeccccCCCCc
Q 043350 528 VDHIYSLAAHGGIRGWTFTSPSPL 551 (1133)
Q Consensus 528 ~~~L~S~s~Dg~I~lW~l~s~~~l 551 (1133)
+..++.++.||.+++||+.+...+
T Consensus 488 g~~v~~g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 488 GNVVFQGTADGRLVAYHAATGEKL 511 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEECCCCcEEEEECCCCcee
Confidence 788999999999999998876543
No 264
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.59 E-value=0.0051 Score=76.63 Aligned_cols=53 Identities=15% Similarity=0.073 Sum_probs=36.4
Q ss_pred CCeEEEEeCC-CCcceeeeccccCeEE--eeecccceeeecccCCeeeccccCCCCc
Q 043350 498 SGYLQILDLD-GNLTASWIAHSSPVLK--LAVGVDHIYSLAAHGGIRGWTFTSPSPL 551 (1133)
Q Consensus 498 DG~I~vwd~~-g~~l~~~~~H~~~V~~--l~fs~~~L~S~s~Dg~I~lW~l~s~~~l 551 (1133)
+|.|+.||+. |+.+-.+..+. ++.. +...+..|+.++.||.|+.||..+...+
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 4889999997 55544443333 3332 2233889999999999999998876543
No 265
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.56 E-value=0.005 Score=70.30 Aligned_cols=73 Identities=12% Similarity=0.009 Sum_probs=46.1
Q ss_pred EEECCCC-eEEEEec-C--------CeEEEEeC-CCCeeEEEecCCcceeE--EecCCCE-EEEEe-cCCeEEEEeCCC-
Q 043350 445 MVLTADG-MIWSGCT-N--------GLLVQWDG-NGNRVSDILHHQCAVQC--FCTYGSR-MYVGY-VSGYLQILDLDG- 508 (1133)
Q Consensus 445 l~~spdg-~L~sgs~-D--------G~I~vWd~-~g~~l~~~~~h~~~V~~--fs~dg~~-Lasgs-~DG~I~vwd~~g- 508 (1133)
+++++++ .++.+.. + +.+.++|. ..+.+.++.... ...+ |++||++ +++.. .+++|.++|+..
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~ 347 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD 347 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCC
Confidence 5688888 6665432 2 34568998 556777665543 2333 8888874 44444 488999999874
Q ss_pred Ccceeeeccc
Q 043350 509 NLTASWIAHS 518 (1133)
Q Consensus 509 ~~l~~~~~H~ 518 (1133)
+.+.++....
T Consensus 348 kvv~~I~vg~ 357 (368)
T 1mda_H 348 QDQSSVELDK 357 (368)
T ss_dssp EEEEECCCCS
T ss_pred cEEEEEECCC
Confidence 5565555443
No 266
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.56 E-value=0.0061 Score=68.06 Aligned_cols=239 Identities=12% Similarity=0.107 Sum_probs=126.1
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccc--------------------cCCCCeEEEEEee
Q 043350 213 SPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQ--------------------AHRGPVLAMIFSS 272 (1133)
Q Consensus 213 s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~--------------------gH~~~V~sl~fsp 272 (1133)
....+++|++++++++++..++.|..|+..+. .+..+. .......+|++.+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~ 89 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNS---------GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL 89 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTT---------CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCC---------ceEEEecccccccccccccccchhccccCCCCceEEEcC
Confidence 34567889999988899999999999987651 111111 1123578999997
Q ss_pred -CCcEEEEeCCCcEEEEeCCCC-ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEec-CCceEEEe
Q 043350 273 -QGDLWSGGEGGVIKIWPWESI-EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSD-HARARVWC 349 (1133)
Q Consensus 273 -~g~L~Sgs~DgtI~iWdl~~~-~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~-d~~i~vws 349 (1133)
+|+|+.+...+.|..+|..+. ...+.....+.. + ..+.. +.+.. ++.+.+..
T Consensus 90 ~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~------------~------------~~p~~-i~~d~~~G~l~v~d 144 (322)
T 2fp8_A 90 QNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVP------------F------------KWLYA-VTVDQRTGIVYFTD 144 (322)
T ss_dssp TTTEEEEEETTTEEEEECTTCEECEEEESEETTEE------------C------------SCEEE-EEECTTTCCEEEEE
T ss_pred CCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCc------------c------------cccce-EEEecCCCEEEEEC
Confidence 677776765566888887642 111111000000 0 00000 11111 22222221
Q ss_pred c-----------------CCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccccc
Q 043350 350 A-----------------QPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQR 412 (1133)
Q Consensus 350 s-----------------~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~ 412 (1133)
. .++.|..||..+++...... .....+.+++++++.. + +++-+..+.|..++..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~-------l-yv~d~~~~~I~~~~~~ 215 (322)
T 2fp8_A 145 VSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSF-------V-LVAEFLSHQIVKYWLE 215 (322)
T ss_dssp SCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSE-------E-EEEEGGGTEEEEEESS
T ss_pred CcccccccccceehcccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCE-------E-EEEeCCCCeEEEEECC
Confidence 1 13567777876665432222 1223457899999875 0 3343455566422211
Q ss_pred ccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEe-c----------CCeEEEEeCCCCeeEEEecCC--
Q 043350 413 SRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGC-T----------NGLLVQWDGNGNRVSDILHHQ-- 479 (1133)
Q Consensus 413 ~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs-~----------DG~I~vWd~~g~~l~~~~~h~-- 479 (1133)
.. .......+. . + .+ ...+++.++|.|+.+. . .+.|..+|.+|+.+..+....
T Consensus 216 ~~-----~~~~~~~~~-~----~---~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~ 281 (322)
T 2fp8_A 216 GP-----KKGTAEVLV-K----I---PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPF 281 (322)
T ss_dssp ST-----TTTCEEEEE-E----C---SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTT
T ss_pred CC-----cCCccceEE-e----C---CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCC
Confidence 00 001111111 1 1 11 5668889999444443 2 467889999888887776532
Q ss_pred --cceeEE-ecCCCEEEEEecCCeEEEEeCCC
Q 043350 480 --CAVQCF-CTYGSRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 480 --~~V~~f-s~dg~~Lasgs~DG~I~vwd~~g 508 (1133)
..+.++ ..++++.++....+.|.++++..
T Consensus 282 ~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 282 AGEHFEQIQEHDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TTSCCCEEEEETTEEEEECSSCSEEEEEEC--
T ss_pred ccccceEEEEeCCEEEEeecCCCceEEEeccc
Confidence 234442 23444444444678899999864
No 267
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.49 E-value=0.00034 Score=66.58 Aligned_cols=89 Identities=18% Similarity=0.238 Sum_probs=70.2
Q ss_pred CCceEEecCeEEecccceEEEEEEECCccceEEEEEeecCCCcccCCCCCCccccCCCcCCCCceEEecCceEECCCCeE
Q 043350 954 IPETIVSTESIILQNQDTCTLRITNKSAQEKAIFKIICDGQSTVKDDGDASDYRLRGSFGFPRWLEVTPAAGVIKPDSYI 1033 (1133)
Q Consensus 954 ~p~~~~~~~~~~~~~~~~~~~~i~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~p~~~~~~p~~~~ 1033 (1133)
+|+ .++++.+..+...++.|.|.|+|.. ++.|++.. ++=..|+|..|.|.|||++
T Consensus 28 ~p~-~l~fg~~~v~~~~~~~~~l~N~g~~-~~~f~~~~-----------------------~~~F~i~P~~g~L~pg~~~ 82 (122)
T 2ys4_A 28 FPD-KLNFSTCPVKYSTQKILLVRNIGNK-NAVFHIKT-----------------------CRPFSIEPAIGTLNVGESM 82 (122)
T ss_dssp CCS-EECCCSEESSSCEEEEEEEECCSSS-CEEEEEEC-----------------------CTTEEEESSEEEECTTCEE
T ss_pred CCC-eeecCCeecCCeEEEEEEEEECCCC-CEEEEEec-----------------------CCCeEEECCcCEECCCCEE
Confidence 343 6788888888889999999999998 89999862 1235899999999999999
Q ss_pred EEEEEEeeccchhhhhcCCCCCCcccccCCceeEEEEEEEccccCCCeeeEEEeee
Q 043350 1034 EVSVHHEEFHTLEEFVDGIPQNWWCEDTRDKEVMLSLVVQGCCSNDTRKHQIRVRH 1089 (1133)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 1089 (1133)
+|+++..=. ..| .-+..|++++.+ |.++.|+++|
T Consensus 83 ~i~V~F~P~------~~g-----------~~~~~l~v~~~~-----g~~~~v~L~G 116 (122)
T 2ys4_A 83 QLEVEFEPQ------SVG-----------DHSGRLIVCYDT-----GEKVFVSLYG 116 (122)
T ss_dssp EEEEEECCS------SSB-----------CCCCBCEEEESS-----SCEECCEECC
T ss_pred EEEEEEEcC------CCc-----------cEEEEEEEEECC-----CCEEEEEEEE
Confidence 999995221 223 457778888888 7788888876
No 268
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.47 E-value=1.6e-05 Score=99.89 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=0.0
Q ss_pred CeEEEEEecccccChHHHHHHHHHHHHHHHhC
Q 043350 708 DRTICFVNCHLAAHLEAVNRRNADYDHIYRNM 739 (1133)
Q Consensus 708 ~~~~~fvn~Hlaa~~~~~~~Rn~d~~~i~~~~ 739 (1133)
+..|+++|+||.++...-..|-.....|++.|
T Consensus 546 g~~l~V~ntHL~~~p~~~~~R~~Qa~~l~~~l 577 (727)
T 4b8c_D 546 GDTIWAVTTHLHWDPKFNDVKTFQVGVLLDHL 577 (727)
T ss_dssp --------------------------------
T ss_pred CceEEEEEeccccCCCCCchHHHHHHHHHHHH
Confidence 56799999999886543344555555555443
No 269
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.41 E-value=0.041 Score=59.26 Aligned_cols=247 Identities=10% Similarity=0.087 Sum_probs=124.4
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceeeEeCCC
Q 043350 225 RLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSLSLKPE 302 (1133)
Q Consensus 225 ~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l~~~~~ 302 (1133)
..|+.+.. +.|+.+++++... ..+.....+......+.+++|++++. +++-..++.|..+++++.........
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~---~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~- 76 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTM---KKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ- 76 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCB---CGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT-
T ss_pred cEEEEEcC-CeEEEEEecCccc---ccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEEC-
Confidence 34555443 4788888876211 00000011111234568999999755 55666678999999865321111100
Q ss_pred CceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeC
Q 043350 303 EKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQ 382 (1133)
Q Consensus 303 ~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~s 382 (1133)
+. ..+....+-...+.+.+.+...+.|.++|+........+.........++++
T Consensus 77 ~~--------------------------~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd 130 (267)
T 1npe_A 77 DL--------------------------GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTD 130 (267)
T ss_dssp TC--------------------------CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE
T ss_pred CC--------------------------CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEe
Confidence 00 0111111111122333333556778888775332222222222446788999
Q ss_pred CCCCccccccceEEEEeeCC--CCccc--cccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eE-EEE
Q 043350 383 SVQDQPVEDEMKVKFVSSNK--KEKPH--GFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MI-WSG 456 (1133)
Q Consensus 383 p~g~~~~e~e~~v~lasgs~--Dg~i~--~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L-~sg 456 (1133)
|++.. + +++... .+.|. ..++..... ... ........+++++++ .| ++-
T Consensus 131 ~~~g~-------l-yv~~~~~~~~~I~~~~~dg~~~~~-----------~~~------~~~~~P~gia~d~~~~~lyv~d 185 (267)
T 1npe_A 131 PVRGN-------L-YWTDWNRDNPKIETSHMDGTNRRI-----------LAQ------DNLGLPNGLTFDAFSSQLCWVD 185 (267)
T ss_dssp TTTTE-------E-EEEECCSSSCEEEEEETTSCCCEE-----------EEC------TTCSCEEEEEEETTTTEEEEEE
T ss_pred eCCCE-------E-EEEECCCCCcEEEEEecCCCCcEE-----------EEE------CCCCCCcEEEEcCCCCEEEEEE
Confidence 96544 0 333322 23442 112211111 011 112356788899876 44 555
Q ss_pred ecCCeEEEEeCCCCeeEEEecCCcceeEEecCCCEEEEEe-cCCeEEEEeCC-CCcceeeeccc-cCeEEeeec
Q 043350 457 CTNGLLVQWDGNGNRVSDILHHQCAVQCFCTYGSRMYVGY-VSGYLQILDLD-GNLTASWIAHS-SPVLKLAVG 527 (1133)
Q Consensus 457 s~DG~I~vWd~~g~~l~~~~~h~~~V~~fs~dg~~Lasgs-~DG~I~vwd~~-g~~l~~~~~H~-~~V~~l~fs 527 (1133)
...+.|.+++.++.....+.........+..++..|+++. .++.|.++|.. ++.+..+.... .....+++.
T Consensus 186 ~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~ 259 (267)
T 1npe_A 186 AGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIA 259 (267)
T ss_dssp TTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEE
T ss_pred CCCCEEEEEecCCCceEEEecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeec
Confidence 5678999999977444333222222334566677777666 56899999987 56666654332 124445443
No 270
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.29 E-value=0.00029 Score=65.96 Aligned_cols=63 Identities=13% Similarity=0.276 Sum_probs=50.0
Q ss_pred EEecCeEEecccceEEEEEEECCccceEEEEEeecCCCcccCCCCCCccccCCCcCCCCceEEecCceEECCCCeEEEEE
Q 043350 958 IVSTESIILQNQDTCTLRITNKSAQEKAIFKIICDGQSTVKDDGDASDYRLRGSFGFPRWLEVTPAAGVIKPDSYIEVSV 1037 (1133)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~i~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~p~~~~~~p~~~~~~~~ 1037 (1133)
.++++.|.++...++.++|+|+|.+ ++.|++... . ..+..++.++|..|.|.||++.+|.+
T Consensus 16 ~ldFG~v~~g~~~~~~~~l~N~g~~-p~~~~~~~~--------~----------~~~~~~f~v~p~~g~i~pg~~~~i~V 76 (112)
T 2e6j_A 16 LLDIGKVFTGSAHCYEAILYNKGSI-DALFNMTPP--------T----------SALGACFVFSPKEGIIEPSGVQAIQI 76 (112)
T ss_dssp EEEEEEEESSCCEEEEEEEEECCSS-CEEEEECCC--------S----------SHHHHHCEEESSEEEECTTBCCEEEE
T ss_pred cEecEeEEECCEEEEEEEEEECCcc-eEEEEEecC--------C----------ccccCcEEEECCcCEECCCCEEEEEE
Confidence 4666666667778899999999999 999999631 0 01224699999999999999999999
Q ss_pred EE
Q 043350 1038 HH 1039 (1133)
Q Consensus 1038 ~~ 1039 (1133)
+.
T Consensus 77 ~f 78 (112)
T 2e6j_A 77 SF 78 (112)
T ss_dssp EE
T ss_pred EE
Confidence 84
No 271
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.16 E-value=0.0094 Score=68.05 Aligned_cols=230 Identities=9% Similarity=-0.013 Sum_probs=121.4
Q ss_pred CCCeEEEEEeCCCCEEEEEe----------CCCeEEEEeCCCCCCCCCCCcccccccccC-------CCCeEEEEEeeCC
Q 043350 212 TSPTMCLMVDCGNRLVWTGH----------KDGKIRSWKMDQTLDDANNPFKEGLSWQAH-------RGPVLAMIFSSQG 274 (1133)
Q Consensus 212 ~s~V~~la~spd~~~LaSgs----------~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH-------~~~V~sl~fsp~g 274 (1133)
..| .++++||++.|+.+. .+++|.+||+.+. +.+..+.-+ ...-..++|+|+|
T Consensus 66 ~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~--------~vv~~I~v~~~~~~~~g~~P~~ia~SpDG 135 (368)
T 1mda_H 66 FLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF--------LPIADIELPDAPRFSVGPRVHIIGNCASS 135 (368)
T ss_dssp TTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC--------CEEEEEEETTSCSCCBSCCTTSEEECTTS
T ss_pred CCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--------CEEEEEECCCccccccCCCcceEEEcCCC
Confidence 346 799999999999886 4789999999872 233333221 1234578999999
Q ss_pred c-EEEEeC--CCcEEE--EeCCCCceeeEe------CCCCc-eEEEEeecce--EEEccC----ceeeecc--ccCCCCC
Q 043350 275 D-LWSGGE--GGVIKI--WPWESIEKSLSL------KPEEK-HMAALLVERS--FIDLRA----QVTVNGA--CSISSTE 334 (1133)
Q Consensus 275 ~-L~Sgs~--DgtI~i--Wdl~~~~~~l~~------~~~~~-~l~s~~~d~s--~~d~~~----~~~v~~~--~~~~~~~ 334 (1133)
+ |+.+.. +..|.+ +|..+ ...+.. .+++. ..++...++. .+++.. ...+... ...+-+.
T Consensus 136 k~lyVan~~~~~~v~V~~iD~~t-v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~ 214 (368)
T 1mda_H 136 ACLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSS 214 (368)
T ss_dssp SCEEEEECSSSCEEEEEETTTEE-EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCS
T ss_pred CEEEEEccCCCCeEEEEEEchhh-ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCC
Confidence 9 777764 467888 99866 333321 11111 1112222222 344443 1111100 0001000
Q ss_pred eEEEEecCCceEEEecCCCceeEeecCCCc--eeEEEecC-------Ccc---eeEEEeCCCCCccccccceEEEEeeCC
Q 043350 335 IKCMLSDHARARVWCAQPLSFSLWDARSKE--LLKVFNIE-------GHI---ENRVDTQSVQDQPVEDEMKVKFVSSNK 402 (1133)
Q Consensus 335 ~~~l~S~d~~i~vwss~d~~I~lWD~~tg~--~l~~~~~h-------~~~---v~~l~~sp~g~~~~e~e~~v~lasgs~ 402 (1133)
.-. ++.++...+|.+. +.+.+.|+.++. .+..+... ... ...++++|++.. +..+..
T Consensus 215 ~P~-~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~---------lyV~~~ 283 (368)
T 1mda_H 215 QAA-QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG---------IMILTV 283 (368)
T ss_dssp CCE-EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE---------EEEEEE
T ss_pred Ccc-ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCE---------EEEEec
Confidence 001 2555555566666 888888886432 22222211 100 112678998876 554322
Q ss_pred -C-C-------ccccccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-e-EEEEe-cCCeEEEEeC-CC
Q 043350 403 -K-E-------KPHGFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-M-IWSGC-TNGLLVQWDG-NG 469 (1133)
Q Consensus 403 -D-g-------~i~~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~-L~sgs-~DG~I~vWd~-~g 469 (1133)
. + .+..++..... .+..+... ...+.+++++|| . +++.. .++.|.++|. ++
T Consensus 284 ~~~~~~~~~~~~~~ViD~~t~~-------vv~~i~vg---------~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~ 347 (368)
T 1mda_H 284 EHSRSCLAAAENTSSVTASVGQ-------TSGPISNG---------HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD 347 (368)
T ss_dssp ECSSCTTSCEEEEEEEESSSCC-------EEECCEEE---------EEECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred cccCcccccCCCEEEEECCCCe-------EEEEEECC---------CCcceEEECCCCCEEEEEccCCCCeEEEEECCCC
Confidence 1 1 11112211111 11112111 136678899998 4 55555 5999999999 66
Q ss_pred CeeEEEecCC
Q 043350 470 NRVSDILHHQ 479 (1133)
Q Consensus 470 ~~l~~~~~h~ 479 (1133)
+.+.++....
T Consensus 348 kvv~~I~vg~ 357 (368)
T 1mda_H 348 QDQSSVELDK 357 (368)
T ss_dssp EEEEECCCCS
T ss_pred cEEEEEECCC
Confidence 7777776543
No 272
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=97.13 E-value=0.00061 Score=73.99 Aligned_cols=27 Identities=11% Similarity=0.069 Sum_probs=20.8
Q ss_pred ceeEEEEEEEc---CeEEEEEecccccChH
Q 043350 697 KGGVGLRIRVY---DRTICFVNCHLAAHLE 723 (1133)
Q Consensus 697 KG~v~~r~~~~---~~~~~fvn~Hlaa~~~ 723 (1133)
.....+.|... +..|.+||+||.+...
T Consensus 111 R~p~~~~~~~~~~~g~~~~vi~~Hl~~~~~ 140 (260)
T 2a40_B 111 REPAVVKFSSHSTKVKEFAIVALHSAPSDA 140 (260)
T ss_dssp SCCEEEEEECTTSSSSEEEEEECCCCGGGH
T ss_pred eCCEEEEEEeCCCCCceEEEEEecCCCCCc
Confidence 56677778765 5689999999997643
No 273
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.05 E-value=0.005 Score=73.68 Aligned_cols=144 Identities=12% Similarity=0.102 Sum_probs=86.8
Q ss_pred CceeEeecCC--Cce-eEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccce-eeccCCceEEEE
Q 043350 353 LSFSLWDARS--KEL-LKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNA-IMGAADAVRRVA 428 (1133)
Q Consensus 353 ~~I~lWD~~t--g~~-l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~-~~~~~~~V~~v~ 428 (1133)
+.|.+.|.++ ++. +..+... ....++.++|||++ + ++++..+.++..++...... +.+.-..-..+.
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~-------v-~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~ 324 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKH-------L-CVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV 324 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSE-------E-EEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEE
T ss_pred CcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCE-------E-EEeCCCCCeEEEEECcccccccccccCcccceE
Confidence 4588999988 555 5566542 34568999999997 1 44555566665333221110 000000000000
Q ss_pred EecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeC-C----------CCeeEEEecCCcc--eeE-----EecCC
Q 043350 429 TRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDG-N----------GNRVSDILHHQCA--VQC-----FCTYG 489 (1133)
Q Consensus 429 ~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~-~----------g~~l~~~~~h~~~--V~~-----fs~dg 489 (1133)
.. ..-......++|+++| ...+...|+.|.+||+ . .+.+.++..|..+ ... +++||
T Consensus 325 ~~-----v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DG 399 (595)
T 1fwx_A 325 AE-----PELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATN 399 (595)
T ss_dssp EC-----CBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCS
T ss_pred EE-----cCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCC
Confidence 01 1122346778899999 5556778999999998 3 3567777777554 222 68999
Q ss_pred CEEEEEec---CCe----------EEEEeCCCCc
Q 043350 490 SRMYVGYV---SGY----------LQILDLDGNL 510 (1133)
Q Consensus 490 ~~Lasgs~---DG~----------I~vwd~~g~~ 510 (1133)
++|+++.. |+. -.++|+++..
T Consensus 400 k~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 400 DWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp SEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred CEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 99999873 443 2899998643
No 274
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.02 E-value=0.18 Score=54.19 Aligned_cols=210 Identities=10% Similarity=-0.030 Sum_probs=120.2
Q ss_pred cccCCCCCE-EEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCC-CCeEE--ecCCcEEEeeCC
Q 043350 109 KPFQPMVEF-IGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTD-TQLWA--GQECGVRFWNLE 183 (1133)
Q Consensus 109 ~~~~p~g~~-lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~d-g~lla--s~Dg~VrvWdl~ 183 (1133)
+.++|++.. +++-...+.|..++.. +......+..... ....++ .++ +.+++ ...+.|.+++++
T Consensus 41 i~~d~~~~~ly~~d~~~~~I~~~~~~----g~~~~~~~~~~~~-------~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~ 109 (267)
T 1npe_A 41 LAFDCVDKVVYWTDISEPSIGRASLH----GGEPTTIIRQDLG-------SPEGIALDHLGRTIFWTDSQLDRIEVAKMD 109 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEESS----SCCCEEEECTTCC-------CEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEecCCCEEEEEECCCCEEEEEecC----CCCcEEEEECCCC-------CccEEEEEecCCeEEEEECCCCEEEEEEcC
Confidence 556776554 4555667888888887 4431222221112 456777 664 55555 456789999887
Q ss_pred CCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeC---CCeEEEEeCCCCCCCCCCCcccccccc-
Q 043350 184 DSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHK---DGKIRSWKMDQTLDDANNPFKEGLSWQ- 259 (1133)
Q Consensus 184 ~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~---Dg~V~vWd~~~~~~~~~~~~~~~~~l~- 259 (1133)
+.... . ...........++++|++..|+.+.. .+.|..+++++. ....+.
T Consensus 110 g~~~~----------------~-~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~---------~~~~~~~ 163 (267)
T 1npe_A 110 GTQRR----------------V-LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT---------NRRILAQ 163 (267)
T ss_dssp SCSCE----------------E-EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC---------CCEEEEC
T ss_pred CCCEE----------------E-EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC---------CcEEEEE
Confidence 53211 0 11111234588999996665555443 368888888761 111111
Q ss_pred cCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEE
Q 043350 260 AHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKC 337 (1133)
Q Consensus 260 gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~ 337 (1133)
..-..-..+++++++. .++-...+.|.++++....... .+.. ...+...
T Consensus 164 ~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~-----------------~~~~-----------~~~P~gi- 214 (267)
T 1npe_A 164 DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK-----------------VLEG-----------LQYPFAV- 214 (267)
T ss_dssp TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEE-----------------EEEC-----------CCSEEEE-
T ss_pred CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEE-----------------EecC-----------CCCceEE-
Confidence 2224568999999866 5566667889999886421100 0000 0112221
Q ss_pred EEecCCceEEEecCCCceeEeecCCCceeEEEecCCc-ceeEEEeCCCC
Q 043350 338 MLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGH-IENRVDTQSVQ 385 (1133)
Q Consensus 338 l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~-~v~~l~~sp~g 385 (1133)
+..++.+.+.+...+.|..+|..+++.+..+..... ....+++.|++
T Consensus 215 -~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 215 -TSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp -EEETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred -EEeCCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence 112333434345678899999999999888865432 35677777765
No 275
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.87 E-value=0.08 Score=65.55 Aligned_cols=62 Identities=19% Similarity=0.295 Sum_probs=46.6
Q ss_pred ecCCeEEEEeC-CCCeeEEEecCCccee-EEecCCCEEEEEecCCeEEEEeCC-CCcceeeeccc
Q 043350 457 CTNGLLVQWDG-NGNRVSDILHHQCAVQ-CFCTYGSRMYVGYVSGYLQILDLD-GNLTASWIAHS 518 (1133)
Q Consensus 457 s~DG~I~vWd~-~g~~l~~~~~h~~~V~-~fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~H~ 518 (1133)
..+|.|..||. +|+.+.++..+..... .+...+.+|++|+.||.|++||.+ |+++..+....
T Consensus 435 ~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~ 499 (668)
T 1kv9_A 435 VVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQS 499 (668)
T ss_dssp GCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCC
Confidence 34589999998 7787777765433222 277788999999999999999987 67776666543
No 276
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.76 E-value=1.9 Score=53.79 Aligned_cols=103 Identities=12% Similarity=0.210 Sum_probs=63.9
Q ss_pred CCEEEEEECCCCeEEEEecCCeEEEEeCC-C--CeeEEEec-------CCcceeEEecCC-CEEEEEecCCeEEEEeCCC
Q 043350 440 KRTEAMVLTADGMIWSGCTNGLLVQWDGN-G--NRVSDILH-------HQCAVQCFCTYG-SRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 440 ~~V~sl~~spdg~L~sgs~DG~I~vWd~~-g--~~l~~~~~-------h~~~V~~fs~dg-~~Lasgs~DG~I~vwd~~g 508 (1133)
..|.++....+|.|+.|..+| +..++.. + ..+..+.. ....|.++..|. ..|+.|+ ++-|..||..+
T Consensus 324 ~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~ 401 (758)
T 3ott_A 324 NQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYAT 401 (758)
T ss_dssp CBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTT
T ss_pred ceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCC
Confidence 458888888888888887665 5556553 2 12222221 123577865543 3577787 56799999876
Q ss_pred Ccceeeec-------cccCeEEeeec-ccceeeecccCCeeecc
Q 043350 509 NLTASWIA-------HSSPVLKLAVG-VDHIYSLAAHGGIRGWT 544 (1133)
Q Consensus 509 ~~l~~~~~-------H~~~V~~l~fs-~~~L~S~s~Dg~I~lW~ 544 (1133)
.....+.. ....|.++..+ ...|..++..+.|..++
T Consensus 402 ~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~ 445 (758)
T 3ott_A 402 RQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVD 445 (758)
T ss_dssp TEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEE
T ss_pred CcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEc
Confidence 44333321 12457788776 56677777667777776
No 277
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.74 E-value=0.091 Score=65.06 Aligned_cols=53 Identities=15% Similarity=0.087 Sum_probs=35.6
Q ss_pred CCeEEEEeCC-CCcceeeeccccCeE--EeeecccceeeecccCCeeeccccCCCCc
Q 043350 498 SGYLQILDLD-GNLTASWIAHSSPVL--KLAVGVDHIYSLAAHGGIRGWTFTSPSPL 551 (1133)
Q Consensus 498 DG~I~vwd~~-g~~l~~~~~H~~~V~--~l~fs~~~L~S~s~Dg~I~lW~l~s~~~l 551 (1133)
+|.|..||+. |+.+-....+ .++. .+...+..|+.++.||.|+.||..+...+
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence 4889999986 4443333222 2333 34444889999999999999998765443
No 278
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.71 E-value=0.76 Score=51.71 Aligned_cols=250 Identities=7% Similarity=0.039 Sum_probs=123.4
Q ss_pred CeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCC
Q 043350 214 PTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWE 291 (1133)
Q Consensus 214 ~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~ 291 (1133)
...|.+..++. .|+.+. ...|+..++++ .....+........+|+|++.+. +++-...+.|..++++
T Consensus 35 ~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g---------~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~ 103 (349)
T 3v64_C 35 RRSCKALGPEP-VLLFAN-RIDIRQVLPHR---------SEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLN 103 (349)
T ss_dssp SSCEEESSSCC-EEEEEC-BSCEEEECTTS---------CCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCcccccccCc-eeEeec-ccceEEEeCCC---------CeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecC
Confidence 34566666644 333333 34577777765 22222222234578999997655 5566677888888887
Q ss_pred CCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEec
Q 043350 292 SIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNI 371 (1133)
Q Consensus 292 ~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~ 371 (1133)
........... ...+....+-...+.+.+.....+.|.+.++........+..
T Consensus 104 g~~~~~~~~~~---------------------------~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~ 156 (349)
T 3v64_C 104 GSNVEEVVSTG---------------------------LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ 156 (349)
T ss_dssp SCSCEEEECSS---------------------------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECT
T ss_pred CCCceEEEeCC---------------------------CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeC
Confidence 53211111000 011122222112233333334556777777653332222333
Q ss_pred CCcceeEEEeCCCCCccccccceEEEEeeCCC-Cccc--cccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEEC
Q 043350 372 EGHIENRVDTQSVQDQPVEDEMKVKFVSSNKK-EKPH--GFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLT 448 (1133)
Q Consensus 372 h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~D-g~i~--~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~s 448 (1133)
.......+++.|.+.. + +++-... +.|. ..++.....+ ....-.....++++
T Consensus 157 ~l~~P~~iavdp~~g~-------l-y~td~~~~~~I~r~~~dG~~~~~~-----------------~~~~~~~PnGla~d 211 (349)
T 3v64_C 157 SLEKPRAIALHPMEGT-------I-YWTDWGNTPRIEASSMDGSGRRII-----------------ADTHLFWPNGLTID 211 (349)
T ss_dssp TCSCEEEEEEETTTTE-------E-EEEECSSSCEEEEEETTSCSCEES-----------------CCSSCSCEEEEEEE
T ss_pred CCCCcceEEEecCcCe-------E-EEeccCCCCEEEEEeCCCCCcEEE-----------------EECCCCCcceEEEe
Confidence 3345678888885544 0 3333333 3443 1121111111 01122346778888
Q ss_pred CCC--eEEEEecCCeEEEEeCCCCeeEEEec-CCcceeEEecCCCEE-EEEecCCeEEEEe-CCCCcceeeeccccCeEE
Q 043350 449 ADG--MIWSGCTNGLLVQWDGNGNRVSDILH-HQCAVQCFCTYGSRM-YVGYVSGYLQILD-LDGNLTASWIAHSSPVLK 523 (1133)
Q Consensus 449 pdg--~L~sgs~DG~I~vWd~~g~~l~~~~~-h~~~V~~fs~dg~~L-asgs~DG~I~vwd-~~g~~l~~~~~H~~~V~~ 523 (1133)
+++ +.++-...+.|..++.+|.....+.. .......+..++..| ++-...+.|..++ ..|+....+........+
T Consensus 212 ~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~g 291 (349)
T 3v64_C 212 YAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMD 291 (349)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCC
T ss_pred CCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEECCEEEEecCCCCeEEEEEccCCCccEEeccCCCCCce
Confidence 755 44555567889999998754444332 222223322234444 4444678888888 456655555433333344
Q ss_pred eee
Q 043350 524 LAV 526 (1133)
Q Consensus 524 l~f 526 (1133)
+++
T Consensus 292 i~v 294 (349)
T 3v64_C 292 IHT 294 (349)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 279
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.66 E-value=0.15 Score=56.11 Aligned_cols=70 Identities=20% Similarity=0.188 Sum_probs=46.1
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeC-CC-cEEEEe
Q 043350 213 SPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGE-GG-VIKIWP 289 (1133)
Q Consensus 213 s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~-Dg-tI~iWd 289 (1133)
.-...++|+++++++++-..++.|..|+.++ .....+ .-.....+|++.++|+ +++... ++ .|..++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g---------~~~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d 101 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG---------NQQIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLV 101 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC---------CEEEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC---------ceEEEE-eCCCCceeEEEcCCCcEEEEeccCCcceEEEEc
Confidence 3467899999999777777889999998875 221111 1234688999999999 444333 22 355555
Q ss_pred CCC
Q 043350 290 WES 292 (1133)
Q Consensus 290 l~~ 292 (1133)
..+
T Consensus 102 ~~~ 104 (306)
T 2p4o_A 102 KSD 104 (306)
T ss_dssp CTT
T ss_pred CCC
Confidence 444
No 280
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.65 E-value=0.62 Score=53.23 Aligned_cols=249 Identities=7% Similarity=0.028 Sum_probs=124.5
Q ss_pred EEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCC
Q 043350 216 MCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESI 293 (1133)
Q Consensus 216 ~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~ 293 (1133)
.|.+..+.. +|+.+. ...|+..++.+ .....+........+|+|.+.+. +++-...+.|..++++..
