BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043351
(218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 16 FNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSEQLVISSFDEKIKRLHISCKMYD 75
F++ RS +++ E + + + C + D+ Q L E D + R+H S K++D
Sbjct: 185 FDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLME-------DRQTNRMHESMKLFD 237
Query: 76 TV--HEFSQHLSEELFISS---FDEKVCHSILTLSFISVNSRNLLQELFGELTC 124
++ +++ S LF++ F+EK+ S LT+ + N +E + C
Sbjct: 238 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC 291
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 16 FNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSEQLVISSFDEKIKRLHISCKMYD 75
F++ RS +++ + + + C + D+ L+E DE++ R+H S K++D
Sbjct: 168 FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE-------DEEMNRMHESMKLFD 220
Query: 76 TV--HEFSQHLSEELFISS---FDEKVCHSILTLSFISVNSRNLLQELFGELTC 124
++ +++ S LF++ F+EK+ S LT+ + N +E + C
Sbjct: 221 SICNNKWFTETSIILFLNKKDLFEEKIKRSPLTICYPEYTGSNTYEEAAAYIQC 274
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 16 FNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSEQLVISSFDEKIKRLHISCKMYD 75
F++ RS +++ + + + C + D+ L+E DE++ R+H S K++D
Sbjct: 175 FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE-------DEEMNRMHESMKLFD 227
Query: 76 TV--HEFSQHLSEELFISS---FDEKVCHSILTLSFISVNSRNLLQELFGELTC 124
++ +++ S LF++ F+EK+ S LT+ + N +E + C
Sbjct: 228 SICNNKWFTETSIILFLNKKDLFEEKIKRSPLTICYPEYTGSNTYEEAAAYIQC 281
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 16 FNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSEQLVISSFDEKIKRLHISCKMYD 75
F++ RS +++ + + + C + D+ L+E DE++ R+H S K++D
Sbjct: 175 FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE-------DEEMNRMHESMKLFD 227
Query: 76 TV--HEFSQHLSEELFISS---FDEKVCHSILTLSFISVNSRNLLQELFGELTC 124
++ +++ S LF++ F+EK+ S LT+ + N +E + C
Sbjct: 228 SICNNKWFTETSIILFLNKKDLFEEKIKRSPLTICYPEYTGSNTYEEAAAYIQC 281
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 56/114 (49%), Gaps = 12/114 (10%)
Query: 16 FNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSEQLVISSFDEKIKRLHISCKMYD 75
F++ A RS +++ + + + C + D+ L+E DE++ R+H S K++D
Sbjct: 198 FDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE-------DEEMNRMHESMKLFD 250
Query: 76 TV--HEFSQHLSEELFISS---FDEKVCHSILTLSFISVNSRNLLQELFGELTC 124
++ +++ S LF++ F+EK+ S LT+ + N +E + C
Sbjct: 251 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC 304
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 62/134 (46%), Gaps = 32/134 (23%)
Query: 16 FNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSEQLVISSFDEKIKRLHISCKMYD 75
F++ RS +++ + + + C + D+ L+E DE++ R+H S K++D
Sbjct: 170 FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE-------DEEMNRMHESMKLFD 222
Query: 76 TV--HEFSQHLSEELFISS---FDEKVCHSILTL--------------------SFISVN 110
++ +++ S LF++ F+EK+ S LT+ F+ +N
Sbjct: 223 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAGNYIKVQFLELN 282
Query: 111 SRNLLQELFGELTC 124
R ++E++ +TC
Sbjct: 283 MRRDVKEIYSHMTC 296
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 16 FNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSEQLVISSFDEKIKRLHISCKMYD 75
F++ RS +++ + + + C + D+ L+E DE++ R+H S K++D
Sbjct: 198 FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE-------DEEMNRMHESMKLFD 250
Query: 76 TV--HEFSQHLSEELFISS---FDEKVCHSILTLSFISVNSRNLLQELFGELTC 124
++ +++ S LF++ F+EK+ S LT+ + N +E + C
Sbjct: 251 SICNNKWFTETSIILFLNKKDLFEEKIKRSPLTICYPEYTGSNTYEEAAAYIQC 304
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 16 FNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSEQLVISSFDEKIKRLHISCKMYD 75
F++ RS +++ + + + C + D+ L+E DE++ R+H S K++D
Sbjct: 173 FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE-------DEEMNRMHESMKLFD 225
Query: 76 TV--HEFSQHLSEELFISS---FDEKVCHSILTLSFISVNSRNLLQELFGELTC 124
++ +++ S LF++ F+EK+ S LT+ + N +E + C
Sbjct: 226 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC 279
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 16 FNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSEQLVISSFDEKIKRLHISCKMYD 75
