Query 043351
Match_columns 218
No_of_seqs 263 out of 2353
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 06:44:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043351.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043351hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.6 1E-15 3.6E-20 125.9 9.3 109 95-215 182-291 (328)
2 4fcg_A Uncharacterized protein 99.6 4.3E-16 1.5E-20 128.2 6.5 135 62-214 104-266 (328)
3 3e6j_A Variable lymphocyte rec 99.6 1.8E-15 6.1E-20 118.3 8.9 133 58-213 36-171 (229)
4 2v9t_B SLIT homolog 2 protein 99.6 3.6E-15 1.2E-19 115.9 8.8 132 59-213 29-164 (220)
5 2ell_A Acidic leucine-rich nuc 99.6 1.8E-15 6.3E-20 112.4 5.5 133 58-214 20-160 (168)
6 1ogq_A PGIP-2, polygalacturona 99.6 3.6E-15 1.2E-19 121.8 7.1 131 62-213 50-186 (313)
7 2v70_A SLIT-2, SLIT homolog 2 99.6 5.6E-15 1.9E-19 114.8 7.9 132 59-213 29-165 (220)
8 2o6s_A Variable lymphocyte rec 99.6 1.3E-14 4.5E-19 111.4 9.0 133 59-214 25-161 (208)
9 3m19_A Variable lymphocyte rec 99.6 1.1E-14 3.7E-19 115.2 8.7 109 92-213 79-191 (251)
10 3vq2_A TLR4, TOLL-like recepto 99.5 1.3E-14 4.5E-19 128.0 9.0 133 58-213 28-165 (606)
11 3m19_A Variable lymphocyte rec 99.5 2.1E-14 7.1E-19 113.5 8.5 133 58-213 31-167 (251)
12 4g8a_A TOLL-like receptor 4; l 99.5 1.5E-14 5.1E-19 127.6 8.4 133 58-213 48-185 (635)
13 2je0_A Acidic leucine-rich nuc 99.5 4.6E-15 1.6E-19 108.1 3.8 128 59-210 14-149 (149)
14 4b8c_D Glucose-repressible alc 99.5 7.5E-15 2.6E-19 132.7 5.6 113 88-214 216-329 (727)
15 4ezg_A Putative uncharacterize 99.5 5.1E-14 1.8E-18 107.4 9.0 125 62-212 44-170 (197)
16 4ezg_A Putative uncharacterize 99.5 3.6E-14 1.2E-18 108.2 7.8 126 61-213 65-193 (197)
17 2z62_A TOLL-like receptor 4, v 99.5 4.1E-14 1.4E-18 113.2 8.4 132 59-213 25-161 (276)
18 2z63_A TOLL-like receptor 4, v 99.5 5.6E-14 1.9E-18 122.9 8.9 132 59-213 25-161 (570)
19 2xot_A Amphoterin-induced prot 99.5 7E-14 2.4E-18 116.3 8.7 132 59-213 36-175 (361)
20 2o6q_A Variable lymphocyte rec 99.5 9.3E-14 3.2E-18 110.9 8.9 84 119-212 105-192 (270)
21 3e6j_A Variable lymphocyte rec 99.5 6.3E-14 2.1E-18 109.5 7.6 113 86-213 32-147 (229)
22 1ozn_A Reticulon 4 receptor; N 99.5 8.2E-14 2.8E-18 111.9 8.4 113 89-213 73-189 (285)
23 1p9a_G Platelet glycoprotein I 99.5 8.9E-14 3E-18 112.4 8.3 128 62-213 77-207 (290)
24 4eco_A Uncharacterized protein 99.5 2E-14 6.7E-19 128.1 4.5 84 121-212 247-341 (636)
25 1ogq_A PGIP-2, polygalacturona 99.5 5.5E-14 1.9E-18 114.8 6.7 106 62-188 76-185 (313)
26 2o6q_A Variable lymphocyte rec 99.5 1.7E-13 5.7E-18 109.5 9.0 112 89-213 102-217 (270)
27 1p9a_G Platelet glycoprotein I 99.5 2.7E-13 9.1E-18 109.6 10.3 134 59-212 28-183 (290)
28 4eco_A Uncharacterized protein 99.5 1.1E-13 3.6E-18 123.4 8.1 131 61-213 248-389 (636)
29 3zyi_A Leucine-rich repeat-con 99.5 1.2E-13 4.3E-18 118.0 8.2 132 59-212 72-207 (452)
30 1ziw_A TOLL-like receptor 3; i 99.5 1.6E-13 5.4E-18 122.7 9.1 133 59-213 22-157 (680)
31 2wfh_A SLIT homolog 2 protein 99.4 1.7E-13 5.7E-18 104.4 7.7 112 86-213 23-138 (193)
32 1w8a_A SLIT protein; signaling 99.4 9.6E-14 3.3E-18 105.5 6.3 114 86-213 21-138 (192)
33 2z80_A TOLL-like receptor 2, v 99.4 5.4E-14 1.8E-18 116.4 5.1 85 119-212 120-209 (353)
34 4ecn_A Leucine-rich repeat pro 99.4 2.1E-13 7.3E-18 125.1 9.5 130 61-213 490-631 (876)
35 3v47_A TOLL-like receptor 5B a 99.4 1.4E-13 4.6E-18 117.4 7.7 136 58-214 26-167 (455)
36 1a9n_A U2A', U2A'; complex (nu 99.4 3E-14 1E-18 106.8 3.1 126 61-213 18-152 (176)
37 1ozn_A Reticulon 4 receptor; N 99.4 2.2E-13 7.7E-18 109.4 8.3 86 119-213 149-237 (285)
38 3rfs_A Internalin B, repeat mo 99.4 2.6E-13 8.8E-18 108.5 8.5 108 92-212 105-216 (272)
39 3zyj_A Leucine-rich repeat-con 99.4 2.3E-13 7.9E-18 115.9 8.6 133 58-212 60-196 (440)
40 2z81_A CD282 antigen, TOLL-lik 99.4 6.8E-14 2.3E-18 122.0 5.3 133 60-212 24-159 (549)
41 2z7x_B TOLL-like receptor 1, v 99.4 1.3E-12 4.5E-17 113.2 13.0 133 60-213 322-480 (520)
42 3v47_A TOLL-like receptor 5B a 99.4 2.5E-13 8.5E-18 115.8 8.2 130 62-213 275-407 (455)
43 2v9t_B SLIT homolog 2 protein 99.4 2.1E-13 7.3E-18 105.8 7.1 112 87-213 25-140 (220)
44 1wwl_A Monocyte differentiatio 99.4 1.2E-12 4.2E-17 106.6 11.9 108 93-213 198-308 (312)
45 3oja_A Leucine-rich immune mol 99.4 2.6E-13 8.8E-18 117.3 8.3 129 62-214 120-250 (487)
46 3rfs_A Internalin B, repeat mo 99.4 3.8E-13 1.3E-17 107.5 8.7 128 61-213 62-193 (272)
47 3o53_A Protein LRIM1, AGAP0063 99.4 3.2E-13 1.1E-17 110.3 8.3 113 88-214 136-250 (317)
48 2z7x_B TOLL-like receptor 1, v 99.4 3.5E-13 1.2E-17 116.8 9.0 102 96-212 21-126 (520)
49 3rgz_A Protein brassinosteroid 99.4 1.6E-13 5.5E-18 124.6 7.1 115 89-213 435-550 (768)
50 3rgz_A Protein brassinosteroid 99.4 2.5E-13 8.7E-18 123.3 8.2 133 62-214 394-527 (768)
51 2o6r_A Variable lymphocyte rec 99.4 4.3E-13 1.5E-17 100.4 8.0 106 95-213 27-136 (177)
52 2xwt_C Thyrotropin receptor; s 99.4 2.2E-13 7.4E-18 106.8 6.5 132 60-213 29-168 (239)
53 3j0a_A TOLL-like receptor 5; m 99.4 5E-13 1.7E-17 122.6 9.5 134 59-213 21-160 (844)
54 4b8c_D Glucose-repressible alc 99.4 3.1E-13 1.1E-17 122.1 8.0 131 62-213 173-305 (727)
55 2z66_A Variable lymphocyte rec 99.4 2.6E-13 9E-18 110.0 6.7 134 59-213 25-162 (306)
56 3t6q_A CD180 antigen; protein- 99.4 4E-13 1.4E-17 118.5 8.2 133 58-213 29-165 (606)
57 2z66_A Variable lymphocyte rec 99.4 3.6E-13 1.2E-17 109.1 7.3 109 91-212 121-234 (306)
58 2id5_A Lingo-1, leucine rich r 99.4 4E-13 1.4E-17 115.3 7.9 132 59-212 29-163 (477)
59 1a9n_A U2A', U2A'; complex (nu 99.4 3.8E-13 1.3E-17 100.7 6.6 109 90-214 13-126 (176)
60 1h6t_A Internalin B; cell adhe 99.4 9E-13 3.1E-17 106.5 9.1 120 62-211 68-188 (291)
61 3o6n_A APL1; leucine-rich repe 99.4 4.4E-13 1.5E-17 112.3 7.4 129 61-213 44-177 (390)
62 1dce_A Protein (RAB geranylger 99.4 4.2E-13 1.4E-17 118.0 7.5 101 97-213 442-545 (567)
63 2je0_A Acidic leucine-rich nuc 99.4 1.9E-13 6.5E-18 99.4 4.4 107 94-213 15-125 (149)
64 1h6u_A Internalin H; cell adhe 99.4 1.1E-12 3.7E-17 106.9 9.2 102 92-211 81-183 (308)
65 2ell_A Acidic leucine-rich nuc 99.4 3.5E-13 1.2E-17 100.0 5.1 109 93-213 21-132 (168)
66 1xeu_A Internalin C; cellular 99.4 1.2E-12 4E-17 104.4 8.3 121 62-213 41-162 (263)
67 1h6u_A Internalin H; cell adhe 99.4 1.1E-12 3.8E-17 106.8 8.2 123 61-213 40-163 (308)
68 4g8a_A TOLL-like receptor 4; l 99.4 6E-13 2E-17 117.3 7.1 112 87-213 45-160 (635)
69 2z80_A TOLL-like receptor 2, v 99.4 1E-12 3.4E-17 108.7 7.7 133 59-213 49-186 (353)
70 1dce_A Protein (RAB geranylger 99.4 3.4E-13 1.2E-17 118.6 4.9 120 62-208 441-567 (567)
71 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 4.1E-12 1.4E-16 111.3 11.8 133 60-213 351-509 (562)
72 4ecn_A Leucine-rich repeat pro 99.4 2.3E-13 8E-18 124.8 4.0 139 62-213 448-607 (876)
73 3o6n_A APL1; leucine-rich repe 99.4 8.4E-13 2.9E-17 110.6 7.0 108 91-213 243-351 (390)
74 1xku_A Decorin; proteoglycan, 99.4 2.7E-12 9.2E-17 105.1 9.6 118 91-213 140-275 (330)
75 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 1.1E-12 3.6E-17 115.1 7.6 102 96-212 52-157 (562)
76 2o6s_A Variable lymphocyte rec 99.3 1.9E-12 6.4E-17 99.3 7.9 106 95-213 27-136 (208)
77 2v70_A SLIT-2, SLIT homolog 2 99.3 1.5E-12 5.2E-17 101.0 7.3 113 86-213 24-141 (220)
78 3oja_B Anopheles plasmodium-re 99.3 1E-12 3.5E-17 116.1 7.0 128 62-213 51-183 (597)
79 4glp_A Monocyte differentiatio 99.3 4.1E-12 1.4E-16 103.3 9.7 109 93-214 194-307 (310)
80 1h6t_A Internalin B; cell adhe 99.3 3.8E-12 1.3E-16 102.8 9.2 123 61-213 89-212 (291)
81 3vq2_A TLR4, TOLL-like recepto 99.3 1.5E-12 5.1E-17 114.8 7.3 113 89-213 441-557 (606)
82 2xwt_C Thyrotropin receptor; s 99.3 1.2E-12 4.1E-17 102.5 5.8 109 91-213 100-217 (239)
83 1xku_A Decorin; proteoglycan, 99.3 3.3E-12 1.1E-16 104.6 8.5 129 59-212 49-182 (330)
84 1wwl_A Monocyte differentiatio 99.3 4E-12 1.4E-16 103.5 9.0 114 88-213 165-286 (312)
85 2r9u_A Variable lymphocyte rec 99.3 1.9E-12 6.4E-17 97.0 6.5 81 123-213 33-117 (174)
86 3oja_B Anopheles plasmodium-re 99.3 1.6E-12 5.6E-17 114.8 7.0 109 90-213 248-357 (597)
87 2xot_A Amphoterin-induced prot 99.3 1.3E-12 4.4E-17 108.7 5.7 131 60-213 62-201 (361)
88 2ft3_A Biglycan; proteoglycan, 99.3 3E-12 1E-16 105.0 7.1 108 89-212 71-183 (332)
89 2ft3_A Biglycan; proteoglycan, 99.3 3.6E-12 1.2E-16 104.5 7.6 123 63-213 34-159 (332)
90 4fmz_A Internalin; leucine ric 99.3 5.7E-12 1.9E-16 103.7 8.8 123 61-212 43-166 (347)
91 4glp_A Monocyte differentiatio 99.3 1.7E-12 5.7E-17 105.6 5.4 113 89-213 162-284 (310)
92 3zyj_A Leucine-rich repeat-con 99.3 4E-12 1.4E-16 108.2 7.8 38 174-212 251-290 (440)
93 2z81_A CD282 antigen, TOLL-lik 99.3 3.9E-12 1.3E-16 110.8 7.6 130 61-212 49-183 (549)
94 1m9s_A Internalin B; cell inva 99.3 4.5E-12 1.5E-16 112.3 7.7 105 91-213 104-209 (605)
95 3g39_A Variable lymphocyte rec 99.3 4.3E-12 1.5E-16 94.6 6.3 82 122-213 29-114 (170)
96 3zyi_A Leucine-rich repeat-con 99.3 6.2E-12 2.1E-16 107.4 8.1 61 119-188 192-253 (452)
97 2id5_A Lingo-1, leucine rich r 99.3 5.7E-12 1.9E-16 108.1 7.6 130 61-212 55-187 (477)
98 1xeu_A Internalin C; cellular 99.3 3.9E-12 1.3E-16 101.3 6.1 123 61-214 62-185 (263)
99 1m9s_A Internalin B; cell inva 99.3 7.8E-12 2.7E-16 110.7 8.6 123 61-213 64-187 (605)
100 2z63_A TOLL-like receptor 4, v 99.3 5.9E-12 2E-16 110.0 7.5 111 91-213 416-530 (570)
101 4fmz_A Internalin; leucine ric 99.3 9.6E-12 3.3E-16 102.3 8.4 106 92-213 239-345 (347)
102 2z62_A TOLL-like receptor 4, v 99.3 4.3E-12 1.5E-16 101.4 5.8 107 62-188 52-160 (276)
103 1ds9_A Outer arm dynein; leuci 99.3 3.4E-14 1.2E-18 108.4 -6.4 110 88-213 40-152 (198)
104 2ast_B S-phase kinase-associat 99.2 5.5E-12 1.9E-16 103.3 5.6 118 87-212 133-258 (336)
105 3t6q_A CD180 antigen; protein- 99.2 1.2E-11 4E-16 109.1 7.6 116 88-213 441-559 (606)
106 3j0a_A TOLL-like receptor 5; m 99.2 1.3E-11 4.4E-16 113.2 7.5 116 86-214 17-136 (844)
107 3bz5_A Internalin-J, INLJ; leu 99.2 2.2E-11 7.5E-16 104.4 8.1 118 61-212 41-159 (457)
108 1ziw_A TOLL-like receptor 3; i 99.2 3.4E-11 1.2E-15 107.6 8.9 111 89-212 473-595 (680)
109 2wfh_A SLIT homolog 2 protein 99.2 1.8E-11 6.3E-16 93.0 6.1 107 59-188 28-137 (193)
110 1w8a_A SLIT protein; signaling 99.2 1.7E-11 5.9E-16 93.0 5.7 108 59-188 26-137 (192)
111 3oja_A Leucine-rich immune mol 99.2 1.8E-11 6.2E-16 105.7 6.3 106 94-213 118-226 (487)
112 2r9u_A Variable lymphocyte rec 99.2 1.7E-11 5.9E-16 91.7 5.3 97 86-197 25-124 (174)
113 3o53_A Protein LRIM1, AGAP0063 99.2 2.1E-11 7.2E-16 99.5 6.0 106 94-213 118-226 (317)
114 2ca6_A RAN GTPase-activating p 99.2 1.4E-11 4.8E-16 103.0 4.6 117 90-213 181-315 (386)
115 3cvr_A Invasion plasmid antige 99.2 5.1E-11 1.7E-15 104.7 8.1 79 121-214 158-243 (571)
116 2ast_B S-phase kinase-associat 99.2 1.3E-11 4.4E-16 101.0 3.8 111 93-211 90-205 (336)
117 3bz5_A Internalin-J, INLJ; leu 99.1 4.1E-11 1.4E-15 102.7 6.4 104 89-213 35-139 (457)
118 1o6v_A Internalin A; bacterial 99.1 1.1E-10 3.8E-15 100.0 8.7 81 119-212 283-364 (466)
119 2o6r_A Variable lymphocyte rec 99.1 5.3E-11 1.8E-15 88.9 5.5 109 59-189 25-136 (177)
120 1ds9_A Outer arm dynein; leuci 99.1 1.6E-12 5.6E-17 99.0 -2.9 103 97-213 24-127 (198)
121 1o6v_A Internalin A; bacterial 99.1 2.8E-10 9.7E-15 97.4 10.3 80 120-212 262-342 (466)
122 2ifg_A High affinity nerve gro 99.1 1.2E-10 4.1E-15 95.9 7.3 90 113-213 22-115 (347)
123 2ca6_A RAN GTPase-activating p 99.1 6.4E-11 2.2E-15 99.0 5.4 111 96-213 159-286 (386)
124 3g39_A Variable lymphocyte rec 99.1 6.7E-11 2.3E-15 88.0 4.7 93 86-193 22-117 (170)
125 4ay9_X Follicle-stimulating ho 99.1 2.1E-10 7.2E-15 94.8 7.7 141 59-213 27-214 (350)
126 1jl5_A Outer protein YOPM; leu 99.1 2.9E-10 9.8E-15 97.4 8.5 101 91-213 148-249 (454)
127 3g06_A SSPH2 (leucine-rich rep 99.1 2.1E-10 7.1E-15 101.9 7.6 76 123-214 221-297 (622)
128 1jl5_A Outer protein YOPM; leu 99.0 5.6E-10 1.9E-14 95.6 8.7 119 59-213 88-207 (454)
129 3cvr_A Invasion plasmid antige 99.0 3.2E-10 1.1E-14 99.7 7.0 70 124-212 121-191 (571)
130 3g06_A SSPH2 (leucine-rich rep 99.0 7.5E-10 2.6E-14 98.3 7.3 98 61-195 60-158 (622)
131 1z7x_W Ribonuclease inhibitor; 98.9 2.1E-09 7.1E-14 91.5 7.0 134 62-213 28-182 (461)
132 3goz_A Leucine-rich repeat-con 98.9 9.7E-10 3.3E-14 91.2 4.7 111 96-213 80-208 (362)
133 1z7x_W Ribonuclease inhibitor; 98.9 1.6E-09 5.6E-14 92.1 4.9 119 88-213 162-296 (461)
134 3goz_A Leucine-rich repeat-con 98.8 9.5E-10 3.3E-14 91.2 2.9 137 62-213 80-237 (362)
135 2ifg_A High affinity nerve gro 98.8 3E-09 1E-13 87.5 5.5 90 86-188 22-114 (347)
136 4ay9_X Follicle-stimulating ho 98.7 2.6E-08 9E-13 82.1 7.9 77 124-212 155-234 (350)
137 3un9_A NLR family member X1; l 98.7 8.6E-09 3E-13 86.0 3.6 111 96-213 126-251 (372)
138 2p1m_B Transport inhibitor res 98.6 3.8E-08 1.3E-12 86.2 4.6 137 62-211 105-245 (594)
139 3ogk_B Coronatine-insensitive 98.5 9.5E-08 3.3E-12 83.7 6.2 21 114-134 211-231 (592)
140 3ogk_B Coronatine-insensitive 98.5 2.9E-08 9.8E-13 87.0 2.5 104 98-209 140-251 (592)
141 1io0_A Tropomodulin; LRR prote 98.5 8.9E-08 3E-12 72.0 4.8 126 86-213 26-163 (185)
142 3un9_A NLR family member X1; l 98.4 6.2E-08 2.1E-12 80.8 2.1 141 58-213 68-223 (372)
143 3rw6_A Nuclear RNA export fact 98.3 2.1E-07 7.1E-12 74.0 2.8 81 119-209 166-259 (267)
144 2p1m_B Transport inhibitor res 98.2 3.5E-07 1.2E-11 80.1 2.8 112 94-211 182-324 (594)
145 2ra8_A Uncharacterized protein 98.2 2.3E-06 7.8E-11 71.1 7.3 113 95-213 192-319 (362)
146 3e4g_A ATP synthase subunit S, 98.2 1E-06 3.4E-11 65.6 4.5 87 96-191 61-153 (176)
147 1io0_A Tropomodulin; LRR prote 98.0 4.1E-06 1.4E-10 62.8 4.2 101 111-213 24-135 (185)
148 3rw6_A Nuclear RNA export fact 97.9 5.8E-06 2E-10 65.7 3.5 81 93-183 167-257 (267)
149 2a5y_B CED-4; apoptosis; HET: 97.9 2.8E-06 9.4E-11 74.3 1.3 46 8-56 427-473 (549)
150 3sb4_A Hypothetical leucine ri 97.9 2.3E-05 7.9E-10 63.8 6.4 78 122-211 225-307 (329)
151 2ra8_A Uncharacterized protein 97.7 4.8E-05 1.6E-09 63.1 6.2 145 5-164 46-205 (362)
152 3sb4_A Hypothetical leucine ri 97.7 0.00018 6.3E-09 58.4 9.4 99 95-208 225-328 (329)
153 3e4g_A ATP synthase subunit S, 97.6 1.4E-05 4.8E-10 59.4 0.9 86 123-216 61-154 (176)
154 4fdw_A Leucine rich hypothetic 96.5 0.0055 1.9E-07 51.3 7.1 18 117-134 265-282 (401)
155 3rfe_A Platelet glycoprotein I 96.5 0.0048 1.7E-07 43.2 5.7 51 127-188 12-66 (130)
156 3sfz_A APAF-1, apoptotic pepti 96.3 0.0038 1.3E-07 59.0 5.1 43 9-53 408-450 (1249)
157 3rfe_A Platelet glycoprotein I 96.1 0.0085 2.9E-07 41.9 5.2 36 124-165 32-68 (130)
158 4fdw_A Leucine rich hypothetic 96.0 0.016 5.4E-07 48.5 7.0 36 117-159 294-330 (401)
159 1pgv_A TMD-1, tropomodulin TMD 95.5 0.016 5.6E-07 43.5 4.6 119 88-212 33-168 (197)
160 1pgv_A TMD-1, tropomodulin TMD 94.5 0.027 9.4E-07 42.3 3.4 99 112-212 30-137 (197)
161 4gt6_A Cell surface protein; l 94.4 0.13 4.6E-06 42.4 7.8 106 90-212 259-368 (394)
162 1vt4_I APAF-1 related killer D 94.3 0.022 7.7E-07 53.3 2.9 37 9-49 401-437 (1221)
163 1z6t_A APAF-1, apoptotic prote 94.2 0.05 1.7E-06 47.5 5.1 41 9-51 408-448 (591)
164 4h09_A Hypothetical leucine ri 93.3 0.14 4.8E-06 41.8 5.9 104 92-211 236-343 (379)
165 4fs7_A Uncharacterized protein 92.8 0.1 3.4E-06 43.1 4.3 103 90-211 270-376 (394)
166 4gt6_A Cell surface protein; l 91.3 0.19 6.5E-06 41.4 4.3 105 90-212 282-389 (394)
167 4fs7_A Uncharacterized protein 90.5 0.48 1.6E-05 39.0 6.1 98 91-205 292-392 (394)
168 4h09_A Hypothetical leucine ri 86.7 1.9 6.5E-05 35.0 7.2 103 93-211 214-320 (379)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.62 E-value=1e-15 Score=125.87 Aligned_cols=109 Identities=20% Similarity=0.216 Sum_probs=77.7
Q ss_pred CCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccccccccc
Q 043351 95 EKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTI 174 (218)
Q Consensus 95 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i 174 (218)
+++|+.|.+.++.. ..+|..+..+++|++|++++|. +..+|+.++.+++|++|++++|.+ .+.+|..+
T Consensus 182 l~~L~~L~L~~n~l----~~lp~~l~~l~~L~~L~L~~N~------l~~l~~~l~~l~~L~~L~Ls~n~~--~~~~p~~~ 249 (328)
T 4fcg_A 182 LVNLQSLRLEWTGI----RSLPASIANLQNLKSLKIRNSP------LSALGPAIHHLPKLEELDLRGCTA--LRNYPPIF 249 (328)
T ss_dssp STTCCEEEEEEECC----CCCCGGGGGCTTCCEEEEESSC------CCCCCGGGGGCTTCCEEECTTCTT--CCBCCCCT
T ss_pred CCCCCEEECcCCCc----CcchHhhcCCCCCCEEEccCCC------CCcCchhhccCCCCCEEECcCCcc--hhhhHHHh
Confidence 55555555555322 2455567777778888887777 667777777788888888887774 33377777
Q ss_pred cCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCccc
Q 043351 175 IMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHILE 215 (218)
Q Consensus 175 ~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l~ 215 (218)
+.+. |+.|++++|+.++.+|..++++++|++|++++|..+.
T Consensus 250 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence 7787 8888888877777788778888888888888877554
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.62 E-value=4.3e-16 Score=128.20 Aligned_cols=135 Identities=17% Similarity=0.186 Sum_probs=75.7
Q ss_pred CceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcc----
Q 043351 62 EKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFES---- 137 (218)
Q Consensus 62 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~---- 137 (218)
.+.++|.+..+.. ..+|..+..+++|++|.+.++.. ..+|..+..+++|++|++++|....
T Consensus 104 ~~L~~L~L~~n~l-----------~~lp~~~~~l~~L~~L~Ls~n~l----~~lp~~l~~l~~L~~L~L~~n~~~~~~p~ 168 (328)
T 4fcg_A 104 SHLQHMTIDAAGL-----------MELPDTMQQFAGLETLTLARNPL----RALPASIASLNRLRELSIRACPELTELPE 168 (328)
T ss_dssp TTCSEEEEESSCC-----------CCCCSCGGGGTTCSEEEEESCCC----CCCCGGGGGCTTCCEEEEEEETTCCCCCS
T ss_pred CCCCEEECCCCCc-----------cchhHHHhccCCCCEEECCCCcc----ccCcHHHhcCcCCCEEECCCCCCccccCh
Confidence 4677788777665 33455566666666666666432 2334445555566666665544300
Q ss_pred -----------------------cccccccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCC
Q 043351 138 -----------------------NNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKML 193 (218)
Q Consensus 138 -----------------------~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~l 193 (218)
.|.+..+|..++.+++|++|++++|.+.. +|..++.++ |+.|++++|+....+
T Consensus 169 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~---l~~~l~~l~~L~~L~Ls~n~~~~~~ 245 (328)
T 4fcg_A 169 PLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA---LGPAIHHLPKLEELDLRGCTALRNY 245 (328)
T ss_dssp CSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC---CCGGGGGCTTCCEEECTTCTTCCBC
T ss_pred hHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc---CchhhccCCCCCEEECcCCcchhhh
Confidence 00044555555555566666666665555 555555555 666666665555555
Q ss_pred chhhcCCCCCcEEeccCCCcc
Q 043351 194 PYYLLQTTKLQELKIYLCHIL 214 (218)
Q Consensus 194 P~~i~~L~~L~~L~l~~~~~l 214 (218)
|..++.+++|+.|++++|...
T Consensus 246 p~~~~~l~~L~~L~L~~n~~~ 266 (328)
T 4fcg_A 246 PPIFGGRAPLKRLILKDCSNL 266 (328)
T ss_dssp CCCTTCCCCCCEEECTTCTTC
T ss_pred HHHhcCCCCCCEEECCCCCch
Confidence 655666666666666665543
No 3
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.61 E-value=1.8e-15 Score=118.30 Aligned_cols=133 Identities=16% Similarity=0.102 Sum_probs=113.3
Q ss_pred cccCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcc
Q 043351 58 SSFDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFES 137 (218)
Q Consensus 58 ~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~ 137 (218)
..++..++.|.+..+... ...+..+..+++|+.|.+.++.. ....+..|..+++|++|+|++|.
T Consensus 36 ~~~~~~L~~L~Ls~n~i~----------~~~~~~~~~l~~L~~L~L~~N~l---~~i~~~~~~~l~~L~~L~Ls~N~--- 99 (229)
T 3e6j_A 36 AGIPTNAQILYLHDNQIT----------KLEPGVFDSLINLKELYLGSNQL---GALPVGVFDSLTQLTVLDLGTNQ--- 99 (229)
T ss_dssp SCCCTTCSEEECCSSCCC----------CCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSC---
T ss_pred CCCCCCCCEEEcCCCccC----------ccCHHHhhCccCCcEEECCCCCC---CCcChhhcccCCCcCEEECCCCc---
Confidence 345678999999988874 44567788999999999998743 33444567899999999999999
Q ss_pred cccccccCcc-cCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCch-hhcCCCCCcEEeccCCCc
Q 043351 138 NNLIKEIPPN-VGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPY-YLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 138 ~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~ 213 (218)
+..+|.. ++.+++|++|++++|.+.. +|..+..+. |++|++++|. +..+|. .+..+++|+.|++++|+.
T Consensus 100 ---l~~l~~~~~~~l~~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 100 ---LTVLPSAVFDRLVHLKELFMCCNKLTE---LPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp ---CCCCCTTTTTTCTTCCEEECCSSCCCS---CCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred ---CCccChhHhCcchhhCeEeccCCcccc---cCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCc
Confidence 8888765 6899999999999999998 999999999 9999999998 888875 478999999999999984
No 4
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.59 E-value=3.6e-15 Score=115.89 Aligned_cols=132 Identities=17% Similarity=0.143 Sum_probs=111.3
Q ss_pred ccCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccc
Q 043351 59 SFDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESN 138 (218)
Q Consensus 59 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~ 138 (218)
.++..++.|.+..+... ...+..+..+++|+.|.+.++.. ....|..|..+++|++|+|++|.
T Consensus 29 ~l~~~l~~L~l~~n~i~----------~i~~~~~~~l~~L~~L~Ls~N~i---~~~~~~~~~~l~~L~~L~Ls~N~---- 91 (220)
T 2v9t_B 29 NLPETITEIRLEQNTIK----------VIPPGAFSPYKKLRRIDLSNNQI---SELAPDAFQGLRSLNSLVLYGNK---- 91 (220)
T ss_dssp SCCTTCCEEECCSSCCC----------EECTTSSTTCTTCCEEECCSSCC---CEECTTTTTTCSSCCEEECCSSC----
T ss_pred ccCcCCCEEECCCCcCC----------CcCHhHhhCCCCCCEEECCCCcC---CCcCHHHhhCCcCCCEEECCCCc----
Confidence 45668899999988774 33345788999999999998743 44557789999999999999999
Q ss_pred ccccccCcc-cCCCCCCCeEeccCCCccccccc-cccccCce-ecEEeecCCCCCCCCch-hhcCCCCCcEEeccCCCc
Q 043351 139 NLIKEIPPN-VGKLVHLRYLNLSDKFIETTGVF-VNTIIMPC-LSSFQIESCPKLKMLPY-YLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 139 ~~l~~lp~~-i~~L~~L~~L~l~~~~l~~~~~l-p~~i~~L~-L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~ 213 (218)
+..+|.. +..+++|++|++++|.+.. + |..+..+. |+.|++++|. ++.+|. .+..+++|+.|++++|+.
T Consensus 92 --l~~l~~~~f~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 92 --ITELPKSLFEGLFSLQLLLLNANKINC---LRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp --CCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred --CCccCHhHccCCCCCCEEECCCCCCCE---eCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence 8889876 5889999999999999966 6 56788999 9999999998 777775 478999999999999984
No 5
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=1.8e-15 Score=112.39 Aligned_cols=133 Identities=16% Similarity=0.069 Sum_probs=112.0
Q ss_pred cccCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcc
Q 043351 58 SSFDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFES 137 (218)
Q Consensus 58 ~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~ 137 (218)
...+.+++++.+..+.... +.+|..+..+++|+.|.+.++.. ... ..+..+++|++|++++|.
T Consensus 20 ~~~~~~L~~L~l~~n~l~~---------~~i~~~~~~l~~L~~L~l~~n~l----~~~-~~~~~l~~L~~L~Ls~N~--- 82 (168)
T 2ell_A 20 NRTPAAVRELVLDNCKSND---------GKIEGLTAEFVNLEFLSLINVGL----ISV-SNLPKLPKLKKLELSENR--- 82 (168)
T ss_dssp TSCTTSCSEEECCSCBCBT---------TBCSSCCGGGGGCCEEEEESSCC----CCC-SSCCCCSSCCEEEEESCC---
T ss_pred cCCcccCCEEECCCCCCCh---------hhHHHHHHhCCCCCEEeCcCCCC----CCh-hhhccCCCCCEEECcCCc---
Confidence 3567889999999887620 25677788999999999998754 222 557899999999999999
Q ss_pred cccccc-cCcccCCCCCCCeEeccCCCcccccccc--ccccCce-ecEEeecCCCCCCCCch----hhcCCCCCcEEecc
Q 043351 138 NNLIKE-IPPNVGKLVHLRYLNLSDKFIETTGVFV--NTIIMPC-LSSFQIESCPKLKMLPY----YLLQTTKLQELKIY 209 (218)
Q Consensus 138 ~~~l~~-lp~~i~~L~~L~~L~l~~~~l~~~~~lp--~~i~~L~-L~~L~l~~~~~l~~lP~----~i~~L~~L~~L~l~ 209 (218)
+.. +|..++.+++|++|++++|.+.. +| ..++.++ |+.|++++|+ +..+|. .+..+++|++|+++
T Consensus 83 ---l~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 83 ---IFGGLDMLAEKLPNLTHLNLSGNKLKD---ISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp ---CCSCCCHHHHHCTTCCEEECBSSSCCS---SGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTE
T ss_pred ---CchHHHHHHhhCCCCCEEeccCCccCc---chhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCC
Confidence 666 77777789999999999999988 87 7889999 9999999998 888886 78999999999999
Q ss_pred CCCcc
Q 043351 210 LCHIL 214 (218)
Q Consensus 210 ~~~~l 214 (218)
+|...
T Consensus 156 ~n~~~ 160 (168)
T 2ell_A 156 DREDQ 160 (168)
T ss_dssp ETTSC
T ss_pred CCChh
Confidence 99853
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.56 E-value=3.6e-15 Score=121.84 Aligned_cols=131 Identities=15% Similarity=0.114 Sum_probs=109.1
Q ss_pred CceeEEEEeeeccchhhhhhhhhhh--hhhccccCCCCeeEEEecc-ccccchhhhHHHHHhcCCCCcEEEecCCCCccc
Q 043351 62 EKIKRLHISCKMYDTVHEFSQHLSE--ELFISSFDEKVCHSILTLS-FISVNSRNLLQELFGELTCLRALCISNNSFESN 138 (218)
Q Consensus 62 ~~~r~l~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~ 138 (218)
.+++++.+..+... + .+|..+..+++|++|.+.+ + ......|..|..+++|++|++++|.
T Consensus 50 ~~l~~L~L~~~~l~----------~~~~~~~~l~~l~~L~~L~L~~~n---~l~~~~p~~l~~l~~L~~L~Ls~n~---- 112 (313)
T 1ogq_A 50 YRVNNLDLSGLNLP----------KPYPIPSSLANLPYLNFLYIGGIN---NLVGPIPPAIAKLTQLHYLYITHTN---- 112 (313)
T ss_dssp CCEEEEEEECCCCS----------SCEECCGGGGGCTTCSEEEEEEET---TEESCCCGGGGGCTTCSEEEEEEEC----
T ss_pred ceEEEEECCCCCcc----------CCcccChhHhCCCCCCeeeCCCCC---cccccCChhHhcCCCCCEEECcCCe----
Confidence 67999999988774 3 5788899999999999984 4 2345667778999999999999999
Q ss_pred cccc-ccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCchhhcCCC-CCcEEeccCCCc
Q 043351 139 NLIK-EIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTT-KLQELKIYLCHI 213 (218)
Q Consensus 139 ~~l~-~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~-~L~~L~l~~~~~ 213 (218)
+. .+|..++++++|++|++++|.+. +.+|..++.++ |++|++++|.....+|..++.++ +|++|++++|.+
T Consensus 113 --l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 113 --VSGAIPDFLSQIKTLVTLDFSYNALS--GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp --CEEECCGGGGGCTTCCEEECCSSEEE--SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred --eCCcCCHHHhCCCCCCEEeCCCCccC--CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 55 78888999999999999999984 34899999999 99999999883348898998888 899999999874
No 7
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.56 E-value=5.6e-15 Score=114.83 Aligned_cols=132 Identities=10% Similarity=0.049 Sum_probs=108.5
Q ss_pred ccCCceeEEEEeeeccchhhhhhhhhhhhhh-ccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcc
Q 043351 59 SFDEKIKRLHISCKMYDTVHEFSQHLSEELF-ISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFES 137 (218)
Q Consensus 59 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~ 137 (218)
.++..++.|.+..+... ...+ ..+..+++|+.|.+.++.. ....+..|..+++|++|+|++|.
T Consensus 29 ~~~~~~~~L~L~~N~l~----------~~~~~~~~~~l~~L~~L~L~~N~i---~~i~~~~~~~l~~L~~L~Ls~N~--- 92 (220)
T 2v70_A 29 HIPQYTAELRLNNNEFT----------VLEATGIFKKLPQLRKINFSNNKI---TDIEEGAFEGASGVNEILLTSNR--- 92 (220)
T ss_dssp CCCTTCSEEECCSSCCC----------EECCCCCGGGCTTCCEEECCSSCC---CEECTTTTTTCTTCCEEECCSSC---
T ss_pred CCCCCCCEEEcCCCcCC----------ccCchhhhccCCCCCEEECCCCcC---CEECHHHhCCCCCCCEEECCCCc---
Confidence 34566788888888773 2212 3478899999999998643 34445578999999999999999
Q ss_pred cccccccCc-ccCCCCCCCeEeccCCCccccccc-cccccCce-ecEEeecCCCCCCCC-chhhcCCCCCcEEeccCCCc
Q 043351 138 NNLIKEIPP-NVGKLVHLRYLNLSDKFIETTGVF-VNTIIMPC-LSSFQIESCPKLKML-PYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 138 ~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~~~~l-p~~i~~L~-L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~ 213 (218)
+..+|. .++.+++|++|++++|.+.. + |..+..+. |+.|++++|. ++.+ |..+..+++|+.|++++|+.
T Consensus 93 ---l~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 93 ---LENVQHKMFKGLESLKTLMLRSNRITC---VGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp ---CCCCCGGGGTTCSSCCEEECTTSCCCC---BCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred ---cCccCHhHhcCCcCCCEEECCCCcCCe---ECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCC
Confidence 777765 48999999999999999966 6 77889999 9999999998 6666 77889999999999999984
No 8
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.55 E-value=1.3e-14 Score=111.39 Aligned_cols=133 Identities=17% Similarity=0.124 Sum_probs=109.0
Q ss_pred ccCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccc
Q 043351 59 SFDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESN 138 (218)
Q Consensus 59 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~ 138 (218)
..+.+++++.+..+... ...+..+..+++|+.|.+.++.. ....+..|..+++|++|++++|.
T Consensus 25 ~~~~~l~~L~l~~n~l~----------~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~Ls~n~---- 87 (208)
T 2o6s_A 25 GIPAQTTYLDLETNSLK----------SLPNGVFDELTSLTQLYLGGNKL---QSLPNGVFNKLTSLTYLNLSTNQ---- 87 (208)
T ss_dssp CCCTTCSEEECCSSCCC----------CCCTTTTTTCTTCSEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSC----
T ss_pred CCCCCCcEEEcCCCccC----------cCChhhhcccccCcEEECCCCcc---CccChhhcCCCCCcCEEECCCCc----
Confidence 45668899999988774 22344578899999999998643 34445567889999999999999
Q ss_pred ccccccCcc-cCCCCCCCeEeccCCCcccccccccc-ccCce-ecEEeecCCCCCCCCchh-hcCCCCCcEEeccCCCcc
Q 043351 139 NLIKEIPPN-VGKLVHLRYLNLSDKFIETTGVFVNT-IIMPC-LSSFQIESCPKLKMLPYY-LLQTTKLQELKIYLCHIL 214 (218)
Q Consensus 139 ~~l~~lp~~-i~~L~~L~~L~l~~~~l~~~~~lp~~-i~~L~-L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~l 214 (218)
+..+|.. ++.+++|++|++++|.+.. +|.. ++.+. |++|++++|. +..+|.. +..+++|++|++++|+..