T Consensus 80 ~C~~~~~~~-~l~~~~-~~~I~~i~~~~---------~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~ 148 (386)
T 3v65_B 80 SCKALGPEP-VLLFAN-RIDIRQVLPHR---------SEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGS 148 (386)
T ss_dssp CEEECSSCC-EEEEEC-BSCEEEECTTS---------CCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred eECCccccc-eeEeec-CccceeeccCC---------CcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence 455555533 444333 35688888876 22222222334578999997655 566667788988888753
Q ss_pred ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCC
Q 043350 294 EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEG 373 (1133)
Q Consensus 294 ~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~ 373 (1133)
......... ...+..+.+-...+.+.+.....+.|.+.++........+....
T Consensus 149 ~~~~~~~~~---------------------------~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l 201 (386)
T 3v65_B 149 NVEEVVSTG---------------------------LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL 201 (386)
T ss_dssp CEEEEECSS---------------------------CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSC
T ss_pred CcEEEEeCC---------------------------CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCC
Confidence 211111000 01122222211223333333455667777765333223333333
Q ss_pred cceeEEEeCCCCCccccccceEEEEeeCCC-Cccc--cccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCC
Q 043350 374 HIENRVDTQSVQDQPVEDEMKVKFVSSNKK-EKPH--GFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTAD 450 (1133)
Q Consensus 374 ~~v~~l~~sp~g~~~~e~e~~v~lasgs~D-g~i~--~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spd 450 (1133)
.....+++.|.+.. + +++-... +.|. ..++..... .. ...-.....|+++++
T Consensus 202 ~~P~giavdp~~g~-------l-y~td~~~~~~I~r~~~dG~~~~~-----------~~------~~~~~~PnGlavd~~ 256 (386)
T 3v65_B 202 EKPRAIALHPMEGT-------I-YWTDWGNTPRIEASSMDGSGRRI-----------IA------DTHLFWPNGLTIDYA 256 (386)
T ss_dssp SCEEEEEEETTTTE-------E-EEEECSSSCEEEEEETTSCSCEE-----------EE------CSSCSCEEEEEEEGG
T ss_pred CCCcEEEEEcCCCe-------E-EEeccCCCCEEEEEeCCCCCcEE-----------EE------ECCCCCeeeEEEeCC
Confidence 45678888886554 0 3332222 3333 111111111 01 112234677888876
Q ss_pred C--eEEEEecCCeEEEEeCCCCeeEEEec-CCcceeEEecCC-CEEEEEecCCeEEEEe-CCCCcceeeeccccCeEEee
Q 043350 451 G--MIWSGCTNGLLVQWDGNGNRVSDILH-HQCAVQCFCTYG-SRMYVGYVSGYLQILD-LDGNLTASWIAHSSPVLKLA 525 (1133)
Q Consensus 451 g--~L~sgs~DG~I~vWd~~g~~l~~~~~-h~~~V~~fs~dg-~~Lasgs~DG~I~vwd-~~g~~l~~~~~H~~~V~~l~ 525 (1133)
+ +.++-...+.|..++.+|.....+.. .......+..++ ...++-...+.|..++ ..|+.+..+........+|+
T Consensus 257 ~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~ 336 (386)
T 3v65_B 257 GRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIH 336 (386)
T ss_dssp GTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEE
T ss_pred CCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEE
Confidence 5 44555567889999998754444432 222223322233 4445555778899888 56666655554333444454
Q ss_pred ec
Q 043350 526 VG 527 (1133)
Q Consensus 526 fs 527 (1133)
+.
T Consensus 337 v~ 338 (386)
T 3v65_B 337 TL 338 (386)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 281
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=96.53 E-value=0.0015 Score=70.15 Aligned_cols=37 Identities=27% Similarity=0.304 Sum_probs=28.4
Q ss_pred ceEEEEEEcCCCCCCchhhhhhhcCCCCCccEEEEeeeecc
Q 043350 573 RILVGTWNVGQGRASHESLLSWLGSVSSDVGIVAVGLQEVE 613 (1133)
Q Consensus 573 rI~v~TWNv~~~~~~~~~l~~wl~~~~~~~di~vig~QE~~ 613 (1133)
.+.+.|||||+.+...+.|.+|+.. .+||| |+|||..
T Consensus 7 ~mki~s~Nvn~~r~~~~~l~~~l~~--~~~DI--l~LQEt~ 43 (240)
T 2ei9_A 7 RLRIGQINLGGAEDATRELPSIARD--LGLDI--VLVQEQY 43 (240)
T ss_dssp EEEEEEEECTTCHHHHHTHHHHHHH--HTCSE--EEEESCC
T ss_pred cceEEEEecCccHHHHHHHHHHHHH--cCCCE--EEeecce
Confidence 3678899999887666668899974 45776 5689973
No 282
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.50 E-value=0.5 Score=57.17 Aligned_cols=59 Identities=20% Similarity=0.235 Sum_probs=43.1
Q ss_pred cCCeEEEEeC-CCCeeEEEecCCcceeE-EecCCCEEEEEecCCeEEEEeCC-CCcceeeec
Q 043350 458 TNGLLVQWDG-NGNRVSDILHHQCAVQC-FCTYGSRMYVGYVSGYLQILDLD-GNLTASWIA 516 (1133)
Q Consensus 458 ~DG~I~vWd~-~g~~l~~~~~h~~~V~~-fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~ 516 (1133)
.+|.|..||. +|+.+.++......... +...+..+++++.||.|++||.+ |+++-++..
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 4688999998 67888777653222222 56667788889999999999986 677666654
No 283
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.48 E-value=3.9 Score=53.49 Aligned_cols=91 Identities=10% Similarity=0.137 Sum_probs=56.7
Q ss_pred eEEEEe----------cCCeEEEEeCCCCeeEEEe--cCCcceeEEecCCCEEEEEecCCeEEEEeCCCC-cceeee-cc
Q 043350 452 MIWSGC----------TNGLLVQWDGNGNRVSDIL--HHQCAVQCFCTYGSRMYVGYVSGYLQILDLDGN-LTASWI-AH 517 (1133)
Q Consensus 452 ~L~sgs----------~DG~I~vWd~~g~~l~~~~--~h~~~V~~fs~dg~~Lasgs~DG~I~vwd~~g~-~l~~~~-~H 517 (1133)
+|+.|. ..|.|.+|++.+..+..+. ...++|+++++.+.+|++|- ..+|++|++..+ .+. .. .+
T Consensus 846 ~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~g~Lla~i-g~~l~vy~l~~~~~L~-~~~~~ 923 (1158)
T 3ei3_A 846 YFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASI-NSTVRLYEWTTEKELR-TECNH 923 (1158)
T ss_dssp EEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEETTEEEEEE-TTEEEEEEECTTSCEE-EEEEE
T ss_pred EEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeCCEEEEEc-CCEEEEEECCCCceEE-EEeec
Confidence 777775 3588999998443443332 24678888777666777665 578999999753 333 21 12
Q ss_pred ccCeE--EeeecccceeeecccCCeeecc
Q 043350 518 SSPVL--KLAVGVDHIYSLAAHGGIRGWT 544 (1133)
Q Consensus 518 ~~~V~--~l~fs~~~L~S~s~Dg~I~lW~ 544 (1133)
-..|. .+...+++++.+..-..|.+..
T Consensus 924 ~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~ 952 (1158)
T 3ei3_A 924 YNNIMALYLKTKGDFILVGDLMRSVLLLA 952 (1158)
T ss_dssp CCCSCEEEEEEETTEEEEEESSBCEEEEE
T ss_pred cccEEEEEEeccCCEEEEEEhhheEEEEE
Confidence 22233 4444477888887776666654
No 284
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.47 E-value=1.7 Score=54.31 Aligned_cols=186 Identities=12% Similarity=0.173 Sum_probs=96.5
Q ss_pred eEEEEE-eCCCCeEEecCCcEEEeeCCCC-CCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCe
Q 043350 158 FLRNIA-CTDTQLWAGQECGVRFWNLEDS-YEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGK 235 (1133)
Q Consensus 158 ~V~~v~-s~dg~llas~Dg~VrvWdl~~~-~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~ 235 (1133)
.|.++. ..+|.+|++.++.+.+++..+. .... .+.. ..........|.++..+.++. |+.|+..|
T Consensus 233 ~i~~i~~d~~g~lWigT~~Gl~~~~~~~~~~~~~-~~~~----------~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G- 299 (758)
T 3ott_A 233 SIKSLALDGNGDLLAGTDNGLYVYHNDTTPLQHI-IHDS----------RNIQSLTNNIIWNIFADQEHN-IWLGTDYG- 299 (758)
T ss_dssp EEEEEEECTTCCEEEEETTEEEEECCTTSCCEEE-CCCT----------TCTTSCSCSCEEEEEECTTCC-EEEEESSS-
T ss_pred eEEEEEEcCCCCEEEEeCCceeEEecCCCcEEEE-EcCC----------CCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-
Confidence 577777 6789999965777888887652 1111 0100 000112234689998887665 57777767
Q ss_pred EEEEeCCCCCCCCCCCccccc--ccc--cCCCCeEEEEEeeCCcEEEEeCCCcEEEEeCCCC-ceeeE-eCCCCceEEEE
Q 043350 236 IRSWKMDQTLDDANNPFKEGL--SWQ--AHRGPVLAMIFSSQGDLWSGGEGGVIKIWPWESI-EKSLS-LKPEEKHMAAL 309 (1133)
Q Consensus 236 V~vWd~~~~~~~~~~~~~~~~--~l~--gH~~~V~sl~fsp~g~L~Sgs~DgtI~iWdl~~~-~~~l~-~~~~~~~l~s~ 309 (1133)
+.+..... .++... ... .....|.++.-..+|.|+.|+.+| +..++..+. ...+. +......
T Consensus 300 l~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~---- 367 (758)
T 3ott_A 300 ISLSRYNS-------ALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGDKT---- 367 (758)
T ss_dssp EEEECCCC--------CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTTCSS----
T ss_pred ccccccCC-------ceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccCCcC----
Confidence 54443321 111110 000 123468888887777888888766 445554431 11110 1000000
Q ss_pred eecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEe-c-----CCcceeEEEeCC
Q 043350 310 LVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFN-I-----EGHIENRVDTQS 383 (1133)
Q Consensus 310 ~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~-~-----h~~~v~~l~~sp 383 (1133)
.. ........+..|..-.+|-+.++.+..+|..+++...... . ....|.++....
T Consensus 368 ------------------~~-l~~~~v~~i~~d~~g~lWigt~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~ 428 (758)
T 3ott_A 368 ------------------YP-LSHNRIRHIYEDKEQQLWIATDGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT 428 (758)
T ss_dssp ------------------SC-CSCSCEEEEEECTTSCEEEEETTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT
T ss_pred ------------------CC-CCCCceEEEEECCCCCEEEEeCCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC
Confidence 00 0112233333455566777777889999988776543221 1 123466666666
Q ss_pred CCCc
Q 043350 384 VQDQ 387 (1133)
Q Consensus 384 ~g~~ 387 (1133)
++.+
T Consensus 429 ~g~l 432 (758)
T 3ott_A 429 AGQL 432 (758)
T ss_dssp TSEE
T ss_pred CCCE
Confidence 5543
No 285
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.44 E-value=0.16 Score=62.61 Aligned_cols=70 Identities=11% Similarity=0.166 Sum_probs=45.9
Q ss_pred EEEEeC-CCCEEEEEeCCC-----------eEEEEeCCCCCCCCCCCcccccccc-cCCCCeEEEEEeeCCc-EEEEeC-
Q 043350 217 CLMVDC-GNRLVWTGHKDG-----------KIRSWKMDQTLDDANNPFKEGLSWQ-AHRGPVLAMIFSSQGD-LWSGGE- 281 (1133)
Q Consensus 217 ~la~sp-d~~~LaSgs~Dg-----------~V~vWd~~~~~~~~~~~~~~~~~l~-gH~~~V~sl~fsp~g~-L~Sgs~- 281 (1133)
++++.+ ++++++.|+.+. .+.+||...... ..+..+. .+.....++++..+|+ ++.|+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w------~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~ 263 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV------SDRTVTVTKHDMFCPGISMDGNGQIVVTGGND 263 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB------CCCEEEECSCCCSSCEEEECTTSCEEEECSSS
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcE------EeCcccCCCCCCccccccCCCCCCEEEeCCCC
Confidence 456666 888999988653 578898876322 3333332 2333445678888899 888874
Q ss_pred CCcEEEEeCCC
Q 043350 282 GGVIKIWPWES 292 (1133)
Q Consensus 282 DgtI~iWdl~~ 292 (1133)
+..+.+||..+
T Consensus 264 ~~~v~~yd~~t 274 (656)
T 1k3i_A 264 AKKTSLYDSSS 274 (656)
T ss_dssp TTCEEEEEGGG
T ss_pred CCceEEecCcC
Confidence 45788888764
No 286
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=96.44 E-value=0.28 Score=56.70 Aligned_cols=131 Identities=11% Similarity=0.117 Sum_probs=74.5
Q ss_pred CCceeEeecCCCceeEEEecCC--cceeEEEe--CCCCCccccccceEEEEeeC------CCCccccccccccceeeccC
Q 043350 352 PLSFSLWDARSKELLKVFNIEG--HIENRVDT--QSVQDQPVEDEMKVKFVSSN------KKEKPHGFLQRSRNAIMGAA 421 (1133)
Q Consensus 352 d~~I~lWD~~tg~~l~~~~~h~--~~v~~l~~--sp~g~~~~e~e~~v~lasgs------~Dg~i~~~~~~~~~~~~~~~ 421 (1133)
...|.+||+.+++.++++.... .....+.| +|++++ +..++ .+++|..+.... ..+.
T Consensus 227 ~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~---------aYV~~e~~~~~Lss~V~v~~~d~-g~~~--- 293 (462)
T 2ece_A 227 GNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLM---------GFINMVVSLKDLSSSIWLWFYED-GKWN--- 293 (462)
T ss_dssp CCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCE---------EEEEEEEETTTCCEEEEEEEEET-TEEE---
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCE---------EEEEEeeeccCCCceEEEEEecC-Ccee---
Confidence 6889999999999888887642 22334444 999987 44444 444553111100 0010
Q ss_pred CceEEEEEec---CCc-------ccCCCCCEEEEEECCCC-eEEEEe-cCCeEEEEeCC-C---CeeEEEecCC------
Q 043350 422 DAVRRVATRG---AGA-------FVDDTKRTEAMVLTADG-MIWSGC-TNGLLVQWDGN-G---NRVSDILHHQ------ 479 (1133)
Q Consensus 422 ~~V~~v~~~p---~g~-------~~~h~~~V~sl~~spdg-~L~sgs-~DG~I~vWd~~-g---~~l~~~~~h~------ 479 (1133)
....+...+ .+. +.+.......+.+|+|| +|+++. ..+.|.+||+. . +.+..+....
T Consensus 294 -~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~ 372 (462)
T 2ece_A 294 -AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRAD 372 (462)
T ss_dssp -EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBC
T ss_pred -EEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccc
Confidence 011111110 000 11112356788899999 666555 47899999983 2 4454544321
Q ss_pred ----------cceeEEecCCCEEEEEe
Q 043350 480 ----------CAVQCFCTYGSRMYVGY 496 (1133)
Q Consensus 480 ----------~~V~~fs~dg~~Lasgs 496 (1133)
-.-..++|||++|+++.
T Consensus 373 ~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 373 HPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred ccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 12223999999999988
No 287
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.43 E-value=0.59 Score=56.65 Aligned_cols=86 Identities=20% Similarity=0.236 Sum_probs=55.3
Q ss_pred cCCeEEEEeC-CCCeeEEEecCCcceeE-EecCCCEEEEEecCCeEEEEeCC-CCcceeeeccccCeE-Eeee--ccc-c
Q 043350 458 TNGLLVQWDG-NGNRVSDILHHQCAVQC-FCTYGSRMYVGYVSGYLQILDLD-GNLTASWIAHSSPVL-KLAV--GVD-H 530 (1133)
Q Consensus 458 ~DG~I~vWd~-~g~~l~~~~~h~~~V~~-fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~H~~~V~-~l~f--s~~-~ 530 (1133)
.+|.|..||+ +|+.+.+.......... +...+.++++|+.||.++.||.+ |+++-+++...+.+. -+.+ +++ |
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY 543 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence 4689999999 77888777654322222 56678889999999999999986 677766665433221 1443 344 4
Q ss_pred eeeecc-cCCeeec
Q 043350 531 IYSLAA-HGGIRGW 543 (1133)
Q Consensus 531 L~S~s~-Dg~I~lW 543 (1133)
++..+. .|.+-+|
T Consensus 544 v~~~~G~gg~~~~~ 557 (582)
T 1flg_A 544 LGVTVGYGGAVPLW 557 (582)
T ss_dssp EEEEECCCSHHHHH
T ss_pred EEEEccCCCccccc
Confidence 554433 3445555
No 288
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.41 E-value=0.15 Score=54.64 Aligned_cols=174 Identities=9% Similarity=0.073 Sum_probs=96.3
Q ss_pred eEEEEE-eCCCCeEE--ecCC--cEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEe-
Q 043350 158 FLRNIA-CTDTQLWA--GQEC--GVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGH- 231 (1133)
Q Consensus 158 ~V~~v~-s~dg~lla--s~Dg--~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs- 231 (1133)
+...+. + ++.++. +.+| .|+++|+++..-.. . .... .........++++.|+...
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~---------------~--~~l~-~~~FgeGit~~g~~ly~ltw 104 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQ---------------Q--IELG-KRYFGEGISDWKDKIVGLTW 104 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEE---------------E--EECC-TTCCEEEEEEETTEEEEEES
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEE---------------E--EecC-CccceeEEEEeCCEEEEEEe
Confidence 677788 6 677777 5555 89999998732110 0 0011 1122222222345555554
Q ss_pred CCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCc--eeeEeCCCCceEEE
Q 043350 232 KDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIE--KSLSLKPEEKHMAA 308 (1133)
Q Consensus 232 ~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~--~~l~~~~~~~~l~s 308 (1133)
.++.+.++|..+ ++.+.++..-. ....++++|+ |+.+..++.|.++|..+.. ..+.....+..
T Consensus 105 ~~~~v~v~D~~t--------~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~--- 170 (262)
T 3nol_A 105 KNGLGFVWNIRN--------LRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEE--- 170 (262)
T ss_dssp SSSEEEEEETTT--------CCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEE---
T ss_pred eCCEEEEEECcc--------CcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcc---
Confidence 578999999986 23333433211 2233446777 7766667889999987631 12111111110
Q ss_pred EeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecC------------Ccce
Q 043350 309 LLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIE------------GHIE 376 (1133)
Q Consensus 309 ~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h------------~~~v 376 (1133)
-....-+...++.+.+-...+..|.+.|..+|+.+..+... ....
T Consensus 171 -----------------------~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vl 227 (262)
T 3nol_A 171 -----------------------LPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVL 227 (262)
T ss_dssp -----------------------CCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCE
T ss_pred -----------------------ccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCce
Confidence 00000011113333322245789999999999999988653 1245
Q ss_pred eEEEeCCCCCc
Q 043350 377 NRVDTQSVQDQ 387 (1133)
Q Consensus 377 ~~l~~sp~g~~ 387 (1133)
+.++++|+.+.
T Consensus 228 NGIA~dp~~~~ 238 (262)
T 3nol_A 228 NGIAWDKEHHR 238 (262)
T ss_dssp EEEEEETTTTE
T ss_pred EEEEEcCCCCE
Confidence 79999998765
No 289
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.40 E-value=0.3 Score=52.76 Aligned_cols=194 Identities=10% Similarity=0.067 Sum_probs=112.6
Q ss_pred CeEEEEEeeCCc-EEEEeC--CCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEe
Q 043350 264 PVLAMIFSSQGD-LWSGGE--GGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLS 340 (1133)
Q Consensus 264 ~V~sl~fsp~g~-L~Sgs~--DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S 340 (1133)
....|+|+++|. .++.+. ++.|.+.|+.++...-....... +.+....+ .
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~--------------------------~fgeGi~~-~ 74 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS--------------------------YFGEGLTL-L 74 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT--------------------------CCEEEEEE-E
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC--------------------------cceEEEEE-e
Confidence 357999999877 555443 68999999987422211111000 11111111 1
Q ss_pred cCCceEEEecCCCceeEeecCCCceeEEEecC-CcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeec
Q 043350 341 DHARARVWCAQPLSFSLWDARSKELLKVFNIE-GHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMG 419 (1133)
Q Consensus 341 ~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h-~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~ 419 (1133)
++++.+.+..++.+.++|..+.+.+.++... .. ...+++++.. ++.+..++++..++......
T Consensus 75 -g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~---g~glt~Dg~~---------l~vs~gs~~l~viD~~t~~v--- 138 (266)
T 2iwa_A 75 -NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD---GWGLATDGKI---------LYGSDGTSILYEIDPHTFKL--- 138 (266)
T ss_dssp -TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS---CCEEEECSSS---------EEEECSSSEEEEECTTTCCE---
T ss_pred -CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC---eEEEEECCCE---------EEEECCCCeEEEEECCCCcE---
Confidence 2333343456899999999999999998654 22 2345567776 66665666665444332221
Q ss_pred cCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEe-cCCeEEEEeC-CCCeeEEEecCC-------------cceeE
Q 043350 420 AADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGC-TNGLLVQWDG-NGNRVSDILHHQ-------------CAVQC 484 (1133)
Q Consensus 420 ~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs-~DG~I~vWd~-~g~~l~~~~~h~-------------~~V~~ 484 (1133)
+..+.....+ ..-...+.+.+. +|.+++.. .++.|.+-|. +++.+..+.... ...+.
T Consensus 139 ----~~~I~Vg~~~---~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nG 210 (266)
T 2iwa_A 139 ----IKKHNVKYNG---HRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNG 210 (266)
T ss_dssp ----EEEEECEETT---EECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEE
T ss_pred ----EEEEEECCCC---cccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEE
Confidence 2222221000 011235566666 67555444 5789999999 778888876421 12233
Q ss_pred --EecCCCEEEEEe-cCCeEEEEeCCC
Q 043350 485 --FCTYGSRMYVGY-VSGYLQILDLDG 508 (1133)
Q Consensus 485 --fs~dg~~Lasgs-~DG~I~vwd~~g 508 (1133)
++++++.|++++ ..++|.+.++..
T Consensus 211 Ia~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 211 IAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 899987665544 788898888753
No 290
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.33 E-value=1.8 Score=47.98 Aligned_cols=103 Identities=19% Similarity=0.237 Sum_probs=62.8
Q ss_pred CCEEEEEECCCCeEEEEecCCeEEEEeCC-CCeeEEEec----CCcceeE--EecCCCEEEEEecCCeEEEEeCC-CCcc
Q 043350 440 KRTEAMVLTADGMIWSGCTNGLLVQWDGN-GNRVSDILH----HQCAVQC--FCTYGSRMYVGYVSGYLQILDLD-GNLT 511 (1133)
Q Consensus 440 ~~V~sl~~spdg~L~sgs~DG~I~vWd~~-g~~l~~~~~----h~~~V~~--fs~dg~~Lasgs~DG~I~vwd~~-g~~l 511 (1133)
..+..+.+.+++.++.++.+|.+.+++.+ |+....+.. +...+.+ +.+++..+++| .+|.|. +..+ |+--
T Consensus 205 ~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i~-~S~DgG~tW 282 (327)
T 2xbg_A 205 RRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGALL-CSQDGGQTW 282 (327)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCEE-EESSTTSSC
T ss_pred CccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeEE-EeCCCCccc
Confidence 45677888888866677788988887543 433333321 1234555 55666655554 477773 4444 4322
Q ss_pred eeee---ccccCeEEeeec-ccceeeecccCCeeecc
Q 043350 512 ASWI---AHSSPVLKLAVG-VDHIYSLAAHGGIRGWT 544 (1133)
Q Consensus 512 ~~~~---~H~~~V~~l~fs-~~~L~S~s~Dg~I~lW~ 544 (1133)
..+. .+...+.++.|. +..++.++.+|.|.-++
T Consensus 283 ~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 283 QQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV 319 (327)
T ss_dssp EECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred EEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence 2222 234567888886 66788888999877655
No 291
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.24 E-value=1.2 Score=53.79 Aligned_cols=97 Identities=14% Similarity=0.166 Sum_probs=64.2
Q ss_pred eEEEEecCCeEEEEeC-CCCeeEEEecCC-------------cce----------------------------eEEecCC
Q 043350 452 MIWSGCTNGLLVQWDG-NGNRVSDILHHQ-------------CAV----------------------------QCFCTYG 489 (1133)
Q Consensus 452 ~L~sgs~DG~I~vWd~-~g~~l~~~~~h~-------------~~V----------------------------~~fs~dg 489 (1133)
.++.++.+|.+.++|. +|+.+..+.... .++ .+++|+.
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 3677888999999998 788877664321 111 2377777
Q ss_pred CEEEEEe-------------------------------------cCCeEEEEeCC-CCcceeeeccccCeEEee--eccc
Q 043350 490 SRMYVGY-------------------------------------VSGYLQILDLD-GNLTASWIAHSSPVLKLA--VGVD 529 (1133)
Q Consensus 490 ~~Lasgs-------------------------------------~DG~I~vwd~~-g~~l~~~~~H~~~V~~l~--fs~~ 529 (1133)
.+|++.+ .+|.|..||.. |+.+-++. +..++.+.. ..+.
T Consensus 398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~-~~~~~~~~~~~t~gg 476 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKW-EKFAAWGGTLYTKGG 476 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTT
T ss_pred CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEec-CCCCccceeEEECCC
Confidence 7777654 35789999986 55443332 223333322 2377
Q ss_pred ceeeecccCCeeeccccCCC
Q 043350 530 HIYSLAAHGGIRGWTFTSPS 549 (1133)
Q Consensus 530 ~L~S~s~Dg~I~lW~l~s~~ 549 (1133)
.++.++.||.|+.||..+..
T Consensus 477 ~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 477 LVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp EEEEECTTSEEEEEETTTCC
T ss_pred EEEEEcCCCeEEEEECCCCC
Confidence 88889999999999977644
No 292
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.17 E-value=1.9 Score=49.44 Aligned_cols=244 Identities=11% Similarity=0.091 Sum_probs=123.5
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceeeEeCCCC
Q 043350 226 LVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSLSLKPEE 303 (1133)
Q Consensus 226 ~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l~~~~~~ 303 (1133)
+|+.+. ...|+..+++. .....+......+.+|+|++.+. .++-...+.|..+++...... ...
T Consensus 85 ~ll~~~-~~~I~~i~l~~---------~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~----~~~ 150 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDR---------SEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV----SSY 150 (400)
T ss_dssp EEEEEE-TTEEEEECTTS---------CSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC----------CCC
T ss_pred eeEEec-cceeEEEccCC---------cceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC----Ccc
Confidence 444433 36788888876 22223333456788999998655 556566788888887641100 000
Q ss_pred ceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCC
Q 043350 304 KHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQS 383 (1133)
Q Consensus 304 ~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp 383 (1133)
.. ++.. ....+..+.+-...+.+.+.....+.|.+.|+........+.........+++.|
T Consensus 151 ~~---------~~~~----------~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp 211 (400)
T 3p5b_L 151 DT---------VISR----------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP 211 (400)
T ss_dssp EE---------EECS----------SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEET
T ss_pred eE---------EEeC----------CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEec
Confidence 00 0000 0011222222222333333345667787777764443334443444567888888
Q ss_pred CCCccccccceEEEEeeCC-CCccc--cccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eEE-EEec
Q 043350 384 VQDQPVEDEMKVKFVSSNK-KEKPH--GFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MIW-SGCT 458 (1133)
Q Consensus 384 ~g~~~~e~e~~v~lasgs~-Dg~i~--~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~-sgs~ 458 (1133)
.+.. + +++-.. .+.|. ..++.....+ . ...-.....|++++++ .|+ +-..
T Consensus 212 ~~g~-------l-y~td~~~~~~I~~~~~dG~~~~~~-----------~------~~~l~~P~glavd~~~~~lY~aD~~ 266 (400)
T 3p5b_L 212 VHGF-------M-YWTDWGTPAKIKKGGLNGVDIYSL-----------V------TENIQWPNGITLDLLSGRLYWVDSK 266 (400)
T ss_dssp TTTE-------E-EEEECSSSCCEEEEETTSCSCEEE-----------E------CSSCSCEEEEEEETTTTEEEEEETT
T ss_pred ccCe-------E-EEEeCCCCCEEEEEeCCCCccEEE-----------E------ECCCCceEEEEEEeCCCEEEEEECC
Confidence 6544 0 333211 23343 1122111111 0 1122456778888766 444 4456
Q ss_pred CCeEEEEeCCCCeeEEEecC---CcceeEEecCCCEE-EEEecCCeEEEEe-CCCCcceeeeccccCeEEeeec
Q 043350 459 NGLLVQWDGNGNRVSDILHH---QCAVQCFCTYGSRM-YVGYVSGYLQILD-LDGNLTASWIAHSSPVLKLAVG 527 (1133)
Q Consensus 459 DG~I~vWd~~g~~l~~~~~h---~~~V~~fs~dg~~L-asgs~DG~I~vwd-~~g~~l~~~~~H~~~V~~l~fs 527 (1133)
.+.|..++++|.....+... -.....+..++..| ++-...+.|..+| ..|+.+..+........+|++.
T Consensus 267 ~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v~ 340 (400)
T 3p5b_L 267 LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF 340 (400)
T ss_dssp TTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEEE
T ss_pred CCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEEE
Confidence 78899999988555444321 12233444455544 4555678888888 4566665555444445555443
No 293
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=96.10 E-value=1.1 Score=54.30 Aligned_cols=58 Identities=24% Similarity=0.385 Sum_probs=43.3
Q ss_pred cCCeEEEEeC-CCCeeEEEecCCccee-E-EecCCCEEEEEecCCeEEEEeCC-CCcceeeec
Q 043350 458 TNGLLVQWDG-NGNRVSDILHHQCAVQ-C-FCTYGSRMYVGYVSGYLQILDLD-GNLTASWIA 516 (1133)
Q Consensus 458 ~DG~I~vWd~-~g~~l~~~~~h~~~V~-~-fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~ 516 (1133)
.+|.|..||+ +|+.+.+..... ++. . +...+..|+.|+.||.++.||.+ |+++-+++-
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKMERF-AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CcCeEEEEECCCCCEEeEecCCC-CccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence 4588999999 778887775422 222 2 66778889999999999999986 677666554
No 294
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=96.07 E-value=0.44 Score=52.68 Aligned_cols=104 Identities=10% Similarity=-0.036 Sum_probs=65.6
Q ss_pred EEEEEECCCC-eEEEE-ecCCeEEEEeCCCC---eeEEEecCCccee--EEecCCCEEEEEec----------CCeEEEE
Q 043350 442 TEAMVLTADG-MIWSG-CTNGLLVQWDGNGN---RVSDILHHQCAVQ--CFCTYGSRMYVGYV----------SGYLQIL 504 (1133)
Q Consensus 442 V~sl~~spdg-~L~sg-s~DG~I~vWd~~g~---~l~~~~~h~~~V~--~fs~dg~~Lasgs~----------DG~I~vw 504 (1133)
...++++++| .|+.+ ..++.|.+|+..+. ....+....+ .. ++.++|.+.++... .+.|..+
T Consensus 187 p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~ 265 (322)
T 2fp8_A 187 PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKF 265 (322)
T ss_dssp CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEE
T ss_pred CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEE
Confidence 3468899998 56655 55689999998642 1222211112 22 27788875554433 4789999
Q ss_pred eCCCCcceeeeccc----cCeEEeeec-ccceeeecccCCeeecccc
Q 043350 505 DLDGNLTASWIAHS----SPVLKLAVG-VDHIYSLAAHGGIRGWTFT 546 (1133)
Q Consensus 505 d~~g~~l~~~~~H~----~~V~~l~fs-~~~L~S~s~Dg~I~lW~l~ 546 (1133)
|..++.+..+.... ..++.+++. +...++....+.|..+++.
