Query 043351
Match_columns 218
No_of_seqs 263 out of 2353
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 04:11:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 99.9 1.4E-24 3.1E-29 197.9 8.3 189 2-212 437-653 (889)
2 PLN03210 Resistant to P. syrin 99.7 2.6E-16 5.6E-21 149.4 11.7 35 15-55 471-506 (1153)
3 KOG0617 Ras suppressor protein 99.5 2.2E-15 4.8E-20 111.2 -2.7 115 86-212 69-184 (264)
4 PLN00113 leucine-rich repeat r 99.4 3.8E-13 8.3E-18 126.3 6.9 116 87-212 155-271 (968)
5 PLN00113 leucine-rich repeat r 99.4 7.5E-13 1.6E-17 124.3 6.6 117 86-212 178-295 (968)
6 KOG0617 Ras suppressor protein 99.3 2.9E-13 6.3E-18 100.1 -2.0 131 59-212 76-210 (264)
7 KOG0472 Leucine-rich repeat pr 99.3 7.9E-13 1.7E-17 109.0 0.1 108 92-213 431-540 (565)
8 KOG0444 Cytoskeletal regulator 99.2 4.8E-13 1E-17 115.9 -2.7 129 63-214 56-186 (1255)
9 PLN03210 Resistant to P. syrin 99.2 3.6E-11 7.8E-16 114.7 8.7 114 88-216 604-719 (1153)
10 KOG0472 Leucine-rich repeat pr 99.1 1.1E-12 2.3E-17 108.3 -6.9 112 86-213 196-309 (565)
11 KOG0444 Cytoskeletal regulator 99.0 4.3E-12 9.3E-17 110.1 -5.7 119 88-212 214-350 (1255)
12 PLN03150 hypothetical protein; 99.0 5.4E-10 1.2E-14 100.3 7.4 106 98-213 420-527 (623)
13 PF14580 LRR_9: Leucine-rich r 99.0 6.5E-10 1.4E-14 83.8 4.0 101 95-208 41-147 (175)
14 PF14580 LRR_9: Leucine-rich r 98.9 6.5E-10 1.4E-14 83.8 2.6 108 92-215 15-127 (175)
15 PLN03150 hypothetical protein; 98.9 3E-09 6.6E-14 95.5 6.3 99 86-194 432-532 (623)
16 KOG0618 Serine/threonine phosp 98.8 2.2E-10 4.7E-15 103.0 -2.2 83 119-212 379-463 (1081)
17 KOG0532 Leucine-rich repeat (L 98.8 2.2E-10 4.9E-15 98.3 -2.7 112 86-212 134-245 (722)
18 PF13855 LRR_8: Leucine rich r 98.7 1.3E-08 2.7E-13 63.4 4.0 56 153-212 2-60 (61)
19 KOG4194 Membrane glycoprotein 98.7 2.5E-09 5.4E-14 92.4 0.8 132 61-214 268-429 (873)
20 PRK15370 E3 ubiquitin-protein 98.7 2.5E-08 5.3E-13 90.9 6.5 103 60-195 197-300 (754)
21 cd00116 LRR_RI Leucine-rich re 98.7 2E-08 4.4E-13 82.6 5.1 116 96-213 137-262 (319)
22 KOG4194 Membrane glycoprotein 98.7 2.5E-08 5.5E-13 86.3 5.5 116 86-214 115-234 (873)
23 PF13855 LRR_8: Leucine rich r 98.7 4E-08 8.6E-13 61.1 4.6 57 123-188 1-60 (61)
24 KOG0618 Serine/threonine phosp 98.6 7.2E-09 1.6E-13 93.5 -0.2 112 87-213 374-488 (1081)
25 KOG1259 Nischarin, modulator o 98.6 7.1E-09 1.5E-13 83.3 -0.8 83 120-213 326-411 (490)
26 PRK15370 E3 ubiquitin-protein 98.6 1.5E-07 3.2E-12 85.9 7.3 117 62-213 178-295 (754)
27 PRK15387 E3 ubiquitin-protein 98.6 8.2E-08 1.8E-12 87.5 5.3 75 123-213 382-457 (788)
28 PF12799 LRR_4: Leucine Rich r 98.5 1.5E-07 3.2E-12 54.4 3.7 38 123-166 1-38 (44)
29 KOG1259 Nischarin, modulator o 98.5 2.4E-08 5.2E-13 80.3 0.3 106 92-213 280-386 (490)
30 KOG4658 Apoptotic ATPase [Sign 98.5 9.3E-08 2E-12 88.5 4.1 110 93-215 520-632 (889)
31 cd00116 LRR_RI Leucine-rich re 98.5 1.2E-07 2.7E-12 78.0 3.9 141 61-213 80-233 (319)
32 KOG0532 Leucine-rich repeat (L 98.4 2E-08 4.4E-13 86.5 -2.3 113 86-214 111-224 (722)
33 COG4886 Leucine-rich repeat (L 98.4 1.3E-07 2.8E-12 80.5 2.3 78 124-211 141-219 (394)
34 COG4886 Leucine-rich repeat (L 98.4 1.3E-07 2.9E-12 80.4 2.3 42 119-166 159-200 (394)
35 PF12799 LRR_4: Leucine Rich r 98.3 7.4E-07 1.6E-11 51.5 3.0 39 152-194 1-40 (44)
36 PRK15387 E3 ubiquitin-protein 98.3 2.5E-06 5.5E-11 77.9 7.7 34 124-166 283-316 (788)
37 KOG4579 Leucine-rich repeat (L 98.1 4.3E-07 9.3E-12 65.2 -0.8 93 90-196 47-141 (177)
38 KOG3665 ZYG-1-like serine/thre 98.1 3.6E-06 7.7E-11 76.4 4.2 132 62-215 122-264 (699)
39 KOG4237 Extracellular matrix p 98.0 4.6E-07 9.9E-12 75.3 -3.3 131 59-212 64-199 (498)
40 KOG3207 Beta-tubulin folding c 97.9 7E-06 1.5E-10 69.1 2.6 111 95-217 196-316 (505)
41 KOG1859 Leucine-rich repeat pr 97.9 8.8E-07 1.9E-11 78.7 -2.8 92 110-213 174-266 (1096)
42 KOG0531 Protein phosphatase 1, 97.9 4.5E-06 9.7E-11 71.7 1.3 109 90-214 89-199 (414)
43 PRK15386 type III secretion pr 97.9 3.9E-05 8.4E-10 65.2 6.4 114 62-211 52-187 (426)
44 KOG3207 Beta-tubulin folding c 97.8 5.9E-06 1.3E-10 69.5 1.4 134 60-213 195-338 (505)
45 KOG4237 Extracellular matrix p 97.8 6.2E-06 1.3E-10 68.7 1.2 89 116-213 267-358 (498)
46 PRK15386 type III secretion pr 97.8 2.9E-05 6.3E-10 65.9 5.1 106 89-214 45-169 (426)
47 KOG0531 Protein phosphatase 1, 97.8 9.8E-06 2.1E-10 69.6 1.9 86 117-214 89-175 (414)
48 KOG3665 ZYG-1-like serine/thre 97.7 2E-05 4.4E-10 71.6 2.7 109 95-214 121-233 (699)
49 KOG4579 Leucine-rich repeat (L 97.6 1.1E-05 2.3E-10 58.1 -0.9 60 97-166 78-137 (177)
50 KOG1859 Leucine-rich repeat pr 97.5 3.3E-06 7.2E-11 75.2 -5.0 109 88-213 179-291 (1096)
51 KOG1909 Ran GTPase-activating 97.3 0.00015 3.3E-09 59.6 2.9 148 58-213 153-310 (382)
52 KOG2120 SCF ubiquitin ligase, 97.3 8.6E-05 1.9E-09 60.1 0.8 121 87-212 225-374 (419)
53 KOG1644 U2-associated snRNP A' 97.1 0.001 2.2E-08 51.0 4.7 86 119-212 60-151 (233)
54 PF00560 LRR_1: Leucine Rich R 96.9 0.00047 1E-08 33.4 1.3 19 154-175 2-20 (22)
55 KOG2739 Leucine-rich acidic nu 96.8 0.00087 1.9E-08 53.1 2.5 88 119-211 61-153 (260)
56 KOG1644 U2-associated snRNP A' 96.7 0.002 4.3E-08 49.4 4.0 77 125-212 44-124 (233)
57 KOG2982 Uncharacterized conser 96.7 0.0009 1.9E-08 54.3 2.0 88 94-188 69-157 (418)
58 PF00560 LRR_1: Leucine Rich R 96.6 0.0011 2.4E-08 32.0 1.2 22 124-151 1-22 (22)
59 KOG2739 Leucine-rich acidic nu 96.5 0.0012 2.6E-08 52.3 1.5 91 90-188 59-154 (260)
60 KOG1909 Ran GTPase-activating 96.4 0.0046 1E-07 51.1 4.3 124 89-214 150-283 (382)
61 KOG0473 Leucine-rich repeat pr 96.3 8E-05 1.7E-09 58.2 -6.0 86 119-214 38-124 (326)
62 KOG2123 Uncharacterized conser 95.7 0.00084 1.8E-08 54.0 -3.0 60 119-188 37-99 (388)
63 PF13504 LRR_7: Leucine rich r 95.5 0.0096 2.1E-07 26.8 1.5 13 154-166 3-15 (17)
64 KOG2982 Uncharacterized conser 95.4 0.0076 1.6E-07 49.1 1.4 84 120-212 68-157 (418)
65 PF13504 LRR_7: Leucine rich r 95.2 0.015 3.2E-07 26.1 1.6 17 123-145 1-17 (17)
66 KOG2123 Uncharacterized conser 94.9 0.0014 3.1E-08 52.7 -3.9 81 121-213 17-100 (388)
67 smart00370 LRR Leucine-rich re 94.1 0.04 8.6E-07 27.5 1.7 19 152-173 2-20 (26)
68 smart00369 LRR_TYP Leucine-ric 94.1 0.04 8.6E-07 27.5 1.7 19 152-173 2-20 (26)
69 KOG0473 Leucine-rich repeat pr 93.4 0.0015 3.2E-08 51.4 -6.4 85 91-188 37-122 (326)
70 smart00369 LRR_TYP Leucine-ric 92.2 0.1 2.2E-06 25.9 1.5 21 122-148 1-21 (26)
71 smart00370 LRR Leucine-rich re 92.2 0.1 2.2E-06 25.9 1.5 21 122-148 1-21 (26)
72 KOG2120 SCF ubiquitin ligase, 92.1 0.057 1.2E-06 44.2 0.7 61 119-188 309-374 (419)
73 PF13306 LRR_5: Leucine rich r 91.8 0.55 1.2E-05 32.8 5.5 102 91-210 7-112 (129)
74 KOG3864 Uncharacterized conser 89.4 0.062 1.3E-06 41.4 -1.3 83 97-187 102-186 (221)
75 PF13306 LRR_5: Leucine rich r 88.8 1 2.2E-05 31.5 4.8 98 89-203 28-128 (129)
76 COG5238 RNA1 Ran GTPase-activa 88.4 2.2 4.8E-05 34.8 6.7 47 88-134 84-131 (388)
77 PF14162 YozD: YozD-like prote 85.6 0.95 2.1E-05 26.5 2.4 22 8-29 10-31 (57)
78 COG5238 RNA1 Ran GTPase-activa 85.4 2.8 6E-05 34.3 5.7 95 61-166 29-134 (388)
79 smart00364 LRR_BAC Leucine-ric 84.7 0.63 1.4E-05 23.3 1.2 14 153-166 3-16 (26)
80 smart00365 LRR_SD22 Leucine-ri 82.7 1.2 2.7E-05 22.3 1.8 15 152-166 2-16 (26)
81 KOG3864 Uncharacterized conser 82.7 0.64 1.4E-05 35.9 1.1 68 88-162 117-186 (221)
82 KOG1947 Leucine rich repeat pr 82.7 0.71 1.5E-05 39.9 1.6 112 95-214 187-308 (482)
83 KOG1947 Leucine rich repeat pr 81.3 0.74 1.6E-05 39.8 1.2 117 90-210 208-330 (482)
84 KOG4341 F-box protein containi 80.0 1.2 2.5E-05 38.3 1.9 63 150-212 370-437 (483)
85 PF13516 LRR_6: Leucine Rich r 77.0 1.8 3.9E-05 20.8 1.4 14 200-213 1-14 (24)
86 smart00367 LRR_CC Leucine-rich 73.5 2.6 5.5E-05 20.8 1.4 15 201-215 2-16 (26)
87 smart00368 LRR_RI Leucine rich 71.2 3.5 7.6E-05 20.8 1.6 15 152-166 2-16 (28)
88 KOG4341 F-box protein containi 70.6 1.7 3.7E-05 37.3 0.5 112 94-207 344-458 (483)
89 PF05597 Phasin: Poly(hydroxya 62.7 4.4 9.6E-05 29.1 1.3 23 3-25 25-50 (132)
90 KOG3763 mRNA export factor TAP 56.9 5.6 0.00012 35.4 1.2 62 120-188 215-281 (585)
91 TIGR01837 PHA_granule_1 poly(h 55.9 7.4 0.00016 27.3 1.5 28 2-29 11-41 (118)
92 COG3432 Predicted transcriptio 33.9 1.5E+02 0.0032 20.0 5.0 41 7-49 43-83 (95)
93 PF11112 PyocinActivator: Pyoc 33.0 31 0.00066 22.2 1.5 46 8-53 17-70 (76)
94 KOG4667 Predicted esterase [Li 31.1 86 0.0019 24.9 3.9 65 9-75 147-211 (269)
95 KOG3763 mRNA export factor TAP 30.6 46 0.00099 29.9 2.6 67 94-166 216-284 (585)
96 PF13463 HTH_27: Winged helix 29.4 1.2E+02 0.0025 18.2 3.8 32 9-40 32-64 (68)
97 PF13730 HTH_36: Helix-turn-he 25.2 62 0.0013 18.7 1.9 20 6-25 36-55 (55)
98 smart00446 LRRcap occurring C- 21.4 58 0.0013 16.3 1.0 15 118-132 8-22 (26)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.91 E-value=1.4e-24 Score=197.92 Aligned_cols=189 Identities=22% Similarity=0.270 Sum_probs=156.1
Q ss_pred cccchh---------HHHHHHHHHHHHHhCCCccccccCCCCeeeEEeChhHHHHHHHHHH-hhcc--------------
Q 043351 2 IVGLGM---------CIVLLSSYFNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSE-QLVI-------------- 57 (218)
Q Consensus 2 ~~g~g~---------~e~~~~~y~~~L~~rsli~~~~~~~~~~~~~~mHdl~~dl~~~i~~-~~~~-------------- 57 (218)
|++.|+ ++++|++|+.+|++|+|++..+.. ++..+|+|||+|||+|.++|+ .+..
T Consensus 437 WiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~-~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~ 515 (889)
T KOG4658|consen 437 WIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE-GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSE 515 (889)
T ss_pred HHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc-cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccc
Confidence 677774 478999999999999999987754 667899999999999999998 4332
Q ss_pred ---cccCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCC
Q 043351 58 ---SSFDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNS 134 (218)
Q Consensus 58 ---~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 134 (218)
...+..+|++++..+.. ...+... ..+.|++|.+..+.. ......+..|..++.||+|||++|.
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~-----------~~~~~~~-~~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~ 582 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKI-----------EHIAGSS-ENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNS 582 (889)
T ss_pred cccccchhheeEEEEeccch-----------hhccCCC-CCCccceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCC
Confidence 22345678999988776 3344433 444799999988642 2445566778999999999999988
Q ss_pred CcccccccccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCC
Q 043351 135 FESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCH 212 (218)
Q Consensus 135 ~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~ 212 (218)
. +.++|.+|+.|.|||||+++++.+.. +|.++++|. |++|++..+..+..+|..+..|++||+|.+....
T Consensus 583 ~-----l~~LP~~I~~Li~LryL~L~~t~I~~---LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 583 S-----LSKLPSSIGELVHLRYLDLSDTGISH---LPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred c-----cCcCChHHhhhhhhhcccccCCCccc---cchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 6 99999999999999999999999999 999999999 9999999988787787666779999999987764
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.68 E-value=2.6e-16 Score=149.38 Aligned_cols=35 Identities=6% Similarity=0.052 Sum_probs=29.6
Q ss_pred HHHHHHhCCCccccccCCCCeeeEEeChhHHHHHHHHHH-hh
Q 043351 15 YFNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSE-QL 55 (218)
Q Consensus 15 y~~~L~~rsli~~~~~~~~~~~~~~mHdl~~dl~~~i~~-~~ 55 (218)
-++.|+++|||+... ..++|||++|++|+.+++ +.