T Consensus 88 --l~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 88 --LQSLPNGVFDKLTQLKELALNTNQLQS---LPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp --CCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred --CCccCHhHhcCccCCCEEEcCCCcCcc---cCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee
Confidence 8888765 6899999999999999987 8765 68899 9999999998 7777765 688999999999999753
No 9
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.55 E-value=1.1e-14 Score=115.17 Aligned_cols=109 Identities=18% Similarity=0.236 Sum_probs=58.3
Q ss_pred ccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcc-cCCCCCCCeEeccCCCccccccc
Q 043351 92 SFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPN-VGKLVHLRYLNLSDKFIETTGVF 170 (218)
Q Consensus 92 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~~~~l 170 (218)
+..+++|+.|.+.++.. ....+..|..+++|++|++++|. +..+|.. ++.+++|++|++++|.+.. +
T Consensus 79 ~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~N~------l~~~~~~~~~~l~~L~~L~Ls~N~l~~---~ 146 (251)
T 3m19_A 79 FDDLTELGTLGLANNQL---ASLPLGVFDHLTQLDKLYLGGNQ------LKSLPSGVFDRLTKLKELRLNTNQLQS---I 146 (251)
T ss_dssp TTTCTTCCEEECTTSCC---CCCCTTTTTTCTTCCEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSCCCC---C
T ss_pred hccCCcCCEEECCCCcc---cccChhHhcccCCCCEEEcCCCc------CCCcChhHhccCCcccEEECcCCcCCc---c
Confidence 44444455554444321 22223334455555555555555 5555443 3556666666666666655 5
Q ss_pred cc-cccCce-ecEEeecCCCCCCCCch-hhcCCCCCcEEeccCCCc
Q 043351 171 VN-TIIMPC-LSSFQIESCPKLKMLPY-YLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 171 p~-~i~~L~-L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~ 213 (218)
|. .++.+. |++|++++|. +..+|. .+..+++|++|++++|++
T Consensus 147 ~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 147 PAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCce
Confidence 44 455666 6666666665 445443 455666666666666653
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.54 E-value=1.3e-14 Score=128.00 Aligned_cols=133 Identities=15% Similarity=0.121 Sum_probs=114.2
Q ss_pred cccCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcc
Q 043351 58 SSFDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFES 137 (218)
Q Consensus 58 ~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~ 137 (218)
..++.+++++.+..+... ...+..+.++++|++|.+.++. .....|..|..+++|++|++++|.
T Consensus 28 ~~~~~~l~~L~Ls~n~l~----------~~~~~~~~~l~~L~~L~Ls~n~---l~~i~~~~~~~l~~L~~L~Ls~n~--- 91 (606)
T 3vq2_A 28 DDIPSSTKNIDLSFNPLK----------ILKSYSFSNFSELQWLDLSRCE---IETIEDKAWHGLHHLSNLILTGNP--- 91 (606)
T ss_dssp TTSCTTCCEEECTTSCCC----------EECTTTTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTCC---
T ss_pred CCCCCCcCEEECCCCCcC----------EeChhhccCCccCcEEeCCCCc---ccccCHHHhhchhhcCEeECCCCc---
Confidence 346778999999988774 3345588999999999999863 345557778999999999999999
Q ss_pred ccccccc-CcccCCCCCCCeEeccCCCcccccccc-ccccCce-ecEEeecCCCCCC--CCchhhcCCCCCcEEeccCCC
Q 043351 138 NNLIKEI-PPNVGKLVHLRYLNLSDKFIETTGVFV-NTIIMPC-LSSFQIESCPKLK--MLPYYLLQTTKLQELKIYLCH 212 (218)
Q Consensus 138 ~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~~~~lp-~~i~~L~-L~~L~l~~~~~l~--~lP~~i~~L~~L~~L~l~~~~ 212 (218)
+..+ |..++++++|++|++++|.+.. +| ..++++. |++|++++|. +. .+|..++++++|++|++++|.
T Consensus 92 ---l~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 92 ---IQSFSPGSFSGLTSLENLVAVETKLAS---LESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp ---CCCCCTTSSTTCTTCCEEECTTSCCCC---SSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred ---ccccChhhcCCcccCCEEEccCCcccc---ccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCc
Confidence 7776 7889999999999999999977 76 7899999 9999999998 55 589999999999999999997
Q ss_pred c
Q 043351 213 I 213 (218)
Q Consensus 213 ~ 213 (218)
+
T Consensus 165 l 165 (606)
T 3vq2_A 165 I 165 (606)
T ss_dssp C
T ss_pred c
Confidence 4
No 11
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=2.1e-14 Score=113.53 Aligned_cols=133 Identities=17% Similarity=0.159 Sum_probs=112.0
Q ss_pred cccCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcc
Q 043351 58 SSFDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFES 137 (218)
Q Consensus 58 ~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~ 137 (218)
..++..++.|.+..+... ...+..+..+++|+.|.+.++.. ....+..|..+++|++|++++|.
T Consensus 31 ~~~~~~l~~L~L~~n~l~----------~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~--- 94 (251)
T 3m19_A 31 SGIPADTEKLDLQSTGLA----------TLSDATFRGLTKLTWLNLDYNQL---QTLSAGVFDDLTELGTLGLANNQ--- 94 (251)
T ss_dssp SCCCTTCCEEECTTSCCC----------CCCTTTTTTCTTCCEEECTTSCC---CCCCTTTTTTCTTCCEEECTTSC---
T ss_pred CCCCCCCCEEEccCCCcC----------ccCHhHhcCcccCCEEECCCCcC---CccCHhHhccCCcCCEEECCCCc---
Confidence 345678999999988774 44456788999999999998743 44556668899999999999999
Q ss_pred cccccccC-cccCCCCCCCeEeccCCCcccccccccc-ccCce-ecEEeecCCCCCCCCch-hhcCCCCCcEEeccCCCc
Q 043351 138 NNLIKEIP-PNVGKLVHLRYLNLSDKFIETTGVFVNT-IIMPC-LSSFQIESCPKLKMLPY-YLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 138 ~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~~~~lp~~-i~~L~-L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~ 213 (218)
+..+| ..++.+++|++|++++|.+.. +|.. ++.+. |+.|++++|. ++.+|. .++.+++|++|++++|.+
T Consensus 95 ---l~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 95 ---LASLPLGVFDHLTQLDKLYLGGNQLKS---LPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp ---CCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ---ccccChhHhcccCCCCEEEcCCCcCCC---cChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcC
Confidence 77777 456899999999999999988 8776 58899 9999999998 888886 589999999999999974
No 12
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.53 E-value=1.5e-14 Score=127.58 Aligned_cols=133 Identities=17% Similarity=0.166 Sum_probs=112.7
Q ss_pred cccCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcc
Q 043351 58 SSFDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFES 137 (218)
Q Consensus 58 ~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~ 137 (218)
..+|..+++|.+..+... ...+..|..+++|++|+++++. .....|..|..+++|++|+|++|.
T Consensus 48 ~~lp~~~~~LdLs~N~i~----------~l~~~~f~~l~~L~~L~Ls~N~---i~~i~~~~f~~L~~L~~L~Ls~N~--- 111 (635)
T 4g8a_A 48 DNLPFSTKNLDLSFNPLR----------HLGSYSFFSFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTGNP--- 111 (635)
T ss_dssp SSSCTTCCEEECTTSCCC----------EECTTTTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTCC---
T ss_pred CCCCcCCCEEEeeCCCCC----------CCCHHHHhCCCCCCEEECCCCc---CCCcChhHhcCCCCCCEEEccCCc---
Confidence 456778999999988874 3335679999999999999863 344556679999999999999999
Q ss_pred cccccccCc-ccCCCCCCCeEeccCCCccccccccc-cccCce-ecEEeecCCCCCC--CCchhhcCCCCCcEEeccCCC
Q 043351 138 NNLIKEIPP-NVGKLVHLRYLNLSDKFIETTGVFVN-TIIMPC-LSSFQIESCPKLK--MLPYYLLQTTKLQELKIYLCH 212 (218)
Q Consensus 138 ~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~~~~lp~-~i~~L~-L~~L~l~~~~~l~--~lP~~i~~L~~L~~L~l~~~~ 212 (218)
+..+|. .++++++|++|++++|.+.. +|+ .+++++ |++|++++|. +. .+|..++.+++|++|++++|.
T Consensus 112 ---l~~l~~~~f~~L~~L~~L~Ls~N~l~~---l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 112 ---IQSLALGAFSGLSSLQKLVAVETNLAS---LENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp ---CCEECGGGGTTCTTCCEEECTTSCCCC---STTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred ---CCCCCHHHhcCCCCCCEEECCCCcCCC---CChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCcc
Confidence 888885 57999999999999999988 875 589999 9999999998 54 467888999999999999997
Q ss_pred c
Q 043351 213 I 213 (218)
Q Consensus 213 ~ 213 (218)
+
T Consensus 185 l 185 (635)
T 4g8a_A 185 I 185 (635)
T ss_dssp C
T ss_pred c
Confidence 5
No 13
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.52 E-value=4.6e-15 Score=108.06 Aligned_cols=128 Identities=18% Similarity=0.135 Sum_probs=103.7
Q ss_pred ccCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccc
Q 043351 59 SFDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESN 138 (218)
Q Consensus 59 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~ 138 (218)
..+.+++++.+..+.... +.+|..+..+++|+.|.+.++.. ... ..+..+++|++|++++|.
T Consensus 14 ~~~~~l~~L~l~~n~l~~---------~~~~~~~~~l~~L~~L~l~~n~l---~~~--~~~~~l~~L~~L~Ls~n~---- 75 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNE---------GKLEGLTDEFEELEFLSTINVGL---TSI--ANLPKLNKLKKLELSDNR---- 75 (149)
T ss_dssp CCGGGCSEEECTTCBCBT---------TBCCSCCTTCTTCCEEECTTSCC---CCC--TTCCCCTTCCEEECCSSC----
T ss_pred CCCccCeEEEccCCcCCh---------hHHHHHHhhcCCCcEEECcCCCC---CCc--hhhhcCCCCCEEECCCCc----
Confidence 445778999998877620 25677788999999999998744 222 557889999999999999
Q ss_pred ccccc-cCcccCCCCCCCeEeccCCCcccccccc--ccccCce-ecEEeecCCCCCCCCch----hhcCCCCCcEEeccC
Q 043351 139 NLIKE-IPPNVGKLVHLRYLNLSDKFIETTGVFV--NTIIMPC-LSSFQIESCPKLKMLPY----YLLQTTKLQELKIYL 210 (218)
Q Consensus 139 ~~l~~-lp~~i~~L~~L~~L~l~~~~l~~~~~lp--~~i~~L~-L~~L~l~~~~~l~~lP~----~i~~L~~L~~L~l~~ 210 (218)
+.. +|..++.+++|++|++++|.+.. +| ..++.++ |++|++++|+ +..+|. .++.+++|++|++++
T Consensus 76 --i~~~~~~~~~~l~~L~~L~ls~N~i~~---~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 76 --VSGGLEVLAEKCPNLTHLNLSGNKIKD---LSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp --CCSCTHHHHHHCTTCCEEECTTSCCCS---HHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred --ccchHHHHhhhCCCCCEEECCCCcCCC---hHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 666 77777789999999999999977 65 7889999 9999999987 777775 678999999998864
No 14
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.52 E-value=7.5e-15 Score=132.65 Aligned_cols=113 Identities=19% Similarity=0.201 Sum_probs=97.1
Q ss_pred hhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCcccc
Q 043351 88 LFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETT 167 (218)
Q Consensus 88 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~ 167 (218)
.+..+..++.|+.|.+.++.. ..+|..+..+++|++|+|++|. +..+|..++.|++|++|+|++|.+..
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l----~~l~~~~~~l~~L~~L~Ls~N~------l~~lp~~~~~l~~L~~L~Ls~N~l~~- 284 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQI----FNISANIFKYDFLTRLYLNGNS------LTELPAEIKNLSNLRVLDLSHNRLTS- 284 (727)
T ss_dssp ------CCCCCCEEECTTSCC----SCCCGGGGGCCSCSCCBCTTSC------CSCCCGGGGGGTTCCEEECTTSCCSS-
T ss_pred ChhhhccCCCCcEEECCCCCC----CCCChhhcCCCCCCEEEeeCCc------CcccChhhhCCCCCCEEeCcCCcCCc-
Confidence 466788899999999998643 3455556689999999999999 88999999999999999999999988
Q ss_pred ccccccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCcc
Q 043351 168 GVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHIL 214 (218)
Q Consensus 168 ~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l 214 (218)
+|.+++.+. |++|+|++|. ++.+|..|++|++|++|++++|.+.
T Consensus 285 --lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 285 --LPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp --CCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred --cChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccC
Confidence 999999999 9999999997 8899999999999999999999853
No 15
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.51 E-value=5.1e-14 Score=107.36 Aligned_cols=125 Identities=14% Similarity=0.121 Sum_probs=73.8
Q ss_pred CceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccc
Q 043351 62 EKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLI 141 (218)
Q Consensus 62 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l 141 (218)
.+++++.+..+... .++ .+..+++|++|.+.++.. ..++ .+..+++|++|++++|. +
T Consensus 44 ~~L~~L~l~~n~i~-----------~l~-~l~~l~~L~~L~l~~n~~----~~~~-~l~~l~~L~~L~l~~n~------l 100 (197)
T 4ezg_A 44 NSLTYITLANINVT-----------DLT-GIEYAHNIKDLTINNIHA----TNYN-PISGLSNLERLRIMGKD------V 100 (197)
T ss_dssp HTCCEEEEESSCCS-----------CCT-TGGGCTTCSEEEEESCCC----SCCG-GGTTCTTCCEEEEECTT------C
T ss_pred CCccEEeccCCCcc-----------ChH-HHhcCCCCCEEEccCCCC----Ccch-hhhcCCCCCEEEeECCc------c
Confidence 35677777766552 233 455666677777666522 1222 35566666666666666 4
Q ss_pred cc-cCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCC
Q 043351 142 KE-IPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCH 212 (218)
Q Consensus 142 ~~-lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~ 212 (218)
.. .|..++.+++|++|++++|.+. +..|..++.++ |+.|++++|..++.+| .+..+++|++|++++|.
T Consensus 101 ~~~~~~~l~~l~~L~~L~Ls~n~i~--~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 101 TSDKIPNLSGLTSLTLLDISHSAHD--DSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG 170 (197)
T ss_dssp BGGGSCCCTTCTTCCEEECCSSBCB--GGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC
T ss_pred CcccChhhcCCCCCCEEEecCCccC--cHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC
Confidence 33 4555666666666666666652 22455566666 6666666665455555 45666666666666665
No 16
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.50 E-value=3.6e-14 Score=108.24 Aligned_cols=126 Identities=17% Similarity=0.086 Sum_probs=105.2
Q ss_pred CCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccccc
Q 043351 61 DEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNL 140 (218)
Q Consensus 61 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~ 140 (218)
..+++.+.+..+... .++.+..+++|++|.+.++.. ....+..+..+++|++|++++|.
T Consensus 65 l~~L~~L~l~~n~~~------------~~~~l~~l~~L~~L~l~~n~l---~~~~~~~l~~l~~L~~L~Ls~n~------ 123 (197)
T 4ezg_A 65 AHNIKDLTINNIHAT------------NYNPISGLSNLERLRIMGKDV---TSDKIPNLSGLTSLTLLDISHSA------ 123 (197)
T ss_dssp CTTCSEEEEESCCCS------------CCGGGTTCTTCCEEEEECTTC---BGGGSCCCTTCTTCCEEECCSSB------
T ss_pred CCCCCEEEccCCCCC------------cchhhhcCCCCCEEEeECCcc---CcccChhhcCCCCCCEEEecCCc------
Confidence 457889999987542 344788999999999998643 33456668899999999999999
Q ss_pred cc-ccCcccCCCCCCCeEeccCCC-ccccccccccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCc
Q 043351 141 IK-EIPPNVGKLVHLRYLNLSDKF-IETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 141 l~-~lp~~i~~L~~L~~L~l~~~~-l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
+. ..|..++.+++|++|++++|. +.. +| .++.++ |+.|++++|. +..+| .+..+++|++|++++|++
T Consensus 124 i~~~~~~~l~~l~~L~~L~L~~n~~i~~---~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 124 HDDSILTKINTLPKVNSIDLSYNGAITD---IM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CBGGGHHHHTTCSSCCEEECCSCTBCCC---CG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEECBC--
T ss_pred cCcHhHHHHhhCCCCCEEEccCCCCccc---cH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEeeCccc
Confidence 55 467889999999999999998 887 87 689999 9999999998 88887 889999999999999985
No 17
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.50 E-value=4.1e-14 Score=113.21 Aligned_cols=132 Identities=17% Similarity=0.168 Sum_probs=107.5
Q ss_pred ccCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccc
Q 043351 59 SFDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESN 138 (218)
Q Consensus 59 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~ 138 (218)
.++..++++.+..+... ...+..+..+++|+.|.+.++.. ....+..|..+++|++|++++|.
T Consensus 25 ~l~~~l~~L~ls~n~l~----------~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~L~~n~---- 87 (276)
T 2z62_A 25 NLPFSTKNLDLSFNPLR----------HLGSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTLILTGNP---- 87 (276)
T ss_dssp SSCTTCCEEECTTCCCC----------EECTTTTTTCTTCSEEECTTCCC---CEECTTTTTTCTTCCEEECTTCC----
T ss_pred CCCCCccEEECCCCccc----------ccCHhHhccccCCcEEECCCCcC---CccCHHHccCCcCCCEEECCCCc----
Confidence 45667999999888774 22344788899999999998643 34445568889999999999999
Q ss_pred ccccccC-cccCCCCCCCeEeccCCCccccccccc-cccCce-ecEEeecCCCCCCC--CchhhcCCCCCcEEeccCCCc
Q 043351 139 NLIKEIP-PNVGKLVHLRYLNLSDKFIETTGVFVN-TIIMPC-LSSFQIESCPKLKM--LPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 139 ~~l~~lp-~~i~~L~~L~~L~l~~~~l~~~~~lp~-~i~~L~-L~~L~l~~~~~l~~--lP~~i~~L~~L~~L~l~~~~~ 213 (218)
+..+| ..++++++|++|++++|.+.. ++. .++.+. |++|++++|. +.. +|..++++++|++|++++|.+
T Consensus 88 --l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 88 --IQSLALGAFSGLSSLQKLVAVETNLAS---LENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp --CCEECTTTTTTCTTCCEEECTTSCCCC---STTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred --cCccChhhhcCCccccEEECCCCCccc---cCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCC
Confidence 77665 678999999999999999877 655 688899 9999999988 654 788899999999999999974
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.49 E-value=5.6e-14 Score=122.87 Aligned_cols=132 Identities=17% Similarity=0.168 Sum_probs=111.2
Q ss_pred ccCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccc
Q 043351 59 SFDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESN 138 (218)
Q Consensus 59 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~ 138 (218)
.++..++++.+..+... ...+..+..+++|++|++.++. .....+..|..+++|++|++++|.
T Consensus 25 ~l~~~l~~L~Ls~n~l~----------~~~~~~~~~l~~L~~L~Ls~n~---i~~i~~~~~~~l~~L~~L~L~~n~---- 87 (570)
T 2z63_A 25 NLPFSTKNLDLSFNPLR----------HLGSYSFFSFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTGNP---- 87 (570)
T ss_dssp SSCSSCCEEECCSCCCC----------EECTTTTTTCSSCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTCC----
T ss_pred CccccccEEEccCCccC----------ccChhHhhCCCCceEEECCCCc---CCccCcccccCchhCCEEeCcCCc----
Confidence 45678999999988774 3345678999999999999864 334556678899999999999999
Q ss_pred ccccccC-cccCCCCCCCeEeccCCCccccccccc-cccCce-ecEEeecCCCCCC--CCchhhcCCCCCcEEeccCCCc
Q 043351 139 NLIKEIP-PNVGKLVHLRYLNLSDKFIETTGVFVN-TIIMPC-LSSFQIESCPKLK--MLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 139 ~~l~~lp-~~i~~L~~L~~L~l~~~~l~~~~~lp~-~i~~L~-L~~L~l~~~~~l~--~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
+..+| ..++.+++|++|++++|.+.. +|. .++.+. |++|++++|. +. .+|..++++++|++|++++|.+
T Consensus 88 --l~~~~~~~~~~l~~L~~L~L~~n~l~~---l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 88 --IQSLALGAFSGLSSLQKLVAVETNLAS---LENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp --CCEECTTTTTTCTTCCEEECTTSCCCC---STTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred --CCccCHhhhcCcccccccccccccccc---CCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCcc
Confidence 77775 679999999999999999988 876 689999 9999999998 55 4799999999999999999974
No 19
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.48 E-value=7e-14 Score=116.34 Aligned_cols=132 Identities=19% Similarity=0.110 Sum_probs=105.1
Q ss_pred ccCCceeEEEEeeeccchhhhhhhhhhhhhhcccc-CCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcc
Q 043351 59 SFDEKIKRLHISCKMYDTVHEFSQHLSEELFISSF-DEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFES 137 (218)
Q Consensus 59 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~ 137 (218)
.++..++.|.+..+... ...+..+. .+++|+.|.+.++.. ....+..|..+++|+.|+|++|.
T Consensus 36 ~~~~~l~~L~Ls~N~l~----------~l~~~~~~~~l~~L~~L~L~~N~i---~~i~~~~~~~l~~L~~L~Ls~N~--- 99 (361)
T 2xot_A 36 SLPSYTALLDLSHNNLS----------RLRAEWTPTRLTNLHSLLLSHNHL---NFISSEAFVPVPNLRYLDLSSNH--- 99 (361)
T ss_dssp SCCTTCSEEECCSSCCC----------EECTTSSSSCCTTCCEEECCSSCC---CEECTTTTTTCTTCCEEECCSSC---
T ss_pred cCCCCCCEEECCCCCCC----------ccChhhhhhcccccCEEECCCCcC---CccChhhccCCCCCCEEECCCCc---
Confidence 45667889999888774 22344455 899999999988643 34445668899999999999999
Q ss_pred cccccccCc-ccCCCCCCCeEeccCCCccccccc-cccccCce-ecEEeecCCCCCCCCchhh----cCCCCCcEEeccC
Q 043351 138 NNLIKEIPP-NVGKLVHLRYLNLSDKFIETTGVF-VNTIIMPC-LSSFQIESCPKLKMLPYYL----LQTTKLQELKIYL 210 (218)
Q Consensus 138 ~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~~~~l-p~~i~~L~-L~~L~l~~~~~l~~lP~~i----~~L~~L~~L~l~~ 210 (218)
+..+|. .+..+++|++|+|++|.+.. + |..+..+. |+.|++++|. +..+|..+ ..+++|++|++++
T Consensus 100 ---l~~~~~~~~~~l~~L~~L~L~~N~i~~---~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 100 ---LHTLDEFLFSDLQALEVLLLYNNHIVV---VDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp ---CCEECTTTTTTCTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCS
T ss_pred ---CCcCCHHHhCCCcCCCEEECCCCcccE---ECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCC
Confidence 777765 57899999999999999866 6 66788999 9999999888 88888765 5789999999999
Q ss_pred CCc
Q 043351 211 CHI 213 (218)
Q Consensus 211 ~~~ 213 (218)
|.+
T Consensus 173 N~l 175 (361)
T 2xot_A 173 NKL 175 (361)
T ss_dssp SCC
T ss_pred CCC
Confidence 974
No 20
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.48 E-value=9.3e-14 Score=110.94 Aligned_cols=84 Identities=25% Similarity=0.368 Sum_probs=48.4
Q ss_pred HhcCCCCcEEEecCCCCcccccccccCc-ccCCCCCCCeEeccCCCcccccccccc-ccCce-ecEEeecCCCCCCCCch
Q 043351 119 FGELTCLRALCISNNSFESNNLIKEIPP-NVGKLVHLRYLNLSDKFIETTGVFVNT-IIMPC-LSSFQIESCPKLKMLPY 195 (218)
Q Consensus 119 ~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~~~~lp~~-i~~L~-L~~L~l~~~~~l~~lP~ 195 (218)
|..+++|++|++++|. +..+|. .++.+++|++|++++|.+.. +|.. ++.++ |+.|++++|. +..+|.
T Consensus 105 ~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 174 (270)
T 2o6q_A 105 FDQLVNLAELRLDRNQ------LKSLPPRVFDSLTKLTYLSLGYNELQS---LPKGVFDKLTSLKELRLYNNQ-LKRVPE 174 (270)
T ss_dssp TTTCSSCCEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred cccccCCCEEECCCCc------cCeeCHHHhCcCcCCCEEECCCCcCCc---cCHhHccCCcccceeEecCCc-CcEeCh
Confidence 4445555555555555 444432 34566666666666666655 5543 45666 6666666665 555554
Q ss_pred -hhcCCCCCcEEeccCCC
Q 043351 196 -YLLQTTKLQELKIYLCH 212 (218)
Q Consensus 196 -~i~~L~~L~~L~l~~~~ 212 (218)
.+.++++|++|++++|.
T Consensus 175 ~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp TTTTTCTTCCEEECCSSC
T ss_pred hHhccCCCcCEEECCCCc
Confidence 35666677777776665
No 21
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.48 E-value=6.3e-14 Score=109.48 Aligned_cols=113 Identities=16% Similarity=0.176 Sum_probs=96.5
Q ss_pred hhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcc-cCCCCCCCeEeccCCCc
Q 043351 86 EELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPN-VGKLVHLRYLNLSDKFI 164 (218)
Q Consensus 86 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-i~~L~~L~~L~l~~~~l 164 (218)
..+|..+. ++|+.|.+.++.. ....|..|..+++|++|+|++|. +..+|.. ++.+++|++|++++|.+
T Consensus 32 ~~ip~~~~--~~L~~L~Ls~n~i---~~~~~~~~~~l~~L~~L~L~~N~------l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 32 ASVPAGIP--TNAQILYLHDNQI---TKLEPGVFDSLINLKELYLGSNQ------LGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp SSCCSCCC--TTCSEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CccCCCCC--CCCCEEEcCCCcc---CccCHHHhhCccCCcEEECCCCC------CCCcChhhcccCCCcCEEECCCCcC
Confidence 34555443 8899999998743 44557778999999999999999 8888854 58999999999999999
Q ss_pred ccccccccc-ccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCc
Q 043351 165 ETTGVFVNT-IIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 165 ~~~~~lp~~-i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
.. +|.. +..+. |+.|++++|. +..+|..+..+++|++|++++|.+
T Consensus 101 ~~---l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l 147 (229)
T 3e6j_A 101 TV---LPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQL 147 (229)
T ss_dssp CC---CCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCC
T ss_pred Cc---cChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcC
Confidence 88 8765 57899 9999999998 889999999999999999999974
No 22
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.48 E-value=8.2e-14 Score=111.92 Aligned_cols=113 Identities=15% Similarity=0.157 Sum_probs=70.7
Q ss_pred hccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccccccccc-CcccCCCCCCCeEeccCCCcccc
Q 043351 89 FISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEI-PPNVGKLVHLRYLNLSDKFIETT 167 (218)
Q Consensus 89 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~~ 167 (218)
+..+..+++|++|.+.++.. .....|..+..+++|++|++++|. +..+ |..++.+++|++|++++|.+..
T Consensus 73 ~~~~~~l~~L~~L~l~~n~~--l~~~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~~n~l~~- 143 (285)
T 1ozn_A 73 AAAFTGLALLEQLDLSDNAQ--LRSVDPATFHGLGRLHTLHLDRCG------LQELGPGLFRGLAALQYLYLQDNALQA- 143 (285)
T ss_dssp TTTTTTCTTCCEEECCSCTT--CCCCCTTTTTTCTTCCEEECTTSC------CCCCCTTTTTTCTTCCEEECCSSCCCC-
T ss_pred HhhcCCccCCCEEeCCCCCC--ccccCHHHhcCCcCCCEEECCCCc------CCEECHhHhhCCcCCCEEECCCCcccc-
Confidence 44555566666666655420 122224456666667777777666 5554 4556677777777777777765
Q ss_pred cccccc-ccCce-ecEEeecCCCCCCCCch-hhcCCCCCcEEeccCCCc
Q 043351 168 GVFVNT-IIMPC-LSSFQIESCPKLKMLPY-YLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 168 ~~lp~~-i~~L~-L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~ 213 (218)
+|.. ++.++ |+.|++++|. ++.+|. .+..+++|++|++++|.+
T Consensus 144 --~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 144 --LPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp --CCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCC
T ss_pred --cCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCcc
Confidence 5543 66677 7777777776 666664 366777777777777764
No 23
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.47 E-value=8.9e-14 Score=112.43 Aligned_cols=128 Identities=14% Similarity=0.091 Sum_probs=88.8
Q ss_pred CceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccc
Q 043351 62 EKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLI 141 (218)
Q Consensus 62 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l 141 (218)
...+.|.+..+.. ..+|..+..+++|+.|.+.++.. ....+..|..+++|+.|++++|. +
T Consensus 77 ~~L~~L~Ls~N~l-----------~~l~~~~~~l~~L~~L~l~~N~l---~~l~~~~~~~l~~L~~L~L~~N~------l 136 (290)
T 1p9a_G 77 PVLGTLDLSHNQL-----------QSLPLLGQTLPALTVLDVSFNRL---TSLPLGALRGLGELQELYLKGNE------L 136 (290)
T ss_dssp TTCCEEECCSSCC-----------SSCCCCTTTCTTCCEEECCSSCC---CCCCSSTTTTCTTCCEEECTTSC------C
T ss_pred CcCCEEECCCCcC-----------CcCchhhccCCCCCEEECCCCcC---cccCHHHHcCCCCCCEEECCCCC------C
Confidence 3455555555544 34556666777777777777532 23334556777788888888877 6
Q ss_pred cccCcc-cCCCCCCCeEeccCCCccccccccccc-cCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCc
Q 043351 142 KEIPPN-VGKLVHLRYLNLSDKFIETTGVFVNTI-IMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 142 ~~lp~~-i~~L~~L~~L~l~~~~l~~~~~lp~~i-~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
..+|.. +..+++|++|++++|.+.. +|..+ ..+. |+.|++++|. +..+|..+..+.+|++|++++|+.
T Consensus 137 ~~~~~~~~~~l~~L~~L~L~~N~l~~---l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 137 KTLPPGLLTPTPKLEKLSLANNNLTE---LPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCSC---CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CccChhhcccccCCCEEECCCCcCCc---cCHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCCCc
Confidence 666644 4677788888888888777 77654 5677 8888888777 777887777777888888887764
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.47 E-value=2e-14 Score=128.10 Aligned_cols=84 Identities=19% Similarity=0.216 Sum_probs=43.7
Q ss_pred cCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCC-ccccc-cccccccCc------e-ecEEeecCCCCCC
Q 043351 121 ELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKF-IETTG-VFVNTIIMP------C-LSSFQIESCPKLK 191 (218)
Q Consensus 121 ~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~-l~~~~-~lp~~i~~L------~-L~~L~l~~~~~l~ 191 (218)
.+++|++|++++|.. ...+|..++++++|++|++++|. + .| .+|..++++ . |++|++++|. +.
T Consensus 247 ~l~~L~~L~L~~n~l-----~~~~p~~l~~l~~L~~L~Ls~n~~l--~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~ 318 (636)
T 4eco_A 247 NLKDLTDVEVYNCPN-----LTKLPTFLKALPEMQLINVACNRGI--SGEQLKDDWQALADAPVGEKIQIIYIGYNN-LK 318 (636)
T ss_dssp GCTTCCEEEEECCTT-----CSSCCTTTTTCSSCCEEECTTCTTS--CHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CS
T ss_pred ccCCCCEEEecCCcC-----CccChHHHhcCCCCCEEECcCCCCC--ccccchHHHHhhhccccCCCCCEEECCCCc-CC
Confidence 445555555555443 33445455555555555555554 4 23 355555444 4 5555555554 44
Q ss_pred CCch--hhcCCCCCcEEeccCCC
Q 043351 192 MLPY--YLLQTTKLQELKIYLCH 212 (218)
Q Consensus 192 ~lP~--~i~~L~~L~~L~l~~~~ 212 (218)
.+|. .++++++|++|++++|.
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCC
T ss_pred ccCchhhhccCCCCCEEeCcCCc
Confidence 5555 55666666666666655
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.47 E-value=5.5e-14 Score=114.77 Aligned_cols=106 Identities=14% Similarity=0.155 Sum_probs=49.5
Q ss_pred CceeEEEEee-eccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccccc
Q 043351 62 EKIKRLHISC-KMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNL 140 (218)
Q Consensus 62 ~~~r~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~ 140 (218)
..++.+.+.. +... +.+|..+..+++|++|.+.++.. ....|..|..+++|++|++++|.
T Consensus 76 ~~L~~L~L~~~n~l~----------~~~p~~l~~l~~L~~L~Ls~n~l---~~~~p~~~~~l~~L~~L~Ls~N~------ 136 (313)
T 1ogq_A 76 PYLNFLYIGGINNLV----------GPIPPAIAKLTQLHYLYITHTNV---SGAIPDFLSQIKTLVTLDFSYNA------ 136 (313)
T ss_dssp TTCSEEEEEEETTEE----------SCCCGGGGGCTTCSEEEEEEECC---EEECCGGGGGCTTCCEEECCSSE------
T ss_pred CCCCeeeCCCCCccc----------ccCChhHhcCCCCCEEECcCCee---CCcCCHHHhCCCCCCEEeCCCCc------
Confidence 4566666663 4332 33455555555555555555321 22334444455555555555554
Q ss_pred cc-ccCcccCCCCCCCeEeccCCCccccccccccccCce--ecEEeecCCC
Q 043351 141 IK-EIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC--LSSFQIESCP 188 (218)
Q Consensus 141 l~-~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~--L~~L~l~~~~ 188 (218)
+. .+|..++.+++|++|++++|.+. |.+|..++.+. |+.|++++|.
T Consensus 137 l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 137 LSGTLPPSISSLPNLVGITFDGNRIS--GAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp EESCCCGGGGGCTTCCEEECCSSCCE--EECCGGGGCCCTTCCEEECCSSE
T ss_pred cCCcCChHHhcCCCCCeEECcCCccc--CcCCHHHhhhhhcCcEEECcCCe
Confidence 32 34444444444444444444442 22444444442 4444444443
No 26
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.46 E-value=1.7e-13 Score=109.48 Aligned_cols=112 Identities=18% Similarity=0.156 Sum_probs=93.3
Q ss_pred hccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcc-cCCCCCCCeEeccCCCcccc
Q 043351 89 FISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPN-VGKLVHLRYLNLSDKFIETT 167 (218)
Q Consensus 89 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~~ 167 (218)
+..+..+++|+.|.+.++.. ....+..|..+++|++|++++|. +..+|.. ++.+++|++|++++|.+..
T Consensus 102 ~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~- 171 (270)
T 2o6q_A 102 IGVFDQLVNLAELRLDRNQL---KSLPPRVFDSLTKLTYLSLGYNE------LQSLPKGVFDKLTSLKELRLYNNQLKR- 171 (270)
T ss_dssp TTTTTTCSSCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSCCSC-
T ss_pred HhHcccccCCCEEECCCCcc---CeeCHHHhCcCcCCCEEECCCCc------CCccCHhHccCCcccceeEecCCcCcE-
Confidence 34567788888888887532 34445667899999999999999 8888765 7899999999999999987
Q ss_pred ccccc-cccCce-ecEEeecCCCCCCCCchh-hcCCCCCcEEeccCCCc
Q 043351 168 GVFVN-TIIMPC-LSSFQIESCPKLKMLPYY-LLQTTKLQELKIYLCHI 213 (218)
Q Consensus 168 ~~lp~-~i~~L~-L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~ 213 (218)
+|. .+..+. |++|++++|. +..+|.. +..+++|+.|++++|+.
T Consensus 172 --~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 172 --VPEGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp --CCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred --eChhHhccCCCcCEEECCCCc-CCcCCHHHhccccCCCEEEecCCCe
Confidence 876 478899 9999999997 8888865 78899999999999984
No 27
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.46 E-value=2.7e-13 Score=109.62 Aligned_cols=134 Identities=18% Similarity=0.106 Sum_probs=71.8
Q ss_pred ccCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEecccccc------------------chhhhHHHHHh
Q 043351 59 SFDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISV------------------NSRNLLQELFG 120 (218)
Q Consensus 59 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~------------------~~~~~~~~~~~ 120 (218)
.++..++.|.+..+... ...+..+..+++|+.|.+.++... +....+|..+.
T Consensus 28 ~~~~~l~~L~L~~N~l~----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 97 (290)
T 1p9a_G 28 DLPKDTTILHLSENLLY----------TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ 97 (290)
T ss_dssp CCCTTCCEEECTTSCCS----------EEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTT
T ss_pred CCCCCCCEEEcCCCcCC----------ccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhc
Confidence 34556777777766553 223444555566666655554321 01122333344
Q ss_pred cCCCCcEEEecCCCCcccccccccC-cccCCCCCCCeEeccCCCcccccccccc-ccCce-ecEEeecCCCCCCCCchhh
Q 043351 121 ELTCLRALCISNNSFESNNLIKEIP-PNVGKLVHLRYLNLSDKFIETTGVFVNT-IIMPC-LSSFQIESCPKLKMLPYYL 197 (218)
Q Consensus 121 ~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~~~~lp~~-i~~L~-L~~L~l~~~~~l~~lP~~i 197 (218)
.+++|++|++++|. +..+| ..++.+++|++|++++|.+.. +|.. +..+. |+.|++++|+ ++.+|..+
T Consensus 98 ~l~~L~~L~l~~N~------l~~l~~~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~ 167 (290)
T 1p9a_G 98 TLPALTVLDVSFNR------LTSLPLGALRGLGELQELYLKGNELKT---LPPGLLTPTPKLEKLSLANNN-LTELPAGL 167 (290)
T ss_dssp TCTTCCEEECCSSC------CCCCCSSTTTTCTTCCEEECTTSCCCC---CCTTTTTTCTTCCEEECTTSC-CSCCCTTT
T ss_pred cCCCCCEEECCCCc------CcccCHHHHcCCCCCCEEECCCCCCCc---cChhhcccccCCCEEECCCCc-CCccCHHH
Confidence 55555555555555 55554 345556666666666666555 5443 34555 6666666655 55555443
Q ss_pred -cCCCCCcEEeccCCC
Q 043351 198 -LQTTKLQELKIYLCH 212 (218)
Q Consensus 198 -~~L~~L~~L~l~~~~ 212 (218)
.++++|++|++++|.
T Consensus 168 ~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 168 LNGLENLDTLLLQENS 183 (290)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hcCcCCCCEEECCCCc
Confidence 556666666666665
No 28
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.45 E-value=1.1e-13 Score=123.39 Aligned_cols=131 Identities=14% Similarity=0.100 Sum_probs=113.7
Q ss_pred CCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhh-hHHHHHhcC------CCCcEEEecCC
Q 043351 61 DEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRN-LLQELFGEL------TCLRALCISNN 133 (218)
Q Consensus 61 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~-~~~~~~~~l------~~Lr~L~L~~~ 133 (218)
..+.++|.+..+... +.+|..+.++++|++|.+.++.. ..+ .+|..+..+ ++|++|++++|
T Consensus 248 l~~L~~L~L~~n~l~----------~~~p~~l~~l~~L~~L~Ls~n~~--l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 248 LKDLTDVEVYNCPNL----------TKLPTFLKALPEMQLINVACNRG--ISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp CTTCCEEEEECCTTC----------SSCCTTTTTCSSCCEEECTTCTT--SCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred cCCCCEEEecCCcCC----------ccChHHHhcCCCCCEEECcCCCC--CccccchHHHHhhhccccCCCCCEEECCCC
Confidence 456789999988764 66889999999999999998641 334 678888776 99999999999
Q ss_pred CCcccccccccCc--ccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCchhhcCCCC-CcEEecc
Q 043351 134 SFESNNLIKEIPP--NVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTK-LQELKIY 209 (218)
Q Consensus 134 ~~~~~~~l~~lp~--~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~-L~~L~l~ 209 (218)
. +..+|. .++.+++|++|++++|.+. |.+| .++.+. |+.|++++|. +..+|..++++++ |++|+++
T Consensus 316 ~------l~~ip~~~~l~~l~~L~~L~L~~N~l~--g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls 385 (636)
T 4eco_A 316 N------LKTFPVETSLQKMKKLGMLECLYNQLE--GKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFA 385 (636)
T ss_dssp C------CSSCCCHHHHTTCTTCCEEECCSCCCE--EECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECC
T ss_pred c------CCccCchhhhccCCCCCEEeCcCCcCc--cchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEcc
Confidence 9 779998 8999999999999999995 4499 899999 9999999988 7799999999999 9999999
Q ss_pred CCCc
Q 043351 210 LCHI 213 (218)
Q Consensus 210 ~~~~ 213 (218)
+|.+
T Consensus 386 ~N~l 389 (636)
T 4eco_A 386 HNKL 389 (636)
T ss_dssp SSCC
T ss_pred CCcC
Confidence 9974
No 29
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.45 E-value=1.2e-13 Score=117.97 Aligned_cols=132 Identities=17% Similarity=0.119 Sum_probs=94.3
Q ss_pred ccCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccc
Q 043351 59 SFDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESN 138 (218)
Q Consensus 59 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~ 138 (218)
.++..++.|.+..+... ...+..+..+++|+.|.+.++.. ....+..|..+++|++|+|++|.