F++ RS +++ + + + C + D+ L+E DE++ R+H S K++D
Sbjct: 170 FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE-------DEEMNRMHESMKLFD 222
Query: 76 TV--HEFSQHLSEELFISS---FDEKVCHSILTLSFISVNSRNLLQELFGELTC 124
++ +++ S LF++ F+EK+ S LT+ + N +E + C
Sbjct: 223 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC 276
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 16 FNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSEQLVISSFDEKIKRLHISCKMYD 75
F++ RS +++ + + + C + D+ L+E DE++ R+H S K++D
Sbjct: 168 FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE-------DEEMNRMHESMKLFD 220
Query: 76 TV--HEFSQHLSEELFISS---FDEKVCHSILTLSFISVNSRNLLQELFGELTC 124
++ +++ S LF++ F+EK+ S LT+ + N +E + C
Sbjct: 221 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC 274
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 16 FNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSEQLVISSFDEKIKRLHISCKMYD 75
F++ RS +++ + + + C + D+ L+E DE++ R+H S K++D
Sbjct: 169 FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE-------DEEMNRMHESMKLFD 221
Query: 76 TV--HEFSQHLSEELFISS---FDEKVCHSILTLSFISVNSRNLLQELFGELTC 124
++ +++ S LF++ F+EK+ S LT+ + N +E + C
Sbjct: 222 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC 275
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 16 FNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSEQLVISSFDEKIKRLHISCKMYD 75
F++ RS +++ + + + C + D+ L+E DE++ R+H S K++D
Sbjct: 201 FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE-------DEEMNRMHESMKLFD 253
Query: 76 TV--HEFSQHLSEELFISS---FDEKVCHSILTLSFISVNSRNLLQELFGELTC 124
++ +++ S LF++ F+EK+ S LT+ + N +E + C
Sbjct: 254 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC 307
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 16 FNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSEQLVISSFDEKIKRLHISCKMYD 75
F++ RS +++ + + + C + D+ L+E DE++ R+H S K++D
Sbjct: 167 FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE-------DEEMNRMHESMKLFD 219
Query: 76 TV--HEFSQHLSEELFISS---FDEKVCHSILTLSFISVNSRNLLQELFGELTC 124
++ +++ S LF++ F+EK+ S LT+ + N +E + C
Sbjct: 220 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC 273
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 16 FNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSEQLVISSFDEKIKRLHISCKMYD 75
F++ RS +++ + + + C + D+ L+E DE++ R+H S K++D
Sbjct: 168 FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE-------DEEMNRMHESMKLFD 220
Query: 76 TV--HEFSQHLSEELFISS---FDEKVCHSILTLSFISVNSRNLLQELFGELTC 124
++ +++ S LF++ F+EK+ S LT+ + N +E + C
Sbjct: 221 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC 274
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 30.0 bits (66), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 16 FNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSEQLVISSFDEKIKRLHISCKMYD 75
F++ RS +++ + + + C + D+ L+E DE++ R+H S K++D
Sbjct: 173 FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE-------DEEMNRMHESMKLFD 225
Query: 76 TV--HEFSQHLSEELFISS---FDEKVCHSILTLSFISVNSRNLLQELFGELTC 124
++ +++ S LF++ F+EK+ S LT+ + N +E + C
Sbjct: 226 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC 279
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 16 FNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSEQLVISSFDEKIKRLHISCKMYD 75
F++ RS +++ + + + C + D+ L+E DE++ R+H S K++D
Sbjct: 170 FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE-------DEEMNRMHESMKLFD 222
Query: 76 TV--HEFSQHLSEELFISS---FDEKVCHSILTLSFISVNSRNLLQELFGELTC 124
++ +++ S LF++ F+EK+ S LT+ + N +E + C
Sbjct: 223 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC 276
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 16 FNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSEQLVISSFDEKIKRLHISCKMYD 75
F++ RS +++ + + + C + D+ L+E DE++ R+H S K++D
Sbjct: 172 FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE-------DEEMNRMHESMKLFD 224
Query: 76 TV--HEFSQHLSEELFISS---FDEKVCHSILTLSFISVNSRNLLQELFGELTC 124