T Consensus 471 ~l~~L~~ksLi~~~~------~~~~MHdLl~~~~r~i~~~~~ 506 (1153)
T PLN03210 471 GLKNLVDKSLIHVRE------DIVEMHSLLQEMGKEIVRAQS 506 (1153)
T ss_pred ChHHHHhcCCEEEcC------CeEEhhhHHHHHHHHHHHhhc
Confidence 388899999998754 258999999999999998 63
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=2.2e-15 Score=111.18 Aligned_cols=115 Identities=25% Similarity=0.223 Sum_probs=84.5
Q ss_pred hhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCcc
Q 043351 86 EELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIE 165 (218)
Q Consensus 86 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~ 165 (218)
...|.+++.+++||.|.+.- +....+|..|+.++.|.+|||++|..- -..+|..+-.+..||.|.++.|.++
T Consensus 69 e~lp~~issl~klr~lnvgm----nrl~~lprgfgs~p~levldltynnl~----e~~lpgnff~m~tlralyl~dndfe 140 (264)
T KOG0617|consen 69 EELPTSISSLPKLRILNVGM----NRLNILPRGFGSFPALEVLDLTYNNLN----ENSLPGNFFYMTTLRALYLGDNDFE 140 (264)
T ss_pred hhcChhhhhchhhhheecch----hhhhcCccccCCCchhhhhhccccccc----cccCCcchhHHHHHHHHHhcCCCcc
Confidence 45566666666666666654 234556666777777777777777621 1246666666666777777777777
Q ss_pred ccccccccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCC
Q 043351 166 TTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCH 212 (218)
Q Consensus 166 ~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~ 212 (218)
. +|+.+++|. ||.|.+++|. +-++|.+++.|+.|+.|.+.+|+
T Consensus 141 ~---lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 141 I---LPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred c---CChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccce
Confidence 7 899999999 9999999888 77899999999999999999886
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.40 E-value=3.8e-13 Score=126.32 Aligned_cols=116 Identities=17% Similarity=0.159 Sum_probs=58.8
Q ss_pred hhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccc
Q 043351 87 ELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIET 166 (218)
Q Consensus 87 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~ 166 (218)
..|..+..+++|+.|.+.++. .....|..+.++++|++|++++|.. ...+|..++++++|++|++++|.+
T Consensus 155 ~~p~~~~~l~~L~~L~L~~n~---l~~~~p~~~~~l~~L~~L~L~~n~l-----~~~~p~~l~~l~~L~~L~L~~n~l-- 224 (968)
T PLN00113 155 EIPNDIGSFSSLKVLDLGGNV---LVGKIPNSLTNLTSLEFLTLASNQL-----VGQIPRELGQMKSLKWIYLGYNNL-- 224 (968)
T ss_pred cCChHHhcCCCCCEEECccCc---ccccCChhhhhCcCCCeeeccCCCC-----cCcCChHHcCcCCccEEECcCCcc--
Confidence 345555566666666665542 2234455555555556665555553 334455555555555555555554
Q ss_pred cccccccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCC
Q 043351 167 TGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCH 212 (218)
Q Consensus 167 ~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~ 212 (218)
.+.+|..++++. |++|++++|.....+|..++++++|+.|++++|.
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCe
Confidence 223455555555 5555555554333444444555555555554443
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.37 E-value=7.5e-13 Score=124.33 Aligned_cols=117 Identities=17% Similarity=0.129 Sum_probs=66.7
Q ss_pred hhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCcc
Q 043351 86 EELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIE 165 (218)
Q Consensus 86 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~ 165 (218)
+..|..+.++++|++|.+.++. .....|..++.+++|+.|++++|.. ...+|..++++++|++|++++|.+
T Consensus 178 ~~~p~~~~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~L~~n~l-----~~~~p~~l~~l~~L~~L~L~~n~l- 248 (968)
T PLN00113 178 GKIPNSLTNLTSLEFLTLASNQ---LVGQIPRELGQMKSLKWIYLGYNNL-----SGEIPYEIGGLTSLNHLDLVYNNL- 248 (968)
T ss_pred ccCChhhhhCcCCCeeeccCCC---CcCcCChHHcCcCCccEEECcCCcc-----CCcCChhHhcCCCCCEEECcCcee-
Confidence 3456667777777777776652 2334555566666666666666663 334555566666666666666554
Q ss_pred ccccccccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCC
Q 043351 166 TTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCH 212 (218)
Q Consensus 166 ~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~ 212 (218)
.|.+|..++++. |++|++++|.....+|..+.++++|++|++++|.
T Consensus 249 -~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 249 -TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred -ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 223555555555 5555555555333455555555555555555554
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.26 E-value=2.9e-13 Score=100.08 Aligned_cols=131 Identities=24% Similarity=0.198 Sum_probs=109.9
Q ss_pred ccCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccc
Q 043351 59 SFDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESN 138 (218)
Q Consensus 59 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~ 138 (218)
....+.|++.+..+.. ...|..|+.++.|+.|++.++.. ....+|..|-.|..||.|.|+.|.
T Consensus 76 ssl~klr~lnvgmnrl-----------~~lprgfgs~p~levldltynnl--~e~~lpgnff~m~tlralyl~dnd---- 138 (264)
T KOG0617|consen 76 SSLPKLRILNVGMNRL-----------NILPRGFGSFPALEVLDLTYNNL--NENSLPGNFFYMTTLRALYLGDND---- 138 (264)
T ss_pred hhchhhhheecchhhh-----------hcCccccCCCchhhhhhcccccc--ccccCCcchhHHHHHHHHHhcCCC----
Confidence 3456788888877666 55789999999999999998753 345778888889999999999999
Q ss_pred ccccccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCchhhcCCCC---CcEEeccCCC
Q 043351 139 NLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTK---LQELKIYLCH 212 (218)
Q Consensus 139 ~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~---L~~L~l~~~~ 212 (218)
.+-+|+.+++|++|+.|.++.|.+-+ +|.+++.|. |+.|.+.+|. +..+|++++++.- =+.+.+..|+
T Consensus 139 --fe~lp~dvg~lt~lqil~lrdndll~---lpkeig~lt~lrelhiqgnr-l~vlppel~~l~l~~~k~v~r~E~NP 210 (264)
T KOG0617|consen 139 --FEILPPDVGKLTNLQILSLRDNDLLS---LPKEIGDLTRLRELHIQGNR-LTVLPPELANLDLVGNKQVMRMEENP 210 (264)
T ss_pred --cccCChhhhhhcceeEEeeccCchhh---CcHHHHHHHHHHHHhcccce-eeecChhhhhhhhhhhHHHHhhhhCC
Confidence 88999999999999999999999888 999999999 9999999988 9999999877642 2445555554
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.26 E-value=7.9e-13 Score=109.02 Aligned_cols=108 Identities=21% Similarity=0.177 Sum_probs=67.8
Q ss_pred ccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCcccccccc
Q 043351 92 SFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFV 171 (218)
Q Consensus 92 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp 171 (218)
++.+++|..|.+++ +....+|..++.+..||.|+++.|+ .+.+|..+..+.-|+.+-.++|++.. +|
T Consensus 431 l~~l~kLt~L~L~N----N~Ln~LP~e~~~lv~Lq~LnlS~Nr------Fr~lP~~~y~lq~lEtllas~nqi~~---vd 497 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSN----NLLNDLPEEMGSLVRLQTLNLSFNR------FRMLPECLYELQTLETLLASNNQIGS---VD 497 (565)
T ss_pred HHhhhcceeeeccc----chhhhcchhhhhhhhhheecccccc------cccchHHHhhHHHHHHHHhccccccc---cC
Confidence 33444444444444 2334444444444444444444444 44444444444444444444444444 55
Q ss_pred cc-ccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCc
Q 043351 172 NT-IIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 172 ~~-i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
++ ++++. |.+||+.+|. +..+|+.+++|++|++|++.+|++
T Consensus 498 ~~~l~nm~nL~tLDL~nNd-lq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 498 PSGLKNMRNLTTLDLQNND-LQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hHHhhhhhhcceeccCCCc-hhhCChhhccccceeEEEecCCcc
Confidence 44 88999 9999999877 999999999999999999999985
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.23 E-value=4.8e-13 Score=115.87 Aligned_cols=129 Identities=23% Similarity=0.213 Sum_probs=102.0
Q ss_pred ceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccccccc
Q 043351 63 KIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIK 142 (218)
Q Consensus 63 ~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~ 142 (218)
+..||++..+.. ..+...++.++.||++.+..+.. ...++ |..+-.++.|.+|||++|+ ++
T Consensus 56 kLEHLs~~HN~L-----------~~vhGELs~Lp~LRsv~~R~N~L-KnsGi-P~diF~l~dLt~lDLShNq------L~ 116 (1255)
T KOG0444|consen 56 KLEHLSMAHNQL-----------ISVHGELSDLPRLRSVIVRDNNL-KNSGI-PTDIFRLKDLTILDLSHNQ------LR 116 (1255)
T ss_pred hhhhhhhhhhhh-----------HhhhhhhccchhhHHHhhhcccc-ccCCC-Cchhcccccceeeecchhh------hh
Confidence 466777776666 55677788888888888877643 22333 4445678899999999998 88
Q ss_pred ccCcccCCCCCCCeEeccCCCccccccccccc-cCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCcc
Q 043351 143 EIPPNVGKLVHLRYLNLSDKFIETTGVFVNTI-IMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHIL 214 (218)
Q Consensus 143 ~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i-~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l 214 (218)
++|..+..-+++-.|+|++|.|+. +|.++ -+|. |-.||+++|. ++.+|+.+.+|..|+.|++++|+..
T Consensus 117 EvP~~LE~AKn~iVLNLS~N~Iet---IPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 117 EVPTNLEYAKNSIVLNLSYNNIET---IPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred hcchhhhhhcCcEEEEcccCcccc---CCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhh
Confidence 899888888889999999999988 88876 5677 8889998877 8889988888889999999988743
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.21 E-value=3.6e-11 Score=114.68 Aligned_cols=114 Identities=21% Similarity=0.254 Sum_probs=85.0
Q ss_pred hhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCC-ccc
Q 043351 88 LFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKF-IET 166 (218)
Q Consensus 88 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~-l~~ 166 (218)
+|..+ ..++|+.|.+.++ ....++..+..+++|+.|+|+++.. +..+|. ++.+++|++|++++|. +..
T Consensus 604 lP~~f-~~~~L~~L~L~~s----~l~~L~~~~~~l~~Lk~L~Ls~~~~-----l~~ip~-ls~l~~Le~L~L~~c~~L~~ 672 (1153)
T PLN03210 604 MPSNF-RPENLVKLQMQGS----KLEKLWDGVHSLTGLRNIDLRGSKN-----LKEIPD-LSMATNLETLKLSDCSSLVE 672 (1153)
T ss_pred CCCcC-CccCCcEEECcCc----cccccccccccCCCCCEEECCCCCC-----cCcCCc-cccCCcccEEEecCCCCccc
Confidence 44444 4567777777664 2344555567788888888888765 777774 7788888888888876 666
Q ss_pred cccccccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCcccc
Q 043351 167 TGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHILEE 216 (218)
Q Consensus 167 ~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~~ 216 (218)
+|.+++.+. |+.|++++|..++.+|..+ ++++|+.|++++|..++.
T Consensus 673 ---lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~ 719 (1153)
T PLN03210 673 ---LPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKS 719 (1153)
T ss_pred ---cchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccc
Confidence 888888888 8888888888888888766 688888888888876654
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.08 E-value=1.1e-12 Score=108.28 Aligned_cols=112 Identities=20% Similarity=0.183 Sum_probs=94.8
Q ss_pred hhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccC-CCCCCCeEeccCCCc
Q 043351 86 EELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVG-KLVHLRYLNLSDKFI 164 (218)
Q Consensus 86 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~-~L~~L~~L~l~~~~l 164 (218)
+.+|+.++.+.+|.-|++..+. ...+| .|+.+..|+.|.+..|+ ++.+|.+++ +|.++..||++.|++
T Consensus 196 ~tlP~~lg~l~~L~~LyL~~Nk----i~~lP-ef~gcs~L~Elh~g~N~------i~~lpae~~~~L~~l~vLDLRdNkl 264 (565)
T KOG0472|consen 196 ETLPPELGGLESLELLYLRRNK----IRFLP-EFPGCSLLKELHVGENQ------IEMLPAEHLKHLNSLLVLDLRDNKL 264 (565)
T ss_pred hcCChhhcchhhhHHHHhhhcc----cccCC-CCCccHHHHHHHhcccH------HHhhHHHHhcccccceeeecccccc
Confidence 6678888888888877777743 35556 47778888888888888 888888776 899999999999999
Q ss_pred cccccccccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCc
Q 043351 165 ETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 165 ~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
++ .|.+++.|. |+.||+++|. +..+|..+++| .|+.|.+.||++
T Consensus 265 ke---~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 265 KE---VPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred cc---CchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCch
Confidence 99 999999999 9999999777 99999999999 899999999984
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.03 E-value=4.3e-12 Score=110.09 Aligned_cols=119 Identities=23% Similarity=0.190 Sum_probs=54.7
Q ss_pred hhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcc-----------------cccccccCcccCC
Q 043351 88 LFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFES-----------------NNLIKEIPPNVGK 150 (218)
Q Consensus 88 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~-----------------~~~l~~lp~~i~~ 150 (218)
+|.++..+.+|+.++++.+ ....+|+.+.++++||.|+|++|...+ -|+++.+|+.+++
T Consensus 214 ~Ptsld~l~NL~dvDlS~N----~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcK 289 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSEN----NLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCK 289 (1255)
T ss_pred CCCchhhhhhhhhcccccc----CCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhh
Confidence 4445555555555555542 234445555555555555555544211 0224445555555
Q ss_pred CCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCC
Q 043351 151 LVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCH 212 (218)
Q Consensus 151 L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~ 212 (218)
|+.|+.|.+.+|++.. ..+|+.||+|. |+.+...+|. ++-+|++++++.+|+.|.++.|+
T Consensus 290 L~kL~kLy~n~NkL~F-eGiPSGIGKL~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 290 LTKLTKLYANNNKLTF-EGIPSGIGKLIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred hHHHHHHHhccCcccc-cCCccchhhhhhhHHHHhhccc-cccCchhhhhhHHHHHhcccccc
Confidence 5555555555444221 11455555555 5544444333 44444444444444444444443
No 12
>PLN03150 hypothetical protein; Provisional
Probab=99.03 E-value=5.4e-10 Score=100.34 Aligned_cols=106 Identities=17% Similarity=0.161 Sum_probs=86.5
Q ss_pred eeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccccccccccCc
Q 043351 98 CHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMP 177 (218)
Q Consensus 98 Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L 177 (218)
++.|.+.++. ..+.+|..+..+++|+.|+|++|.+ ...+|..++.+++|++|+|++|.+ .|.+|.+++++
T Consensus 420 v~~L~L~~n~---L~g~ip~~i~~L~~L~~L~Ls~N~l-----~g~iP~~~~~l~~L~~LdLs~N~l--sg~iP~~l~~L 489 (623)
T PLN03150 420 IDGLGLDNQG---LRGFIPNDISKLRHLQSINLSGNSI-----RGNIPPSLGSITSLEVLDLSYNSF--NGSIPESLGQL 489 (623)
T ss_pred EEEEECCCCC---ccccCCHHHhCCCCCCEEECCCCcc-----cCcCChHHhCCCCCCEEECCCCCC--CCCCchHHhcC
Confidence 6677777653 3556778899999999999999984 457888899999999999999998 66689999999
Q ss_pred e-ecEEeecCCCCCCCCchhhcCC-CCCcEEeccCCCc
Q 043351 178 C-LSSFQIESCPKLKMLPYYLLQT-TKLQELKIYLCHI 213 (218)
Q Consensus 178 ~-L~~L~l~~~~~l~~lP~~i~~L-~~L~~L~l~~~~~ 213 (218)
. |+.|++++|.....+|..++.+ .++..+++.+|..
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 9 9999999998667899888654 4677888887753
No 13
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=6.5e-10 Score=83.83 Aligned_cols=101 Identities=20% Similarity=0.161 Sum_probs=28.9
Q ss_pred CCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCccc-CCCCCCCeEeccCCCcccccccccc
Q 043351 95 EKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNV-GKLVHLRYLNLSDKFIETTGVFVNT 173 (218)
Q Consensus 95 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i-~~L~~L~~L~l~~~~l~~~~~lp~~ 173 (218)
+.+|+.|+++++.. ..++. +..++.|+.|++++|. +.++++.+ ..+++|+.|++++|.|...+.+ ..