T Consensus 72 ~~~~~l~~L~L~~n~i~----------~~~~~~~~~l~~L~~L~Ls~n~i---~~~~~~~~~~l~~L~~L~L~~n~---- 134 (452)
T 3zyi_A 72 GIPSNTRYLNLMENNIQ----------MIQADTFRHLHHLEVLQLGRNSI---RQIEVGAFNGLASLNTLELFDNW---- 134 (452)
T ss_dssp CCCTTCSEEECCSSCCC----------EECTTTTTTCTTCCEEECCSSCC---CEECTTTTTTCTTCCEEECCSSC----
T ss_pred CCCCCccEEECcCCcCc----------eECHHHcCCCCCCCEEECCCCcc---CCcChhhccCcccCCEEECCCCc----
Confidence 45678899999888774 33467788899999999988643 34455668888899999999988
Q ss_pred ccccccCcc-cCCCCCCCeEeccCCCccccccccc-cccCce-ecEEeecCCCCCCCCch-hhcCCCCCcEEeccCCC
Q 043351 139 NLIKEIPPN-VGKLVHLRYLNLSDKFIETTGVFVN-TIIMPC-LSSFQIESCPKLKMLPY-YLLQTTKLQELKIYLCH 212 (218)
Q Consensus 139 ~~l~~lp~~-i~~L~~L~~L~l~~~~l~~~~~lp~-~i~~L~-L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~ 212 (218)
+..+|.. ++.+++|++|++++|.+.. +|. .+..+. |+.|++++|+.++.+|. .+..+++|++|++++|.
T Consensus 135 --l~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 135 --LTVIPSGAFEYLSKLRELWLRNNPIES---IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp --CSBCCTTTSSSCTTCCEEECCSCCCCE---ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred --CCccChhhhcccCCCCEEECCCCCcce---eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence 7777654 7788888888888888876 665 456666 66666666555655554 24555566666555554
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.45 E-value=1.6e-13 Score=122.67 Aligned_cols=133 Identities=17% Similarity=0.098 Sum_probs=109.5
Q ss_pred ccCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccc
Q 043351 59 SFDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESN 138 (218)
Q Consensus 59 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~ 138 (218)
.++.+++++.+..+... ...+..+.++++|++|.+.++. .....|..|..+++|++|++++|.
T Consensus 22 ~~~~~l~~L~Ls~n~l~----------~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n~---- 84 (680)
T 1ziw_A 22 DLPTNITVLNLTHNQLR----------RLPAANFTRYSQLTSLDVGFNT---ISKLEPELCQKLPMLKVLNLQHNE---- 84 (680)
T ss_dssp CSCTTCSEEECCSSCCC----------CCCGGGGGGGTTCSEEECCSSC---CCCCCTTHHHHCTTCCEEECCSSC----
T ss_pred ccCCCCcEEECCCCCCC----------CcCHHHHhCCCcCcEEECCCCc---cCccCHHHHhcccCcCEEECCCCc----
Confidence 45678999999988774 3344568899999999998863 345567788999999999999998
Q ss_pred ccccccCc-ccCCCCCCCeEeccCCCcccccccc-ccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCc
Q 043351 139 NLIKEIPP-NVGKLVHLRYLNLSDKFIETTGVFV-NTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 139 ~~l~~lp~-~i~~L~~L~~L~l~~~~l~~~~~lp-~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
+..+|+ .++.+++|++|++++|.+.. +| ..++++. |++|++++|......|..++++++|++|++++|.+
T Consensus 85 --l~~l~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 85 --LSQLSDKTFAFCTNLTELHLMSNSIQK---IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp --CCCCCTTTTTTCTTCSEEECCSSCCCC---CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred --cCccChhhhccCCCCCEEECCCCccCc---cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc
Confidence 888886 58999999999999999876 76 5789999 99999999984444566788899999999999864
No 31
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.45 E-value=1.7e-13 Score=104.41 Aligned_cols=112 Identities=15% Similarity=0.099 Sum_probs=94.0
Q ss_pred hhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccC-cccCCCCCCCeEeccCCCc
Q 043351 86 EELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIP-PNVGKLVHLRYLNLSDKFI 164 (218)
Q Consensus 86 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~~L~l~~~~l 164 (218)
..+|..+ .+.++.|.+.++.. ..+|..|..+++|+.|++++|. +..+| ..+..+++|++|++++|.+
T Consensus 23 ~~ip~~~--~~~l~~L~L~~n~i----~~ip~~~~~l~~L~~L~Ls~N~------i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 23 KVLPKGI--PRDVTELYLDGNQF----TLVPKELSNYKHLTLIDLSNNR------ISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp SSCCSCC--CTTCCEEECCSSCC----CSCCGGGGGCTTCCEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CcCCCCC--CCCCCEEECCCCcC----chhHHHhhcccCCCEEECCCCc------CCEeCHhHccCCCCCCEEECCCCcc
Confidence 3355544 35899999998643 3556778999999999999999 88776 5689999999999999999
Q ss_pred cccccccc-cccCce-ecEEeecCCCCCCCCchh-hcCCCCCcEEeccCCCc
Q 043351 165 ETTGVFVN-TIIMPC-LSSFQIESCPKLKMLPYY-LLQTTKLQELKIYLCHI 213 (218)
Q Consensus 165 ~~~~~lp~-~i~~L~-L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~ 213 (218)
.. +|+ .++.+. |+.|++++|. +..+|.. +..+++|+.|++++|+.
T Consensus 91 ~~---i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RC---IPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CB---CCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CE---eCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 77 764 688999 9999999998 8888864 78999999999999985
No 32
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.45 E-value=9.6e-14 Score=105.54 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=91.2
Q ss_pred hhhhccccCCCCeeEEEeccccccchhhhHHH-HHhcCCCCcEEEecCCCCccccccccc-CcccCCCCCCCeEeccCCC
Q 043351 86 EELFISSFDEKVCHSILTLSFISVNSRNLLQE-LFGELTCLRALCISNNSFESNNLIKEI-PPNVGKLVHLRYLNLSDKF 163 (218)
Q Consensus 86 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L~~L~l~~~~ 163 (218)
..+|..+.. .++.|.+.++.. ....+. .|..+++|++|+|++|. +..+ |..++.+++|++|++++|.
T Consensus 21 ~~ip~~~~~--~l~~L~l~~n~i---~~~~~~~~~~~l~~L~~L~Ls~N~------l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 21 KEIPRDIPL--HTTELLLNDNEL---GRISSDGLFGRLPHLVKLELKRNQ------LTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp SSCCSCCCT--TCSEEECCSCCC---CSBCCSCSGGGCTTCCEEECCSSC------CCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CcCccCCCC--CCCEEECCCCcC---CccCCccccccCCCCCEEECCCCC------CCCcCHhHcCCcccCCEEECCCCc
Confidence 345655543 899999998643 222222 47899999999999999 7776 7789999999999999999
Q ss_pred ccccccccc-cccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCc
Q 043351 164 IETTGVFVN-TIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 164 l~~~~~lp~-~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
+.. +|. .++.+. |++|++++|......|..+..+++|++|++++|+.
T Consensus 90 l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 90 IKE---ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCE---ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCc---cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 976 655 588999 99999999983334577889999999999999984
No 33
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.44 E-value=5.4e-14 Score=116.40 Aligned_cols=85 Identities=16% Similarity=0.193 Sum_probs=41.5
Q ss_pred HhcCCCCcEEEecCCCCcccccccccCc--ccCCCCCCCeEeccCCC-ccccccc-cccccCce-ecEEeecCCCCCCCC
Q 043351 119 FGELTCLRALCISNNSFESNNLIKEIPP--NVGKLVHLRYLNLSDKF-IETTGVF-VNTIIMPC-LSSFQIESCPKLKML 193 (218)
Q Consensus 119 ~~~l~~Lr~L~L~~~~~~~~~~l~~lp~--~i~~L~~L~~L~l~~~~-l~~~~~l-p~~i~~L~-L~~L~l~~~~~l~~l 193 (218)
|..+++|++|++++|. +..+|. .++.+++|++|++++|. +.. + |..++.++ |+.|++++|......
T Consensus 120 ~~~l~~L~~L~L~~n~------l~~l~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 120 FKPLSSLTFLNLLGNP------YKTLGETSLFSHLTKLQILRVGNMDTFTK---IQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp HTTCTTCSEEECTTCC------CSSSCSSCSCTTCTTCCEEEEEESSSCCE---ECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred hCCCccCCEEECCCCC------CcccCchhhhccCCCCcEEECCCCccccc---cCHHHccCCCCCCEEECCCCCcCccC
Confidence 4445555555555554 444443 34455555555555542 433 3 23445555 555555555522222
Q ss_pred chhhcCCCCCcEEeccCCC
Q 043351 194 PYYLLQTTKLQELKIYLCH 212 (218)
Q Consensus 194 P~~i~~L~~L~~L~l~~~~ 212 (218)
|..++.+++|++|++++|.
T Consensus 191 ~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 191 PKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp TTTTTTCSEEEEEEEECSC
T ss_pred HHHHhccccCCeecCCCCc
Confidence 4455555555555555554
No 34
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.44 E-value=2.1e-13 Score=125.05 Aligned_cols=130 Identities=12% Similarity=0.138 Sum_probs=112.6
Q ss_pred CCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhh-hHHHHHhcCC-------CCcEEEecC
Q 043351 61 DEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRN-LLQELFGELT-------CLRALCISN 132 (218)
Q Consensus 61 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~-~~~~~~~~l~-------~Lr~L~L~~ 132 (218)
..+.+.|.+..+... +.+|..+.++++|+.|.+.++.. ... .+|..+..++ +|+.|++++
T Consensus 490 L~~L~~L~Ls~N~l~----------~~iP~~l~~L~~L~~L~Ls~N~~--lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~ 557 (876)
T 4ecn_A 490 LKDLTDVELYNCPNM----------TQLPDFLYDLPELQSLNIACNRG--ISAAQLKADWTRLADDEDTGPKIQIFYMGY 557 (876)
T ss_dssp CTTCCEEEEESCTTC----------CSCCGGGGGCSSCCEEECTTCTT--SCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred CCCCCEEECcCCCCC----------ccChHHHhCCCCCCEEECcCCCC--cccccchHHHHhhhhcccccCCccEEEeeC
Confidence 456889999887754 66888999999999999998641 233 5777776665 999999999
Q ss_pred CCCcccccccccCc--ccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCchhhcCCCC-CcEEec
Q 043351 133 NSFESNNLIKEIPP--NVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTK-LQELKI 208 (218)
Q Consensus 133 ~~~~~~~~l~~lp~--~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~-L~~L~l 208 (218)
|. +..+|. .++.+++|++|++++|.+.. +| .++.++ |+.|++++|. +..+|..+.++++ |+.|++
T Consensus 558 N~------L~~ip~~~~l~~L~~L~~L~Ls~N~l~~---lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~L 626 (876)
T 4ecn_A 558 NN------LEEFPASASLQKMVKLGLLDCVHNKVRH---LE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGF 626 (876)
T ss_dssp SC------CCBCCCHHHHTTCTTCCEEECTTSCCCB---CC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEEC
T ss_pred Cc------CCccCChhhhhcCCCCCEEECCCCCccc---ch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEEC
Confidence 99 779998 89999999999999999987 99 899999 9999999998 7799999999999 999999
Q ss_pred cCCCc
Q 043351 209 YLCHI 213 (218)
Q Consensus 209 ~~~~~ 213 (218)
++|.+
T Consensus 627 s~N~L 631 (876)
T 4ecn_A 627 SHNKL 631 (876)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 99974
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.44 E-value=1.4e-13 Score=117.38 Aligned_cols=136 Identities=13% Similarity=0.140 Sum_probs=110.4
Q ss_pred cccCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcc
Q 043351 58 SSFDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFES 137 (218)
Q Consensus 58 ~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~ 137 (218)
+..+.++++|.+..+... ...|..+..+++|++|.+.++.. .....+..|..+++|++|++++|.
T Consensus 26 p~l~~~l~~L~Ls~n~i~----------~~~~~~~~~l~~L~~L~L~~n~~--~~~i~~~~~~~l~~L~~L~Ls~n~--- 90 (455)
T 3v47_A 26 PELPAHVNYVDLSLNSIA----------ELNETSFSRLQDLQFLKVEQQTP--GLVIRNNTFRGLSSLIILKLDYNQ--- 90 (455)
T ss_dssp CCCCTTCCEEECCSSCCC----------EECTTTTSSCTTCCEEECCCCST--TCEECTTTTTTCTTCCEEECTTCT---
T ss_pred CCCCCccCEEEecCCccC----------cCChhHhccCccccEEECcCCcc--cceECcccccccccCCEEeCCCCc---
Confidence 346688999999988774 44577899999999999998642 113335668899999999999999
Q ss_pred ccccccc-CcccCCCCCCCeEeccCCCcccccccccc--ccCce-ecEEeecCCCCCCCC-chh-hcCCCCCcEEeccCC
Q 043351 138 NNLIKEI-PPNVGKLVHLRYLNLSDKFIETTGVFVNT--IIMPC-LSSFQIESCPKLKML-PYY-LLQTTKLQELKIYLC 211 (218)
Q Consensus 138 ~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~~~~lp~~--i~~L~-L~~L~l~~~~~l~~l-P~~-i~~L~~L~~L~l~~~ 211 (218)
+..+ |..++++++|++|++++|.+. +..|.. ++.+. |++|++++|. +..+ |.. +.++++|++|++++|
T Consensus 91 ---l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 91 ---FLQLETGAFNGLANLEVLTLTQCNLD--GAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp ---TCEECTTTTTTCTTCCEEECTTSCCB--THHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTC
T ss_pred ---cCccChhhccCcccCCEEeCCCCCCC--ccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCC
Confidence 6655 788999999999999999984 335555 88999 9999999998 5555 655 789999999999999
Q ss_pred Ccc
Q 043351 212 HIL 214 (218)
Q Consensus 212 ~~l 214 (218)
.+.
T Consensus 165 ~l~ 167 (455)
T 3v47_A 165 KVK 167 (455)
T ss_dssp CBS
T ss_pred ccc
Confidence 753
No 36
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=3e-14 Score=106.77 Aligned_cols=126 Identities=16% Similarity=0.102 Sum_probs=93.5
Q ss_pred CCceeEEEEeeeccchhhhhhhhhhhhhhccccCC-CCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccc
Q 043351 61 DEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDE-KVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNN 139 (218)
Q Consensus 61 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~ 139 (218)
+.+++.+.+..+... .++. +..+ ++|+.|.+.++.. ..+ ..+..+++|++|++++|.
T Consensus 18 ~~~L~~L~l~~n~l~-----------~i~~-~~~~~~~L~~L~Ls~N~l----~~~-~~l~~l~~L~~L~Ls~N~----- 75 (176)
T 1a9n_A 18 AVRDRELDLRGYKIP-----------VIEN-LGATLDQFDAIDFSDNEI----RKL-DGFPLLRRLKTLLVNNNR----- 75 (176)
T ss_dssp TTSCEEEECTTSCCC-----------SCCC-GGGGTTCCSEEECCSSCC----CEE-CCCCCCSSCCEEECCSSC-----
T ss_pred cCCceEEEeeCCCCc-----------hhHH-hhhcCCCCCEEECCCCCC----Ccc-cccccCCCCCEEECCCCc-----
Confidence 456778888777663 2332 3333 3888888888643 122 347778888888888888
Q ss_pred cccccCccc-CCCCCCCeEeccCCCccccccccc--cccCce-ecEEeecCCCCCCCCchh----hcCCCCCcEEeccCC
Q 043351 140 LIKEIPPNV-GKLVHLRYLNLSDKFIETTGVFVN--TIIMPC-LSSFQIESCPKLKMLPYY----LLQTTKLQELKIYLC 211 (218)
Q Consensus 140 ~l~~lp~~i-~~L~~L~~L~l~~~~l~~~~~lp~--~i~~L~-L~~L~l~~~~~l~~lP~~----i~~L~~L~~L~l~~~ 211 (218)
+..+|+.+ +.+++|++|++++|.+.. +|. .++.++ |+.|++++|+ +..+|.. ++.+++|+.|++++|
T Consensus 76 -l~~~~~~~~~~l~~L~~L~L~~N~i~~---~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 76 -ICRIGEGLDQALPDLTELILTNNSLVE---LGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp -CCEECSCHHHHCTTCCEEECCSCCCCC---GGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred -ccccCcchhhcCCCCCEEECCCCcCCc---chhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 77787665 788888888888888877 876 778888 8888888887 7777775 788888888888888
Q ss_pred Cc
Q 043351 212 HI 213 (218)
Q Consensus 212 ~~ 213 (218)
..
T Consensus 151 ~~ 152 (176)
T 1a9n_A 151 KL 152 (176)
T ss_dssp CH
T ss_pred CH
Confidence 64
No 37
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.44 E-value=2.2e-13 Score=109.37 Aligned_cols=86 Identities=23% Similarity=0.218 Sum_probs=46.0
Q ss_pred HhcCCCCcEEEecCCCCcccccccccCc-ccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCch-
Q 043351 119 FGELTCLRALCISNNSFESNNLIKEIPP-NVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPY- 195 (218)
Q Consensus 119 ~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~- 195 (218)
|..+++|++|++++|. +..+|. .+..+++|++|++++|.+.. ..|..++.++ |+.|++++|. +..+|.
T Consensus 149 ~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~-l~~~~~~ 219 (285)
T 1ozn_A 149 FRDLGNLTHLFLHGNR------ISSVPERAFRGLHSLDRLLLHQNRVAH--VHPHAFRDLGRLMTLYLFANN-LSALPTE 219 (285)
T ss_dssp TTTCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSSC-CSCCCHH
T ss_pred hccCCCccEEECCCCc------ccccCHHHhcCccccCEEECCCCcccc--cCHhHccCcccccEeeCCCCc-CCcCCHH
Confidence 4444455555555554 444443 25555555555555555533 1255555566 6666666655 444543
Q ss_pred hhcCCCCCcEEeccCCCc
Q 043351 196 YLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 196 ~i~~L~~L~~L~l~~~~~ 213 (218)
.+..+++|+.|++++|++
T Consensus 220 ~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 220 ALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp HHTTCTTCCEEECCSSCE
T ss_pred HcccCcccCEEeccCCCc
Confidence 356666666666666653
No 38
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.44 E-value=2.6e-13 Score=108.51 Aligned_cols=108 Identities=19% Similarity=0.192 Sum_probs=54.1
Q ss_pred ccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcc-cCCCCCCCeEeccCCCccccccc
Q 043351 92 SFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPN-VGKLVHLRYLNLSDKFIETTGVF 170 (218)
Q Consensus 92 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~~~~l 170 (218)
+..+++|++|.+.++.. ....+..|..+++|++|++++|. +..+|.. ++.+++|++|++++|.+.. +
T Consensus 105 ~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~l~~n~l~~---~ 172 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQL---QSLPDGVFDKLTNLTYLNLAHNQ------LQSLPKGVFDKLTNLTELDLSYNQLQS---L 172 (272)
T ss_dssp TTTCTTCCEEECTTSCC---CCCCTTTTTTCTTCCEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSCCCC---C
T ss_pred hcCCcCCCEEECCCCcC---CccCHHHhccCCCCCEEECCCCc------cCccCHHHhccCccCCEEECCCCCcCc---c
Confidence 34444555555544321 22223334455555555555555 4444432 3555555555555555544 4
Q ss_pred ccc-ccCce-ecEEeecCCCCCCCCchh-hcCCCCCcEEeccCCC
Q 043351 171 VNT-IIMPC-LSSFQIESCPKLKMLPYY-LLQTTKLQELKIYLCH 212 (218)
Q Consensus 171 p~~-i~~L~-L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~ 212 (218)
|.. ++.+. |+.|++++|. +..+|+. +..+++|++|++++|+
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCCC
Confidence 433 35555 6666666555 4444432 4556666666666654
No 39
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.43 E-value=2.3e-13 Score=115.91 Aligned_cols=133 Identities=16% Similarity=0.142 Sum_probs=89.7
Q ss_pred cccCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcc
Q 043351 58 SSFDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFES 137 (218)
Q Consensus 58 ~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~ 137 (218)
..++..++.+.+..+... ...+..+..+++|+.|.+.++.. ....+..|..+++|+.|+|++|.
T Consensus 60 ~~~~~~l~~L~L~~n~i~----------~~~~~~~~~l~~L~~L~Ls~n~i---~~i~~~~~~~l~~L~~L~L~~n~--- 123 (440)
T 3zyj_A 60 DGISTNTRLLNLHENQIQ----------IIKVNSFKHLRHLEILQLSRNHI---RTIEIGAFNGLANLNTLELFDNR--- 123 (440)
T ss_dssp SCCCTTCSEEECCSCCCC----------EECTTTTSSCSSCCEEECCSSCC---CEECGGGGTTCSSCCEEECCSSC---
T ss_pred CCCCCCCcEEEccCCcCC----------eeCHHHhhCCCCCCEEECCCCcC---CccChhhccCCccCCEEECCCCc---
Confidence 345677888988888774 33456788888999998888643 33445667888888888888888
Q ss_pred cccccccCc-ccCCCCCCCeEeccCCCccccccccc-cccCce-ecEEeecCCCCCCCCch-hhcCCCCCcEEeccCCC
Q 043351 138 NNLIKEIPP-NVGKLVHLRYLNLSDKFIETTGVFVN-TIIMPC-LSSFQIESCPKLKMLPY-YLLQTTKLQELKIYLCH 212 (218)
Q Consensus 138 ~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~~~~lp~-~i~~L~-L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~ 212 (218)
+..+|. .+..+++|++|++++|.+.. +|. .+..+. |+.|++++|+.+..+|. .+.++++|++|++++|.
T Consensus 124 ---l~~~~~~~~~~l~~L~~L~L~~N~i~~---~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 196 (440)
T 3zyj_A 124 ---LTTIPNGAFVYLSKLKELWLRNNPIES---IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196 (440)
T ss_dssp ---CSSCCTTTSCSCSSCCEEECCSCCCCE---ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred ---CCeeCHhHhhccccCceeeCCCCcccc---cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence 777765 57788888888888888766 654 445555 66666655554554443 24455555555555543
No 40
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.43 E-value=6.8e-14 Score=121.95 Aligned_cols=133 Identities=19% Similarity=0.154 Sum_probs=79.8
Q ss_pred cCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccc
Q 043351 60 FDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNN 139 (218)
Q Consensus 60 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~ 139 (218)
.+..++++.+..+... ...|..+..+++|++|.+.++.. ....|..|..+++|++|++++|.
T Consensus 24 ~~~~L~~L~Ls~n~l~----------~~~~~~~~~l~~L~~L~Ls~n~i---~~~~~~~~~~l~~L~~L~Ls~n~----- 85 (549)
T 2z81_A 24 LTAAMKSLDLSFNKIT----------YIGHGDLRACANLQVLILKSSRI---NTIEGDAFYSLGSLEHLDLSDNH----- 85 (549)
T ss_dssp CCTTCCEEECCSSCCC----------EECSSTTSSCTTCCEEECTTSCC---CEECTTTTTTCTTCCEEECTTSC-----
T ss_pred CCCCccEEECcCCccC----------ccChhhhhcCCcccEEECCCCCc---CccChhhccccccCCEEECCCCc-----
Confidence 3456778887777653 22345666777777777766532 23344556666666677666666
Q ss_pred cccccCcc-cCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCc-hhhcCCCCCcEEeccCCC
Q 043351 140 LIKEIPPN-VGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLP-YYLLQTTKLQELKIYLCH 212 (218)
Q Consensus 140 ~l~~lp~~-i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~ 212 (218)
+..+|+. ++.+++|++|++++|.+.. ...|..++++. |++|++++|..+..+| ..++++++|++|++++|.
T Consensus 86 -l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 86 -LSSLSSSWFGPLSSLKYLNLMGNPYQT-LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp -CCSCCHHHHTTCTTCCEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred -cCccCHHHhccCCCCcEEECCCCcccc-cchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 5555543 6666666666666666642 01345566666 6666666665455554 345666666666666655
No 41
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.43 E-value=1.3e-12 Score=113.20 Aligned_cols=133 Identities=16% Similarity=0.137 Sum_probs=91.2
Q ss_pred cCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccc
Q 043351 60 FDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNN 139 (218)
Q Consensus 60 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~ 139 (218)
.....+.+.+..+... +..|..+..+++|+.|.+.++.. .....+|..+..+++|++|++++|.
T Consensus 322 ~l~~L~~L~Ls~n~l~----------~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~l~~L~~L~Ls~N~----- 385 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLT----------DTVFENCGHLTELETLILQMNQL-KELSKIAEMTTQMKSLQQLDISQNS----- 385 (520)
T ss_dssp SCCCCCEEECCSSCCC----------TTTTTTCCCCSSCCEEECCSSCC-CBHHHHHHHHTTCTTCCEEECCSSC-----
T ss_pred hCCcccEEEeECCccC----------hhhhhhhccCCCCCEEEccCCcc-CccccchHHHhhCCCCCEEECCCCc-----
Confidence 3456777777777664 44678889999999999998754 2223567789999999999999999
Q ss_pred cccc-cCcc-cCCCCC----------------------CCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCc
Q 043351 140 LIKE-IPPN-VGKLVH----------------------LRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLP 194 (218)
Q Consensus 140 ~l~~-lp~~-i~~L~~----------------------L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP 194 (218)
+.. +|.. +..+++ |++|++++|.+.. +|..+..++ |+.|++++|+ ++.+|
T Consensus 386 -l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~---ip~~~~~l~~L~~L~L~~N~-l~~l~ 460 (520)
T 2z7x_B 386 -VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS---IPKQVVKLEALQELNVASNQ-LKSVP 460 (520)
T ss_dssp -CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCC---CCGGGGGCTTCCEEECCSSC-CCCCC
T ss_pred -CCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccc---cchhhhcCCCCCEEECCCCc-CCccC
Confidence 555 6653 444444 5555555555544 666666666 6666666665 56666
Q ss_pred hh-hcCCCCCcEEeccCCCc
Q 043351 195 YY-LLQTTKLQELKIYLCHI 213 (218)
Q Consensus 195 ~~-i~~L~~L~~L~l~~~~~ 213 (218)
.. +..+++|+.|++++|++
T Consensus 461 ~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 461 DGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp TTTTTTCTTCCEEECCSSCB
T ss_pred HHHhccCCcccEEECcCCCC
Confidence 55 56666677777776663
No 42
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.43 E-value=2.5e-13 Score=115.75 Aligned_cols=130 Identities=18% Similarity=0.075 Sum_probs=107.5
Q ss_pred CceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccc
Q 043351 62 EKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLI 141 (218)
Q Consensus 62 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l 141 (218)
..++.+.+..+... ...|..+..+++|+.|.+.++.. ....|..|..+++|++|++++|. +
T Consensus 275 ~~L~~L~l~~n~l~----------~~~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~N~------l 335 (455)
T 3v47_A 275 SGVKTCDLSKSKIF----------ALLKSVFSHFTDLEQLTLAQNEI---NKIDDNAFWGLTHLLKLNLSQNF------L 335 (455)
T ss_dssp SCCCEEECCSSCCC----------EECTTTTTTCTTCCEEECTTSCC---CEECTTTTTTCTTCCEEECCSSC------C
T ss_pred cCceEEEecCcccc----------ccchhhcccCCCCCEEECCCCcc---cccChhHhcCcccCCEEECCCCc------c
Confidence 46777777776654 44577788999999999998643 44556678899999999999999 7
Q ss_pred ccc-CcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCchh-hcCCCCCcEEeccCCCc
Q 043351 142 KEI-PPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYY-LLQTTKLQELKIYLCHI 213 (218)
Q Consensus 142 ~~l-p~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~ 213 (218)
..+ |..++.+++|++|++++|.+.. ..|..++.++ |++|++++|+ ++.+|.. +..+++|+.|++++|++
T Consensus 336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 336 GSIDSRMFENLDKLEVLDLSYNHIRA--LGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CEECGGGGTTCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCcChhHhcCcccCCEEECCCCcccc--cChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCCc
Confidence 766 5678999999999999999966 2377899999 9999999988 8888865 58999999999999985
No 43
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.43 E-value=2.1e-13 Score=105.83 Aligned_cols=112 Identities=19% Similarity=0.160 Sum_probs=93.8
Q ss_pred hhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccccccccc-CcccCCCCCCCeEeccCCCcc
Q 043351 87 ELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEI-PPNVGKLVHLRYLNLSDKFIE 165 (218)
Q Consensus 87 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~ 165 (218)
.+|..+. +.++.|.+.++.. ....+..|..+++|++|+|++|. +..+ |..+..+++|++|++++|.+.
T Consensus 25 ~iP~~l~--~~l~~L~l~~n~i---~~i~~~~~~~l~~L~~L~Ls~N~------i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 25 EIPTNLP--ETITEIRLEQNTI---KVIPPGAFSPYKKLRRIDLSNNQ------ISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp SCCSSCC--TTCCEEECCSSCC---CEECTTSSTTCTTCCEEECCSSC------CCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred cCCCccC--cCCCEEECCCCcC---CCcCHhHhhCCCCCCEEECCCCc------CCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 3555443 6899999998643 34445578899999999999999 7776 788999999999999999998
Q ss_pred ccccccccc-cCce-ecEEeecCCCCCCCC-chhhcCCCCCcEEeccCCCc
Q 043351 166 TTGVFVNTI-IMPC-LSSFQIESCPKLKML-PYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 166 ~~~~lp~~i-~~L~-L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~ 213 (218)
. +|..+ ..+. |+.|++++|. +..+ |..+..+++|++|++++|.+
T Consensus 94 ~---l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 140 (220)
T 2v9t_B 94 E---LPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKL 140 (220)
T ss_dssp C---CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred c---cCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcC
Confidence 8 98774 7899 9999999998 6666 56789999999999999975
No 44
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.43 E-value=1.2e-12 Score=106.57 Aligned_cols=108 Identities=16% Similarity=0.101 Sum_probs=81.9
Q ss_pred cCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccC--cccCCCCCCCeEeccCCCccccccc
Q 043351 93 FDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIP--PNVGKLVHLRYLNLSDKFIETTGVF 170 (218)
Q Consensus 93 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp--~~i~~L~~L~~L~l~~~~l~~~~~l 170 (218)
..+++|+.|.+.++............+..+++|++|++++|. +...+ ..+..+++|++|++++|.+.. +
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~------l~~~~~~~~~~~l~~L~~L~Ls~N~l~~---i 268 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS------LRDAAGAPSCDWPSQLNSLNLSFTGLKQ---V 268 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC------CCSSCCCSCCCCCTTCCEEECTTSCCSS---C
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc------CCcccchhhhhhcCCCCEEECCCCccCh---h
Confidence 667777777777654321123333445677888888888888 65544 446678899999999999988 9
Q ss_pred cccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCc
Q 043351 171 VNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 171 p~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
|..+. . |+.|++++|+ ++.+|. +..+++|++|++++|++
T Consensus 269 p~~~~--~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 269 PKGLP--AKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CSSCC--SEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCTT
T ss_pred hhhcc--CCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCCC
Confidence 98887 7 9999999888 888886 88999999999999985
No 45
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.42 E-value=2.6e-13 Score=117.33 Aligned_cols=129 Identities=9% Similarity=-0.012 Sum_probs=105.0
Q ss_pred CceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHh-cCCCCcEEEecCCCCccccc
Q 043351 62 EKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFG-ELTCLRALCISNNSFESNNL 140 (218)
Q Consensus 62 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~~~~ 140 (218)
..++.|.+..+... +..|..+..+++|+.|.++++.. ....|..+. .+++|+.|+|++|.
T Consensus 120 ~~L~~L~L~~N~l~----------~~~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~l~~~l~~L~~L~Ls~N~------ 180 (487)
T 3oja_A 120 QGKKNIYLANNKIT----------MLRDLDEGCRSRVQYLDLKLNEI---DTVNFAELAASSDTLEHLNLQYNF------ 180 (487)
T ss_dssp SSCEEEECCSSCCC----------SGGGBCGGGGSSEEEEECTTSCC---CEEEGGGGGGGTTTCCEEECTTSC------
T ss_pred CCCCEEECCCCCCC----------CCCchhhcCCCCCCEEECCCCCC---CCcChHHHhhhCCcccEEecCCCc------
Confidence 34566666655553 44566788899999999998743 333455554 78999999999999
Q ss_pred ccccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCcc
Q 043351 141 IKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHIL 214 (218)
Q Consensus 141 l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l 214 (218)
+..+|. ...+++|++|++++|.+.. +|+.++.++ |+.|++++|. +..+|..++.+++|+.|++++|++.
T Consensus 181 l~~~~~-~~~l~~L~~L~Ls~N~l~~---~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 181 IYDVKG-QVVFAKLKTLDLSSNKLAF---MGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCEEEC-CCCCTTCCEEECCSSCCCE---ECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBC
T ss_pred cccccc-cccCCCCCEEECCCCCCCC---CCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCc
Confidence 777765 5579999999999999988 998899999 9999999988 8889999999999999999999864
No 46
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.42 E-value=3.8e-13 Score=107.53 Aligned_cols=128 Identities=19% Similarity=0.311 Sum_probs=106.5
Q ss_pred CCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccccc
Q 043351 61 DEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNL 140 (218)
Q Consensus 61 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~ 140 (218)
...++.+.+..+... . .+.+..+++|++|.+.++.. ....+..|..+++|++|++++|.
T Consensus 62 l~~L~~L~l~~n~l~-----------~-~~~l~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~------ 120 (272)
T 3rfs_A 62 LPNVRYLALGGNKLH-----------D-ISALKELTNLTYLILTGNQL---QSLPNGVFDKLTNLKELVLVENQ------ 120 (272)
T ss_dssp CTTCCEEECTTSCCC-----------C-CGGGTTCTTCCEEECTTSCC---CCCCTTTTTTCTTCCEEECTTSC------
T ss_pred CCCCcEEECCCCCCC-----------C-chhhcCCCCCCEEECCCCcc---CccChhHhcCCcCCCEEECCCCc------
Confidence 467899999887763 2 24688999999999998743 34555667899999999999999
Q ss_pred ccccCcc-cCCCCCCCeEeccCCCcccccccccc-ccCce-ecEEeecCCCCCCCCchh-hcCCCCCcEEeccCCCc
Q 043351 141 IKEIPPN-VGKLVHLRYLNLSDKFIETTGVFVNT-IIMPC-LSSFQIESCPKLKMLPYY-LLQTTKLQELKIYLCHI 213 (218)
Q Consensus 141 l~~lp~~-i~~L~~L~~L~l~~~~l~~~~~lp~~-i~~L~-L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~ 213 (218)
+..+|.. ++.+++|++|++++|.+.. +|.. ++.+. |+.|++++|. +..+|.. ++.+++|++|++++|.+
T Consensus 121 l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 121 LQSLPDGVFDKLTNLTYLNLAHNQLQS---LPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCccCHHHhccCCCCCEEECCCCccCc---cCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcC
Confidence 7777654 7999999999999999977 7765 58899 9999999998 7777755 58999999999999974
No 47
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.42 E-value=3.2e-13 Score=110.33 Aligned_cols=113 Identities=10% Similarity=-0.010 Sum_probs=94.4
Q ss_pred hhccccCCCCeeEEEeccccccchhhhHHHHH-hcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccc
Q 043351 88 LFISSFDEKVCHSILTLSFISVNSRNLLQELF-GELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIET 166 (218)
Q Consensus 88 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~-~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~ 166 (218)
.+..+..+++|+.|.+.++.. ....+..+ ..+++|++|++++|. +..+|. ...+++|++|++++|.+..
T Consensus 136 ~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~~l~~L~~L~L~~N~------l~~~~~-~~~l~~L~~L~Ls~N~l~~ 205 (317)
T 3o53_A 136 RDLDEGCRSRVQYLDLKLNEI---DTVNFAELAASSDTLEHLNLQYNF------IYDVKG-QVVFAKLKTLDLSSNKLAF 205 (317)
T ss_dssp GGBCTGGGSSEEEEECTTSCC---CEEEGGGGGGGTTTCCEEECTTSC------CCEEEC-CCCCTTCCEEECCSSCCCE
T ss_pred cchhhhccCCCCEEECCCCCC---CcccHHHHhhccCcCCEEECCCCc------Cccccc-ccccccCCEEECCCCcCCc
Confidence 355677889999999988643 22333334 478999999999999 888865 4569999999999999988
Q ss_pred cccccccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCcc
Q 043351 167 TGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHIL 214 (218)
Q Consensus 167 ~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l 214 (218)
+|+.+..++ |+.|++++|. ++.+|..+..+++|+.|++++|++.
T Consensus 206 ---l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 206 ---MGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp ---ECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCCB
T ss_pred ---chhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCcc
Confidence 998899999 9999999998 8899999999999999999999864
No 48
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.42 E-value=3.5e-13 Score=116.84 Aligned_cols=102 Identities=18% Similarity=0.116 Sum_probs=56.6
Q ss_pred CCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccccccccc-CcccCCCCCCCeEeccCCCccccccccccc
Q 043351 96 KVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEI-PPNVGKLVHLRYLNLSDKFIETTGVFVNTI 174 (218)
Q Consensus 96 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~~~~lp~~i 174 (218)
++|+.|.++++. .....|..|..+++|++|++++|. +..+ |..++.+++|++|++++|.+.. +|..
T Consensus 21 ~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~N~l~~---lp~~- 87 (520)
T 2z7x_B 21 QKTTILNISQNY---ISELWTSDILSLSKLRILIISHNR------IQYLDISVFKFNQELEYLDLSHNKLVK---ISCH- 87 (520)
T ss_dssp TTCSEEECCSSC---CCCCCHHHHTTCTTCCEEECCSSC------CCEEEGGGGTTCTTCCEEECCSSCCCE---EECC-
T ss_pred ccccEEECCCCc---ccccChhhccccccccEEecCCCc------cCCcChHHhhcccCCCEEecCCCceee---cCcc-
Confidence 556666665542 223334455566666666666665 4444 4455666666666666666555 5555
Q ss_pred cCce-ecEEeecCCCCCCC--CchhhcCCCCCcEEeccCCC
Q 043351 175 IMPC-LSSFQIESCPKLKM--LPYYLLQTTKLQELKIYLCH 212 (218)
Q Consensus 175 ~~L~-L~~L~l~~~~~l~~--lP~~i~~L~~L~~L~l~~~~ 212 (218)
.+. |++|++++|. +.. +|..++++++|++|++++|.
T Consensus 88 -~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 88 -PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp -CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred -ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcc
Confidence 455 6666666555 332 44555666666666666554
No 49
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.42 E-value=1.6e-13 Score=124.62 Aligned_cols=115 Identities=16% Similarity=0.089 Sum_probs=62.8
Q ss_pred hccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccc
Q 043351 89 FISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTG 168 (218)
Q Consensus 89 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~ 168 (218)
|..+..+++|+.|.+.++. ..+..|..+..+++|+.|++++|.. ...+|..++.+++|++|++++|.+ .|
T Consensus 435 p~~l~~l~~L~~L~L~~n~---l~~~~p~~~~~l~~L~~L~L~~N~l-----~~~~p~~l~~l~~L~~L~L~~N~l--~~ 504 (768)
T 3rgz_A 435 PSSLGSLSKLRDLKLWLNM---LEGEIPQELMYVKTLETLILDFNDL-----TGEIPSGLSNCTNLNWISLSNNRL--TG 504 (768)
T ss_dssp CGGGGGCTTCCEEECCSSC---CCSCCCGGGGGCTTCCEEECCSSCC-----CSCCCGGGGGCTTCCEEECCSSCC--CS
T ss_pred cHHHhcCCCCCEEECCCCc---ccCcCCHHHcCCCCceEEEecCCcc-----cCcCCHHHhcCCCCCEEEccCCcc--CC
Confidence 3334444444444444431 1223444455555555555555552 224555566666666666666665 33
Q ss_pred cccccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCc
Q 043351 169 VFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 169 ~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
.+|..++.++ |++|++++|+....+|..++++++|+.|++++|++
T Consensus 505 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 3666666666 66666666664445666666666666666666653
No 50
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.42 E-value=2.5e-13 Score=123.32 Aligned_cols=133 Identities=16% Similarity=0.091 Sum_probs=109.7
Q ss_pred CceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccc
Q 043351 62 EKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLI 141 (218)
Q Consensus 62 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l 141 (218)
...+.+.+..+... +.+|..+..+++|+.|.+.++. ..+..|..+..+++|++|++++|.. .
T Consensus 394 ~~L~~L~L~~n~l~----------~~~p~~l~~l~~L~~L~Ls~N~---l~~~~p~~l~~l~~L~~L~L~~n~l-----~ 455 (768)
T 3rgz_A 394 NTLQELYLQNNGFT----------GKIPPTLSNCSELVSLHLSFNY---LSGTIPSSLGSLSKLRDLKLWLNML-----E 455 (768)
T ss_dssp CCCCEEECCSSEEE----------EECCGGGGGCTTCCEEECCSSE---EESCCCGGGGGCTTCCEEECCSSCC-----C
T ss_pred CCccEEECCCCccc----------cccCHHHhcCCCCCEEECcCCc---ccCcccHHHhcCCCCCEEECCCCcc-----c
Confidence 34666666665553 4567788889999999998863 3456677788999999999999994 4
Q ss_pred cccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCcc
Q 043351 142 KEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHIL 214 (218)
Q Consensus 142 ~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l 214 (218)
..+|..++.+++|++|++++|.+ .|.+|..++.++ |+.|++++|+....+|.+++.+++|++|++++|.+.
T Consensus 456 ~~~p~~~~~l~~L~~L~L~~N~l--~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 456 GEIPQELMYVKTLETLILDFNDL--TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCC--CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred CcCCHHHcCCCCceEEEecCCcc--cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc
Confidence 47888999999999999999998 445899999999 999999999955689999999999999999999854
No 51
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.42 E-value=4.3e-13 Score=100.36 Aligned_cols=106 Identities=23% Similarity=0.265 Sum_probs=89.7
Q ss_pred CCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcc-cCCCCCCCeEeccCCCcccccccccc
Q 043351 95 EKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPN-VGKLVHLRYLNLSDKFIETTGVFVNT 173 (218)
Q Consensus 95 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~~~~lp~~ 173 (218)
.++|+.|.+.++.. ....+..|..+++|++|++++|. +..+|.. ++.+++|++|++++|.+.. +|..