T Consensus 266 d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 266 DEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp CTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred CCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecc
Confidence 99888777766542 346677777 5555555567778888754
No 295
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=96.03 E-value=0.035 Score=51.52 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=49.9
Q ss_pred eEEecCeEEecc-cceEEEEEEECCccceEEEEEeecCCCcccCCCCCCccccCCCcCCCCceEEecCceEECCCCeEEE
Q 043350 957 TIVSTESIILQN-QDTCTLRITNKSAQEKAIFKIICDGQSTVKDDGDASDYRLRGSFGFPRWLEVTPAAGVIKPDSYIEV 1035 (1133)
Q Consensus 957 ~~~~~~~~~~~~-~~~~~~~i~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~p~~~~~~p~~~~~~ 1035 (1133)
++++..++.|.. +....|+|+|.+.. ...|.+-|. -|.-.+|.|..|+|+||++++|
T Consensus 11 ~~~~p~~l~F~~~gg~~~l~L~N~t~~-~vAFKVKtT---------------------~p~~YrVrP~~G~I~Pg~~~~I 68 (116)
T 1m1s_A 11 INVDPPTGNYPATGGNSTHNITSESDS-RLAFKVKSS---------------------NNEHYRVRPVYGFVDAKGKSKL 68 (116)
T ss_dssp EEEESSEEEECTTCEEEEEEEEECSSS-EEEEEEEES---------------------CTTTEEEECSEEEECTTCEEEE
T ss_pred eecCCCeEEEecCCCEEEEEEECCCCC-eEEEEEEec---------------------CCCceEEcCCceEECCCCeEEE
Confidence 467777777753 45778999999997 889998763 2567899999999999999999
Q ss_pred EEEE
Q 043350 1036 SVHH 1039 (1133)
Q Consensus 1036 ~~~~ 1039 (1133)
.|..
T Consensus 69 ~I~~ 72 (116)
T 1m1s_A 69 DINR 72 (116)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9884
No 296
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=95.93 E-value=0.2 Score=57.87 Aligned_cols=152 Identities=13% Similarity=0.120 Sum_probs=84.6
Q ss_pred CCCCEE-EEecCCCeEEeccCCCCCCCCCCe-eeeccCCCccccccc-eEEEEE-eCCCCeEE--ecC------CcEEEe
Q 043350 113 PMVEFI-GSGGGTGIFKVPSRAAVHPGRPPC-LELRPHPLKETQAGR-FLRNIA-CTDTQLWA--GQE------CGVRFW 180 (1133)
Q Consensus 113 p~g~~l-asgs~dg~irlW~~~~~~~g~~~~-~~l~~H~~~~~~~g~-~V~~v~-s~dg~lla--s~D------g~VrvW 180 (1133)
++.++| ++|..++.|.+.|..+ .|.++.+ .++++-... ..+|. .-..+. .++| +++ ..+ +.|.+.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t-~p~~p~~~k~ie~~~~~-~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vl 169 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKP-NPREPKIIKVIEPEEVK-KVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILML 169 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCS-CTTSCEEEEEECHHHHH-HHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCC-CCCCceeeeeechhhcc-cccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEE
Confidence 777776 5577788999999753 2333311 222210000 01111 233445 7888 555 222 679999
Q ss_pred eCCCC--CCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEe-------------------CCCeEEEE
Q 043350 181 NLEDS--YEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGH-------------------KDGKIRSW 239 (1133)
Q Consensus 181 dl~~~--~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs-------------------~Dg~V~vW 239 (1133)
|..+. ...+..-. ....--+.+.|+|+++.+++.. .+.+|.+|
T Consensus 170 D~~T~~v~~~~~~~~----------------~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~ 233 (462)
T 2ece_A 170 DHYSFEPLGKWEIDR----------------GDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFW 233 (462)
T ss_dssp CTTTCCEEEECCSBC----------------TTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEE
T ss_pred ECCCCeEEEEEccCC----------------CCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEE
Confidence 98752 12211000 0001123577889999888875 36899999
Q ss_pred eCCCCCCCCCCCccccccccc--CCCCeEEEEE--eeCCc--EEEEe-----CCCcEEEEeCC
Q 043350 240 KMDQTLDDANNPFKEGLSWQA--HRGPVLAMIF--SSQGD--LWSGG-----EGGVIKIWPWE 291 (1133)
Q Consensus 240 d~~~~~~~~~~~~~~~~~l~g--H~~~V~sl~f--sp~g~--L~Sgs-----~DgtI~iWdl~ 291 (1133)
|+... +.+.++.- .......|.| +|+|+ .+++- .+++|.+|..+
T Consensus 234 D~~~~--------k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d 288 (462)
T 2ece_A 234 DLRKR--------KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYE 288 (462)
T ss_dssp ETTTT--------EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEE
T ss_pred ECCCC--------cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEec
Confidence 99861 22223322 1123445656 99998 55555 77889888764
No 297
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=95.92 E-value=2.7 Score=46.28 Aligned_cols=225 Identities=12% Similarity=0.096 Sum_probs=113.3
Q ss_pred CeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEee
Q 043350 234 GKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLV 311 (1133)
Q Consensus 234 g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~ 311 (1133)
..|+..+++. .....+........+++|++.+. .++-...+.|..+++.+... ..... .
T Consensus 10 ~~I~~i~~~~---------~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~-----~~~~~--~--- 70 (316)
T 1ijq_A 10 HEVRKMTLDR---------SEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-----VSSYD--T--- 70 (316)
T ss_dssp SSEEEEETTS---------CCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------CE--E---
T ss_pred CeEEEEECCC---------cceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC-----CcccE--E---
Confidence 4688888876 21222222345678999998755 66666778899888764100 00000 0
Q ss_pred cceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccc
Q 043350 312 ERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVED 391 (1133)
Q Consensus 312 d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~ 391 (1133)
.+. .....+....+-...+.+.+.....+.|.+.|+........+.........+++.|.+..
T Consensus 71 ---~~~----------~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~---- 133 (316)
T 1ijq_A 71 ---VIS----------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGF---- 133 (316)
T ss_dssp ---EEC----------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTE----
T ss_pred ---EEe----------CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCE----
Confidence 000 000122222222223344444456778888887643333333333445678889886554
Q ss_pred cceEEEEeeCCC-Cccc--cccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC-eE-EEEecCCeEEEEe
Q 043350 392 EMKVKFVSSNKK-EKPH--GFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG-MI-WSGCTNGLLVQWD 466 (1133)
Q Consensus 392 e~~v~lasgs~D-g~i~--~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L-~sgs~DG~I~vWd 466 (1133)
+ +++.... +.|. ..++.... +... ..-.....+++++++ .| ++-...+.|..++
T Consensus 134 ---l-y~~d~~~~~~I~~~~~dG~~~~-----------~~~~------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d 192 (316)
T 1ijq_A 134 ---M-YWTDWGTPAKIKKGGLNGVDIY-----------SLVT------ENIQWPNGITLDLLSGRLYWVDSKLHSISSID 192 (316)
T ss_dssp ---E-EEEECSSSCEEEEEETTSCCEE-----------EEEC------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ---E-EEEccCCCCeEEEEcCCCCCeE-----------EEEE------CCCCCceEEEEeccCCEEEEEECCCCeEEEEe
Confidence 0 3333222 3443 11111111 1111 122456788888766 44 4555678999999
Q ss_pred CCCCeeEEEecC---CcceeEEecCCC-EEEEEecCCeEEEEeC-CCCcceeee
Q 043350 467 GNGNRVSDILHH---QCAVQCFCTYGS-RMYVGYVSGYLQILDL-DGNLTASWI 515 (1133)
Q Consensus 467 ~~g~~l~~~~~h---~~~V~~fs~dg~-~Lasgs~DG~I~vwd~-~g~~l~~~~ 515 (1133)
.+|.....+... ......+.-++. ..++-...+.|..++. .|+.+..+.
T Consensus 193 ~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 193 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp TTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred cCCCceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 988554444321 112233332344 4445556788888886 455544443
No 298
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=95.90 E-value=0.58 Score=57.59 Aligned_cols=70 Identities=20% Similarity=0.187 Sum_probs=44.3
Q ss_pred EEEEEeCCCCEEEEEeC-CCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEe-CC-----CcEEE
Q 043350 216 MCLMVDCGNRLVWTGHK-DGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGG-EG-----GVIKI 287 (1133)
Q Consensus 216 ~~la~spd~~~LaSgs~-Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs-~D-----gtI~i 287 (1133)
.++++..++++++.|+. +..+.+||..... +..+..+...+.. .++++.++|+ ++.|+ .+ ..+.+
T Consensus 246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~------W~~~~~~~~~R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~ 318 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDS------WIPGPDMQVARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEV 318 (656)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGGGTE------EEECCCCSSCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEE
T ss_pred ccccCCCCCCEEEeCCCCCCceEEecCcCCc------eeECCCCCccccc-cceEEecCCeEEEEeCcccCCcccccceE
Confidence 34667789999999984 4689999987522 1222222222222 3455667888 77777 44 46888
Q ss_pred EeCCC
Q 043350 288 WPWES 292 (1133)
Q Consensus 288 Wdl~~ 292 (1133)
||..+
T Consensus 319 yd~~t 323 (656)
T 1k3i_A 319 YSPSS 323 (656)
T ss_dssp EETTT
T ss_pred eCCCC
Confidence 88865
No 299
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=95.78 E-value=0.035 Score=51.15 Aligned_cols=61 Identities=18% Similarity=0.291 Sum_probs=48.5
Q ss_pred eEEecCeEEecc-cceEEEEEEECCccceEEEEEeecCCCcccCCCCCCccccCCCcCCCCceEEecCceEECCCCeEEE
Q 043350 957 TIVSTESIILQN-QDTCTLRITNKSAQEKAIFKIICDGQSTVKDDGDASDYRLRGSFGFPRWLEVTPAAGVIKPDSYIEV 1035 (1133)
Q Consensus 957 ~~~~~~~~~~~~-~~~~~~~i~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~p~~~~~~p~~~~~~ 1035 (1133)
+.|+..++.|.. .....|+|.|.+.. ...|.+-|. -|.-.+|.|..|+|+||++++|
T Consensus 3 L~i~P~~l~F~~~~~~~~l~L~N~t~~-~vaFKVKtT---------------------~p~~y~VrP~~G~I~P~~~~~i 60 (109)
T 1row_A 3 LTADPPACTVPAAGVSSTHKLVNGGAE-KIVFKIKSS---------------------NNNEYRIAPVFGFVDPSGSKDV 60 (109)
T ss_dssp CEEESSSEEEETTCEEEEEEEEECSSS-CEEEEEEES---------------------CSSSEEEECSEEEECTTEEEEE
T ss_pred EEEECCEeEEeCCCCeEEEEEEcCCCC-eEEEEEEeC---------------------CCCceEEcCCceEECCCCeEEE
Confidence 356666677753 34678999999997 889998762 2567899999999999999999
Q ss_pred EEEE
Q 043350 1036 SVHH 1039 (1133)
Q Consensus 1036 ~~~~ 1039 (1133)
.|..
T Consensus 61 ~I~~ 64 (109)
T 1row_A 61 VITR 64 (109)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9884
No 300
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=95.70 E-value=2.2 Score=49.55 Aligned_cols=61 Identities=11% Similarity=0.013 Sum_probs=41.3
Q ss_pred CCCCeEEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCcEEEEe
Q 043350 211 NTSPTMCLMVDCG--NRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGDLWSGG 280 (1133)
Q Consensus 211 h~s~V~~la~spd--~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~L~Sgs 280 (1133)
.+....+|+|+|+ ...|+.+...+.|+.++... ..+..+........+|+|+++|+|+.+.
T Consensus 137 ~~~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~---------g~v~~~~~~~~~P~giavd~dG~lyVad 199 (433)
T 4hw6_A 137 AFDNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVN---------QYVDIKTTNIGQCADVNFTLNGDMVVVD 199 (433)
T ss_dssp CCSCCCEEEECTTTTTCEEEEECBTSCEEEEETTT---------TEEEEECCCCSCEEEEEECTTCCEEEEE
T ss_pred ccCCCceEEEccccCCCEEEEEeCCCCEEEEECCC---------CEEEEeecCCCCccEEEECCCCCEEEEc
Confidence 3445679999984 45566655558899999865 3334444445568899999999944443
No 301
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=95.64 E-value=0.9 Score=48.61 Aligned_cols=183 Identities=15% Similarity=0.105 Sum_probs=102.8
Q ss_pred CCeEEEEEeeCCc-EEEEeCCC--cEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEE
Q 043350 263 GPVLAMIFSSQGD-LWSGGEGG--VIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCML 339 (1133)
Q Consensus 263 ~~V~sl~fsp~g~-L~Sgs~Dg--tI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~ 339 (1133)
.-...|.|+ ++. ..|.+.+| .|+++|+.++...-........ .+.....
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~--------------------------FgeGit~- 94 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRY--------------------------FGEGISD- 94 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTC--------------------------CEEEEEE-
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCcc--------------------------ceeEEEE-
Confidence 345789998 677 77777776 8999999874222111111110 0111111
Q ss_pred ecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeec
Q 043350 340 SDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMG 419 (1133)
Q Consensus 340 S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~ 419 (1133)
..+++.+.+..++.+.++|..+.+.+.++...... ..+++++.. ++.+..++++..++......
T Consensus 95 -~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG---~glt~dg~~---------L~~SdGs~~i~~iDp~T~~v--- 158 (262)
T 3nol_A 95 -WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG---WGLTHNDQY---------LIMSDGTPVLRFLDPESLTP--- 158 (262)
T ss_dssp -ETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC---CCEEECSSC---------EEECCSSSEEEEECTTTCSE---
T ss_pred -eCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCc---eEEecCCCE---------EEEECCCCeEEEEcCCCCeE---
Confidence 12233333356899999999999999999864422 233355665 65655566665444332221
Q ss_pred cCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEe-cCCeEEEEeC-CCCeeEEEecCC-----------ccee-E-
Q 043350 420 AADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGC-TNGLLVQWDG-NGNRVSDILHHQ-----------CAVQ-C- 484 (1133)
Q Consensus 420 ~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs-~DG~I~vWd~-~g~~l~~~~~h~-----------~~V~-~- 484 (1133)
+..+....++. .-..++.+.+. +|.|+... .+..|.+.|. +|+.+..+.... ..+. .
T Consensus 159 ----~~~I~V~~~g~---~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGI 230 (262)
T 3nol_A 159 ----VRTITVTAHGE---ELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGI 230 (262)
T ss_dssp ----EEEEECEETTE---ECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEE
T ss_pred ----EEEEEeccCCc---cccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEE
Confidence 12222211111 11223445554 67555554 5788999999 778887776521 1233 2
Q ss_pred -EecCCCEEEEEec
Q 043350 485 -FCTYGSRMYVGYV 497 (1133)
Q Consensus 485 -fs~dg~~Lasgs~ 497 (1133)
++|+++.|++.+.
T Consensus 231 A~dp~~~~lfVTGK 244 (262)
T 3nol_A 231 AWDKEHHRLFVTGK 244 (262)
T ss_dssp EEETTTTEEEEEET
T ss_pred EEcCCCCEEEEECC
Confidence 8898888887773
No 302
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=95.63 E-value=1.3 Score=51.35 Aligned_cols=151 Identities=9% Similarity=0.014 Sum_probs=83.3
Q ss_pred CCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCC-C----c
Q 043350 212 TSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEG-G----V 284 (1133)
Q Consensus 212 ~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~D-g----t 284 (1133)
+.....|+++| ++..|+.+...+.|+.+|+.. ..+..+.........|+|+++|+ |+.+... + .
T Consensus 136 ~~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~---------~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~ 206 (430)
T 3tc9_A 136 FGGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEK---------EYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPN 206 (430)
T ss_dssp CSCCCEEEEETTEEEEEEEEEBTEEEEEEETTT---------TEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEE
T ss_pred CCCCCEEEECCCCCCeEEEEeCCCcEEEEECCC---------CEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccce
Confidence 44568899998 466677666658889999876 33334434455688999999998 6666542 2 1
Q ss_pred EEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCc
Q 043350 285 IKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKE 364 (1133)
Q Consensus 285 I~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~ 364 (1133)
+.+.+........ .. +-. ...+....+-..++.+.+-...++.|..+|...+.
T Consensus 207 v~~~~~~g~~~~~------~~---------l~~------------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~ 259 (430)
T 3tc9_A 207 NYILTRESGFKVI------TE---------LTK------------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE 259 (430)
T ss_dssp EEEEEGGGTSCSE------EE---------EEE------------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE
T ss_pred EEEEeCCCceeee------ee---------ecc------------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc
Confidence 2222221110000 00 000 01122222211134444444567788888887665
Q ss_pred eeEEEecC-CcceeEEEeCCCCC-ccccccceEEEEeeCCCCccc
Q 043350 365 LLKVFNIE-GHIENRVDTQSVQD-QPVEDEMKVKFVSSNKKEKPH 407 (1133)
Q Consensus 365 ~l~~~~~h-~~~v~~l~~sp~g~-~~~e~e~~v~lasgs~Dg~i~ 407 (1133)
....+... ...-..++++|+++ + +++-...+.|.
T Consensus 260 ~~~~~~~~~~~~P~gia~~pdG~~l---------yv~d~~~~~I~ 295 (430)
T 3tc9_A 260 TTPLFTIQDSGWEFHIQFHPSGNYA---------YIVVVNQHYIL 295 (430)
T ss_dssp EEEEEECSSSSCCEEEEECTTSSEE---------EEEETTTTEEE
T ss_pred EEEEEEcCCCCcceeEEEcCCCCEE---------EEEECCCCEEE
Confidence 43333222 23466899999998 4 45555566665
No 303
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.57 E-value=3.9 Score=49.54 Aligned_cols=52 Identities=12% Similarity=0.108 Sum_probs=33.1
Q ss_pred CCeEEEEeCC-CCcceeeeccccCeEE--eeecccceeeecccCCeeeccccCCCC
Q 043350 498 SGYLQILDLD-GNLTASWIAHSSPVLK--LAVGVDHIYSLAAHGGIRGWTFTSPSP 550 (1133)
Q Consensus 498 DG~I~vwd~~-g~~l~~~~~H~~~V~~--l~fs~~~L~S~s~Dg~I~lW~l~s~~~ 550 (1133)
+|.|..||+. |+.+-+.. +..++.+ +...+..|+.++.||.|+.||..+...
T Consensus 452 ~G~l~A~D~~tG~~~W~~~-~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~ 506 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDL 506 (599)
T ss_dssp CEEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cCeEEEEECCCCCEEeEec-CCCCccCcceEecCCEEEEECCCCeEEEEECCCCCE
Confidence 4788888886 44332221 2222222 334478888899999999999877543
No 304
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=95.46 E-value=1.4 Score=47.16 Aligned_cols=173 Identities=12% Similarity=0.103 Sum_probs=96.3
Q ss_pred eEEEEEeCCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeE--EEEEeCCCCEEEEEeCC
Q 043350 158 FLRNIACTDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTM--CLMVDCGNRLVWTGHKD 233 (1133)
Q Consensus 158 ~V~~v~s~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~--~la~spd~~~LaSgs~D 233 (1133)
+...+.-.++.++. +.++.|+++|+++..-.. . +... ... .+++.. +++.+..-.+
T Consensus 56 ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~---------------~-~l~~---~~FgeGit~~g-~~Ly~ltw~~ 115 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVW---------------M-ERLG---NIFAEGLASDG-ERLYQLTWTE 115 (268)
T ss_dssp CEEEEEEETTEEEEEETTTTEEEECCSSCSSCSE---------------E-EECT---TCCEEEEEECS-SCEEEEESSS
T ss_pred ccceEEEECCEEEEEcCCCCEEEEEECCCCcEEe---------------E-ECCC---CcceeEEEEeC-CEEEEEEccC
Confidence 66777733566666 777889999998742211 0 1111 112 233332 3344444568
Q ss_pred CeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCCCc--eeeEeCCCCceEEEEe
Q 043350 234 GKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWESIE--KSLSLKPEEKHMAALL 310 (1133)
Q Consensus 234 g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~~~--~~l~~~~~~~~l~s~~ 310 (1133)
+.+.++|..+ ++.+.++..- ..=+.++ ++|+ |+.+..++.|.++|..+.. ..+.....+..
T Consensus 116 ~~v~V~D~~T--------l~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~----- 179 (268)
T 3nok_A 116 GLLFTWSGMP--------PQRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQP----- 179 (268)
T ss_dssp CEEEEEETTT--------TEEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEE-----
T ss_pred CEEEEEECCc--------CcEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcc-----
Confidence 9999999986 2334444322 2223444 5677 7777778999999987631 11211111110
Q ss_pred ecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecC-------------Cccee
Q 043350 311 VERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIE-------------GHIEN 377 (1133)
Q Consensus 311 ~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h-------------~~~v~ 377 (1133)
+ ....-+...++.+.+-...+..|.+.|..+|+.+..+... ....+
T Consensus 180 -------------v--------~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlN 238 (268)
T 3nok_A 180 -------------V--------ELINELECANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLN 238 (268)
T ss_dssp -------------C--------CCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEE
T ss_pred -------------c--------ccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceE
Confidence 0 0000011113332222245789999999999999887643 13467
Q ss_pred EEEeCCCCCc
Q 043350 378 RVDTQSVQDQ 387 (1133)
Q Consensus 378 ~l~~sp~g~~ 387 (1133)
.|+++|+++.
T Consensus 239 GIA~dp~~~r 248 (268)
T 3nok_A 239 GIAVEPGSGR 248 (268)
T ss_dssp EEEECTTTCC
T ss_pred EEEEcCCCCE
Confidence 9999997654
No 305
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=95.41 E-value=1.1 Score=48.21 Aligned_cols=191 Identities=9% Similarity=-0.025 Sum_probs=103.5
Q ss_pred eEEEEEeCCCCEEEEEeC--CCeEEEEeCCCCCCCCCCCcccccc--cccCCCCeEEEEEeeCCc-E-EEEeCCCcEEEE
Q 043350 215 TMCLMVDCGNRLVWTGHK--DGKIRSWKMDQTLDDANNPFKEGLS--WQAHRGPVLAMIFSSQGD-L-WSGGEGGVIKIW 288 (1133)
Q Consensus 215 V~~la~spd~~~LaSgs~--Dg~V~vWd~~~~~~~~~~~~~~~~~--l~gH~~~V~sl~fsp~g~-L-~Sgs~DgtI~iW 288 (1133)
...|+|++++.+.++.+. ++.|++.|+.++. .+.. +..+ .....+++. |. | ++.-.++.+.++
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~--------v~~~i~l~~~-~fgeGi~~~--g~~lyv~t~~~~~v~vi 91 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGK--------VENIHKMDDS-YFGEGLTLL--NEKLYQVVWLKNIGFIY 91 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCC--------EEEEEECCTT-CCEEEEEEE--TTEEEEEETTCSEEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCC--------EEEEEecCCC-cceEEEEEe--CCEEEEEEecCCEEEEE
Confidence 478999998655455443 5899999998622 1222 2222 122245554 55 4 444567899999
Q ss_pred eCCCC--ceeeEeC-CCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCce
Q 043350 289 PWESI--EKSLSLK-PEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKEL 365 (1133)
Q Consensus 289 dl~~~--~~~l~~~-~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~ 365 (1133)
|..+. ...+... +.+. .+.....++.+-+ .++.|.++|..+.+.
T Consensus 92 D~~t~~v~~~i~~g~~~g~--------------------------------glt~Dg~~l~vs~-gs~~l~viD~~t~~v 138 (266)
T 2iwa_A 92 DRRTLSNIKNFTHQMKDGW--------------------------------GLATDGKILYGSD-GTSILYEIDPHTFKL 138 (266)
T ss_dssp ETTTTEEEEEEECCSSSCC--------------------------------EEEECSSSEEEEC-SSSEEEEECTTTCCE
T ss_pred ECCCCcEEEEEECCCCCeE--------------------------------EEEECCCEEEEEC-CCCeEEEEECCCCcE
Confidence 98763 2222222 2211 1111222233322 467899999999998
Q ss_pred eEEEecCC--c---ceeEEEeCCCCCccccccceEEEEeeCCCCccccccccccceeeccCCce-EEEEEecCC-----c
Q 043350 366 LKVFNIEG--H---IENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSRNAIMGAADAV-RRVATRGAG-----A 434 (1133)
Q Consensus 366 l~~~~~h~--~---~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~~~~~~~~~~V-~~v~~~p~g-----~ 434 (1133)
+..+.... . ..+.+.+. ++.. .+....++.|. .+......| ..+.+..-. .
T Consensus 139 ~~~I~Vg~~~~p~~~~nele~~-dg~l---------yvn~~~~~~V~--------vID~~tg~V~~~I~~~g~~~~~~~~ 200 (266)
T 2iwa_A 139 IKKHNVKYNGHRVIRLNELEYI-NGEV---------WANIWQTDCIA--------RISAKDGTLLGWILLPNLRKKLIDE 200 (266)
T ss_dssp EEEEECEETTEECCCEEEEEEE-TTEE---------EEEETTSSEEE--------EEETTTCCEEEEEECHHHHHHHHHT
T ss_pred EEEEEECCCCcccccceeEEEE-CCEE---------EEecCCCCeEE--------EEECCCCcEEEEEECCCcccccccc
Confidence 88776432 2 24466666 4543 44443444443 222222222 223332000 0
Q ss_pred ccCCCCCEEEEEECCCC--eEEEEecCCeEEEEeC
Q 043350 435 FVDDTKRTEAMVLTADG--MIWSGCTNGLLVQWDG 467 (1133)
Q Consensus 435 ~~~h~~~V~sl~~spdg--~L~sgs~DG~I~vWd~ 467 (1133)
-.......+.++++|++ .++++...++|.+-++
T Consensus 201 ~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 201 GFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp TCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred cccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 00122457899999998 6667777888888876
No 306
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=95.39 E-value=4.9 Score=48.44 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=34.3
Q ss_pred CCeEEEEeCC-CCcceeeeccccCeEE--eeecccceeeecccCCeeeccccCCCC
Q 043350 498 SGYLQILDLD-GNLTASWIAHSSPVLK--LAVGVDHIYSLAAHGGIRGWTFTSPSP 550 (1133)
Q Consensus 498 DG~I~vwd~~-g~~l~~~~~H~~~V~~--l~fs~~~L~S~s~Dg~I~lW~l~s~~~ 550 (1133)
+|.|..||+. |+.+-+... ..++.. +...+..++.++.||.++.||..+...
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKE-HLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEE-SSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cceEEEEECCCCCEEEEecC-CCCCcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence 6889999986 554433222 223322 333478888999999999999876543
No 307
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=95.31 E-value=0.19 Score=47.63 Aligned_cols=63 Identities=22% Similarity=0.375 Sum_probs=49.8
Q ss_pred eEEecC-eEEecc----cceEEEEEEECCccceEEEEEeecCCCcccCCCCCCccccCCCcCCCCceEEecCceEECCCC
Q 043350 957 TIVSTE-SIILQN----QDTCTLRITNKSAQEKAIFKIICDGQSTVKDDGDASDYRLRGSFGFPRWLEVTPAAGVIKPDS 1031 (1133)
Q Consensus 957 ~~~~~~-~~~~~~----~~~~~~~i~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~p~~~~~~p~~ 1031 (1133)
+.++.. +|.|.. +.+..|+|+|++.. ...|.+-+. .|.-+.|.|..|+|+|||
T Consensus 9 l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~-~vaFKVKTT---------------------~p~~y~VrP~~Gii~P~~ 66 (126)
T 1msp_A 9 INTQPSQKIVFNAPYDDKHTYHIKITNAGGR-RIGWAIKTT---------------------NMRRLSVDPPCGVLDPKE 66 (126)
T ss_dssp EEEESSSCEEEESCCSSCCCEEEEEEECSSS-CEEEEEEES---------------------CTTTEEEESCEEEECTTC
T ss_pred EEEcCCCeEEEcCcCCcceEEEEEEECCCCC-eEEEEEEcC---------------------CCCcEEEECCCeEECCCC
Confidence 566665 677743 56788999999987 789998641 356789999999999999
Q ss_pred eEEEEEEEee
Q 043350 1032 YIEVSVHHEE 1041 (1133)
Q Consensus 1032 ~~~~~~~~~~ 1041 (1133)
+++|.|...-
T Consensus 67 s~~v~V~~q~ 76 (126)
T 1msp_A 67 KVLMAVSCDT 76 (126)
T ss_dssp EEEEEEEECC
T ss_pred EEEEEEEecC
Confidence 9999998644
No 308
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=95.26 E-value=4 Score=46.38 Aligned_cols=101 Identities=10% Similarity=0.057 Sum_probs=61.3
Q ss_pred CCCCeEEecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCC-CCEEEEEeCCCeEEEEeCCC
Q 043350 165 TDTQLWAGQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCG-NRLVWTGHKDGKIRSWKMDQ 243 (1133)
Q Consensus 165 ~dg~llas~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd-~~~LaSgs~Dg~V~vWd~~~ 243 (1133)
+.+.++.+....|+..++.+.... ........+..++|++. +.+.++-...+.|..+++++
T Consensus 86 ~~~~l~~~~~~~I~~i~~~~~~~~------------------~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g 147 (386)
T 3v65_B 86 PEPVLLFANRIDIRQVLPHRSEYT------------------LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNG 147 (386)
T ss_dssp SCCEEEEECBSCEEEECTTSCCCE------------------EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred ccceeEeecCccceeeccCCCcEE------------------EEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 334444477778888887653111 11122345789999975 45556666778999999886
Q ss_pred CCCCCCCCccccccc-ccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCC
Q 043350 244 TLDDANNPFKEGLSW-QAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWES 292 (1133)
Q Consensus 244 ~~~~~~~~~~~~~~l-~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~ 292 (1133)
.....+ .........|++.+.+. .++-...+.|.+.+++.
T Consensus 148 ---------~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg 190 (386)
T 3v65_B 148 ---------SNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG 190 (386)
T ss_dssp ---------CCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS
T ss_pred ---------CCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC
Confidence 212121 11223456788887544 56666677888877765
No 309
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=95.21 E-value=0.068 Score=50.93 Aligned_cols=62 Identities=31% Similarity=0.479 Sum_probs=49.5
Q ss_pred eEEecC-eEEec----ccceEEEEEEECCccceEEEEEeecCCCcccCCCCCCccccCCCcCCCCceEEecCceEECCCC
Q 043350 957 TIVSTE-SIILQ----NQDTCTLRITNKSAQEKAIFKIICDGQSTVKDDGDASDYRLRGSFGFPRWLEVTPAAGVIKPDS 1031 (1133)
Q Consensus 957 ~~~~~~-~~~~~----~~~~~~~~i~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~p~~~~~~p~~ 1031 (1133)
+.++.. ++.|. .+.+..|+|+|++.. ...|.+-+. .|.-+.|.|..|+|.||+
T Consensus 11 L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~-~vaFKVKTT---------------------~p~~y~VrP~~G~i~P~~ 68 (128)
T 1z9l_A 11 LVLDPPSDLKFKGPFTDVVTTNLKLQNPSDR-KVCFKVKTT---------------------APRRYCVRPNSGVIDPGS 68 (128)
T ss_dssp SEEESSSEEEEESCCSSCEEEEEEEECCSSS-CEEEEEEES---------------------CGGGEEEESCEEEECTTC
T ss_pred EEECCCCeEEEcCCCCceEEEEEEEECCCCC-eEEEEEECC---------------------CCCceEEeCCCcEECCCC
Confidence 467764 77773 344778999999987 889999752 256789999999999999
Q ss_pred eEEEEEEEe
Q 043350 1032 YIEVSVHHE 1040 (1133)
Q Consensus 1032 ~~~~~~~~~ 1040 (1133)
+++|.|.+.