T Consensus 41 l~~L~~L~Ls~N~I----~~l~~-l~~L~~L~~L~L~~N~------I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l-~~ 108 (175)
T PF14580_consen 41 LDKLEVLDLSNNQI----TKLEG-LPGLPRLKTLDLSNNR------ISSISEGLDKNLPNLQELYLSNNKISDLNEL-EP 108 (175)
T ss_dssp -TT--EEE-TTS------S--TT-----TT--EEE--SS---------S-CHHHHHH-TT--EEE-TTS---SCCCC-GG
T ss_pred hcCCCEEECCCCCC----ccccC-ccChhhhhhcccCCCC------CCccccchHHhCCcCCEEECcCCcCCChHHh-HH
Confidence 44555555555322 22221 3345555555555555 44444333 2345555555555555441111 22
Q ss_pred ccCce-ecEEeecCCCCCCCCch----hhcCCCCCcEEec
Q 043351 174 IIMPC-LSSFQIESCPKLKMLPY----YLLQTTKLQELKI 208 (218)
Q Consensus 174 i~~L~-L~~L~l~~~~~l~~lP~----~i~~L~~L~~L~l 208 (218)
+..++ |+.|++.+|+ +...+. .+..+++|+.||-
T Consensus 109 L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 109 LSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp GGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETT
T ss_pred HHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCC
Confidence 33444 5555555555 333332 2345555555544
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=6.5e-10 Score=83.83 Aligned_cols=108 Identities=19% Similarity=0.169 Sum_probs=42.3
Q ss_pred ccCCCCeeEEEeccccccchhhhHHHHHh-cCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccccc
Q 043351 92 SFDEKVCHSILTLSFISVNSRNLLQELFG-ELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVF 170 (218)
Q Consensus 92 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~l 170 (218)
+.+..+++.|.+.++.. ..+.. ++ .+.+|++|++++|. +..++ .+..+++|+.|++++|.|.. +
T Consensus 15 ~~n~~~~~~L~L~~n~I----~~Ie~-L~~~l~~L~~L~Ls~N~------I~~l~-~l~~L~~L~~L~L~~N~I~~---i 79 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQI----STIEN-LGATLDKLEVLDLSNNQ------ITKLE-GLPGLPRLKTLDLSNNRISS---I 79 (175)
T ss_dssp -------------------------S---TT-TT--EEE-TTS--------S--T-T----TT--EEE--SS---S----
T ss_pred ccccccccccccccccc----ccccc-hhhhhcCCCEEECCCCC------Ccccc-CccChhhhhhcccCCCCCCc---c
Confidence 34555789999998643 33322 44 57899999999999 88886 48899999999999999998 8
Q ss_pred cccc-cCce-ecEEeecCCCCCCCCc--hhhcCCCCCcEEeccCCCccc
Q 043351 171 VNTI-IMPC-LSSFQIESCPKLKMLP--YYLLQTTKLQELKIYLCHILE 215 (218)
Q Consensus 171 p~~i-~~L~-L~~L~l~~~~~l~~lP--~~i~~L~~L~~L~l~~~~~l~ 215 (218)
+..+ ..++ |+.|++++|+ +..+- ..+..+++|++|++.+|++.+
T Consensus 80 ~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred ccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccc
Confidence 7655 3588 9999999888 55543 356789999999999999754
No 15
>PLN03150 hypothetical protein; Provisional
Probab=98.88 E-value=3e-09 Score=95.53 Aligned_cols=99 Identities=25% Similarity=0.249 Sum_probs=85.1
Q ss_pred hhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCcc
Q 043351 86 EELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIE 165 (218)
Q Consensus 86 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~ 165 (218)
+.+|..+..+++|+.|.+.++. ..+.+|..+..+++|+.|+|++|.+ ...+|+.+++|++|++|+|++|.+
T Consensus 432 g~ip~~i~~L~~L~~L~Ls~N~---l~g~iP~~~~~l~~L~~LdLs~N~l-----sg~iP~~l~~L~~L~~L~Ls~N~l- 502 (623)
T PLN03150 432 GFIPNDISKLRHLQSINLSGNS---IRGNIPPSLGSITSLEVLDLSYNSF-----NGSIPESLGQLTSLRILNLNGNSL- 502 (623)
T ss_pred ccCCHHHhCCCCCCEEECCCCc---ccCcCChHHhCCCCCCEEECCCCCC-----CCCCchHHhcCCCCCEEECcCCcc-
Confidence 6678889999999999999863 4567888899999999999999995 557899999999999999999998
Q ss_pred ccccccccccCce--ecEEeecCCCCCCCCc
Q 043351 166 TTGVFVNTIIMPC--LSSFQIESCPKLKMLP 194 (218)
Q Consensus 166 ~~~~lp~~i~~L~--L~~L~l~~~~~l~~lP 194 (218)
.|.+|..++.+. +..+++.+|..+...|
T Consensus 503 -~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 503 -SGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred -cccCChHHhhccccCceEEecCCccccCCC
Confidence 677999987753 7889999887666554
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.84 E-value=2.2e-10 Score=103.02 Aligned_cols=83 Identities=27% Similarity=0.343 Sum_probs=64.9
Q ss_pred HhcCCCCcEEEecCCCCcccccccccCc-ccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCchh
Q 043351 119 FGELTCLRALCISNNSFESNNLIKEIPP-NVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYY 196 (218)
Q Consensus 119 ~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~ 196 (218)
+-.+++||+|+|++|. +..+|+ .+.++..|+.|+|+||+++. +|.++.++. |++|...+|. +..+| .
T Consensus 379 l~~~~hLKVLhLsyNr------L~~fpas~~~kle~LeeL~LSGNkL~~---Lp~tva~~~~L~tL~ahsN~-l~~fP-e 447 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNR------LNSFPASKLRKLEELEELNLSGNKLTT---LPDTVANLGRLHTLRAHSNQ-LLSFP-E 447 (1081)
T ss_pred hccccceeeeeecccc------cccCCHHHHhchHHhHHHhcccchhhh---hhHHHHhhhhhHHHhhcCCc-eeech-h
Confidence 5578888888888888 888885 45788888888888888888 888777777 7777777666 77777 6
Q ss_pred hcCCCCCcEEeccCCC
Q 043351 197 LLQTTKLQELKIYLCH 212 (218)
Q Consensus 197 i~~L~~L~~L~l~~~~ 212 (218)
+.++++|+.+|++.|.
T Consensus 448 ~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLSCNN 463 (1081)
T ss_pred hhhcCcceEEecccch
Confidence 7777777777777775
No 17
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.82 E-value=2.2e-10 Score=98.28 Aligned_cols=112 Identities=22% Similarity=0.249 Sum_probs=97.4
Q ss_pred hhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCcc
Q 043351 86 EELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIE 165 (218)
Q Consensus 86 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~ 165 (218)
...|..++.++ |+.|.+.++ ..+.+|..++.+..|..||.+.|. +..+|+.++.|..|+.|+++.|.+.
T Consensus 134 S~lp~~lC~lp-Lkvli~sNN----kl~~lp~~ig~~~tl~~ld~s~ne------i~slpsql~~l~slr~l~vrRn~l~ 202 (722)
T KOG0532|consen 134 SHLPDGLCDLP-LKVLIVSNN----KLTSLPEEIGLLPTLAHLDVSKNE------IQSLPSQLGYLTSLRDLNVRRNHLE 202 (722)
T ss_pred hcCChhhhcCc-ceeEEEecC----ccccCCcccccchhHHHhhhhhhh------hhhchHHhhhHHHHHHHHHhhhhhh
Confidence 45677777776 888888875 346777778888889999999999 8999999999999999999999999
Q ss_pred ccccccccccCceecEEeecCCCCCCCCchhhcCCCCCcEEeccCCC
Q 043351 166 TTGVFVNTIIMPCLSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCH 212 (218)
Q Consensus 166 ~~~~lp~~i~~L~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~ 212 (218)
. +|++++.|+|..||++.|+ +..+|-.|.+|+.|++|.+.+|+
T Consensus 203 ~---lp~El~~LpLi~lDfScNk-is~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 203 D---LPEELCSLPLIRLDFSCNK-ISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred h---CCHHHhCCceeeeecccCc-eeecchhhhhhhhheeeeeccCC
Confidence 9 9999998889999999554 99999999999999999999998
No 18
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.74 E-value=1.3e-08 Score=63.41 Aligned_cols=56 Identities=16% Similarity=0.193 Sum_probs=25.3
Q ss_pred CCCeEeccCCCccccccccc-cccCce-ecEEeecCCCCCCCCch-hhcCCCCCcEEeccCCC
Q 043351 153 HLRYLNLSDKFIETTGVFVN-TIIMPC-LSSFQIESCPKLKMLPY-YLLQTTKLQELKIYLCH 212 (218)
Q Consensus 153 ~L~~L~l~~~~l~~~~~lp~-~i~~L~-L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~ 212 (218)
+|++|++++|.+.. +|+ .+..++ |++|++++|. +..+|+ .+.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~---i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTE---IPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESE---ECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCc---cCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444444444 442 233444 4444444444 444432 33455555555555554
No 19
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.73 E-value=2.5e-09 Score=92.40 Aligned_cols=132 Identities=16% Similarity=0.093 Sum_probs=83.5
Q ss_pred CCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccccc
Q 043351 61 DEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNL 140 (218)
Q Consensus 61 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~ 140 (218)
..+..++.+..+....+ -...+.+++.|+.|+++++. +...-++.+...++|++|+|++|.
T Consensus 268 l~kme~l~L~~N~l~~v----------n~g~lfgLt~L~~L~lS~Na---I~rih~d~WsftqkL~~LdLs~N~------ 328 (873)
T KOG4194|consen 268 LEKMEHLNLETNRLQAV----------NEGWLFGLTSLEQLDLSYNA---IQRIHIDSWSFTQKLKELDLSSNR------ 328 (873)
T ss_pred ecccceeecccchhhhh----------hcccccccchhhhhccchhh---hheeecchhhhcccceeEeccccc------
Confidence 34555666665554321 22344566666666666642 233344445556666666666666
Q ss_pred ccccCc-------------------------ccCCCCCCCeEeccCCCccccccccc---cccCce-ecEEeecCCCCCC
Q 043351 141 IKEIPP-------------------------NVGKLVHLRYLNLSDKFIETTGVFVN---TIIMPC-LSSFQIESCPKLK 191 (218)
Q Consensus 141 l~~lp~-------------------------~i~~L~~L~~L~l~~~~l~~~~~lp~---~i~~L~-L~~L~l~~~~~l~ 191 (218)
+..+|+ .+..+.+|+.|||++|.+ ++.+.+ .+..|+ |+.|++.+|+ ++
T Consensus 329 i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l--s~~IEDaa~~f~gl~~LrkL~l~gNq-lk 405 (873)
T KOG4194|consen 329 ITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL--SWCIEDAAVAFNGLPSLRKLRLTGNQ-LK 405 (873)
T ss_pred cccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE--EEEEecchhhhccchhhhheeecCce-ee
Confidence 554442 234566777777777776 444433 244578 8999999888 88
Q ss_pred CCc-hhhcCCCCCcEEeccCCCcc
Q 043351 192 MLP-YYLLQTTKLQELKIYLCHIL 214 (218)
Q Consensus 192 ~lP-~~i~~L~~L~~L~l~~~~~l 214 (218)
.+| ..+.++..|++|++.+|.+-
T Consensus 406 ~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 406 SIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred ecchhhhccCcccceecCCCCcce
Confidence 888 46789999999999999863
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.71 E-value=2.5e-08 Score=90.91 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=51.7
Q ss_pred cCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccc
Q 043351 60 FDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNN 139 (218)
Q Consensus 60 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~ 139 (218)
++..++.|.+..+.. ..+|..+. ++|++|.+.++.. ..+|..+. ..|+.|++++|.
T Consensus 197 Ip~~L~~L~Ls~N~L-----------tsLP~~l~--~nL~~L~Ls~N~L----tsLP~~l~--~~L~~L~Ls~N~----- 252 (754)
T PRK15370 197 IPEQITTLILDNNEL-----------KSLPENLQ--GNIKTLYANSNQL----TSIPATLP--DTIQEMELSINR----- 252 (754)
T ss_pred cccCCcEEEecCCCC-----------CcCChhhc--cCCCEEECCCCcc----ccCChhhh--ccccEEECcCCc-----
Confidence 445566666666555 22333332 3566666665422 22333222 245566666655
Q ss_pred cccccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCch
Q 043351 140 LIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPY 195 (218)
Q Consensus 140 ~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~ 195 (218)
+..+|..+. .+|++|++++|.+.. +|..+. . |+.|++++|+ ++.+|.
T Consensus 253 -L~~LP~~l~--s~L~~L~Ls~N~L~~---LP~~l~--~sL~~L~Ls~N~-Lt~LP~ 300 (754)
T PRK15370 253 -ITELPERLP--SALQSLDLFHNKISC---LPENLP--EELRYLSVYDNS-IRTLPA 300 (754)
T ss_pred -cCcCChhHh--CCCCEEECcCCccCc---cccccC--CCCcEEECCCCc-cccCcc
Confidence 555555443 345555665555555 555432 3 5555555554 444443
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.70 E-value=2e-08 Score=82.63 Aligned_cols=116 Identities=15% Similarity=0.108 Sum_probs=54.2
Q ss_pred CCeeEEEeccccccc-hhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCcccc--ccccc
Q 043351 96 KVCHSILTLSFISVN-SRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETT--GVFVN 172 (218)
Q Consensus 96 ~~Lr~L~l~~~~~~~-~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~--~~lp~ 172 (218)
++|+.|.+.++.... ....++..+..++.|+.|++++|.... ..+..++..+..+++|++|++++|.+... +.++.
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 215 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD-AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE 215 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch-HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH
Confidence 556666665543210 112334445555566666666665200 00112333344455666666666655320 01334
Q ss_pred cccCce-ecEEeecCCCCCCC-Cchhhc-----CCCCCcEEeccCCCc
Q 043351 173 TIIMPC-LSSFQIESCPKLKM-LPYYLL-----QTTKLQELKIYLCHI 213 (218)
Q Consensus 173 ~i~~L~-L~~L~l~~~~~l~~-lP~~i~-----~L~~L~~L~l~~~~~ 213 (218)
.+..++ |+.|++++|+ +.. -+..+. ..++|++|++++|.+
T Consensus 216 ~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 216 TLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 445556 6666666665 332 111111 125666666666653
No 22
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.69 E-value=2.5e-08 Score=86.32 Aligned_cols=116 Identities=22% Similarity=0.246 Sum_probs=89.4
Q ss_pred hhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccC-cccCCCCCCCeEeccCCCc
Q 043351 86 EELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIP-PNVGKLVHLRYLNLSDKFI 164 (218)
Q Consensus 86 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~~L~l~~~~l 164 (218)
..+|.......+++.|.+..+. +...-.+.+.-++.||+|||+.|. +.++| +++..=.++++|+|++|.|
T Consensus 115 t~IP~f~~~sghl~~L~L~~N~---I~sv~se~L~~l~alrslDLSrN~------is~i~~~sfp~~~ni~~L~La~N~I 185 (873)
T KOG4194|consen 115 TRIPRFGHESGHLEKLDLRHNL---ISSVTSEELSALPALRSLDLSRNL------ISEIPKPSFPAKVNIKKLNLASNRI 185 (873)
T ss_pred hhcccccccccceeEEeeeccc---cccccHHHHHhHhhhhhhhhhhch------hhcccCCCCCCCCCceEEeeccccc
Confidence 4456555566667777777753 344455667788899999999998 88887 3456667899999999998
Q ss_pred ccccccc-ccccCce-ecEEeecCCCCCCCCchh-hcCCCCCcEEeccCCCcc
Q 043351 165 ETTGVFV-NTIIMPC-LSSFQIESCPKLKMLPYY-LLQTTKLQELKIYLCHIL 214 (218)
Q Consensus 165 ~~~~~lp-~~i~~L~-L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~l 214 (218)
+. +- ..+..+. |.+|.|+.|. ++.+|.. +.+|++|+.|++..|.+-
T Consensus 186 t~---l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 186 TT---LETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred cc---cccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhcccccee
Confidence 87 64 4567788 9999999888 8889864 466999999999999854
No 23
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.66 E-value=4e-08 Score=61.12 Aligned_cols=57 Identities=26% Similarity=0.376 Sum_probs=49.0
Q ss_pred CCCcEEEecCCCCcccccccccCc-ccCCCCCCCeEeccCCCccccccccc-cccCce-ecEEeecCCC
Q 043351 123 TCLRALCISNNSFESNNLIKEIPP-NVGKLVHLRYLNLSDKFIETTGVFVN-TIIMPC-LSSFQIESCP 188 (218)
Q Consensus 123 ~~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~~~~lp~-~i~~L~-L~~L~l~~~~ 188 (218)
++|++|++++|. +..+|+ .+..+++|++|++++|.+.. +|+ .+..++ |+.|++++|+
T Consensus 1 p~L~~L~l~~n~------l~~i~~~~f~~l~~L~~L~l~~N~l~~---i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK------LTEIPPDSFSNLPNLETLDLSNNNLTS---IPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST------ESEECTTTTTTGTTESEEEETSSSESE---EETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC------CCccCHHHHcCCCCCCEeEccCCccCc---cCHHHHcCCCCCCEEeCcCCc
Confidence 478999999998 888884 67889999999999999987 765 668899 9999999886
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.60 E-value=7.2e-09 Score=93.47 Aligned_cols=112 Identities=18% Similarity=0.140 Sum_probs=92.5
Q ss_pred hhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccc
Q 043351 87 ELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIET 166 (218)
Q Consensus 87 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~ 166 (218)
...+.+..+++||.|.+.++.. .......+.++..|+.|+|++|. ++.+|..+..+..|++|...+|.+..
T Consensus 374 ~c~p~l~~~~hLKVLhLsyNrL---~~fpas~~~kle~LeeL~LSGNk------L~~Lp~tva~~~~L~tL~ahsN~l~~ 444 (1081)
T KOG0618|consen 374 SCFPVLVNFKHLKVLHLSYNRL---NSFPASKLRKLEELEELNLSGNK------LTTLPDTVANLGRLHTLRAHSNQLLS 444 (1081)
T ss_pred cchhhhccccceeeeeeccccc---ccCCHHHHhchHHhHHHhcccch------hhhhhHHHHhhhhhHHHhhcCCceee
Confidence 3456678899999999999632 23344557889999999999999 99999999999999999999999988
Q ss_pred cccccccccCce-ecEEeecCCCCCCC--CchhhcCCCCCcEEeccCCCc
Q 043351 167 TGVFVNTIIMPC-LSSFQIESCPKLKM--LPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 167 ~~~lp~~i~~L~-L~~L~l~~~~~l~~--lP~~i~~L~~L~~L~l~~~~~ 213 (218)
+| ++.+++ |+++|++.|+ +.. +|..... ++|++||+++|..