++ +++ S LF++ F+EK+ S LT+ + N +E + C
Sbjct: 225 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC 278
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 16 FNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSEQLVISSFDEKIKRLHISCKMYD 75
F++ RS +++ + + + C + D+ L+E DE++ R+H S K++D
Sbjct: 205 FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE-------DEEMNRMHESMKLFD 257
Query: 76 TV--HEFSQHLSEELFISS---FDEKVCHSILTLSFISVNSRNLLQELFGELTC 124
++ +++ S LF++ F+EK+ S LT+ + N +E + C
Sbjct: 258 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC 311
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 16 FNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSEQLVISSFDEKIKRLHISCKMYD 75
F++ RS +++ + + + C + D+ L+E DE++ R+H S K++D
Sbjct: 198 FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE-------DEEMNRMHESMKLFD 250
Query: 76 TV--HEFSQHLSEELFISS---FDEKVCHSILTLSFISVNSRNLLQELFGELTC 124
++ +++ S LF++ F+EK+ S LT+ + N +E + C
Sbjct: 251 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC 304
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 56/114 (49%), Gaps = 12/114 (10%)
Query: 16 FNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSEQLVISSFDEKIKRLHISCKMYD 75
F+++ RS +++ + + + C + D+ L+E DE++ R+H S K++D
Sbjct: 199 FDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE-------DEEMNRMHESMKLFD 251
Query: 76 TV--HEFSQHLSEELFISS---FDEKVCHSILTLSFISVNSRNLLQELFGELTC 124
++ +++ S LF++ F+EK+ S LT+ + N +E + C
Sbjct: 252 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC 305
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 16 FNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSEQLVISSFDEKIKRLHISCKMYD 75
F++ RS +++ + + + C + D+ L+E DE++ R+H S K++D
Sbjct: 174 FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE-------DEEMNRMHESMKLFD 226
Query: 76 TV--HEFSQHLSEELFISS---FDEKVCHSILTLSFISVNSRNLLQELFGELTC 124
++ +++ S LF++ F+EK+ S LT+ + N +E + C
Sbjct: 227 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC 280
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 16 FNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSEQLVISSFDEKIKRLHISCKMYD 75
F++ RS +++ + + + C + D+ L+E DE++ R+H S K++D
Sbjct: 175 FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE-------DEEMNRMHESMKLFD 227
Query: 76 TV--HEFSQHLSEELFISS---FDEKVCHSILTLSFISVNSRNLLQELFGELTC 124
++ +++ S LF++ F+EK+ S LT+ + N +E + C
Sbjct: 228 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC 281
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 16 FNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSEQLVISSFDEKIKRLHISCKMYD 75
F++ RS +++ + + + C + D+ L+E DE++ R+H S K++D
Sbjct: 199 FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE-------DEEMNRMHESMKLFD 251
Query: 76 TV--HEFSQHLSEELFISS---FDEKVCHSILTLSFISVNSRNLLQELFGELTC 124
++ +++ S LF++ F+EK+ S LT+ + N +E + C
Sbjct: 252 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC 305
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 16 FNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSEQLVISSFDEKIKRLHISCKMYD 75
F++ RS +++ + + + C + D+ L+E DE++ R+H S K++D
Sbjct: 198 FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE-------DEEMNRMHESMKLFD 250
Query: 76 TV--HEFSQHLSEELFISS---FDEKVCHSILTLSFISVNSRNLLQELFGELTC 124
++ +++ S LF++ F+EK+ S LT+ + N +E + C
Sbjct: 251 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC 304
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 16 FNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSEQLVISSFDEKIKRLHISCKMYD 75
F++ RS +++ + + + C + D+ L+E DE++ R+H S K++D
Sbjct: 198 FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE-------DEEMNRMHESMKLFD 250
Query: 76 TV--HEFSQHLSEELFISS---FDEKVCHSILTLSFISVNSRNLLQELFGELTC 124
++ +++ S LF++ F+EK+ S LT+ + N +E + C
Sbjct: 251 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC 304
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 16 FNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSEQLVISSFDEKIKRLHISCKMYD 75