T Consensus 69 s~~v~V~~~ 77 (128)
T 1z9l_A 69 IVTVSVMLQ 77 (128)
T ss_dssp EEEEEEEEC
T ss_pred eEEEEEEEC
Confidence 999999853
No 310
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=95.19 E-value=4.2 Score=44.86 Aligned_cols=225 Identities=9% Similarity=0.025 Sum_probs=111.9
Q ss_pred CCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEe
Q 043350 233 DGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALL 310 (1133)
Q Consensus 233 Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~ 310 (1133)
...|+..++++... ....+......+.+|+|.+.+. .++-...+.|..++++..... ..++...
T Consensus 12 ~~~I~~i~l~~~~~-------~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~-------~~~~~~~ 77 (318)
T 3sov_A 12 RRDLRLVDATNGKE-------NATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV-------QNVVVSG 77 (318)
T ss_dssp EEEEEEEETTCTTS-------CCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC-------CEEEEEC
T ss_pred cCeEEEEECCCCce-------EEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce-------EEEEcCC
Confidence 36789999886210 1111112223567899998644 666667788888888653110 0000000
Q ss_pred ecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCcccc
Q 043350 311 VERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVE 390 (1133)
Q Consensus 311 ~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e 390 (1133)
...+....+-...+.+.+.....+.|.++++........+.........+++.|.+...
T Consensus 78 -------------------l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~l-- 136 (318)
T 3sov_A 78 -------------------LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFM-- 136 (318)
T ss_dssp -------------------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEE--
T ss_pred -------------------CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEE--
Confidence 01122222221223333333556677777765332222233334456788888764440
Q ss_pred ccceEEEEeeC-CCCccc--cccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCC--eEEEEecCCeEEEE
Q 043350 391 DEMKVKFVSSN-KKEKPH--GFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADG--MIWSGCTNGLLVQW 465 (1133)
Q Consensus 391 ~e~~v~lasgs-~Dg~i~--~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg--~L~sgs~DG~I~vW 465 (1133)
+++-. ..+.|. ..++.....+ .. ..-..-..|++++++ ..++-...+.|..+
T Consensus 137 ------y~td~~~~~~I~r~~~dG~~~~~~-----------~~------~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~ 193 (318)
T 3sov_A 137 ------YWTDWGEVPKIERAGMDGSSRFII-----------IN------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKS 193 (318)
T ss_dssp ------EEEECSSSCEEEEEETTSCSCEEE-----------EC------SSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ------EEEecCCCCEEEEEEcCCCCeEEE-----------EE------CCCCCccEEEEeccCCEEEEEECCCCEEEEE
Confidence 22221 123333 1111111110 00 112345778888855 44555567899999
Q ss_pred eCCCCeeEEEec-CCcceeEEecCCC-EEEEEecCCeEEEEeC-CCCcceeee
Q 043350 466 DGNGNRVSDILH-HQCAVQCFCTYGS-RMYVGYVSGYLQILDL-DGNLTASWI 515 (1133)
Q Consensus 466 d~~g~~l~~~~~-h~~~V~~fs~dg~-~Lasgs~DG~I~vwd~-~g~~l~~~~ 515 (1133)
+.+|.....+.. .......+..++. .+++-...+.|..++. .|+....+.
T Consensus 194 d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 194 NLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp ETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred cCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 998754444432 2222233333444 4445556788999987 465544443
No 311
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=95.17 E-value=3.7 Score=44.70 Aligned_cols=217 Identities=10% Similarity=-0.067 Sum_probs=109.3
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCCeEEec--CCc--EEEeeCC
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQLWAGQ--ECG--VRFWNLE 183 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~llas~--Dg~--VrvWdl~ 183 (1133)
+.++|+|.++++-...+.|..++.. +.. ...+. -.. ....++ .++|+++++. ... |..++..
T Consensus 37 ia~~~~g~lyv~d~~~~~I~~~d~~----g~~-~~~~~-~~~-------~p~gia~~~dG~l~vad~~~~~~~v~~~d~~ 103 (306)
T 2p4o_A 37 LASAPDGTIFVTNHEVGEIVSITPD----GNQ-QIHAT-VEG-------KVSGLAFTSNGDLVATGWNADSIPVVSLVKS 103 (306)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT----CCE-EEEEE-CSS-------EEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred EEECCCCCEEEEeCCCCeEEEECCC----Cce-EEEEe-CCC-------CceeEEEcCCCcEEEEeccCCcceEEEEcCC
Confidence 5678899988887788899888876 433 22221 122 577788 8888888722 223 5555544
Q ss_pred CC-CCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCc---cccc--c
Q 043350 184 DS-YEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPF---KEGL--S 257 (1133)
Q Consensus 184 ~~-~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~---~~~~--~ 257 (1133)
+. ...+ ...........++..+++..+++-..++.|.++|...+.. ..+ .... .
T Consensus 104 ~g~~~~~-----------------~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~---~v~~~~~~~~~~~ 163 (306)
T 2p4o_A 104 DGTVETL-----------------LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG---SIWLEHPMLARSN 163 (306)
T ss_dssp TSCEEEE-----------------EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE---EEEEECGGGSCSS
T ss_pred CCeEEEE-----------------EeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE---eEEEECCcccccc
Confidence 32 1111 0000111123334444555555555678888888754100 000 0000 0
Q ss_pred cccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCe
Q 043350 258 WQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEI 335 (1133)
Q Consensus 258 l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~ 335 (1133)
..+.-...+.| ++++. +++-+..+.|..+++... ..+ ..... ...+ ..++.
T Consensus 164 ~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~-g~~----~~~~~--------~~~~------------~~P~g 216 (306)
T 2p4o_A 164 SESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDST-DKP----GEPEI--------FVEQ------------TNIDD 216 (306)
T ss_dssp TTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTT-SCB----CCCEE--------EEES------------CCCSS
T ss_pred ccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCC-CCC----CccEE--------Eecc------------CCCCC
Confidence 11111234555 78876 455567788999988641 000 00000 0000 11222
Q ss_pred EEEEecCCceEEEecCCCceeEeecCCCceeE--EEecCCcceeEEEeC---CCCCc
Q 043350 336 KCMLSDHARARVWCAQPLSFSLWDARSKELLK--VFNIEGHIENRVDTQ---SVQDQ 387 (1133)
Q Consensus 336 ~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~--~~~~h~~~v~~l~~s---p~g~~ 387 (1133)
.. +..++.+.+-....+.|.++|.. |+... .+.......++++|. |++..
T Consensus 217 i~-vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~ 271 (306)
T 2p4o_A 217 FA-FDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTA 271 (306)
T ss_dssp EE-EBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTE
T ss_pred eE-ECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCE
Confidence 22 22233333333556788888864 66533 233333457899998 77665
No 312
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=95.13 E-value=0.82 Score=54.69 Aligned_cols=179 Identities=11% Similarity=0.042 Sum_probs=103.8
Q ss_pred cCCCceeEeecCCCceeEEEecC-CcceeEEEe-C-CCCCccccccceEEEEeeCC-------CCccc---cccccccce
Q 043350 350 AQPLSFSLWDARSKELLKVFNIE-GHIENRVDT-Q-SVQDQPVEDEMKVKFVSSNK-------KEKPH---GFLQRSRNA 416 (1133)
Q Consensus 350 s~d~~I~lWD~~tg~~l~~~~~h-~~~v~~l~~-s-p~g~~~~e~e~~v~lasgs~-------Dg~i~---~~~~~~~~~ 416 (1133)
..+..|.+.|+.+.++.+.+... ......+++ + |++.+ +++++. ||+.. .........
T Consensus 109 ~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~---------v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 109 KANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNY---------VFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp TTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSE---------EEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcE---------EEEecccccccCCCCcccccccccCceEEE
Confidence 55677999999999998866543 344778887 5 89988 777753 44432 111112222
Q ss_pred eeccCC-ceEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCC----------------------------------
Q 043350 417 IMGAAD-AVRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNG---------------------------------- 460 (1133)
Q Consensus 417 ~~~~~~-~V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG---------------------------------- 460 (1133)
+..... .++.+... + .-..++++|+| ++++.+.+.
T Consensus 180 ID~~t~~v~~qI~Vg------g---~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~ 250 (595)
T 1fwx_A 180 VDADKWEVAWQVLVS------G---NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY 250 (595)
T ss_dssp EETTTTEEEEEEEES------S---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred EECCCCeEEEEEEeC------C---CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCe
Confidence 222221 12222221 0 11234566666 555555432
Q ss_pred ----eEEEEeCC---CCe-eEEEecCCcceeE-EecCCCEEEEEe-cCCeEEEEeCCCC-------------cceeeecc
Q 043350 461 ----LLVQWDGN---GNR-VSDILHHQCAVQC-FCTYGSRMYVGY-VSGYLQILDLDGN-------------LTASWIAH 517 (1133)
Q Consensus 461 ----~I~vWd~~---g~~-l~~~~~h~~~V~~-fs~dg~~Lasgs-~DG~I~vwd~~g~-------------~l~~~~~H 517 (1133)
.|.+.|.. ++. +..+.....+-.. ++|||+++++++ .+.+|.++|+... ...... -
T Consensus 251 ~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-v 329 (595)
T 1fwx_A 251 QELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-L 329 (595)
T ss_dssp EEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-C
T ss_pred eEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-C
Confidence 36666663 233 4444443333334 999999887766 7899999998742 111111 1
Q ss_pred ccCeEEeeec--ccceeeecccCCeeeccccC
Q 043350 518 SSPVLKLAVG--VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 518 ~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~s 547 (1133)
......++|+ |....+.-.|++|..|++..
T Consensus 330 G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 330 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 2456888998 63334567799999999654
No 313
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.92 E-value=0.085 Score=51.55 Aligned_cols=62 Identities=29% Similarity=0.477 Sum_probs=50.0
Q ss_pred eEEecC-eEEec----ccceEEEEEEECCccceEEEEEeecCCCcccCCCCCCccccCCCcCCCCceEEecCceEECCCC
Q 043350 957 TIVSTE-SIILQ----NQDTCTLRITNKSAQEKAIFKIICDGQSTVKDDGDASDYRLRGSFGFPRWLEVTPAAGVIKPDS 1031 (1133)
Q Consensus 957 ~~~~~~-~~~~~----~~~~~~~~i~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~p~~~~~~p~~ 1031 (1133)
+.|+.. +|.|. .+.+..|+|+|++.. +..|.|-+. .|.-..|.|..|+|+||+
T Consensus 15 L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~-~VaFKVKTT---------------------~p~~y~VrP~~GiI~P~~ 72 (147)
T 2cri_A 15 LVLDPPSDLKFKGPFTDVVTTNLKLQNPSDR-KVCFKVKTT---------------------APRRYCVRPNSGIIDPGS 72 (147)
T ss_dssp SEEESSSEEEEECCSSSCCCEEEEEECCSSS-CEEEEEEES---------------------CTTSEEEESSEEECCTTC
T ss_pred EEECCCCeEEEeCCCCceEEEEEEEECCCCC-cEEEEEECC---------------------CCccEEEcCCCcEECCCC
Confidence 567775 78773 345778999999987 899999752 356779999999999999
Q ss_pred eEEEEEEEe
Q 043350 1032 YIEVSVHHE 1040 (1133)
Q Consensus 1032 ~~~~~~~~~ 1040 (1133)
+++|.|.+.
T Consensus 73 s~~v~V~l~ 81 (147)
T 2cri_A 73 IVTVSVMLQ 81 (147)
T ss_dssp EEEEEEEEC
T ss_pred eEEEEEEEC
Confidence 999999854
No 314
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=94.83 E-value=0.026 Score=64.77 Aligned_cols=31 Identities=10% Similarity=0.059 Sum_probs=24.6
Q ss_pred eEEEEEecccccChHHHHHHHHHHHHHHHhC
Q 043350 709 RTICFVNCHLAAHLEAVNRRNADYDHIYRNM 739 (1133)
Q Consensus 709 ~~~~fvn~Hlaa~~~~~~~Rn~d~~~i~~~~ 739 (1133)
..|+++|+||..+-..-..|..+...|++.+
T Consensus 195 ~~l~V~nTHL~~~p~~~~vRl~Q~~~Ll~~l 225 (398)
T 3ngq_A 195 QLLIVANAHMHWDPEYSDVKLIQTMMFVSEV 225 (398)
T ss_dssp CEEEEEEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEeCcCCCCCCHHHHHHHHHHHHHHH
Confidence 4599999999997665667888888787765
No 315
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=94.82 E-value=0.036 Score=59.21 Aligned_cols=37 Identities=27% Similarity=0.404 Sum_probs=25.3
Q ss_pred eEEEEEEcCCCCCCch-----hhhhhhcCCCCCccEEEEeeeecc
Q 043350 574 ILVGTWNVGQGRASHE-----SLLSWLGSVSSDVGIVAVGLQEVE 613 (1133)
Q Consensus 574 I~v~TWNv~~~~~~~~-----~l~~wl~~~~~~~di~vig~QE~~ 613 (1133)
+.+.|||+-++.+..+ .+..||.. ..++||+ .|||++
T Consensus 5 ~kv~TwNi~g~~~~~~~k~~~~i~~~i~~-~~~~DIl--aLQEa~ 46 (261)
T 1sr4_B 5 FKVATWNLQGSSAVNESKWNINVRQLLSG-EQGADIL--MVQEAG 46 (261)
T ss_dssp SCEEEEECCCCSSSSHHHHHHHHHHHHCS-TTCCSEE--EEESCC
T ss_pred cEEEEEEcCCCCCCChhhhhhHHHHHHcC-CCCCCEE--EEecCC
Confidence 4578999987655432 36778863 2457875 689996
No 316
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=94.74 E-value=0.34 Score=60.19 Aligned_cols=146 Identities=10% Similarity=0.113 Sum_probs=73.7
Q ss_pred ceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCC-Cccc--cccccccceeecc
Q 043350 344 RARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKK-EKPH--GFLQRSRNAIMGA 420 (1133)
Q Consensus 344 ~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~D-g~i~--~~~~~~~~~~~~~ 420 (1133)
.+.+.....+.|.+.|+........+.........+++.|.+... +++-... ++|. ..++.....+.
T Consensus 466 ~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~l--------y~td~~~~~~I~~~~~dG~~~~~l~-- 535 (699)
T 1n7d_A 466 NIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFM--------YWTDWGTPAKIKKGGLNGVDIYSLV-- 535 (699)
T ss_dssp BCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCC--------EECCCSSSCCEEBCCSSSCCCCEES--
T ss_pred cEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcE--------EEcccCCCCeEEEEeCCCCCeeEEE--
Confidence 333333566778888876443333333333445678888864430 3333222 4443 12222111110
Q ss_pred CCceEEEEEecCCcccCCCCCEEEEEECCCC--eEEEEecCCeEEEEeCCCCeeEEEecCC---cceeEEecCCCEE-EE
Q 043350 421 ADAVRRVATRGAGAFVDDTKRTEAMVLTADG--MIWSGCTNGLLVQWDGNGNRVSDILHHQ---CAVQCFCTYGSRM-YV 494 (1133)
Q Consensus 421 ~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg--~L~sgs~DG~I~vWd~~g~~l~~~~~h~---~~V~~fs~dg~~L-as 494 (1133)
...-.....|++++++ ++++-...+.|.+++++|.....+.... .....+..+++.| ++
T Consensus 536 ---------------~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywt 600 (699)
T 1n7d_A 536 ---------------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWT 600 (699)
T ss_dssp ---------------CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEE
T ss_pred ---------------eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEE
Confidence 0111234567888775 4555566788999999875444443211 1112233344444 44
Q ss_pred EecCCeEEEEeCC-CCcceee
Q 043350 495 GYVSGYLQILDLD-GNLTASW 514 (1133)
Q Consensus 495 gs~DG~I~vwd~~-g~~l~~~ 514 (1133)
....+.|..++.. |+.+..+
T Consensus 601 d~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 601 DIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp CSTTTCEEEEETTTEEEEECC
T ss_pred eCCCCeEEEEEccCCCceEEe
Confidence 4567889999864 5444444
No 317
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=94.73 E-value=5.9 Score=49.56 Aligned_cols=240 Identities=12% Similarity=0.101 Sum_probs=117.7
Q ss_pred EEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCC
Q 043350 216 MCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESI 293 (1133)
Q Consensus 216 ~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~ 293 (1133)
.|.+..+.. +|+.+. ...|+..++.. .....+......+.+|+|.+.+. +++-...+.|+.+++...
T Consensus 388 ~C~~~~~~p-~Ll~an-~~~Ir~i~l~~---------~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~ 456 (791)
T 3m0c_C 388 ACKAVGSIA-YLFFTN-RHEVRKMTLDR---------SEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRA 456 (791)
T ss_dssp CCEETTSCC-EEEEEC-BSSEEEECTTS---------CCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---
T ss_pred eeeeccccc-cccccc-ccceeEeeccC---------CcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCC
Confidence 344443333 333333 35677777775 22223333456678999998544 666667788888887642
Q ss_pred ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCC
Q 043350 294 EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEG 373 (1133)
Q Consensus 294 ~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~ 373 (1133)
... ..... ++.. ....+..+.+-...+.+++.....+.|.+.++........+....
T Consensus 457 ~~~----~~~~~---------vi~~----------~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l 513 (791)
T 3m0c_C 457 HGV----SSYDT---------VISR----------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG 513 (791)
T ss_dssp ---------CEE---------EECS----------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTT
T ss_pred CCC----cceeE---------EEec----------CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCC
Confidence 000 00000 0000 001222222222223344444567788888876443333333344
Q ss_pred cceeEEEeCCCCCccccccceEEEEeeCCC-Cccc--cccccccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCC
Q 043350 374 HIENRVDTQSVQDQPVEDEMKVKFVSSNKK-EKPH--GFLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTAD 450 (1133)
Q Consensus 374 ~~v~~l~~sp~g~~~~e~e~~v~lasgs~D-g~i~--~~~~~~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spd 450 (1133)
.....|++.|..... +++-... +.|. .+++..... ... ..-.....|++++.
T Consensus 514 ~~P~gIaVDp~~g~L--------YwtD~g~~~~I~~~~~dG~~~~~-----------lv~------~~l~~P~GLavD~~ 568 (791)
T 3m0c_C 514 SKPRAIVVDPVHGFM--------YWTDWGTPAKIKKGGLNGVDIYS-----------LVT------ENIQWPNGITLDLL 568 (791)
T ss_dssp CCEEEEEEETTTTEE--------EEEECSSSCEEEEEETTSCCEEE-----------EEC------SSCSCEEEEEEETT
T ss_pred CCcceEEEecCCCCE--------EEecCCCCCeEEEEecCCCceEE-----------EEe------CCCCCceEEEEecC
Confidence 456788998864440 3332221 3343 122211111 111 12245677888865
Q ss_pred C-eE-EEEecCCeEEEEeCCCCeeEEEecC---CcceeEEecCCCEEEEEe-cCCeEEEEeC-CCCcceee
Q 043350 451 G-MI-WSGCTNGLLVQWDGNGNRVSDILHH---QCAVQCFCTYGSRMYVGY-VSGYLQILDL-DGNLTASW 514 (1133)
Q Consensus 451 g-~L-~sgs~DG~I~vWd~~g~~l~~~~~h---~~~V~~fs~dg~~Lasgs-~DG~I~vwd~-~g~~l~~~ 514 (1133)
+ .| ++-...+.|...+++|.....+... -.....+..++.+|+... ..+.|...|. .|+.+..+
T Consensus 569 ~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 569 SGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 5 44 4445567899999988655554321 112234555555555554 5577777774 45444444
No 318
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=94.57 E-value=1.3 Score=55.46 Aligned_cols=69 Identities=9% Similarity=-0.020 Sum_probs=44.7
Q ss_pred CeEEEEEe-CCCCEEEEEeC-C----CeEEEEeCCCC-CCCCCCCcccccccccCCCCeEEEEEeeCCc-EEEEeCC---
Q 043350 214 PTMCLMVD-CGNRLVWTGHK-D----GKIRSWKMDQT-LDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWSGGEG--- 282 (1133)
Q Consensus 214 ~V~~la~s-pd~~~LaSgs~-D----g~V~vWd~~~~-~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~Sgs~D--- 282 (1133)
.+...+|| |||++||-+.. + .+|+++|+.++ .. . ...+. ....+++|+|||+ |+..+.|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-----l--~~~~~---~~~~~~~WspDg~~l~y~~~d~~~ 244 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-----I--ADKVS---GTNGEIVWGPDHTSLFYVTKDETL 244 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-----C--CCCEE---EECSCCEECSSTTEEEEEEECTTC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-----C--Ccccc---CceeeEEEecCCCEEEEEEECCCC
Confidence 46778999 99998875443 2 35999999873 21 0 00111 1234689999998 6666655
Q ss_pred --CcEEEEeCCC
Q 043350 283 --GVIKIWPWES 292 (1133)
Q Consensus 283 --gtI~iWdl~~ 292 (1133)
..|.+|++.+
T Consensus 245 ~~~~v~~~~lgt 256 (751)
T 2xe4_A 245 RENKVWRHVMGK 256 (751)
T ss_dssp CEEEEEEEETTS
T ss_pred CCCEEEEEECCC
Confidence 2577777765
No 319
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=94.47 E-value=7.1 Score=42.83 Aligned_cols=106 Identities=12% Similarity=0.115 Sum_probs=64.3
Q ss_pred CCEEEEEECCCC-eE-EEEecC-CeEEEEeCCCCeeEEEecC-CcceeE--EecCCCEEEEEe-cCCeEEEEeCCCCcce
Q 043350 440 KRTEAMVLTADG-MI-WSGCTN-GLLVQWDGNGNRVSDILHH-QCAVQC--FCTYGSRMYVGY-VSGYLQILDLDGNLTA 512 (1133)
Q Consensus 440 ~~V~sl~~spdg-~L-~sgs~D-G~I~vWd~~g~~l~~~~~h-~~~V~~--fs~dg~~Lasgs-~DG~I~vwd~~g~~l~ 512 (1133)
.....+++.|.+ .| ++.... +.|...+.+|.....+... -..... +++++..|+.+. ..+.|..+|++|....
T Consensus 120 ~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~ 199 (316)
T 1ijq_A 120 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK 199 (316)
T ss_dssp CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceE
Confidence 356788888754 44 444333 7899999988665555321 222233 888777776655 5679999999886544
Q ss_pred eeec---cccCeEEeeec-ccceeeecccCCeeeccc
Q 043350 513 SWIA---HSSPVLKLAVG-VDHIYSLAAHGGIRGWTF 545 (1133)
Q Consensus 513 ~~~~---H~~~V~~l~fs-~~~L~S~s~Dg~I~lW~l 545 (1133)
.+.. .-....+|++. +..+++-...+.|...+.
T Consensus 200 ~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 200 TILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp EEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred EEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeC
Confidence 4432 12334667776 444445445556666553
No 320
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=94.24 E-value=2 Score=46.03 Aligned_cols=113 Identities=15% Similarity=0.169 Sum_probs=65.4
Q ss_pred eEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-EEE-EeCCCcEEEEeCCC
Q 043350 215 TMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD-LWS-GGEGGVIKIWPWES 292 (1133)
Q Consensus 215 V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~-L~S-gs~DgtI~iWdl~~ 292 (1133)
...|.|+ ++.+..+.+.+|.|+++|+.++.. ...+ +. ......-..++|+ |+. .-.++.+.++|..+
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv-----~~~~--l~---~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~T 125 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQP-----VWME--RL---GNIFAEGLASDGERLYQLTWTEGLLFTWSGMP 125 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSC-----SEEE--EC---TTCCEEEEEECSSCEEEEESSSCEEEEEETTT
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcE-----EeEE--CC---CCcceeEEEEeCCEEEEEEccCCEEEEEECCc
Confidence 3567776 467778888889999999987322 1111 22 2333333344556 444 44688999999987
Q ss_pred C--ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceEEEecCCCceeEeecCCCceeEEEe
Q 043350 293 I--EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFN 370 (1133)
Q Consensus 293 ~--~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~ 370 (1133)
. ...+...+++.- +. ++. ..+..+ ..++.|.++|..+.+.+..+.
T Consensus 126 l~~~~ti~~~~eGwG------------Lt-----------~Dg-~~L~vS---------dGs~~l~~iDp~T~~v~~~I~ 172 (268)
T 3nok_A 126 PQRERTTRYSGEGWG------------LC-----------YWN-GKLVRS---------DGGTMLTFHEPDGFALVGAVQ 172 (268)
T ss_dssp TEEEEEEECSSCCCC------------EE-----------EET-TEEEEE---------CSSSEEEEECTTTCCEEEEEE
T ss_pred CcEEEEEeCCCceeE------------Ee-----------cCC-CEEEEE---------CCCCEEEEEcCCCCeEEEEEE
Confidence 3 233333222211 00 111 112222 237789999999999888776
Q ss_pred c
Q 043350 371 I 371 (1133)
Q Consensus 371 ~ 371 (1133)
.
T Consensus 173 V 173 (268)
T 3nok_A 173 V 173 (268)
T ss_dssp C
T ss_pred e
Confidence 5
No 321
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=94.20 E-value=0.1 Score=51.28 Aligned_cols=62 Identities=18% Similarity=0.297 Sum_probs=48.6
Q ss_pred eEEecC-eEEecc----cceEEEEEEECCccceEEEEEeecCCCcccCCCCCCccccCCCcCCCCceEEecCceEECCCC
Q 043350 957 TIVSTE-SIILQN----QDTCTLRITNKSAQEKAIFKIICDGQSTVKDDGDASDYRLRGSFGFPRWLEVTPAAGVIKPDS 1031 (1133)
Q Consensus 957 ~~~~~~-~~~~~~----~~~~~~~i~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~p~~~~~~p~~ 1031 (1133)
+.|+.. ++.|.. +.+..|+|+|++.. ...|.+-+. .|.-..|.|..|+|.||+
T Consensus 19 L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~-~VaFKVKTT---------------------~p~~y~VrP~~GiI~P~~ 76 (152)
T 1wic_A 19 LHISPAEELYFGSIESGEKKTLIVLTNVTKN-IVAFKVRTT---------------------APEKYRVKPSNSSCDPGA 76 (152)
T ss_dssp BCBBSSSCBCCCCSSSSCCCEEEEEEBCSSS-CEEEEEEES---------------------CTTTEEEESSEEEECTTC
T ss_pred EEECCCCeEEEeCCCCceEEEEEEEEcCCCC-eEEEEEECC---------------------CCCceeecCCCcEECCCC
Confidence 455555 566642 34678999999986 899999752 256679999999999999
Q ss_pred eEEEEEEEe
Q 043350 1032 YIEVSVHHE 1040 (1133)
Q Consensus 1032 ~~~~~~~~~ 1040 (1133)
+++|.|.+.
T Consensus 77 s~~V~V~lq 85 (152)
T 1wic_A 77 SIDIIVSPH 85 (152)
T ss_dssp EEEEEEEEC
T ss_pred eEEEEEEec
Confidence 999999963
No 322
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=94.16 E-value=4.9 Score=42.44 Aligned_cols=185 Identities=13% Similarity=0.049 Sum_probs=102.8
Q ss_pred cC--CCCeEEEEEeeCCc-EEEEeCCC--cEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCC
Q 043350 260 AH--RGPVLAMIFSSQGD-LWSGGEGG--VIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTE 334 (1133)
Q Consensus 260 gH--~~~V~sl~fsp~g~-L~Sgs~Dg--tI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~ 334 (1133)
.| ..-...|.|++ +. ..|.+.+| .|+..|+.++...-....... ..+.
T Consensus 16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~--------------------------~fge 68 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP--------------------------YFGA 68 (243)
T ss_dssp ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT--------------------------CCEE
T ss_pred CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC--------------------------ccee
Confidence 55 34577999986 66 67777754 899999987422221111111 0011
Q ss_pred eEEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCcccccccccc
Q 043350 335 IKCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPHGFLQRSR 414 (1133)
Q Consensus 335 ~~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~~~~~~~~ 414 (1133)
.... ..+++.+....++.+.+||..+.+.+.++...... ..+.+++.. ++.+..++++..++....
T Consensus 69 Gi~~--~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G---wglt~dg~~---------L~vSdgs~~l~~iDp~t~ 134 (243)
T 3mbr_X 69 GIVA--WRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG---WALTSDDSH---------LYMSDGTAVIRKLDPDTL 134 (243)
T ss_dssp EEEE--ETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC---CEEEECSSC---------EEEECSSSEEEEECTTTC
T ss_pred EEEE--eCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc---eEEeeCCCE---------EEEECCCCeEEEEeCCCC
Confidence 1111 12333333356899999999999999999865432 233355655 555555667754444332
Q ss_pred ceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEe-cCCeEEEEeC-CCCeeEEEecC------------Cc
Q 043350 415 NAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGC-TNGLLVQWDG-NGNRVSDILHH------------QC 480 (1133)
Q Consensus 415 ~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs-~DG~I~vWd~-~g~~l~~~~~h------------~~ 480 (1133)
.. +..+....++. .-..++.+.+. +|.|+... .+..|.+.|. +|+.+..+... ..
T Consensus 135 ~~-------~~~I~V~~~g~---~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~ 203 (243)
T 3mbr_X 135 QQ-------VGSIKVTAGGR---PLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTN 203 (243)
T ss_dssp CE-------EEEEECEETTE---ECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTS
T ss_pred eE-------EEEEEEccCCc---ccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcC
Confidence 22 12222211111 01223344443 56555444 5778999999 77887777532 12
Q ss_pred ceeE---EecCCCEEEEEe
Q 043350 481 AVQC---FCTYGSRMYVGY 496 (1133)
Q Consensus 481 ~V~~---fs~dg~~Lasgs 496 (1133)
.|.. ++|+++.|++.+
T Consensus 204 ~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 204 DVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp SCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEEcCCCCEEEEEC
Confidence 2333 888888777766
No 323
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=93.86 E-value=11 Score=42.85 Aligned_cols=213 Identities=8% Similarity=-0.083 Sum_probs=108.5
Q ss_pred cccCCCCCEE-EEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eC-CCCeEE--ecCCcEEEeeCC
Q 043350 109 KPFQPMVEFI-GSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CT-DTQLWA--GQECGVRFWNLE 183 (1133)
Q Consensus 109 ~~~~p~g~~l-asgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~-dg~lla--s~Dg~VrvWdl~ 183 (1133)
+.+++....| .+-...+.|+.++.............+..... ....|+ .. ++.++. ...+.|.+.+++
T Consensus 117 l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~-------~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 117 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ-------APDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCS-------CEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred EeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCC-------CcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 5566654444 44455667777766521100111112221112 455666 43 555444 567788888887
Q ss_pred CCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEe-C-CCeEEEEeCCCCCCCCCCCccccccc-cc
Q 043350 184 DSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGH-K-DGKIRSWKMDQTLDDANNPFKEGLSW-QA 260 (1133)
Q Consensus 184 ~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs-~-Dg~V~vWd~~~~~~~~~~~~~~~~~l-~g 260 (1133)
+.... .+..........|+++|.+..|+... . .+.|...++++ .....+ ..
T Consensus 190 g~~~~-----------------~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG---------~~~~~~~~~ 243 (400)
T 3p5b_L 190 GVKRK-----------------TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG---------VDIYSLVTE 243 (400)
T ss_dssp TCSEE-----------------EEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS---------CSCEEEECS
T ss_pred CCceE-----------------EEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC---------CccEEEEEC
Confidence 63221 11112333468999999655554443 2 36788888876 222222 22
Q ss_pred CCCCeEEEEEeeCCc-E-EEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEE
Q 043350 261 HRGPVLAMIFSSQGD-L-WSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCM 338 (1133)
Q Consensus 261 H~~~V~sl~fsp~g~-L-~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l 338 (1133)
.-..-+.|++++++. | ++=+..+.|...|++............ ....+....+
T Consensus 244 ~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~-------------------------~l~~P~gl~v 298 (400)
T 3p5b_L 244 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK-------------------------RLAHPFSLAV 298 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSS-------------------------TTSSEEEEEE
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCC-------------------------CCCCCEEEEE
Confidence 234568999998766 4 444566788888876521111110000 0011211211
Q ss_pred EecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEe
Q 043350 339 LSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDT 381 (1133)
Q Consensus 339 ~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~ 381 (1133)
..+.+.+.....+.|..+|..+|+.+..+.........+.+
T Consensus 299 --~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 299 --FEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp --ETTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEE
T ss_pred --eCCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEE
Confidence 22333333345677888888888877777644443444433
No 324
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=93.85 E-value=3 Score=44.02 Aligned_cols=163 Identities=9% Similarity=0.003 Sum_probs=87.9
Q ss_pred eEEEEEeCCCCEEEEEeCCC--eEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeC
Q 043350 215 TMCLMVDCGNRLVWTGHKDG--KIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPW 290 (1133)
Q Consensus 215 V~~la~spd~~~LaSgs~Dg--~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl 290 (1133)
+..|.|++ +.+..+.+.+| .|+++|+.++.. +....- ............++ .+..-.++.+.++|.