T Consensus 445 ---fP-e~~~l~qL~~lDlS~N~-L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 445 ---FP-ELAQLPQLKVLDLSCNN-LSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred ---ch-hhhhcCcceEEecccch-hhhhhhhhhCCC-cccceeeccCCcc
Confidence 99 789999 9999999666 553 4544332 7999999999984
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.58 E-value=7.1e-09 Score=83.28 Aligned_cols=83 Identities=23% Similarity=0.203 Sum_probs=50.1
Q ss_pred hcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCc--hh
Q 043351 120 GELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLP--YY 196 (218)
Q Consensus 120 ~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP--~~ 196 (218)
..+.+|..|||++|. +.++-.+-.+|.+.+.|.|++|.++. + +.+++|+ |..||+++|+ ++.+- .+
T Consensus 326 a~L~~L~~LDLS~N~------Ls~~~Gwh~KLGNIKtL~La~N~iE~---L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~ 394 (490)
T KOG1259|consen 326 AELPQLQLLDLSGNL------LAECVGWHLKLGNIKTLKLAQNKIET---L-SGLRKLYSLVNLDLSSNQ-IEELDEVNH 394 (490)
T ss_pred hhcccceEeecccch------hHhhhhhHhhhcCEeeeehhhhhHhh---h-hhhHhhhhheeccccccc-hhhHHHhcc
Confidence 334444444444444 33333323334444444444444444 3 3467888 8899998887 66553 36
Q ss_pred hcCCCCCcEEeccCCCc
Q 043351 197 LLQTTKLQELKIYLCHI 213 (218)
Q Consensus 197 i~~L~~L~~L~l~~~~~ 213 (218)
|++|+.|+++.+.+|++
T Consensus 395 IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 395 IGNLPCLETLRLTGNPL 411 (490)
T ss_pred cccccHHHHHhhcCCCc
Confidence 88999999999998874
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.57 E-value=1.5e-07 Score=85.91 Aligned_cols=117 Identities=16% Similarity=0.169 Sum_probs=89.5
Q ss_pred CceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccc
Q 043351 62 EKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLI 141 (218)
Q Consensus 62 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l 141 (218)
.+...+.+..... ..+|..+. +.++.|.+.++.. ..+|..+. ++|+.|++++|. +
T Consensus 178 ~~~~~L~L~~~~L-----------tsLP~~Ip--~~L~~L~Ls~N~L----tsLP~~l~--~nL~~L~Ls~N~------L 232 (754)
T PRK15370 178 NNKTELRLKILGL-----------TTIPACIP--EQITTLILDNNEL----KSLPENLQ--GNIKTLYANSNQ------L 232 (754)
T ss_pred cCceEEEeCCCCc-----------CcCCcccc--cCCcEEEecCCCC----CcCChhhc--cCCCEEECCCCc------c
Confidence 4456677766555 34555443 5789999988643 34555443 589999999999 8
Q ss_pred cccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCc
Q 043351 142 KEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 142 ~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
..+|..+. .+|+.|++++|.+.. +|..+. . |+.|++++|+ +..+|..+. ++|+.|++++|.+
T Consensus 233 tsLP~~l~--~~L~~L~Ls~N~L~~---LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~L 295 (754)
T PRK15370 233 TSIPATLP--DTIQEMELSINRITE---LPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSI 295 (754)
T ss_pred ccCChhhh--ccccEEECcCCccCc---CChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCcc
Confidence 88987664 479999999999988 998764 6 9999999776 889998764 5899999999963
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.55 E-value=8.2e-08 Score=87.46 Aligned_cols=75 Identities=20% Similarity=0.261 Sum_probs=60.6
Q ss_pred CCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCchhhcCCC
Q 043351 123 TCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTT 201 (218)
Q Consensus 123 ~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~ 201 (218)
.+|+.|++++|. +..+|... .+|+.|++++|.+.. +|.. .. |+.|++++|+ ++.+|..+++++
T Consensus 382 ~~L~~LdLs~N~------Lt~LP~l~---s~L~~LdLS~N~Lss---IP~l---~~~L~~L~Ls~Nq-Lt~LP~sl~~L~ 445 (788)
T PRK15387 382 SGLKELIVSGNR------LTSLPVLP---SELKELMVSGNRLTS---LPML---PSGLLSLSVYRNQ-LTRLPESLIHLS 445 (788)
T ss_pred cccceEEecCCc------ccCCCCcc---cCCCEEEccCCcCCC---CCcc---hhhhhhhhhccCc-ccccChHHhhcc
Confidence 357777787777 66776532 578888899888887 8863 35 8889999888 889999999999
Q ss_pred CCcEEeccCCCc
Q 043351 202 KLQELKIYLCHI 213 (218)
Q Consensus 202 ~L~~L~l~~~~~ 213 (218)
+|+.|++++|++
T Consensus 446 ~L~~LdLs~N~L 457 (788)
T PRK15387 446 SETTVNLEGNPL 457 (788)
T ss_pred CCCeEECCCCCC
Confidence 999999999985
No 28
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.51 E-value=1.5e-07 Score=54.44 Aligned_cols=38 Identities=39% Similarity=0.600 Sum_probs=27.0
Q ss_pred CCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccc
Q 043351 123 TCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIET 166 (218)
Q Consensus 123 ~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~ 166 (218)
++|++|++++|+ +.++|+.+++|++|++|++++|+++.
T Consensus 1 ~~L~~L~l~~N~------i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQ------ITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-------SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCC------CcccCchHhCCCCCCEEEecCCCCCC
Confidence 357777777777 77777767777777777777777766
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.50 E-value=2.4e-08 Score=80.29 Aligned_cols=106 Identities=17% Similarity=0.163 Sum_probs=88.5
Q ss_pred ccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCcccccccc
Q 043351 92 SFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFV 171 (218)
Q Consensus 92 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp 171 (218)
+...+.|.+++++.+ .+..+.++.+-.+.+|+|+++.|+ +..+-. +..|.+|+.|||++|.+.+ +.
T Consensus 280 ~dTWq~LtelDLS~N----~I~~iDESvKL~Pkir~L~lS~N~------i~~v~n-La~L~~L~~LDLS~N~Ls~---~~ 345 (490)
T KOG1259|consen 280 ADTWQELTELDLSGN----LITQIDESVKLAPKLRRLILSQNR------IRTVQN-LAELPQLQLLDLSGNLLAE---CV 345 (490)
T ss_pred cchHhhhhhcccccc----chhhhhhhhhhccceeEEeccccc------eeeehh-hhhcccceEeecccchhHh---hh
Confidence 445677888888884 567777778889999999999999 777654 8889999999999999887 76
Q ss_pred ccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCc
Q 043351 172 NTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 172 ~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
-+-.+|- .++|.+++|. ++.+. ++++|-+|..||+++|+|
T Consensus 346 Gwh~KLGNIKtL~La~N~-iE~LS-GL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 346 GWHLKLGNIKTLKLAQNK-IETLS-GLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred hhHhhhcCEeeeehhhhh-Hhhhh-hhHhhhhheeccccccch
Confidence 6666777 8999999887 77775 889999999999999985
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.50 E-value=9.3e-08 Score=88.54 Aligned_cols=110 Identities=22% Similarity=0.152 Sum_probs=85.1
Q ss_pred cCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCc-ccCCCCCCCeEeccCCC-ccccccc
Q 043351 93 FDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPP-NVGKLVHLRYLNLSDKF-IETTGVF 170 (218)
Q Consensus 93 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L~~L~~L~l~~~~-l~~~~~l 170 (218)
......|...+.++.. ...+.. ...+.|+.|-+.++.. ++..++. .+..++.|++|||++|. +.+ +
T Consensus 520 ~~~~~~rr~s~~~~~~----~~~~~~-~~~~~L~tLll~~n~~----~l~~is~~ff~~m~~LrVLDLs~~~~l~~---L 587 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKI----EHIAGS-SENPKLRTLLLQRNSD----WLLEISGEFFRSLPLLRVLDLSGNSSLSK---L 587 (889)
T ss_pred cchhheeEEEEeccch----hhccCC-CCCCccceEEEeecch----hhhhcCHHHHhhCcceEEEECCCCCccCc---C
Confidence 3446677777766432 222222 2455799998888851 0445553 37889999999999887 778 9
Q ss_pred cccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCccc
Q 043351 171 VNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHILE 215 (218)
Q Consensus 171 p~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~ 215 (218)
|.+|++|- |++|+++++. +..+|.++++|++|.+|++..+..++
T Consensus 588 P~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~ 632 (889)
T KOG4658|consen 588 PSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLE 632 (889)
T ss_pred ChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccc
Confidence 99999999 9999999988 99999999999999999999887654
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.47 E-value=1.2e-07 Score=78.00 Aligned_cols=141 Identities=15% Similarity=0.122 Sum_probs=84.0
Q ss_pred CCceeEEEEeeeccchhhhhhhhhhhhhhccccCC---CCeeEEEecccccc-chhhhHHHHHhcC-CCCcEEEecCCCC
Q 043351 61 DEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDE---KVCHSILTLSFISV-NSRNLLQELFGEL-TCLRALCISNNSF 135 (218)
Q Consensus 61 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~Lr~L~l~~~~~~-~~~~~~~~~~~~l-~~Lr~L~L~~~~~ 135 (218)
..+++++.+..+.... ..+..+..+ ++|+.|.+.++... .....+...+..+ ++|+.|++++|.+
T Consensus 80 ~~~L~~L~l~~~~~~~----------~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 149 (319)
T cd00116 80 GCGLQELDLSDNALGP----------DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRL 149 (319)
T ss_pred cCceeEEEccCCCCCh----------hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcC
Confidence 4567777776655531 112222222 45788877765431 1122344455666 7888888888872
Q ss_pred cccccccccCcccCCCCCCCeEeccCCCcccc--ccccccccCce-ecEEeecCCCCCC-----CCchhhcCCCCCcEEe
Q 043351 136 ESNNLIKEIPPNVGKLVHLRYLNLSDKFIETT--GVFVNTIIMPC-LSSFQIESCPKLK-----MLPYYLLQTTKLQELK 207 (218)
Q Consensus 136 ~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~--~~lp~~i~~L~-L~~L~l~~~~~l~-----~lP~~i~~L~~L~~L~ 207 (218)
.. .....++..+..+.+|++|++++|.+... ..++..+..++ |+.|++++|. +. .++..+.++++|++|+
T Consensus 150 ~~-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ 227 (319)
T cd00116 150 EG-ASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLN 227 (319)
T ss_pred Cc-hHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEe
Confidence 00 00113445566777888888888877520 01455566667 8888888886 43 3444566778899999
Q ss_pred ccCCCc
Q 043351 208 IYLCHI 213 (218)
Q Consensus 208 l~~~~~ 213 (218)
+++|.+
T Consensus 228 ls~n~l 233 (319)
T cd00116 228 LGDNNL 233 (319)
T ss_pred cCCCcC
Confidence 988864
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.41 E-value=2e-08 Score=86.51 Aligned_cols=113 Identities=20% Similarity=0.205 Sum_probs=93.0
Q ss_pred hhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCcc
Q 043351 86 EELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIE 165 (218)
Q Consensus 86 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~ 165 (218)
..+|..+..+..|..++++.+ ....+|..+..| -|++|-+++|+ ++.+|..|+.+.+|..|+.+.|.+.
T Consensus 111 r~ip~~i~~L~~lt~l~ls~N----qlS~lp~~lC~l-pLkvli~sNNk------l~~lp~~ig~~~tl~~ld~s~nei~ 179 (722)
T KOG0532|consen 111 RTIPEAICNLEALTFLDLSSN----QLSHLPDGLCDL-PLKVLIVSNNK------LTSLPEEIGLLPTLAHLDVSKNEIQ 179 (722)
T ss_pred eecchhhhhhhHHHHhhhccc----hhhcCChhhhcC-cceeEEEecCc------cccCCcccccchhHHHhhhhhhhhh
Confidence 346777788888888888774 345666666655 48888899988 8999999998889999999999998
Q ss_pred ccccccccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCcc
Q 043351 166 TTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHIL 214 (218)
Q Consensus 166 ~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l 214 (218)
. +|+.++.+. |+.|.++.|. +..+|+++..| .|..||++.|.+.
T Consensus 180 s---lpsql~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 180 S---LPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSCNKIS 224 (722)
T ss_pred h---chHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeecccCcee
Confidence 8 999999999 9999999888 88899988865 5899999999753
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.40 E-value=1.3e-07 Score=80.49 Aligned_cols=78 Identities=22% Similarity=0.298 Sum_probs=37.1
Q ss_pred CCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCchhhcCCCC
Q 043351 124 CLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTK 202 (218)
Q Consensus 124 ~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~ 202 (218)
+|+.|+++.|. +..+|..++.+++|+.|++++|++.. +|...+.+. |+.|++++|. +..+|..+..+..
T Consensus 141 nL~~L~l~~N~------i~~l~~~~~~l~~L~~L~l~~N~l~~---l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~ 210 (394)
T COG4886 141 NLKELDLSDNK------IESLPSPLRNLPNLKNLDLSFNDLSD---LPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSA 210 (394)
T ss_pred hcccccccccc------hhhhhhhhhccccccccccCCchhhh---hhhhhhhhhhhhheeccCCc-cccCchhhhhhhh
Confidence 44555555544 44444444445555555555554444 444444444 4444444444 4444444333344
Q ss_pred CcEEeccCC
Q 043351 203 LQELKIYLC 211 (218)
Q Consensus 203 L~~L~l~~~ 211 (218)
|+.|.+++|
T Consensus 211 L~~l~~~~N 219 (394)
T COG4886 211 LEELDLSNN 219 (394)
T ss_pred hhhhhhcCC
Confidence 444444444
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.40 E-value=1.3e-07 Score=80.42 Aligned_cols=42 Identities=29% Similarity=0.432 Sum_probs=18.7
Q ss_pred HhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccc
Q 043351 119 FGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIET 166 (218)
Q Consensus 119 ~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~ 166 (218)
+..++.|+.|+++.|. +.++|...+.++.|+.|++++|.+..
T Consensus 159 ~~~l~~L~~L~l~~N~------l~~l~~~~~~~~~L~~L~ls~N~i~~ 200 (394)
T COG4886 159 LRNLPNLKNLDLSFND------LSDLPKLLSNLSNLNNLDLSGNKISD 200 (394)
T ss_pred hhccccccccccCCch------hhhhhhhhhhhhhhhheeccCCcccc
Confidence 4444444444444444 44444433344444444444444444
No 35
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.29 E-value=7.4e-07 Score=51.50 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=29.0
Q ss_pred CCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCc
Q 043351 152 VHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLP 194 (218)
Q Consensus 152 ~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP 194 (218)
++|++|++++|.|+. +|+.+++++ |++|++++|+ ++.+|
T Consensus 1 ~~L~~L~l~~N~i~~---l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITD---LPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SS---HGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCCCcc---cCchHhCCCCCCEEEecCCC-CCCCc
Confidence 467888888888887 887788888 8888888877 66665
No 36
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.28 E-value=2.5e-06 Score=77.93 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=18.4
Q ss_pred CCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccc
Q 043351 124 CLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIET 166 (218)
Q Consensus 124 ~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~ 166 (218)
.|+.|++++|. +..+|.. +++|++|++++|.+..
T Consensus 283 ~L~~L~Ls~N~------Lt~LP~~---p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 283 GLCKLWIFGNQ------LTSLPVL---PPGLQELSVSDNQLAS 316 (788)
T ss_pred hcCEEECcCCc------ccccccc---ccccceeECCCCcccc
Confidence 34445555554 4555431 2456666666666655
No 37
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.10 E-value=4.3e-07 Score=65.15 Aligned_cols=93 Identities=15% Similarity=0.061 Sum_probs=62.0
Q ss_pred ccccCCCCeeEEEeccccccchhhhHHHHH-hcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccc
Q 043351 90 ISSFDEKVCHSILTLSFISVNSRNLLQELF-GELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTG 168 (218)
Q Consensus 90 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~-~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~ 168 (218)
..+.+...|....++++. .+.+|..| .+++.++.|++.+|. +.++|.++..++.||.|+++.|++..
T Consensus 47 y~l~~~~el~~i~ls~N~----fk~fp~kft~kf~t~t~lNl~~ne------isdvPeE~Aam~aLr~lNl~~N~l~~-- 114 (177)
T KOG4579|consen 47 YMLSKGYELTKISLSDNG----FKKFPKKFTIKFPTATTLNLANNE------ISDVPEELAAMPALRSLNLRFNPLNA-- 114 (177)
T ss_pred HHHhCCceEEEEecccch----hhhCCHHHhhccchhhhhhcchhh------hhhchHHHhhhHHhhhcccccCcccc--
Confidence 344556667677777642 33334334 345567777777777 77777777777777777777777776
Q ss_pred cccccccCce-ecEEeecCCCCCCCCchh
Q 043351 169 VFVNTIIMPC-LSSFQIESCPKLKMLPYY 196 (218)
Q Consensus 169 ~lp~~i~~L~-L~~L~l~~~~~l~~lP~~ 196 (218)
.|.-+..|. |-.|+..++. ..++|-.
T Consensus 115 -~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 115 -EPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred -chHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 777777777 7777777666 6666654
No 38
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.07 E-value=3.6e-06 Score=76.37 Aligned_cols=132 Identities=17% Similarity=0.103 Sum_probs=93.2
Q ss_pred CceeEEEEeeeccchhhhhhhhhhhhhhcccc-CCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccccc
Q 043351 62 EKIKRLHISCKMYDTVHEFSQHLSEELFISSF-DEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNL 140 (218)
Q Consensus 62 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~ 140 (218)
.+.+++.+.+...- +...|..++ .+|.|++|.+.+-.. ....+.....++++|+.||+++++
T Consensus 122 ~nL~~LdI~G~~~~---------s~~W~~kig~~LPsL~sL~i~~~~~--~~~dF~~lc~sFpNL~sLDIS~Tn------ 184 (699)
T KOG3665|consen 122 QNLQHLDISGSELF---------SNGWPKKIGTMLPSLRSLVISGRQF--DNDDFSQLCASFPNLRSLDISGTN------ 184 (699)
T ss_pred HhhhhcCccccchh---------hccHHHHHhhhCcccceEEecCcee--cchhHHHHhhccCccceeecCCCC------
Confidence 45777777654331 122333333 478999999988533 223355667899999999999999
Q ss_pred ccccCcccCCCCCCCeEeccCCCcccccccc--ccccCce-ecEEeecCCCCCCCCch-------hhcCCCCCcEEeccC
Q 043351 141 IKEIPPNVGKLVHLRYLNLSDKFIETTGVFV--NTIIMPC-LSSFQIESCPKLKMLPY-------YLLQTTKLQELKIYL 210 (218)
Q Consensus 141 l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp--~~i~~L~-L~~L~l~~~~~l~~lP~-------~i~~L~~L~~L~l~~ 210 (218)
+..+ ..|+.|++|+.|.+.+-.++. -+ ..+.+|+ |++||+|...... .|. .-..|+.||.||+++
T Consensus 185 I~nl-~GIS~LknLq~L~mrnLe~e~---~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 185 ISNL-SGISRLKNLQVLSMRNLEFES---YQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred ccCc-HHHhccccHHHHhccCCCCCc---hhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCC
Confidence 8887 679999999999998877654 22 3578899 9999999765322 221 113588999999999
Q ss_pred CCccc
Q 043351 211 CHILE 215 (218)
Q Consensus 211 ~~~l~ 215 (218)
+.+-+
T Consensus 260 Tdi~~ 264 (699)
T KOG3665|consen 260 TDINE 264 (699)
T ss_pred cchhH
Confidence 87543
No 39
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.95 E-value=4.6e-07 Score=75.26 Aligned_cols=131 Identities=13% Similarity=0.095 Sum_probs=71.6
Q ss_pred ccCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecC-CCCcc
Q 043351 59 SFDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISN-NSFES 137 (218)
Q Consensus 59 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~~~~ 137 (218)
+.|.....|.+..+.+. ...+.+|+.+++||.|+++.+ ++..+-|+.|..++.|..|-+.+ |.