T Consensus 27 ~~~l~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~~N~l~~---~~~~ 94 (177)
T 2o6r_A 27 PSSATRLELESNKL---QSLPHGVFDKLTQLTKLSLSQNQ------IQSLPDGVFDKLTKLTILYLHENKLQS---LPNG 94 (177)
T ss_dssp CTTCSEEECCSSCC---CCCCTTTTTTCTTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSCCCC---CCTT
T ss_pred CCCCcEEEeCCCcc---cEeCHHHhcCcccccEEECCCCc------ceEeChhHccCCCccCEEECCCCCccc---cCHH
Confidence 36899999998643 34445567889999999999999 8888765 6899999999999999987 8765
Q ss_pred -ccCce-ecEEeecCCCCCCCCchhh-cCCCCCcEEeccCCCc
Q 043351 174 -IIMPC-LSSFQIESCPKLKMLPYYL-LQTTKLQELKIYLCHI 213 (218)
Q Consensus 174 -i~~L~-L~~L~l~~~~~l~~lP~~i-~~L~~L~~L~l~~~~~ 213 (218)
++.+. |++|++++|. ++.+|..+ ..+++|++|++++|++
T Consensus 95 ~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 95 VFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp TTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred HhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCe
Confidence 58899 9999999997 88888764 7899999999999985
No 52
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.41 E-value=2.2e-13 Score=106.78 Aligned_cols=132 Identities=14% Similarity=0.136 Sum_probs=85.7
Q ss_pred cCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecC-CCCccc
Q 043351 60 FDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISN-NSFESN 138 (218)
Q Consensus 60 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~~~~~ 138 (218)
++..++.+.+..+... ...+..+..+++|++|.+.++.. .....+..|..+++|++|++++ |.
T Consensus 29 ~~~~l~~L~l~~n~l~----------~i~~~~~~~l~~L~~L~l~~n~~--l~~i~~~~f~~l~~L~~L~l~~~n~---- 92 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLR----------TIPSHAFSNLPNISRIYVSIDVT--LQQLESHSFYNLSKVTHIEIRNTRN---- 92 (239)
T ss_dssp CCTTCCEEEEESCCCS----------EECTTTTTTCTTCCEEEEECCSS--CCEECTTTEESCTTCCEEEEEEETT----
T ss_pred CCCcccEEEEeCCcce----------EECHHHccCCCCCcEEeCCCCCC--cceeCHhHcCCCcCCcEEECCCCCC----
Confidence 5567888888877763 22233677778888888877530 1223334567777788888877 66
Q ss_pred ccccccC-cccCCCCCCCeEeccCCCccccccccccccCce-ec---EEeecCCCCCCCCchh-hcCCCCCc-EEeccCC
Q 043351 139 NLIKEIP-PNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LS---SFQIESCPKLKMLPYY-LLQTTKLQ-ELKIYLC 211 (218)
Q Consensus 139 ~~l~~lp-~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~---~L~l~~~~~l~~lP~~-i~~L~~L~-~L~l~~~ 211 (218)
+..+| ..++.+++|++|++++|.+.. +|. ++.+. |+ .|++++|..++.+|.. +..+++|+ .|++++|
T Consensus 93 --l~~i~~~~f~~l~~L~~L~l~~n~l~~---lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 93 --LTYIDPDALKELPLLKFLGIFNTGLKM---FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp --CCEECTTSEECCTTCCEEEEEEECCCS---CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred --eeEcCHHHhCCCCCCCEEeCCCCCCcc---ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence 66665 346677777777777777766 765 55555 55 7777776336666643 56677777 7777766
Q ss_pred Cc
Q 043351 212 HI 213 (218)
Q Consensus 212 ~~ 213 (218)
.+
T Consensus 167 ~l 168 (239)
T 2xwt_C 167 GF 168 (239)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 53
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.41 E-value=5e-13 Score=122.57 Aligned_cols=134 Identities=16% Similarity=0.076 Sum_probs=110.8
Q ss_pred ccCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccc
Q 043351 59 SFDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESN 138 (218)
Q Consensus 59 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~ 138 (218)
..+.++++|.+..+... ...+..+..+++|+.|.+.++.. .....|..|..+++|++|+|++|.
T Consensus 21 ~lp~~l~~LdLs~N~i~----------~i~~~~~~~l~~L~~LdLs~n~~--~~~i~~~~f~~L~~L~~L~Ls~N~---- 84 (844)
T 3j0a_A 21 QVLNTTERLLLSFNYIR----------TVTASSFPFLEQLQLLELGSQYT--PLTIDKEAFRNLPNLRILDLGSSK---- 84 (844)
T ss_dssp SSCTTCCEEEEESCCCC----------EECSSSCSSCCSCSEEEECTTCC--CCEECTTTTSSCTTCCEEECTTCC----
T ss_pred CCCCCcCEEECCCCcCC----------ccChhHCcccccCeEEeCCCCCC--ccccCHHHhcCCCCCCEEECCCCc----
Confidence 36788999999988774 44578899999999999998632 223337778999999999999999
Q ss_pred cccccc-CcccCCCCCCCeEeccCCCcccccccccc--ccCce-ecEEeecCCCCCCCC--chhhcCCCCCcEEeccCCC
Q 043351 139 NLIKEI-PPNVGKLVHLRYLNLSDKFIETTGVFVNT--IIMPC-LSSFQIESCPKLKML--PYYLLQTTKLQELKIYLCH 212 (218)
Q Consensus 139 ~~l~~l-p~~i~~L~~L~~L~l~~~~l~~~~~lp~~--i~~L~-L~~L~l~~~~~l~~l--P~~i~~L~~L~~L~l~~~~ 212 (218)
+..+ |..++.+++|++|++++|.+. +.+|.. +++++ |++|++++|. +..+ |..++++++|++|++++|.
T Consensus 85 --l~~~~p~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 85 --IYFLHPDAFQGLFHLFELRLYFCGLS--DAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp --CCEECTTSSCSCSSCCCEECTTCCCS--SCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred --CcccCHhHccCCcccCEeeCcCCCCC--cccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCc
Confidence 6665 889999999999999999983 335665 89999 9999999998 5544 3578999999999999997
Q ss_pred c
Q 043351 213 I 213 (218)
Q Consensus 213 ~ 213 (218)
+
T Consensus 160 i 160 (844)
T 3j0a_A 160 I 160 (844)
T ss_dssp C
T ss_pred C
Confidence 5
No 54
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.41 E-value=3.1e-13 Score=122.10 Aligned_cols=131 Identities=16% Similarity=0.050 Sum_probs=79.5
Q ss_pred CceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccc-cchhhhHHHHHhcCCCCcEEEecCCCCccccc
Q 043351 62 EKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFIS-VNSRNLLQELFGELTCLRALCISNNSFESNNL 140 (218)
Q Consensus 62 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~-~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~ 140 (218)
.+++++.+..+.. ...+..+.....|+.+.+..... .+.....++.+..++.|+.|+|++|.
T Consensus 173 ~~~~~l~L~~n~~-----------~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~------ 235 (727)
T 4b8c_D 173 PLTPKIELFANGK-----------DEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQ------ 235 (727)
T ss_dssp ------------------------------------------------------------CCCCCCEEECTTSC------
T ss_pred CccceEEeeCCCC-----------CcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCC------
Confidence 3466777766555 22344444455555555443221 12334667889999999999999999
Q ss_pred ccccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCc
Q 043351 141 IKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 141 l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
+..+|..+..+++|++|+|++|.+.. +|.+++.+. |++|+|++|. +..+|..+++|++|++|++++|.+
T Consensus 236 l~~l~~~~~~l~~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l 305 (727)
T 4b8c_D 236 IFNISANIFKYDFLTRLYLNGNSLTE---LPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNMV 305 (727)
T ss_dssp CSCCCGGGGGCCSCSCCBCTTSCCSC---CCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSCC
T ss_pred CCCCChhhcCCCCCCEEEeeCCcCcc---cChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCCC
Confidence 88999999999999999999999988 999999999 9999999998 889999999999999999999974
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.41 E-value=2.6e-13 Score=109.98 Aligned_cols=134 Identities=13% Similarity=0.018 Sum_probs=86.8
Q ss_pred ccCCceeEEEEeeeccchhhhhhhhhhhhhhc-cccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcc
Q 043351 59 SFDEKIKRLHISCKMYDTVHEFSQHLSEELFI-SSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFES 137 (218)
Q Consensus 59 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~ 137 (218)
..+.+++++.+..+... .+|. .+.++++|+.|.+.++.. ......+..+..+++|++|++++|.
T Consensus 25 ~~~~~l~~L~L~~n~l~-----------~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~--- 89 (306)
T 2z66_A 25 GIPSSATRLELESNKLQ-----------SLPHGVFDKLTQLTKLSLSSNGL-SFKGCCSQSDFGTTSLKYLDLSFNG--- 89 (306)
T ss_dssp CCCTTCCEEECCSSCCC-----------CCCTTTTTTCTTCSEEECCSSCC-CEEEEEEHHHHSCSCCCEEECCSCS---
T ss_pred CCCCCCCEEECCCCccC-----------ccCHhHhhccccCCEEECCCCcc-CcccCcccccccccccCEEECCCCc---
Confidence 35568889998887763 3443 467888999999887643 1112224445678888888888887
Q ss_pred cccccccCcccCCCCCCCeEeccCCCccccccccc--cccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCc
Q 043351 138 NNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVN--TIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 138 ~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~--~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
+..+|..+..+++|++|++++|.+.. +|. .+..+. |++|++++|......|..+..+++|++|++++|.+
T Consensus 90 ---i~~l~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 90 ---VITMSSNFLGLEQLEHLDFQHSNLKQ---MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp ---EEEEEEEEETCTTCCEEECTTSEEES---STTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred ---cccChhhcCCCCCCCEEECCCCcccc---cccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence 66777767777777777777777665 543 556666 66666666652223344455566666666666543
No 56
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.40 E-value=4e-13 Score=118.51 Aligned_cols=133 Identities=13% Similarity=0.019 Sum_probs=106.4
Q ss_pred cccCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcc
Q 043351 58 SSFDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFES 137 (218)
Q Consensus 58 ~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~ 137 (218)
..++..++++.+..+... ...|..+.++++|++|.+.++. .....|..|..+++|++|++++|.
T Consensus 29 ~~l~~~l~~L~Ls~n~i~----------~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~--- 92 (606)
T 3t6q_A 29 GTLPNSTECLEFSFNVLP----------TIQNTTFSRLINLTFLDLTRCQ---IYWIHEDTFQSQHRLDTLVLTANP--- 92 (606)
T ss_dssp TTSCTTCCEEECTTCCCS----------EECTTTSTTCTTCSEEECTTCC---CCEECTTTTTTCTTCCEEECTTCC---
T ss_pred CCCCCcCcEEEccCCccC----------cCChhHhccCccceEEECCCCc---cceeChhhccCccccCeeeCCCCc---
Confidence 346778999999988874 3346788999999999999863 345567778899999999999998
Q ss_pred ccccccc-CcccCCCCCCCeEeccCCCccccccc-cccccCce-ecEEeecCCCCCCCCc-hhhcCCCCCcEEeccCCCc
Q 043351 138 NNLIKEI-PPNVGKLVHLRYLNLSDKFIETTGVF-VNTIIMPC-LSSFQIESCPKLKMLP-YYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 138 ~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~~~~l-p~~i~~L~-L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~ 213 (218)
+..+ |..++.+++|++|++++|.+.. + |..++.+. |++|++++|. +..++ +.+..+++|++|++++|.+
T Consensus 93 ---l~~~~~~~~~~l~~L~~L~L~~n~i~~---l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l 165 (606)
T 3t6q_A 93 ---LIFMAETALSGPKALKHLFFIQTGISS---IDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAI 165 (606)
T ss_dssp ---CSEECTTTTSSCTTCCEEECTTSCCSC---GGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCC
T ss_pred ---ccccChhhhcccccccEeeccccCccc---CCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcc
Confidence 6555 6788999999999999999876 6 67788888 9999999888 66542 3444588999999988874
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.40 E-value=3.6e-13 Score=109.13 Aligned_cols=109 Identities=20% Similarity=0.198 Sum_probs=51.6
Q ss_pred cccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccc--cCcccCCCCCCCeEeccCCCccccc
Q 043351 91 SSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKE--IPPNVGKLVHLRYLNLSDKFIETTG 168 (218)
Q Consensus 91 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~--lp~~i~~L~~L~~L~l~~~~l~~~~ 168 (218)
.+..+++|+.|.+.++.. ....+..+..+++|++|++++|. +.. +|..++.+++|++|++++|.+..
T Consensus 121 ~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-- 189 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTHT---RVAFNGIFNGLSSLEVLKMAGNS------FQENFLPDIFTELRNLTFLDLSQCQLEQ-- 189 (306)
T ss_dssp TTTTCTTCCEEECTTSCC---EECSTTTTTTCTTCCEEECTTCE------EGGGEECSCCTTCTTCCEEECTTSCCCE--
T ss_pred hhhhccCCCEEECCCCcC---CccchhhcccCcCCCEEECCCCc------cccccchhHHhhCcCCCEEECCCCCcCC--
Confidence 344455555555544321 22233334445555555555554 332 44555555555555555555533
Q ss_pred cc-cccccCce-ecEEeecCCCCCCCCch-hhcCCCCCcEEeccCCC
Q 043351 169 VF-VNTIIMPC-LSSFQIESCPKLKMLPY-YLLQTTKLQELKIYLCH 212 (218)
Q Consensus 169 ~l-p~~i~~L~-L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~ 212 (218)
+ |..++.++ |+.|++++|. +..+|. .+..+++|++|++++|.
T Consensus 190 -~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 190 -LSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp -ECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSC
T ss_pred -cCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCC
Confidence 3 34445555 5555555554 333332 34445555555555554
No 58
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.40 E-value=4e-13 Score=115.31 Aligned_cols=132 Identities=17% Similarity=0.134 Sum_probs=84.0
Q ss_pred ccCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccc
Q 043351 59 SFDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESN 138 (218)
Q Consensus 59 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~ 138 (218)
.++..++.|.+..+... ...+..+..+++|+.|.+.++. .....|..|..+++|++|+|++|.
T Consensus 29 ~~~~~l~~L~L~~n~l~----------~~~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~---- 91 (477)
T 2id5_A 29 GIPTETRLLDLGKNRIK----------TLNQDEFASFPHLEELELNENI---VSAVEPGAFNNLFNLRTLGLRSNR---- 91 (477)
T ss_dssp CCCTTCSEEECCSSCCC----------EECTTTTTTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECCSSC----
T ss_pred CCCCCCcEEECCCCccc----------eECHhHccCCCCCCEEECCCCc---cCEeChhhhhCCccCCEEECCCCc----
Confidence 45667888888887764 3335667778888888887753 233445667777778888887777
Q ss_pred ccccccCcc-cCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCC-chhhcCCCCCcEEeccCCC
Q 043351 139 NLIKEIPPN-VGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKML-PYYLLQTTKLQELKIYLCH 212 (218)
Q Consensus 139 ~~l~~lp~~-i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~ 212 (218)
+..+|.. ++.+++|++|++++|.+.. ..|..+..+. |+.|++++|. +..+ |..+.++++|++|++++|.
T Consensus 92 --l~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 163 (477)
T 2id5_A 92 --LKLIPLGVFTGLSNLTKLDISENKIVI--LLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCN 163 (477)
T ss_dssp --CCSCCTTSSTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCC
T ss_pred --CCccCcccccCCCCCCEEECCCCcccc--CChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCc
Confidence 6666643 5677777777777777644 1244556666 6666666655 3332 3345555555555555554
No 59
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.40 E-value=3.8e-13 Score=100.69 Aligned_cols=109 Identities=15% Similarity=0.100 Sum_probs=92.5
Q ss_pred ccccCCCCeeEEEeccccccchhhhHHHHHhcCC-CCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccc
Q 043351 90 ISSFDEKVCHSILTLSFISVNSRNLLQELFGELT-CLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTG 168 (218)
Q Consensus 90 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~ 168 (218)
..+..+.+|+.|.+.++.. ..+|. +..+. +|++|++++|. +..+ +.++.+++|++|++++|.+..
T Consensus 13 ~~~~~~~~L~~L~l~~n~l----~~i~~-~~~~~~~L~~L~Ls~N~------l~~~-~~l~~l~~L~~L~Ls~N~l~~-- 78 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKI----PVIEN-LGATLDQFDAIDFSDNE------IRKL-DGFPLLRRLKTLLVNNNRICR-- 78 (176)
T ss_dssp CEEECTTSCEEEECTTSCC----CSCCC-GGGGTTCCSEEECCSSC------CCEE-CCCCCCSSCCEEECCSSCCCE--
T ss_pred HhcCCcCCceEEEeeCCCC----chhHH-hhhcCCCCCEEECCCCC------CCcc-cccccCCCCCEEECCCCcccc--
Confidence 4567889999999999754 23344 44444 99999999999 8887 579999999999999999988
Q ss_pred cccccc-cCce-ecEEeecCCCCCCCCch--hhcCCCCCcEEeccCCCcc
Q 043351 169 VFVNTI-IMPC-LSSFQIESCPKLKMLPY--YLLQTTKLQELKIYLCHIL 214 (218)
Q Consensus 169 ~lp~~i-~~L~-L~~L~l~~~~~l~~lP~--~i~~L~~L~~L~l~~~~~l 214 (218)
+|+.+ +.++ |++|++++|. ++.+|. .+..+++|++|++++|++-
T Consensus 79 -~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 79 -IGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp -ECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred -cCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCC
Confidence 98776 8899 9999999998 888997 7899999999999999853
No 60
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.39 E-value=9e-13 Score=106.51 Aligned_cols=120 Identities=18% Similarity=0.191 Sum_probs=54.3
Q ss_pred CceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccc
Q 043351 62 EKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLI 141 (218)
Q Consensus 62 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l 141 (218)
.+++.|.+..+... .+++ +..+++|+.|.+.++.. ..++. +..+++|+.|++++|. +
T Consensus 68 ~~L~~L~L~~n~l~-----------~~~~-l~~l~~L~~L~l~~n~l----~~~~~-l~~l~~L~~L~L~~n~------i 124 (291)
T 1h6t_A 68 PNVTKLFLNGNKLT-----------DIKP-LANLKNLGWLFLDENKV----KDLSS-LKDLKKLKSLSLEHNG------I 124 (291)
T ss_dssp TTCCEEECCSSCCC-----------CCGG-GTTCTTCCEEECCSSCC----CCGGG-GTTCTTCCEEECTTSC------C
T ss_pred CCCCEEEccCCccC-----------CCcc-cccCCCCCEEECCCCcC----CCChh-hccCCCCCEEECCCCc------C
Confidence 45566666655542 1222 55555555555555422 11222 4455555555555555 4
Q ss_pred cccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCC
Q 043351 142 KEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLC 211 (218)
Q Consensus 142 ~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~ 211 (218)
..+| .++.+++|++|++++|.+.. + +.++.++ |+.|++++|. +..+|. +..+++|++|++++|
T Consensus 125 ~~~~-~l~~l~~L~~L~l~~n~l~~---~-~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 125 SDIN-GLVHLPQLESLYLGNNKITD---I-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CCCG-GGGGCTTCCEEECCSSCCCC---C-GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSS
T ss_pred CCCh-hhcCCCCCCEEEccCCcCCc---c-hhhccCCCCCEEEccCCc-cccchh-hcCCCccCEEECCCC
Confidence 4332 24444444444444444443 3 2344444 4444444443 333332 444444444444444
No 61
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.39 E-value=4.4e-13 Score=112.31 Aligned_cols=129 Identities=14% Similarity=0.099 Sum_probs=93.9
Q ss_pred CCceeEEEEeeeccchhhhhhhhhhhhhhcc-ccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccc
Q 043351 61 DEKIKRLHISCKMYDTVHEFSQHLSEELFIS-SFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNN 139 (218)
Q Consensus 61 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~ 139 (218)
...++++.+..+... .+|.. +..+++|+.|.+.++.. ....+..|..+++|++|++++|.
T Consensus 44 l~~l~~l~l~~~~l~-----------~l~~~~~~~l~~L~~L~L~~n~i---~~~~~~~~~~l~~L~~L~L~~n~----- 104 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-----------KLPAALLDSFRQVELLNLNDLQI---EEIDTYAFAYAHTIQKLYMGFNA----- 104 (390)
T ss_dssp GCCCSEEEEESCEES-----------EECTHHHHHCCCCSEEECTTSCC---CEECTTTTTTCTTCCEEECCSSC-----
T ss_pred cCCceEEEecCCchh-----------hCChhHhcccccCcEEECCCCcc---cccChhhccCCCCcCEEECCCCC-----
Confidence 356788888877663 33433 56778888888887532 33444567788888888888888
Q ss_pred cccccC-cccCCCCCCCeEeccCCCccccccccccc-cCce-ecEEeecCCCCCCCCc-hhhcCCCCCcEEeccCCCc
Q 043351 140 LIKEIP-PNVGKLVHLRYLNLSDKFIETTGVFVNTI-IMPC-LSSFQIESCPKLKMLP-YYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 140 ~l~~lp-~~i~~L~~L~~L~l~~~~l~~~~~lp~~i-~~L~-L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~ 213 (218)
+..+| ..++.+++|++|++++|.+.. +|..+ +.++ |++|++++|. +..+| ..+.++++|++|++++|.+
T Consensus 105 -l~~~~~~~~~~l~~L~~L~L~~n~l~~---l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 105 -IRYLPPHVFQNVPLLTVLVLERNDLSS---LPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRL 177 (390)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCC
T ss_pred -CCcCCHHHhcCCCCCCEEECCCCccCc---CCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcC
Confidence 66664 457888888888888888877 87764 7788 8888888887 55554 4577888888888888864
No 62
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.39 E-value=4.2e-13 Score=118.03 Aligned_cols=101 Identities=18% Similarity=0.165 Sum_probs=88.1
Q ss_pred CeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccccccccccC
Q 043351 97 VCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIM 176 (218)
Q Consensus 97 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~ 176 (218)
.|+.|.+.++.. ..+|. ++.+++|+.|+|++|. +..+|..++.+++|++|+|++|.+.. +| .++.
T Consensus 442 ~L~~L~Ls~n~l----~~lp~-~~~l~~L~~L~Ls~N~------l~~lp~~~~~l~~L~~L~Ls~N~l~~---lp-~l~~ 506 (567)
T 1dce_A 442 DVRVLHLAHKDL----TVLCH-LEQLLLVTHLDLSHNR------LRALPPALAALRCLEVLQASDNALEN---VD-GVAN 506 (567)
T ss_dssp TCSEEECTTSCC----SSCCC-GGGGTTCCEEECCSSC------CCCCCGGGGGCTTCCEEECCSSCCCC---CG-GGTT
T ss_pred CceEEEecCCCC----CCCcC-ccccccCcEeecCccc------ccccchhhhcCCCCCEEECCCCCCCC---Cc-ccCC
Confidence 478888888643 33565 8899999999999999 88999999999999999999999988 88 8999
Q ss_pred ce-ecEEeecCCCCCCCC--chhhcCCCCCcEEeccCCCc
Q 043351 177 PC-LSSFQIESCPKLKML--PYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 177 L~-L~~L~l~~~~~l~~l--P~~i~~L~~L~~L~l~~~~~ 213 (218)
++ |++|++++|. +..+ |..++.|++|+.|++++|++
T Consensus 507 l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 507 LPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp CSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred CCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 99 9999999988 7777 88999999999999999985
No 63
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=1.9e-13 Score=99.39 Aligned_cols=107 Identities=22% Similarity=0.248 Sum_probs=91.0
Q ss_pred CCCCeeEEEeccccccchh-hhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccccccc
Q 043351 94 DEKVCHSILTLSFISVNSR-NLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVN 172 (218)
Q Consensus 94 ~~~~Lr~L~l~~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~ 172 (218)
..++++.|.+.++.. . +.+|..+..+++|++|++++|. +..+ ..++.+++|++|++++|.+. +.+|.
T Consensus 15 ~~~~l~~L~l~~n~l---~~~~~~~~~~~l~~L~~L~l~~n~------l~~~-~~~~~l~~L~~L~Ls~n~i~--~~~~~ 82 (149)
T 2je0_A 15 TPSDVKELVLDNSRS---NEGKLEGLTDEFEELEFLSTINVG------LTSI-ANLPKLNKLKKLELSDNRVS--GGLEV 82 (149)
T ss_dssp CGGGCSEEECTTCBC---BTTBCCSCCTTCTTCCEEECTTSC------CCCC-TTCCCCTTCCEEECCSSCCC--SCTHH
T ss_pred CCccCeEEEccCCcC---ChhHHHHHHhhcCCCcEEECcCCC------CCCc-hhhhcCCCCCEEECCCCccc--chHHH
Confidence 447899999998743 2 3566677899999999999999 7777 67999999999999999984 44677
Q ss_pred cccCce-ecEEeecCCCCCCCCc--hhhcCCCCCcEEeccCCCc
Q 043351 173 TIIMPC-LSSFQIESCPKLKMLP--YYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 173 ~i~~L~-L~~L~l~~~~~l~~lP--~~i~~L~~L~~L~l~~~~~ 213 (218)
.++.++ |++|++++|. ++.+| ..++.+++|++|++++|.+
T Consensus 83 ~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp HHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred HhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcc
Confidence 777799 9999999998 88765 7899999999999999974
No 64
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.39 E-value=1.1e-12 Score=106.88 Aligned_cols=102 Identities=17% Similarity=0.139 Sum_probs=45.6
Q ss_pred ccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCcccccccc
Q 043351 92 SFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFV 171 (218)
Q Consensus 92 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp 171 (218)
+..+++|+.|.+.++.. ..++ .+..+++|+.|++++|. +..+|. ++.+++|++|++++|.+.. +|
T Consensus 81 ~~~l~~L~~L~L~~n~l----~~~~-~~~~l~~L~~L~l~~n~------l~~~~~-l~~l~~L~~L~l~~n~l~~---~~ 145 (308)
T 1h6u_A 81 LKNLTKITELELSGNPL----KNVS-AIAGLQSIKTLDLTSTQ------ITDVTP-LAGLSNLQVLYLDLNQITN---IS 145 (308)
T ss_dssp GTTCCSCCEEECCSCCC----SCCG-GGTTCTTCCEEECTTSC------CCCCGG-GTTCTTCCEEECCSSCCCC---CG
T ss_pred HccCCCCCEEEccCCcC----CCch-hhcCCCCCCEEECCCCC------CCCchh-hcCCCCCCEEECCCCccCc---Cc
Confidence 55555555555555432 1111 24445555555555555 444433 4444444444444444443 33
Q ss_pred ccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCC
Q 043351 172 NTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLC 211 (218)
Q Consensus 172 ~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~ 211 (218)
. ++.+. |+.|++++|. +..+|. +..+++|++|++++|
T Consensus 146 ~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 146 P-LAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKADDN 183 (308)
T ss_dssp G-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS
T ss_pred c-ccCCCCccEEEccCCc-CCCChh-hcCCCCCCEEECCCC
Confidence 3 34444 4444444443 333332 344444444444444
No 65
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.38 E-value=3.5e-13 Score=99.96 Aligned_cols=109 Identities=19% Similarity=0.202 Sum_probs=91.4
Q ss_pred cCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccccccc
Q 043351 93 FDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVN 172 (218)
Q Consensus 93 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~ 172 (218)
...++|+.|.+.++.. ....+|..+..+++|++|++++|. +..+ ..++.+++|++|++++|.+.. .+|.
T Consensus 21 ~~~~~L~~L~l~~n~l--~~~~i~~~~~~l~~L~~L~l~~n~------l~~~-~~~~~l~~L~~L~Ls~N~l~~--~~~~ 89 (168)
T 2ell_A 21 RTPAAVRELVLDNCKS--NDGKIEGLTAEFVNLEFLSLINVG------LISV-SNLPKLPKLKKLELSENRIFG--GLDM 89 (168)
T ss_dssp SCTTSCSEEECCSCBC--BTTBCSSCCGGGGGCCEEEEESSC------CCCC-SSCCCCSSCCEEEEESCCCCS--CCCH
T ss_pred CCcccCCEEECCCCCC--ChhhHHHHHHhCCCCCEEeCcCCC------CCCh-hhhccCCCCCEEECcCCcCch--HHHH
Confidence 4458899999998643 113566667899999999999999 7777 679999999999999999844 3566
Q ss_pred cccCce-ecEEeecCCCCCCCCc--hhhcCCCCCcEEeccCCCc
Q 043351 173 TIIMPC-LSSFQIESCPKLKMLP--YYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 173 ~i~~L~-L~~L~l~~~~~l~~lP--~~i~~L~~L~~L~l~~~~~ 213 (218)
.++.++ |++|++++|. +..+| ..+..+++|++|++++|.+
T Consensus 90 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l 132 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEV 132 (168)
T ss_dssp HHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGG
T ss_pred HHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcC
Confidence 667799 9999999998 88877 6889999999999999975
No 66
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.37 E-value=1.2e-12 Score=104.39 Aligned_cols=121 Identities=17% Similarity=0.088 Sum_probs=74.2
Q ss_pred CceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccc
Q 043351 62 EKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLI 141 (218)
Q Consensus 62 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l 141 (218)
.+++.+.+..+... .++ .+..+++|+.|.+.++.. ..++. +..+++|+.|++++|. +
T Consensus 41 ~~L~~L~l~~n~i~-----------~l~-~l~~l~~L~~L~L~~N~i----~~~~~-l~~l~~L~~L~L~~N~------l 97 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQ-----------SLA-GMQFFTNLKELHLSHNQI----SDLSP-LKDLTKLEELSVNRNR------L 97 (263)
T ss_dssp TTCSEEECTTSCCC-----------CCT-TGGGCTTCCEEECCSSCC----CCCGG-GTTCSSCCEEECCSSC------C
T ss_pred CcCcEEECcCCCcc-----------cch-HHhhCCCCCEEECCCCcc----CCChh-hccCCCCCEEECCCCc------c
Confidence 45677777766552 233 466677777777777532 22222 6777777777777777 6
Q ss_pred cccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCc
Q 043351 142 KEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 142 ~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
..+|.. .. .+|++|++++|.+.. +| .++.+. |+.|++++|. ++.+| .++.+++|++|++++|.+
T Consensus 98 ~~l~~~-~~-~~L~~L~L~~N~l~~---~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 98 KNLNGI-PS-ACLSRLFLDNNELRD---TD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp SCCTTC-CC-SSCCEEECCSSCCSB---SG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCC
T ss_pred CCcCcc-cc-CcccEEEccCCccCC---Ch-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcC
Confidence 666542 22 666666666666655 54 366666 6666666665 55555 466666666666666653
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.37 E-value=1.1e-12 Score=106.79 Aligned_cols=123 Identities=16% Similarity=0.101 Sum_probs=103.7
Q ss_pred CCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccccc
Q 043351 61 DEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNL 140 (218)
Q Consensus 61 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~ 140 (218)
..+++++.+..+... .++ .+..+++|+.|.+.++.. ..++. +..+++|++|++++|.
T Consensus 40 l~~L~~L~l~~~~i~-----------~l~-~~~~l~~L~~L~L~~n~i----~~~~~-~~~l~~L~~L~L~~n~------ 96 (308)
T 1h6u_A 40 LDGITTLSAFGTGVT-----------TIE-GVQYLNNLIGLELKDNQI----TDLAP-LKNLTKITELELSGNP------ 96 (308)
T ss_dssp HHTCCEEECTTSCCC-----------CCT-TGGGCTTCCEEECCSSCC----CCCGG-GTTCCSCCEEECCSCC------
T ss_pred cCCcCEEEeeCCCcc-----------Cch-hhhccCCCCEEEccCCcC----CCChh-HccCCCCCEEEccCCc------
Confidence 346888888877663 233 578899999999998643 23333 8899999999999999
Q ss_pred ccccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCc
Q 043351 141 IKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 141 l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
+..+| .++.+++|++|++++|.+.. +|. ++.++ |+.|++++|. +..+|. ++.+++|++|++++|.+
T Consensus 97 l~~~~-~~~~l~~L~~L~l~~n~l~~---~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 97 LKNVS-AIAGLQSIKTLDLTSTQITD---VTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp CSCCG-GGTTCTTCCEEECTTSCCCC---CGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCC
T ss_pred CCCch-hhcCCCCCCEEECCCCCCCC---chh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcC
Confidence 88876 59999999999999999988 876 89999 9999999998 888875 89999999999999974
No 68
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.37 E-value=6e-13 Score=117.30 Aligned_cols=112 Identities=19% Similarity=0.061 Sum_probs=94.8
Q ss_pred hhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCc-ccCCCCCCCeEeccCCCcc
Q 043351 87 ELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPP-NVGKLVHLRYLNLSDKFIE 165 (218)
Q Consensus 87 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~ 165 (218)
.+|..+. +.++.|+++++. .....+..|..+++|++|+|++|. +..+|+ ++++|++|++|+|++|+++
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~---i~~l~~~~f~~l~~L~~L~Ls~N~------i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred ccCCCCC--cCCCEEEeeCCC---CCCCCHHHHhCCCCCCEEECCCCc------CCCcChhHhcCCCCCCEEEccCCcCC
Confidence 4565442 479999999964 344556679999999999999999 888865 6899999999999999998
Q ss_pred ccccccc-cccCce-ecEEeecCCCCCCCCch-hhcCCCCCcEEeccCCCc
Q 043351 166 TTGVFVN-TIIMPC-LSSFQIESCPKLKMLPY-YLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 166 ~~~~lp~-~i~~L~-L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~ 213 (218)
. +|+ .++.+. |++|++++|+ ++.+|. .++++++|++|++++|.+
T Consensus 114 ~---l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 114 S---LALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLI 160 (635)
T ss_dssp E---ECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred C---CCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCcc
Confidence 8 886 468999 9999999998 888875 489999999999999975
No 69
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.36 E-value=1e-12 Score=108.72 Aligned_cols=133 Identities=17% Similarity=0.143 Sum_probs=110.5
Q ss_pred ccCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccc
Q 043351 59 SFDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESN 138 (218)
Q Consensus 59 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~ 138 (218)
.++.+++++.+..+... ...+..+.++++|++|.+.++.. ....|..|..+++|++|++++|.
T Consensus 49 ~~~~~L~~L~l~~n~i~----------~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~Ls~n~---- 111 (353)
T 2z80_A 49 GLTEAVKSLDLSNNRIT----------YISNSDLQRCVNLQALVLTSNGI---NTIEEDSFSSLGSLEHLDLSYNY---- 111 (353)
T ss_dssp TCCTTCCEEECTTSCCC----------EECTTTTTTCTTCCEEECTTSCC---CEECTTTTTTCTTCCEEECCSSC----
T ss_pred cccccCcEEECCCCcCc----------ccCHHHhccCCCCCEEECCCCcc---CccCHhhcCCCCCCCEEECCCCc----
Confidence 34568999999988773 22334788999999999998643 34456678899999999999999
Q ss_pred ccccccCcc-cCCCCCCCeEeccCCCccccccccc--cccCce-ecEEeecCCCCCCCCc-hhhcCCCCCcEEeccCCCc
Q 043351 139 NLIKEIPPN-VGKLVHLRYLNLSDKFIETTGVFVN--TIIMPC-LSSFQIESCPKLKMLP-YYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 139 ~~l~~lp~~-i~~L~~L~~L~l~~~~l~~~~~lp~--~i~~L~-L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~ 213 (218)
+..+|.. ++.+++|++|++++|.+.. +|. .++.++ |++|++++|..+..+| ..++++++|++|++++|.+
T Consensus 112 --l~~~~~~~~~~l~~L~~L~L~~n~l~~---l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 112 --LSNLSSSWFKPLSSLTFLNLLGNPYKT---LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp --CSSCCHHHHTTCTTCSEEECTTCCCSS---SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred --CCcCCHhHhCCCccCCEEECCCCCCcc---cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 8888876 8999999999999999988 887 788899 9999999986577764 5789999999999999974
No 70
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.36 E-value=3.4e-13 Score=118.63 Aligned_cols=120 Identities=15% Similarity=0.142 Sum_probs=102.4
Q ss_pred CceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccc
Q 043351 62 EKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLI 141 (218)
Q Consensus 62 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l 141 (218)
..++.|.+..+.. ..+|. +..+++|+.|.++++.. ..+|..++.+++|+.|+|++|. +
T Consensus 441 ~~L~~L~Ls~n~l-----------~~lp~-~~~l~~L~~L~Ls~N~l----~~lp~~~~~l~~L~~L~Ls~N~------l 498 (567)
T 1dce_A 441 ADVRVLHLAHKDL-----------TVLCH-LEQLLLVTHLDLSHNRL----RALPPALAALRCLEVLQASDNA------L 498 (567)
T ss_dssp TTCSEEECTTSCC-----------SSCCC-GGGGTTCCEEECCSSCC----CCCCGGGGGCTTCCEEECCSSC------C
T ss_pred cCceEEEecCCCC-----------CCCcC-ccccccCcEeecCcccc----cccchhhhcCCCCCEEECCCCC------C
Confidence 3578888888777 34565 89999999999999643 3667789999999999999999 8
Q ss_pred cccCcccCCCCCCCeEeccCCCccccccc--cccccCce-ecEEeecCCCCCCCCchhh----cCCCCCcEEec
Q 043351 142 KEIPPNVGKLVHLRYLNLSDKFIETTGVF--VNTIIMPC-LSSFQIESCPKLKMLPYYL----LQTTKLQELKI 208 (218)
Q Consensus 142 ~~lp~~i~~L~~L~~L~l~~~~l~~~~~l--p~~i~~L~-L~~L~l~~~~~l~~lP~~i----~~L~~L~~L~l 208 (218)
..+| .++.+++|++|++++|.+.. + |..++.++ |+.|++++|+ +..+|+.+ ..+++|+.|++
T Consensus 499 ~~lp-~l~~l~~L~~L~Ls~N~l~~---~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 499 ENVD-GVANLPRLQELLLCNNRLQQ---SAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCG-GGTTCSSCCEEECCSSCCCS---SSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCc-ccCCCCCCcEEECCCCCCCC---CCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 8898 79999999999999999977 7 89999999 9999999998 77777543 44899999864
No 71
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.36 E-value=4.1e-12 Score=111.32 Aligned_cols=133 Identities=14% Similarity=0.104 Sum_probs=94.5
Q ss_pred cCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccc
Q 043351 60 FDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNN 139 (218)
Q Consensus 60 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~ 139 (218)
...+.+++.+..+... +..|..+..+++|+.|.+.++.. ......|..+..+++|+.|++++|.
T Consensus 351 ~l~~L~~L~l~~n~l~----------~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~~~l~~L~~L~l~~N~----- 414 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFT----------DSVFQGCSTLKRLQTLILQRNGL-KNFFKVALMTKNMSSLETLDVSLNS----- 414 (562)
T ss_dssp SCCCCCEEECCSSCCC----------TTTTTTCCSCSSCCEEECCSSCC-CBTTHHHHTTTTCTTCCEEECTTSC-----
T ss_pred CCCCceEEECCCCccc----------cchhhhhcccCCCCEEECCCCCc-CCcccchhhhcCCCCCCEEECCCCc-----
Confidence 4456778888877664 44677888999999999988644 2223556778889999999999998
Q ss_pred cccc-cCcc-cCCC----------------------CCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCc
Q 043351 140 LIKE-IPPN-VGKL----------------------VHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLP 194 (218)
Q Consensus 140 ~l~~-lp~~-i~~L----------------------~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP 194 (218)
+.. +|.. +..+ ++|++|++++|.+.. +|..+..++ |+.|++++|. ++.+|
T Consensus 415 -l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~---ip~~~~~l~~L~~L~L~~N~-l~~l~ 489 (562)
T 3a79_B 415 -LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMS---IPKDVTHLQALQELNVASNQ-LKSVP 489 (562)
T ss_dssp -CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCC---CCTTTTSSCCCSEEECCSSC-CCCCC
T ss_pred -CCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcc---cChhhcCCCCCCEEECCCCC-CCCCC
Confidence 554 6643 3333 456666666666666 777777777 7777777776 66777
Q ss_pred hh-hcCCCCCcEEeccCCCc
Q 043351 195 YY-LLQTTKLQELKIYLCHI 213 (218)
Q Consensus 195 ~~-i~~L~~L~~L~l~~~~~ 213 (218)
.. +..+++|+.|++++|+.