F++ RS +++ + + + C + D+ L+E DE++ R+H S K++D
Sbjct: 198 FDVGGLRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE-------DEEMNRMHESMKLFD 250
Query: 76 TV--HEFSQHLSEELFISS---FDEKVCHSILTLSFISVNSRNLLQELFGELTC 124
++ +++ S LF++ F+EK+ S LT+ + N +E + C
Sbjct: 251 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC 304
>pdb|3NE4|A Chain A, 1.8 Angstrom Structure Of Intact Native Wild-Type
Alpha-1-Antitrypsin
Length = 424
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 82 QHLSEEL---FISSF--DEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFE 136
QHL EL I+ F +E + L L +S+ L+ + G+L + N +
Sbjct: 291 QHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFS---NGAD 347
Query: 137 SNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGV-FVNTIIM 176
+ + +E P + K VH L + +K E G F+ I M
Sbjct: 348 LSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPM 388
>pdb|2D26|A Chain A, Active Site Distortion Is Sufficient For Proteinase
Inhibit Second Crystal Structure Of Covalent
Serpin-Proteinase Complex
Length = 358
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 82 QHLSEEL---FISSF--DEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFE 136
QHL EL I+ F +E + L L +S+ L+ + G+L + N +
Sbjct: 261 QHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFS---NGAD 317
Query: 137 SNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGV-FVNTIIM 176
+ + +E P + K VH L + +K E G F+ I M
Sbjct: 318 LSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPM 358
>pdb|1IZ2|A Chain A, Interactions Causing The Kinetic Trap In Serpin Protein
Folding
Length = 394
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 82 QHLSEEL---FISSF--DEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFE 136
QHL EL I+ F +E + L L +S+ L+ + G+L + N +
Sbjct: 261 QHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFS---NGAD 317
Query: 137 SNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGV-FVNTIIM 176
+ + +E P + K VH L + +K E G F+ I M
Sbjct: 318 LSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPM 358
>pdb|1QLP|A Chain A, 2.0 Angstrom Structure Of Intact Alpha-1-Antitrypsin: A
Canonical Template For Active Serpins
Length = 394
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 82 QHLSEEL---FISSF--DEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFE 136
QHL EL I+ F +E + L L +S+ L+ + G+L + N +
Sbjct: 261 QHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFS---NGAD 317
Query: 137 SNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGV-FVNTIIM 176
+ + +E P + K VH L + +K E G F+ I M
Sbjct: 318 LSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPM 358
>pdb|1KCT|A Chain A, Alpha1-Antitrypsin
Length = 394
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 82 QHLSEEL---FISSF--DEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFE 136
QHL EL I+ F +E + L L +S+ L+ + G+L + N +
Sbjct: 261 QHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFS---NGAD 317
Query: 137 SNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGV-FVNTIIM 176
+ + +E P + K VH L + +K E G F+ I M
Sbjct: 318 LSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPM 358
>pdb|7API|A Chain A, The S Variant Of Human Alpha1-Antitrypsin, Structure And
Implications For Function And Metabolism
pdb|8API|A Chain A, The S Variant Of Human Alpha1-antitrypsin, Structure And
Implications For Function And Metabolism
pdb|9API|A Chain A, The S Variant Of Human Alpha1-Antitrypsin, Structure And
Implications For Function And Metabolism
Length = 347
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 82 QHLSEEL---FISSF--DEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFE 136
QHL EL I+ F +E + L L +S+ L+ + G+L + N +
Sbjct: 250 QHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFS---NGAD 306
Query: 137 SNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGV-FVNTIIM 176
+ + +E P + K VH L + +K E G F+ I M
Sbjct: 307 LSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPM 347
>pdb|1PSI|A Chain A, Intact Recombined Alpha1-Antitrypsin Mutant Phe 51 To Leu