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv--------~~~~~l-~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~ 92 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRI--------LQRAEV-PPPYFGAGIVAWRDRLIQLTWRNHEGFVYDL 92 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCE--------EEEEEC-CTTCCEEEEEEETTEEEEEESSSSEEEEEET
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEECCCCCE--------EEEEeC-CCCcceeEEEEeCCEEEEEEeeCCEEEEEEC
Confidence 55788886 56666666654 899999987221 111111 12223333333455 444457899999999
Q ss_pred CCC--ceeeEeC-------CCCceEEEEeecce--EEEccCceeeecccc----CCCCCeEEEEecCCceEEEecCCCce
Q 043350 291 ESI--EKSLSLK-------PEEKHMAALLVERS--FIDLRAQVTVNGACS----ISSTEIKCMLSDHARARVWCAQPLSF 355 (1133)
Q Consensus 291 ~~~--~~~l~~~-------~~~~~l~s~~~d~s--~~d~~~~~~v~~~~~----~~~~~~~~l~S~d~~i~vwss~d~~I 355 (1133)
.+. ...+... .++..+.....+.. .+|..+...+..+.- .+-....-+-..++.+.+-...+..|
T Consensus 93 ~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I 172 (243)
T 3mbr_X 93 ATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRI 172 (243)
T ss_dssp TTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEE
T ss_pred CcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeE
Confidence 873 2333322 23333333322222 444444332222211 01111122222355544433457899
Q ss_pred eEeecCCCceeEEEecC-------------CcceeEEEeCCCCCc
Q 043350 356 SLWDARSKELLKVFNIE-------------GHIENRVDTQSVQDQ 387 (1133)
Q Consensus 356 ~lWD~~tg~~l~~~~~h-------------~~~v~~l~~sp~g~~ 387 (1133)
.+.|..+|+.+..+... ....+.++++|+++.
T Consensus 173 ~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~ 217 (243)
T 3mbr_X 173 ARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDR 217 (243)
T ss_dssp EEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTE
T ss_pred EEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCE
Confidence 99999999999988632 124679999997664
No 325
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=93.79 E-value=13 Score=43.48 Aligned_cols=64 Identities=9% Similarity=0.027 Sum_probs=41.6
Q ss_pred CCCCeEEEEEeC-CCCEEEEEeC-CCeEEEEeCCCCCCCCCCCccccccccc----CCCCeEEEEE-------eeCCc-E
Q 043350 211 NTSPTMCLMVDC-GNRLVWTGHK-DGKIRSWKMDQTLDDANNPFKEGLSWQA----HRGPVLAMIF-------SSQGD-L 276 (1133)
Q Consensus 211 h~s~V~~la~sp-d~~~LaSgs~-Dg~V~vWd~~~~~~~~~~~~~~~~~l~g----H~~~V~sl~f-------sp~g~-L 276 (1133)
.+.....|+|+| +...|+.+.. .+.|++.|+.. ..+..+.. .......|+| +++|+ |
T Consensus 137 ~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~---------~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~l 207 (496)
T 3kya_A 137 GFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKN---------RMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYM 207 (496)
T ss_dssp CCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTT---------TEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEE
T ss_pred ccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCC---------CEEEEEEccCccccCCCcEEEEeecccccCCCCCEE
Confidence 345678999998 3555555544 46788888776 33333322 2235789999 99998 7
Q ss_pred EEEeCCC
Q 043350 277 WSGGEGG 283 (1133)
Q Consensus 277 ~Sgs~Dg 283 (1133)
+.+...+
T Consensus 208 yvad~~~ 214 (496)
T 3kya_A 208 IVAIDYD 214 (496)
T ss_dssp EEEECCC
T ss_pred EEEeCCC
Confidence 7776554
No 326
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=93.77 E-value=16 Score=44.34 Aligned_cols=352 Identities=9% Similarity=0.040 Sum_probs=172.9
Q ss_pred cccCCCCCEE-EEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-e-CCCCeEE--ecCCcEEEeeCC
Q 043350 109 KPFQPMVEFI-GSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-C-TDTQLWA--GQECGVRFWNLE 183 (1133)
Q Consensus 109 ~~~~p~g~~l-asgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s-~dg~lla--s~Dg~VrvWdl~ 183 (1133)
+.|++....| .+-..++.|..++.+ +......+..-.. ....|+ . ..+.++. ...+.|.+.+++
T Consensus 42 l~~d~~~~~lywtD~~~~~I~r~~~~----g~~~~~v~~~g~~-------~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d 110 (628)
T 4a0p_A 42 LDFDVTDNRIYWTDISLKTISRAFMN----GSALEHVVEFGLD-------YPEGMAVDWLGKNLYWADTGTNRIEVSKLD 110 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETT----SCSCEEEECSSCS-------CCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEECCCCEEEEEECCCCeEEEEECC----CCCcEEEEeCCCC-------CcceEEEEeCCCEEEEEECCCCEEEEEecC
Confidence 5677755554 455667888887776 4331222221111 234555 3 3454444 556788888887
Q ss_pred CCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeC--CCeEEEEeCCCCCCCCCCCcccccccccC
Q 043350 184 DSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHK--DGKIRSWKMDQTLDDANNPFKEGLSWQAH 261 (1133)
Q Consensus 184 ~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~--Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH 261 (1133)
+..... ...........|+++|....|+-... .+.|...++++ .....+...
T Consensus 111 G~~~~~-----------------l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG---------~~~~~l~~~ 164 (628)
T 4a0p_A 111 GQHRQV-----------------LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDG---------SERTTLVPN 164 (628)
T ss_dssp STTCEE-----------------EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS---------CSCEEEECS
T ss_pred CCcEEE-----------------EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCC---------CceEEEECC
Confidence 642210 11122334589999995545544442 46777778876 222222233
Q ss_pred CCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEE
Q 043350 262 RGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCML 339 (1133)
Q Consensus 262 ~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~ 339 (1133)
-..-+.|++++++. .++=...+.|...+++.....+.... ...+....+
T Consensus 165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~----------------------------l~~P~glav- 215 (628)
T 4a0p_A 165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADD----------------------------LPHPFGLTQ- 215 (628)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC----------------------------CSCEEEEEE-
T ss_pred CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeecc----------------------------CCCceEEEE-
Confidence 45678999999766 45556677888888865221111000 011111111
Q ss_pred ecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEe-CCCCCc----ccc----cc-ceE-----EEEeeCCCC
Q 043350 340 SDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDT-QSVQDQ----PVE----DE-MKV-----KFVSSNKKE 404 (1133)
Q Consensus 340 S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~-sp~g~~----~~e----~e-~~v-----~lasgs~Dg 404 (1133)
..+.+.+.....+.|...|..+|+....+.........+.+ ++..+. ... -+ ..+ ...+.+..|
T Consensus 216 -~~~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g 294 (628)
T 4a0p_A 216 -YQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAH 294 (628)
T ss_dssp -ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTT
T ss_pred -ECCEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCC
Confidence 12233322344566666676666555554433222222222 111000 000 00 000 011112222
Q ss_pred ccccccccc-----cceeeccCCceEEEEEecCC----cc-cCCCCCEEEEEECCCC--eEEEEecCCeEEEEeCCCCee
Q 043350 405 KPHGFLQRS-----RNAIMGAADAVRRVATRGAG----AF-VDDTKRTEAMVLTADG--MIWSGCTNGLLVQWDGNGNRV 472 (1133)
Q Consensus 405 ~i~~~~~~~-----~~~~~~~~~~V~~v~~~p~g----~~-~~h~~~V~sl~~spdg--~L~sgs~DG~I~vWd~~g~~l 472 (1133)
.....+++. ...+......|..+...... .+ ...-..+.++.+.+.. .+++=...+.|+.++.+|...
T Consensus 295 ~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~ 374 (628)
T 4a0p_A 295 YSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG 374 (628)
T ss_dssp CEECTTSSCEECCSSEEEEEETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred cEecccCCcCccccceeeeeccceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCc
Confidence 211111110 01111222334443332111 01 1122457889998855 445555678899999877433
Q ss_pred EEEecC-------CcceeE--EecCCCEEE-EEecCCeEEEEeCCCCcceeee-ccccCeEEeeec
Q 043350 473 SDILHH-------QCAVQC--FCTYGSRMY-VGYVSGYLQILDLDGNLTASWI-AHSSPVLKLAVG 527 (1133)
Q Consensus 473 ~~~~~h-------~~~V~~--fs~dg~~La-sgs~DG~I~vwd~~g~~l~~~~-~H~~~V~~l~fs 527 (1133)
.++... ...+.. +...++.|+ +-+..+.|.+.+++|+....+. .......+|+++
T Consensus 375 ~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavd 440 (628)
T 4a0p_A 375 FTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVN 440 (628)
T ss_dssp EEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCEEEEEEECTTCCEEEEEEE
T ss_pred eEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCCCeEEEEEeCCCCceeeEEEe
Confidence 322211 123444 667666554 5567889999999987655443 234567888887
No 327
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=93.68 E-value=1.7 Score=48.16 Aligned_cols=150 Identities=15% Similarity=0.192 Sum_probs=86.8
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeee-ccCCCccccccceEEEEE-eCCCCeEE-ecCCcEEEeeCCCC
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLEL-RPHPLKETQAGRFLRNIA-CTDTQLWA-GQECGVRFWNLEDS 185 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l-~~H~~~~~~~g~~V~~v~-s~dg~lla-s~Dg~VrvWdl~~~ 185 (1133)
+.+.|++.+++.+...+.++-+|.. +.. -..+ .+... .+..+. .+++.+++ +.+|.+++++.+..
T Consensus 168 ~~~~~~~~~~~~g~~G~~~~S~d~g----G~t-W~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G 235 (327)
T 2xbg_A 168 LNRSPSGEYVAVSSRGSFYSTWEPG----QTA-WEPHNRTTSR-------RLHNMGFTPDGRLWMIVNGGKIAFSDPDNS 235 (327)
T ss_dssp EEECTTSCEEEEETTSSEEEEECTT----CSS-CEEEECCSSS-------CEEEEEECTTSCEEEEETTTEEEEEETTEE
T ss_pred EEEcCCCcEEEEECCCcEEEEeCCC----CCc-eeECCCCCCC-------ccceeEECCCCCEEEEeCCceEEEecCCCC
Confidence 5567888888888766666666542 221 1111 12222 677777 78888888 77888877643211
Q ss_pred CCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCe
Q 043350 186 YEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPV 265 (1133)
Q Consensus 186 ~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V 265 (1133)
.++.... .+. ..+...+.++++.+++.++++|. +|.| .+..+.+. .+..+.....+...+
T Consensus 236 -~tW~~~~----------~~~--~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~-----tW~~~~~~~~~~~~~ 295 (327)
T 2xbg_A 236 -ENWGELL----------SPL--RRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQ-----TWQQDVDVKKVPSNF 295 (327)
T ss_dssp -EEECCCB----------CTT--SSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTS-----SCEECGGGTTSSSCC
T ss_pred -CeeEecc----------CCc--ccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCc-----ccEEcCccCCCCCCe
Confidence 0110000 000 00112578899988777766654 6766 45555422 233332222344678
Q ss_pred EEEEEeeCCcEEEEeCCCcEEEEeC
Q 043350 266 LAMIFSSQGDLWSGGEGGVIKIWPW 290 (1133)
Q Consensus 266 ~sl~fsp~g~L~Sgs~DgtI~iWdl 290 (1133)
.+|.|.+++.++.++.+|+|.-++-
T Consensus 296 ~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 296 YKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp CEEEEEETTEEEEECSTTEEEEECC
T ss_pred EEEEEECCCceEEEcCCceEEEEcC
Confidence 8999986666888889998776653
No 328
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=93.36 E-value=11 Score=41.33 Aligned_cols=102 Identities=10% Similarity=0.112 Sum_probs=61.9
Q ss_pred eEEecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCCC
Q 043350 169 LWAGQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCG-NRLVWTGHKDGKIRSWKMDQTLDD 247 (1133)
Q Consensus 169 llas~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd-~~~LaSgs~Dg~V~vWd~~~~~~~ 247 (1133)
+|.+....|+..++++..... . ........+..++|++. +.+.++-...+.|..+++++...
T Consensus 7 ll~~~~~~I~~i~l~~~~~~~---------------~-~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~- 69 (318)
T 3sov_A 7 LLYANRRDLRLVDATNGKENA---------------T-IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES- 69 (318)
T ss_dssp EEEECEEEEEEEETTCTTSCC---------------E-EEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC-
T ss_pred EEEEccCeEEEEECCCCceEE---------------E-EEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc-
Confidence 344777789999887642110 0 11111234678999984 55666766778999999886211
Q ss_pred CCCCcccccccccCCCCeEEEEEeeCC-c-EEEEeCCCcEEEEeCCCC
Q 043350 248 ANNPFKEGLSWQAHRGPVLAMIFSSQG-D-LWSGGEGGVIKIWPWESI 293 (1133)
Q Consensus 248 ~~~~~~~~~~l~gH~~~V~sl~fsp~g-~-L~Sgs~DgtI~iWdl~~~ 293 (1133)
.. ..+...-....++++.+.+ . .++-...+.|.+.+++..
T Consensus 70 -----~~-~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~ 111 (318)
T 3sov_A 70 -----VQ-NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS 111 (318)
T ss_dssp -----CC-EEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred -----eE-EEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCC
Confidence 11 1112222346688998754 4 566667788999988753
No 329
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=93.36 E-value=12 Score=41.63 Aligned_cols=109 Identities=14% Similarity=0.052 Sum_probs=65.3
Q ss_pred eEEEEE-e-CCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCC-CCEEEEEeC
Q 043350 158 FLRNIA-C-TDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCG-NRLVWTGHK 232 (1133)
Q Consensus 158 ~V~~v~-s-~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd-~~~LaSgs~ 232 (1133)
....++ . .++.++. ...+.|..+++++.... .+..........+++++. +.+.++-..
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-----------------~~~~~~~~~p~glavd~~~g~ly~~d~~ 136 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-----------------EVVSTGLESPGGLAVDWVHDKLYWTDSG 136 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-----------------EEECSSCSCCCEEEEETTTTEEEEEETT
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEecCCCCce-----------------EEEeCCCCCccEEEEecCCCeEEEEcCC
Confidence 456777 5 3555554 55678888888763211 011112223468899874 555566667
Q ss_pred CCeEEEEeCCCCCCCCCCCccccccc-ccCCCCeEEEEEeeCCc--EEEEeCC-CcEEEEeCCC
Q 043350 233 DGKIRSWKMDQTLDDANNPFKEGLSW-QAHRGPVLAMIFSSQGD--LWSGGEG-GVIKIWPWES 292 (1133)
Q Consensus 233 Dg~V~vWd~~~~~~~~~~~~~~~~~l-~gH~~~V~sl~fsp~g~--L~Sgs~D-gtI~iWdl~~ 292 (1133)
.+.|.+.++++ .....+ ...-..-..|++.|.+. .++-... +.|...+++.
T Consensus 137 ~~~I~~~~~dG---------~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 137 TSRIEVANLDG---------AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp TTEEEEEETTS---------CSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CCeEEEEcCCC---------CceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 78999999886 211122 22334568999998655 5555444 6777777764
No 330
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=93.19 E-value=0.2 Score=52.96 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=27.6
Q ss_pred cceeEEEEEEEcCeEEEEEecccccChHHHHHHHHHHHHHHHhC
Q 043350 696 NKGGVGLRIRVYDRTICFVNCHLAAHLEAVNRRNADYDHIYRNM 739 (1133)
Q Consensus 696 nKG~v~~r~~~~~~~~~fvn~Hlaa~~~~~~~Rn~d~~~i~~~~ 739 (1133)
....++||+ ..+.|.|.|+.|.-++ .|.+....|.+.+
T Consensus 130 ~Rp~lgiri----~~~~ff~tHa~a~~g~--da~a~v~~I~~~~ 167 (262)
T 2f1n_A 130 GRPLLGIRI----GNDAFFTAHAIAMRNN--DAPALVEEVYNFF 167 (262)
T ss_dssp CCCEEEEEE----TTEEEEEEECCSSSSC--SHHHHHHHHHHHH
T ss_pred CCceEEEEE----CCEEEEEEEecCCCCc--cHHHHHHHHHHHH
Confidence 788888888 2599999999997332 2566677776643
No 331
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=92.71 E-value=5.3 Score=46.15 Aligned_cols=149 Identities=9% Similarity=0.030 Sum_probs=82.8
Q ss_pred ccccCC-CCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eCCCC-eEEec--CC----cEE
Q 043350 108 HKPFQP-MVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CTDTQ-LWAGQ--EC----GVR 178 (1133)
Q Consensus 108 ~~~~~p-~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~dg~-llas~--Dg----~Vr 178 (1133)
.+.++| ++..|..+...+.|+.++.. +.. +..+..... ....|+ .++|+ ++++. .+ .+.
T Consensus 141 ~lavdp~~~g~Lyv~d~~~~I~~id~~----~~~-v~~~~~~~~-------~P~~ia~d~~G~~lyvad~~~~~~~~~v~ 208 (430)
T 3tc9_A 141 WLSFDPKNHNHLYLVGEQHPTRLIDFE----KEY-VSTVYSGLS-------KVRTICWTHEADSMIITNDQNNNDRPNNY 208 (430)
T ss_dssp EEEEETTEEEEEEEEEBTEEEEEEETT----TTE-EEEEECCCS-------CEEEEEECTTSSEEEEEECCSCTTSEEEE
T ss_pred EEEECCCCCCeEEEEeCCCcEEEEECC----CCE-EEEEecCCC-------CcceEEEeCCCCEEEEEeCCCCcccceEE
Confidence 466777 34445544443777777776 433 333332222 567788 88887 55522 12 233
Q ss_pred EeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccc
Q 043350 179 FWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDC-GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLS 257 (1133)
Q Consensus 179 vWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~sp-d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~ 257 (1133)
+.+..+.... ..... ......+++++| ++.++++-..++.|..++.++... ..+..
T Consensus 209 ~~~~~g~~~~----------------~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~------~~~~~ 265 (430)
T 3tc9_A 209 ILTRESGFKV----------------ITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET------TPLFT 265 (430)
T ss_dssp EEEGGGTSCS----------------EEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE------EEEEE
T ss_pred EEeCCCceee----------------eeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE------EEEEE
Confidence 3332222110 00111 123457788999 677777766778999999875110 11111
Q ss_pred cccCCCCeEEEEEeeCCc-EE-EEeCCCcEEEEeCCC
Q 043350 258 WQAHRGPVLAMIFSSQGD-LW-SGGEGGVIKIWPWES 292 (1133)
Q Consensus 258 l~gH~~~V~sl~fsp~g~-L~-Sgs~DgtI~iWdl~~ 292 (1133)
... ...-+.|+|+|+|+ |+ +-...+.|..++.+.
T Consensus 266 ~~~-~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 266 IQD-SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp CSS-SSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred cCC-CCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 111 23457899999999 54 445678888887653
No 332
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=92.44 E-value=24 Score=42.69 Aligned_cols=353 Identities=9% Similarity=0.021 Sum_probs=169.8
Q ss_pred cccCCCCCEEE-EecCCCeEEeccCCCCCCCCCC-eeeeccCCCccccccceEEEEE-eC-CCCeEE--ecCCcEEEeeC
Q 043350 109 KPFQPMVEFIG-SGGGTGIFKVPSRAAVHPGRPP-CLELRPHPLKETQAGRFLRNIA-CT-DTQLWA--GQECGVRFWNL 182 (1133)
Q Consensus 109 ~~~~p~g~~la-sgs~dg~irlW~~~~~~~g~~~-~~~l~~H~~~~~~~g~~V~~v~-s~-dg~lla--s~Dg~VrvWdl 182 (1133)
+.|++.+..|. +-...+.|..++.+ +... ...+..--. ....++ .. ++.++. ...+.|.+.++
T Consensus 45 ld~~~~~~~ly~sD~~~~~I~r~~~~----g~~~~~~v~~~~~~-------~P~GlAvD~~~~~ly~~d~~~~~I~v~~~ 113 (619)
T 3s94_A 45 VDFVFSHGLIYWSDVSEEAIKRTEFN----KTESVQNVVVSGLL-------SPDGLACDWLGEKLYWTDSETNRIEVSNL 113 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEC---------CEEEECSSCS-------CEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEEEeCCCEEEEEECCCCeEEEEEcc----CCCceEEEEeCCCC-------CcCeEEEEecCCEEEEEeCCCCEEEEEEC
Confidence 45676555444 44455677777766 3210 122222112 456777 54 454444 56788999998
Q ss_pred CCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeC--CCeEEEEeCCCCCCCCCCCcccccccc-
Q 043350 183 EDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHK--DGKIRSWKMDQTLDDANNPFKEGLSWQ- 259 (1133)
Q Consensus 183 ~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~--Dg~V~vWd~~~~~~~~~~~~~~~~~l~- 259 (1133)
++..... +..........|+++|.+..|+.... .+.|...++++ .....+.
T Consensus 114 dG~~~~~-----------------l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG---------~~~~~l~~ 167 (619)
T 3s94_A 114 DGSLRKV-----------------LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG---------SSRFIIIN 167 (619)
T ss_dssp TSCSCEE-----------------EECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS---------CSCEEEEC
T ss_pred CCCCEEE-----------------EEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC---------CceEEEEe
Confidence 8743211 11122234578999996555544443 35666667776 1111221
Q ss_pred cCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCCCceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEE
Q 043350 260 AHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWESIEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKC 337 (1133)
Q Consensus 260 gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~ 337 (1133)
..-..-++|++++++. .++=+..+.|...+++........... ...+..+.
T Consensus 168 ~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~---------------------------~~~P~gi~ 220 (619)
T 3s94_A 168 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS---------------------------LPHPFALT 220 (619)
T ss_dssp SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------------------------------------CCCEE
T ss_pred CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC---------------------------CCCceEEE
Confidence 2234568999998755 455456677888777652111100000 01111111
Q ss_pred EEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEEeC-CC----CCcccccc--c--eEEEE--------ee
Q 043350 338 MLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVDTQ-SV----QDQPVEDE--M--KVKFV--------SS 400 (1133)
Q Consensus 338 l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~s-p~----g~~~~e~e--~--~v~la--------sg 400 (1133)
+ ....+.+.....+.|...|..+|+....+.........+.+. +. +....... . -+.+. +.
T Consensus 221 ~--~~~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~ 298 (619)
T 3s94_A 221 L--FEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCA 298 (619)
T ss_dssp E--SSSEEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEE
T ss_pred E--eCCEEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEe
Confidence 1 111222222456677777777776555544332222233321 11 10000000 0 01111 12
Q ss_pred CCCCcccccccc------ccceeeccCCceEEEEEecCCc----c-cCCCCCEEEEEECCC-C-eEEEEecCCeEEEEeC
Q 043350 401 NKKEKPHGFLQR------SRNAIMGAADAVRRVATRGAGA----F-VDDTKRTEAMVLTAD-G-MIWSGCTNGLLVQWDG 467 (1133)
Q Consensus 401 s~Dg~i~~~~~~------~~~~~~~~~~~V~~v~~~p~g~----~-~~h~~~V~sl~~spd-g-~L~sgs~DG~I~vWd~ 467 (1133)
+.+|....-+++ ....+......++.+.+.+... + ...-..+.++++.+. + .+++-...+.|+.++.
T Consensus 299 C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~ 378 (619)
T 3s94_A 299 CPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFI 378 (619)
T ss_dssp CCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCchheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEc
Confidence 222221111111 1111223334566665543221 1 112345778999874 4 4555556889999999
Q ss_pred CCCeeEEEec-CCcceeE--EecCCCEEE-EEecCCeEEEEeCCCCcceeeec-cccCeEEeeec
Q 043350 468 NGNRVSDILH-HQCAVQC--FCTYGSRMY-VGYVSGYLQILDLDGNLTASWIA-HSSPVLKLAVG 527 (1133)
Q Consensus 468 ~g~~l~~~~~-h~~~V~~--fs~dg~~La-sgs~DG~I~vwd~~g~~l~~~~~-H~~~V~~l~fs 527 (1133)
+|.....+.. ....... +.+.+..|+ +-+..+.|.+.++.|+....+.. .-....+|+++
T Consensus 379 ~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavd 443 (619)
T 3s94_A 379 DGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLD 443 (619)
T ss_dssp TSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEE
T ss_pred CCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEE
Confidence 8744333332 2223333 666555444 44567899999999875544443 23456778887
No 333
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=91.94 E-value=12 Score=46.69 Aligned_cols=108 Identities=11% Similarity=0.020 Sum_probs=64.4
Q ss_pred EEEEE-eC-CCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEe-CC
Q 043350 159 LRNIA-CT-DTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGH-KD 233 (1133)
Q Consensus 159 V~~v~-s~-dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs-~D 233 (1133)
...|+ .. .+.++. ...+.|.+.++++.... .+..........|+++|.+..|+... ..
T Consensus 473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~-----------------~l~~~~l~~P~gIaVDp~~g~LYwtD~g~ 535 (791)
T 3m0c_C 473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-----------------TLFRENGSKPRAIVVDPVHGFMYWTDWGT 535 (791)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEE-----------------EEEECTTCCEEEEEEETTTTEEEEEECSS
T ss_pred cceeeeeecCCcEEEEecCCCeEEEEeCCCCeEE-----------------EEEeCCCCCcceEEEecCCCCEEEecCCC
Confidence 34556 33 444444 66778999888764221 11222334578999999755554443 33
Q ss_pred -CeEEEEeCCCCCCCCCCCcccccccc-cCCCCeEEEEEeeCCc-E-EEEeCCCcEEEEeCCC
Q 043350 234 -GKIRSWKMDQTLDDANNPFKEGLSWQ-AHRGPVLAMIFSSQGD-L-WSGGEGGVIKIWPWES 292 (1133)
Q Consensus 234 -g~V~vWd~~~~~~~~~~~~~~~~~l~-gH~~~V~sl~fsp~g~-L-~Sgs~DgtI~iWdl~~ 292 (1133)
+.|.+.++++ .....+. ..-..-+.|++.+.+. | ++=...+.|...+++.
T Consensus 536 ~~~I~~~~~dG---------~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 536 PAKIKKGGLNG---------VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp SCEEEEEETTS---------CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCeEEEEecCC---------CceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 6788888876 2222222 2235678999997655 4 4445566788887765
No 334
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=91.93 E-value=3.1 Score=52.02 Aligned_cols=106 Identities=15% Similarity=0.002 Sum_probs=58.4
Q ss_pred CEEEEEECCCC-eEEEEec---CCeEEEEeCCCC--ee--EEEec-CCcceeEEe-cCCCEEEEEe-cC----CeEEEEe
Q 043350 441 RTEAMVLTADG-MIWSGCT---NGLLVQWDGNGN--RV--SDILH-HQCAVQCFC-TYGSRMYVGY-VS----GYLQILD 505 (1133)
Q Consensus 441 ~V~sl~~spdg-~L~sgs~---DG~I~vWd~~g~--~l--~~~~~-h~~~V~~fs-~dg~~Lasgs-~D----G~I~vwd 505 (1133)
....+.++||| +|+..+. ...|.++|+.+. .. ..+.. ......... .+|+.|+..+ .+ ..|.++|
T Consensus 272 ~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d 351 (751)
T 2xe4_A 272 FSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAP 351 (751)
T ss_dssp CEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEE
T ss_pred eEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEc
Confidence 45677899999 6655442 345778888442 22 33332 233333332 3366555444 33 3677777
Q ss_pred CCC-Cccee-eecccc--CeEEeeec-ccceeeecccCCeeecccc
Q 043350 506 LDG-NLTAS-WIAHSS--PVLKLAVG-VDHIYSLAAHGGIRGWTFT 546 (1133)
Q Consensus 506 ~~g-~~l~~-~~~H~~--~V~~l~fs-~~~L~S~s~Dg~I~lW~l~ 546 (1133)
+.+ ..... +..|.. .+..+.+. +..+++...+|..++|-+.
T Consensus 352 ~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~d 397 (751)
T 2xe4_A 352 RGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMM 397 (751)
T ss_dssp TTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEE
T ss_pred CCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEe
Confidence 763 23334 445543 35566666 5556667777876665543
No 335
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=91.06 E-value=18 Score=38.40 Aligned_cols=66 Identities=6% Similarity=0.036 Sum_probs=46.6
Q ss_pred CCEEEEEECCCC--eEEEEecCCeEEEEeCCCCeeEEEecCCc-----------ceeEEecCCCEEEEEecCCeEEEEeC
Q 043350 440 KRTEAMVLTADG--MIWSGCTNGLLVQWDGNGNRVSDILHHQC-----------AVQCFCTYGSRMYVGYVSGYLQILDL 506 (1133)
Q Consensus 440 ~~V~sl~~spdg--~L~sgs~DG~I~vWd~~g~~l~~~~~h~~-----------~V~~fs~dg~~Lasgs~DG~I~vwd~ 506 (1133)
..+.++++.|.. +++.......|..+|.+|+.+..+.-..+ .=.+|.++|+ |++.+.-..++++..
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEe
Confidence 346788888876 67777788899999999987666544321 1123888887 666687777777764
No 336
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=90.97 E-value=0.37 Score=50.47 Aligned_cols=59 Identities=8% Similarity=0.149 Sum_probs=47.1
Q ss_pred EEecCeEEecccceEEEEEEECCccceEEEEEeecCCCcccCCCCCCccccCCCcCCCCceEEecCceEECCCCeEEEEE
Q 043350 958 IVSTESIILQNQDTCTLRITNKSAQEKAIFKIICDGQSTVKDDGDASDYRLRGSFGFPRWLEVTPAAGVIKPDSYIEVSV 1037 (1133)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~i~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~p~~~~~~p~~~~~~~~ 1037 (1133)
.++|+.|.-+......++|+|+|.. |..++++. .|+|+.+++..+.|.|||+.+|.+
T Consensus 9 ~idFg~v~~g~~~~~~~~i~N~g~~-pl~i~~~~----------------------~p~~~~~~~~~~~I~PG~~g~I~v 65 (220)
T 2qsv_A 9 RLLFPISMPEDEGVVRLVVNNTDES-DLQVAVVS----------------------LPSFVSLDDRAFRLQAREPRELNL 65 (220)
T ss_dssp EEECCSBCTTCCCEEEEEEEECSSS-CEEEEEEE----------------------CCTTEECSCCEEEECSSSCEEEEE
T ss_pred eeEcccccCCCcceEEEEEEeCCCC-ceEEEecc----------------------CCCceEeeeCcceeCCCCceEEEE
Confidence 4455555555566788999999998 88888752 368899999999999999999999
Q ss_pred EE
Q 043350 1038 HH 1039 (1133)
Q Consensus 1038 ~~ 1039 (1133)
+.
T Consensus 66 t~ 67 (220)
T 2qsv_A 66 SL 67 (220)
T ss_dssp EE
T ss_pred EE
Confidence 95
No 337
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=90.74 E-value=1.3 Score=54.75 Aligned_cols=106 Identities=9% Similarity=0.019 Sum_probs=59.4
Q ss_pred EEE-e-CCCCeEE--ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEe-CC-C
Q 043350 161 NIA-C-TDTQLWA--GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGH-KD-G 234 (1133)
Q Consensus 161 ~v~-s-~dg~lla--s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs-~D-g 234 (1133)
.|+ . .++.+++ ...+.|.+.++.+..... +..........|+++|.+..|+.+. .. +
T Consensus 457 glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~-----------------l~~~~~~~P~giavDp~~g~ly~td~~~~~ 519 (699)
T 1n7d_A 457 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT-----------------LFREQGSKPRAIVVDPVHGFMYWTDWGTPA 519 (699)
T ss_dssp CEECCCSSSBCEECCTTTSCEEEEBSSSCCEEE-----------------ECCCSSCCCCCEECCSSSSCCEECCCSSSC
T ss_pred eEEEEeeCCcEEEEeccCCeEEEEecCCCceEE-----------------EEeCCCCCcceEEEccCCCcEEEcccCCCC
Confidence 445 3 4555555 567789998877632110 0111122346778888555444333 22 6
Q ss_pred eEEEEeCCCCCCCCCCCcccccccc-cCCCCeEEEEEeeCCc--EEEEeCCCcEEEEeCCC
Q 043350 235 KIRSWKMDQTLDDANNPFKEGLSWQ-AHRGPVLAMIFSSQGD--LWSGGEGGVIKIWPWES 292 (1133)
Q Consensus 235 ~V~vWd~~~~~~~~~~~~~~~~~l~-gH~~~V~sl~fsp~g~--L~Sgs~DgtI~iWdl~~ 292 (1133)
.|.+.++++ .....+. ..-..-+.|+|+|++. .++-+..+.|..++++.