T Consensus 64 ~LP~~tveirLdqN~I~----------~iP~~aF~~l~~LRrLdLS~N---~Is~I~p~AF~GL~~l~~Lvlyg~Nk--- 127 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQIS----------SIPPGAFKTLHRLRRLDLSKN---NISFIAPDAFKGLASLLSLVLYGNNK--- 127 (498)
T ss_pred cCCCcceEEEeccCCcc----------cCChhhccchhhhceeccccc---chhhcChHhhhhhHhhhHHHhhcCCc---
Confidence 44555555555555553 223445566666666666654 33445566666666655554444 33
Q ss_pred cccccccCc-ccCCCCCCCeEeccCCCcccccccc-ccccCce-ecEEeecCCCCCCCCch-hhcCCCCCcEEeccCCC
Q 043351 138 NNLIKEIPP-NVGKLVHLRYLNLSDKFIETTGVFV-NTIIMPC-LSSFQIESCPKLKMLPY-YLLQTTKLQELKIYLCH 212 (218)
Q Consensus 138 ~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~~~~lp-~~i~~L~-L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~ 212 (218)
|+.+|+ .+++|..|+.|.+.-|++.. ++ ..+..|+ |..|.+-+|. +..++. .+..+..++++.+..|+
T Consensus 128 ---I~~l~k~~F~gL~slqrLllNan~i~C---ir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 128 ---ITDLPKGAFGGLSSLQRLLLNANHINC---IRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred ---hhhhhhhHhhhHHHHHHHhcChhhhcc---hhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 666653 34556666666665555544 33 3344555 5555555555 555554 45566666666666655
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=7e-06 Score=69.08 Aligned_cols=111 Identities=20% Similarity=0.158 Sum_probs=67.5
Q ss_pred CCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCcccccccc--c
Q 043351 95 EKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFV--N 172 (218)
Q Consensus 95 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp--~ 172 (218)
+++|+.|.+..++. ...........+++|.+|+|.+|.. +..--.+-.-++.|+.|+|++|.+.. ++ .
T Consensus 196 l~~lK~L~l~~CGl--s~k~V~~~~~~fPsl~~L~L~~N~~-----~~~~~~~~~i~~~L~~LdLs~N~li~---~~~~~ 265 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGL--SWKDVQWILLTFPSLEVLYLEANEI-----ILIKATSTKILQTLQELDLSNNNLID---FDQGY 265 (505)
T ss_pred hhhhheEEeccCCC--CHHHHHHHHHhCCcHHHhhhhcccc-----cceecchhhhhhHHhhccccCCcccc---ccccc
Confidence 44555555555543 2444455556677777777777731 22212223445678888888888666 55 4
Q ss_pred cccCce-ecEEeecCCCCCCC--Cchh-----hcCCCCCcEEeccCCCccccc
Q 043351 173 TIIMPC-LSSFQIESCPKLKM--LPYY-----LLQTTKLQELKIYLCHILEEW 217 (218)
Q Consensus 173 ~i~~L~-L~~L~l~~~~~l~~--lP~~-----i~~L~~L~~L~l~~~~~l~~~ 217 (218)
-++.|+ |..|.++.|. +.+ .|+. -..+++|+.|++..|++ .+|
T Consensus 266 ~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I-~~w 316 (505)
T KOG3207|consen 266 KVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNI-RDW 316 (505)
T ss_pred ccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCcc-ccc
Confidence 567777 8888887776 443 2332 24667888888888875 334
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.89 E-value=8.8e-07 Score=78.75 Aligned_cols=92 Identities=22% Similarity=0.314 Sum_probs=69.4
Q ss_pred chhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCC
Q 043351 110 NSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCP 188 (218)
Q Consensus 110 ~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~ 188 (218)
+....+...+.-++.|+.|+|++|+ +.++- .+..|++|++|||+.|.+.. +|.--..-. |+.|.+++|.
T Consensus 174 N~L~~mD~SLqll~ale~LnLshNk------~~~v~-~Lr~l~~LkhLDlsyN~L~~---vp~l~~~gc~L~~L~lrnN~ 243 (1096)
T KOG1859|consen 174 NRLVLMDESLQLLPALESLNLSHNK------FTKVD-NLRRLPKLKHLDLSYNCLRH---VPQLSMVGCKLQLLNLRNNA 243 (1096)
T ss_pred hhHHhHHHHHHHHHHhhhhccchhh------hhhhH-HHHhcccccccccccchhcc---ccccchhhhhheeeeecccH
Confidence 3455666777778888899999998 66554 67888889999999888887 776222223 8888888777
Q ss_pred CCCCCchhhcCCCCCcEEeccCCCc
Q 043351 189 KLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 189 ~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
++.+- +|.+|.+|+.||++.|-+
T Consensus 244 -l~tL~-gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 244 -LTTLR-GIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred -HHhhh-hHHhhhhhhccchhHhhh
Confidence 77775 788888888888888753
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.88 E-value=4.5e-06 Score=71.75 Aligned_cols=109 Identities=19% Similarity=0.144 Sum_probs=82.4
Q ss_pred ccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCcccccc
Q 043351 90 ISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGV 169 (218)
Q Consensus 90 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~ 169 (218)
..+..++++..+.+..+. ...+...+..+++|++|++++|. |..+.. +..+..|+.|++++|.|..
T Consensus 89 ~~l~~~~~l~~l~l~~n~----i~~i~~~l~~~~~L~~L~ls~N~------I~~i~~-l~~l~~L~~L~l~~N~i~~--- 154 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNK----IEKIENLLSSLVNLQVLDLSFNK------ITKLEG-LSTLTLLKELNLSGNLISD--- 154 (414)
T ss_pred cccccccceeeeeccccc----hhhcccchhhhhcchheeccccc------cccccc-hhhccchhhheeccCcchh---
Confidence 346778888888888753 33333336678899999999998 877754 7888889999999999887
Q ss_pred ccccccCce-ecEEeecCCCCCCCCchh-hcCCCCCcEEeccCCCcc
Q 043351 170 FVNTIIMPC-LSSFQIESCPKLKMLPYY-LLQTTKLQELKIYLCHIL 214 (218)
Q Consensus 170 lp~~i~~L~-L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~l 214 (218)
++. +..+. |+.+++++|. +..++.. ...+.+|+.+++.+|.+.
T Consensus 155 ~~~-~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 155 ISG-LESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred ccC-CccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCchh
Confidence 543 44577 9999999888 7766643 567888999999888753
No 43
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.85 E-value=3.9e-05 Score=65.16 Aligned_cols=114 Identities=19% Similarity=0.173 Sum_probs=69.5
Q ss_pred CceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccc
Q 043351 62 EKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLI 141 (218)
Q Consensus 62 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l 141 (218)
...++|.+..+.. ..+| . -..+|++|.+.++.. ...+|+.+. ++|+.|++++|.. +
T Consensus 52 ~~l~~L~Is~c~L-----------~sLP-~--LP~sLtsL~Lsnc~n---LtsLP~~LP--~nLe~L~Ls~Cs~-----L 107 (426)
T PRK15386 52 RASGRLYIKDCDI-----------ESLP-V--LPNELTEITIENCNN---LTTLPGSIP--EGLEKLTVCHCPE-----I 107 (426)
T ss_pred cCCCEEEeCCCCC-----------cccC-C--CCCCCcEEEccCCCC---cccCCchhh--hhhhheEccCccc-----c
Confidence 4577888887755 3344 1 224588888876432 344454442 4788888888854 7
Q ss_pred cccCcccCCCCCCCeEeccCCC---ccccccccccccCc------------------e-ecEEeecCCCCCCCCchhhcC
Q 043351 142 KEIPPNVGKLVHLRYLNLSDKF---IETTGVFVNTIIMP------------------C-LSSFQIESCPKLKMLPYYLLQ 199 (218)
Q Consensus 142 ~~lp~~i~~L~~L~~L~l~~~~---l~~~~~lp~~i~~L------------------~-L~~L~l~~~~~l~~lP~~i~~ 199 (218)
..+|+. |+.|+++++. +.. +|+++..| . |++|++++|. ...+|..+.
T Consensus 108 ~sLP~s------Le~L~L~~n~~~~L~~---LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~-~i~LP~~LP- 176 (426)
T PRK15386 108 SGLPES------VRSLEIKGSATDSIKN---VPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCS-NIILPEKLP- 176 (426)
T ss_pred cccccc------cceEEeCCCCCccccc---CcchHhheeccccccccccccccccCCcccEEEecCCC-cccCccccc-
Confidence 777764 4444454433 344 66554332 3 7888888888 444665543
Q ss_pred CCCCcEEeccCC
Q 043351 200 TTKLQELKIYLC 211 (218)
Q Consensus 200 L~~L~~L~l~~~ 211 (218)
.+|+.|+++.+
T Consensus 177 -~SLk~L~ls~n 187 (426)
T PRK15386 177 -ESLQSITLHIE 187 (426)
T ss_pred -ccCcEEEeccc
Confidence 47888887765
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=5.9e-06 Score=69.51 Aligned_cols=134 Identities=18% Similarity=0.076 Sum_probs=94.9
Q ss_pred cCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccc
Q 043351 60 FDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNN 139 (218)
Q Consensus 60 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~ 139 (218)
..+.+..|.+..+.... ..+-.....+++|..|.+.++.. ......+ ..-+..|+.|||++|.
T Consensus 195 ~l~~lK~L~l~~CGls~---------k~V~~~~~~fPsl~~L~L~~N~~-~~~~~~~--~~i~~~L~~LdLs~N~----- 257 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSW---------KDVQWILLTFPSLEVLYLEANEI-ILIKATS--TKILQTLQELDLSNNN----- 257 (505)
T ss_pred hhhhhheEEeccCCCCH---------HHHHHHHHhCCcHHHhhhhcccc-cceecch--hhhhhHHhhccccCCc-----
Confidence 45567778888777642 23344456788999999998742 2223333 3456789999999999
Q ss_pred cccccC--cccCCCCCCCeEeccCCCcccccccccc-----ccCce-ecEEeecCCCCCCCCc--hhhcCCCCCcEEecc
Q 043351 140 LIKEIP--PNVGKLVHLRYLNLSDKFIETTGVFVNT-----IIMPC-LSSFQIESCPKLKMLP--YYLLQTTKLQELKIY 209 (218)
Q Consensus 140 ~l~~lp--~~i~~L~~L~~L~l~~~~l~~~~~lp~~-----i~~L~-L~~L~l~~~~~l~~lP--~~i~~L~~L~~L~l~ 209 (218)
+..+| ..++.++.|+.|+++.|.+.+ -.+|+. ...+. |+.|++..|+ +...| ..+..+.+|++|.+.
T Consensus 258 -li~~~~~~~~~~l~~L~~Lnls~tgi~s-i~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 258 -LIDFDQGYKVGTLPGLNQLNLSSTGIAS-IAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred -ccccccccccccccchhhhhccccCcch-hcCCCccchhhhcccccceeeecccCc-cccccccchhhccchhhhhhcc
Confidence 65665 458899999999999999875 112443 24567 9999999998 75555 356667788999988
Q ss_pred CCCc
Q 043351 210 LCHI 213 (218)
Q Consensus 210 ~~~~ 213 (218)
.|++
T Consensus 335 ~n~l 338 (505)
T KOG3207|consen 335 LNYL 338 (505)
T ss_pred cccc
Confidence 8874
No 45
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.83 E-value=6.2e-06 Score=68.70 Aligned_cols=89 Identities=20% Similarity=0.188 Sum_probs=74.5
Q ss_pred HHHHhcCCCCcEEEecCCCCccccccccc-CcccCCCCCCCeEeccCCCcccccccccc-ccCce-ecEEeecCCCCCCC
Q 043351 116 QELFGELTCLRALCISNNSFESNNLIKEI-PPNVGKLVHLRYLNLSDKFIETTGVFVNT-IIMPC-LSSFQIESCPKLKM 192 (218)
Q Consensus 116 ~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~~~~lp~~-i~~L~-L~~L~l~~~~~l~~ 192 (218)
...|+++++||.|+|++|. ++.+ +.++..+.+++.|.|..|+++. +... +..+. |++|++.+|+....
T Consensus 267 ~~cf~~L~~L~~lnlsnN~------i~~i~~~aFe~~a~l~eL~L~~N~l~~---v~~~~f~~ls~L~tL~L~~N~it~~ 337 (498)
T KOG4237|consen 267 AKCFKKLPNLRKLNLSNNK------ITRIEDGAFEGAAELQELYLTRNKLEF---VSSGMFQGLSGLKTLSLYDNQITTV 337 (498)
T ss_pred HHHHhhcccceEeccCCCc------cchhhhhhhcchhhhhhhhcCcchHHH---HHHHhhhccccceeeeecCCeeEEE
Confidence 3558899999999999999 7776 5678999999999999999887 6554 46788 99999999994445
Q ss_pred CchhhcCCCCCcEEeccCCCc
Q 043351 193 LPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 193 lP~~i~~L~~L~~L~l~~~~~ 213 (218)
-|..+..+.+|..|++-.|+.
T Consensus 338 ~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 338 APGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred ecccccccceeeeeehccCcc
Confidence 677888999999999998874
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.82 E-value=2.9e-05 Score=65.90 Aligned_cols=106 Identities=13% Similarity=0.126 Sum_probs=72.5
Q ss_pred hccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCC-Ccccc
Q 043351 89 FISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDK-FIETT 167 (218)
Q Consensus 89 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~-~l~~~ 167 (218)
...+..+++++.|.+.++ ....+|. + -.+|+.|.+++|.. +..+|..+. .+|++|++++| .+..
T Consensus 45 ~~r~~~~~~l~~L~Is~c----~L~sLP~-L--P~sLtsL~Lsnc~n-----LtsLP~~LP--~nLe~L~Ls~Cs~L~s- 109 (426)
T PRK15386 45 TPQIEEARASGRLYIKDC----DIESLPV-L--PNELTEITIENCNN-----LTTLPGSIP--EGLEKLTVCHCPEISG- 109 (426)
T ss_pred HHHHHHhcCCCEEEeCCC----CCcccCC-C--CCCCcEEEccCCCC-----cccCCchhh--hhhhheEccCcccccc-
Confidence 334566788999999875 2344452 1 23599999998776 788887553 58999999998 4877
Q ss_pred ccccccccCceecEEeecCCCCCCCCchhhcCC------------------CCCcEEeccCCCcc
Q 043351 168 GVFVNTIIMPCLSSFQIESCPKLKMLPYYLLQT------------------TKLQELKIYLCHIL 214 (218)
Q Consensus 168 ~~lp~~i~~L~L~~L~l~~~~~l~~lP~~i~~L------------------~~L~~L~l~~~~~l 214 (218)
+|+++..|.+ ....|..+..+|.++..| ++|++|++++|..+
T Consensus 110 --LP~sLe~L~L---~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 110 --LPESVRSLEI---KGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred --cccccceEEe---CCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc
Confidence 8876544331 122334467788776555 37899999998754
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.79 E-value=9.8e-06 Score=69.64 Aligned_cols=86 Identities=22% Similarity=0.267 Sum_probs=74.3
Q ss_pred HHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCch
Q 043351 117 ELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPY 195 (218)
Q Consensus 117 ~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~ 195 (218)
..+..+++|..|++..|. ++.+...+..+++|++|++++|.|.. +.. +..+. |+.|++.+|. ++.++
T Consensus 89 ~~l~~~~~l~~l~l~~n~------i~~i~~~l~~~~~L~~L~ls~N~I~~---i~~-l~~l~~L~~L~l~~N~-i~~~~- 156 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNK------IEKIENLLSSLVNLQVLDLSFNKITK---LEG-LSTLTLLKELNLSGNL-ISDIS- 156 (414)
T ss_pred cccccccceeeeeccccc------hhhcccchhhhhcchheecccccccc---ccc-hhhccchhhheeccCc-chhcc-
Confidence 336789999999999999 88886668899999999999999988 644 77888 9999999998 88876
Q ss_pred hhcCCCCCcEEeccCCCcc
Q 043351 196 YLLQTTKLQELKIYLCHIL 214 (218)
Q Consensus 196 ~i~~L~~L~~L~l~~~~~l 214 (218)
.+..+++|+.+++++|.+.
T Consensus 157 ~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 157 GLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred CCccchhhhcccCCcchhh
Confidence 6777999999999999853
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.71 E-value=2e-05 Score=71.58 Aligned_cols=109 Identities=18% Similarity=0.145 Sum_probs=78.6
Q ss_pred CCCeeEEEeccccccchhhhHHHHH-hcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCcccccccccc
Q 043351 95 EKVCHSILTLSFISVNSRNLLQELF-GELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNT 173 (218)
Q Consensus 95 ~~~Lr~L~l~~~~~~~~~~~~~~~~-~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~ 173 (218)
-.+|+.|++.+... ....+|..+ ..||+|+.|.+++-.+. ..++-.-...+++|+.||++++.+.. + ..