Length = 394
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 82 QHLSEEL---FISSF--DEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFE 136
QHL EL I+ F +E + L L +S+ L+ + G+L + N +
Sbjct: 261 QHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFS---NGAD 317
Query: 137 SNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGV-FVNTIIM 176
+ + +E P + K VH L + +K E G F+ I M
Sbjct: 318 LSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPM 358
>pdb|3DRU|A Chain A, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
pdb|3DRU|B Chain B, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
pdb|3DRU|C Chain C, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
Length = 404
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 82 QHLSEEL---FISSF--DEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFE 136
QHL EL I+ F +E + L L +S+ L+ + G+L + N +
Sbjct: 271 QHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFS---NGAD 327
Query: 137 SNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGV-FVNTIIM 176
+ + +E P + K VH L + +K E G F+ I M
Sbjct: 328 LSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPM 368
>pdb|3DRM|A Chain A, 2.2 Angstrom Crystal Structure Of Thr114phe Alpha1-
Antitrypsin
Length = 404
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 82 QHLSEEL---FISSF--DEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFE 136
QHL EL I+ F +E + L L +S+ L+ + G+L + N +
Sbjct: 271 QHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFS---NGAD 327
Query: 137 SNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGV-FVNTIIM 176
+ + +E P + K VH L + +K E G F+ I M
Sbjct: 328 LSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPM 368
>pdb|2QUG|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin, Crystal Form A
pdb|3CWL|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin, Crystal Form B
pdb|3CWM|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin Complexed With
Citrate
Length = 394
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 82 QHLSEEL---FISSF--DEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFE 136
QHL EL I+ F +E + L L +S+ L+ + G+L + N +
Sbjct: 261 QHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFS---NGAD 317
Query: 137 SNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGV-FVNTIIM 176
+ + +E P + K VH L + +K E G F+ I M
Sbjct: 318 LSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPM 358
>pdb|1EZX|A Chain A, Crystal Structure Of A Serpin:protease Complex
Length = 335
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 82 QHLSEEL---FISSF--DEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFE 136
QHL EL I+ F +E + L L +S+ L+ + G+L + N +
Sbjct: 238 QHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFS---NGAD 294
Query: 137 SNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGV-FVNTIIM 176
+ + +E P + K VH L + +K E G F+ I M
Sbjct: 295 LSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPM 335
>pdb|1HP7|A Chain A, A 2.1 Angstrom Structure Of An Uncleaved
Alpha-1-Antitrypsin Shows Variability Of The Reactive
Center And Other Loops
Length = 394
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 82 QHLSEEL---FISSF--DEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFE 136
QHL EL I+ F +E + L L +S+ L+ + G+L + N +
Sbjct: 261 QHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFS---NGAD 317
Query: 137 SNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGV-FVNTIIM 176
+ + +E P + K VH L + +K E G F+ I M
Sbjct: 318 LSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPM 358
>pdb|1ATU|A Chain A, Uncleaved Alpha-1-Antitrypsin
Length = 374
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 82 QHLSEEL---FISSF--DEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFE 136
QHL EL I+ F +E + L L +S+ L+ + G+L + N +
Sbjct: 241 QHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFS---NGAD 297
Query: 137 SNNLIKEIPPNVGKLVHLRYLNLSDKFIETTG-VFVNTIIM 176
+ + +E P + K VH L + +K E G +F+ I M