T Consensus 490 ~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 490 DGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp TTSTTTCTTCCCEECCSCCB
T ss_pred HHHHhcCCCCCEEEecCCCc
Confidence 66 67777777777777763
No 72
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.36 E-value=2.3e-13 Score=124.81 Aligned_cols=139 Identities=14% Similarity=0.121 Sum_probs=111.8
Q ss_pred CceeEEEEeeeccchh-------hhhhhhhhhhhhcccc--CCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecC
Q 043351 62 EKIKRLHISCKMYDTV-------HEFSQHLSEELFISSF--DEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISN 132 (218)
Q Consensus 62 ~~~r~l~l~~~~~~~~-------~~~~~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~ 132 (218)
.+.+.|.+..+..... ......+.+.+|..+. ++++|+.|.+.++. ..+.+|..|..+++|+.|++++
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~---l~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP---NMTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT---TCCSCCGGGGGCSSCCEEECTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC---CCccChHHHhCCCCCCEEECcC
Confidence 5688999998876410 0000011124888888 99999999999863 3567788899999999999999
Q ss_pred CCCccccccc--ccCcccCCCC-------CCCeEeccCCCccccccccc--cccCce-ecEEeecCCCCCCCCchhhcCC
Q 043351 133 NSFESNNLIK--EIPPNVGKLV-------HLRYLNLSDKFIETTGVFVN--TIIMPC-LSSFQIESCPKLKMLPYYLLQT 200 (218)
Q Consensus 133 ~~~~~~~~l~--~lp~~i~~L~-------~L~~L~l~~~~l~~~~~lp~--~i~~L~-L~~L~l~~~~~l~~lP~~i~~L 200 (218)
|.. +. .+|..++.+. +|++|++++|.+.. +|. .++++. |+.|++++|. +..+| .++++
T Consensus 525 N~~-----lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~---ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L 594 (876)
T 4ecn_A 525 NRG-----ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE---FPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTN 594 (876)
T ss_dssp CTT-----SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB---CCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTT
T ss_pred CCC-----cccccchHHHHhhhhcccccCCccEEEeeCCcCCc---cCChhhhhcCCCCCEEECCCCC-cccch-hhcCC
Confidence 972 33 5787666555 99999999999988 999 999999 9999999998 77999 89999
Q ss_pred CCCcEEeccCCCc
Q 043351 201 TKLQELKIYLCHI 213 (218)
Q Consensus 201 ~~L~~L~l~~~~~ 213 (218)
++|+.|++++|.+
T Consensus 595 ~~L~~L~Ls~N~l 607 (876)
T 4ecn_A 595 VKLTDLKLDYNQI 607 (876)
T ss_dssp SEESEEECCSSCC
T ss_pred CcceEEECcCCcc
Confidence 9999999999975
No 73
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.36 E-value=8.4e-13 Score=110.57 Aligned_cols=108 Identities=15% Similarity=0.081 Sum_probs=64.5
Q ss_pred cccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccccc
Q 043351 91 SSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVF 170 (218)
Q Consensus 91 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~l 170 (218)
.+..+++|+.|.+.++.. ....|..|..+++|+.|++++|. +..+|..++.+++|++|++++|.+.. +
T Consensus 243 ~l~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~l~~L~~L~L~~n~l~~---~ 310 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNEL---EKIMYHPFVKMQRLERLYISNNR------LVALNLYGQPIPTLKVLDLSHNHLLH---V 310 (390)
T ss_dssp GGGGCTTCSEEECCSSCC---CEEESGGGTTCSSCCEEECCSSC------CCEEECSSSCCTTCCEEECCSSCCCC---C
T ss_pred HHcCCCCccEEECCCCcC---CCcChhHccccccCCEEECCCCc------CcccCcccCCCCCCCEEECCCCccee---c
Confidence 345556666666655422 23334455566666666666666 55566555666666666666666665 6
Q ss_pred cccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCc
Q 043351 171 VNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 171 p~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
|..++.++ |+.|++++|+ +..+| +..+++|+.|++++|++
T Consensus 311 ~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 311 ERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp GGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCE
T ss_pred CccccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCCc
Confidence 66666666 6666666665 55554 45566666666666653
No 74
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.35 E-value=2.7e-12 Score=105.15 Aligned_cols=118 Identities=15% Similarity=0.094 Sum_probs=72.6
Q ss_pred cccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcc---------------ccccccc-CcccCCCCCC
Q 043351 91 SSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFES---------------NNLIKEI-PPNVGKLVHL 154 (218)
Q Consensus 91 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~---------------~~~l~~l-p~~i~~L~~L 154 (218)
.+..+++|+.|.+.++.. ......+..+..+++|++|++++|.... .|.+..+ |..++.+++|
T Consensus 140 ~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 218 (330)
T 1xku_A 140 VFNGLNQMIVVELGTNPL-KSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 218 (330)
T ss_dssp HHTTCTTCCEEECCSSCC-CGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTC
T ss_pred HhcCCccccEEECCCCcC-CccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCC
Confidence 455566666666665432 1112334445555555555555554100 0113333 4556777778
Q ss_pred CeEeccCCCcccccccc-ccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCc
Q 043351 155 RYLNLSDKFIETTGVFV-NTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 155 ~~L~l~~~~l~~~~~lp-~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
++|++++|.+.. ++ ..++.++ |+.|++++|. +..+|..+..+++|++|++++|.+
T Consensus 219 ~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 219 AKLGLSFNSISA---VDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp CEEECCSSCCCE---ECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCC
T ss_pred CEEECCCCcCce---eChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCcC
Confidence 888888877755 54 3677777 8888888776 778887788888888888888764
No 75
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.35 E-value=1.1e-12 Score=115.07 Aligned_cols=102 Identities=18% Similarity=0.092 Sum_probs=51.6
Q ss_pred CCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccccccccc-CcccCCCCCCCeEeccCCCccccccccccc
Q 043351 96 KVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEI-PPNVGKLVHLRYLNLSDKFIETTGVFVNTI 174 (218)
Q Consensus 96 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~~~~lp~~i 174 (218)
++++.|.+.++.. ....|..|..+++|++|++++|. +..+ |..++.+++|++|++++|.+.. +|..
T Consensus 52 ~~L~~L~Ls~N~i---~~~~~~~~~~l~~L~~L~Ls~N~------l~~~~~~~~~~l~~L~~L~Ls~N~l~~---lp~~- 118 (562)
T 3a79_B 52 PRTKALSLSQNSI---SELRMPDISFLSELRVLRLSHNR------IRSLDFHVFLFNQDLEYLDVSHNRLQN---ISCC- 118 (562)
T ss_dssp TTCCEEECCSSCC---CCCCGGGTTTCTTCCEEECCSCC------CCEECTTTTTTCTTCCEEECTTSCCCE---ECSC-
T ss_pred CCcCEEECCCCCc---cccChhhhccCCCccEEECCCCC------CCcCCHHHhCCCCCCCEEECCCCcCCc---cCcc-
Confidence 4555555555421 22233445555555555555555 4444 3445555555555555555555 5554
Q ss_pred cCce-ecEEeecCCCCCCCC--chhhcCCCCCcEEeccCCC
Q 043351 175 IMPC-LSSFQIESCPKLKML--PYYLLQTTKLQELKIYLCH 212 (218)
Q Consensus 175 ~~L~-L~~L~l~~~~~l~~l--P~~i~~L~~L~~L~l~~~~ 212 (218)
.+. |++|++++|. +..+ |..++++++|++|++++|.
T Consensus 119 -~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 119 -PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp -CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred -ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc
Confidence 455 5555555555 4333 2445555555555555554
No 76
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.35 E-value=1.9e-12 Score=99.27 Aligned_cols=106 Identities=25% Similarity=0.369 Sum_probs=89.8
Q ss_pred CCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcc-cCCCCCCCeEeccCCCcccccccccc
Q 043351 95 EKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPN-VGKLVHLRYLNLSDKFIETTGVFVNT 173 (218)
Q Consensus 95 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~~~~lp~~ 173 (218)
.++|+.|.+.++.. ....+..|..+++|++|++++|. +..+|.. ++.+++|++|++++|.+.. +|..
T Consensus 27 ~~~l~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~ 94 (208)
T 2o6s_A 27 PAQTTYLDLETNSL---KSLPNGVFDELTSLTQLYLGGNK------LQSLPNGVFNKLTSLTYLNLSTNQLQS---LPNG 94 (208)
T ss_dssp CTTCSEEECCSSCC---CCCCTTTTTTCTTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSCCCC---CCTT
T ss_pred CCCCcEEEcCCCcc---CcCChhhhcccccCcEEECCCCc------cCccChhhcCCCCCcCEEECCCCcCCc---cCHh
Confidence 46899999998743 34445567899999999999999 8888765 5899999999999999987 8765
Q ss_pred -ccCce-ecEEeecCCCCCCCCchh-hcCCCCCcEEeccCCCc
Q 043351 174 -IIMPC-LSSFQIESCPKLKMLPYY-LLQTTKLQELKIYLCHI 213 (218)
Q Consensus 174 -i~~L~-L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~ 213 (218)
++.+. |+.|++++|. +..+|.. +.++++|++|++++|.+
T Consensus 95 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQL 136 (208)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred HhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCcc
Confidence 58899 9999999998 7787765 68999999999999974
No 77
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.35 E-value=1.5e-12 Score=100.97 Aligned_cols=113 Identities=15% Similarity=0.129 Sum_probs=91.0
Q ss_pred hhhhccccCCCCeeEEEeccccccchhhhH-HHHHhcCCCCcEEEecCCCCcccccccccCc-ccCCCCCCCeEeccCCC
Q 043351 86 EELFISSFDEKVCHSILTLSFISVNSRNLL-QELFGELTCLRALCISNNSFESNNLIKEIPP-NVGKLVHLRYLNLSDKF 163 (218)
Q Consensus 86 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~-~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 163 (218)
..+|..+ .+.++.|.+.++.. .... +..|..+++|++|++++|. +..+|. .++.+++|++|++++|.
T Consensus 24 ~~iP~~~--~~~~~~L~L~~N~l---~~~~~~~~~~~l~~L~~L~L~~N~------i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 24 NKIPEHI--PQYTAELRLNNNEF---TVLEATGIFKKLPQLRKINFSNNK------ITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp SSCCSCC--CTTCSEEECCSSCC---CEECCCCCGGGCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEECCSSC
T ss_pred ccCccCC--CCCCCEEEcCCCcC---CccCchhhhccCCCCCEEECCCCc------CCEECHHHhCCCCCCCEEECCCCc
Confidence 3455544 34568999988643 2221 2447899999999999999 888765 79999999999999999
Q ss_pred ccccccccc-cccCce-ecEEeecCCCCCCCC-chhhcCCCCCcEEeccCCCc
Q 043351 164 IETTGVFVN-TIIMPC-LSSFQIESCPKLKML-PYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 164 l~~~~~lp~-~i~~L~-L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~ 213 (218)
+.. +|. .++.+. |++|++++|. +..+ |..+..+++|++|++++|.+
T Consensus 93 l~~---~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 141 (220)
T 2v70_A 93 LEN---VQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQI 141 (220)
T ss_dssp CCC---CCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCC
T ss_pred cCc---cCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcC
Confidence 977 765 588999 9999999998 6665 67789999999999999975
No 78
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.34 E-value=1e-12 Score=116.13 Aligned_cols=128 Identities=15% Similarity=0.124 Sum_probs=84.8
Q ss_pred CceeEEEEeeeccchhhhhhhhhhhhhhc-cccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccccc
Q 043351 62 EKIKRLHISCKMYDTVHEFSQHLSEELFI-SSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNL 140 (218)
Q Consensus 62 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~ 140 (218)
...+.+.+..+... .+|+ .+..+++|++|.+.++. .....|..|..+++|++|+|++|.
T Consensus 51 ~~l~~l~l~~~~l~-----------~lp~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~------ 110 (597)
T 3oja_B 51 NNQKIVTFKNSTMR-----------KLPAALLDSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMGFNA------ 110 (597)
T ss_dssp CCCSEEEESSCEES-----------EECTHHHHHCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEECCSSC------
T ss_pred CCceEEEeeCCCCC-----------CcCHHHHccCCCCcEEECCCCC---CCCCChHHhcCCCCCCEEECCCCc------
Confidence 45667777666552 2333 34567777777777753 233444467777778888887777
Q ss_pred ccccCc-ccCCCCCCCeEeccCCCccccccccccc-cCce-ecEEeecCCCCCCCCc-hhhcCCCCCcEEeccCCCc
Q 043351 141 IKEIPP-NVGKLVHLRYLNLSDKFIETTGVFVNTI-IMPC-LSSFQIESCPKLKMLP-YYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 141 l~~lp~-~i~~L~~L~~L~l~~~~l~~~~~lp~~i-~~L~-L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~ 213 (218)
+..+|+ .++.+++|++|++++|.+.. +|..+ +.++ |++|++++|. +..+| ..++++++|++|++++|.+
T Consensus 111 l~~~~~~~~~~l~~L~~L~L~~n~l~~---l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 183 (597)
T 3oja_B 111 IRYLPPHVFQNVPLLTVLVLERNDLSS---LPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRL 183 (597)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCCHHHHcCCCCCCEEEeeCCCCCC---CCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCC
Confidence 666654 45777778888887777776 77664 6777 7777777776 44443 4577777777777777763
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.34 E-value=4.1e-12 Score=103.31 Aligned_cols=109 Identities=17% Similarity=0.105 Sum_probs=77.3
Q ss_pred cCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccccccccc-CcccCCC---CCCCeEeccCCCccccc
Q 043351 93 FDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEI-PPNVGKL---VHLRYLNLSDKFIETTG 168 (218)
Q Consensus 93 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L---~~L~~L~l~~~~l~~~~ 168 (218)
..+++|++|.+.++.........+..+..+++|++|++++|. +..+ |+.++.+ ++|++|++++|.++.
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~------l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-- 265 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS------LRATVNPSAPRCMWSSALNSLNLSFAGLEQ-- 265 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC------CCCCCCSCCSSCCCCTTCCCEECCSSCCCS--
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC------CCccchhhHHhccCcCcCCEEECCCCCCCc--
Confidence 344455555555443211111111235778888888888888 6665 7777776 589999999999888
Q ss_pred cccccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCcc
Q 043351 169 VFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHIL 214 (218)
Q Consensus 169 ~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l 214 (218)
+|..+. . |+.|++++|+ +..+|. +..+++|+.|++++|++.
T Consensus 266 -lp~~~~--~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 266 -VPKGLP--AKLRVLDLSSNR-LNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp -CCSCCC--SCCSCEECCSCC-CCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred -hhhhhc--CCCCEEECCCCc-CCCCch-hhhCCCccEEECcCCCCC
Confidence 888775 7 9999999888 777774 678899999999999864
No 80
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.33 E-value=3.8e-12 Score=102.82 Aligned_cols=123 Identities=20% Similarity=0.179 Sum_probs=104.2
Q ss_pred CCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccccc
Q 043351 61 DEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNL 140 (218)
Q Consensus 61 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~ 140 (218)
..+.+.|.+..+... .+ +.+..+++|+.|.+.++.. ..+ +.+..+++|+.|++++|.
T Consensus 89 l~~L~~L~l~~n~l~-----------~~-~~l~~l~~L~~L~L~~n~i----~~~-~~l~~l~~L~~L~l~~n~------ 145 (291)
T 1h6t_A 89 LKNLGWLFLDENKVK-----------DL-SSLKDLKKLKSLSLEHNGI----SDI-NGLVHLPQLESLYLGNNK------ 145 (291)
T ss_dssp CTTCCEEECCSSCCC-----------CG-GGGTTCTTCCEEECTTSCC----CCC-GGGGGCTTCCEEECCSSC------
T ss_pred CCCCCEEECCCCcCC-----------CC-hhhccCCCCCEEECCCCcC----CCC-hhhcCCCCCCEEEccCCc------
Confidence 456888999888763 23 3488999999999998754 222 347899999999999999
Q ss_pred ccccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCc
Q 043351 141 IKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 141 l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
+..+ +.++.+++|++|++++|.+.. +|+ ++.++ |+.|++++|. ++.+| .+..+++|+.|++++|++
T Consensus 146 l~~~-~~l~~l~~L~~L~L~~N~l~~---~~~-l~~l~~L~~L~L~~N~-i~~l~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 146 ITDI-TVLSRLTKLDTLSLEDNQISD---IVP-LAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CCCC-GGGGGCTTCSEEECCSSCCCC---CGG-GTTCTTCCEEECCSSC-CCBCG-GGTTCTTCSEEEEEEEEE
T ss_pred CCcc-hhhccCCCCCEEEccCCcccc---chh-hcCCCccCEEECCCCc-CCCCh-hhccCCCCCEEECcCCcc
Confidence 7777 469999999999999999988 876 89999 9999999998 88888 589999999999999975
No 81
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.33 E-value=1.5e-12 Score=114.84 Aligned_cols=113 Identities=14% Similarity=0.042 Sum_probs=65.8
Q ss_pred hccccCCCCeeEEEeccccccchhh-hHHHHHhcCCCCcEEEecCCCCccccccccc-CcccCCCCCCCeEeccCCCccc
Q 043351 89 FISSFDEKVCHSILTLSFISVNSRN-LLQELFGELTCLRALCISNNSFESNNLIKEI-PPNVGKLVHLRYLNLSDKFIET 166 (218)
Q Consensus 89 ~~~~~~~~~Lr~L~l~~~~~~~~~~-~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~ 166 (218)
|..+..+++|++|.+.++.. .. ..|..+..+++|++|++++|. +..+ |..++.+++|++|++++|.+..
T Consensus 441 ~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 511 (606)
T 3vq2_A 441 DGIFLGLTSLNTLKMAGNSF---KDNTLSNVFANTTNLTFLDLSKCQ------LEQISWGVFDTLHRLQLLNMSHNNLLF 511 (606)
T ss_dssp TTTTTTCTTCCEEECTTCEE---GGGEECSCCTTCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred hhhhcCCCCCCEEECCCCcC---CCcchHHhhccCCCCCEEECCCCc------CCccChhhhcccccCCEEECCCCcCCC
Confidence 33444455555555544321 11 234455566666666666666 4433 4456666666677766666633
Q ss_pred cccccccccCce-ecEEeecCCCCCCCCchhhcCCC-CCcEEeccCCCc
Q 043351 167 TGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTT-KLQELKIYLCHI 213 (218)
Q Consensus 167 ~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~-~L~~L~l~~~~~ 213 (218)
..|..++.++ |++|++++|+ ++.+|..+..++ +|+.|++++|+.
T Consensus 512 --~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 512 --LDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp --EEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCC
T ss_pred --cCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCc
Confidence 2356666666 7777777666 666666666665 477777777663
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.33 E-value=1.2e-12 Score=102.48 Aligned_cols=109 Identities=10% Similarity=0.062 Sum_probs=64.4
Q ss_pred cccCCCCeeEEEeccccccchhhhHHHHHhcCCCCc---EEEecCC-CCcccccccccCc-ccCCCCCCC-eEeccCCCc
Q 043351 91 SSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLR---ALCISNN-SFESNNLIKEIPP-NVGKLVHLR-YLNLSDKFI 164 (218)
Q Consensus 91 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr---~L~L~~~-~~~~~~~l~~lp~-~i~~L~~L~-~L~l~~~~l 164 (218)
.+..+++|+.|.+.++.. ..+|. +..+++|+ +|++++| . +..+|. .+..+++|+ +|++++|.+
T Consensus 100 ~f~~l~~L~~L~l~~n~l----~~lp~-~~~l~~L~~L~~L~l~~N~~------l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGL----KMFPD-LTKVYSTDIFFILEITDNPY------MTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp SEECCTTCCEEEEEEECC----CSCCC-CTTCCBCCSEEEEEEESCTT------CCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred HhCCCCCCCEEeCCCCCC----ccccc-cccccccccccEEECCCCcc------hhhcCcccccchhcceeEEEcCCCCC
Confidence 344455555555544322 12233 44455555 6666665 4 555554 366677777 777777777
Q ss_pred cccccccccccCce-ecEEeecCCCCCCCCch-hhcCC-CCCcEEeccCCCc
Q 043351 165 ETTGVFVNTIIMPC-LSSFQIESCPKLKMLPY-YLLQT-TKLQELKIYLCHI 213 (218)
Q Consensus 165 ~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~-~i~~L-~~L~~L~l~~~~~ 213 (218)
.. +|....... |+.|++++|+.++.+|. .+..+ ++|+.|++++|.+
T Consensus 169 ~~---i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l 217 (239)
T 2xwt_C 169 TS---VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217 (239)
T ss_dssp CE---ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC
T ss_pred cc---cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc
Confidence 66 766655556 77777777744666653 45666 7777777777763
No 83
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.33 E-value=3.3e-12 Score=104.62 Aligned_cols=129 Identities=17% Similarity=0.151 Sum_probs=87.4
Q ss_pred ccCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccc
Q 043351 59 SFDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESN 138 (218)
Q Consensus 59 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~ 138 (218)
..+..++.+.+..+... ...+..+..+++|++|.+.++.. ....|..|..+++|++|++++|.
T Consensus 49 ~~~~~l~~L~L~~n~i~----------~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~Ls~n~---- 111 (330)
T 1xku_A 49 DLPPDTALLDLQNNKIT----------EIKDGDFKNLKNLHTLILINNKI---SKISPGAFAPLVKLERLYLSKNQ---- 111 (330)
T ss_dssp SCCTTCCEEECCSSCCC----------CBCTTTTTTCTTCCEEECCSSCC---CCBCTTTTTTCTTCCEEECCSSC----
T ss_pred cCCCCCeEEECCCCcCC----------EeChhhhccCCCCCEEECCCCcC---CeeCHHHhcCCCCCCEEECCCCc----
Confidence 35567888888887763 22344688899999999988632 34446778889999999999998
Q ss_pred ccccccCcccCCCCCCCeEeccCCCccccccccc-cccCce-ecEEeecCCCCCC---CCchhhcCCCCCcEEeccCCC
Q 043351 139 NLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVN-TIIMPC-LSSFQIESCPKLK---MLPYYLLQTTKLQELKIYLCH 212 (218)
Q Consensus 139 ~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~-~i~~L~-L~~L~l~~~~~l~---~lP~~i~~L~~L~~L~l~~~~ 212 (218)
+..+|..+. ++|++|++++|.+.. +|. .++.+. |+.|++++|. +. ..|..+.++++|++|++++|.
T Consensus 112 --l~~l~~~~~--~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 112 --LKELPEKMP--KTLQELRVHENEITK---VRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp --CSBCCSSCC--TTCCEEECCSSCCCB---BCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred --CCccChhhc--ccccEEECCCCcccc---cCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCc
Confidence 777776554 567777777776655 443 356666 6666666665 32 334455666666666666654
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.33 E-value=4e-12 Score=103.53 Aligned_cols=114 Identities=17% Similarity=0.101 Sum_probs=81.2
Q ss_pred hhccccCCCCeeEEEeccccccchhhhHHHHH--hcCCCCcEEEecCCCCcccccccccC---cc-cCCCCCCCeEeccC
Q 043351 88 LFISSFDEKVCHSILTLSFISVNSRNLLQELF--GELTCLRALCISNNSFESNNLIKEIP---PN-VGKLVHLRYLNLSD 161 (218)
Q Consensus 88 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~--~~l~~Lr~L~L~~~~~~~~~~l~~lp---~~-i~~L~~L~~L~l~~ 161 (218)
.+..+..+++|+.|.+.++.. ......+..+ ..+++|+.|++++|. +..+| .. +..+++|++|++++
T Consensus 165 ~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~~l~~L~~L~L~~N~------l~~~~~~~~~~~~~l~~L~~L~Ls~ 237 (312)
T 1wwl_A 165 SCEQVRVFPALSTLDLSDNPE-LGERGLISALCPLKFPTLQVLALRNAG------METPSGVCSALAAARVQLQGLDLSH 237 (312)
T ss_dssp CTTTCCCCSSCCEEECCSCTT-CHHHHHHHHSCTTSCTTCCEEECTTSC------CCCHHHHHHHHHHTTCCCSEEECTT
T ss_pred hHHHhccCCCCCEEECCCCCc-CcchHHHHHHHhccCCCCCEEECCCCc------CcchHHHHHHHHhcCCCCCEEECCC
Confidence 346777888888888887642 1111134444 788889999998888 66433 22 35778899999999
Q ss_pred CCcccccccc-ccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCc
Q 043351 162 KFIETTGVFV-NTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 162 ~~l~~~~~lp-~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
|.+.. ..| ..+..+. |++|++++|. ++.+|..+. ++|++|++++|.+
T Consensus 238 N~l~~--~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 238 NSLRD--AAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNRL 286 (312)
T ss_dssp SCCCS--SCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSCC
T ss_pred CcCCc--ccchhhhhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCCCC
Confidence 98855 233 3455677 9999999888 778888776 7899999998874
No 85
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=1.9e-12 Score=96.96 Aligned_cols=81 Identities=20% Similarity=0.265 Sum_probs=63.0
Q ss_pred CCCcEEEecCCCCccccccccc-CcccCCCCCCCeEeccCCCccccccccccc-cCce-ecEEeecCCCCCCCCchh-hc
Q 043351 123 TCLRALCISNNSFESNNLIKEI-PPNVGKLVHLRYLNLSDKFIETTGVFVNTI-IMPC-LSSFQIESCPKLKMLPYY-LL 198 (218)
Q Consensus 123 ~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~~~~lp~~i-~~L~-L~~L~l~~~~~l~~lP~~-i~ 198 (218)
+.|++|+|++|. +..+ |..++.+++|++|+|++|.+.. +|..+ ..+. |++|++++|. +..+|.. +.
T Consensus 33 ~~L~~L~Ls~N~------l~~~~~~~~~~l~~L~~L~Ls~N~l~~---i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~ 102 (174)
T 2r9u_A 33 TDKQRLWLNNNQ------ITKLEPGVFDHLVNLQQLYFNSNKLTA---IPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFD 102 (174)
T ss_dssp TTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred CCCcEEEeCCCC------ccccCHHHhcCCcCCCEEECCCCCCCc---cChhHhCCcchhhEEECCCCc-cceeCHHHhc
Confidence 678888888888 6666 5567888888888888888877 77664 6778 8888888777 7777765 77
Q ss_pred CCCCCcEEeccCCCc
Q 043351 199 QTTKLQELKIYLCHI 213 (218)
Q Consensus 199 ~L~~L~~L~l~~~~~ 213 (218)
.+++|++|++++|++
T Consensus 103 ~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 103 NLKSLTHIYLYNNPW 117 (174)
T ss_dssp TCTTCSEEECCSSCB
T ss_pred cccCCCEEEeCCCCc
Confidence 888888888888874
No 86
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.32 E-value=1.6e-12 Score=114.85 Aligned_cols=109 Identities=15% Similarity=0.078 Sum_probs=73.5
Q ss_pred ccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCcccccc
Q 043351 90 ISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGV 169 (218)
Q Consensus 90 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~ 169 (218)
..+..+++|+.|.+.++. .....|..|..+++|+.|+|++|. +..+|..++.+++|++|++++|.+..
T Consensus 248 ~~l~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N~------l~~l~~~~~~l~~L~~L~Ls~N~l~~--- 315 (597)
T 3oja_B 248 AWLLNYPGLVEVDLSYNE---LEKIMYHPFVKMQRLERLYISNNR------LVALNLYGQPIPTLKVLDLSHNHLLH--- 315 (597)
T ss_dssp GGGGGCTTCSEEECCSSC---CCEEESGGGTTCSSCCEEECTTSC------CCEEECSSSCCTTCCEEECCSSCCCC---
T ss_pred hhhccCCCCCEEECCCCc---cCCCCHHHhcCccCCCEEECCCCC------CCCCCcccccCCCCcEEECCCCCCCc---
Confidence 445666677777776653 233445556677777777777777 66667666667777777777777766
Q ss_pred ccccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCc
Q 043351 170 FVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 170 lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
+|..++.++ |+.|++++|. +..+| +..+++|+.|++++|+.
T Consensus 316 i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 316 VERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp CGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCE
T ss_pred cCcccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCCC
Confidence 777777777 7777777766 55555 55667777777777763
No 87
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.32 E-value=1.3e-12 Score=108.68 Aligned_cols=131 Identities=20% Similarity=0.104 Sum_probs=107.3
Q ss_pred cCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccc
Q 043351 60 FDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNN 139 (218)
Q Consensus 60 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~ 139 (218)
...+++.|.+..+... ...+..+..+++|+.|.+.++.. ....+..|..+++|++|+|++|.
T Consensus 62 ~l~~L~~L~L~~N~i~----------~i~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~l~~L~~L~L~~N~----- 123 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLN----------FISSEAFVPVPNLRYLDLSSNHL---HTLDEFLFSDLQALEVLLLYNNH----- 123 (361)
T ss_dssp CCTTCCEEECCSSCCC----------EECTTTTTTCTTCCEEECCSSCC---CEECTTTTTTCTTCCEEECCSSC-----
T ss_pred cccccCEEECCCCcCC----------ccChhhccCCCCCCEEECCCCcC---CcCCHHHhCCCcCCCEEECCCCc-----
Confidence 3467889999888774 33446789999999999999743 34445668899999999999999
Q ss_pred ccccc-CcccCCCCCCCeEeccCCCccccccccccc----cCce-ecEEeecCCCCCCCCch-hhcCCCC--CcEEeccC
Q 043351 140 LIKEI-PPNVGKLVHLRYLNLSDKFIETTGVFVNTI----IMPC-LSSFQIESCPKLKMLPY-YLLQTTK--LQELKIYL 210 (218)
Q Consensus 140 ~l~~l-p~~i~~L~~L~~L~l~~~~l~~~~~lp~~i----~~L~-L~~L~l~~~~~l~~lP~-~i~~L~~--L~~L~l~~ 210 (218)
+..+ |..+..+++|++|+|++|.+.. +|..+ ..+. |+.|++++|. +..+|. .+..++. |+.|++++
T Consensus 124 -i~~~~~~~~~~l~~L~~L~L~~N~l~~---l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 124 -IVVVDRNAFEDMAQLQKLYLSQNQISR---FPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp -CCEECTTTTTTCTTCCEEECCSSCCCS---CCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHHTTEECCS
T ss_pred -ccEECHHHhCCcccCCEEECCCCcCCe---eCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhcceEEecC
Confidence 7776 6789999999999999999998 99876 5788 9999999988 888884 5678877 48899999
Q ss_pred CCc
Q 043351 211 CHI 213 (218)
Q Consensus 211 ~~~ 213 (218)
|+.
T Consensus 199 N~~ 201 (361)
T 2xot_A 199 NPL 201 (361)
T ss_dssp SCE
T ss_pred CCc
Confidence 985
No 88
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.30 E-value=3e-12 Score=105.04 Aligned_cols=108 Identities=21% Similarity=0.210 Sum_probs=57.5
Q ss_pred hccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccc
Q 043351 89 FISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTG 168 (218)
Q Consensus 89 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~ 168 (218)
+..+..+++|++|.+.++. .....|..|..+++|++|++++|. +..+|..+. ++|++|++++|.+..
T Consensus 71 ~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~------l~~l~~~~~--~~L~~L~l~~n~i~~-- 137 (332)
T 2ft3_A 71 KDDFKGLQHLYALVLVNNK---ISKIHEKAFSPLRKLQKLYISKNH------LVEIPPNLP--SSLVELRIHDNRIRK-- 137 (332)
T ss_dssp TTTTTTCTTCCEEECCSSC---CCEECGGGSTTCTTCCEEECCSSC------CCSCCSSCC--TTCCEEECCSSCCCC--
T ss_pred HhHhhCCCCCcEEECCCCc---cCccCHhHhhCcCCCCEEECCCCc------CCccCcccc--ccCCEEECCCCccCc--
Confidence 3345555666666655542 122334445556666666666665 555555444 556666666666554
Q ss_pred ccccc-ccCce-ecEEeecCCCCCC---CCchhhcCCCCCcEEeccCCC
Q 043351 169 VFVNT-IIMPC-LSSFQIESCPKLK---MLPYYLLQTTKLQELKIYLCH 212 (218)
Q Consensus 169 ~lp~~-i~~L~-L~~L~l~~~~~l~---~lP~~i~~L~~L~~L~l~~~~ 212 (218)
+|.. ++.++ |+.|++++|. ++ ..|..+..+ +|++|++++|.
T Consensus 138 -~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 138 -VPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAK 183 (332)
T ss_dssp -CCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred -cCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCC
Confidence 5432 45555 6666666555 32 334444444 56666666554
No 89
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.30 E-value=3.6e-12 Score=104.50 Aligned_cols=123 Identities=15% Similarity=0.113 Sum_probs=98.5
Q ss_pred ceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccccccc
Q 043351 63 KIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIK 142 (218)
Q Consensus 63 ~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~ 142 (218)
+.+.+.+..... ..+|..+ .++++.|.+.++.. ....|..|..+++|++|++++|. +.
T Consensus 34 ~l~~l~~~~~~l-----------~~ip~~~--~~~l~~L~l~~n~i---~~~~~~~~~~l~~L~~L~L~~n~------l~ 91 (332)
T 2ft3_A 34 HLRVVQCSDLGL-----------KAVPKEI--SPDTTLLDLQNNDI---SELRKDDFKGLQHLYALVLVNNK------IS 91 (332)
T ss_dssp ETTEEECCSSCC-----------SSCCSCC--CTTCCEEECCSSCC---CEECTTTTTTCTTCCEEECCSSC------CC
T ss_pred cCCEEECCCCCc-----------cccCCCC--CCCCeEEECCCCcC---CccCHhHhhCCCCCcEEECCCCc------cC
Confidence 355666655554 3455554 36899999988643 34446678899999999999999 77
Q ss_pred cc-CcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCchh-hcCCCCCcEEeccCCCc
Q 043351 143 EI-PPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYY-LLQTTKLQELKIYLCHI 213 (218)
Q Consensus 143 ~l-p~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~ 213 (218)
.+ |..++.+++|++|++++|.+.. +|..+. . |++|++++|. +..+|.. +.++++|++|++++|.+
T Consensus 92 ~~~~~~~~~l~~L~~L~L~~n~l~~---l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 92 KIHEKAFSPLRKLQKLYISKNHLVE---IPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp EECGGGSTTCTTCCEEECCSSCCCS---CCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred ccCHhHhhCcCCCCEEECCCCcCCc---cCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCcc
Confidence 76 6789999999999999999988 998876 7 9999999988 7777754 78999999999999985
No 90
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.30 E-value=5.7e-12 Score=103.68 Aligned_cols=123 Identities=19% Similarity=0.141 Sum_probs=69.9
Q ss_pred CCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccccc
Q 043351 61 DEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNL 140 (218)
Q Consensus 61 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~ 140 (218)
.++++++.+..+... .++ .+..+++|++|.+.++.. ..++. +..+++|++|++++|.
T Consensus 43 l~~L~~L~l~~~~i~-----------~~~-~~~~~~~L~~L~l~~n~i----~~~~~-~~~l~~L~~L~L~~n~------ 99 (347)
T 4fmz_A 43 LESITKLVVAGEKVA-----------SIQ-GIEYLTNLEYLNLNGNQI----TDISP-LSNLVKLTNLYIGTNK------ 99 (347)
T ss_dssp HTTCSEEECCSSCCC-----------CCT-TGGGCTTCCEEECCSSCC----CCCGG-GTTCTTCCEEECCSSC------
T ss_pred cccccEEEEeCCccc-----------cch-hhhhcCCccEEEccCCcc----ccchh-hhcCCcCCEEEccCCc------
Confidence 345667777665552 122 355566677776666432 12222 5666666666666666
Q ss_pred ccccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCC
Q 043351 141 IKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCH 212 (218)
Q Consensus 141 l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~ 212 (218)
+..+| .++.+++|++|++++|.+.. +|. +..++ |+.|++++|..+..+| .+..+++|++|++++|.
T Consensus 100 i~~~~-~~~~l~~L~~L~l~~n~i~~---~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 100 ITDIS-ALQNLTNLRELYLNEDNISD---ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESK 166 (347)
T ss_dssp CCCCG-GGTTCTTCSEEECTTSCCCC---CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSC
T ss_pred ccCch-HHcCCCcCCEEECcCCcccC---chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCC
Confidence 55554 36666666666666666655 555 55566 6666666665344433 35555555555555554
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.30 E-value=1.7e-12 Score=105.64 Aligned_cols=113 Identities=14% Similarity=0.061 Sum_probs=67.8
Q ss_pred hccccCCCCeeEEEeccccccchhhhHH--HHHhcCCCCcEEEecCCCCcccccccccCcc----cCCCCCCCeEeccCC
Q 043351 89 FISSFDEKVCHSILTLSFISVNSRNLLQ--ELFGELTCLRALCISNNSFESNNLIKEIPPN----VGKLVHLRYLNLSDK 162 (218)
Q Consensus 89 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~--~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~----i~~L~~L~~L~l~~~ 162 (218)
+..+..+++|++|+++++.... ...++ ..+..+++|++|++++|. ++.+|.. ++.+++|++|++++|
T Consensus 162 ~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~~~l~~L~~L~Ls~N~------l~~l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 162 CEQVRAFPALTSLDLSDNPGLG-ERGLMAALCPHKFPAIQNLALRNTG------METPTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp TTSCCCCTTCCEEECCSCTTCH-HHHHHTTSCTTSSCCCCSCBCCSSC------CCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred HHHhccCCCCCEEECCCCCCcc-chhhhHHHhhhcCCCCCEEECCCCC------CCchHHHHHHHHhcCCCCCEEECCCC
Confidence 3455566666666666653200 00111 112456667777777766 5544432 356677777777777
Q ss_pred CccccccccccccCc---e-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCc
Q 043351 163 FIETTGVFVNTIIMP---C-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 163 ~l~~~~~lp~~i~~L---~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
.+.. ..|+.++.+ + |++|++++|. ++.+|..+. ++|++|++++|.+
T Consensus 235 ~l~~--~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~--~~L~~L~Ls~N~l 284 (310)
T 4glp_A 235 SLRA--TVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLP--AKLRVLDLSSNRL 284 (310)
T ss_dssp CCCC--CCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCC--SCCSCEECCSCCC
T ss_pred CCCc--cchhhHHhccCcCcCCEEECCCCC-CCchhhhhc--CCCCEEECCCCcC
Confidence 7744 236666655 5 7777777776 667776664 6777777777764
No 92
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.30 E-value=4e-12 Score=108.23 Aligned_cols=38 Identities=13% Similarity=0.120 Sum_probs=18.3
Q ss_pred ccCce-ecEEeecCCCCCCCCchh-hcCCCCCcEEeccCCC
Q 043351 174 IIMPC-LSSFQIESCPKLKMLPYY-LLQTTKLQELKIYLCH 212 (218)
Q Consensus 174 i~~L~-L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~ 212 (218)
+..+. |+.|++++|+ +..+|.. +..+++|+.|++++|+
T Consensus 251 ~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 251 FDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp STTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCC
Confidence 34444 5555555444 4444432 3445555555555554
No 93
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.29 E-value=3.9e-12 Score=110.80 Aligned_cols=130 Identities=12% Similarity=0.093 Sum_probs=101.2
Q ss_pred CCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccccc
Q 043351 61 DEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNL 140 (218)
Q Consensus 61 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~ 140 (218)
..+.+++.+..+... ...|..+..+++|++|.+.++. .....|..|..+++|++|++++|.
T Consensus 49 l~~L~~L~Ls~n~i~----------~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~------ 109 (549)
T 2z81_A 49 CANLQVLILKSSRIN----------TIEGDAFYSLGSLEHLDLSDNH---LSSLSSSWFGPLSSLKYLNLMGNP------ 109 (549)
T ss_dssp CTTCCEEECTTSCCC----------EECTTTTTTCTTCCEEECTTSC---CCSCCHHHHTTCTTCCEEECTTCC------
T ss_pred CCcccEEECCCCCcC----------ccChhhccccccCCEEECCCCc---cCccCHHHhccCCCCcEEECCCCc------
Confidence 457889999888764 3445788999999999999874 345667779999999999999999
Q ss_pred ccc--cCcccCCCCCCCeEeccCCC-cccccccc-ccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCC
Q 043351 141 IKE--IPPNVGKLVHLRYLNLSDKF-IETTGVFV-NTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCH 212 (218)
Q Consensus 141 l~~--lp~~i~~L~~L~~L~l~~~~-l~~~~~lp-~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~ 212 (218)
+.. .|..++.+++|++|++++|. +.. +| ..++.+. |+.|++++|......|..++.+++|++|+++.|.
T Consensus 110 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 110 YQTLGVTSLFPNLTNLQTLRIGNVETFSE---IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp CSSSCSSCSCTTCTTCCEEEEEESSSCCE---ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ccccchhhhhhccCCccEEECCCCccccc---cCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 664 46789999999999999998 655 76 4788888 9999999888444467777666666666555543
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.29 E-value=4.5e-12 Score=112.27 Aligned_cols=105 Identities=22% Similarity=0.190 Sum_probs=68.0
Q ss_pred cccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccccc
Q 043351 91 SSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVF 170 (218)
Q Consensus 91 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~l 170 (218)
.+..+++|+.|.+.++.. ..++ .+..+++|+.|+|++|. +..+ +.++.+++|+.|+|++|.+.. +
T Consensus 104 ~l~~l~~L~~L~Ls~N~l----~~l~-~l~~l~~L~~L~Ls~N~------l~~l-~~l~~l~~L~~L~Ls~N~l~~---~ 168 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNGI----SDIN-GLVHLPQLESLYLGNNK------ITDI-TVLSRLTKLDTLSLEDNQISD---I 168 (605)
T ss_dssp TSTTCTTCCEEECTTSCC----CCCG-GGGGCTTCSEEECCSSC------CCCC-GGGGSCTTCSEEECCSSCCCC---C
T ss_pred hhccCCCCCEEEecCCCC----CCCc-cccCCCccCEEECCCCc------cCCc-hhhcccCCCCEEECcCCcCCC---c
Confidence 455566666666665432 1122 25666677777777766 5555 346777777777777777755 5
Q ss_pred cccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCc
Q 043351 171 VNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 171 p~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
++ +..+. |+.|+|++|. +..+| .+..+++|+.|++++|++
T Consensus 169 ~~-l~~l~~L~~L~Ls~N~-i~~l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 169 VP-LAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp GG-GTTCTTCCEEECCSSC-CCBCG-GGTTCTTCSEEECCSEEE
T ss_pred hh-hccCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEccCCcC
Confidence 55 67777 7777777776 66665 577777777777777764
No 95
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.28 E-value=4.3e-12 Score=94.58 Aligned_cols=82 Identities=17% Similarity=0.234 Sum_probs=64.1
Q ss_pred CCCCcEEEecCCCCccccccccc-CcccCCCCCCCeEeccCCCccccccccccc-cCce-ecEEeecCCCCCCCCchh-h
Q 043351 122 LTCLRALCISNNSFESNNLIKEI-PPNVGKLVHLRYLNLSDKFIETTGVFVNTI-IMPC-LSSFQIESCPKLKMLPYY-L 197 (218)
Q Consensus 122 l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~~~~lp~~i-~~L~-L~~L~l~~~~~l~~lP~~-i 197 (218)
.+.|++|+|++|. +..+ |..++.+++|++|++++|.+.. +|... ..+. |++|++++|. ++.+|.. +
T Consensus 29 ~~~l~~L~L~~N~------i~~~~~~~~~~l~~L~~L~Ls~N~l~~---l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~ 98 (170)
T 3g39_A 29 PTTTQVLYLYDNQ------ITKLEPGVFDRLTQLTRLDLDNNQLTV---LPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAF 98 (170)
T ss_dssp CTTCSEEECCSSC------CCCCCTTTTTTCTTCSEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred CCCCcEEEcCCCc------CCccChhhhcCcccCCEEECCCCCcCc---cChhhccCCCCCCEEECCCCc-cCEeCHHHh
Confidence 3678888888888 7776 5567888888888888888877 77654 6788 8888888877 7777764 7
Q ss_pred cCCCCCcEEeccCCCc
Q 043351 198 LQTTKLQELKIYLCHI 213 (218)
Q Consensus 198 ~~L~~L~~L~l~~~~~ 213 (218)
.++++|++|++++|+.