T Consensus 121 r~nL~~LdI~G~~~--~s~~W~~kig~~LPsL~sL~i~~~~~~----~~dF~~lc~sFpNL~sLDIS~TnI~n---l-~G 190 (699)
T KOG3665|consen 121 RQNLQHLDISGSEL--FSNGWPKKIGTMLPSLRSLVISGRQFD----NDDFSQLCASFPNLRSLDISGTNISN---L-SG 190 (699)
T ss_pred HHhhhhcCccccch--hhccHHHHHhhhCcccceEEecCceec----chhHHHHhhccCccceeecCCCCccC---c-HH
Confidence 45788888877543 233334333 56999999999987631 12233334678899999999999988 7 78
Q ss_pred ccCce-ecEEeecCCCCCCCCc--hhhcCCCCCcEEeccCCCcc
Q 043351 174 IIMPC-LSSFQIESCPKLKMLP--YYLLQTTKLQELKIYLCHIL 214 (218)
Q Consensus 174 i~~L~-L~~L~l~~~~~l~~lP--~~i~~L~~L~~L~l~~~~~l 214 (218)
++.|+ ||+|.+++=. ++.-+ ..+.+|++|++||++.....
T Consensus 191 IS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred HhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccc
Confidence 99999 9999998544 44333 35679999999999987643
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.57 E-value=1.1e-05 Score=58.12 Aligned_cols=60 Identities=15% Similarity=0.215 Sum_probs=31.2
Q ss_pred CeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccc
Q 043351 97 VCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIET 166 (218)
Q Consensus 97 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~ 166 (218)
.+++|.+.++ ....+|..+..++.||.|+++.|. +...|.-+..|.+|-+|+..++.+..
T Consensus 78 t~t~lNl~~n----eisdvPeE~Aam~aLr~lNl~~N~------l~~~p~vi~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 78 TATTLNLANN----EISDVPEELAAMPALRSLNLRFNP------LNAEPRVIAPLIKLDMLDSPENARAE 137 (177)
T ss_pred hhhhhhcchh----hhhhchHHHhhhHHhhhcccccCc------cccchHHHHHHHhHHHhcCCCCcccc
Confidence 4555555542 233444445555555555555555 44555555555555555555555544
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.51 E-value=3.3e-06 Score=75.20 Aligned_cols=109 Identities=17% Similarity=0.066 Sum_probs=83.7
Q ss_pred hhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCC-CCCCCeEeccCCCccc
Q 043351 88 LFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGK-LVHLRYLNLSDKFIET 166 (218)
Q Consensus 88 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~-L~~L~~L~l~~~~l~~ 166 (218)
+-.++.-++.++.|+++.|.. ... +.+..++.|+.|||++|. +..+|. ++. =.+|..|.+++|.+++
T Consensus 179 mD~SLqll~ale~LnLshNk~----~~v-~~Lr~l~~LkhLDlsyN~------L~~vp~-l~~~gc~L~~L~lrnN~l~t 246 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKF----TKV-DNLRRLPKLKHLDLSYNC------LRHVPQ-LSMVGCKLQLLNLRNNALTT 246 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhh----hhh-HHHHhcccccccccccch------hccccc-cchhhhhheeeeecccHHHh
Confidence 344556678899999998643 222 368899999999999999 888885 322 1249999999999988
Q ss_pred cccccccccCce-ecEEeecCCCCCCCCc--hhhcCCCCCcEEeccCCCc
Q 043351 167 TGVFVNTIIMPC-LSSFQIESCPKLKMLP--YYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 167 ~~~lp~~i~~L~-L~~L~l~~~~~l~~lP--~~i~~L~~L~~L~l~~~~~ 213 (218)
+ ..|.+|. |+.||+++|- +...- ..++.|..|+.|++.||+.
T Consensus 247 ---L-~gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 247 ---L-RGIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ---h-hhHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 6 4588999 9999999886 33221 2467888999999999985
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.34 E-value=0.00015 Score=59.60 Aligned_cols=148 Identities=15% Similarity=0.162 Sum_probs=94.8
Q ss_pred cccCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEecccccc-chhhhHHHHHhcCCCCcEEEecCCCCc
Q 043351 58 SSFDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISV-NSRNLLQELFGELTCLRALCISNNSFE 136 (218)
Q Consensus 58 ~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~-~~~~~~~~~~~~l~~Lr~L~L~~~~~~ 136 (218)
...+.++|-+....+..... .+ ..+...+...+.|+.+.+.++... .....+...+..+++|++|||+.|.+-
T Consensus 153 ~~~~~~Lrv~i~~rNrlen~---ga---~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 153 AASKPKLRVFICGRNRLENG---GA---TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred cCCCcceEEEEeeccccccc---cH---HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 34566777777776654311 11 233445566678888888776542 122356677889999999999999830
Q ss_pred ccccccccCcccCCCCCCCeEeccCCCccccccc--cccc-cCce-ecEEeecCCCCCCC-----CchhhcCCCCCcEEe
Q 043351 137 SNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVF--VNTI-IMPC-LSSFQIESCPKLKM-----LPYYLLQTTKLQELK 207 (218)
Q Consensus 137 ~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~l--p~~i-~~L~-L~~L~l~~~~~l~~-----lP~~i~~L~~L~~L~ 207 (218)
.- .-..+...++.+++|+.|+++.|.++..|.. -..+ ...+ |++|.+.+|. ++. +-..+...+.|+.|+
T Consensus 227 ~e-gs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLn 304 (382)
T KOG1909|consen 227 LE-GSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLN 304 (382)
T ss_pred hH-HHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhc
Confidence 00 0012445677888999999999988764422 2222 2256 9999999887 432 233456678899999
Q ss_pred ccCCCc
Q 043351 208 IYLCHI 213 (218)
Q Consensus 208 l~~~~~ 213 (218)
+++|..
T Consensus 305 LngN~l 310 (382)
T KOG1909|consen 305 LNGNRL 310 (382)
T ss_pred CCcccc
Confidence 999975
No 52
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=8.6e-05 Score=60.08 Aligned_cols=121 Identities=17% Similarity=0.176 Sum_probs=78.2
Q ss_pred hhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccc---ccccccCc-----------------
Q 043351 87 ELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESN---NLIKEIPP----------------- 146 (218)
Q Consensus 87 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~---~~l~~lp~----------------- 146 (218)
.+-..+.+-..|+.++++.+.+ -......-.+.+++.|..|++++|..-.. .-+.++.+
T Consensus 225 ~I~~~iAkN~~L~~lnlsm~sG-~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s 303 (419)
T KOG2120|consen 225 PIVNTIAKNSNLVRLNLSMCSG-FTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS 303 (419)
T ss_pred HHHHHHhccccceeeccccccc-cchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh
Confidence 3455667778888888877654 33344555678888888888888863110 00001111
Q ss_pred ----ccCCCCCCCeEeccCCC-ccccccccccccCce-ecEEeecCCCCCCCCch---hhcCCCCCcEEeccCCC
Q 043351 147 ----NVGKLVHLRYLNLSDKF-IETTGVFVNTIIMPC-LSSFQIESCPKLKMLPY---YLLQTTKLQELKIYLCH 212 (218)
Q Consensus 147 ----~i~~L~~L~~L~l~~~~-l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~---~i~~L~~L~~L~l~~~~ 212 (218)
-..+.++|..|||+.|. ++. + .-..+.++. ||+|.++.|..+ .|. .+..+++|.+|++.+|-
T Consensus 304 h~~tL~~rcp~l~~LDLSD~v~l~~-~-~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 304 HLSTLVRRCPNLVHLDLSDSVMLKN-D-CFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHHHHHHhCCceeeeccccccccCc-h-HHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 12456788888888876 532 2 334567888 999999999843 333 35778889999998874
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.06 E-value=0.001 Score=50.99 Aligned_cols=86 Identities=22% Similarity=0.296 Sum_probs=49.5
Q ss_pred HhcCCCCcEEEecCCCCcccccccccCcccCC-CCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCch-
Q 043351 119 FGELTCLRALCISNNSFESNNLIKEIPPNVGK-LVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPY- 195 (218)
Q Consensus 119 ~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~-L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~- 195 (218)
|+.++.|..|.+++|. |..+-+.+.. +++|..|.|.+|.|.+-|.+- -+..++ |+.|.+-+|+ .+..+.
T Consensus 60 lp~l~rL~tLll~nNr------It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~-pLa~~p~L~~Ltll~Np-v~~k~~Y 131 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNR------ITRIDPDLDTFLPNLKTLILTNNSIQELGDLD-PLASCPKLEYLTLLGNP-VEHKKNY 131 (233)
T ss_pred CCCccccceEEecCCc------ceeeccchhhhccccceEEecCcchhhhhhcc-hhccCCccceeeecCCc-hhcccCc
Confidence 5566677777777776 6666555543 345777777777766512121 234455 6666666665 433332
Q ss_pred ---hhcCCCCCcEEeccCCC
Q 043351 196 ---YLLQTTKLQELKIYLCH 212 (218)
Q Consensus 196 ---~i~~L~~L~~L~l~~~~ 212 (218)
.+.++++|+.||..+-.
T Consensus 132 R~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 132 RLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeEEEEecCcceEeehhhhh
Confidence 24667777777766543
No 54
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.93 E-value=0.00047 Score=33.37 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=9.3
Q ss_pred CCeEeccCCCcccccccccccc
Q 043351 154 LRYLNLSDKFIETTGVFVNTII 175 (218)
Q Consensus 154 L~~L~l~~~~l~~~~~lp~~i~ 175 (218)
|++|++++|.++. +|++++
T Consensus 2 L~~Ldls~n~l~~---ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTS---IPSSFS 20 (22)
T ss_dssp ESEEEETSSEESE---EGTTTT
T ss_pred ccEEECCCCcCEe---CChhhc
Confidence 4455555555444 554443
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.80 E-value=0.00087 Score=53.08 Aligned_cols=88 Identities=23% Similarity=0.197 Sum_probs=53.9
Q ss_pred HhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCch--
Q 043351 119 FGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPY-- 195 (218)
Q Consensus 119 ~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~-- 195 (218)
|..|++|+.|.++.|.... ...++.....+++|++|++++|+++...+++ ...++. |..|++.+|. ...+-.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~---~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~-~~~l~dyr 135 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRV---SGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCS-VTNLDDYR 135 (260)
T ss_pred CCCcchhhhhcccCCcccc---cccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCC-ccccccHH
Confidence 5568888888888883100 3345444556688999999988876411122 234566 7788888777 333321
Q ss_pred --hhcCCCCCcEEeccCC
Q 043351 196 --YLLQTTKLQELKIYLC 211 (218)
Q Consensus 196 --~i~~L~~L~~L~l~~~ 211 (218)
.+.-|++|++|+-...
T Consensus 136 e~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 136 EKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred HHHHHHhhhhcccccccc
Confidence 2456677777765443
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.74 E-value=0.002 Score=49.42 Aligned_cols=77 Identities=17% Similarity=0.190 Sum_probs=33.7
Q ss_pred CcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccccccccccCce--ecEEeecCCCCCCCCc--hhhcCC
Q 043351 125 LRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC--LSSFQIESCPKLKMLP--YYLLQT 200 (218)
Q Consensus 125 Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~--L~~L~l~~~~~l~~lP--~~i~~L 200 (218)
...+||+.|. +..++. +..++.|.+|.+.+|.|.. +-+.+..+. |++|.+.+|. +.++- ..+..+
T Consensus 44 ~d~iDLtdNd------l~~l~~-lp~l~rL~tLll~nNrIt~---I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~ 112 (233)
T KOG1644|consen 44 FDAIDLTDND------LRKLDN-LPHLPRLHTLLLNNNRITR---IDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASC 112 (233)
T ss_pred cceecccccc------hhhccc-CCCccccceEEecCCccee---eccchhhhccccceEEecCcc-hhhhhhcchhccC
Confidence 3444455444 444332 4444455555555555544 444443332 5555554443 33221 122344
Q ss_pred CCCcEEeccCCC
Q 043351 201 TKLQELKIYLCH 212 (218)
Q Consensus 201 ~~L~~L~l~~~~ 212 (218)
++|++|.+-+|+
T Consensus 113 p~L~~Ltll~Np 124 (233)
T KOG1644|consen 113 PKLEYLTLLGNP 124 (233)
T ss_pred CccceeeecCCc
Confidence 445555554444
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.0009 Score=54.33 Aligned_cols=88 Identities=17% Similarity=0.171 Sum_probs=60.8
Q ss_pred CCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCcccccccccc
Q 043351 94 DEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNT 173 (218)
Q Consensus 94 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~ 173 (218)
..+.++.+++.++.. ..+..+...+.+|+.|++|+++.|+...+ |.++| ..+.+|+.|-|.++.+. +-+.-..
T Consensus 69 ~~~~v~elDL~~N~i-SdWseI~~ile~lP~l~~LNls~N~L~s~--I~~lp---~p~~nl~~lVLNgT~L~-w~~~~s~ 141 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLI-SDWSEIGAILEQLPALTTLNLSCNSLSSD--IKSLP---LPLKNLRVLVLNGTGLS-WTQSTSS 141 (418)
T ss_pred Hhhhhhhhhcccchh-ccHHHHHHHHhcCccceEeeccCCcCCCc--cccCc---ccccceEEEEEcCCCCC-hhhhhhh
Confidence 467788888888654 33455566678899999999999984222 33343 35678899988888763 2225556
Q ss_pred ccCce-ecEEeecCCC
Q 043351 174 IIMPC-LSSFQIESCP 188 (218)
Q Consensus 174 i~~L~-L~~L~l~~~~ 188 (218)
...++ ++.|.++.|+
T Consensus 142 l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDNS 157 (418)
T ss_pred hhcchhhhhhhhccch
Confidence 67777 8888888774
No 58
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.60 E-value=0.0011 Score=31.99 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=18.3
Q ss_pred CCcEEEecCCCCcccccccccCcccCCC
Q 043351 124 CLRALCISNNSFESNNLIKEIPPNVGKL 151 (218)
Q Consensus 124 ~Lr~L~L~~~~~~~~~~l~~lp~~i~~L 151 (218)
+|++|++++|. ++.+|+++++|
T Consensus 1 ~L~~Ldls~n~------l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNN------LTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSE------ESEEGTTTTT-
T ss_pred CccEEECCCCc------CEeCChhhcCC
Confidence 58999999998 88999887754
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.51 E-value=0.0012 Score=52.33 Aligned_cols=91 Identities=13% Similarity=0.114 Sum_probs=53.6
Q ss_pred ccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCcccccc
Q 043351 90 ISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGV 169 (218)
Q Consensus 90 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~ 169 (218)
..+..+++|+.|.++.++. ....-++-....+++|++|++++|.... +..+++ +..+.+|..|++.+|....
T Consensus 59 ~~~P~Lp~LkkL~lsdn~~-~~~~~l~vl~e~~P~l~~l~ls~Nki~~---lstl~p-l~~l~nL~~Ldl~n~~~~~--- 130 (260)
T KOG2739|consen 59 TNFPKLPKLKKLELSDNYR-RVSGGLEVLAEKAPNLKVLNLSGNKIKD---LSTLRP-LKELENLKSLDLFNCSVTN--- 130 (260)
T ss_pred ccCCCcchhhhhcccCCcc-cccccceehhhhCCceeEEeecCCcccc---ccccch-hhhhcchhhhhcccCCccc---
Confidence 3456777888888877643 2223333334566888888888888311 223332 5667778888888877644
Q ss_pred ccc---ccc-Cce-ecEEeecCCC
Q 043351 170 FVN---TII-MPC-LSSFQIESCP 188 (218)
Q Consensus 170 lp~---~i~-~L~-L~~L~l~~~~ 188 (218)
+-. .+. -++ |.+|+-.+..
T Consensus 131 l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 131 LDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred cccHHHHHHHHhhhhccccccccC
Confidence 422 222 234 6666655444
No 60
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.41 E-value=0.0046 Score=51.09 Aligned_cols=124 Identities=15% Similarity=0.150 Sum_probs=83.9
Q ss_pred hccccCCCCeeEEEecccccc-chhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCcccc
Q 043351 89 FISSFDEKVCHSILTLSFISV-NSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETT 167 (218)
Q Consensus 89 ~~~~~~~~~Lr~L~l~~~~~~-~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~ 167 (218)
.+....-+.||++....|... .....+...|...+.|+.+.++.|..... .++-+-..+..++||+.|||+.|.++..
T Consensus 150 ~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~e-G~~al~eal~~~~~LevLdl~DNtft~e 228 (382)
T KOG1909|consen 150 NKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPE-GVTALAEALEHCPHLEVLDLRDNTFTLE 228 (382)
T ss_pred HhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCc-hhHHHHHHHHhCCcceeeecccchhhhH
Confidence 344566778998888776431 23345667788888999999988883100 0112234568889999999999987642
Q ss_pred c--cccccccCce-ecEEeecCCCCCCC-----Cchhh-cCCCCCcEEeccCCCcc
Q 043351 168 G--VFVNTIIMPC-LSSFQIESCPKLKM-----LPYYL-LQTTKLQELKIYLCHIL 214 (218)
Q Consensus 168 ~--~lp~~i~~L~-L~~L~l~~~~~l~~-----lP~~i-~~L~~L~~L~l~~~~~l 214 (218)
| .+...++.++ |+.|++++|. ++. +-..+ ...++|++|.+.+|.+-
T Consensus 229 gs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 229 GSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred HHHHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 2 2345667788 9999999998 432 22223 34678999999999763
No 61
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.31 E-value=8e-05 Score=58.24 Aligned_cols=86 Identities=13% Similarity=0.069 Sum_probs=51.5
Q ss_pred HhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCchhh
Q 043351 119 FGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYL 197 (218)
Q Consensus 119 ~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i 197 (218)
+..++..++||++.+. +..+-..++.++.|..|+++.|.+.. +|...+.+. +..+++-.|+ .+..|-+.
T Consensus 38 i~~~kr~tvld~~s~r------~vn~~~n~s~~t~~~rl~~sknq~~~---~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNR------LVNLGKNFSILTRLVRLDLSKNQIKF---LPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred hhccceeeeehhhhhH------HHhhccchHHHHHHHHHhccHhhHhh---ChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 4455566666666666 44455555556666666666666666 666666666 6666555444 55666666
Q ss_pred cCCCCCcEEeccCCCcc
Q 043351 198 LQTTKLQELKIYLCHIL 214 (218)
Q Consensus 198 ~~L~~L~~L~l~~~~~l 214 (218)
++++.++.++..++...