Sbjct: 298 LSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPM 338
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 138 NNLIKEIPPNVGKLVHLRYL 157
NNL+ IPP + KL L YL
Sbjct: 87 NNLVGPIPPAIAKLTQLHYL 106
>pdb|1QMB|A Chain A, Cleaved Alpha-1-Antitrypsin Polymer
Length = 326
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 82 QHLSEEL---FISSFDEKVCHSI-LTLSFISVNSRNLLQELFGELTCLRALCISNNSFES 137
QHL EL I+ F E S L L +S+ L+ + G+L + N +
Sbjct: 236 QHLENELTHDIITKFLENDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFS---NGADL 292
Query: 138 NNLIKEIPPNVGKLVHLRYLNLSDKFIETTGV 169
+ + +E P + K VH L + +K E G
Sbjct: 293 SGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGA 324
>pdb|1D5S|A Chain A, Crystal Structure Of Cleaved Antitrypsin Polymer
Length = 334
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 82 QHLSEEL---FISSF--DEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFE 136
QHL EL I+ F +E + L L +S+ L+ + G+L + N +
Sbjct: 242 QHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFS---NGAD 298
Query: 137 SNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGV 169
+ + +E P + K VH L + +K E G
Sbjct: 299 LSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGA 331
>pdb|3NDF|A Chain A, Cleaved Antitrypsin With P8-P6 Asp
Length = 343
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 82 QHLSEEL---FISSF--DEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFE 136
QHL EL I+ F +E + L L +S+ L+ + G+L + N +
Sbjct: 246 QHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFS---NGAD 302
Query: 137 SNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGV 169
+ + +E P + K VH L + +K E G
Sbjct: 303 LSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGA 335
>pdb|1OO8|A Chain A, Crystal Structure Of A1pi-Pittsburgh In The Native
Conformation
pdb|1OPH|A Chain A, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And
S195a Trypsin
Length = 394
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 82 QHLSEEL---FISSF--DEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFE 136
QHL EL I+ F +E + L L +S+ L+ + G+L + N +
Sbjct: 261 QHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFS---NGAD 317
Query: 137 SNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGV 169
+ + +E P + K VH L + +K E G
Sbjct: 318 LSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGA 350
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 24/127 (18%)
Query: 92 SFDEKVCHSILTLSFISVN-SRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGK 150
S+DEK T S +S+N S N+L + R + +S N IK IP V K
Sbjct: 387 SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHS----NKIKSIPKQVVK 442
Query: 151 LVHLRYLNLS------------DKFIETTGVFVNTIIMPCLSSFQIESCPKLKMLPYYLL 198
L L+ LN++ D+ ++++T C SCP++ L +L
Sbjct: 443 LEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC-------SCPRIDYLSRWLN 495
Query: 199 QTTKLQE 205
+ ++ ++
Sbjct: 496 KNSQKEQ 502
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 16 FNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSEQLVISSFDEKIKRLHISCKMYD 75
F++ RS +++ + + + C + D+ L+E DE++ R+H S K++D
Sbjct: 199 FDVDGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE-------DEEMNRMHESMKLFD 251
Query: 76 TV--HEFSQHLSEELFISS---FDEKVCHSILTLSFISVNSRNLLQELFGELTC 124
++ ++ S LF++ F+EK+ S LT+ + N +E + C
Sbjct: 252 SICNNKCFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC 305
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 104 LSFISVNSRNLLQEL---FGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLS 160
L++IS+++ L E+ G L L L +SNNSF N IP +G L +L+L+
Sbjct: 489 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN-----IPAELGDCRSLIWLDLN 543
Query: 161 DKFIETT 167
T
Sbjct: 544 TNLFNGT 550
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,951,458
Number of Sequences: 62578
Number of extensions: 217009
Number of successful extensions: 717
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 681
Number of HSP's gapped (non-prelim): 64
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)