T Consensus 99 ~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 99 DNLKSLTHIWLLNNPW 114 (170)
T ss_dssp TTCTTCCEEECCSSCB
T ss_pred cCCCCCCEEEeCCCCC
Confidence 7888888888888864
No 96
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.28 E-value=6.2e-12 Score=107.41 Aligned_cols=61 Identities=21% Similarity=0.268 Sum_probs=27.4
Q ss_pred HhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCC
Q 043351 119 FGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCP 188 (218)
Q Consensus 119 ~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~ 188 (218)
|..+++|++|++++|. +..+|. +..+++|++|++++|.+.. ..|..+..+. |+.|++++|.
T Consensus 192 ~~~l~~L~~L~L~~n~------l~~~~~-~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~n~ 253 (452)
T 3zyi_A 192 FEGLFNLKYLNLGMCN------IKDMPN-LTPLVGLEELEMSGNHFPE--IRPGSFHGLSSLKKLWVMNSQ 253 (452)
T ss_dssp TTTCTTCCEEECTTSC------CSSCCC-CTTCTTCCEEECTTSCCSE--ECGGGGTTCTTCCEEECTTSC
T ss_pred ccCCCCCCEEECCCCc------cccccc-ccccccccEEECcCCcCcc--cCcccccCccCCCEEEeCCCc
Confidence 4445555555555554 444432 4444445555555444432 1133344444 4444444443
No 97
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.28 E-value=5.7e-12 Score=108.14 Aligned_cols=130 Identities=17% Similarity=0.102 Sum_probs=87.5
Q ss_pred CCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccccc
Q 043351 61 DEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNL 140 (218)
Q Consensus 61 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~ 140 (218)
..+++.|.+..+... ...|..+..+++|++|.+.++.. ....+..|..+++|++|++++|.
T Consensus 55 l~~L~~L~L~~n~i~----------~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~Ls~n~------ 115 (477)
T 2id5_A 55 FPHLEELELNENIVS----------AVEPGAFNNLFNLRTLGLRSNRL---KLIPLGVFTGLSNLTKLDISENK------ 115 (477)
T ss_dssp CTTCCEEECTTSCCC----------EECTTTTTTCTTCCEEECCSSCC---CSCCTTSSTTCTTCCEEECTTSC------
T ss_pred CCCCCEEECCCCccC----------EeChhhhhCCccCCEEECCCCcC---CccCcccccCCCCCCEEECCCCc------
Confidence 356778888776653 33466778888888888877532 23333446778888888888887
Q ss_pred cccc-CcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCch-hhcCCCCCcEEeccCCC
Q 043351 141 IKEI-PPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPY-YLLQTTKLQELKIYLCH 212 (218)
Q Consensus 141 l~~l-p~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~ 212 (218)
+..+ |..+..+++|++|++++|.+.. ..|..++.+. |+.|++++|. +..+|. .+.++++|+.|++++|.
T Consensus 116 i~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 116 IVILLDYMFQDLYNLKSLEVGDNDLVY--ISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp CCEECTTTTTTCTTCCEEEECCTTCCE--ECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCC
T ss_pred cccCChhHccccccCCEEECCCCccce--eChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCc
Confidence 5544 5567777888888888777754 1245677777 7777777776 666654 35666666666666665
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.27 E-value=3.9e-12 Score=101.31 Aligned_cols=123 Identities=15% Similarity=0.167 Sum_probs=102.1
Q ss_pred CCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccccc
Q 043351 61 DEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNL 140 (218)
Q Consensus 61 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~ 140 (218)
...++.|.+..+... .++. +..+++|+.|.+.++.. ..+|. +.. ++|+.|++++|.
T Consensus 62 l~~L~~L~L~~N~i~-----------~~~~-l~~l~~L~~L~L~~N~l----~~l~~-~~~-~~L~~L~L~~N~------ 117 (263)
T 1xeu_A 62 FTNLKELHLSHNQIS-----------DLSP-LKDLTKLEELSVNRNRL----KNLNG-IPS-ACLSRLFLDNNE------ 117 (263)
T ss_dssp CTTCCEEECCSSCCC-----------CCGG-GTTCSSCCEEECCSSCC----SCCTT-CCC-SSCCEEECCSSC------
T ss_pred CCCCCEEECCCCccC-----------CChh-hccCCCCCEEECCCCcc----CCcCc-ccc-CcccEEEccCCc------
Confidence 457899999988773 3444 88999999999999754 22333 233 899999999999
Q ss_pred ccccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCcc
Q 043351 141 IKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHIL 214 (218)
Q Consensus 141 l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~l 214 (218)
+..+| .++.+++|++|++++|.+.. +| .++.+. |+.|++++|. +..+ ..+..+++|+.|++++|.+.
T Consensus 118 l~~~~-~l~~l~~L~~L~Ls~N~i~~---~~-~l~~l~~L~~L~L~~N~-i~~~-~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 118 LRDTD-SLIHLKNLEILSIRNNKLKS---IV-MLGFLSKLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CSBSG-GGTTCTTCCEEECTTSCCCB---CG-GGGGCTTCCEEECTTSC-CCBC-TTSTTCCCCCEEEEEEEEEE
T ss_pred cCCCh-hhcCcccccEEECCCCcCCC---Ch-HHccCCCCCEEECCCCc-Ccch-HHhccCCCCCEEeCCCCccc
Confidence 88876 59999999999999999988 87 688999 9999999998 7777 57899999999999999753
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.27 E-value=7.8e-12 Score=110.73 Aligned_cols=123 Identities=20% Similarity=0.194 Sum_probs=104.0
Q ss_pred CCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccccc
Q 043351 61 DEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNL 140 (218)
Q Consensus 61 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~ 140 (218)
...++.|.+..+... .+++ +..+++|+.|.+.++.. ..+| .+..+++|+.|+|++|.
T Consensus 64 l~~L~~L~Ls~N~l~-----------~~~~-l~~l~~L~~L~Ls~N~l----~~l~-~l~~l~~L~~L~Ls~N~------ 120 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLT-----------DIKP-LTNLKNLGWLFLDENKI----KDLS-SLKDLKKLKSLSLEHNG------ 120 (605)
T ss_dssp CTTCCEEECTTSCCC-----------CCGG-GGGCTTCCEEECCSSCC----CCCT-TSTTCTTCCEEECTTSC------
T ss_pred CCCCCEEEeeCCCCC-----------CChh-hccCCCCCEEECcCCCC----CCCh-hhccCCCCCEEEecCCC------
Confidence 467889999888763 2333 88999999999999754 2233 48899999999999999
Q ss_pred ccccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCc
Q 043351 141 IKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 141 l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
+..+| .++.+++|+.|+|++|.+.. + ..++.+. |+.|+|++|. +..+|+ +..+++|++|++++|.+
T Consensus 121 l~~l~-~l~~l~~L~~L~Ls~N~l~~---l-~~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 121 ISDIN-GLVHLPQLESLYLGNNKITD---I-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp CCCCG-GGGGCTTCSEEECCSSCCCC---C-GGGGSCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCC
T ss_pred CCCCc-cccCCCccCEEECCCCccCC---c-hhhcccCCCCEEECcCCc-CCCchh-hccCCCCCEEECcCCCC
Confidence 77775 49999999999999999987 7 6689999 9999999998 777775 99999999999999974
No 100
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.27 E-value=5.9e-12 Score=109.98 Aligned_cols=111 Identities=20% Similarity=0.199 Sum_probs=84.7
Q ss_pred cccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccccccc--ccCcccCCCCCCCeEeccCCCccccc
Q 043351 91 SSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIK--EIPPNVGKLVHLRYLNLSDKFIETTG 168 (218)
Q Consensus 91 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~--~lp~~i~~L~~L~~L~l~~~~l~~~~ 168 (218)
.+..+++|++|.+.++. .....|..+..+++|++|++++|. +. .+|..++.+++|++|++++|.+..
T Consensus 416 ~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~------l~~~~~p~~~~~l~~L~~L~l~~n~l~~-- 484 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTH---TRVAFNGIFNGLSSLEVLKMAGNS------FQENFLPDIFTELRNLTFLDLSQCQLEQ-- 484 (570)
T ss_dssp TTTTCTTCCEEECTTSC---CEECCTTTTTTCTTCCEEECTTCE------EGGGEECSCCTTCTTCCEEECTTSCCCE--
T ss_pred hhhcCCCCCEEeCcCCc---ccccchhhhhcCCcCcEEECcCCc------CccccchhhhhcccCCCEEECCCCcccc--
Confidence 45667777777776653 233456667788888888888887 54 578888889999999999998855
Q ss_pred cccccccCce-ecEEeecCCCCCCCCch-hhcCCCCCcEEeccCCCc
Q 043351 169 VFVNTIIMPC-LSSFQIESCPKLKMLPY-YLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 169 ~lp~~i~~L~-L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~ 213 (218)
..|..++.++ |+.|++++|+ +..+|+ .+.++++|+.|++++|++
T Consensus 485 ~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 485 LSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp ECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CChhhhhcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCcc
Confidence 2377888888 9999999887 666654 578889999999998874
No 101
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.27 E-value=9.6e-12 Score=102.31 Aligned_cols=106 Identities=15% Similarity=0.086 Sum_probs=64.2
Q ss_pred ccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCcccccccc
Q 043351 92 SFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFV 171 (218)
Q Consensus 92 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp 171 (218)
+..+++|+.|.+.++.. ..+ +.+..+++|+.|++++|. +..+| .+..+++|++|++++|.+.. ..|
T Consensus 239 ~~~l~~L~~L~l~~n~l----~~~-~~~~~l~~L~~L~l~~n~------l~~~~-~~~~l~~L~~L~L~~n~l~~--~~~ 304 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQI----SDI-NAVKDLTKLKMLNVGSNQ------ISDIS-VLNNLSQLNSLFLNNNQLGN--EDM 304 (347)
T ss_dssp GTTCTTCCEEECCSSCC----CCC-GGGTTCTTCCEEECCSSC------CCCCG-GGGGCTTCSEEECCSSCCCG--GGH
T ss_pred hhcCCCCCEEECCCCcc----CCC-hhHhcCCCcCEEEccCCc------cCCCh-hhcCCCCCCEEECcCCcCCC--cCh
Confidence 55666666666665432 111 235566666666666666 55554 36666777777777776633 234
Q ss_pred ccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCc
Q 043351 172 NTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 172 ~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
..++.++ |+.|++++|+ +..+|+ +..+++|+.|++++|++
T Consensus 305 ~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 305 EVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp HHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC--
T ss_pred hHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhcc
Confidence 5566677 7777777776 555554 66677777777777764
No 102
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.26 E-value=4.3e-12 Score=101.37 Aligned_cols=107 Identities=14% Similarity=0.124 Sum_probs=60.9
Q ss_pred CceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccc
Q 043351 62 EKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLI 141 (218)
Q Consensus 62 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l 141 (218)
.+++.+.+..+... ...+..+..+++|++|.+.++.. ....+..|..+++|++|++++|. +
T Consensus 52 ~~L~~L~l~~n~l~----------~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~l~~n~------l 112 (276)
T 2z62_A 52 PELQVLDLSRCEIQ----------TIEDGAYQSLSHLSTLILTGNPI---QSLALGAFSGLSSLQKLVAVETN------L 112 (276)
T ss_dssp TTCSEEECTTCCCC----------EECTTTTTTCTTCCEEECTTCCC---CEECTTTTTTCTTCCEEECTTSC------C
T ss_pred cCCcEEECCCCcCC----------ccCHHHccCCcCCCEEECCCCcc---CccChhhhcCCccccEEECCCCC------c
Confidence 45677777666553 22234566667777777766532 22333445666666666666666 4
Q ss_pred cccCc-ccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCC
Q 043351 142 KEIPP-NVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCP 188 (218)
Q Consensus 142 ~~lp~-~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~ 188 (218)
..++. .++.+++|++|++++|.+.. ..+|..++.+. |++|++++|.
T Consensus 113 ~~~~~~~~~~l~~L~~L~l~~n~l~~-~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 113 ASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp CCSTTCCCTTCTTCCEEECCSSCCCC-CCCCGGGGGCTTCCEEECCSSC
T ss_pred cccCchhcccCCCCCEEECcCCccce-ecCchhhccCCCCCEEECCCCC
Confidence 44443 45666666666666666532 11355566666 6666666655
No 103
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.26 E-value=3.4e-14 Score=108.43 Aligned_cols=110 Identities=17% Similarity=0.098 Sum_probs=89.3
Q ss_pred hhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCcccc
Q 043351 88 LFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETT 167 (218)
Q Consensus 88 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~ 167 (218)
+|..+..+++|+.|.+.++.. ..+| .+..+++|++|++++|. +..+|..++.+++|++|++++|.+..
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l----~~l~-~~~~l~~L~~L~l~~n~------l~~l~~~~~~~~~L~~L~L~~N~l~~- 107 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNI----EKIS-SLSGMENLRILSLGRNL------IKKIENLDAVADTLEELWISYNQIAS- 107 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEE----SCCC-CHHHHTTCCEEEEEEEE------ECSCSSHHHHHHHCSEEEEEEEECCC-
T ss_pred hhHHHhcCCCCCEEECCCCCC----cccc-ccccCCCCCEEECCCCC------cccccchhhcCCcCCEEECcCCcCCc-
Confidence 444777888999999988643 2245 57788899999999998 88888877778889999999999877
Q ss_pred ccccccccCce-ecEEeecCCCCCCCCch--hhcCCCCCcEEeccCCCc
Q 043351 168 GVFVNTIIMPC-LSSFQIESCPKLKMLPY--YLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 168 ~~lp~~i~~L~-L~~L~l~~~~~l~~lP~--~i~~L~~L~~L~l~~~~~ 213 (218)
+| .++.++ |+.|++++|. +..+|. .+..+++|++|++++|++
T Consensus 108 --l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 108 --LS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp --HH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred --CC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence 87 588888 9999999887 777664 678899999999998874
No 104
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.25 E-value=5.5e-12 Score=103.27 Aligned_cols=118 Identities=17% Similarity=0.103 Sum_probs=69.6
Q ss_pred hhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCC-CCcccccccc--cCcccCCCC-CCCeEeccCC
Q 043351 87 ELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNN-SFESNNLIKE--IPPNVGKLV-HLRYLNLSDK 162 (218)
Q Consensus 87 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~-~~~~~~~l~~--lp~~i~~L~-~L~~L~l~~~ 162 (218)
..+..+..+++|+.|.+.++.. .....++..+..+++|+.|++++| . +.. +|..++.++ +|++|++++|
T Consensus 133 ~~~~~l~~~~~L~~L~L~~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~------l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 133 PIVNTLAKNSNLVRLNLSGCSG-FSEFALQTLLSSCSRLDELNLSWCFD------FTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp HHHHHHTTCTTCSEEECTTCBS-CCHHHHHHHHHHCTTCCEEECCCCTT------CCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred HHHHHHhcCCCCCEEECCCCCC-CCHHHHHHHHhcCCCCCEEcCCCCCC------cChHHHHHHHHhcccCCCEEEeCCC
Confidence 3455566677777777766521 111235555667777777777777 4 442 455556666 6777777766
Q ss_pred C--ccccccccccccCce-ecEEeecCCCCC-CCCchhhcCCCCCcEEeccCCC
Q 043351 163 F--IETTGVFVNTIIMPC-LSSFQIESCPKL-KMLPYYLLQTTKLQELKIYLCH 212 (218)
Q Consensus 163 ~--l~~~~~lp~~i~~L~-L~~L~l~~~~~l-~~lP~~i~~L~~L~~L~l~~~~ 212 (218)
. +. .+.+|..++.++ |+.|++++|..+ ...|..+.++++|++|++++|.
T Consensus 206 ~~~~~-~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 206 RKNLQ-KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp GGGSC-HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred cccCC-HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 3 21 022566566666 777777766633 2445566666777777776664
No 105
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.24 E-value=1.2e-11 Score=109.12 Aligned_cols=116 Identities=9% Similarity=0.023 Sum_probs=79.0
Q ss_pred hhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccccccccc-CcccCCCCCCCeEeccCCCccc
Q 043351 88 LFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEI-PPNVGKLVHLRYLNLSDKFIET 166 (218)
Q Consensus 88 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~ 166 (218)
.+..+..+++|+.|.+.++.........+..+..+++|++|++++|. +..+ |..++.+++|++|++++|.+.
T Consensus 441 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~N~l~- 513 (606)
T 3t6q_A 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD------LSSIDQHAFTSLKMMNHVDLSHNRLT- 513 (606)
T ss_dssp CTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECCSSCCC-
T ss_pred CHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc------cCccChhhhccccCCCEEECCCCccC-
Confidence 45556667777777777653311001122446777788888888887 5555 567788888888888888873
Q ss_pred cccccccccCce-ecEEeecCCCCCCCC-chhhcCCCCCcEEeccCCCc
Q 043351 167 TGVFVNTIIMPC-LSSFQIESCPKLKML-PYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 167 ~~~lp~~i~~L~-L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~ 213 (218)
+..|..+..+. | .|++++|. +..+ |..+..+++|+.|++++|+.
T Consensus 514 -~~~~~~l~~l~~L-~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 514 -SSSIEALSHLKGI-YLNLASNH-ISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp -GGGGGGGTTCCSC-EEECCSSC-CCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred -cCChhHhCccccc-EEECcCCc-ccccCHhhcccCCCCCEEeCCCCCc
Confidence 33567788888 8 88888887 4444 44567788888888888874
No 106
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.22 E-value=1.3e-11 Score=113.23 Aligned_cols=116 Identities=16% Similarity=0.064 Sum_probs=95.9
Q ss_pred hhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccccccccc-CcccCCCCCCCeEeccCCCc
Q 043351 86 EELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEI-PPNVGKLVHLRYLNLSDKFI 164 (218)
Q Consensus 86 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L~~L~l~~~~l 164 (218)
..+|. -.++++.|+++++.. ....|..|..+++|++|++++|.. +..+ |..++++++|++|+|++|.+
T Consensus 17 ~~vP~---lp~~l~~LdLs~N~i---~~i~~~~~~~l~~L~~LdLs~n~~-----~~~i~~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 17 TQVPQ---VLNTTERLLLSFNYI---RTVTASSFPFLEQLQLLELGSQYT-----PLTIDKEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp SCCCS---SCTTCCEEEEESCCC---CEECSSSCSSCCSCSEEEECTTCC-----CCEECTTTTSSCTTCCEEECTTCCC
T ss_pred CCCCC---CCCCcCEEECCCCcC---CccChhHCcccccCeEEeCCCCCC-----ccccCHHHhcCCCCCCEEECCCCcC
Confidence 34554 457899999998743 445567789999999999999964 6777 77899999999999999999
Q ss_pred cccccccccccCce-ecEEeecCCCCCCCCchh--hcCCCCCcEEeccCCCcc
Q 043351 165 ETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYY--LLQTTKLQELKIYLCHIL 214 (218)
Q Consensus 165 ~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~--i~~L~~L~~L~l~~~~~l 214 (218)
.. ..|..++.+. |++|++++|.....+|.. ++++++|++|++++|.+.
T Consensus 86 ~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~ 136 (844)
T 3j0a_A 86 YF--LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR 136 (844)
T ss_dssp CE--ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCC
T ss_pred cc--cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccc
Confidence 65 2488999999 999999999844446665 899999999999999753
No 107
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.22 E-value=2.2e-11 Score=104.42 Aligned_cols=118 Identities=17% Similarity=0.155 Sum_probs=73.6
Q ss_pred CCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccccc
Q 043351 61 DEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNL 140 (218)
Q Consensus 61 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~ 140 (218)
..+++++.+..+... .+| .+..+++|+.|.+.++.. ..+| ++.+++|++|++++|.
T Consensus 41 l~~L~~L~Ls~n~l~-----------~~~-~l~~l~~L~~L~Ls~n~l----~~~~--~~~l~~L~~L~Ls~N~------ 96 (457)
T 3bz5_A 41 LATLTSLDCHNSSIT-----------DMT-GIEKLTGLTKLICTSNNI----TTLD--LSQNTNLTYLACDSNK------ 96 (457)
T ss_dssp HTTCCEEECCSSCCC-----------CCT-TGGGCTTCSEEECCSSCC----SCCC--CTTCTTCSEEECCSSC------
T ss_pred cCCCCEEEccCCCcc-----------cCh-hhcccCCCCEEEccCCcC----CeEc--cccCCCCCEEECcCCC------
Confidence 356777877776653 233 566777777777777543 1122 5667777777777777
Q ss_pred ccccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCC
Q 043351 141 IKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCH 212 (218)
Q Consensus 141 l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~ 212 (218)
+..+| ++.+++|++|++++|.+.. +| ++.++ |+.|++++|. ++.+| ++++++|++|++++|.
T Consensus 97 l~~~~--~~~l~~L~~L~L~~N~l~~---l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 97 LTNLD--VTPLTKLTYLNCDTNKLTK---LD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNK 159 (457)
T ss_dssp CSCCC--CTTCTTCCEEECCSSCCSC---CC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCS
T ss_pred Cceee--cCCCCcCCEEECCCCcCCe---ec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCC
Confidence 55554 6667777777777776655 54 56666 6666666665 55553 4555555555555553
No 108
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.20 E-value=3.4e-11 Score=107.60 Aligned_cols=111 Identities=15% Similarity=0.078 Sum_probs=64.3
Q ss_pred hccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCc---------ccCCCCCCCeEec
Q 043351 89 FISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPP---------NVGKLVHLRYLNL 159 (218)
Q Consensus 89 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~---------~i~~L~~L~~L~l 159 (218)
|..+..+++|+.|.+.++.. ....+..|..+++|++|++++|. +..++. .++.+++|++|++
T Consensus 473 p~~~~~l~~L~~L~Ls~N~l---~~i~~~~~~~l~~L~~L~Ls~N~------l~~~~~~~~~~~~~~~~~~l~~L~~L~L 543 (680)
T 1ziw_A 473 PSPFQPLRNLTILDLSNNNI---ANINDDMLEGLEKLEILDLQHNN------LARLWKHANPGGPIYFLKGLSHLHILNL 543 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSC------CGGGGSTTSTTSCCCTTTTCTTCCEEEC
T ss_pred CcccccCCCCCEEECCCCCC---CcCChhhhccccccCEEeCCCCC------ccccchhhccCCcchhhcCCCCCCEEEC
Confidence 34444555555555555421 22333445556666666666665 443321 2456666666666
Q ss_pred cCCCcccccccccc-ccCce-ecEEeecCCCCCCCCchh-hcCCCCCcEEeccCCC
Q 043351 160 SDKFIETTGVFVNT-IIMPC-LSSFQIESCPKLKMLPYY-LLQTTKLQELKIYLCH 212 (218)
Q Consensus 160 ~~~~l~~~~~lp~~-i~~L~-L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~ 212 (218)
++|.+.. +|.. ++.+. |+.|++++|. ++.+|.. +..+++|+.|++++|.
T Consensus 544 ~~N~l~~---i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 544 ESNGFDE---IPVEVFKDLFELKIIDLGLNN-LNTLPASVFNNQVSLKSLNLQKNL 595 (680)
T ss_dssp CSSCCCC---CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCCCCCC---CCHHHcccccCcceeECCCCC-CCcCCHhHhCCCCCCCEEECCCCc
Confidence 6666666 6653 56666 7777777666 6666654 3567777777777775
No 109
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.20 E-value=1.8e-11 Score=93.02 Aligned_cols=107 Identities=21% Similarity=0.205 Sum_probs=91.2
Q ss_pred ccCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccc
Q 043351 59 SFDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESN 138 (218)
Q Consensus 59 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~ 138 (218)
.++..++.|.+..+.. ..+|..+..+++|+.|.+.++.. ....+..|..+++|+.|+|++|.
T Consensus 28 ~~~~~l~~L~L~~n~i-----------~~ip~~~~~l~~L~~L~Ls~N~i---~~i~~~~f~~l~~L~~L~Ls~N~---- 89 (193)
T 2wfh_A 28 GIPRDVTELYLDGNQF-----------TLVPKELSNYKHLTLIDLSNNRI---STLSNQSFSNMTQLLTLILSYNR---- 89 (193)
T ss_dssp CCCTTCCEEECCSSCC-----------CSCCGGGGGCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSC----
T ss_pred CCCCCCCEEECCCCcC-----------chhHHHhhcccCCCEEECCCCcC---CEeCHhHccCCCCCCEEECCCCc----
Confidence 4567899999998887 45678899999999999998743 44556678999999999999999
Q ss_pred ccccccCc-ccCCCCCCCeEeccCCCcccccccccc-ccCce-ecEEeecCCC
Q 043351 139 NLIKEIPP-NVGKLVHLRYLNLSDKFIETTGVFVNT-IIMPC-LSSFQIESCP 188 (218)
Q Consensus 139 ~~l~~lp~-~i~~L~~L~~L~l~~~~l~~~~~lp~~-i~~L~-L~~L~l~~~~ 188 (218)
+..+|+ .++.+++|++|++++|.+.. +|.. +..+. |+.|++++|+
T Consensus 90 --l~~i~~~~f~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 --LRCIPPRTFDGLKSLRLLSLHGNDISV---VPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp --CCBCCTTTTTTCTTCCEEECCSSCCCB---CCTTTTTTCTTCCEEECCSSC
T ss_pred --cCEeCHHHhCCCCCCCEEECCCCCCCe---eChhhhhcCccccEEEeCCCC
Confidence 888764 68999999999999999988 8874 78899 9999999887
No 110
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.19 E-value=1.7e-11 Score=92.98 Aligned_cols=108 Identities=19% Similarity=0.117 Sum_probs=89.3
Q ss_pred ccCCceeEEEEeeeccchhhhhhhhhhhhhhc--cccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCc
Q 043351 59 SFDEKIKRLHISCKMYDTVHEFSQHLSEELFI--SSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFE 136 (218)
Q Consensus 59 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~ 136 (218)
.++..++.+.+..+... .++. .+..+++|+.|.+.++. .....|..|..+++|++|+|++|.
T Consensus 26 ~~~~~l~~L~l~~n~i~-----------~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N~-- 89 (192)
T 1w8a_A 26 DIPLHTTELLLNDNELG-----------RISSDGLFGRLPHLVKLELKRNQ---LTGIEPNAFEGASHIQELQLGENK-- 89 (192)
T ss_dssp CCCTTCSEEECCSCCCC-----------SBCCSCSGGGCTTCCEEECCSSC---CCCBCTTTTTTCTTCCEEECCSCC--
T ss_pred CCCCCCCEEECCCCcCC-----------ccCCccccccCCCCCEEECCCCC---CCCcCHhHcCCcccCCEEECCCCc--
Confidence 34558899999988773 3443 38899999999999974 345557789999999999999999
Q ss_pred ccccccccCc-ccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCC
Q 043351 137 SNNLIKEIPP-NVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCP 188 (218)
Q Consensus 137 ~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~ 188 (218)
+..+|. .++.+++|++|++++|.+.. ..|..++.+. |+.|++++|+
T Consensus 90 ----l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 90 ----IKEISNKMFLGLHQLKTLNLYDNQISC--VMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp ----CCEECSSSSTTCTTCCEEECCSSCCCE--ECTTSSTTCTTCCEEECTTCC
T ss_pred ----CCccCHHHhcCCCCCCEEECCCCcCCe--eCHHHhhcCCCCCEEEeCCCC
Confidence 777764 48999999999999999954 3578899999 9999999987
No 111
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.19 E-value=1.8e-11 Score=105.71 Aligned_cols=106 Identities=14% Similarity=0.055 Sum_probs=88.3
Q ss_pred CCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccc-cCcccC-CCCCCCeEeccCCCcccccccc
Q 043351 94 DEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKE-IPPNVG-KLVHLRYLNLSDKFIETTGVFV 171 (218)
Q Consensus 94 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~-lp~~i~-~L~~L~~L~l~~~~l~~~~~lp 171 (218)
.+++|+.|.+.++.. ....|..+..+++|++|++++|. +.. .|..+. .+++|++|++++|.+.. +|
T Consensus 118 ~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~Ls~N~------l~~~~~~~l~~~l~~L~~L~Ls~N~l~~---~~ 185 (487)
T 3oja_A 118 RGQGKKNIYLANNKI---TMLRDLDEGCRSRVQYLDLKLNE------IDTVNFAELAASSDTLEHLNLQYNFIYD---VK 185 (487)
T ss_dssp CCSSCEEEECCSSCC---CSGGGBCGGGGSSEEEEECTTSC------CCEEEGGGGGGGTTTCCEEECTTSCCCE---EE
T ss_pred ccCCCCEEECCCCCC---CCCCchhhcCCCCCCEEECCCCC------CCCcChHHHhhhCCcccEEecCCCcccc---cc
Confidence 467888998888643 44556668889999999999999 555 566665 79999999999999987 76
Q ss_pred ccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCc
Q 043351 172 NTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 172 ~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
.. ..++ |+.|++++|. +..+|+.++.+++|+.|++++|.+
T Consensus 186 ~~-~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l 226 (487)
T 3oja_A 186 GQ-VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKL 226 (487)
T ss_dssp CC-CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCC
T ss_pred cc-ccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcC
Confidence 64 4588 9999999998 888988999999999999999974
No 112
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.19 E-value=1.7e-11 Score=91.67 Aligned_cols=97 Identities=16% Similarity=0.160 Sum_probs=80.2
Q ss_pred hhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcc-cCCCCCCCeEeccCCCc
Q 043351 86 EELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPN-VGKLVHLRYLNLSDKFI 164 (218)
Q Consensus 86 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-i~~L~~L~~L~l~~~~l 164 (218)
..+|..+. +.|+.|.+.++. .....|..|..+++|++|+|++|. +..+|.. ++.+++|++|++++|.+
T Consensus 25 ~~iP~~~~--~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N~------l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 25 ASVPAGIP--TDKQRLWLNNNQ---ITKLEPGVFDHLVNLQQLYFNSNK------LTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SSCCSCCC--TTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CccCCCcC--CCCcEEEeCCCC---ccccCHHHhcCCcCCCEEECCCCC------CCccChhHhCCcchhhEEECCCCcc
Confidence 44566553 889999999874 344557778999999999999999 8889876 48999999999999999
Q ss_pred ccccccccc-ccCce-ecEEeecCCCCCCCCchhh
Q 043351 165 ETTGVFVNT-IIMPC-LSSFQIESCPKLKMLPYYL 197 (218)
Q Consensus 165 ~~~~~lp~~-i~~L~-L~~L~l~~~~~l~~lP~~i 197 (218)
.. +|.. +..+. |+.|++++|+ +...|..+
T Consensus 94 ~~---l~~~~~~~l~~L~~L~L~~N~-~~c~~~~~ 124 (174)
T 2r9u_A 94 KS---IPRGAFDNLKSLTHIYLYNNP-WDCECRDI 124 (174)
T ss_dssp CC---CCTTTTTTCTTCSEEECCSSC-BCTTBGGG
T ss_pred ce---eCHHHhccccCCCEEEeCCCC-cccccccH
Confidence 88 8876 88899 9999999998 66666543
No 113
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.18 E-value=2.1e-11 Score=99.45 Aligned_cols=106 Identities=14% Similarity=0.073 Sum_probs=86.7
Q ss_pred CCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccccccccc-Cccc-CCCCCCCeEeccCCCcccccccc
Q 043351 94 DEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEI-PPNV-GKLVHLRYLNLSDKFIETTGVFV 171 (218)
Q Consensus 94 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i-~~L~~L~~L~l~~~~l~~~~~lp 171 (218)
.+++|+.|.+.++.. ....+..+..+++|++|++++|. +..+ |..+ +.+++|++|++++|.+.. +|
T Consensus 118 ~~~~L~~L~l~~N~l---~~~~~~~~~~l~~L~~L~Ls~N~------l~~~~~~~~~~~l~~L~~L~L~~N~l~~---~~ 185 (317)
T 3o53_A 118 RGQGKKNIYLANNKI---TMLRDLDEGCRSRVQYLDLKLNE------IDTVNFAELAASSDTLEHLNLQYNFIYD---VK 185 (317)
T ss_dssp CCSSCEEEECCSSCC---CSGGGBCTGGGSSEEEEECTTSC------CCEEEGGGGGGGTTTCCEEECTTSCCCE---EE
T ss_pred ccCCCCEEECCCCCC---CCccchhhhccCCCCEEECCCCC------CCcccHHHHhhccCcCCEEECCCCcCcc---cc
Confidence 367788888887643 33445567889999999999999 6665 4445 478999999999999988 86
Q ss_pred ccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCc
Q 043351 172 NTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 172 ~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
... .+. |+.|++++|. +..+|..+..+++|++|++++|.+
T Consensus 186 ~~~-~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l 226 (317)
T 3o53_A 186 GQV-VFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKL 226 (317)
T ss_dssp CCC-CCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCC
T ss_pred ccc-ccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCcc
Confidence 644 578 9999999998 888998899999999999999975
No 114
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.17 E-value=1.4e-11 Score=103.03 Aligned_cols=117 Identities=15% Similarity=0.203 Sum_probs=76.4
Q ss_pred ccccCCCCeeEEEecccccc--chhhhHHHHHhcCCCCcEEEecCCCCcccccc-----cccCcccCCCCCCCeEeccCC
Q 043351 90 ISSFDEKVCHSILTLSFISV--NSRNLLQELFGELTCLRALCISNNSFESNNLI-----KEIPPNVGKLVHLRYLNLSDK 162 (218)
Q Consensus 90 ~~~~~~~~Lr~L~l~~~~~~--~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l-----~~lp~~i~~L~~L~~L~l~~~ 162 (218)
..+..+++|++|.+.++... ......|..+..+++|++|+|++|. + ..+|..+..+++|++|++++|
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~------l~~~g~~~l~~~l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT------FTHLGSSALAIALKSWPNLRELGLNDC 254 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC------CHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC------CCcHHHHHHHHHHccCCCcCEEECCCC
Confidence 34556667777777775431 0011233356677777777777777 5 556777777778888888887
Q ss_pred Cccccc--cccccc--cCce-ecEEeecCCCCCCC-----Cchhh-cCCCCCcEEeccCCCc
Q 043351 163 FIETTG--VFVNTI--IMPC-LSSFQIESCPKLKM-----LPYYL-LQTTKLQELKIYLCHI 213 (218)
Q Consensus 163 ~l~~~~--~lp~~i--~~L~-L~~L~l~~~~~l~~-----lP~~i-~~L~~L~~L~l~~~~~ 213 (218)
.+...| .+|..+ +.++ |++|++++|. +.. +|..+ .++++|++|++++|.+
T Consensus 255 ~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp CCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred CCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 774411 135555 3477 8888888777 554 77776 5678888888888764
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.17 E-value=5.1e-11 Score=104.73 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=61.5
Q ss_pred cCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccccccccccCcee-------cEEeecCCCCCCCC
Q 043351 121 ELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPCL-------SSFQIESCPKLKML 193 (218)
Q Consensus 121 ~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~L-------~~L~l~~~~~l~~l 193 (218)
.+++|++|++++|. +..+|. ++ ++|++|++++|.+.. +|. +.. .| +.|++++|. ++.+
T Consensus 158 ~l~~L~~L~Ls~N~------L~~lp~-l~--~~L~~L~Ls~N~L~~---lp~-~~~-~L~~~~~~L~~L~Ls~N~-l~~l 222 (571)
T 3cvr_A 158 LPTSLEVLSVRNNQ------LTFLPE-LP--ESLEALDVSTNLLES---LPA-VPV-RNHHSEETEIFFRCRENR-ITHI 222 (571)
T ss_dssp CCTTCCEEECCSSC------CSCCCC-CC--TTCCEEECCSSCCSS---CCC-CC---------CCEEEECCSSC-CCCC
T ss_pred cCCCcCEEECCCCC------CCCcch-hh--CCCCEEECcCCCCCc---hhh-HHH-hhhcccccceEEecCCCc-ceec
Confidence 45567777777776 666776 55 788888888888877 887 542 25 999999888 8899
Q ss_pred chhhcCCCCCcEEeccCCCcc
Q 043351 194 PYYLLQTTKLQELKIYLCHIL 214 (218)
Q Consensus 194 P~~i~~L~~L~~L~l~~~~~l 214 (218)
|..+.++++|+.|++++|++-
T Consensus 223 p~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 223 PENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp CGGGGGSCTTEEEECCSSSCC
T ss_pred CHHHhcCCCCCEEEeeCCcCC
Confidence 999989999999999999853
No 116
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.16 E-value=1.3e-11 Score=101.01 Aligned_cols=111 Identities=13% Similarity=0.118 Sum_probs=48.6
Q ss_pred cCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCC-Ccccccccc
Q 043351 93 FDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDK-FIETTGVFV 171 (218)
Q Consensus 93 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~-~l~~~~~lp 171 (218)
..+++|+.|.+.++.. ....++..+..+++|++|++++|.. ....|..++.+++|++|++++| .+.. ..+|
T Consensus 90 ~~~~~L~~L~L~~~~l--~~~~~~~~~~~~~~L~~L~L~~~~l-----~~~~~~~l~~~~~L~~L~L~~~~~l~~-~~l~ 161 (336)
T 2ast_B 90 FSPFRVQHMDLSNSVI--EVSTLHGILSQCSKLQNLSLEGLRL-----SDPIVNTLAKNSNLVRLNLSGCSGFSE-FALQ 161 (336)
T ss_dssp CCCBCCCEEECTTCEE--CHHHHHHHHTTBCCCSEEECTTCBC-----CHHHHHHHTTCTTCSEEECTTCBSCCH-HHHH
T ss_pred ccCCCCCEEEccCCCc--CHHHHHHHHhhCCCCCEEeCcCccc-----CHHHHHHHhcCCCCCEEECCCCCCCCH-HHHH
Confidence 3445555555554321 1112444445555555555555541 1133444445555555555555 2420 0134
Q ss_pred ccccCce-ecEEeecCCCCCCC--CchhhcCCC-CCcEEeccCC
Q 043351 172 NTIIMPC-LSSFQIESCPKLKM--LPYYLLQTT-KLQELKIYLC 211 (218)
Q Consensus 172 ~~i~~L~-L~~L~l~~~~~l~~--lP~~i~~L~-~L~~L~l~~~ 211 (218)
..+..++ |++|++++|..+.. +|..+..++ +|++|++++|
T Consensus 162 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 162 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred HHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 4444444 55555555422332 333444444 4555555444
No 117
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.15 E-value=4.1e-11 Score=102.74 Aligned_cols=104 Identities=17% Similarity=0.122 Sum_probs=90.3
Q ss_pred hccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccc
Q 043351 89 FISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTG 168 (218)
Q Consensus 89 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~ 168 (218)
+..+..+++|+.|.+.++.. ..+| .+..+++|++|++++|. +..+| ++.+++|++|++++|.+..