T Consensus 108 ~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cccCCcchhhhccCcch
Confidence 66666666666665543
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.66 E-value=0.00084 Score=53.98 Aligned_cols=60 Identities=22% Similarity=0.341 Sum_probs=34.1
Q ss_pred HhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccccccc--cccCce-ecEEeecCCC
Q 043351 119 FGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVN--TIIMPC-LSSFQIESCP 188 (218)
Q Consensus 119 ~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~--~i~~L~-L~~L~l~~~~ 188 (218)
..+|+.|.||.|+-|. |..+-+ +..++.|+.|.|+.|.|.. +-. -+.+++ |++|.|..|+
T Consensus 37 c~kMp~lEVLsLSvNk------IssL~p-l~rCtrLkElYLRkN~I~s---ldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNK------ISSLAP-LQRCTRLKELYLRKNCIES---LDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred HHhcccceeEEeeccc------cccchh-HHHHHHHHHHHHHhccccc---HHHHHHHhcCchhhhHhhccCC
Confidence 3456666666666666 555532 5556666666666666554 422 345555 6666665554
No 63
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.53 E-value=0.0096 Score=26.76 Aligned_cols=13 Identities=38% Similarity=0.595 Sum_probs=4.3
Q ss_pred CCeEeccCCCccc
Q 043351 154 LRYLNLSDKFIET 166 (218)
Q Consensus 154 L~~L~l~~~~l~~ 166 (218)
|+.|++++|.+++
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 4444444444433
No 64
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=0.0076 Score=49.12 Aligned_cols=84 Identities=19% Similarity=0.142 Sum_probs=58.3
Q ss_pred hcCCCCcEEEecCCCCcccccccc---cCcccCCCCCCCeEeccCCCccc-cccccccccCce-ecEEeecCCCC-CCCC
Q 043351 120 GELTCLRALCISNNSFESNNLIKE---IPPNVGKLVHLRYLNLSDKFIET-TGVFVNTIIMPC-LSSFQIESCPK-LKML 193 (218)
Q Consensus 120 ~~l~~Lr~L~L~~~~~~~~~~l~~---lp~~i~~L~~L~~L~l~~~~l~~-~~~lp~~i~~L~-L~~L~l~~~~~-l~~l 193 (218)
.....++.|||.+|. +.. +-.-+.+|++|++|+++.|++.. .+.+| -.+. |++|-+.+... .+..
T Consensus 68 ~~~~~v~elDL~~N~------iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~ 138 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNL------ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQS 138 (418)
T ss_pred HHhhhhhhhhcccch------hccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhh
Confidence 567789999999998 543 32335789999999999998643 22244 3455 88888887662 2233
Q ss_pred chhhcCCCCCcEEeccCCC
Q 043351 194 PYYLLQTTKLQELKIYLCH 212 (218)
Q Consensus 194 P~~i~~L~~L~~L~l~~~~ 212 (218)
-..+..+++++.|.++.|+
T Consensus 139 ~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 139 TSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred hhhhhcchhhhhhhhccch
Confidence 4445677788888888774
No 65
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.23 E-value=0.015 Score=26.13 Aligned_cols=17 Identities=41% Similarity=0.673 Sum_probs=11.1
Q ss_pred CCCcEEEecCCCCcccccccccC
Q 043351 123 TCLRALCISNNSFESNNLIKEIP 145 (218)
Q Consensus 123 ~~Lr~L~L~~~~~~~~~~l~~lp 145 (218)
++|+.|++++|. ++++|
T Consensus 1 ~~L~~L~l~~n~------L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR------LTSLP 17 (17)
T ss_dssp TT-SEEEETSS--------SSE-
T ss_pred CccCEEECCCCC------CCCCc
Confidence 478999999999 77776
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.89 E-value=0.0014 Score=52.70 Aligned_cols=81 Identities=19% Similarity=0.170 Sum_probs=63.9
Q ss_pred cCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCc--hhh
Q 043351 121 ELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLP--YYL 197 (218)
Q Consensus 121 ~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP--~~i 197 (218)
.+.+.+.|+.-+|. +..+. -+.+++.|+.|.|+-|+|.. |.+ +...+ |+.|+|+.|. +..+- ..+
T Consensus 17 dl~~vkKLNcwg~~------L~DIs-ic~kMp~lEVLsLSvNkIss---L~p-l~rCtrLkElYLRkN~-I~sldEL~YL 84 (388)
T KOG2123|consen 17 DLENVKKLNCWGCG------LDDIS-ICEKMPLLEVLSLSVNKISS---LAP-LQRCTRLKELYLRKNC-IESLDELEYL 84 (388)
T ss_pred HHHHhhhhcccCCC------ccHHH-HHHhcccceeEEeecccccc---chh-HHHHHHHHHHHHHhcc-cccHHHHHHH
Confidence 35567788888888 66653 25688999999999999988 744 67788 9999999887 66554 256
Q ss_pred cCCCCCcEEeccCCCc
Q 043351 198 LQTTKLQELKIYLCHI 213 (218)
Q Consensus 198 ~~L~~L~~L~l~~~~~ 213 (218)
.+|++|+.|.+..|+-
T Consensus 85 knlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPC 100 (388)
T ss_pred hcCchhhhHhhccCCc
Confidence 8899999999998873
No 67
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.11 E-value=0.04 Score=27.47 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=10.5
Q ss_pred CCCCeEeccCCCcccccccccc
Q 043351 152 VHLRYLNLSDKFIETTGVFVNT 173 (218)
Q Consensus 152 ~~L~~L~l~~~~l~~~~~lp~~ 173 (218)
++|++|++++|.++. +|..
T Consensus 2 ~~L~~L~L~~N~l~~---lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSS---LPPG 20 (26)
T ss_pred CCCCEEECCCCcCCc---CCHH
Confidence 455555555555555 5544
No 68
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.11 E-value=0.04 Score=27.47 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=10.5
Q ss_pred CCCCeEeccCCCcccccccccc
Q 043351 152 VHLRYLNLSDKFIETTGVFVNT 173 (218)
Q Consensus 152 ~~L~~L~l~~~~l~~~~~lp~~ 173 (218)
++|++|++++|.++. +|..
T Consensus 2 ~~L~~L~L~~N~l~~---lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSS---LPPG 20 (26)
T ss_pred CCCCEEECCCCcCCc---CCHH
Confidence 455555555555555 5544
No 69
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.42 E-value=0.0015 Score=51.36 Aligned_cols=85 Identities=15% Similarity=-0.062 Sum_probs=46.7
Q ss_pred cccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccccc
Q 043351 91 SSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVF 170 (218)
Q Consensus 91 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~l 170 (218)
.+...+..+.|+++.+. ...+...|+.+..|..|+++.+. +..+|...+++..++.+++..|..+. .
T Consensus 37 ei~~~kr~tvld~~s~r----~vn~~~n~s~~t~~~rl~~sknq------~~~~~~d~~q~~e~~~~~~~~n~~~~---~ 103 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNR----LVNLGKNFSILTRLVRLDLSKNQ------IKFLPKDAKQQRETVNAASHKNNHSQ---Q 103 (326)
T ss_pred hhhccceeeeehhhhhH----HHhhccchHHHHHHHHHhccHhh------HhhChhhHHHHHHHHHHHhhccchhh---C
Confidence 34445555555555432 22233334445555556666665 56666666666666666655555555 6
Q ss_pred cccccCce-ecEEeecCCC
Q 043351 171 VNTIIMPC-LSSFQIESCP 188 (218)
Q Consensus 171 p~~i~~L~-L~~L~l~~~~ 188 (218)
|.+.++++ ++.+++.++.
T Consensus 104 p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 104 PKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred CccccccCCcchhhhccCc
Confidence 66666666 6666665554
No 70
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.24 E-value=0.1 Score=25.89 Aligned_cols=21 Identities=43% Similarity=0.733 Sum_probs=17.8
Q ss_pred CCCCcEEEecCCCCcccccccccCccc
Q 043351 122 LTCLRALCISNNSFESNNLIKEIPPNV 148 (218)
Q Consensus 122 l~~Lr~L~L~~~~~~~~~~l~~lp~~i 148 (218)
+++|+.|+|++|. ++.+|...
T Consensus 1 L~~L~~L~L~~N~------l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQ------LSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCc------CCcCCHHH
Confidence 4689999999999 99998754
No 71
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.24 E-value=0.1 Score=25.89 Aligned_cols=21 Identities=43% Similarity=0.733 Sum_probs=17.8
Q ss_pred CCCCcEEEecCCCCcccccccccCccc
Q 043351 122 LTCLRALCISNNSFESNNLIKEIPPNV 148 (218)
Q Consensus 122 l~~Lr~L~L~~~~~~~~~~l~~lp~~i 148 (218)
+++|+.|+|++|. ++.+|...
T Consensus 1 L~~L~~L~L~~N~------l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQ------LSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCc------CCcCCHHH
Confidence 4689999999999 99998754
No 72
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.11 E-value=0.057 Score=44.20 Aligned_cols=61 Identities=20% Similarity=0.145 Sum_probs=45.3
Q ss_pred HhcCCCCcEEEecCCCCcccccccc-cCcccCCCCCCCeEeccCCCcccccccccc---ccCce-ecEEeecCCC
Q 043351 119 FGELTCLRALCISNNSFESNNLIKE-IPPNVGKLVHLRYLNLSDKFIETTGVFVNT---IIMPC-LSSFQIESCP 188 (218)
Q Consensus 119 ~~~l~~Lr~L~L~~~~~~~~~~l~~-lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~---i~~L~-L~~L~l~~~~ 188 (218)
-.++++|..|||+.|.. ++. +-..+-+++.|++|+++.|..- .|.. +...+ |.+|++-+|-
T Consensus 309 ~~rcp~l~~LDLSD~v~-----l~~~~~~~~~kf~~L~~lSlsRCY~i----~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 309 VRRCPNLVHLDLSDSVM-----LKNDCFQEFFKFNYLQHLSLSRCYDI----IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHhCCceeeeccccccc-----cCchHHHHHHhcchheeeehhhhcCC----ChHHeeeeccCcceEEEEecccc
Confidence 46899999999999874 332 2245678899999999999731 4543 45667 9999998875
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.77 E-value=0.55 Score=32.82 Aligned_cols=102 Identities=15% Similarity=0.185 Sum_probs=44.6
Q ss_pred cccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCc-ccCCCCCCCeEeccCCCcccccc
Q 043351 91 SSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPP-NVGKLVHLRYLNLSDKFIETTGV 169 (218)
Q Consensus 91 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~~~~ 169 (218)
.+.++++|+.+.+... ....-...|..++.|+.+.+..+ +..++. .+..++.|+.+.+.+ .+..
T Consensus 7 ~F~~~~~l~~i~~~~~----~~~I~~~~F~~~~~l~~i~~~~~-------~~~i~~~~F~~~~~l~~i~~~~-~~~~--- 71 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT----IKKIGENAFSNCTSLKSINFPNN-------LTSIGDNAFSNCKSLESITFPN-NLKS--- 71 (129)
T ss_dssp TTTT-TT--EEEETST------EE-TTTTTT-TT-SEEEESST-------TSCE-TTTTTT-TT-EEEEETS-TT-E---
T ss_pred HHhCCCCCCEEEECCC----eeEeChhhccccccccccccccc-------ccccceeeeecccccccccccc-cccc---
Confidence 4556666777666541 22333444666667777776552 444442 345555677777754 4444
Q ss_pred ccccc-cCce-ecEEeecCCCCCCCCch-hhcCCCCCcEEeccC
Q 043351 170 FVNTI-IMPC-LSSFQIESCPKLKMLPY-YLLQTTKLQELKIYL 210 (218)
Q Consensus 170 lp~~i-~~L~-L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~ 210 (218)
++... .... |+.+++..+ +..++. .+.+. +|+.+.+..
T Consensus 72 i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 72 IGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp E-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 44433 3355 777776532 444443 23444 666666554
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.35 E-value=0.062 Score=41.37 Aligned_cols=83 Identities=14% Similarity=0.150 Sum_probs=48.5
Q ss_pred CeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCC-cccccccccccc
Q 043351 97 VCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKF-IETTGVFVNTII 175 (218)
Q Consensus 97 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~-l~~~~~lp~~i~ 175 (218)
.++.++-++. .+...--+.+..++.++.|.+.+|...+|--++.+- +-.++|+.|++++|+ |++.| -..+.
T Consensus 102 ~IeaVDAsds---~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~---~~~~~L~~L~lsgC~rIT~~G--L~~L~ 173 (221)
T KOG3864|consen 102 KIEAVDASDS---SIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLG---GLAPSLQDLDLSGCPRITDGG--LACLL 173 (221)
T ss_pred eEEEEecCCc---hHHHHHHHHHhccchhhhheeccccchhhHHHHHhc---ccccchheeeccCCCeechhH--HHHHH
Confidence 3555554443 223333455777888888888888752222222221 134689999999888 76522 13456
Q ss_pred Cce-ecEEeecCC
Q 043351 176 MPC-LSSFQIESC 187 (218)
Q Consensus 176 ~L~-L~~L~l~~~ 187 (218)
+++ |+.|.+.+-
T Consensus 174 ~lknLr~L~l~~l 186 (221)
T KOG3864|consen 174 KLKNLRRLHLYDL 186 (221)
T ss_pred HhhhhHHHHhcCc
Confidence 667 777776643
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=88.83 E-value=1 Score=31.45 Aligned_cols=98 Identities=16% Similarity=0.199 Sum_probs=49.8
Q ss_pred hccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCc-ccCCCCCCCeEeccCCCcccc
Q 043351 89 FISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPP-NVGKLVHLRYLNLSDKFIETT 167 (218)
Q Consensus 89 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~~ 167 (218)
...+..+++|+.+.+... ........|..++.|+.+.+.. . +..++. .+....+|+.+.+..+ +..
T Consensus 28 ~~~F~~~~~l~~i~~~~~----~~~i~~~~F~~~~~l~~i~~~~-~------~~~i~~~~F~~~~~l~~i~~~~~-~~~- 94 (129)
T PF13306_consen 28 ENAFSNCTSLKSINFPNN----LTSIGDNAFSNCKSLESITFPN-N------LKSIGDNAFSNCTNLKNIDIPSN-ITE- 94 (129)
T ss_dssp TTTTTT-TT-SEEEESST----TSCE-TTTTTT-TT-EEEEETS-T------T-EE-TTTTTT-TTECEEEETTT--BE-
T ss_pred hhhccccccccccccccc----ccccceeeeecccccccccccc-c------ccccccccccccccccccccCcc-ccE-
Confidence 446778888999988763 2233345578888899999976 4 555654 4566899999999765 666
Q ss_pred ccccccccCce-ecEEeecCCCCCCCCch-hhcCCCCC
Q 043351 168 GVFVNTIIMPC-LSSFQIESCPKLKMLPY-YLLQTTKL 203 (218)
Q Consensus 168 ~~lp~~i~~L~-L~~L~l~~~~~l~~lP~-~i~~L~~L 203 (218)
++...-.=. |+.+.+.. .+..++. .+.+.++|
T Consensus 95 --i~~~~f~~~~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 95 --IGSSSFSNCNLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp --EHTTTTTT-T--EEE-TT--B-SS----GGG-----
T ss_pred --EchhhhcCCCceEEEECC--CccEECCccccccccC
Confidence 665543334 77777653 2455553 23444444
No 76
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=88.35 E-value=2.2 Score=34.77 Aligned_cols=47 Identities=17% Similarity=0.045 Sum_probs=35.4
Q ss_pred hhccccCCCCeeEEEeccccc-cchhhhHHHHHhcCCCCcEEEecCCC
Q 043351 88 LFISSFDEKVCHSILTLSFIS-VNSRNLLQELFGELTCLRALCISNNS 134 (218)
Q Consensus 88 ~~~~~~~~~~Lr~L~l~~~~~-~~~~~~~~~~~~~l~~Lr~L~L~~~~ 134 (218)
..+.+.+|++|++..++.+.. +.....+.+.+++-..|..|.+++|.
T Consensus 84 Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 84 LLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred HHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 455677899999999887654 23344566777888889999999987
No 77
>PF14162 YozD: YozD-like protein
Probab=85.63 E-value=0.95 Score=26.46 Aligned_cols=22 Identities=5% Similarity=0.119 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhCCCccccc
Q 043351 8 CIVLLSSYFNISATRSFFQEFN 29 (218)
Q Consensus 8 ~e~~~~~y~~~L~~rsli~~~~ 29 (218)
.|++|+-+|.+|+.||++-...
T Consensus 10 TEEIAefFy~eL~kRGyvP~e~ 31 (57)
T PF14162_consen 10 TEEIAEFFYHELVKRGYVPTEE 31 (57)
T ss_pred HHHHHHHHHHHHHHccCCCcHH
Confidence 3799999999999999996533
No 78
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=85.38 E-value=2.8 Score=34.26 Aligned_cols=95 Identities=16% Similarity=0.133 Sum_probs=60.6
Q ss_pred CCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccch-------hhhHHHHHhcCCCCcEEEecCC
Q 043351 61 DEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNS-------RNLLQELFGELTCLRALCISNN 133 (218)
Q Consensus 61 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~-------~~~~~~~~~~l~~Lr~L~L~~~ 133 (218)
...+..+.++++.+.. ..+..+...+.+-++|+...++....... ...+.+.+-+|++|+..+|+.|
T Consensus 29 ~d~~~evdLSGNtigt------EA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 29 MDELVEVDLSGNTIGT------EAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred hcceeEEeccCCcccH------HHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 4556777777665531 11233455566677788777665433221 2233444678999999999999
Q ss_pred CCcccccccccCc----ccCCCCCCCeEeccCCCccc
Q 043351 134 SFESNNLIKEIPP----NVGKLVHLRYLNLSDKFIET 166 (218)
Q Consensus 134 ~~~~~~~l~~lp~----~i~~L~~L~~L~l~~~~l~~ 166 (218)
.+ -...|+ -|++-..|.+|.+++|.+..