T Consensus 520 ~I~~~~~dG---------~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 520 KIKKGGLNG---------VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp CEEBCCSSS---------CCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred eEEEEeCCC---------CCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 777777765 1111111 1123456899998866 55556677888888764
No 338
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=90.68 E-value=23 Score=39.07 Aligned_cols=214 Identities=12% Similarity=0.131 Sum_probs=112.4
Q ss_pred cCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEEeCCCCeEE-ecCCcEEEeeCCCCC---
Q 043350 111 FQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIACTDTQLWA-GQECGVRFWNLEDSY--- 186 (1133)
Q Consensus 111 ~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~s~dg~lla-s~Dg~VrvWdl~~~~--- 186 (1133)
-+|....||--. ..++.++++++ ...++.|...+ .|.-=..-+...|+ -.+..|.-|++.+..
T Consensus 74 MnP~~~ViALra-g~~LQiFnlet-------K~klks~~~~e-----~VvfWkWis~~~L~lVT~taVyHWs~~~~s~P~ 140 (365)
T 2xzh_A 74 MNPASKVIALKA-GKTLQIFNIEM-------KSKMKAHTMTD-----DVTFWKWISLNTVALVTDNAVYHWSMEGESQPV 140 (365)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTT-------TEEEEEEECSS-----CEEEEEECSSSEEEEEESSEEEEEESSTTCCCE
T ss_pred eCCCccEEEEec-CCeEEEechHH-------hhhhcceecCC-----ccEEEEecCCCeEEEEcCCcEEEEcccCCCCCc
Confidence 378888888765 57899999983 33556665533 34322244555666 778899999987621
Q ss_pred CcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeC-------CCeEEEEeCCCCCCCCCCCcccccccc
Q 043350 187 EPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHK-------DGKIRSWKMDQTLDDANNPFKEGLSWQ 259 (1133)
Q Consensus 187 ~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~-------Dg~V~vWd~~~~~~~~~~~~~~~~~l~ 259 (1133)
+.+..|. ......|..-..+++.++++..+- .|.+.+|..+. +..+.+.
T Consensus 141 kvFdR~~---------------~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er---------~~sQ~ie 196 (365)
T 2xzh_A 141 KMFDRHS---------------SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR---------KVSQPIE 196 (365)
T ss_dssp EEEECCG---------------GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT---------TEEEEEC
T ss_pred eeeecch---------------hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc---------cccceee
Confidence 1111111 111335666666778887654432 36788999887 6666788
Q ss_pred cCCCCeEEEEEeeCC--c-EEE-EeC---CCcEEEEeCCCC-ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCC
Q 043350 260 AHRGPVLAMIFSSQG--D-LWS-GGE---GGVIKIWPWESI-EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSIS 331 (1133)
Q Consensus 260 gH~~~V~sl~fsp~g--~-L~S-gs~---DgtI~iWdl~~~-~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~ 331 (1133)
||.+.-..+.+..+. . |++ +.. .+.+.|-++... ... .+-.+. ..++. +..-.
T Consensus 197 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~---~~f~kk---------~vdi~-------fppea 257 (365)
T 2xzh_A 197 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QPFPKK---------AVDVF-------FPPEA 257 (365)
T ss_dssp CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTC---CCCCCE---------EEEEC-------CCTTC
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCC---CCcccc---------cceee-------CCccc
Confidence 885443333222111 1 332 221 257777777432 000 000011 11111 00000
Q ss_pred CCCe--EEEEecCCceEEEecCCCceeEeecCCCceeEEEecCCcceeEEE
Q 043350 332 STEI--KCMLSDHARARVWCAQPLSFSLWDARSKELLKVFNIEGHIENRVD 380 (1133)
Q Consensus 332 ~~~~--~~l~S~d~~i~vwss~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~ 380 (1133)
..|. .+-++....+..--..-|.+++||+.+|.++..-....+.|...+
T Consensus 258 ~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta 308 (365)
T 2xzh_A 258 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTA 308 (365)
T ss_dssp TTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred cCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEec
Confidence 0111 111122111111123578999999999999887766666654333
No 339
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=88.72 E-value=11 Score=42.93 Aligned_cols=122 Identities=14% Similarity=0.151 Sum_probs=72.3
Q ss_pred EEEEE-eCCCCeEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeecc------CCCCeEEEEEeC---CCCEE
Q 043350 159 LRNIA-CTDTQLWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESA------NTSPTMCLMVDC---GNRLV 227 (1133)
Q Consensus 159 V~~v~-s~dg~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~------h~s~V~~la~sp---d~~~L 227 (1133)
+..+. +++|.+|| ..+.+|.|-.+.........-. . ......+.+.. ..++|..+.|+| .+..|
T Consensus 68 i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~--~---~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~L 142 (452)
T 3pbp_A 68 TFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVS--I---QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCI 142 (452)
T ss_dssp TCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHH--H---HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEE
T ss_pred eeEEEECCCCCEEEEecCCeEEEEEecCccccCcccc--c---ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeE
Confidence 45566 99999999 8899999998874221110000 0 00000111111 357899999999 56788
Q ss_pred EEEeCCCeEEEEeCCCCCCCCCCCcccc---cccccCCCCeEEEEEeeCCc-EEEEe--CCCcEE
Q 043350 228 WTGHKDGKIRSWKMDQTLDDANNPFKEG---LSWQAHRGPVLAMIFSSQGD-LWSGG--EGGVIK 286 (1133)
Q Consensus 228 aSgs~Dg~V~vWd~~~~~~~~~~~~~~~---~~l~gH~~~V~sl~fsp~g~-L~Sgs--~DgtI~ 286 (1133)
++=..|++||+||+........ .++.. ..+..+...|.+++|.++|- |+..+ .+|-|.
T Consensus 143 VVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 143 VVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp EEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred EEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEE
Confidence 9999999999999985221000 00000 11122346788888888655 65544 666654
No 340
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=88.24 E-value=36 Score=37.85 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=39.5
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeC----Cc---EE--EEeC--CCcEEEEeCC
Q 043350 223 GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQ----GD---LW--SGGE--GGVIKIWPWE 291 (1133)
Q Consensus 223 d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~----g~---L~--Sgs~--DgtI~iWdl~ 291 (1133)
...+++...+.+-+.++|+++ +.+..+.. +.++.|..-|. |+ |+ |.-. +++|.+++++
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~G---------~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iD 107 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLDG---------KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID 107 (355)
T ss_dssp GGCEEEEEETTTEEEEEETTS---------CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEEC
T ss_pred CccEEEEEcCCCCEEEEcCCC---------cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEEC
Confidence 456667667788999999987 66666653 56777766653 33 33 3334 6789999774
No 341
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=86.10 E-value=36 Score=39.06 Aligned_cols=130 Identities=12% Similarity=0.152 Sum_probs=73.5
Q ss_pred CceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCCCCccc----cccccccceeeccCCceEEEE
Q 043350 353 LSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPH----GFLQRSRNAIMGAADAVRRVA 428 (1133)
Q Consensus 353 ~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~----~~~~~~~~~~~~~~~~V~~v~ 428 (1133)
+.|+.+|+.++..... .........+++++++.+ +++........ .+.... +.. ....+.
T Consensus 162 ~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~l---------yVad~~~~~~~~gv~~~~~~~-----~~~-~~~~~~ 225 (433)
T 4hw6_A 162 DAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGDM---------VVVDDQSSDTNTGIYLFTRAS-----GFT-ERLSLC 225 (433)
T ss_dssp SCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCCE---------EEEECCSCTTSEEEEEECGGG-----TTC-CEEEEE
T ss_pred CCEEEEECCCCEEEEe-ecCCCCccEEEECCCCCE---------EEEcCCCCcccceEEEEECCC-----Cee-cccccc
Confidence 7888888877765543 334455779999999987 66654332111 011000 000 000011
Q ss_pred EecCCcccCCCCCEEEEEECC-CCeEE-EEecCCeEEEEeCC-CCeeEEEec-CCcc-e--eEEecCCCEEEEEe-cCCe
Q 043350 429 TRGAGAFVDDTKRTEAMVLTA-DGMIW-SGCTNGLLVQWDGN-GNRVSDILH-HQCA-V--QCFCTYGSRMYVGY-VSGY 500 (1133)
Q Consensus 429 ~~p~g~~~~h~~~V~sl~~sp-dg~L~-sgs~DG~I~vWd~~-g~~l~~~~~-h~~~-V--~~fs~dg~~Lasgs-~DG~ 500 (1133)
.......+++++ +|.|+ +-..++.|..++.. +.....+.. .... - .+|+|+|++|+.+. ..+.
T Consensus 226 ---------~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 226 ---------NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp ---------ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred ---------ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 112234567888 66555 44467889999995 654233322 1111 1 34999999666555 5789
Q ss_pred EEEEeCC
Q 043350 501 LQILDLD 507 (1133)
Q Consensus 501 I~vwd~~ 507 (1133)
|+.++..
T Consensus 297 I~~~~~d 303 (433)
T 4hw6_A 297 IYRVDYN 303 (433)
T ss_dssp EEEEEBC
T ss_pred EEEEeCC
Confidence 9998875
No 342
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=85.88 E-value=17 Score=40.06 Aligned_cols=156 Identities=12% Similarity=0.026 Sum_probs=92.2
Q ss_pred cccCC-CCCEEEEecCCCeEEeccCCCCCCCCCCeeee--cc--CCCccccccceEEEEEe----CCCCeEE-ec-----
Q 043350 109 KPFQP-MVEFIGSGGGTGIFKVPSRAAVHPGRPPCLEL--RP--HPLKETQAGRFLRNIAC----TDTQLWA-GQ----- 173 (1133)
Q Consensus 109 ~~~~p-~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l--~~--H~~~~~~~g~~V~~v~s----~dg~lla-s~----- 173 (1133)
..+++ .+.++++.-..|+|..|+.. +.. ...+ .+ |++.+.+ ....|.. +++.+|+ ..
T Consensus 18 ~~wd~~~g~~~vs~l~~g~V~~~~~~----~~~-~~~~~~~~~s~~g~~~~---~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 18 TIYDRTRQVFYQSNLYKGRIEVYNPK----TQS-HFNVVIDGASSNGDGEQ---QMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTT----TCC-EEEECCTTTCCSSCCSE---EEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred ccCcCCCCEEEEEeccCCEEEEEcCC----CCe-EEEEecCCccccCCCcc---eeeEEEEeccCCCCcEEEEEcccccc
Confidence 55555 56666666689999999876 322 2222 21 1121111 3455554 6788887 33
Q ss_pred ---------CCcEEEeeCC---CCCCcCcCCCccccCCCCCCCceeecc-------CCCCeEEEEEeCCCCEEEEEeCC-
Q 043350 174 ---------ECGVRFWNLE---DSYEPGAGIGGRVRRGDEDAAPFYESA-------NTSPTMCLMVDCGNRLVWTGHKD- 233 (1133)
Q Consensus 174 ---------Dg~VrvWdl~---~~~~~~~gh~~~v~~g~~~~~~~~~~~-------h~s~V~~la~spd~~~LaSgs~D- 233 (1133)
+..|..+|+. +....+..-- ...... .......++.+++|+.-++++.-
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL-----------~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~ 158 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNF-----------EKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGM 158 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEES-----------HHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESS
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecC-----------ccccccccccccccccCCceeEECCCCCEEEeCCCCC
Confidence 5678889987 3211110000 000000 12347899999999999999887
Q ss_pred CeEEEEeCCCCCCCCCCCccccccc------ccCCCCeEEEEEeeCCc-EEEEeCCCcEEEEeCCC
Q 043350 234 GKIRSWKMDQTLDDANNPFKEGLSW------QAHRGPVLAMIFSSQGD-LWSGGEGGVIKIWPWES 292 (1133)
Q Consensus 234 g~V~vWd~~~~~~~~~~~~~~~~~l------~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~ 292 (1133)
+.|...+.++ +.+..+ ....-..+.|+++|+|. |+....+|.|..+|+..
T Consensus 159 ~~I~rV~pdG---------~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 159 PAIARVSADG---------KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CEEEEECTTS---------CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CeEEEEeCCC---------CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 7766666665 211111 11233467999999999 76665699999999874
No 343
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=85.46 E-value=30 Score=38.43 Aligned_cols=182 Identities=10% Similarity=0.086 Sum_probs=101.8
Q ss_pred cCCCceeEeecCCCceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeCC--CCccccc--cc--cccceeeccCCc
Q 043350 350 AQPLSFSLWDARSKELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSNK--KEKPHGF--LQ--RSRNAIMGAADA 423 (1133)
Q Consensus 350 s~d~~I~lWD~~tg~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs~--Dg~i~~~--~~--~~~~~~~~~~~~ 423 (1133)
...+.+.+||+ +|+.++.+.. ..++.++.-|.-.+ ....+-+-+++.-. ++++..| +. ..+..+.....+
T Consensus 47 ~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l-~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~p 122 (355)
T 3amr_A 47 NKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPL-NGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHP 122 (355)
T ss_dssp ETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEE-TTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSC
T ss_pred cCCCCEEEEcC-CCcEEEEccC--CCcccEEEeccccc-CCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccC
Confidence 45678999999 9999998864 45666666663211 00001111333333 3555422 21 111111000000
Q ss_pred eEEEEEecCCcccCCCCCEEEEEE--CCC-C--eEEEEecCCeEEEEeC----CC----CeeEEEecCCcceeE-EecCC
Q 043350 424 VRRVATRGAGAFVDDTKRTEAMVL--TAD-G--MIWSGCTNGLLVQWDG----NG----NRVSDILHHQCAVQC-FCTYG 489 (1133)
Q Consensus 424 V~~v~~~p~g~~~~h~~~V~sl~~--spd-g--~L~sgs~DG~I~vWd~----~g----~~l~~~~~h~~~V~~-fs~dg 489 (1133)
+ ......+..+++ ++. + ++++...+|.+..|.+ +| +.+++|......=-| +.+..
T Consensus 123 v-----------~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~ 191 (355)
T 3amr_A 123 I-----------ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEY 191 (355)
T ss_dssp E-----------ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTT
T ss_pred c-----------CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCC
Confidence 0 001123334444 553 4 6888889999999987 22 456777766555556 77888
Q ss_pred CEEEEEecCCeEEEEeCCC------Ccceeee-ccc-cCeEEeeec----cc-ceee-ecccCCeeecccc
Q 043350 490 SRMYVGYVSGYLQILDLDG------NLTASWI-AHS-SPVLKLAVG----VD-HIYS-LAAHGGIRGWTFT 546 (1133)
Q Consensus 490 ~~Lasgs~DG~I~vwd~~g------~~l~~~~-~H~-~~V~~l~fs----~~-~L~S-~s~Dg~I~lW~l~ 546 (1133)
.+|+++-.+..|..|+.+. +++..+. +|- ..+-.|++- ++ +|+. +-.+.+..+|+..
T Consensus 192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 9999999997777777551 2333331 232 367788773 23 5554 4467788888853
No 344
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=85.20 E-value=59 Score=37.27 Aligned_cols=145 Identities=12% Similarity=0.149 Sum_probs=83.1
Q ss_pred cCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEEeCCCCeEE-ecCCcEEEeeCCCC---C
Q 043350 111 FQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIACTDTQLWA-GQECGVRFWNLEDS---Y 186 (1133)
Q Consensus 111 ~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~s~dg~lla-s~Dg~VrvWdl~~~---~ 186 (1133)
-+|....||--. ..++.|+++++ ...++.|...+ .|.-=..-+...|+ -.+..|.-|++.+. .
T Consensus 73 MnP~~~iiALra-g~~lQiFnle~-------K~klks~~~~e-----~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~ 139 (494)
T 1bpo_A 73 MNPASKVIALKA-GKTLQIFNIEM-------KSKMKAHTMTD-----DVTFWKWISLNTVALVTDNAVYHWSMEGESQPV 139 (494)
T ss_dssp ECSSSSCEEEEE-TTEEEEEETTT-------TEEEEEEECSS-----CCCEEEEEETTEEEEECSSEEEEEESSSSCCCE
T ss_pred eCCCCcEEEEec-CCeEEEEchHH-------hhhhcceecCC-----CceEEEecCCCeEEEEcCCeeEEecccCCCCch
Confidence 477778887765 57899999983 33455555422 22111122334555 77889999999752 1
Q ss_pred CcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEe-------CCCeEEEEeCCCCCCCCCCCcccccccc
Q 043350 187 EPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGH-------KDGKIRSWKMDQTLDDANNPFKEGLSWQ 259 (1133)
Q Consensus 187 ~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs-------~Dg~V~vWd~~~~~~~~~~~~~~~~~l~ 259 (1133)
+.+..|. ......|..-..+++.++++..+ -.|.+.+|..+. +..+.+.
T Consensus 140 kvFdR~~---------------~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er---------~~sQ~ie 195 (494)
T 1bpo_A 140 KMFDRHS---------------SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR---------KVSQPIE 195 (494)
T ss_dssp EEEECCG---------------GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT---------CCEEEEC
T ss_pred hheecch---------------hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc---------cccchhe
Confidence 1111111 11134566666777888876433 246788999987 6666788
Q ss_pred cCCCCeEEEEEeeCCc---E-EEEeC---CCcEEEEeCCC
Q 043350 260 AHRGPVLAMIFSSQGD---L-WSGGE---GGVIKIWPWES 292 (1133)
Q Consensus 260 gH~~~V~sl~fsp~g~---L-~Sgs~---DgtI~iWdl~~ 292 (1133)
||.+.-..+.+..+.. | .-+.. .+.+.|-++..
T Consensus 196 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~ 235 (494)
T 1bpo_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT 235 (494)
T ss_dssp CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSC
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCC
Confidence 8865444443332211 3 33332 26777777753
No 345
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=83.32 E-value=2.1 Score=44.68 Aligned_cols=60 Identities=13% Similarity=0.137 Sum_probs=43.0
Q ss_pred EEecCeEEecccceEEEEEEECCccceEEEEEeecCCCcccCCCCCCccccCCCcCCCCceEEecCceEECCCCeEEEEE
Q 043350 958 IVSTESIILQNQDTCTLRITNKSAQEKAIFKIICDGQSTVKDDGDASDYRLRGSFGFPRWLEVTPAAGVIKPDSYIEVSV 1037 (1133)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~i~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~p~~~~~~p~~~~~~~~ 1037 (1133)
.++++.|. +...+..++|+|+|.. +....-+.. .| ..+.+++....|.|||+.+|++
T Consensus 125 ~~dfG~i~-g~~~~~~f~i~N~G~~-pL~I~~v~~--------------------sc-gct~~~~~~~~i~PGe~~~i~v 181 (220)
T 2qsv_A 125 YLDMGQLD-GETTKAAIEIRNVGAG-PLRLHSVTT--------------------RN-PALTAVPDRTEIKPGGSTLLRI 181 (220)
T ss_dssp EEEEEECT-TSCEEEEEEEEECSSS-CEEEEEEEE--------------------CS-TTEEEEESCSEECTTCEEEEEE
T ss_pred EEeeeccC-CCeEEEEEEEEECCCC-CEEEEEEEe--------------------CC-CCEeeecCCccCCCCCEEEEEE
Confidence 44444444 4556778999999998 555544310 13 4678888999999999999999
Q ss_pred EEe
Q 043350 1038 HHE 1040 (1133)
Q Consensus 1038 ~~~ 1040 (1133)
+..
T Consensus 182 ~~~ 184 (220)
T 2qsv_A 182 AVD 184 (220)
T ss_dssp EEC
T ss_pred EEe
Confidence 964
No 346
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=83.22 E-value=46 Score=37.11 Aligned_cols=72 Identities=10% Similarity=0.016 Sum_probs=38.0
Q ss_pred EEEEEeCCCCEEEEEe------------CCCeEEEEeCCCCCCCCCCCccccccccc-----CCCCeEEEEEee--CCc-
Q 043350 216 MCLMVDCGNRLVWTGH------------KDGKIRSWKMDQTLDDANNPFKEGLSWQA-----HRGPVLAMIFSS--QGD- 275 (1133)
Q Consensus 216 ~~la~spd~~~LaSgs------------~Dg~V~vWd~~~~~~~~~~~~~~~~~l~g-----H~~~V~sl~fsp--~g~- 275 (1133)
-.++..|+|..+++++ .+|.|.++|.+.... ..+.+ .+.+ ..-....|.+.+ +|.
T Consensus 53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~----~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~ 127 (355)
T 3sre_A 53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEP----AVSEL-EIIGNTLDISSFNPHGISTFIDDDNTV 127 (355)
T ss_dssp CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSC----CEEEC-EEECSSCCGGGCCEEEEEEEECTTCCE
T ss_pred ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCC----ceEEE-EccCCCCCcCceeeeeeEEEECCCCcE
Confidence 4566677665544441 689999999874111 01121 2222 233566777766 354
Q ss_pred -EEEEe-C--CCcEEEEeCCC
Q 043350 276 -LWSGG-E--GGVIKIWPWES 292 (1133)
Q Consensus 276 -L~Sgs-~--DgtI~iWdl~~ 292 (1133)
|+.+. . +.+|.+|+++.
T Consensus 128 ~L~Vvnh~~~~s~ielf~~d~ 148 (355)
T 3sre_A 128 YLLVVNHPGSSSTVEVFKFQE 148 (355)
T ss_dssp EEEEEECSTTCCEEEEEEEET
T ss_pred EEEEEECCCCCCeEEEEEEEC
Confidence 44442 2 45677776643
No 347
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=81.28 E-value=59 Score=34.36 Aligned_cols=70 Identities=7% Similarity=-0.002 Sum_probs=48.4
Q ss_pred CCeEEEEEeCCCCEEEE-EeCCCeEEEEeCCCCCCCCCCCccccccc--ccCCCCeEEEEEeeCCc-EEEEeCCCcEEEE
Q 043350 213 SPTMCLMVDCGNRLVWT-GHKDGKIRSWKMDQTLDDANNPFKEGLSW--QAHRGPVLAMIFSSQGD-LWSGGEGGVIKIW 288 (1133)
Q Consensus 213 s~V~~la~spd~~~LaS-gs~Dg~V~vWd~~~~~~~~~~~~~~~~~l--~gH~~~V~sl~fsp~g~-L~Sgs~DgtI~iW 288 (1133)
..+..++|+|+++.|++ ...++.|...|..+ +.+..+ .+ ....-.|++.++|. +++.-.++.+.++
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g---------~v~~~i~l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTNG---------DLIRTIPLDF-VKDLETIEYIGDNQFVISDERDYAIYVI 96 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETTC---------CEEEEEECSS-CSSEEEEEECSTTEEEEEETTTTEEEEE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCCC---------CEEEEEecCC-CCChHHeEEeCCCEEEEEECCCCcEEEE
Confidence 46899999997776654 66678888888774 323322 33 25677888888888 5555567788888
Q ss_pred eCCC
Q 043350 289 PWES 292 (1133)
Q Consensus 289 dl~~ 292 (1133)
++..
T Consensus 97 ~v~~ 100 (255)
T 3qqz_A 97 SLTP 100 (255)
T ss_dssp EECT
T ss_pred EcCC
Confidence 7754
No 348
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=80.70 E-value=34 Score=39.06 Aligned_cols=110 Identities=12% Similarity=-0.010 Sum_probs=62.6
Q ss_pred cCCCceeEeecCCCceeEEEecC----CcceeEEEeCCCCCccccccceEEEEeeCCCCccc-ccc-ccccceeeccCCc
Q 043350 350 AQPLSFSLWDARSKELLKVFNIE----GHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPH-GFL-QRSRNAIMGAADA 423 (1133)
Q Consensus 350 s~d~~I~lWD~~tg~~l~~~~~h----~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~-~~~-~~~~~~~~~~~~~ 423 (1133)
..++.||.-++..+...+.+... -..+..+..+|+|.+ +|..+..+... ... ......-.+....
T Consensus 38 a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~l---------LAl~g~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 38 IQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDL---------LCLFNDNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp EETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSE---------EEEECSSEEEEEECCTTCSCCCCHHHHHT
T ss_pred EECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCE---------EEEecCCeEEEEEecCccccCcccccccc
Confidence 34778887787755556666654 225778999999998 76665543222 111 1100000000012
Q ss_pred eEEEEEecCCcccCCCCCEEEEEECCCC----eEEEEecCCeEEEEeCC
Q 043350 424 VRRVATRGAGAFVDDTKRTEAMVLTADG----MIWSGCTNGLLVQWDGN 468 (1133)
Q Consensus 424 V~~v~~~p~g~~~~h~~~V~sl~~spdg----~L~sgs~DG~I~vWd~~ 468 (1133)
+..-.+.-+........+|..+.|+|-+ .|++-..|++|++||+.
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~ 157 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDIL 157 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETT
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcc
Confidence 2222222111111235678888888865 89999999999999994
No 349
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=80.16 E-value=67 Score=35.53 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=17.8
Q ss_pred cccCCCCC-EEEEecCCCeEEeccCC
Q 043350 109 KPFQPMVE-FIGSGGGTGIFKVPSRA 133 (1133)
Q Consensus 109 ~~~~p~g~-~lasgs~dg~irlW~~~ 133 (1133)
+.|.|+|+ ++++ ...|.|++++.+
T Consensus 23 i~~~pdG~~l~V~-e~~G~i~~~~~~ 47 (353)
T 2g8s_A 23 LAFLPDNHGMLIT-LRGGELRHWQAG 47 (353)
T ss_dssp EEECSTTCCEEEE-ETTTEEEEEETT
T ss_pred EEEcCCCCEEEEE-eCCceEEEEeCC
Confidence 77899999 5554 456888888754
No 350
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=78.26 E-value=26 Score=38.64 Aligned_cols=68 Identities=12% Similarity=0.043 Sum_probs=51.1
Q ss_pred CEEEEEECCCC-eEEEEecC-CeEEEEeCCCCeeEEEecCC------cceeE--EecCCCEEEEEecCCeEEEEeCCC
Q 043350 441 RTEAMVLTADG-MIWSGCTN-GLLVQWDGNGNRVSDILHHQ------CAVQC--FCTYGSRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 441 ~V~sl~~spdg-~L~sgs~D-G~I~vWd~~g~~l~~~~~h~------~~V~~--fs~dg~~Lasgs~DG~I~vwd~~g 508 (1133)
....++..++| ..++++.- +.|...+.+|+.+..+.... ...+. +.|+|..|++....|.+..+|+..
T Consensus 138 ~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 138 GVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 47889999999 66778888 88988888887555443211 11223 899999888887799999999873
No 351
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=78.00 E-value=1.3e+02 Score=36.28 Aligned_cols=97 Identities=12% Similarity=0.179 Sum_probs=56.3
Q ss_pred CCCEEEEEECCC-CeE-EEE-ecCCeEEEEeCCCCeeEEEec-CCcceeE--EecCCCEEEEEe-cCCeEEEEeCCCCcc
Q 043350 439 TKRTEAMVLTAD-GMI-WSG-CTNGLLVQWDGNGNRVSDILH-HQCAVQC--FCTYGSRMYVGY-VSGYLQILDLDGNLT 511 (1133)
Q Consensus 439 ~~~V~sl~~spd-g~L-~sg-s~DG~I~vWd~~g~~l~~~~~-h~~~V~~--fs~dg~~Lasgs-~DG~I~vwd~~g~~l 511 (1133)
-....+|++.|. |.| ++- +..+.|...+++|.....+.. .-...+. ++++++.|+.+. ..+.|..++++|...
T Consensus 434 l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~ 513 (619)
T 3s94_A 434 LEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGR 513 (619)
T ss_dssp CCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC
T ss_pred CCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCce
Confidence 345678888886 644 443 234778888888854444432 2233344 777777777665 457899999988654
Q ss_pred eeee-ccccCeEEeeecccceeeec
Q 043350 512 ASWI-AHSSPVLKLAVGVDHIYSLA 535 (1133)
Q Consensus 512 ~~~~-~H~~~V~~l~fs~~~L~S~s 535 (1133)
..+. ..-....+|++.+.+|+-..
T Consensus 514 ~~~~~~~l~~P~glav~~~~ly~tD 538 (619)
T 3s94_A 514 RVLVEDKIPHIFGFTLLGDYVYWTD 538 (619)
T ss_dssp EEEEECCCCSSCCEEEETTEEEEEC
T ss_pred EEEeccCCCCcEEEEEECCEEEEee
Confidence 4432 22222345555544544443
No 352
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=73.20 E-value=23 Score=39.63 Aligned_cols=71 Identities=7% Similarity=-0.098 Sum_probs=44.9
Q ss_pred CCCeEEEEEeCCCCEEEEEeC---C------------CeEEEEeCCCCCCCCCCCcccccccccCCCCeEEEEEeeCCc-
Q 043350 212 TSPTMCLMVDCGNRLVWTGHK---D------------GKIRSWKMDQTLDDANNPFKEGLSWQAHRGPVLAMIFSSQGD- 275 (1133)
Q Consensus 212 ~s~V~~la~spd~~~LaSgs~---D------------g~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~V~sl~fsp~g~- 275 (1133)
....+.+++.++|.+.++... | ..=+||.++. ..+..+...-..-+.|+|+|+++
T Consensus 164 ~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~---------~~~~~~~~~l~~pNGia~spDg~~ 234 (355)
T 3sre_A 164 LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP---------NDVRVVAEGFDFANGINISPDGKY 234 (355)
T ss_dssp CSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT---------TCCEEEEEEESSEEEEEECTTSSE
T ss_pred CCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC---------CeEEEeecCCcccCcceECCCCCE
Confidence 445789999999987776541 1 2334555443 11222222234568999999998
Q ss_pred E-EEEeCCCcEEEEeCC
Q 043350 276 L-WSGGEGGVIKIWPWE 291 (1133)
Q Consensus 276 L-~Sgs~DgtI~iWdl~ 291 (1133)
| ++-+..+.|..|+++
T Consensus 235 lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 235 VYIAELLAHKIHVYEKH 251 (355)
T ss_dssp EEEEEGGGTEEEEEEEC
T ss_pred EEEEeCCCCeEEEEEEC
Confidence 4 455567889888875
No 353
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=66.59 E-value=2.2e+02 Score=34.16 Aligned_cols=96 Identities=13% Similarity=0.124 Sum_probs=59.0
Q ss_pred CCCEEEEEECC-CC-eEEEEecCC--eEEEEeCCCCeeEEEec-CCcceeE--EecCCCEEEEEe-cCCeEEEEeCCCCc
Q 043350 439 TKRTEAMVLTA-DG-MIWSGCTNG--LLVQWDGNGNRVSDILH-HQCAVQC--FCTYGSRMYVGY-VSGYLQILDLDGNL 510 (1133)
Q Consensus 439 ~~~V~sl~~sp-dg-~L~sgs~DG--~I~vWd~~g~~l~~~~~-h~~~V~~--fs~dg~~Lasgs-~DG~I~vwd~~g~~ 510 (1133)
.....+|++.| .| ++++-.... .|...+++|.....+.. .-...+. +.++++.|+.+. ..+.|...+++|..
T Consensus 431 l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~ 510 (628)
T 4a0p_A 431 QDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN 510 (628)
T ss_dssp TCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc
Confidence 34577888888 66 555544333 67777788865544433 2223344 777777777665 46899999999865
Q ss_pred ceeee-ccccCeEEeeecccceeee
Q 043350 511 TASWI-AHSSPVLKLAVGVDHIYSL 534 (1133)
Q Consensus 511 l~~~~-~H~~~V~~l~fs~~~L~S~ 534 (1133)
...+. .......+|++.+..|+-+
T Consensus 511 r~~~~~~~~~~P~glav~~~~ly~t 535 (628)
T 4a0p_A 511 RIVLEDSNILQPVGLTVFENWLYWI 535 (628)
T ss_dssp CEEEECSSCSCEEEEEEETTEEEEE
T ss_pred eEEEEcCCCCCcEEEEEECCEEEEE
Confidence 55554 2334456777664444433
No 354
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=66.16 E-value=95 Score=41.03 Aligned_cols=145 Identities=11% Similarity=0.140 Sum_probs=82.5
Q ss_pred cCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEEeCCCCeEE-ecCCcEEEeeCCCC---C
Q 043350 111 FQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIACTDTQLWA-GQECGVRFWNLEDS---Y 186 (1133)
Q Consensus 111 ~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~s~dg~lla-s~Dg~VrvWdl~~~---~ 186 (1133)
-+|....||--. ..++.|+++++ ...+..|...+ .|.-=..-+...|+ -.+..|.-|++.+. .
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~-------k~klks~~~~e-----~VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~ 139 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEM-------KSKMKAHTMTD-----DVTFWKWISLNTVALVTDNAVYHWSMEGESQPV 139 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHH-------hhhhcccccCC-----CceEEEecCCCeeEEEcCCeEEEeccCCCCccH
Confidence 478788888765 57899999873 22455565533 33221233455666 77889999999752 1
Q ss_pred CcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEe-------CCCeEEEEeCCCCCCCCCCCcccccccc
Q 043350 187 EPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGH-------KDGKIRSWKMDQTLDDANNPFKEGLSWQ 259 (1133)
Q Consensus 187 ~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs-------~Dg~V~vWd~~~~~~~~~~~~~~~~~l~ 259 (1133)
+.+..|. .+ ....|..-..+++.++++..| -.|.+.++..+. +..+.+.