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l----~~~~-~l~~l~~L~~L~Ls~n~------l~~~~--~~~l~~L~~L~Ls~N~l~~-- 99 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSI----TDMT-GIEKLTGLTKLICTSNN------ITTLD--LSQNTNLTYLACDSNKLTN-- 99 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCC----CCCT-TGGGCTTCSEEECCSSC------CSCCC--CTTCTTCSEEECCSSCCSC--
T ss_pred ccChhHcCCCCEEEccCCCc----ccCh-hhcccCCCCEEEccCCc------CCeEc--cccCCCCCEEECcCCCCce--
Confidence 44567789999999998643 2234 48899999999999999 88886 9999999999999999987
Q ss_pred cccccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCc
Q 043351 169 VFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 169 ~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
+| ++.++ |++|++++|. ++.+| ++++++|++|++++|.+
T Consensus 100 -~~--~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l 139 (457)
T 3bz5_A 100 -LD--VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTL 139 (457)
T ss_dssp -CC--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCC
T ss_pred -ee--cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCcc
Confidence 76 88999 9999999998 88887 88999999999999974
No 118
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.14 E-value=1.1e-10 Score=100.03 Aligned_cols=81 Identities=21% Similarity=0.253 Sum_probs=39.2
Q ss_pred HhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCchhh
Q 043351 119 FGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYL 197 (218)
Q Consensus 119 ~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i 197 (218)
+..+++|+.|++++|. +..+|. ++.+++|++|++++|.+.. +++ ++.++ |+.|++++|+ +..+| .+
T Consensus 283 ~~~l~~L~~L~L~~n~------l~~~~~-~~~l~~L~~L~L~~n~l~~---~~~-~~~l~~L~~L~l~~n~-l~~~~-~l 349 (466)
T 1o6v_A 283 LAGLTALTNLELNENQ------LEDISP-ISNLKNLTYLTLYFNNISD---ISP-VSSLTKLQRLFFYNNK-VSDVS-SL 349 (466)
T ss_dssp GTTCTTCSEEECCSSC------CSCCGG-GGGCTTCSEEECCSSCCSC---CGG-GGGCTTCCEEECCSSC-CCCCG-GG
T ss_pred ccCCCccCeEEcCCCc------ccCchh-hcCCCCCCEEECcCCcCCC---chh-hccCccCCEeECCCCc-cCCch-hh
Confidence 4445555555555554 444433 4455555555555555433 332 44444 5555555444 44333 34
Q ss_pred cCCCCCcEEeccCCC
Q 043351 198 LQTTKLQELKIYLCH 212 (218)
Q Consensus 198 ~~L~~L~~L~l~~~~ 212 (218)
.++++|+.|++++|+
T Consensus 350 ~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 350 ANLTNINWLSAGHNQ 364 (466)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred ccCCCCCEEeCCCCc
Confidence 455555555555554
No 119
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.13 E-value=5.3e-11 Score=88.86 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=88.4
Q ss_pred ccCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccc
Q 043351 59 SFDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESN 138 (218)
Q Consensus 59 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~ 138 (218)
..+..++.|.+..+... ...+..+..+++|++|.+.++.. ....+..|..+++|++|++++|.
T Consensus 25 ~~~~~l~~L~l~~n~l~----------~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~N~---- 87 (177)
T 2o6r_A 25 GIPSSATRLELESNKLQ----------SLPHGVFDKLTQLTKLSLSQNQI---QSLPDGVFDKLTKLTILYLHENK---- 87 (177)
T ss_dssp TCCTTCSEEECCSSCCC----------CCCTTTTTTCTTCSEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSC----
T ss_pred CCCCCCcEEEeCCCccc----------EeCHHHhcCcccccEEECCCCcc---eEeChhHccCCCccCEEECCCCC----
Confidence 34568899999987763 22344578899999999998643 34445557899999999999999
Q ss_pred ccccccCcc-cCCCCCCCeEeccCCCccccccccccc-cCce-ecEEeecCCCC
Q 043351 139 NLIKEIPPN-VGKLVHLRYLNLSDKFIETTGVFVNTI-IMPC-LSSFQIESCPK 189 (218)
Q Consensus 139 ~~l~~lp~~-i~~L~~L~~L~l~~~~l~~~~~lp~~i-~~L~-L~~L~l~~~~~ 189 (218)
+..+|.. ++.+++|++|++++|.+.. +|..+ ..+. |+.|++++|+.
T Consensus 88 --l~~~~~~~~~~l~~L~~L~l~~N~l~~---~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 88 --LQSLPNGVFDKLTQLKELALDTNQLKS---VPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp --CCCCCTTTTTTCTTCCEEECCSSCCSC---CCTTTTTTCTTCCEEECCSSCB
T ss_pred --ccccCHHHhhCCcccCEEECcCCcceE---eCHHHhcCCcccCEEEecCCCe
Confidence 8888765 6899999999999999988 88765 7789 99999999983
No 120
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.13 E-value=1.6e-12 Score=99.04 Aligned_cols=103 Identities=18% Similarity=0.230 Sum_probs=87.3
Q ss_pred CeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccccccccccC
Q 043351 97 VCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIM 176 (218)
Q Consensus 97 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~ 176 (218)
.++...+.+.. .....+|..+..+++|++|++++|. +..+| .++.+++|++|++++|.+.. +|..++.
T Consensus 24 ~l~~~~l~~~~--~~l~~l~~~~~~l~~L~~L~ls~n~------l~~l~-~~~~l~~L~~L~l~~n~l~~---l~~~~~~ 91 (198)
T 1ds9_A 24 EAEKVELHGMI--PPIEKMDATLSTLKACKHLALSTNN------IEKIS-SLSGMENLRILSLGRNLIKK---IENLDAV 91 (198)
T ss_dssp TCSEEECCBCC--TTCCCCHHHHHHTTTCSEEECSEEE------ESCCC-CHHHHTTCCEEEEEEEEECS---CSSHHHH
T ss_pred chheeEecccc--CcHhhhhHHHhcCCCCCEEECCCCC------Ccccc-ccccCCCCCEEECCCCCccc---ccchhhc
Confidence 35555555432 1334566689999999999999999 88898 79999999999999999988 9998888
Q ss_pred ce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCc
Q 043351 177 PC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 177 L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
++ |+.|++++|. +..+| .++.+++|++|++++|.+
T Consensus 92 ~~~L~~L~L~~N~-l~~l~-~~~~l~~L~~L~l~~N~i 127 (198)
T 1ds9_A 92 ADTLEELWISYNQ-IASLS-GIEKLVNLRVLYMSNNKI 127 (198)
T ss_dssp HHHCSEEEEEEEE-CCCHH-HHHHHHHSSEEEESEEEC
T ss_pred CCcCCEEECcCCc-CCcCC-ccccCCCCCEEECCCCcC
Confidence 89 9999999997 88888 789999999999999975
No 121
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.11 E-value=2.8e-10 Score=97.45 Aligned_cols=80 Identities=26% Similarity=0.281 Sum_probs=37.7
Q ss_pred hcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCchhhc
Q 043351 120 GELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLL 198 (218)
Q Consensus 120 ~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~ 198 (218)
..+++|+.|++++|. +..+|. ++.+++|++|++++|.+.. +|. ++.++ |+.|++++|. +..+++ ++
T Consensus 262 ~~l~~L~~L~l~~n~------l~~~~~-~~~l~~L~~L~L~~n~l~~---~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~ 328 (466)
T 1o6v_A 262 SGLTKLTELKLGANQ------ISNISP-LAGLTALTNLELNENQLED---ISP-ISNLKNLTYLTLYFNN-ISDISP-VS 328 (466)
T ss_dssp TTCTTCSEEECCSSC------CCCCGG-GTTCTTCSEEECCSSCCSC---CGG-GGGCTTCSEEECCSSC-CSCCGG-GG
T ss_pred hcCCCCCEEECCCCc------cCcccc-ccCCCccCeEEcCCCcccC---chh-hcCCCCCCEEECcCCc-CCCchh-hc
Confidence 344444444444444 333333 4444455555555554444 333 44445 5555555554 333332 44
Q ss_pred CCCCCcEEeccCCC
Q 043351 199 QTTKLQELKIYLCH 212 (218)
Q Consensus 199 ~L~~L~~L~l~~~~ 212 (218)
.+++|+.|++++|.
T Consensus 329 ~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 329 SLTKLQRLFFYNNK 342 (466)
T ss_dssp GCTTCCEEECCSSC
T ss_pred cCccCCEeECCCCc
Confidence 55555555555554
No 122
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.11 E-value=1.2e-10 Score=95.92 Aligned_cols=90 Identities=20% Similarity=0.242 Sum_probs=67.0
Q ss_pred hhHHHHHhcCCCCcEEEecC-CCCcccccccccC-cccCCCCCCCeEeccCCCcccccccc-ccccCce-ecEEeecCCC
Q 043351 113 NLLQELFGELTCLRALCISN-NSFESNNLIKEIP-PNVGKLVHLRYLNLSDKFIETTGVFV-NTIIMPC-LSSFQIESCP 188 (218)
Q Consensus 113 ~~~~~~~~~l~~Lr~L~L~~-~~~~~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~~~~lp-~~i~~L~-L~~L~l~~~~ 188 (218)
..+|. +..+++|+.|+|++ |. +..+| ..++.|++|++|+|++|.+.. +| ..++.|. |+.|+|++|.
T Consensus 22 ~~ip~-l~~~~~L~~L~l~~~n~------l~~~~~~~~~~l~~L~~L~l~~N~l~~---~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 22 DSLHH-LPGAENLTELYIENQQH------LQHLELRDLRGLGELRNLTIVKSGLRF---VAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp TTTTT-SCSCSCCSEEECCSCSS------CCEECGGGSCSCCCCSEEECCSSCCCE---ECTTGGGSCSCCCEEECCSSC
T ss_pred CccCC-CCCCCCeeEEEccCCCC------CCCcChhHhccccCCCEEECCCCccce---eCHHHhcCCcCCCEEeCCCCc
Confidence 44666 77788888888886 77 77776 467888888888888888855 54 4567888 8888888877
Q ss_pred CCCCCchhhcCCCCCcEEeccCCCc
Q 043351 189 KLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 189 ~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
+..+|..+....+|+.|++.+|++
T Consensus 92 -l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 92 -LESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp -CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred -cceeCHHHcccCCceEEEeeCCCc
Confidence 777776654434488888888874
No 123
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.10 E-value=6.4e-11 Score=98.99 Aligned_cols=111 Identities=17% Similarity=0.166 Sum_probs=64.7
Q ss_pred CCeeEEEecccccc-chhhhHHHHHhcCCCCcEEEecCCCCccccccc------ccCcccCCCCCCCeEeccCCCcccc-
Q 043351 96 KVCHSILTLSFISV-NSRNLLQELFGELTCLRALCISNNSFESNNLIK------EIPPNVGKLVHLRYLNLSDKFIETT- 167 (218)
Q Consensus 96 ~~Lr~L~l~~~~~~-~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~------~lp~~i~~L~~L~~L~l~~~~l~~~- 167 (218)
++|++|.+.++... .....+...+..+++|+.|++++|. +. -+|..+..+++|++|++++|.+...
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~------l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g 232 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG------IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG 232 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC------CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC------CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH
Confidence 55666666554321 1111222455566667777776666 43 2333566777777777777776210
Q ss_pred -ccccccccCce-ecEEeecCCCCCCC-----Cchhh--cCCCCCcEEeccCCCc
Q 043351 168 -GVFVNTIIMPC-LSSFQIESCPKLKM-----LPYYL--LQTTKLQELKIYLCHI 213 (218)
Q Consensus 168 -~~lp~~i~~L~-L~~L~l~~~~~l~~-----lP~~i--~~L~~L~~L~l~~~~~ 213 (218)
+.+|..+..++ |+.|++++|. +.. +|..+ +++++|++|++++|.+
T Consensus 233 ~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 233 SSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp HHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred HHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence 12666677777 7777777776 433 35555 3377777777777764
No 124
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.09 E-value=6.7e-11 Score=88.04 Aligned_cols=93 Identities=18% Similarity=0.207 Sum_probs=75.9
Q ss_pred hhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcc-cCCCCCCCeEeccCCCc
Q 043351 86 EELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPN-VGKLVHLRYLNLSDKFI 164 (218)
Q Consensus 86 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-i~~L~~L~~L~l~~~~l 164 (218)
..+|..+ .+.++.|.+.++. .....|..|..+++|++|+|++|. +..+|.. +..+++|++|++++|.+
T Consensus 22 ~~ip~~~--~~~l~~L~L~~N~---i~~~~~~~~~~l~~L~~L~Ls~N~------l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 22 ASVPTGI--PTTTQVLYLYDNQ---ITKLEPGVFDRLTQLTRLDLDNNQ------LTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp SSCCSCC--CTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CccCccC--CCCCcEEEcCCCc---CCccChhhhcCcccCCEEECCCCC------cCccChhhccCCCCCCEEECCCCcc
Confidence 3456555 3789999999874 344557778999999999999999 8888865 58999999999999999
Q ss_pred ccccccccc-ccCce-ecEEeecCCCCCCCC
Q 043351 165 ETTGVFVNT-IIMPC-LSSFQIESCPKLKML 193 (218)
Q Consensus 165 ~~~~~lp~~-i~~L~-L~~L~l~~~~~l~~l 193 (218)
.. +|.. +..+. |+.|++++|+ +.-.
T Consensus 91 ~~---~~~~~~~~l~~L~~L~L~~N~-~~c~ 117 (170)
T 3g39_A 91 KS---IPRGAFDNLKSLTHIWLLNNP-WDCA 117 (170)
T ss_dssp CC---CCTTTTTTCTTCCEEECCSSC-BCTT
T ss_pred CE---eCHHHhcCCCCCCEEEeCCCC-CCCC
Confidence 88 8774 78999 9999999987 4433
No 125
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.08 E-value=2.1e-10 Score=94.79 Aligned_cols=141 Identities=18% Similarity=0.065 Sum_probs=95.5
Q ss_pred ccCCceeEEEEeeeccchhhhhhhhhhhhhh-ccccCCCCeeEEEecccccc-----------------------chhhh
Q 043351 59 SFDEKIKRLHISCKMYDTVHEFSQHLSEELF-ISSFDEKVCHSILTLSFISV-----------------------NSRNL 114 (218)
Q Consensus 59 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~-----------------------~~~~~ 114 (218)
.++..+++|.+..+... .+| ..|.++++|+.|.++++... .....
T Consensus 27 ~l~~~l~~L~Ls~N~i~-----------~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l 95 (350)
T 4ay9_X 27 DLPRNAIELRFVLTKLR-----------VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95 (350)
T ss_dssp TCCTTCSEEEEESCCCS-----------EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred CcCCCCCEEEccCCcCC-----------CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc
Confidence 34566778888877663 333 35667777777777664310 11222
Q ss_pred HHHHHhcCCCCcEEEecCCCCccc-------------------ccccccCc-ccCCC-CCCCeEeccCCCcccccccccc
Q 043351 115 LQELFGELTCLRALCISNNSFESN-------------------NLIKEIPP-NVGKL-VHLRYLNLSDKFIETTGVFVNT 173 (218)
Q Consensus 115 ~~~~~~~l~~Lr~L~L~~~~~~~~-------------------~~l~~lp~-~i~~L-~~L~~L~l~~~~l~~~~~lp~~ 173 (218)
.|..|..+++|++|++++|..... +.+..+|. .+..+ ..+++|++++|.++. +|..
T Consensus 96 ~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~---i~~~ 172 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE---IHNS 172 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE---ECTT
T ss_pred CchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC---CChh
Confidence 355677888888888888763110 12223332 22333 357888999999988 9888
Q ss_pred ccCce-ecEEeecCCCCCCCCchh-hcCCCCCcEEeccCCCc
Q 043351 174 IIMPC-LSSFQIESCPKLKMLPYY-LLQTTKLQELKIYLCHI 213 (218)
Q Consensus 174 i~~L~-L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~ 213 (218)
..... |+.|++.+++.++.+|.+ +..+++|+.|++++|.+
T Consensus 173 ~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 173 AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214 (350)
T ss_dssp SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC
T ss_pred hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc
Confidence 88888 999999887779999865 58899999999999974
No 126
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.07 E-value=2.9e-10 Score=97.38 Aligned_cols=101 Identities=16% Similarity=0.112 Sum_probs=59.6
Q ss_pred cccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccccc
Q 043351 91 SSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVF 170 (218)
Q Consensus 91 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~l 170 (218)
.+..+++|+.|.+.++.. ..+|. ...+|++|++++|. +..+| +++.+++|++|++++|.+.. +
T Consensus 148 ~~~~l~~L~~L~l~~N~l----~~lp~---~~~~L~~L~L~~n~------l~~l~-~~~~l~~L~~L~l~~N~l~~---l 210 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSL----KKLPD---LPPSLEFIAAGNNQ------LEELP-ELQNLPFLTAIYADNNSLKK---L 210 (454)
T ss_dssp CCTTCTTCCEEECCSSCC----SCCCC---CCTTCCEEECCSSC------CSSCC-CCTTCTTCCEEECCSSCCSS---C
T ss_pred ccCCCCCCCEEECCCCcC----cccCC---CcccccEEECcCCc------CCcCc-cccCCCCCCEEECCCCcCCc---C
Confidence 355556666666655432 11221 12355555555555 55565 46777777777777777655 5
Q ss_pred cccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCc
Q 043351 171 VNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 171 p~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
|... . |+.|++++|. +..+| .++.+++|++|++++|.+
T Consensus 211 ~~~~---~~L~~L~l~~n~-l~~lp-~~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 211 PDLP---LSLESIVAGNNI-LEELP-ELQNLPFLTTIYADNNLL 249 (454)
T ss_dssp CCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCC
T ss_pred CCCc---CcccEEECcCCc-CCccc-ccCCCCCCCEEECCCCcC
Confidence 5432 3 6666666665 55676 467777777777777753
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.07 E-value=2.1e-10 Score=101.88 Aligned_cols=76 Identities=20% Similarity=0.261 Sum_probs=63.9
Q ss_pred CCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCchhhcCCC
Q 043351 123 TCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTT 201 (218)
Q Consensus 123 ~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~ 201 (218)
++|+.|++++|. +..+| ..+++|++|++++|.+.. +|. .+. |+.|++++|. +..+|..+.+++
T Consensus 221 ~~L~~L~Ls~N~------L~~lp---~~l~~L~~L~Ls~N~L~~---lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~ 284 (622)
T 3g06_A 221 SGLKELIVSGNR------LTSLP---VLPSELKELMVSGNRLTS---LPM---LPSGLLSLSVYRNQ-LTRLPESLIHLS 284 (622)
T ss_dssp TTCCEEECCSSC------CSCCC---CCCTTCCEEECCSSCCSC---CCC---CCTTCCEEECCSSC-CCSCCGGGGGSC
T ss_pred CCCCEEEccCCc------cCcCC---CCCCcCcEEECCCCCCCc---CCc---ccccCcEEeCCCCC-CCcCCHHHhhcc
Confidence 567777777777 67777 456788999999999888 888 567 9999999988 889999999999
Q ss_pred CCcEEeccCCCcc
Q 043351 202 KLQELKIYLCHIL 214 (218)
Q Consensus 202 ~L~~L~l~~~~~l 214 (218)
+|+.|++++|++-
T Consensus 285 ~L~~L~L~~N~l~ 297 (622)
T 3g06_A 285 SETTVNLEGNPLS 297 (622)
T ss_dssp TTCEEECCSCCCC
T ss_pred ccCEEEecCCCCC
Confidence 9999999999853
No 128
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.04 E-value=5.6e-10 Score=95.59 Aligned_cols=119 Identities=18% Similarity=0.198 Sum_probs=74.7
Q ss_pred ccCCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccc
Q 043351 59 SFDEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESN 138 (218)
Q Consensus 59 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~ 138 (218)
..+.+++.+.+..+... .+|.. .++|+.|.+.++.. ..+|. ..++|++|++++|.
T Consensus 88 ~~~~~L~~L~l~~n~l~-----------~lp~~---~~~L~~L~l~~n~l----~~l~~---~~~~L~~L~L~~n~---- 142 (454)
T 1jl5_A 88 ELPPHLESLVASCNSLT-----------ELPEL---PQSLKSLLVDNNNL----KALSD---LPPLLEYLGVSNNQ---- 142 (454)
T ss_dssp SCCTTCSEEECCSSCCS-----------SCCCC---CTTCCEEECCSSCC----SCCCS---CCTTCCEEECCSSC----
T ss_pred CCcCCCCEEEccCCcCC-----------ccccc---cCCCcEEECCCCcc----CcccC---CCCCCCEEECcCCC----
Confidence 44566777777766652 23332 36677777766532 11111 11567777777777
Q ss_pred ccccccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCCc
Q 043351 139 NLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 139 ~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~ 213 (218)
+..+| +++.+++|++|++++|.+.. +|..+ . |++|++++|. +..+| .++++++|++|++++|.+
T Consensus 143 --l~~lp-~~~~l~~L~~L~l~~N~l~~---lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 143 --LEKLP-ELQNSSFLKIIDVDNNSLKK---LPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNSL 207 (454)
T ss_dssp --CSSCC-CCTTCTTCCEEECCSSCCSC---CCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCC
T ss_pred --CCCCc-ccCCCCCCCEEECCCCcCcc---cCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCcC
Confidence 66677 47777777777777777766 66543 4 6777777766 66666 567777777777777653
No 129
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.03 E-value=3.2e-10 Score=99.67 Aligned_cols=70 Identities=23% Similarity=0.405 Sum_probs=33.2
Q ss_pred CCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCchhhcCCCC
Q 043351 124 CLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTK 202 (218)
Q Consensus 124 ~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~ 202 (218)
+|++|++++|. +..+|. .+++|++|++++|.+.. +|. .+. |+.|++++|. ++.+|. +. ++
T Consensus 121 ~L~~L~Ls~N~------l~~lp~---~l~~L~~L~Ls~N~l~~---lp~---~l~~L~~L~Ls~N~-L~~lp~-l~--~~ 181 (571)
T 3cvr_A 121 SLKHLDVDNNQ------LTMLPE---LPALLEYINADNNQLTM---LPE---LPTSLEVLSVRNNQ-LTFLPE-LP--ES 181 (571)
T ss_dssp TCCEEECCSSC------CSCCCC---CCTTCCEEECCSSCCSC---CCC---CCTTCCEEECCSSC-CSCCCC-CC--TT
T ss_pred CCCEEECCCCc------CCCCCC---cCccccEEeCCCCccCc---CCC---cCCCcCEEECCCCC-CCCcch-hh--CC
Confidence 45555555554 444444 34445555555555544 444 234 5555555444 444444 33 44
Q ss_pred CcEEeccCCC
Q 043351 203 LQELKIYLCH 212 (218)
Q Consensus 203 L~~L~l~~~~ 212 (218)
|++|++++|.
T Consensus 182 L~~L~Ls~N~ 191 (571)
T 3cvr_A 182 LEALDVSTNL 191 (571)
T ss_dssp CCEEECCSSC
T ss_pred CCEEECcCCC
Confidence 5555555554
No 130
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.97 E-value=7.5e-10 Score=98.28 Aligned_cols=98 Identities=16% Similarity=0.057 Sum_probs=55.3
Q ss_pred CCceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccccc
Q 043351 61 DEKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNL 140 (218)
Q Consensus 61 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~ 140 (218)
+.+++.|.+..+.. ..+|. .+++|++|.++++.. ..+|. .+++|++|++++|.
T Consensus 60 ~~~L~~L~L~~N~l-----------~~lp~---~l~~L~~L~Ls~N~l----~~lp~---~l~~L~~L~Ls~N~------ 112 (622)
T 3g06_A 60 PAHITTLVIPDNNL-----------TSLPA---LPPELRTLEVSGNQL----TSLPV---LPPGLLELSIFSNP------ 112 (622)
T ss_dssp CTTCSEEEECSCCC-----------SCCCC---CCTTCCEEEECSCCC----SCCCC---CCTTCCEEEECSCC------
T ss_pred CCCCcEEEecCCCC-----------CCCCC---cCCCCCEEEcCCCcC----CcCCC---CCCCCCEEECcCCc------
Confidence 34556666665554 22333 345666666666432 22332 45666666666666
Q ss_pred ccccCcccCCCCCCCeEeccCCCccccccccccccCce-ecEEeecCCCCCCCCch
Q 043351 141 IKEIPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMPC-LSSFQIESCPKLKMLPY 195 (218)
Q Consensus 141 l~~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~ 195 (218)
+..+|. .+++|++|++++|.+.. +|..+ + |++|++++|. +..+|.
T Consensus 113 l~~l~~---~l~~L~~L~L~~N~l~~---lp~~l---~~L~~L~Ls~N~-l~~l~~ 158 (622)
T 3g06_A 113 LTHLPA---LPSGLCKLWIFGNQLTS---LPVLP---PGLQELSVSDNQ-LASLPA 158 (622)
T ss_dssp CCCCCC---CCTTCCEEECCSSCCSC---CCCCC---TTCCEEECCSSC-CSCCCC
T ss_pred CCCCCC---CCCCcCEEECCCCCCCc---CCCCC---CCCCEEECcCCc-CCCcCC
Confidence 556655 44566666666666666 66532 5 6777777665 555554
No 131
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.90 E-value=2.1e-09 Score=91.46 Aligned_cols=134 Identities=16% Similarity=0.205 Sum_probs=86.1
Q ss_pred CceeEEEEeeeccchhhhhhhhhhhhhhccccCCCCeeEEEeccccccchhhh-HHHHHhcCC----CCcEEEecCCCCc
Q 043351 62 EKIKRLHISCKMYDTVHEFSQHLSEELFISSFDEKVCHSILTLSFISVNSRNL-LQELFGELT----CLRALCISNNSFE 136 (218)
Q Consensus 62 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~-~~~~~~~l~----~Lr~L~L~~~~~~ 136 (218)
++++.+.+..+...... ...++..+..+++|++|.+.++.. ... ....+..++ +|++|++++|.
T Consensus 28 ~~L~~L~L~~~~l~~~~------~~~l~~~l~~~~~L~~L~Ls~n~l---~~~~~~~l~~~l~~~~~~L~~L~L~~n~-- 96 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEAR------CKDISSALRVNPALAELNLRSNEL---GDVGVHCVLQGLQTPSCKIQKLSLQNCC-- 96 (461)
T ss_dssp TTCSEEEEESSCCCHHH------HHHHHHHHHTCTTCCEEECTTCCC---HHHHHHHHHHTTCSTTCCCCEEECTTSC--
T ss_pred CCccEEEccCCCCCHHH------HHHHHHHHHhCCCcCEEeCCCCcC---ChHHHHHHHHHHhhCCCceeEEEccCCC--
Confidence 35777888777653110 024566677788888888887532 222 233334455 68888888887
Q ss_pred cccccc-----ccCcccCCCCCCCeEeccCCCccccccccccc-----cCce-ecEEeecCCCCCCC-----CchhhcCC
Q 043351 137 SNNLIK-----EIPPNVGKLVHLRYLNLSDKFIETTGVFVNTI-----IMPC-LSSFQIESCPKLKM-----LPYYLLQT 200 (218)
Q Consensus 137 ~~~~l~-----~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i-----~~L~-L~~L~l~~~~~l~~-----lP~~i~~L 200 (218)
+. .+|..+..+++|++|++++|.+.. .-+..+ .... |++|++++|. +.. +|..+..+
T Consensus 97 ----i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~--~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~ 169 (461)
T 1z7x_W 97 ----LTGAGCGVLSSTLRTLPTLQELHLSDNLLGD--AGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAK 169 (461)
T ss_dssp ----CBGGGHHHHHHHTTSCTTCCEEECCSSBCHH--HHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHC
T ss_pred ----CCHHHHHHHHHHHccCCceeEEECCCCcCch--HHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhC
Confidence 44 467778888888888888888743 112222 2245 8888888776 442 35556667
Q ss_pred CCCcEEeccCCCc
Q 043351 201 TKLQELKIYLCHI 213 (218)
Q Consensus 201 ~~L~~L~l~~~~~ 213 (218)
++|++|++++|.+
T Consensus 170 ~~L~~L~L~~n~i 182 (461)
T 1z7x_W 170 PDFKELTVSNNDI 182 (461)
T ss_dssp TTCCEEECCSSBC
T ss_pred CCCCEEECcCCCc
Confidence 7888888887763
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.89 E-value=9.7e-10 Score=91.16 Aligned_cols=111 Identities=12% Similarity=0.106 Sum_probs=53.9
Q ss_pred CCeeEEEecccccc-chhhhHHHHHhcC-CCCcEEEecCCCCcccccccccCc-----ccCCC-CCCCeEeccCCCcccc
Q 043351 96 KVCHSILTLSFISV-NSRNLLQELFGEL-TCLRALCISNNSFESNNLIKEIPP-----NVGKL-VHLRYLNLSDKFIETT 167 (218)
Q Consensus 96 ~~Lr~L~l~~~~~~-~~~~~~~~~~~~l-~~Lr~L~L~~~~~~~~~~l~~lp~-----~i~~L-~~L~~L~l~~~~l~~~ 167 (218)
++|+.|.+.++... .....+...+..+ ++|+.|++++|. +...+. .+..+ .+|++|++++|.+...
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~------l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 153 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND------FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK 153 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC------GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc------CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH
Confidence 55666666554321 0111222233344 566666666666 444332 12332 4666666666665420
Q ss_pred c--cccccccCc-e-ecEEeecCCCCCCCCc-hh----hcCC-CCCcEEeccCCCc
Q 043351 168 G--VFVNTIIMP-C-LSSFQIESCPKLKMLP-YY----LLQT-TKLQELKIYLCHI 213 (218)
Q Consensus 168 ~--~lp~~i~~L-~-L~~L~l~~~~~l~~lP-~~----i~~L-~~L~~L~l~~~~~ 213 (218)
| .++..+..+ . |++|++++|. ++..+ .. +... ++|++|++++|.+
T Consensus 154 ~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i 208 (362)
T 3goz_A 154 SSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANLL 208 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCCC
Confidence 0 134444443 2 6777777666 43332 22 2333 4777777777764
No 133
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.86 E-value=1.6e-09 Score=92.13 Aligned_cols=119 Identities=16% Similarity=0.092 Sum_probs=68.8
Q ss_pred hhccccCCCCeeEEEeccccccc-hhhhHHHHHh-cCCCCcEEEecCCCCcccccccc-----cCcccCCCCCCCeEecc
Q 043351 88 LFISSFDEKVCHSILTLSFISVN-SRNLLQELFG-ELTCLRALCISNNSFESNNLIKE-----IPPNVGKLVHLRYLNLS 160 (218)
Q Consensus 88 ~~~~~~~~~~Lr~L~l~~~~~~~-~~~~~~~~~~-~l~~Lr~L~L~~~~~~~~~~l~~-----lp~~i~~L~~L~~L~l~ 160 (218)
++..+..+++|+.|.+.++.... ....+...+. ..++|+.|++++|. +.. +|..+..+++|++|+++
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~------l~~~~~~~l~~~l~~~~~L~~L~Ls 235 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG------VTSDNCRDLCGIVASKASLRELALG 235 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC------CBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC------CcHHHHHHHHHHHHhCCCccEEecc
Confidence 34445556677777776653200 0011111111 35567777777776 443 45666677778888887
Q ss_pred CCCccccc--ccccc-ccCce-ecEEeecCCCCCCC-----CchhhcCCCCCcEEeccCCCc
Q 043351 161 DKFIETTG--VFVNT-IIMPC-LSSFQIESCPKLKM-----LPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 161 ~~~l~~~~--~lp~~-i~~L~-L~~L~l~~~~~l~~-----lP~~i~~L~~L~~L~l~~~~~ 213 (218)
+|.+...| .+++. ...+. |+.|++++|. ++. +|..+.++++|++|++++|.+
T Consensus 236 ~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred CCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 77764311 01122 23466 7888887776 555 566677777788888777764
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.84 E-value=9.5e-10 Score=91.21 Aligned_cols=137 Identities=15% Similarity=0.176 Sum_probs=64.0
Q ss_pred CceeEEEEeeeccchhhhhhhhhhhhhhccccCC-CCeeEEEeccccccc-hhhhHHHHHhcC-CCCcEEEecCCCCccc
Q 043351 62 EKIKRLHISCKMYDTVHEFSQHLSEELFISSFDE-KVCHSILTLSFISVN-SRNLLQELFGEL-TCLRALCISNNSFESN 138 (218)
Q Consensus 62 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Lr~L~l~~~~~~~-~~~~~~~~~~~l-~~Lr~L~L~~~~~~~~ 138 (218)
..++.|.+..+...... ...+...+... ++|++|.+.++.... ....+...+..+ ++|++|++++|.
T Consensus 80 ~~L~~L~Ls~n~l~~~~------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~---- 149 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKS------SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND---- 149 (362)
T ss_dssp TTCCEEECCSSCGGGSC------HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC----
T ss_pred CCccEEECcCCcCChHH------HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc----
Confidence 45666666665543100 01111223333 566666666653210 111222223332 466666666666
Q ss_pred cccc-----ccCcccCCCC-CCCeEeccCCCcccccccccccc----Cc-e-ecEEeecCCCCCCC-----CchhhcCC-
Q 043351 139 NLIK-----EIPPNVGKLV-HLRYLNLSDKFIETTGVFVNTII----MP-C-LSSFQIESCPKLKM-----LPYYLLQT- 200 (218)
Q Consensus 139 ~~l~-----~lp~~i~~L~-~L~~L~l~~~~l~~~~~lp~~i~----~L-~-L~~L~l~~~~~l~~-----lP~~i~~L- 200 (218)
+. .++..+..++ +|++|++++|.+.. ..+..++ .. . |+.|++++|. +.. +|..+..+
T Consensus 150 --l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~--~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~ 224 (362)
T 3goz_A 150 --LGIKSSDELIQILAAIPANVNSLNLRGNNLAS--KNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIP 224 (362)
T ss_dssp --GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG--SCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSC
T ss_pred --CCHHHHHHHHHHHhcCCccccEeeecCCCCch--hhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCC
Confidence 33 3334444444 66666666666533 1222222 22 4 6666666655 444 44444442
Q ss_pred CCCcEEeccCCCc
Q 043351 201 TKLQELKIYLCHI 213 (218)
Q Consensus 201 ~~L~~L~l~~~~~ 213 (218)
++|++|++++|.+
T Consensus 225 ~~L~~L~Ls~N~l 237 (362)
T 3goz_A 225 NHVVSLNLCLNCL 237 (362)
T ss_dssp TTCCEEECCSSCC
T ss_pred CCceEEECcCCCC
Confidence 3566666666653
No 135
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.83 E-value=3e-09 Score=87.48 Aligned_cols=90 Identities=18% Similarity=0.145 Sum_probs=76.7
Q ss_pred hhhhccccCCCCeeEEEecc-ccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCc-ccCCCCCCCeEeccCCC
Q 043351 86 EELFISSFDEKVCHSILTLS-FISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPP-NVGKLVHLRYLNLSDKF 163 (218)
Q Consensus 86 ~~~~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 163 (218)
..+|. +..+++|+.|.+.+ +. .....+..|..+++|+.|+|++|. +..+|+ .++.|++|++|+|++|.
T Consensus 22 ~~ip~-l~~~~~L~~L~l~~~n~---l~~~~~~~~~~l~~L~~L~l~~N~------l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 22 DSLHH-LPGAENLTELYIENQQH---LQHLELRDLRGLGELRNLTIVKSG------LRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp TTTTT-SCSCSCCSEEECCSCSS---CCEECGGGSCSCCCCSEEECCSSC------CCEECTTGGGSCSCCCEEECCSSC
T ss_pred CccCC-CCCCCCeeEEEccCCCC---CCCcChhHhccccCCCEEECCCCc------cceeCHHHhcCCcCCCEEeCCCCc
Confidence 45787 99999999999985 53 344555778999999999999999 777764 67999999999999999
Q ss_pred ccccccccccccCce-ecEEeecCCC
Q 043351 164 IETTGVFVNTIIMPC-LSSFQIESCP 188 (218)
Q Consensus 164 l~~~~~lp~~i~~L~-L~~L~l~~~~ 188 (218)
+.. +|..+.... |+.|++.+|+
T Consensus 92 l~~---~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 92 LES---LSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSC---CCSTTTCSCCCCEEECCSSC
T ss_pred cce---eCHHHcccCCceEEEeeCCC
Confidence 988 998877766 9999999887
No 136
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.72 E-value=2.6e-08 Score=82.13 Aligned_cols=77 Identities=25% Similarity=0.244 Sum_probs=39.6
Q ss_pred CCcEEEecCCCCcccccccccCcccCCCCCCCeEeccC-CCcccccccccc-ccCce-ecEEeecCCCCCCCCchhhcCC
Q 043351 124 CLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSD-KFIETTGVFVNT-IIMPC-LSSFQIESCPKLKMLPYYLLQT 200 (218)
Q Consensus 124 ~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~-~~l~~~~~lp~~-i~~L~-L~~L~l~~~~~l~~lP~~i~~L 200 (218)
.++.|++++|. ++.+|..+....+|+.|++++ |.++. +|.. ++.+. |+.|++++|+ ++.+|.. .+
T Consensus 155 ~l~~L~L~~N~------i~~i~~~~f~~~~L~~l~l~~~n~l~~---i~~~~f~~l~~L~~LdLs~N~-l~~lp~~--~~ 222 (350)
T 4ay9_X 155 ESVILWLNKNG------IQEIHNSAFNGTQLDELNLSDNNNLEE---LPNDVFHGASGPVILDISRTR-IHSLPSY--GL 222 (350)
T ss_dssp SCEEEECCSSC------CCEECTTSSTTEEEEEEECTTCTTCCC---CCTTTTTTEECCSEEECTTSC-CCCCCSS--SC
T ss_pred hhhhhcccccc------ccCCChhhccccchhHHhhccCCcccC---CCHHHhccCcccchhhcCCCC-cCccChh--hh
Confidence 46666666666 555555555555555555543 33555 5543 34555 5555555554 5555542 23
Q ss_pred CCCcEEeccCCC
Q 043351 201 TKLQELKIYLCH 212 (218)
Q Consensus 201 ~~L~~L~l~~~~ 212 (218)
.+|+.|.+.++.
T Consensus 223 ~~L~~L~~l~~~ 234 (350)
T 4ay9_X 223 ENLKKLRARSTY 234 (350)
T ss_dssp TTCCEEECTTCT
T ss_pred ccchHhhhccCC
Confidence 344444444443
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.68 E-value=8.6e-09 Score=86.02 Aligned_cols=111 Identities=13% Similarity=0.100 Sum_probs=74.9
Q ss_pred CCeeEEEeccccccc-hhhhHHHHH-hcCCCCcEEEecCCCCcccccccc-----cCcccCCCCCCCeEeccCCCccccc
Q 043351 96 KVCHSILTLSFISVN-SRNLLQELF-GELTCLRALCISNNSFESNNLIKE-----IPPNVGKLVHLRYLNLSDKFIETTG 168 (218)
Q Consensus 96 ~~Lr~L~l~~~~~~~-~~~~~~~~~-~~l~~Lr~L~L~~~~~~~~~~l~~-----lp~~i~~L~~L~~L~l~~~~l~~~~ 168 (218)
++|+.|.+.++.... ....+...+ ...+.|+.|+|++|. +.. ++..+...++|++|+|++|.+...|
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~------l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g 199 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP------LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEG 199 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC------CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC------CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHH
Confidence 467777777754311 112233333 246778888888887 543 5555677888999999999876422
Q ss_pred --cccccccCce-ecEEeecCCCCCCC-----CchhhcCCCCCcEEeccCCCc
Q 043351 169 --VFVNTIIMPC-LSSFQIESCPKLKM-----LPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 169 --~lp~~i~~L~-L~~L~l~~~~~l~~-----lP~~i~~L~~L~~L~l~~~~~ 213 (218)
.++..+.... |++|++++|. ++. ++..+...++|++|++++|.+
T Consensus 200 ~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 200 LELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 2456667777 9999999887 553 444556678899999999975
No 138
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.56 E-value=3.8e-08 Score=86.23 Aligned_cols=137 Identities=13% Similarity=0.062 Sum_probs=79.8
Q ss_pred CceeEEEEeeeccchhhhhhhhhhhhhhcccc-CCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCccccc
Q 043351 62 EKIKRLHISCKMYDTVHEFSQHLSEELFISSF-DEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNL 140 (218)
Q Consensus 62 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~ 140 (218)
.+++++.+..+... ...+..+. .+++|++|.+.++.. .....++..+..+++|++|++++|... +..
T Consensus 105 ~~L~~L~L~~~~~~----------~~~~~~l~~~~~~L~~L~L~~~~~-~~~~~l~~~~~~~~~L~~L~L~~~~i~-~~~ 172 (594)
T 2p1m_B 105 TWLEEIRLKRMVVT----------DDCLELIAKSFKNFKVLVLSSCEG-FSTDGLAAIAATCRNLKELDLRESDVD-DVS 172 (594)
T ss_dssp TTCCEEEEESCBCC----------HHHHHHHHHHCTTCCEEEEESCEE-EEHHHHHHHHHHCTTCCEEECTTCEEE-CCC
T ss_pred CCCCeEEeeCcEEc----------HHHHHHHHHhCCCCcEEeCCCcCC-CCHHHHHHHHHhCCCCCEEeCcCCccC-Ccc
Confidence 35666666665443 22233332 467788888776532 122335565667888888888887620 000
Q ss_pred ccccCcccCCCCCCCeEeccCCC--ccccccccccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCC
Q 043351 141 IKEIPPNVGKLVHLRYLNLSDKF--IETTGVFVNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLC 211 (218)
Q Consensus 141 l~~lp~~i~~L~~L~~L~l~~~~--l~~~~~lp~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~ 211 (218)
...++.....+++|++|++++|. +.. ..++.-+..++ |++|++++|..+..+|..+.++++|++|++..+
T Consensus 173 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 173 GHWLSHFPDTYTSLVSLNISCLASEVSF-SALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp GGGGGGSCTTCCCCCEEECTTCCSCCCH-HHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred hHHHHHHhhcCCcCcEEEecccCCcCCH-HHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 11233333466788888888775 210 11233234457 888888888656667777777888888876554
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.53 E-value=9.5e-08 Score=83.69 Aligned_cols=21 Identities=10% Similarity=0.086 Sum_probs=10.7
Q ss_pred hHHHHHhcCCCCcEEEecCCC
Q 043351 114 LLQELFGELTCLRALCISNNS 134 (218)
Q Consensus 114 ~~~~~~~~l~~Lr~L~L~~~~ 134 (218)
.++..+..+++|+.|++++|.