T Consensus 103 Af-----g~~~~e~L~d~is~~t~l~HL~l~NnGlGp 134 (388)
T COG5238 103 AF-----GSEFPEELGDLISSSTDLVHLKLNNNGLGP 134 (388)
T ss_pred cc-----CcccchHHHHHHhcCCCceeEEeecCCCCc
Confidence 85 444554 35666789999999888654
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=84.70 E-value=0.63 Score=23.33 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=8.0
Q ss_pred CCCeEeccCCCccc
Q 043351 153 HLRYLNLSDKFIET 166 (218)
Q Consensus 153 ~L~~L~l~~~~l~~ 166 (218)
+|++|++++|.++.
T Consensus 3 ~L~~L~vs~N~Lt~ 16 (26)
T smart00364 3 SLKELNVSNNQLTS 16 (26)
T ss_pred ccceeecCCCcccc
Confidence 45555555555555
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=82.70 E-value=1.2 Score=22.26 Aligned_cols=15 Identities=33% Similarity=0.423 Sum_probs=8.5
Q ss_pred CCCCeEeccCCCccc
Q 043351 152 VHLRYLNLSDKFIET 166 (218)
Q Consensus 152 ~~L~~L~l~~~~l~~ 166 (218)
.+|+.|++++|.|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 455566666665544
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.66 E-value=0.64 Score=35.95 Aligned_cols=68 Identities=24% Similarity=0.106 Sum_probs=36.6
Q ss_pred hhccccCCCCeeEEEeccccccchhh-hHHHHHhcCCCCcEEEecCCCCcccccccccC-cccCCCCCCCeEeccCC
Q 043351 88 LFISSFDEKVCHSILTLSFISVNSRN-LLQELFGELTCLRALCISNNSFESNNLIKEIP-PNVGKLVHLRYLNLSDK 162 (218)
Q Consensus 88 ~~~~~~~~~~Lr~L~l~~~~~~~~~~-~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~~L~l~~~ 162 (218)
-.+.+..++.+++|.+.++.. ... .+...-.-.++|+.|++++|.- |++-- ..+.++++||.|.+.+-
T Consensus 117 Gle~L~~l~~i~~l~l~~ck~--~dD~~L~~l~~~~~~L~~L~lsgC~r-----IT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 117 GLEHLRDLRSIKSLSLANCKY--FDDWCLERLGGLAPSLQDLDLSGCPR-----ITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred HHHHHhccchhhhheeccccc--hhhHHHHHhcccccchheeeccCCCe-----echhHHHHHHHhhhhHHHHhcCc
Confidence 344556666666666665432 111 1111112456677777777764 54321 34566777777766543
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=82.66 E-value=0.71 Score=39.93 Aligned_cols=112 Identities=19% Similarity=0.169 Sum_probs=53.9
Q ss_pred CCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCC-CCcccccccccC----cccCCCCCCCeEeccCCC-ccccc
Q 043351 95 EKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNN-SFESNNLIKEIP----PNVGKLVHLRYLNLSDKF-IETTG 168 (218)
Q Consensus 95 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~-~~~~~~~l~~lp----~~i~~L~~L~~L~l~~~~-l~~~~ 168 (218)
.+.|+.+.+..... .....+-.....++.|+.|+++++ .. ....| .....+.+|+.|+++++. +..
T Consensus 187 ~~~L~~l~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd-- 258 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSK-ITDDSLDALALKCPNLEELDLSGCCLL-----ITLSPLLLLLLLSICRKLKSLDLSGCGLVTD-- 258 (482)
T ss_pred CchhhHhhhccccc-CChhhHHHHHhhCchhheecccCcccc-----cccchhHhhhhhhhcCCcCccchhhhhccCc--
Confidence 45555555554322 111113344556777777777662 21 11111 223344666777776665 432
Q ss_pred cccccccC-ce-ecEEeecCCCCCCC--CchhhcCCCCCcEEeccCCCcc
Q 043351 169 VFVNTIIM-PC-LSSFQIESCPKLKM--LPYYLLQTTKLQELKIYLCHIL 214 (218)
Q Consensus 169 ~lp~~i~~-L~-L~~L~l~~~~~l~~--lP~~i~~L~~L~~L~l~~~~~l 214 (218)
..=..+.. .+ |++|.+.+|..++. +-....++++|++|+++.|..+
T Consensus 259 ~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 259 IGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 01112222 45 77777666664322 1112245566777777776653
No 83
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=81.28 E-value=0.74 Score=39.80 Aligned_cols=117 Identities=18% Similarity=0.141 Sum_probs=66.1
Q ss_pred ccccCCCCeeEEEeccc-cc-cchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCC-ccc
Q 043351 90 ISSFDEKVCHSILTLSF-IS-VNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKF-IET 166 (218)
Q Consensus 90 ~~~~~~~~Lr~L~l~~~-~~-~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~-l~~ 166 (218)
.....++.|+.|.+.++ .. .............+++|+.|+++++....+..+..+ ...+++|+.|.+.++. ++.
T Consensus 208 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l---~~~c~~L~~L~l~~c~~lt~ 284 (482)
T KOG1947|consen 208 ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL---ASRCPNLETLSLSNCSNLTD 284 (482)
T ss_pred HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH---HhhCCCcceEccCCCCccch
Confidence 34567888999988752 11 011122233456778899999999884111111111 1226789999877776 543
Q ss_pred cccccccccCce-ecEEeecCCCCCCC--CchhhcCCCCCcEEeccC
Q 043351 167 TGVFVNTIIMPC-LSSFQIESCPKLKM--LPYYLLQTTKLQELKIYL 210 (218)
Q Consensus 167 ~~~lp~~i~~L~-L~~L~l~~~~~l~~--lP~~i~~L~~L~~L~l~~ 210 (218)
..+-.-....+ |+.|++++|..+.. +.....+.++|+.|.+..
T Consensus 285 -~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 285 -EGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred -hHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 11223335567 99999999886532 332333455555544333
No 84
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=79.95 E-value=1.2 Score=38.27 Aligned_cols=63 Identities=21% Similarity=0.321 Sum_probs=29.2
Q ss_pred CCCCCCeEeccCCC-cccccc--ccccccCce-ecEEeecCCCCCCC-CchhhcCCCCCcEEeccCCC
Q 043351 150 KLVHLRYLNLSDKF-IETTGV--FVNTIIMPC-LSSFQIESCPKLKM-LPYYLLQTTKLQELKIYLCH 212 (218)
Q Consensus 150 ~L~~L~~L~l~~~~-l~~~~~--lp~~i~~L~-L~~L~l~~~~~l~~-lP~~i~~L~~L~~L~l~~~~ 212 (218)
+.+.||.|.+++|. ++..|- +...-..+. |+.+.+++|+.+.+ .-..+...++|+.+++-+|+
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 34556666666555 332110 122223445 66666666663332 11233444556666665554
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=77.03 E-value=1.8 Score=20.77 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=8.7
Q ss_pred CCCCcEEeccCCCc
Q 043351 200 TTKLQELKIYLCHI 213 (218)
Q Consensus 200 L~~L~~L~l~~~~~ 213 (218)
+++|++|++++|.+
T Consensus 1 ~~~L~~L~l~~n~i 14 (24)
T PF13516_consen 1 NPNLETLDLSNNQI 14 (24)
T ss_dssp -TT-SEEE-TSSBE
T ss_pred CCCCCEEEccCCcC
Confidence 36788888888874
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=73.50 E-value=2.6 Score=20.75 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=9.7
Q ss_pred CCCcEEeccCCCccc
Q 043351 201 TKLQELKIYLCHILE 215 (218)
Q Consensus 201 ~~L~~L~l~~~~~l~ 215 (218)
++|++|++++|+.+.
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 467777777776543
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=71.22 E-value=3.5 Score=20.77 Aligned_cols=15 Identities=33% Similarity=0.403 Sum_probs=10.2
Q ss_pred CCCCeEeccCCCccc
Q 043351 152 VHLRYLNLSDKFIET 166 (218)
Q Consensus 152 ~~L~~L~l~~~~l~~ 166 (218)
++|++|+|++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 467777777777643
No 88
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=70.64 E-value=1.7 Score=37.34 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=67.0
Q ss_pred CCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCcccccccccc
Q 043351 94 DEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNT 173 (218)
Q Consensus 94 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~ 173 (218)
+.++|+.+.+..... .....+-..=..++.||+|.+++|..-.+.++..+-..-+.+.+|..+.|++++... ...-+.
T Consensus 344 n~~~Le~l~~e~~~~-~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~-d~~Le~ 421 (483)
T KOG4341|consen 344 NCPHLERLDLEECGL-ITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT-DATLEH 421 (483)
T ss_pred CChhhhhhcccccce-ehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch-HHHHHH
Confidence 455666666555432 111222222357889999999988752222233345556788899999999998421 112234
Q ss_pred ccCce-ecEEeecCCCCCCCCc--hhhcCCCCCcEEe
Q 043351 174 IIMPC-LSSFQIESCPKLKMLP--YYLLQTTKLQELK 207 (218)
Q Consensus 174 i~~L~-L~~L~l~~~~~l~~lP--~~i~~L~~L~~L~ 207 (218)
+...+ |+.+++-+|..+.+-| ....+++++++..
T Consensus 422 l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 422 LSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred HhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 56667 9999998888665443 2235666665543
No 89
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=62.65 E-value=4.4 Score=29.10 Aligned_cols=23 Identities=22% Similarity=0.091 Sum_probs=19.0
Q ss_pred ccchh---HHHHHHHHHHHHHhCCCc
Q 043351 3 VGLGM---CIVLLSSYFNISATRSFF 25 (218)
Q Consensus 3 ~g~g~---~e~~~~~y~~~L~~rsli 25 (218)
-|+|. +.+.|..||++||.+|--
T Consensus 25 AGLGA~ak~~~EG~k~F~~LVk~Ge~ 50 (132)
T PF05597_consen 25 AGLGAYAKAQEEGSKVFEALVKEGEK 50 (132)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 57776 458999999999999864
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=56.86 E-value=5.6 Score=35.43 Aligned_cols=62 Identities=19% Similarity=0.216 Sum_probs=31.0
Q ss_pred hcCCCCcEEEecCCCCcccccccccC---cccCCCCCCCeEeccCC--CccccccccccccCceecEEeecCCC
Q 043351 120 GELTCLRALCISNNSFESNNLIKEIP---PNVGKLVHLRYLNLSDK--FIETTGVFVNTIIMPCLSSFQIESCP 188 (218)
Q Consensus 120 ~~l~~Lr~L~L~~~~~~~~~~l~~lp---~~i~~L~~L~~L~l~~~--~l~~~~~lp~~i~~L~L~~L~l~~~~ 188 (218)
.+.+.+..++|++|+ +..+- +-...-++|+.|+|++| .+....++++ ++.+.|+.|.+.||+
T Consensus 215 ~n~p~i~sl~lsnNr------L~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K-~k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNR------LYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK-LKGLPLEELVLEGNP 281 (585)
T ss_pred cCCcceeeeecccch------hhchhhhhHHHHhcchhheeecccchhhhcchhhhhh-hcCCCHHHeeecCCc
Confidence 355566666677766 43331 11133456777777776 3332001111 222226777777766
No 91
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=55.93 E-value=7.4 Score=27.33 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=22.4
Q ss_pred cccchhH---HHHHHHHHHHHHhCCCccccc
Q 043351 2 IVGLGMC---IVLLSSYFNISATRSFFQEFN 29 (218)
Q Consensus 2 ~~g~g~~---e~~~~~y~~~L~~rsli~~~~ 29 (218)
+.|+|.+ .+-|+.+|++||.+|=+...+
T Consensus 11 LAGLGa~a~~~ek~~k~~~~LVkkGe~~~ee 41 (118)
T TIGR01837 11 LAGIGALARVQEEGSKFFNRLVKEGELAEKR 41 (118)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 3678875 499999999999999876544
No 92
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=33.90 E-value=1.5e+02 Score=19.99 Aligned_cols=41 Identities=5% Similarity=0.085 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHhCCCccccccCCCCeeeEEeChhHHHHHH
Q 043351 7 MCIVLLSSYFNISATRSFFQEFNENTDNIISCKTCDMVHDFSQ 49 (218)
Q Consensus 7 ~~e~~~~~y~~~L~~rsli~~~~~~~~~~~~~~mHdl~~dl~~ 49 (218)
.-...|..|.+.|++++++...+. |+...|..-|-=.++..
T Consensus 43 lny~~~~~yi~~L~~~Gli~~~~~--~~~~~y~lT~KG~~fle 83 (95)
T COG3432 43 LNYKRAQKYIEMLVEKGLIIKQDN--GRRKVYELTEKGKRFLE 83 (95)
T ss_pred cCHHHHHHHHHHHHhCCCEEeccC--CccceEEEChhHHHHHH
Confidence 345789999999999997766553 33345677665555533
No 93
>PF11112 PyocinActivator: Pyocin activator protein PrtN
Probab=33.00 E-value=31 Score=22.21 Aligned_cols=46 Identities=15% Similarity=0.204 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhCCCccccccCCCCeeeEEeCh--------hHHHHHHHHHH
Q 043351 8 CIVLLSSYFNISATRSFFQEFNENTDNIISCKTCD--------MVHDFSQYLSE 53 (218)
Q Consensus 8 ~e~~~~~y~~~L~~rsli~~~~~~~~~~~~~~mHd--------l~~dl~~~i~~ 53 (218)
+|++.++||..|-.+.+.+......=....++|.+ -++|+|.++-+
T Consensus 17 L~~v~~~yf~~lt~~~a~rk~~~g~lplPv~rl~~SqKs~~~V~v~dLA~yiD~ 70 (76)
T PF11112_consen 17 LEEVCEDYFPHLTPKTAKRKANAGELPLPVFRLDDSQKSPKFVHVQDLAAYIDK 70 (76)
T ss_pred HHHHHHHHHccCCHHHHHHHHHCCCCCCceeecCCcccCCceeeHHHHHHHHHH
Confidence 47899999966655555443332211112334443 26888888765
No 94
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=31.07 E-value=86 Score=24.90 Aligned_cols=65 Identities=9% Similarity=0.071 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhCCCccccccCCCCeeeEEeChhHHHHHHHHHHhhcccccCCceeEEEEeeeccc
Q 043351 9 IVLLSSYFNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSEQLVISSFDEKIKRLHISCKMYD 75 (218)
Q Consensus 9 e~~~~~y~~~L~~rsli~~~~~~~~~~~~~~mHdl~~dl~~~i~~~~~~~~~~~~~r~l~l~~~~~~ 75 (218)
|..++.|+..+.+.+||-....+.+-...++.-.++..++-.+...| .+++.++|-+++++....
T Consensus 147 eRlg~~~l~~ike~Gfid~~~rkG~y~~rvt~eSlmdrLntd~h~ac--lkId~~C~VLTvhGs~D~ 211 (269)
T KOG4667|consen 147 ERLGEDYLERIKEQGFIDVGPRKGKYGYRVTEESLMDRLNTDIHEAC--LKIDKQCRVLTVHGSEDE 211 (269)
T ss_pred hhhcccHHHHHHhCCceecCcccCCcCceecHHHHHHHHhchhhhhh--cCcCccCceEEEeccCCc
Confidence 68999999999999999877654222223344446666665555555 468899999999977654
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=30.62 E-value=46 Score=29.93 Aligned_cols=67 Identities=21% Similarity=0.053 Sum_probs=43.2
Q ss_pred CCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCC--CCCeEeccCCCccc
Q 043351 94 DEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLV--HLRYLNLSDKFIET 166 (218)
Q Consensus 94 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~--~L~~L~l~~~~l~~ 166 (218)
+.+.+.++.+.+|.. .....+...-...++|..|+|++|.. .+...+ ++.+++ -|+.|-+.||++.+
T Consensus 216 n~p~i~sl~lsnNrL-~~Ld~~sslsq~apklk~L~LS~N~~----~~~~~~-el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRL-YHLDALSSLSQIAPKLKTLDLSHNHS----KISSES-ELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchh-hchhhhhHHHHhcchhheeecccchh----hhcchh-hhhhhcCCCHHHeeecCCcccc
Confidence 556777777777654 23344445556788999999999931 033332 344443 47889999999654
No 96
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=29.45 E-value=1.2e+02 Score=18.16 Aligned_cols=32 Identities=3% Similarity=0.004 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhCCCccccccC-CCCeeeEEe
Q 043351 9 IVLLSSYFNISATRSFFQEFNEN-TDNIISCKT 40 (218)
Q Consensus 9 e~~~~~y~~~L~~rsli~~~~~~-~~~~~~~~m 40 (218)
...+...+++|+++++|+..... +++...+..
T Consensus 32 ~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~L 64 (68)
T PF13463_consen 32 KSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRL 64 (68)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEe
Confidence 34566889999999999776655 555455543
No 97
>PF13730 HTH_36: Helix-turn-helix domain
Probab=25.24 E-value=62 Score=18.68 Aligned_cols=20 Identities=5% Similarity=0.089 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHhCCCc
Q 043351 6 GMCIVLLSSYFNISATRSFF 25 (218)
Q Consensus 6 g~~e~~~~~y~~~L~~rsli 25 (218)
|.-+.....++++|+++|+|
T Consensus 36 g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 36 GVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CcCHHHHHHHHHHHHHCcCC
Confidence 33366778899999999876
No 98
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=21.44 E-value=58 Score=16.26 Aligned_cols=15 Identities=27% Similarity=0.200 Sum_probs=9.9
Q ss_pred HHhcCCCCcEEEecC
Q 043351 118 LFGELTCLRALCISN 132 (218)
Q Consensus 118 ~~~~l~~Lr~L~L~~ 132 (218)
.|..+++|+.||...
T Consensus 8 Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 8 VIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHCCccceecccc
Confidence 456677777777543
Done!