T Consensus 140 k~fdR~~-------------~L--~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er---------~~sQ~ie 195 (1630)
T 1xi4_A 140 KMFDRHS-------------SL--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR---------KVSQPIE 195 (1630)
T ss_pred HHHhcch-------------hc--ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc---------ccchhhh
Confidence 2221121 01 123566666677888776433 357888998886 5555677
Q ss_pred cCCCCeEEEEEeeC--Cc-EEEEe----CCCcEEEEeCCC
Q 043350 260 AHRGPVLAMIFSSQ--GD-LWSGG----EGGVIKIWPWES 292 (1133)
Q Consensus 260 gH~~~V~sl~fsp~--g~-L~Sgs----~DgtI~iWdl~~ 292 (1133)
||.+.-..+..... .. |++-. ..+.+.|-++..
T Consensus 196 gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~ 235 (1630)
T 1xi4_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT 235 (1630)
T ss_pred HhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCC
Confidence 77554433333221 11 32221 126777777743
No 355
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=66.03 E-value=49 Score=34.28 Aligned_cols=150 Identities=12% Similarity=-0.024 Sum_probs=75.3
Q ss_pred ccccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccc----eEEEEE-eCCCCeEEecCCcEEEeeC
Q 043350 108 HKPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGR----FLRNIA-CTDTQLWAGQECGVRFWNL 182 (1133)
Q Consensus 108 ~~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~----~V~~v~-s~dg~llas~Dg~VrvWdl 182 (1133)
...|+|+|.+.|. .+|. ||..... ... ...+.+-.. .+|. ...++. -++|.+.++.||.|.-|+-
T Consensus 45 ~laf~P~G~LYaV--~~G~--Ly~~~~~--t~~-~~~W~~s~t---~IG~~Gw~~F~a~~fD~~G~LYav~dG~iyr~~p 114 (236)
T 1tl2_A 45 FLFLSPGGELYGV--LNDK--IYKGTPP--THD-NDNWMGRAK---KIGNGGWNQFQFLFFDPNGYLYAVSKDKLYKASP 114 (236)
T ss_dssp EEEECTTSCEEEE--ETTE--EEEESCC--CST-TCCHHHHCE---EEECSCGGGCSEEEECTTSCEEEEETTEEEEESC
T ss_pred eEEECCCccEEEE--eCCe--EEEECCC--CCC-ccccccccc---EecccccccceEEEECCCCCEEEeCCCEEEEeCC
Confidence 4789999997777 5555 4433210 100 111111111 1100 124556 7899999988898887775
Q ss_pred CC-CCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccc--
Q 043350 183 ED-SYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQ-- 259 (1133)
Q Consensus 183 ~~-~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~-- 259 (1133)
.+ ....+-+. +..+-..-...+.+|.++|+|.+-+.. |+.+.-+......+ ..+-......
T Consensus 115 P~~~~~~Wl~~-----------a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~---~~wl~~~~~~g~ 178 (236)
T 1tl2_A 115 PQSDTDNWIAR-----------ATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQ---DNWLARATKIGQ 178 (236)
T ss_dssp CCSTTCCHHHH-----------SEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTT---CCHHHHCEEEES
T ss_pred CcCCCCceecc-----------ccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCC---cccccccceecc
Confidence 33 11111000 012222233568999999999887666 77754333322111 0010111111
Q ss_pred cCCCCeEEEEEeeCCcEEEEeCCCc
Q 043350 260 AHRGPVLAMIFSSQGDLWSGGEGGV 284 (1133)
Q Consensus 260 gH~~~V~sl~fsp~g~L~Sgs~Dgt 284 (1133)
..-..-+-+.|.++|.|..+. +|.
T Consensus 179 ~g~~~yr~l~f~~~G~l~~v~-~g~ 202 (236)
T 1tl2_A 179 GGWDTFKFLFFSSVGTLFGVQ-GGK 202 (236)
T ss_dssp SSGGGEEEEEECTTSCEEEEE-TTE
T ss_pred CCcceEEEEEECCCCcEEEEe-CCe
Confidence 222234456788888865555 663
No 356
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=65.09 E-value=1.7e+02 Score=32.18 Aligned_cols=105 Identities=10% Similarity=0.022 Sum_probs=55.8
Q ss_pred eEEEEE-eCCCCeEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCC---CCEEEEEeC
Q 043350 158 FLRNIA-CTDTQLWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCG---NRLVWTGHK 232 (1133)
Q Consensus 158 ~V~~v~-s~dg~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd---~~~LaSgs~ 232 (1133)
.-+.++ .++|.+++ ..++.|++++ .+........ + +..........|+++|+ +..|+.+..
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~------------~-v~~~g~~~p~gia~~pdf~~~g~lYv~~~ 97 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAEL------------S-VYHRGESGLLGLALHPRFPQEPYVYAYRT 97 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE-TTEEEEEEEC------------C-CCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecc------------e-EeecCCCCceeEEECCCCCCCCEEEEEEe
Confidence 345777 88999888 6678899888 3321110000 0 11112345689999998 555555443
Q ss_pred -C-----CeEEEEeCCCCCCCCCCCcccccc-cc---cCCCCeEEEEEeeCCc-EEEE
Q 043350 233 -D-----GKIRSWKMDQTLDDANNPFKEGLS-WQ---AHRGPVLAMIFSSQGD-LWSG 279 (1133)
Q Consensus 233 -D-----g~V~vWd~~~~~~~~~~~~~~~~~-l~---gH~~~V~sl~fsp~g~-L~Sg 279 (1133)
. ..|..|+.....- ...+.+.. +. +....-..|+|.|+|. .++.
T Consensus 98 ~~~~~~~~~v~r~~~~~~~~---~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 98 VAEGGLRNQVVRLRHLGERG---VLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp ECTTSSEEEEEEEEECSSCE---EEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred cCCCCCccEEEEEEeCCCCc---CceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 2 5677777653100 00011111 22 1111236899999999 4443
No 357
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=59.35 E-value=1.1e+02 Score=33.96 Aligned_cols=157 Identities=18% Similarity=0.142 Sum_probs=74.9
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eC----CCCeEE--e--cCCcEEE
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CT----DTQLWA--G--QECGVRF 179 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~----dg~lla--s--~Dg~Vrv 179 (1133)
+.|.|+|.++++--..|.|++++... +.. ..+..-+.....-......|+ +| ++.+++ + .+..|.-
T Consensus 37 ia~~pdG~llVter~~G~I~~v~~~~---g~~--~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 37 LAPLPGGDLLVSSRDEATITRVDAKT---GRK--TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTT---CCE--EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred EEEcCCCcEEEEEecCCEEEEEECCC---CcE--eeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 77899999888876688888886541 221 111111100001112567788 76 466666 2 3444554
Q ss_pred eeCCCCC---CcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCCCCEEEEEeC-------------CCeEEEEeCCC
Q 043350 180 WNLEDSY---EPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCGNRLVWTGHK-------------DGKIRSWKMDQ 243 (1133)
Q Consensus 180 Wdl~~~~---~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd~~~LaSgs~-------------Dg~V~vWd~~~ 243 (1133)
|.+.... ..+...+ .+..+ .+. ...|. ...|+|.|||.+.++-+. -|.|.-.+.++
T Consensus 112 ~~~~~~~~~~~~~~~~~-~i~~~----~p~-~~~H~--g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG 183 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPD-TVFRG----IPK-GVIHN--GGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG 183 (347)
T ss_dssp EEBCTTSCTTCCBCCCE-EEEEE----ECC-CSSCC--CCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred EEeCCCCcccccCCCcE-EEEEc----CCC-CCCcc--CccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence 5544310 0000000 00000 000 12343 457999999987777543 23333333332
Q ss_pred CCCCCCCCccccc-ccccCCCCeEEEEEeeCCcEEEEe
Q 043350 244 TLDDANNPFKEGL-SWQAHRGPVLAMIFSSQGDLWSGG 280 (1133)
Q Consensus 244 ~~~~~~~~~~~~~-~l~gH~~~V~sl~fsp~g~L~Sgs 280 (1133)
. ....+++.... --.+|+++ ..++|.|+|.|+++-
T Consensus 184 ~-ip~~nPf~~~~i~a~G~RNp-~Gla~dp~G~L~~~d 219 (347)
T 3das_A 184 E-PAPGNPFPGSPVYSYGHRNV-QGLAWDDKQRLFASE 219 (347)
T ss_dssp S-BCTTCSSTTCCEEEBCCSBC-CEEEECTTCCEEEEE
T ss_pred C-ccCCCCCCCCeEEeeCCCCc-ceEEECCCCCEEEEe
Confidence 1 11122222111 22366544 578898877766654
No 358
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=58.47 E-value=2.2e+02 Score=31.36 Aligned_cols=86 Identities=15% Similarity=0.223 Sum_probs=50.3
Q ss_pred EEEeeCCc-EEEEeCCCcEEEEeCCCC--ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCc
Q 043350 268 MIFSSQGD-LWSGGEGGVIKIWPWESI--EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHAR 344 (1133)
Q Consensus 268 l~fsp~g~-L~Sgs~DgtI~iWdl~~~--~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~ 344 (1133)
.-.+|..+ |+--. ..++.|+|+++. .+++.+. +... +|.+- +++...+++.
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~Vv---------fWkWi------------s~~~L~lVT~--- 125 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVT---------FWKWI------------SLNTVALVTD--- 125 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEE---------EEEEC------------SSSEEEEEES---
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccE---------EEEec------------CCCeEEEEcC---
Confidence 34567666 44333 688999999984 4444443 3333 66663 3444444443
Q ss_pred eEEEecCCCceeEeecC-CCceeEEEecCCc----ceeEEEeCCCCCc
Q 043350 345 ARVWCAQPLSFSLWDAR-SKELLKVFNIEGH----IENRVDTQSVQDQ 387 (1133)
Q Consensus 345 i~vwss~d~~I~lWD~~-tg~~l~~~~~h~~----~v~~l~~sp~g~~ 387 (1133)
..|.-|++. +..+.+.|..|.. .|..-..+++.++
T Consensus 126 --------taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW 165 (365)
T 2xzh_A 126 --------NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKW 165 (365)
T ss_dssp --------SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCE
T ss_pred --------CcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCE
Confidence 456667665 4567777766543 3556666777765
No 359
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=57.36 E-value=2.4e+02 Score=37.46 Aligned_cols=190 Identities=15% Similarity=0.224 Sum_probs=94.6
Q ss_pred EEeeCCcEEEEeCCCcEEEEeCCCC--ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCCceE
Q 043350 269 IFSSQGDLWSGGEGGVIKIWPWESI--EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHARAR 346 (1133)
Q Consensus 269 ~fsp~g~L~Sgs~DgtI~iWdl~~~--~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~~i~ 346 (1133)
-.+|..+++.-=...++.|+|+++. .+++.+.. ... +|.+- ++....+++
T Consensus 72 IMnP~~~iiALrag~~lQiFnl~~k~klks~~~~e-~Vv---------fWkWi------------s~~~l~lVT------ 123 (1630)
T 1xi4_A 72 IMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTD-DVT---------FWKWI------------SLNTVALVT------ 123 (1630)
T ss_pred ccCCCcceEEEecCCeEEEeehHHhhhhcccccCC-Cce---------EEEec------------CCCeeEEEc------
Confidence 3455555222223788999999873 45544433 233 56553 333333433
Q ss_pred EEecCCCceeEeecC-CCceeEEEecC----CcceeEEEeCCCCCccccccceEEEEeeCCCCccc------cccccccc
Q 043350 347 VWCAQPLSFSLWDAR-SKELLKVFNIE----GHIENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPH------GFLQRSRN 415 (1133)
Q Consensus 347 vwss~d~~I~lWD~~-tg~~l~~~~~h----~~~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~------~~~~~~~~ 415 (1133)
+..|.-|++. +..+.+.|..| +..|..-..+++.++ .+-+-.+..++.+. ....+..+
T Consensus 124 -----~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW------~~l~gi~~~~~~v~G~mQLyS~er~~sQ 192 (1630)
T 1xi4_A 124 -----DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKW------LLLTGISAQQNRVVGAMQLYSVDRKVSQ 192 (1630)
T ss_pred -----CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCe------EEEEeeccCCCcccceeeeeecccccch
Confidence 3456666665 34555555544 334556666777766 11011222344443 33445555
Q ss_pred eeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeCC----CC-----eeEEEec-----CCcc
Q 043350 416 AIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGN----GN-----RVSDILH-----HQCA 481 (1133)
Q Consensus 416 ~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~----g~-----~l~~~~~-----h~~~ 481 (1133)
.+.||......+... |. .+...+.+.+.. . ...+.+.+-++. |. ....+.. ..-+
T Consensus 193 ~iegha~~F~~~~~~--~~--~~~~~l~~f~~~--~-----~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfp 261 (1630)
T 1xi4_A 193 PIEGHAASFAQFKME--GN--AEESTLFCFAVR--G-----QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP 261 (1630)
T ss_pred hhhHhHhhhheeccC--CC--CCCceEEEEEEe--c-----CCCceEEEEecCCCccCCCCCccccccccCCcccccCcc
Confidence 667776654433332 11 111112222111 0 112567777662 11 1111111 1223
Q ss_pred eeE-EecCCCEEEEEecCCeEEEEeCCC
Q 043350 482 VQC-FCTYGSRMYVGYVSGYLQILDLDG 508 (1133)
Q Consensus 482 V~~-fs~dg~~Lasgs~DG~I~vwd~~g 508 (1133)
|.- +++.-..++.-+.-|.|.+||+++
T Consensus 262 v~~~vs~k~g~iy~itk~G~~~~~d~~t 289 (1630)
T 1xi4_A 262 VAMQISEKHDVVFLITKYGYIHLYDLET 289 (1630)
T ss_pred eEEEeccccCEEEEEecCceEEEEeccc
Confidence 333 677777888888999999999974
No 360
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=55.76 E-value=2.4e+02 Score=30.91 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=21.4
Q ss_pred CeEEEEEeeCCcEEEEeCCCcEEEEe
Q 043350 264 PVLAMIFSSQGDLWSGGEGGVIKIWP 289 (1133)
Q Consensus 264 ~V~sl~fsp~g~L~Sgs~DgtI~iWd 289 (1133)
.-+.|+|.|+|+|+.+..+|.|++++
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~ 57 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR 57 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE
Confidence 45799999999966667779999988
No 361
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=55.26 E-value=2.9e+02 Score=31.72 Aligned_cols=229 Identities=13% Similarity=0.186 Sum_probs=121.5
Q ss_pred EEEEeeCCc-EEEEeCCCcEEEEeCCCC--ceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEecCC
Q 043350 267 AMIFSSQGD-LWSGGEGGVIKIWPWESI--EKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHA 343 (1133)
Q Consensus 267 sl~fsp~g~-L~Sgs~DgtI~iWdl~~~--~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S~d~ 343 (1133)
+.-.+|..+ |+-=. ..++.|+|+++. .++..+.. ... +|.+- +++...+++
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~Vv---------fWkWi------------s~~~l~lVT--- 123 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVT---------FWKWI------------SLNTVALVT--- 123 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCC---------EEEEE------------ETTEEEEEC---
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-Cce---------EEEec------------CCCeEEEEc---
Confidence 345667666 44433 789999999884 44444433 333 56553 233333333
Q ss_pred ceEEEecCCCceeEeecC-CCceeEEEecCCc----ceeEEEeCCCCCccccccceEEEEeeCCCCccc------ccccc
Q 043350 344 RARVWCAQPLSFSLWDAR-SKELLKVFNIEGH----IENRVDTQSVQDQPVEDEMKVKFVSSNKKEKPH------GFLQR 412 (1133)
Q Consensus 344 ~i~vwss~d~~I~lWD~~-tg~~l~~~~~h~~----~v~~l~~sp~g~~~~e~e~~v~lasgs~Dg~i~------~~~~~ 412 (1133)
+..|.-|++. +..+.+.|..|.. .|.....+++.++ .+-+-....++.+. ....+
T Consensus 124 --------~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW------~~l~GI~~~~~~v~G~mQLYS~er~ 189 (494)
T 1bpo_A 124 --------DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKW------LLLTGISAQQNRVVGAMQLYSVDRK 189 (494)
T ss_dssp --------SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSE------EEEEEEEEETTEEEEEEEEEESTTC
T ss_pred --------CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCe------EEEEeecccCCcccceEEEeecccc
Confidence 3556667765 4467777766543 3556667777776 11011222344443 33445
Q ss_pred ccceeeccCCceEEEEEecCCcccCCCCCEEEEEECCCCeEEEEecCCeEEEEeCC----C-----CeeEEEec-----C
Q 043350 413 SRNAIMGAADAVRRVATRGAGAFVDDTKRTEAMVLTADGMIWSGCTNGLLVQWDGN----G-----NRVSDILH-----H 478 (1133)
Q Consensus 413 ~~~~~~~~~~~V~~v~~~p~g~~~~h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~----g-----~~l~~~~~-----h 478 (1133)
..+.+.||......+... +...+..-++|.... ...+.+.+-++. | +....+.. .
T Consensus 190 ~sQ~ieGhaa~F~~~~~~------g~~~~~~lf~fa~r~-----~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~ 258 (494)
T 1bpo_A 190 VSQPIEGHAASFAQFKME------GNAEESTLFCFAVRG-----QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQN 258 (494)
T ss_dssp CEEEECCSEEEEEEEECT------TCSSEEEEEEEEECS-----TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTT
T ss_pred ccchheeeeeeeEEEecC------CCCCCceEEEEEEec-----CCCcEEEEEEcCCCccCCCCccceeeeeeCCccccc
Confidence 556677776554433332 222111111111111 012677787762 2 11112211 2
Q ss_pred CcceeE-EecCCCEEEEEecCCeEEEEeCC-CCcceeeeccccCeEEeeec--ccceeeecccCCeeecccc
Q 043350 479 QCAVQC-FCTYGSRMYVGYVSGYLQILDLD-GNLTASWIAHSSPVLKLAVG--VDHIYSLAAHGGIRGWTFT 546 (1133)
Q Consensus 479 ~~~V~~-fs~dg~~Lasgs~DG~I~vwd~~-g~~l~~~~~H~~~V~~l~fs--~~~L~S~s~Dg~I~lW~l~ 546 (1133)
.-+|.- +++.-..++.-+.-|.|++||++ +.++..-+--.++|..-+.. ..-++.....|.|.-=.+.
T Consensus 259 DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~ 330 (494)
T 1bpo_A 259 DFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (494)
T ss_dssp CCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEEC
T ss_pred CceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEc
Confidence 234444 78888888999999999999998 45554444445555544433 4455566666666554443
No 362
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=54.96 E-value=2.5e+02 Score=30.86 Aligned_cols=108 Identities=10% Similarity=0.019 Sum_probs=55.8
Q ss_pred eEEEEE-eCCCCeEE-ecCCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCCCCeEEEEEeCC---CCEEEEEeC
Q 043350 158 FLRNIA-CTDTQLWA-GQECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANTSPTMCLMVDCG---NRLVWTGHK 232 (1133)
Q Consensus 158 ~V~~v~-s~dg~lla-s~Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~la~spd---~~~LaSgs~ 232 (1133)
.-+.++ .++|.+++ ..++.|++++..+. ..+... + +..........|+++|+ +..|+.+..
T Consensus 30 ~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~-~~~~~~------------~-v~~~g~~g~~gia~~pdf~~~g~lyv~~~ 95 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVTERPGRLVLISPSGK-KLVASF------------D-VANVGEAGLLGLALHPEFPKKSWVYLYAS 95 (354)
T ss_dssp CEEEEEEEETTEEEEEETTTEEEEECSSCE-EEEEEC------------C-CCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CCeEEEEcCCCeEEEEeCCCEEEEEeCCCc-eEeecc------------c-eeecCCCceeeEEeCCCCCcCCEEEEEEe
Confidence 356677 78898888 66688888874322 111000 0 11112235788999997 555555443
Q ss_pred ----C----CeEEEEeCCCCCCCCCCCcccccc-cc-cCCCCeEEEEEeeCCc-EEEEe
Q 043350 233 ----D----GKIRSWKMDQTLDDANNPFKEGLS-WQ-AHRGPVLAMIFSSQGD-LWSGG 280 (1133)
Q Consensus 233 ----D----g~V~vWd~~~~~~~~~~~~~~~~~-l~-gH~~~V~sl~fsp~g~-L~Sgs 280 (1133)
+ ..|..|+....... ....+.+.. +. +....-..|+|.|+|. .++.+
T Consensus 96 ~~~~~~~~~~~v~r~~~~~~~~~-~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 96 YFAEGGHIRNRVIRGRLDGSTFK-LKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EECGGGCEEEEEEEEEECSSSCC-EEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred ccCCCCCcceEEEEEEECCCCcC-cCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 3 56667776542100 000011111 21 1111246799999999 44433
No 363
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=54.19 E-value=4.7e+02 Score=33.91 Aligned_cols=108 Identities=11% Similarity=0.012 Sum_probs=68.5
Q ss_pred CCCCEEEEEECCCCeEEEEecCCeEEEEeCCC-CeeE-EEecCCcc-eeEEecCCCEEEEEecCCeEEEEe--CCCCcce
Q 043350 438 DTKRTEAMVLTADGMIWSGCTNGLLVQWDGNG-NRVS-DILHHQCA-VQCFCTYGSRMYVGYVSGYLQILD--LDGNLTA 512 (1133)
Q Consensus 438 h~~~V~sl~~spdg~L~sgs~DG~I~vWd~~g-~~l~-~~~~h~~~-V~~fs~dg~~Lasgs~DG~I~vwd--~~g~~l~ 512 (1133)
..+.+.+++-- +|+|++|- ..+|++|++.. +.+. .......- +..+...++++++|..-..|.++. ...+.+.
T Consensus 884 v~g~v~al~~~-~g~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~ 961 (1158)
T 3ei3_A 884 VKGAVYSMVEF-NGKLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE 961 (1158)
T ss_dssp ESSCEEEEEEE-TTEEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEE
T ss_pred cCCcCEEEeee-CCEEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEE
Confidence 35667777644 45555543 57899999943 3343 11111111 224666789999999777777654 4344444
Q ss_pred eeec--cccCeEEeeec-ccceeeecccCCeeeccccC
Q 043350 513 SWIA--HSSPVLKLAVG-VDHIYSLAAHGGIRGWTFTS 547 (1133)
Q Consensus 513 ~~~~--H~~~V~~l~fs-~~~L~S~s~Dg~I~lW~l~s 547 (1133)
.+.. +...++++.|- ...++.+..+|.|.+.....
T Consensus 962 ~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 962 EIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECT
T ss_pred EEEeecccccEEEEEEEccCcEEEEcCCCcEEEEecCC
Confidence 4443 44668888886 77888889999999887655
No 364
>4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ...
Probab=53.18 E-value=25 Score=31.02 Aligned_cols=70 Identities=20% Similarity=0.236 Sum_probs=41.2
Q ss_pred ceEEecCeEEecc-cceEEEEEEECCccceE----EEEEeecCCCcccCCCCCCccccCCCcCCCCceEEecCce---EE
Q 043350 956 ETIVSTESIILQN-QDTCTLRITNKSAQEKA----IFKIICDGQSTVKDDGDASDYRLRGSFGFPRWLEVTPAAG---VI 1027 (1133)
Q Consensus 956 ~~~~~~~~~~~~~-~~~~~~~i~n~~~~~~~----~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~p~~~---~~ 1027 (1133)
+..+..+.|.+.. .++..|+++|||.. |. +|.|..-.+... =| |.. -.=.+..-.+| ..
T Consensus 5 ei~~~~g~I~lN~gr~~~~l~V~NtGDR-PIQVGSHyHF~E~N~aL~-FD--------R~~---A~G~RLdIpAGTavRF 71 (101)
T 4ep8_B 5 EYHVKPGQIALNTGRATCRVVVENHGDR-PIQVGSHYHFAEVNPALK-FD--------RQQ---AAGYRLNIPAGTAVRF 71 (101)
T ss_dssp CEECCCSEEECSTTCCEEEEEEEECSSS-CEEEETTSCGGGSCTTEE-SC--------TTT---TTTEEECSSTTCEEEE
T ss_pred eEecCCCcEEEcCCCCEEEEEEEeCCCc-ceEEccccChhHcCccee-ec--------Hhh---ccCceecccCCCeEee
Confidence 3455567777765 35678999999986 44 556653211110 00 110 11235554444 67
Q ss_pred CCCCeEEEEEE
Q 043350 1028 KPDSYIEVSVH 1038 (1133)
Q Consensus 1028 ~p~~~~~~~~~ 1038 (1133)
+||++.+|+|-
T Consensus 72 EPG~~r~V~LV 82 (101)
T 4ep8_B 72 EPGQKREVELV 82 (101)
T ss_dssp CTTCEEEEEEE
T ss_pred CCCCeEEEEEE
Confidence 99999999987
No 365
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=52.79 E-value=83 Score=34.81 Aligned_cols=69 Identities=16% Similarity=0.073 Sum_probs=44.4
Q ss_pred CCEEEEEECCCCeEEEEecCCeEEEEeCCCC-eeEEEe---cCCcceeE--EecC---CCEEEEEec----C----CeEE
Q 043350 440 KRTEAMVLTADGMIWSGCTNGLLVQWDGNGN-RVSDIL---HHQCAVQC--FCTY---GSRMYVGYV----S----GYLQ 502 (1133)
Q Consensus 440 ~~V~sl~~spdg~L~sgs~DG~I~vWd~~g~-~l~~~~---~h~~~V~~--fs~d---g~~Lasgs~----D----G~I~ 502 (1133)
...+.+++.|+|.|+.+..+|.|++++.+|. .+..+. ........ ++|+ +.+|+++.. + ..|.
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~ 108 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVI 108 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEE
Confidence 3467888899997777777899999987665 222221 11223444 7887 556666554 3 6788
Q ss_pred EEeCCC
Q 043350 503 ILDLDG 508 (1133)
Q Consensus 503 vwd~~g 508 (1133)
.|+..+
T Consensus 109 r~~~~~ 114 (354)
T 3a9g_A 109 RGRLDG 114 (354)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 888764
No 366
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=44.13 E-value=29 Score=36.02 Aligned_cols=97 Identities=19% Similarity=0.148 Sum_probs=56.0
Q ss_pred CEEEEEECCCCeEEEEecCCeEEEEeC-CCC------eeEEEec---CCcceeEEecCCCEEEEEecCCeEEEEeCCCCc
Q 043350 441 RTEAMVLTADGMIWSGCTNGLLVQWDG-NGN------RVSDILH---HQCAVQCFCTYGSRMYVGYVSGYLQILDLDGNL 510 (1133)
Q Consensus 441 ~V~sl~~spdg~L~sgs~DG~I~vWd~-~g~------~l~~~~~---h~~~V~~fs~dg~~Lasgs~DG~I~vwd~~g~~ 510 (1133)
.+..++|+|+|.|+.. .+|.+.-.+. ++. .-..+-. +.-.-.-|.++|.+.++ .||.|+-++--.+-
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~ 118 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSD 118 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCST
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCC
Confidence 4558889998866666 7887766665 211 1111111 11111228888887666 67999888752221
Q ss_pred ceeeecc-----c---cCeEEeeec-ccceeeecccCCee
Q 043350 511 TASWIAH-----S---SPVLKLAVG-VDHIYSLAAHGGIR 541 (1133)
Q Consensus 511 l~~~~~H-----~---~~V~~l~fs-~~~L~S~s~Dg~I~ 541 (1133)
-..|.+- . ..+..|.|+ ...|..+. |+.+.
T Consensus 119 ~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~ly 157 (236)
T 1tl2_A 119 TDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFY 157 (236)
T ss_dssp TCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEE
T ss_pred CCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEE
Confidence 1122211 1 356788888 77777777 88743
No 367
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=43.75 E-value=3.1e+02 Score=28.72 Aligned_cols=60 Identities=12% Similarity=0.110 Sum_probs=35.3
Q ss_pred CC-eEEEEecC-----CeEEEEeCCCCeeEEEecCC---cceeEEecCCCEEEEEecCC-----eEEEEeCCCC
Q 043350 450 DG-MIWSGCTN-----GLLVQWDGNGNRVSDILHHQ---CAVQCFCTYGSRMYVGYVSG-----YLQILDLDGN 509 (1133)
Q Consensus 450 dg-~L~sgs~D-----G~I~vWd~~g~~l~~~~~h~---~~V~~fs~dg~~Lasgs~DG-----~I~vwd~~g~ 509 (1133)
++ .++.|+.+ ..+.+||.....-..+.... ..-.+...+++.++.|+.++ .|.+||.+.+
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 45 66666654 36888998665544443211 11122444777777777554 4888888754
No 368
>4ac7_B Urease subunit beta; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_B* 3ubp_B* 1ie7_B* 4ubp_B* 1ubp_B* 2ubp_B*
Probab=43.59 E-value=26 Score=32.22 Aligned_cols=73 Identities=18% Similarity=0.254 Sum_probs=43.1
Q ss_pred CCC-ceEEecCeEEeccc-ceEEEEEEECCccceE----EEEEeecCCCcccCCCCCCccccCCCcCCCCceEEecCce-
Q 043350 953 IIP-ETIVSTESIILQNQ-DTCTLRITNKSAQEKA----IFKIICDGQSTVKDDGDASDYRLRGSFGFPRWLEVTPAAG- 1025 (1133)
Q Consensus 953 ~~p-~~~~~~~~~~~~~~-~~~~~~i~n~~~~~~~----~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~p~~~- 1025 (1133)
.+| ++++..+.|.+... .+..|+++|||.. |. +|.|..-.+... ..|.. -.=.+..-.+|
T Consensus 7 miPGei~~~~g~I~lN~gr~~~~l~V~NtGDR-PIQVGSHyHF~E~N~aL~---------FDR~~---A~G~RLdIpAGT 73 (126)
T 4ac7_B 7 IVPGEYRVAEGEIEINAGREKTTIRVSNTGDR-PIQVGSHIHFVEVNKELL---------FDRAE---GIGRRLNIPSGT 73 (126)
T ss_dssp CCTTCEECCSSEEETTTTSCEEEEEEEECSSS-CEEEETTSCGGGSCTTEE---------SCGGG---GTTEEECSCTTC
T ss_pred CCCCeEEeCCCCEEeCCCCcEEEEEEEeCCCC-CEEEccccchhhcCchhh---------ccHhh---hcCccccccCCC
Confidence 456 45666778888654 5678999999986 44 455542211100 00100 01234444444
Q ss_pred --EECCCCeEEEEEE
Q 043350 1026 --VIKPDSYIEVSVH 1038 (1133)
Q Consensus 1026 --~~~p~~~~~~~~~ 1038 (1133)
..+||++.+|+|-
T Consensus 74 avRFEPG~~k~V~LV 88 (126)
T 4ac7_B 74 AARFEPGEEMEVELT 88 (126)
T ss_dssp EEEECTTCEEEEEEE
T ss_pred eEeeCCCCeEEEEEE
Confidence 6799999999987
No 369
>4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B*
Probab=43.59 E-value=26 Score=32.22 Aligned_cols=73 Identities=18% Similarity=0.254 Sum_probs=43.1
Q ss_pred CCC-ceEEecCeEEeccc-ceEEEEEEECCccceE----EEEEeecCCCcccCCCCCCccccCCCcCCCCceEEecCce-
Q 043350 953 IIP-ETIVSTESIILQNQ-DTCTLRITNKSAQEKA----IFKIICDGQSTVKDDGDASDYRLRGSFGFPRWLEVTPAAG- 1025 (1133)
Q Consensus 953 ~~p-~~~~~~~~~~~~~~-~~~~~~i~n~~~~~~~----~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~p~~~- 1025 (1133)
.+| ++++..+.|.+... .+..|+++|||.. |. +|.|..-.+... ..|.. -.=.+..-.+|
T Consensus 7 miPGei~~~~g~I~lN~gr~~~~l~V~NtGDR-PIQVGSHyHF~E~N~aL~---------FDR~~---A~G~RLdIpAGT 73 (126)
T 4ubp_B 7 IVPGEYRVAEGEIEINAGREKTTIRVSNTGDR-PIQVGSHIHFVEVNKELL---------FDRAE---GIGRRLNIPSGT 73 (126)
T ss_dssp CCTTCEECCSSEEETTTTSCEEEEEEEECSSS-CEEEETTSCGGGSCTTEE---------SCGGG---GTTEEECSCTTC
T ss_pred CCCCeEEeCCCCEEeCCCCcEEEEEEEeCCCC-CEEEccccchhhcCchhh---------ccHhh---hcCccccccCCC
Confidence 456 45666778888654 5678999999986 44 455542211100 00100 01234444444
Q ss_pred --EECCCCeEEEEEE
Q 043350 1026 --VIKPDSYIEVSVH 1038 (1133)
Q Consensus 1026 --~~~p~~~~~~~~~ 1038 (1133)
..+||++.+|+|-
T Consensus 74 avRFEPG~~k~V~LV 88 (126)
T 4ubp_B 74 AARFEPGEEMEVELT 88 (126)
T ss_dssp EEEECTTCEEEEEEE
T ss_pred eEeeCCCCeEEEEEE
Confidence 6799999999987
No 370
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=43.15 E-value=1.1e+02 Score=36.03 Aligned_cols=139 Identities=10% Similarity=0.063 Sum_probs=79.7
Q ss_pred ceeEeecCC----CceeEEEecCCcceeEEEeCCCCCccccccceEEEEeeC-CCCccccccccccce-----eeccCCc
Q 043350 354 SFSLWDARS----KELLKVFNIEGHIENRVDTQSVQDQPVEDEMKVKFVSSN-KKEKPHGFLQRSRNA-----IMGAADA 423 (1133)
Q Consensus 354 ~I~lWD~~t----g~~l~~~~~h~~~v~~l~~sp~g~~~~e~e~~v~lasgs-~Dg~i~~~~~~~~~~-----~~~~~~~ 423 (1133)
.+.+-|.+. +..+..+-.-......+.++|+|++ ++.++ .+.++-.++-..+.. +....+.
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGky---------i~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~ 369 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKY---------FIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDV 369 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCE---------EEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGG
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCE---------EEEcCCCCCeEEEEEeehhhhhhhccccCcccc
Confidence 477888776 4334333333444568899999998 55544 445543222111111 0001111
Q ss_pred eEEEEEecCCcccCCCCCEEEEEECCCC-eEEEEecCCeEEEEeCCC-----------CeeEEEecCCcceeE-------
Q 043350 424 VRRVATRGAGAFVDDTKRTEAMVLTADG-MIWSGCTNGLLVQWDGNG-----------NRVSDILHHQCAVQC------- 484 (1133)
Q Consensus 424 V~~v~~~p~g~~~~h~~~V~sl~~spdg-~L~sgs~DG~I~vWd~~g-----------~~l~~~~~h~~~V~~------- 484 (1133)
+. .. ..-...-...+|.++| ...|-..|..|..|++.. ..+..+..|-.+-.-
T Consensus 370 ~~---ae-----~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get 441 (638)
T 3sbq_A 370 IV---GE-----PELGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCET 441 (638)
T ss_dssp EE---EC-----CBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTS
T ss_pred eE---ee-----ccCCCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCcc
Confidence 10 11 0112335567788999 445556899999999732 356667666544332
Q ss_pred EecCCCEEEEEe---cCCe----------EEEEeCCCC
Q 043350 485 FCTYGSRMYVGY---VSGY----------LQILDLDGN 509 (1133)
Q Consensus 485 fs~dg~~Lasgs---~DG~----------I~vwd~~g~ 509 (1133)
..+||++|++.. .|+. -+++|++|.
T Consensus 442 ~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGd 479 (638)
T 3sbq_A 442 NEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGD 479 (638)
T ss_dssp TTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSS
T ss_pred CCCCccEEEEecccccccCcCCCCCCCCcceeEecCCC
Confidence 468999999987 4553 488899874
No 371
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=39.73 E-value=3.5e+02 Score=28.21 Aligned_cols=60 Identities=8% Similarity=0.074 Sum_probs=35.9
Q ss_pred CC-eEEEEecC-----CeEEEEeCCCCeeEEEec---CCcceeEEecCCCEEEEEecC-----CeEEEEeCCCC
Q 043350 450 DG-MIWSGCTN-----GLLVQWDGNGNRVSDILH---HQCAVQCFCTYGSRMYVGYVS-----GYLQILDLDGN 509 (1133)
Q Consensus 450 dg-~L~sgs~D-----G~I~vWd~~g~~l~~~~~---h~~~V~~fs~dg~~Lasgs~D-----G~I~vwd~~g~ 509 (1133)
++ .++.|+.+ ..+.+||........+.. ......+...+++.++.|+.+ ..|.+||.+.+
T Consensus 206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 45 66666654 468899986655444432 111122244577777777755 46788888753
No 372
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=38.50 E-value=3.7e+02 Score=28.13 Aligned_cols=60 Identities=12% Similarity=0.084 Sum_probs=34.9
Q ss_pred CC-eEEEEecC-----CeEEEEeCCCCeeEEEec---CCcceeEEecCCCEEEEEecC-----CeEEEEeCCCC
Q 043350 450 DG-MIWSGCTN-----GLLVQWDGNGNRVSDILH---HQCAVQCFCTYGSRMYVGYVS-----GYLQILDLDGN 509 (1133)
Q Consensus 450 dg-~L~sgs~D-----G~I~vWd~~g~~l~~~~~---h~~~V~~fs~dg~~Lasgs~D-----G~I~vwd~~g~ 509 (1133)
++ .++.|+.+ ..+.+||.....-..+.. ......+..-+++.++.|+.+ ..|.+||.+.+
T Consensus 200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 200 KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 45 55566543 357888886654444422 112222344477777888744 46888998754
No 373
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=33.42 E-value=4.3e+02 Score=27.47 Aligned_cols=79 Identities=11% Similarity=-0.055 Sum_probs=40.7
Q ss_pred CeEEEEeCCCCeeEEEec---CCcceeEEecCCCEEEEEecC-----CeEEEEeCCCCcceeeeccc---cCeEEeeecc
Q 043350 460 GLLVQWDGNGNRVSDILH---HQCAVQCFCTYGSRMYVGYVS-----GYLQILDLDGNLTASWIAHS---SPVLKLAVGV 528 (1133)
Q Consensus 460 G~I~vWd~~g~~l~~~~~---h~~~V~~fs~dg~~Lasgs~D-----G~I~vwd~~g~~l~~~~~H~---~~V~~l~fs~ 528 (1133)
..+.+||.....-..+.. ......+...+++.++.|+.+ ..+.+||.+.+.-..+.... ..-..+.+.+
T Consensus 173 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 252 (302)
T 2xn4_A 173 STVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNG 252 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETT
T ss_pred cEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECC
Confidence 347888886654444322 111122244577777788764 36889998754322221111 1112233346
Q ss_pred cceeeecccC
Q 043350 529 DHIYSLAAHG 538 (1133)
Q Consensus 529 ~~L~S~s~Dg 538 (1133)
..++.++.++
T Consensus 253 ~i~v~GG~~~ 262 (302)
T 2xn4_A 253 LLYVVGGDDG 262 (302)
T ss_dssp EEEEECCBCS
T ss_pred EEEEECCcCC
Confidence 6666666554
No 374
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=33.37 E-value=50 Score=36.50 Aligned_cols=97 Identities=12% Similarity=0.113 Sum_probs=57.4
Q ss_pred CeEEEEecCCeEEEEeC-CCCeeEEEecC-CcceeEE----ec-CCCEEEEE-ecCCeEEEEeCCCCcceeeec------
Q 043350 451 GMIWSGCTNGLLVQWDG-NGNRVSDILHH-QCAVQCF----CT-YGSRMYVG-YVSGYLQILDLDGNLTASWIA------ 516 (1133)
Q Consensus 451 g~L~sgs~DG~I~vWd~-~g~~l~~~~~h-~~~V~~f----s~-dg~~Lasg-s~DG~I~vwd~~g~~l~~~~~------ 516 (1133)
+.++.++.||.|.-.|. +|+.+.++... ..++... .+ ++..++.. +.||.|+.++..... ..|.-
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~-~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL-QKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE-EEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCc-EEeeeccccce
Confidence 47899999999999998 88988888764 1222221 11 23333343 689999999976421 11211
Q ss_pred cccCeEE---eee-------cccceeeecccCCeeeccccCC
Q 043350 517 HSSPVLK---LAV-------GVDHIYSLAAHGGIRGWTFTSP 548 (1133)
Q Consensus 517 H~~~V~~---l~f-------s~~~L~S~s~Dg~I~lW~l~s~ 548 (1133)
...++.. ..+ .+..+++++.+|.+..-|+.+.
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG 131 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNG 131 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTC
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCC
Confidence 1222221 001 3566777777777776665554
No 375
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=31.32 E-value=2e+02 Score=26.52 Aligned_cols=91 Identities=16% Similarity=0.135 Sum_probs=49.1
Q ss_pred ccceEEEEEEECCccceEEEEEeecCCCc---cc-CCCCCCccccCCCcCCCCceEEecCceEECCCCeEEEEEEEeecc
Q 043350 968 NQDTCTLRITNKSAQEKAIFKIICDGQST---VK-DDGDASDYRLRGSFGFPRWLEVTPAAGVIKPDSYIEVSVHHEEFH 1043 (1133)
Q Consensus 968 ~~~~~~~~i~n~~~~~~~~f~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~wl~~~p~~~~~~p~~~~~~~~~~~~~~ 1043 (1133)
..-...|+|+|.+.. ++.++|- .|+.. .. .+|... .+--.+-.|.. -...-+|+|||+.....+..+
T Consensus 18 ~~v~~~ltv~N~s~~-~v~l~f~-Sgq~~Df~v~d~~G~~V-wrwS~~~~FtQ----a~~~~tl~pGE~~~f~~~w~~-- 88 (120)
T 3isy_A 18 EQIKFNMSLKNQSER-AIEFQFS-TGQKFELVVYDSEHKER-YRYSKEKMFTQ----AFQNLTLESGETYDFSDVWKE-- 88 (120)
T ss_dssp SCEEEEEEEEECSSS-CEEEEES-SSCCEEEEEECTTCCEE-EETTTTCCCCC----CCEEEEECTTCEEEEEEEESS--
T ss_pred CeEEEEEEEEcCCCC-cEEEEeC-CCCEEEEEEECCCCCEE-EEccccchhhh----hhceEEECCCCEEEEEEEeCC--
Confidence 344567999999987 7888884 23321 11 122110 00000001111 122448999999999998762
Q ss_pred chhhhhcCCCCCCcccccCCceeEEEEEEEccccCC
Q 043350 1044 TLEEFVDGIPQNWWCEDTRDKEVMLSLVVQGCCSND 1079 (1133)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 1079 (1133)
.+--| .=.++..|+-++++.....
T Consensus 89 ---~~~pG---------~Ytl~a~l~~~~~~~~~~~ 112 (120)
T 3isy_A 89 ---VPEPG---------TYEVKVTFKGRAENLKQVQ 112 (120)
T ss_dssp ---CCCSE---------EEEEEEEECCEETTCCCCE
T ss_pred ---CCCCc---------cEEEEEEEEeeeccceeee
Confidence 22334 4456677777777755443
No 376
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=27.78 E-value=2.8e+02 Score=33.71 Aligned_cols=138 Identities=7% Similarity=0.140 Sum_probs=0.0
Q ss_pred eEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----CCCCCcccccccccCCCC--------eEEEEEeeCCcEEEEeC
Q 043350 215 TMCLMVDCGNRLVWTGHKDGKIRSWKMDQTLD-----DANNPFKEGLSWQAHRGP--------VLAMIFSSQGDLWSGGE 281 (1133)
Q Consensus 215 V~~la~spd~~~LaSgs~Dg~V~vWd~~~~~~-----~~~~~~~~~~~l~gH~~~--------V~sl~fsp~g~L~Sgs~ 281 (1133)
|.|+.+. ..+|++-+.|.++|+|++.++.+ ....+......+.+...+ -..+.|+|.+
T Consensus 224 Is~~~~~--~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~~~~lv~y~P~~------- 294 (729)
T 3f7f_A 224 ISCKLFH--ERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLYNNTLVTLLPLE------- 294 (729)
T ss_dssp EEEEEET--TTEEEEEETTCEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEESSSEEEEEETTT-------
T ss_pred EEEeccC--CcEEEEEEcCCeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhheeeEEEEEecCC-------
Q ss_pred CCcEEEEeCCC-CceeeEeCCCCceEEEEeecceEEEccCceeeeccccCCCCCeEEEEe-----cCCceEEEecCCCce
Q 043350 282 GGVIKIWPWES-IEKSLSLKPEEKHMAALLVERSFIDLRAQVTVNGACSISSTEIKCMLS-----DHARARVWCAQPLSF 355 (1133)
Q Consensus 282 DgtI~iWdl~~-~~~~l~~~~~~~~l~s~~~d~s~~d~~~~~~v~~~~~~~~~~~~~l~S-----~d~~i~vwss~d~~I 355 (1133)
.|..++|.+.. ....+.+.|... +-+...+...|.+. |..+... .++...+|.
T Consensus 295 ~G~Fk~~~l~~~~~~~l~~~p~~~-ip~~~s~s~iW~L~--------------DF~lt~~~~l~~~~~~l~Lwv------ 353 (729)
T 3f7f_A 295 NGLFQMGTLLVDSSGILTYTFQNN-IPTNLSASAIWSIV--------------DLVLTRPLELNVEASYLNLIV------ 353 (729)
T ss_dssp TCEEEEEEEEC-----CEEECCCE-EECCCCTTTCCEEE--------------EEEEESCCCCSCSCCSEEEEE------
T ss_pred CCeEEEEEEEEcCCCceEeeecCc-cCCCCCCCCceEEE--------------eeEecccccccCCCCceEEEE------
Q ss_pred eEeecCCCceeEEEecCCcceeEEEeCC
Q 043350 356 SLWDARSKELLKVFNIEGHIENRVDTQS 383 (1133)
Q Consensus 356 ~lWD~~tg~~l~~~~~h~~~v~~l~~sp 383 (1133)
+|.-.+...++.+....+.+....|.+
T Consensus 354 -LWkSn~~s~lq~L~f~~~~~~~~~W~~ 380 (729)
T 3f7f_A 354 -LWKSGTASKLQILNVNDESFKNYEWIE 380 (729)
T ss_dssp -EEEETTEEEEEEEEECSSSTTSEEEEE
T ss_pred -EEecCCccEEEEEEecCCccccCceee
No 377
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=27.71 E-value=5.3e+02 Score=26.69 Aligned_cols=89 Identities=8% Similarity=0.032 Sum_probs=46.7
Q ss_pred CC-eEEEEecC-----CeEEEEeCCCCeeEEEec---CCcceeEEecCCCEEEEEecC-----CeEEEEeCCCCcceeee
Q 043350 450 DG-MIWSGCTN-----GLLVQWDGNGNRVSDILH---HQCAVQCFCTYGSRMYVGYVS-----GYLQILDLDGNLTASWI 515 (1133)
Q Consensus 450 dg-~L~sgs~D-----G~I~vWd~~g~~l~~~~~---h~~~V~~fs~dg~~Lasgs~D-----G~I~vwd~~g~~l~~~~ 515 (1133)
++ .++.|+.+ ..+.+||........+.. ....-.+...+++.++.|+.+ ..|.+||++.+....+.
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 238 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT 238 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECC
Confidence 45 55666554 458888986654444432 111112244567777777754 46899998754322221
Q ss_pred c---cccCeEEeeecccceeeecccC
Q 043350 516 A---HSSPVLKLAVGVDHIYSLAAHG 538 (1133)
Q Consensus 516 ~---H~~~V~~l~fs~~~L~S~s~Dg 538 (1133)
. ....-..+.+.++.++.++.++
T Consensus 239 ~~p~~r~~~~~~~~~~~i~v~GG~~~ 264 (301)
T 2vpj_A 239 SMTTPRCYVGATVLRGRLYAIAGYDG 264 (301)
T ss_dssp CCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred CCCCcccceeEEEECCEEEEEcCcCC
Confidence 1 1111123333466666666553
No 378
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase, F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces cerevisiae}
Probab=27.25 E-value=11 Score=43.60 Aligned_cols=18 Identities=56% Similarity=1.006 Sum_probs=15.6
Q ss_pred CCCCccEEEEEccCCccc
Q 043350 779 DLAEADMVIFFGDFNYRL 796 (1133)
Q Consensus 779 ~~~~~d~~f~~GDlNyRi 796 (1133)
.|.+++.|||=||||||=
T Consensus 373 ~L~~S~LVIFKGDLNYRK 390 (471)
T 3pt1_A 373 DLQKSNLVIFKGDLNYRK 390 (471)
T ss_dssp HHTTCSEEEEEHHHHHHH
T ss_pred HHhhCcEEEEecchhhhh
Confidence 367789999999999994
No 379
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=26.06 E-value=7.6e+02 Score=27.95 Aligned_cols=161 Identities=11% Similarity=0.083 Sum_probs=0.0
Q ss_pred cccCCCCCEEEEecCCCeEEeccCCCCCCCCCCeeeeccCCCccccccceEEEEE-eC----CCCeEE--ec--------
Q 043350 109 KPFQPMVEFIGSGGGTGIFKVPSRAAVHPGRPPCLELRPHPLKETQAGRFLRNIA-CT----DTQLWA--GQ-------- 173 (1133)
Q Consensus 109 ~~~~p~g~~lasgs~dg~irlW~~~~~~~g~~~~~~l~~H~~~~~~~g~~V~~v~-s~----dg~lla--s~-------- 173 (1133)
+.|.|+|+++++-...+.|++++... +......--............+..|+ .| ++.+.+ +.
T Consensus 32 ~a~~pdG~l~V~e~~gg~I~~~~~~~---g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~ 108 (454)
T 1cru_A 32 LLWGPDNQIWLTERATGKILRVNPES---GSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDK 108 (454)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTT---CCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--C
T ss_pred EEEcCCCcEEEEEcCCCEEEEEECCC---CcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCcc
Q ss_pred ----CCcEEEeeCCCCCCcCcCCCccccCCCCCCCceeeccCC---CCeEEEEEeCCCCEEEEEeCC-------------
Q 043350 174 ----ECGVRFWNLEDSYEPGAGIGGRVRRGDEDAAPFYESANT---SPTMCLMVDCGNRLVWTGHKD------------- 233 (1133)
Q Consensus 174 ----Dg~VrvWdl~~~~~~~~gh~~~v~~g~~~~~~~~~~~h~---s~V~~la~spd~~~LaSgs~D------------- 233 (1133)
...|.-|++......+...+ ........ +....|+|.|||.+.++-+..
T Consensus 109 ~~~~~~~v~r~~~~~~~~~~~~~~-----------~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~ 177 (454)
T 1cru_A 109 ELPNQTIIRRYTYNKSTDTLEKPV-----------DLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQ 177 (454)
T ss_dssp CSCEEEEEEEEEEETTTTEEEEEE-----------EEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCC
T ss_pred ccccccEEEEEEECCCCCCcCCcE-----------EEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCccccccccc
Q ss_pred -------------------CeEEEEeCCCCCCCCCCCcc-----------cccccccCCCCeEEEEEeeCCc--EEEEeC
Q 043350 234 -------------------GKIRSWKMDQTLDDANNPFK-----------EGLSWQAHRGPVLAMIFSSQGD--LWSGGE 281 (1133)
Q Consensus 234 -------------------g~V~vWd~~~~~~~~~~~~~-----------~~~~l~gH~~~V~sl~fsp~g~--L~Sgs~ 281 (1133)
|.|.-.+.++ . ....+..-......|+|.|+|. +.-.+.
T Consensus 178 ~~~~p~~~~~~aq~~~~~~G~IlRi~~dG---------~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~L~~~d~g~ 248 (454)
T 1cru_A 178 AQHTPTQQELNGKDYHTYMGKVLRLNLDG---------SIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSEQGP 248 (454)
T ss_dssp TTCCCCHHHHHTTCCTTCSSEEEEECTTS---------CCCTTCCEETTEECSEEEBCCSEEEEEEECTTSCEEEEEECS
T ss_pred cccccccccccccCCCCCCeeEEEEeCCC---------CCCCCCCCCCCCcceEEEECCCCcceEEECCCCCEEEEecCC
Q ss_pred CCcEEEEeCCC
Q 043350 282 GGVIKIWPWES 292 (1133)
Q Consensus 282 DgtI~iWdl~~ 292 (1133)
++--.|.-+..
T Consensus 249 ~~~dein~i~~ 259 (454)
T 1cru_A 249 NSDDEINLIVK 259 (454)
T ss_dssp SSCEEEEECCT
T ss_pred CCCeEEEEecC
No 380
>1yk0_E Atrial natriuretic factor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, hormone-growth factor receptor complex; HET: NAG; 2.40A {Homo sapiens} PDB: 1t34_H*
Probab=24.13 E-value=28 Score=22.63 Aligned_cols=15 Identities=33% Similarity=0.720 Sum_probs=12.7
Q ss_pred eecCCCccccccCCC
Q 043350 1089 HCFSAKTVRIDSKSN 1103 (1133)
Q Consensus 1089 ~~~~~~~~~~~~~~~ 1103 (1133)
+|||..++||-.-+|
T Consensus 1 gCFG~riDRIgs~Sg 15 (26)
T 1yk0_E 1 SCFGGRMDRIGAQSG 15 (26)
T ss_dssp CTTCSCCCCCSSSCC
T ss_pred CCcCccccccccccC
Confidence 599999999987665
No 381
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=23.85 E-value=8.8e+02 Score=27.94 Aligned_cols=111 Identities=10% Similarity=0.089 Sum_probs=61.1
Q ss_pred CCEEEEEECCCC-eEEEE-ecCCeEEEEeCCC--Cee---EEEecC---C-------------cc--eeEEe-------c
Q 043350 440 KRTEAMVLTADG-MIWSG-CTNGLLVQWDGNG--NRV---SDILHH---Q-------------CA--VQCFC-------T 487 (1133)
Q Consensus 440 ~~V~sl~~spdg-~L~sg-s~DG~I~vWd~~g--~~l---~~~~~h---~-------------~~--V~~fs-------~ 487 (1133)
..-..++++|+| .|+.+ .....|+.++.++ ..+ ..+.+. . .+ ..+.. .
T Consensus 310 ~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~ 389 (496)
T 3kya_A 310 SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEE 389 (496)
T ss_dssp SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSC
T ss_pred CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccC
Confidence 345689999999 55544 5677888877644 222 223221 0 01 12233 3
Q ss_pred CCCEEEEEecCCeEEEEeCCCCcceeeecc------------------------ccCeEEeeecc--cceeee-cccCCe
Q 043350 488 YGSRMYVGYVSGYLQILDLDGNLTASWIAH------------------------SSPVLKLAVGV--DHIYSL-AAHGGI 540 (1133)
Q Consensus 488 dg~~Lasgs~DG~I~vwd~~g~~l~~~~~H------------------------~~~V~~l~fs~--~~L~S~-s~Dg~I 540 (1133)
+|.+.++=..+..|+.++.+|. +.++.+. -..-..|+++. ..|+-+ .....|
T Consensus 390 ~g~lyVaD~~N~rIr~i~~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rI 468 (496)
T 3kya_A 390 EYDFYFVDRLNFCVRKVTPEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTI 468 (496)
T ss_dssp CEEEEEEEGGGTEEEEECTTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEE
T ss_pred CCeEEEEECCCCEEEEEeCCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEE
Confidence 4555555567889999997773 3333322 01245677762 344444 445668
Q ss_pred eeccccCCCCc
Q 043350 541 RGWTFTSPSPL 551 (1133)
Q Consensus 541 ~lW~l~s~~~l 551 (1133)
|.+++......
T Consensus 469 rki~~~~~~~~ 479 (496)
T 3kya_A 469 RTISMEQEENV 479 (496)
T ss_dssp EEEEECCCC--
T ss_pred EEEECCCCccc
Confidence 87777654443
No 382
>2yka_B ORF57 protein, 52 kDa immediate-early phosphoprotein; RNA binding protein-transcription complex, RNA binding prote; NMR {Saimiriine herpesvirus 2}
Probab=29.62 E-value=17 Score=23.00 Aligned_cols=7 Identities=43% Similarity=1.350 Sum_probs=6.3
Q ss_pred cccccee
Q 043350 867 PAWCDRI 873 (1133)
Q Consensus 867 PswcDRI 873 (1133)
|+|.|||
T Consensus 9 ~nWs~RV 15 (26)
T 2yka_B 9 TSWADRV 15 (26)
Confidence 8999997
No 383
>1jdp_H CNP, C-type natriuretic peptide; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens}
Probab=23.83 E-value=23 Score=22.95 Aligned_cols=16 Identities=44% Similarity=0.630 Sum_probs=13.3
Q ss_pred eeecCCCccccccCCC
Q 043350 1088 RHCFSAKTVRIDSKSN 1103 (1133)
Q Consensus 1088 ~~~~~~~~~~~~~~~~ 1103 (1133)
.+|||..++||-.-+|
T Consensus 4 ~gCFG~riDRIgs~Sg 19 (26)
T 1jdp_H 4 KGCFGLKLDRIGSMSG 19 (26)
T ss_pred ccccCceecccccccC
Confidence 4799999999987665
No 384
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=23.11 E-value=5.2e+02 Score=28.36 Aligned_cols=58 Identities=12% Similarity=0.123 Sum_probs=36.1
Q ss_pred ceEEecCceEECCCCeEEEEEEEeecc-chhhh----hcCCCCCCcccccCCceeEEEEEEEccccCCCeeeEEEeee
Q 043350 1017 WLEVTPAAGVIKPDSYIEVSVHHEEFH-TLEEF----VDGIPQNWWCEDTRDKEVMLSLVVQGCCSNDTRKHQIRVRH 1089 (1133)
Q Consensus 1017 wl~~~p~~~~~~p~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 1089 (1133)
=|+|+|.. -|.|||+.+|++++.|-. -.+.| +|- +...--.|. ..+ .+|+.+.+.|.+
T Consensus 313 gL~vsd~~-pI~PGETr~~~v~a~da~WeveRL~~l~~D~---------dSrfgGLLf--F~d---~~G~r~~~~I~~ 375 (382)
T 1yew_A 313 GLSVSDNS-PLAPGETRTVDVTASDAAWEVYRLSDIIYDP---------DSRFAGLLF--FFD---ATGNRQVVQIDA 375 (382)
T ss_dssp CEEESCCS-CBCTTCEEEEEEEEECHHHHHTCGGGGGGSS---------CCEEEEEEE--EEE---TTSCEEEEEEEE
T ss_pred CceeCCCC-CcCCCceeEEEEEeehHHHHHHHhhhhhcCc---------ccceeEEEE--EEc---CCCCEEEEeccC
Confidence 47888765 799999999999976644 33333 433 222233333 333 348888888765
No 385
>1yk1_E Natriuretic peptides B; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, hormone-growth factor receptor complex; HET: NAG; 2.90A {Homo sapiens}
Probab=23.11 E-value=30 Score=22.51 Aligned_cols=15 Identities=47% Similarity=0.682 Sum_probs=12.8
Q ss_pred eecCCCccccccCCC
Q 043350 1089 HCFSAKTVRIDSKSN 1103 (1133)
Q Consensus 1089 ~~~~~~~~~~~~~~~ 1103 (1133)
+|||..+++|-.-+|
T Consensus 1 gCFG~riDRIgs~Sg 15 (26)
T 1yk1_E 1 GCFGRKMDRISSSSG 15 (26)
T ss_dssp CTTCSCCSSCSSSCC
T ss_pred CCcCccccccccccc
Confidence 599999999987765
No 386
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=21.41 E-value=56 Score=34.58 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=24.4
Q ss_pred cceeEEEEEEEcCeEEEEEecccccChHHHHHHHHHHHHHHH
Q 043350 696 NKGGVGLRIRVYDRTICFVNCHLAAHLEAVNRRNADYDHIYR 737 (1133)
Q Consensus 696 nKG~v~~r~~~~~~~~~fvn~Hlaa~~~~~~~Rn~d~~~i~~ 737 (1133)
..|+++++ +.+ +.|++.||.+.... +|++-...|..
T Consensus 121 ~R~~l~i~--i~g--~~f~s~Hl~~~~~~--ea~~~v~~I~~ 156 (261)
T 1sr4_B 121 SRPAVGIR--IGT--DVFFTVHALATGGS--DAVSLIRNIFT 156 (261)
T ss_dssp CCCEEEEE--ETT--EEEEEEECCTTTTT--THHHHHHHHHH
T ss_pred CcceEEEE--ECC--eEEEEeCCCCCCCc--hHHHHHHHHHH
Confidence 67888885 666 99999999998521 23344444544
No 387
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=20.66 E-value=7.2e+02 Score=25.72 Aligned_cols=79 Identities=13% Similarity=-0.055 Sum_probs=41.2
Q ss_pred CeEEEEeCCCCeeEEEecCCc---ceeEEecCCCEEEEEecC-----CeEEEEeCCCCcceee---eccccCeEEeeecc
Q 043350 460 GLLVQWDGNGNRVSDILHHQC---AVQCFCTYGSRMYVGYVS-----GYLQILDLDGNLTASW---IAHSSPVLKLAVGV 528 (1133)
Q Consensus 460 G~I~vWd~~g~~l~~~~~h~~---~V~~fs~dg~~Lasgs~D-----G~I~vwd~~g~~l~~~---~~H~~~V~~l~fs~ 528 (1133)
..+.+||........+..... .-.+...+++.++.|+.+ ..+.+||...+.-..+ .........+.+.+
T Consensus 169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 248 (306)
T 3ii7_A 169 NSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGS 248 (306)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETT
T ss_pred ceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEECC
Confidence 448888986655444432111 112234467777777754 4688999875422221 11112223334446
Q ss_pred cceeeecccC
Q 043350 529 DHIYSLAAHG 538 (1133)
Q Consensus 529 ~~L~S~s~Dg 538 (1133)
..++.++.++
T Consensus 249 ~i~v~GG~~~ 258 (306)
T 3ii7_A 249 IVYVLAGFQG 258 (306)
T ss_dssp EEEEEECBCS
T ss_pred EEEEEeCcCC
Confidence 6666776553
No 388
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=20.45 E-value=8.2e+02 Score=26.30 Aligned_cols=163 Identities=9% Similarity=0.041 Sum_probs=80.5
Q ss_pred CCCCEEEEecCCCeEEeccCCCCCC-CCCCeeeeccCCCccccccceEEEEE--eCCCCeEE-ecCCcEEEeeCCCCCC-
Q 043350 113 PMVEFIGSGGGTGIFKVPSRAAVHP-GRPPCLELRPHPLKETQAGRFLRNIA--CTDTQLWA-GQECGVRFWNLEDSYE- 187 (1133)
Q Consensus 113 p~g~~lasgs~dg~irlW~~~~~~~-g~~~~~~l~~H~~~~~~~g~~V~~v~--s~dg~lla-s~Dg~VrvWdl~~~~~- 187 (1133)
|+.+++++.+.+|.|+--....... +.. ...++... .+..+. +....++. +..|.+.-........
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~-~~~lke~D--------~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~ 73 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQ-DFAMKDTD--------RLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDI 73 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTC-CCCCCTTC--------CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBC
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCcc-ccccCCCC--------EEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCC
Confidence 4566889999999998654221100 111 12233332 344433 45555555 8888755544433111
Q ss_pred cCcCCCccccCCCCCCCceeeccCCCCeEEE-EEeC--CCCEEEEEeCCCeEEEEeCCCCCCCCCCCcccccccccCCCC
Q 043350 188 PGAGIGGRVRRGDEDAAPFYESANTSPTMCL-MVDC--GNRLVWTGHKDGKIRSWKMDQTLDDANNPFKEGLSWQAHRGP 264 (1133)
Q Consensus 188 ~~~gh~~~v~~g~~~~~~~~~~~h~s~V~~l-a~sp--d~~~LaSgs~Dg~V~vWd~~~~~~~~~~~~~~~~~l~gH~~~ 264 (1133)
.....+ ........+ .....|.++ ...+ ++..|+.++.+|.++--.+................+..- +.
T Consensus 74 ~r~a~G------~~i~~~i~L-~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~ 145 (323)
T 1wp5_A 74 RWKDLG------QHIANIIPI-DRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQ 145 (323)
T ss_dssp CTTSCC------EEGGGTSCC-CTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CC
T ss_pred CCCCCC------cChhhccCC-CCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CE
Confidence 000111 100000000 011234433 3332 356789999999999998753211000111122233322 56
Q ss_pred eEEEEEeeCCc-EEEEeCCCcEEEEeCCC
Q 043350 265 VLAMIFSSQGD-LWSGGEGGVIKIWPWES 292 (1133)
Q Consensus 265 V~sl~fsp~g~-L~Sgs~DgtI~iWdl~~ 292 (1133)
+..+......+ |+-.+.+|.+..++...
T Consensus 146 lv~~~~~~~~~~i~l~T~~G~~irf~~~e 174 (323)
T 1wp5_A 146 VVDVHLTDGMNELFLVTHNGYALWFDESE 174 (323)
T ss_dssp EEEEEEECSCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEEHHH
Confidence 66665554445 88888999888887653
Done!