T Consensus 211 ~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 211 DLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp HHHHHHHHCTTCCEEECSSCB
T ss_pred HHHHHHhhCCCCcEEeccCcc
Confidence 344444555555555555554
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.51 E-value=2.9e-08 Score=87.01 Aligned_cols=104 Identities=12% Similarity=0.027 Sum_probs=48.1
Q ss_pred eeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccc-----cCcccCCCCCCCeEeccCCCccc--cccc
Q 043351 98 CHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKE-----IPPNVGKLVHLRYLNLSDKFIET--TGVF 170 (218)
Q Consensus 98 Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~-----lp~~i~~L~~L~~L~l~~~~l~~--~~~l 170 (218)
|+.|.+.++.. .....++.....+++|++|+|++|. +.. ++.....+++|++|++++|.+.. .+.+
T Consensus 140 L~~L~L~~~~~-~~~~~l~~~~~~~~~L~~L~L~~~~------~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l 212 (592)
T 3ogk_B 140 LETLKLDKCSG-FTTDGLLSIVTHCRKIKTLLMEESS------FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL 212 (592)
T ss_dssp CCEEEEESCEE-EEHHHHHHHHHHCTTCSEEECTTCE------EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHH
T ss_pred CcEEECcCCCC-cCHHHHHHHHhhCCCCCEEECcccc------ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHH
Confidence 55555554331 1122333434455666666666654 221 22223344555555555555421 0113
Q ss_pred cccccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEecc
Q 043351 171 VNTIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIY 209 (218)
Q Consensus 171 p~~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~ 209 (218)
+..+..++ |++|++++|. +..+|..+.++++|++|+++
T Consensus 213 ~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 213 ETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGG 251 (592)
T ss_dssp HHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEEC
T ss_pred HHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhccc
Confidence 33344445 5555555554 44455455555555555554
No 141
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.51 E-value=8.9e-08 Score=72.01 Aligned_cols=126 Identities=16% Similarity=0.153 Sum_probs=88.3
Q ss_pred hhhhccccCCCCeeEEEeccc-ccc-chhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCC
Q 043351 86 EELFISSFDEKVCHSILTLSF-ISV-NSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKF 163 (218)
Q Consensus 86 ~~~~~~~~~~~~Lr~L~l~~~-~~~-~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 163 (218)
..+...+...+.|++|.+.++ ... .....+...+...+.|++|+|++|... +.....+...+...++|++|+|++|.
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~-~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN-DPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC-HHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC-hHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 345566778899999999886 431 223456677788899999999999820 00011244556667889999999999
Q ss_pred ccccc--cccccccCce-ecEEee--cCCCCCCC-----CchhhcCCCCCcEEeccCCCc
Q 043351 164 IETTG--VFVNTIIMPC-LSSFQI--ESCPKLKM-----LPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 164 l~~~~--~lp~~i~~L~-L~~L~l--~~~~~l~~-----lP~~i~~L~~L~~L~l~~~~~ 213 (218)
|...| .+...+.... |++|++ ++|. ++. +...+...++|++|++++|.+
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 86522 2456677778 999999 7676 543 444566678999999999975
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.42 E-value=6.2e-08 Score=80.82 Aligned_cols=141 Identities=15% Similarity=0.104 Sum_probs=96.6
Q ss_pred cccCCceeEEEEeeeccchhhhhhhhhhhhhhcccc-CCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCc
Q 043351 58 SSFDEKIKRLHISCKMYDTVHEFSQHLSEELFISSF-DEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFE 136 (218)
Q Consensus 58 ~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~ 136 (218)
......++.+.+..+....... ..+...+. ..++|+.|++.++.. ...........+++|+.|+|++|.
T Consensus 68 ~~~~~~L~~L~Ls~n~l~~~~~------~~l~~~L~~~~~~L~~L~Ls~n~l--~~~~~~~l~~~L~~L~~L~Ls~n~-- 137 (372)
T 3un9_A 68 AEVLSSLRQLNLAGVRMTPVKC------TVVAAVLGSGRHALDEVNLASCQL--DPAGLRTLLPVFLRARKLGLQLNS-- 137 (372)
T ss_dssp HHHHTTCCEEECTTSCCCHHHH------HHHHHHHSSCSSCEEEEECTTCCC--CHHHHHHTHHHHHTEEEEECCSSC--
T ss_pred HHHHhhCCEEEecCCCCCHHHH------HHHHHHHhhCCCCceEEEecCCCC--CHHHHHHHHHHHHhccHhhcCCCC--
Confidence 4456778899998877642111 22333333 347999999998753 112233333456689999999998
Q ss_pred cccccccc-----Cccc-CCCCCCCeEeccCCCccccc--cccccccCce-ecEEeecCCCCCCC-----CchhhcCCCC
Q 043351 137 SNNLIKEI-----PPNV-GKLVHLRYLNLSDKFIETTG--VFVNTIIMPC-LSSFQIESCPKLKM-----LPYYLLQTTK 202 (218)
Q Consensus 137 ~~~~l~~l-----p~~i-~~L~~L~~L~l~~~~l~~~~--~lp~~i~~L~-L~~L~l~~~~~l~~-----lP~~i~~L~~ 202 (218)
+... ...+ ...++|++|+|++|.+...| .++..+...+ |++|++++|. ++. ++..+...++
T Consensus 138 ----l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~ 212 (372)
T 3un9_A 138 ----LGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQ 212 (372)
T ss_dssp ----CCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSC
T ss_pred ----CCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCC
Confidence 5432 2222 35678999999999985411 2555667788 9999999998 543 4556778889
Q ss_pred CcEEeccCCCc
Q 043351 203 LQELKIYLCHI 213 (218)
Q Consensus 203 L~~L~l~~~~~ 213 (218)
|++|++++|.+
T Consensus 213 L~~L~Ls~N~i 223 (372)
T 3un9_A 213 LQELNVAYNGA 223 (372)
T ss_dssp CCEEECCSSCC
T ss_pred cCeEECCCCCC
Confidence 99999999985
No 143
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.32 E-value=2.1e-07 Score=74.05 Aligned_cols=81 Identities=20% Similarity=0.127 Sum_probs=62.6
Q ss_pred HhcCCCCcEEEecCCCCcccccccc---cCcccCCCCCCCeEeccCCCccccccccccccCc---eecEEeecCCCCCCC
Q 043351 119 FGELTCLRALCISNNSFESNNLIKE---IPPNVGKLVHLRYLNLSDKFIETTGVFVNTIIMP---CLSSFQIESCPKLKM 192 (218)
Q Consensus 119 ~~~l~~Lr~L~L~~~~~~~~~~l~~---lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i~~L---~L~~L~l~~~~~l~~ 192 (218)
...++.|+.|+|++|. +.. +|..++.+++|++|+|++|.+.. + ..+..+ .|+.|++++|+....
T Consensus 166 ~~~l~~L~~L~Ls~N~------l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~---~-~~l~~l~~l~L~~L~L~~Npl~~~ 235 (267)
T 3rw6_A 166 EENIPELLSLNLSNNR------LYRLDDMSSIVQKAPNLKILNLSGNELKS---E-RELDKIKGLKLEELWLDGNSLCDT 235 (267)
T ss_dssp HHHCTTCCEEECTTSC------CCCCGGGTTHHHHSTTCCEEECTTSCCCS---G-GGGGGGTTSCCSEEECTTSTTGGG
T ss_pred HhhCCCCCEEECCCCC------CCCCccchhHHhhCCCCCEEECCCCccCC---c-hhhhhcccCCcceEEccCCcCccc
Confidence 3679999999999999 554 45666789999999999999977 5 334443 389999999994445
Q ss_pred Cch-------hhcCCCCCcEEecc
Q 043351 193 LPY-------YLLQTTKLQELKIY 209 (218)
Q Consensus 193 lP~-------~i~~L~~L~~L~l~ 209 (218)
+|. .+..+++|+.||-.
T Consensus 236 ~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 236 FRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp CSSHHHHHHHHHHHCTTCCEESSC
T ss_pred cCcchhHHHHHHHHCcccCeECCc
Confidence 552 36789999998754
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.25 E-value=3.5e-07 Score=80.06 Aligned_cols=112 Identities=15% Similarity=0.106 Sum_probs=65.5
Q ss_pred CCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCCCCCeEeccCCCc---------
Q 043351 94 DEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLVHLRYLNLSDKFI--------- 164 (218)
Q Consensus 94 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l--------- 164 (218)
.+++|++|.+.++........++..+..+++|++|++++|.. +..+|..+..+++|++|+++.+..
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~-----~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 256 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP-----LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG 256 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC-----HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc-----HHHHHHHHhcCCcceEcccccccCccchhhHHH
Confidence 555666666665431111234455556677888888887743 555666666666677776443310
Q ss_pred -----------cc--------cccccccccCce-ecEEeecCCCCCCC--CchhhcCCCCCcEEeccCC
Q 043351 165 -----------ET--------TGVFVNTIIMPC-LSSFQIESCPKLKM--LPYYLLQTTKLQELKIYLC 211 (218)
Q Consensus 165 -----------~~--------~~~lp~~i~~L~-L~~L~l~~~~~l~~--lP~~i~~L~~L~~L~l~~~ 211 (218)
+. .+.+|..+..++ |+.|++++|. +.. ++..+.++++|++|++++|
T Consensus 257 l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 257 LSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 00 011444444567 8888888877 442 2223567888888888877
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.23 E-value=2.3e-06 Score=71.08 Aligned_cols=113 Identities=15% Similarity=0.099 Sum_probs=69.8
Q ss_pred CCCeeEEEeccccccchhhhHHHHHh--cCCCCcEEEecCCCCc--ccccccccCccc--CCCCCCCeEeccCCCccccc
Q 043351 95 EKVCHSILTLSFISVNSRNLLQELFG--ELTCLRALCISNNSFE--SNNLIKEIPPNV--GKLVHLRYLNLSDKFIETTG 168 (218)
Q Consensus 95 ~~~Lr~L~l~~~~~~~~~~~~~~~~~--~l~~Lr~L~L~~~~~~--~~~~l~~lp~~i--~~L~~L~~L~l~~~~l~~~~ 168 (218)
+++|+.|.+..+.. .......+. .+++|+.|+|+.+... .+..+..+...+ +.+++|++|++++|.+..
T Consensus 192 ~~~L~~L~L~~~~l---~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~-- 266 (362)
T 2ra8_A 192 RPNLKSLEIISGGL---PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN-- 266 (362)
T ss_dssp CTTCSEEEEECSBC---CHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHH--
T ss_pred CCCCcEEEEecCCC---ChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCch--
Confidence 56677777665422 122222333 7899999998642110 000022222222 357899999999988742
Q ss_pred cccccc---cCce-ecEEeecCCCCCCC-----CchhhcCCCCCcEEeccCCCc
Q 043351 169 VFVNTI---IMPC-LSSFQIESCPKLKM-----LPYYLLQTTKLQELKIYLCHI 213 (218)
Q Consensus 169 ~lp~~i---~~L~-L~~L~l~~~~~l~~-----lP~~i~~L~~L~~L~l~~~~~ 213 (218)
..+..+ ..++ |++|+++.|. ++. ++..+.++++|+.|+++.|.+
T Consensus 267 ~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 267 VVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp HHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 122222 3578 9999999876 554 455566789999999999975
No 146
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.23 E-value=1e-06 Score=65.64 Aligned_cols=87 Identities=8% Similarity=0.083 Sum_probs=40.3
Q ss_pred CCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCC----CCCCeEeccCCC-ccccccc
Q 043351 96 KVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKL----VHLRYLNLSDKF-IETTGVF 170 (218)
Q Consensus 96 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L----~~L~~L~l~~~~-l~~~~~l 170 (218)
..|+.|+++++.. ...--..+..+++|+.|+|++|....+..+ ..++.+ ++|++|++++|. |+..|.
T Consensus 61 ~~L~~LDLs~~~I---td~GL~~L~~~~~L~~L~L~~C~~ItD~gL----~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl- 132 (176)
T 3e4g_A 61 YKIQAIDATDSCI---MSIGFDHMEGLQYVEKIRLCKCHYIEDGCL----ERLSQLENLQKSMLEMEIISCGNVTDKGI- 132 (176)
T ss_dssp CCEEEEEEESCCC---CGGGGGGGTTCSCCCEEEEESCTTCCHHHH----HHHHTCHHHHHHCCEEEEESCTTCCHHHH-
T ss_pred ceEeEEeCcCCCc---cHHHHHHhcCCCCCCEEEeCCCCccCHHHH----HHHHhcccccCCCCEEEcCCCCcCCHHHH-
Confidence 3566666665432 111112245566666666666653111111 123332 246666666654 543111
Q ss_pred cccccCce-ecEEeecCCCCCC
Q 043351 171 VNTIIMPC-LSSFQIESCPKLK 191 (218)
Q Consensus 171 p~~i~~L~-L~~L~l~~~~~l~ 191 (218)
..+.+++ |+.|++++|+.++
T Consensus 133 -~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 133 -IALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp -HHGGGCTTCCEEEEESCTTCC
T ss_pred -HHHhcCCCCCEEECCCCCCCC
Confidence 2244455 6666666665444
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.02 E-value=4.1e-06 Score=62.81 Aligned_cols=101 Identities=15% Similarity=0.118 Sum_probs=74.8
Q ss_pred hhhhHHHHHhcCCCCcEEEecCC-CCcccccccccCcccCCCCCCCeEeccCCCccccc--cccccccCce-ecEEeecC
Q 043351 111 SRNLLQELFGELTCLRALCISNN-SFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTG--VFVNTIIMPC-LSSFQIES 186 (218)
Q Consensus 111 ~~~~~~~~~~~l~~Lr~L~L~~~-~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~--~lp~~i~~L~-L~~L~l~~ 186 (218)
....+...+...+.|+.|+|++| .. .+.....+...+...++|++|+|++|.+...| .+...+...+ |++|++++
T Consensus 24 ~~~~l~~~l~~~~~L~~L~L~~n~~i-~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 24 VEETLKRIQNNDPDLEEVNLNNIMNI-PVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVES 102 (185)
T ss_dssp HHHHHHHHHTTCTTCCEEECTTCTTC-CHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHHhcCCCCCEEEecCCCCC-CHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcC
Confidence 44567777889999999999999 62 11112235566778899999999999986422 2344555667 99999999
Q ss_pred CCCCCC-----CchhhcCCCCCcEEec--cCCCc
Q 043351 187 CPKLKM-----LPYYLLQTTKLQELKI--YLCHI 213 (218)
Q Consensus 187 ~~~l~~-----lP~~i~~L~~L~~L~l--~~~~~ 213 (218)
|. +.. +...+...++|++|++ ++|.+
T Consensus 103 N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 103 NF-ISGSGILALVEALQSNTSLIELRIDNQSQPL 135 (185)
T ss_dssp SC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred Cc-CCHHHHHHHHHHHHhCCCceEEEecCCCCCC
Confidence 98 553 4566778889999999 77875
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.91 E-value=5.8e-06 Score=65.70 Aligned_cols=81 Identities=15% Similarity=0.051 Sum_probs=60.5
Q ss_pred cCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccCCCC--CCCeEeccCCCccccccc
Q 043351 93 FDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVGKLV--HLRYLNLSDKFIETTGVF 170 (218)
Q Consensus 93 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~--~L~~L~l~~~~l~~~~~l 170 (218)
..+++|++|.+++|.. .....+|..+..+++|+.|+|++|. +..+. .+..+. +|++|+|++|++ .+.+
T Consensus 167 ~~l~~L~~L~Ls~N~l-~~l~~l~~~~~~l~~L~~L~Ls~N~------i~~~~-~l~~l~~l~L~~L~L~~Npl--~~~~ 236 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRL-YRLDDMSSIVQKAPNLKILNLSGNE------LKSER-ELDKIKGLKLEELWLDGNSL--CDTF 236 (267)
T ss_dssp HHCTTCCEEECTTSCC-CCCGGGTTHHHHSTTCCEEECTTSC------CCSGG-GGGGGTTSCCSEEECTTSTT--GGGC
T ss_pred hhCCCCCEEECCCCCC-CCCccchhHHhhCCCCCEEECCCCc------cCCch-hhhhcccCCcceEEccCCcC--cccc
Confidence 4678999999999865 2223456777899999999999999 66653 355555 999999999998 3335
Q ss_pred cc-------cccCce-ecEEe
Q 043351 171 VN-------TIIMPC-LSSFQ 183 (218)
Q Consensus 171 p~-------~i~~L~-L~~L~ 183 (218)
|. .+..++ |+.||
T Consensus 237 ~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 237 RDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp SSHHHHHHHHHHHCTTCCEES
T ss_pred CcchhHHHHHHHHCcccCeEC
Confidence 53 246677 88876
No 149
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.88 E-value=2.8e-06 Score=74.34 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhCCCccccccCCCCeeeEEeChhHHHHHHHHHH-hhc
Q 043351 8 CIVLLSSYFNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSE-QLV 56 (218)
Q Consensus 8 ~e~~~~~y~~~L~~rsli~~~~~~~~~~~~~~mHdl~~dl~~~i~~-~~~ 56 (218)
.+++|+ ||++|++||||+..... +..+|+|||+|||+|+++++ ++.
T Consensus 427 ~~~~~~-~l~~L~~rsLl~~~~~~--~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 427 DDEVAD-RLKRLSKRGALLSGKRM--PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp THHHHH-HHHHTTTBSSCSEEECS--SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHH-HHHHHHHcCCeeEecCC--CceEEEeChHHHHHHHHHHHHHHH
Confidence 357777 99999999999987642 44689999999999999888 664
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.86 E-value=2.3e-05 Score=63.76 Aligned_cols=78 Identities=14% Similarity=0.145 Sum_probs=37.9
Q ss_pred CCCCcEEEecCCCCcccccccccCc-ccCCCCCCCeEeccCCCccccccccc-cccCce-ec-EEeecCCCCCCCCc-hh
Q 043351 122 LTCLRALCISNNSFESNNLIKEIPP-NVGKLVHLRYLNLSDKFIETTGVFVN-TIIMPC-LS-SFQIESCPKLKMLP-YY 196 (218)
Q Consensus 122 l~~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~~~~lp~-~i~~L~-L~-~L~l~~~~~l~~lP-~~ 196 (218)
+++|+.+++++|. +..+|+ .+..+.+|+.+++.++ ++. +++ .+..+. |+ .+++.+ . ++.++ ..
T Consensus 225 ~~~L~~l~L~~n~------i~~I~~~aF~~~~~L~~l~l~~n-i~~---I~~~aF~~~~~L~~~l~l~~-~-l~~I~~~a 292 (329)
T 3sb4_A 225 MPNLVSLDISKTN------ATTIPDFTFAQKKYLLKIKLPHN-LKT---IGQRVFSNCGRLAGTLELPA-S-VTAIEFGA 292 (329)
T ss_dssp CTTCCEEECTTBC------CCEECTTTTTTCTTCCEEECCTT-CCE---ECTTTTTTCTTCCEEEEECT-T-CCEECTTT
T ss_pred cCCCeEEECCCCC------cceecHhhhhCCCCCCEEECCcc-cce---ehHHHhhCChhccEEEEEcc-c-ceEEchhh
Confidence 5555555555555 455543 3455555555555554 444 433 234444 55 555543 2 44443 33
Q ss_pred hcCCCCCcEEeccCC
Q 043351 197 LLQTTKLQELKIYLC 211 (218)
Q Consensus 197 i~~L~~L~~L~l~~~ 211 (218)
+.++++|+.+++++|
T Consensus 293 F~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 293 FMGCDNLRYVLATGD 307 (329)
T ss_dssp TTTCTTEEEEEECSS
T ss_pred hhCCccCCEEEeCCC
Confidence 455555555555444
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.72 E-value=4.8e-05 Score=63.06 Aligned_cols=145 Identities=10% Similarity=0.050 Sum_probs=73.4
Q ss_pred chhHHHHHHHHHHHHHhCCCccccccC----CCCeeeEEeChhHHHHHHHHHH-hhcc----cccCCceeEEEEeeeccc
Q 043351 5 LGMCIVLLSSYFNISATRSFFQEFNEN----TDNIISCKTCDMVHDFSQYLSE-QLVI----SSFDEKIKRLHISCKMYD 75 (218)
Q Consensus 5 ~g~~e~~~~~y~~~L~~rsli~~~~~~----~~~~~~~~mHdl~~dl~~~i~~-~~~~----~~~~~~~r~l~l~~~~~~ 75 (218)
.+.+...++.-..+=..||-....... ......+.+- .|=. ... +.|. ...+.+++.|.+....++
T Consensus 46 ~~~a~~~~~~l~~~k~~kGy~~~~~~~~~~p~~~a~rl~~~---~~~~--~~~~~~~~~fl~~~~~~~v~~L~lg~~~~~ 120 (362)
T 2ra8_A 46 AGEAEKAAGKLIAEKTKKGYVETLEEVAKEMKVEAKKYALS---YDEA--EEGVNLMDKILKDKKLPSLKQITIGXWGYE 120 (362)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCHHHHHHCCCCEEEECCC---HHHH--HTTCCHHHHHHHCTTGGGCSEEEECCCCSS
T ss_pred HHHHHHHHHHHHHHHHhcCCccccccCCCCchhhceEEEee---cCCc--ccHHHHHHHHhcCCCchhcceEEEcccccC
Confidence 344566666667777778775432221 2222223331 1101 111 1111 333456788887754332
Q ss_pred hhhhhhhhhhhhhhccccCCCCeeEEEecccccc--ch----hhhHHHHHhcCCCCcEEEecCCCCcccccccccCcccC
Q 043351 76 TVHEFSQHLSEELFISSFDEKVCHSILTLSFISV--NS----RNLLQELFGELTCLRALCISNNSFESNNLIKEIPPNVG 149 (218)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~--~~----~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~ 149 (218)
. .. .......+..++.++++|++|.+...... .. ...++..+..+++|+.|+++++.. + .+|. +.
T Consensus 121 ~-~~-~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~-----l-~l~~-~~ 191 (362)
T 2ra8_A 121 G-ED-CSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN-----L-SIGK-KP 191 (362)
T ss_dssp S-CC-SHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT-----C-BCCS-CB
T ss_pred C-Cc-HHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC-----c-eecc-cc
Confidence 0 00 00011233445566788999987543110 01 123667778899999999988742 2 3443 32
Q ss_pred CCCCCCeEeccCCCc
Q 043351 150 KLVHLRYLNLSDKFI 164 (218)
Q Consensus 150 ~L~~L~~L~l~~~~l 164 (218)
+++|+.|++..+.+
T Consensus 192 -~~~L~~L~L~~~~l 205 (362)
T 2ra8_A 192 -RPNLKSLEIISGGL 205 (362)
T ss_dssp -CTTCSEEEEECSBC
T ss_pred -CCCCcEEEEecCCC
Confidence 56666666665554
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.71 E-value=0.00018 Score=58.36 Aligned_cols=99 Identities=11% Similarity=-0.010 Sum_probs=80.0
Q ss_pred CCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccC-cccCCCCCCC-eEeccCCCcccccccc-
Q 043351 95 EKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIP-PNVGKLVHLR-YLNLSDKFIETTGVFV- 171 (218)
Q Consensus 95 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~-~L~l~~~~l~~~~~lp- 171 (218)
+++|+++.+..+. .....+..|..+.+|+.+++..+ +..++ .++..+.+|+ .+.+.+ .++. ++
T Consensus 225 ~~~L~~l~L~~n~---i~~I~~~aF~~~~~L~~l~l~~n-------i~~I~~~aF~~~~~L~~~l~l~~-~l~~---I~~ 290 (329)
T 3sb4_A 225 MPNLVSLDISKTN---ATTIPDFTFAQKKYLLKIKLPHN-------LKTIGQRVFSNCGRLAGTLELPA-SVTA---IEF 290 (329)
T ss_dssp CTTCCEEECTTBC---CCEECTTTTTTCTTCCEEECCTT-------CCEECTTTTTTCTTCCEEEEECT-TCCE---ECT
T ss_pred cCCCeEEECCCCC---cceecHhhhhCCCCCCEEECCcc-------cceehHHHhhCChhccEEEEEcc-cceE---Ech
Confidence 7889999998753 33455567899999999999885 56665 4678999999 999988 6777 75
Q ss_pred ccccCce-ecEEeecCCCCCCCCch-hhcCCCCCcEEec
Q 043351 172 NTIIMPC-LSSFQIESCPKLKMLPY-YLLQTTKLQELKI 208 (218)
Q Consensus 172 ~~i~~L~-L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l 208 (218)
..+..+. |+.+++.++. +..++. .+.++++|+.++.
T Consensus 291 ~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 291 GAFMGCDNLRYVLATGDK-ITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTTTCTTEEEEEECSSC-CCEECTTTTCTTCCCCEEEC
T ss_pred hhhhCCccCCEEEeCCCc-cCccchhhhcCCcchhhhcc
Confidence 5678888 9999998777 888875 6789999999874
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.58 E-value=1.4e-05 Score=59.38 Aligned_cols=86 Identities=16% Similarity=0.111 Sum_probs=62.8
Q ss_pred CCCcEEEecCCCCccccccccc-CcccCCCCCCCeEeccCCC-ccccccccccccCc----e-ecEEeecCCCCCCCCc-
Q 043351 123 TCLRALCISNNSFESNNLIKEI-PPNVGKLVHLRYLNLSDKF-IETTGVFVNTIIMP----C-LSSFQIESCPKLKMLP- 194 (218)
Q Consensus 123 ~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L~~L~l~~~~-l~~~~~lp~~i~~L----~-L~~L~l~~~~~l~~lP- 194 (218)
..|+.||+++|. ++.. -..+..+++|+.|+|++|. ++..| -..++.+ + |+.|++++|..++.--
T Consensus 61 ~~L~~LDLs~~~------Itd~GL~~L~~~~~L~~L~L~~C~~ItD~g--L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 61 YKIQAIDATDSC------IMSIGFDHMEGLQYVEKIRLCKCHYIEDGC--LERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CCEEEEEEESCC------CCGGGGGGGTTCSCCCEEEEESCTTCCHHH--HHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred ceEeEEeCcCCC------ccHHHHHHhcCCCCCCEEEeCCCCccCHHH--HHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 369999999998 4432 2446889999999999997 75411 1334443 5 9999999998776421
Q ss_pred hhhcCCCCCcEEeccCCCcccc
Q 043351 195 YYLLQTTKLQELKIYLCHILEE 216 (218)
Q Consensus 195 ~~i~~L~~L~~L~l~~~~~l~~ 216 (218)
..+.++++|++|++++|+.+.+
T Consensus 133 ~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHhcCCCCCEEECCCCCCCCc
Confidence 2467899999999999986653
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.54 E-value=0.0055 Score=51.30 Aligned_cols=18 Identities=11% Similarity=0.004 Sum_probs=8.3
Q ss_pred HHHhcCCCCcEEEecCCC
Q 043351 117 ELFGELTCLRALCISNNS 134 (218)
Q Consensus 117 ~~~~~l~~Lr~L~L~~~~ 134 (218)
..|..+++|+.+++.++.
T Consensus 265 ~aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGST 282 (401)
T ss_dssp TTTTTCTTCCEEEEESSC
T ss_pred hHhhCCCCCCEEEeCCcc
Confidence 334444455555444443
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.52 E-value=0.0048 Score=43.20 Aligned_cols=51 Identities=12% Similarity=0.144 Sum_probs=35.1
Q ss_pred EEEecCCCCccccccc--ccCcccCCCCCCCeEeccCCCccccccccccc-cCce-ecEEeecCCC
Q 043351 127 ALCISNNSFESNNLIK--EIPPNVGKLVHLRYLNLSDKFIETTGVFVNTI-IMPC-LSSFQIESCP 188 (218)
Q Consensus 127 ~L~L~~~~~~~~~~l~--~lp~~i~~L~~L~~L~l~~~~l~~~~~lp~~i-~~L~-L~~L~l~~~~ 188 (218)
+++-++++ ++ .+|..+. .+|++|+|++|.|.. +|... ..+. |+.|+|.+|+
T Consensus 12 ~v~Cs~~~------L~~~~vP~~lp--~~l~~L~Ls~N~l~~---l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRG------LTWASLPTAFP--VDTTELVLTGNNLTA---LPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSC------CCTTTSCSCCC--TTCSEEECTTSCCSS---CCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCC------CccccCCCCCC--cCCCEEECCCCcCCc---cChhhhhhccccCEEEecCCC
Confidence 56666666 66 7775433 367888888888877 76654 5566 7888887766
No 156
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.28 E-value=0.0038 Score=58.98 Aligned_cols=43 Identities=9% Similarity=0.006 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhCCCccccccCCCCeeeEEeChhHHHHHHHHHH
Q 043351 9 IVLLSSYFNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYLSE 53 (218)
Q Consensus 9 e~~~~~y~~~L~~rsli~~~~~~~~~~~~~~mHdl~~dl~~~i~~ 53 (218)
++.+++++++|+++|||+... .++..+|+|||++|++++..+.
T Consensus 408 ~~~~~~~l~~L~~~sl~~~~~--~~~~~~~~~h~l~~~~~~~~~~ 450 (1249)
T 3sfz_A 408 TEEVEDILQEFVNKSLLFCNR--NGKSFCYYLHDLQVDFLTEKNR 450 (1249)
T ss_dssp HHHHHHHHHHHHHTTSCEEEE--SSSSEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHhccceEEec--CCCceEEEecHHHHHHHHhhhh
Confidence 578999999999999999755 3555679999999999998765
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.15 E-value=0.0085 Score=41.92 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=28.9
Q ss_pred CCcEEEecCCCCcccccccccCcc-cCCCCCCCeEeccCCCcc
Q 043351 124 CLRALCISNNSFESNNLIKEIPPN-VGKLVHLRYLNLSDKFIE 165 (218)
Q Consensus 124 ~Lr~L~L~~~~~~~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~ 165 (218)
+|+.|+|++|. +..+|.. +..+++|++|+|++|++.
T Consensus 32 ~l~~L~Ls~N~------l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNN------LTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSC------CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCc------CCccChhhhhhccccCEEEecCCCee
Confidence 68888999888 8888754 577888899998888764
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.99 E-value=0.016 Score=48.49 Aligned_cols=36 Identities=17% Similarity=0.113 Sum_probs=16.1
Q ss_pred HHHhcCCCCcEEEecCCCCcccccccccC-cccCCCCCCCeEec
Q 043351 117 ELFGELTCLRALCISNNSFESNNLIKEIP-PNVGKLVHLRYLNL 159 (218)
Q Consensus 117 ~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~~L~l 159 (218)
..|..+++|+.+++. +. +..++ ..+..+.+|+.+.+
T Consensus 294 ~aF~~c~~L~~l~l~-~~------i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 294 YCLEGCPKLARFEIP-ES------IRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp TTTTTCTTCCEECCC-TT------CCEECTTTTTTCCSCCEEEE
T ss_pred HHhhCCccCCeEEeC-Cc------eEEEhhhhhcCCCCccEEEE
Confidence 334445555555544 22 33333 23444455555555
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.46 E-value=0.016 Score=43.54 Aligned_cols=119 Identities=12% Similarity=0.147 Sum_probs=75.6
Q ss_pred hhccccCCCCeeEEEeccc-cc-cchhhhHHHHHhcCCCCcEEEecCCCCcccccccc-----cCcccCCCCCCCeEecc
Q 043351 88 LFISSFDEKVCHSILTLSF-IS-VNSRNLLQELFGELTCLRALCISNNSFESNNLIKE-----IPPNVGKLVHLRYLNLS 160 (218)
Q Consensus 88 ~~~~~~~~~~Lr~L~l~~~-~~-~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~-----lp~~i~~L~~L~~L~l~ 160 (218)
+...+..-+.|+.|.+.++ .. ......+-+.+..=+.|+.|+|++|. +.. +.+.+..=+.|+.|+|+
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~------igd~ga~alA~aL~~N~tL~~L~L~ 106 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA------ISDSEARGLIELIETSPSLRVLNVE 106 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC------CBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC------CChHHHHHHHHHHhcCCccCeEecC
Confidence 3444556778888988764 22 12234566667777889999999998 432 33334445679999999
Q ss_pred CCCcccccc--ccccccCce-ecEEeecCCCC--CC-----CCchhhcCCCCCcEEeccCCC
Q 043351 161 DKFIETTGV--FVNTIIMPC-LSSFQIESCPK--LK-----MLPYYLLQTTKLQELKIYLCH 212 (218)
Q Consensus 161 ~~~l~~~~~--lp~~i~~L~-L~~L~l~~~~~--l~-----~lP~~i~~L~~L~~L~l~~~~ 212 (218)
+|.|...|. +-..+..-. |+.|++++|.. +. .+-..+..=+.|+.|+++.|.
T Consensus 107 ~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 107 SNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp SSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 998865331 233455556 89999986531 22 122334455688888887765
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.49 E-value=0.027 Score=42.32 Aligned_cols=99 Identities=20% Similarity=0.186 Sum_probs=65.2
Q ss_pred hhhHHHHHhcCCCCcEEEecCC-CCcccccccccCcccCCCCCCCeEeccCCCcccccc--ccccccCce-ecEEeecCC
Q 043351 112 RNLLQELFGELTCLRALCISNN-SFESNNLIKEIPPNVGKLVHLRYLNLSDKFIETTGV--FVNTIIMPC-LSSFQIESC 187 (218)
Q Consensus 112 ~~~~~~~~~~l~~Lr~L~L~~~-~~~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~~~~--lp~~i~~L~-L~~L~l~~~ 187 (218)
...+...+..-+.|+.|+|+++ .. .+.....+-+.+..=..|+.|+|++|.+...|. +...+..-. |+.|+|+.|
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~i-gd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRV-SKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSS-CHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHhcCCCccEEECCCCCCC-CHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 3456666677889999999986 51 000112344556667899999999999865221 233344446 999999988
Q ss_pred CCCCC-----CchhhcCCCCCcEEeccCCC
Q 043351 188 PKLKM-----LPYYLLQTTKLQELKIYLCH 212 (218)
Q Consensus 188 ~~l~~-----lP~~i~~L~~L~~L~l~~~~ 212 (218)
. ++. +-..+..=+.|+.|++++|.
T Consensus 109 ~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 109 F-LTPELLARLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp B-CCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred c-CCHHHHHHHHHHHhhCCceeEEECCCCc
Confidence 8 542 22334445679999998763
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.38 E-value=0.13 Score=42.36 Aligned_cols=106 Identities=14% Similarity=0.153 Sum_probs=72.9
Q ss_pred ccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccCc-ccCCCCCCCeEeccCCCccccc
Q 043351 90 ISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIPP-NVGKLVHLRYLNLSDKFIETTG 168 (218)
Q Consensus 90 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~~~ 168 (218)
..|..++.|+++.+.... ...-...|..+..|+.+.+.. . +..+++ .+..+.+|+.+.+..+ ++.
T Consensus 259 ~aF~~c~~L~~i~lp~~~----~~I~~~aF~~c~~L~~i~l~~-~------i~~I~~~aF~~c~~L~~i~lp~~-v~~-- 324 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSV----VSIGTGAFMNCPALQDIEFSS-R------ITELPESVFAGCISLKSIDIPEG-ITQ-- 324 (394)
T ss_dssp TTTTTCSSCCEEECCTTC----CEECTTTTTTCTTCCEEECCT-T------CCEECTTTTTTCTTCCEEECCTT-CCE--
T ss_pred ceeeecccccEEeccccc----ceecCcccccccccccccCCC-c------ccccCceeecCCCCcCEEEeCCc-ccE--
Confidence 356677888888775532 223344567788888888853 3 666663 5677889999988654 655
Q ss_pred cccc-cccCce-ecEEeecCCCCCCCCc-hhhcCCCCCcEEeccCCC
Q 043351 169 VFVN-TIIMPC-LSSFQIESCPKLKMLP-YYLLQTTKLQELKIYLCH 212 (218)
Q Consensus 169 ~lp~-~i~~L~-L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~ 212 (218)
++. .+..+. |+.+.+..+ ++.++ ..+.++++|+.+++.++.
T Consensus 325 -I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 325 -ILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp -ECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred -ehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCce
Confidence 644 456677 898888632 66775 457888999999888764
No 162
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=94.26 E-value=0.022 Score=53.29 Aligned_cols=37 Identities=5% Similarity=-0.101 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhCCCccccccCCCCeeeEEeChhHHHHHH
Q 043351 9 IVLLSSYFNISATRSFFQEFNENTDNIISCKTCDMVHDFSQ 49 (218)
Q Consensus 9 e~~~~~y~~~L~~rsli~~~~~~~~~~~~~~mHdl~~dl~~ 49 (218)
++.|++++++|++||||+... +...|+|||++++++.
T Consensus 401 eedAe~~L~eLvdRSLLq~d~----~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 401 KSDVMVVVNKLHKYSLVEKQP----KESTISIPSIYLELKV 437 (1221)
T ss_dssp SHHHHHHHHHHHTSSSSSBCS----SSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCEEEeC----CCCEEEehHHHHHHhc
Confidence 356899999999999999842 2347999999999763
No 163
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=94.24 E-value=0.05 Score=47.48 Aligned_cols=41 Identities=10% Similarity=-0.019 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhCCCccccccCCCCeeeEEeChhHHHHHHHH
Q 043351 9 IVLLSSYFNISATRSFFQEFNENTDNIISCKTCDMVHDFSQYL 51 (218)
Q Consensus 9 e~~~~~y~~~L~~rsli~~~~~~~~~~~~~~mHdl~~dl~~~i 51 (218)
++.++.++++|+++|||+... .+....|+|||+++++++..
T Consensus 408 ~~~~~~~l~~L~~~~Ll~~~~--~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 408 TEEVEDILQEFVNKSLLFCDR--NGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHHHHHHHHHHHHTTSSEEEE--ETTEEEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCeEEec--CCCccEEEEcHHHHHHHHhh
Confidence 356789999999999998654 24556899999999999876
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.28 E-value=0.14 Score=41.83 Aligned_cols=104 Identities=17% Similarity=0.166 Sum_probs=60.6
Q ss_pred ccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccC-cccCCCCCCCeEeccCCCccccccc
Q 043351 92 SFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIP-PNVGKLVHLRYLNLSDKFIETTGVF 170 (218)
Q Consensus 92 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~~~~l 170 (218)
+..++.|+.+.+... ....-...|..+..|+.+.+..+ +..++ ..+..+.+|+.+.+.++.++. +
T Consensus 236 f~~~~~L~~i~lp~~----v~~I~~~aF~~~~~l~~i~l~~~-------i~~i~~~aF~~c~~L~~i~l~~~~i~~---I 301 (379)
T 4h09_A 236 FYGMKALDEIAIPKN----VTSIGSFLLQNCTALKTLNFYAK-------VKTVPYLLCSGCSNLTKVVMDNSAIET---L 301 (379)
T ss_dssp TTTCSSCCEEEECTT----CCEECTTTTTTCTTCCEEEECCC-------CSEECTTTTTTCTTCCEEEECCTTCCE---E
T ss_pred ccCCccceEEEcCCC----ccEeCccccceeehhcccccccc-------ceeccccccccccccccccccccccce---e
Confidence 344555555555432 11222334556666666666432 44454 345677888888887777777 7
Q ss_pred cc-cccCce-ecEEeecCCCCCCCCch-hhcCCCCCcEEeccCC
Q 043351 171 VN-TIIMPC-LSSFQIESCPKLKMLPY-YLLQTTKLQELKIYLC 211 (218)
Q Consensus 171 p~-~i~~L~-L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~ 211 (218)
+. .+.... |+.+.+..+ ++.++. .+.++++|+.+.+..+
T Consensus 302 ~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 302 EPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCTT
T ss_pred hhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECCc
Confidence 54 345566 888887532 555553 4566777777766543
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.75 E-value=0.1 Score=43.14 Aligned_cols=103 Identities=13% Similarity=0.091 Sum_probs=62.3
Q ss_pred ccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccC-cccCCCCCCCeEeccCCCccccc
Q 043351 90 ISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIP-PNVGKLVHLRYLNLSDKFIETTG 168 (218)
Q Consensus 90 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~~~ 168 (218)
..+..+..++.+...... .....|..+.+|+.+.+..+ ++.++ .++..+.+|+.+.+..+ ++.
T Consensus 270 ~~F~~~~~l~~~~~~~~~------i~~~~F~~~~~L~~i~l~~~-------i~~I~~~aF~~c~~L~~i~lp~~-v~~-- 333 (394)
T 4fs7_A 270 SLFYNCSGLKKVIYGSVI------VPEKTFYGCSSLTEVKLLDS-------VKFIGEEAFESCTSLVSIDLPYL-VEE-- 333 (394)
T ss_dssp CTTTTCTTCCEEEECSSE------ECTTTTTTCTTCCEEEECTT-------CCEECTTTTTTCTTCCEECCCTT-CCE--
T ss_pred cccccccccceeccCcee------eccccccccccccccccccc-------cceechhhhcCCCCCCEEEeCCc-ccE--
Confidence 345566667666554421 12234567777887777543 45554 34667778888877543 555
Q ss_pred cccc-cccCce-ecEEeecCCCCCCCCch-hhcCCCCCcEEeccCC
Q 043351 169 VFVN-TIIMPC-LSSFQIESCPKLKMLPY-YLLQTTKLQELKIYLC 211 (218)
Q Consensus 169 ~lp~-~i~~L~-L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~ 211 (218)
++. .+..+. |+.+.+..+ ++.++. .+.++++|+.+++..+
T Consensus 334 -I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 334 -IGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp -ECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred -EhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 643 455666 777777543 555543 4667777887777654
No 166
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=91.31 E-value=0.19 Score=41.44 Aligned_cols=105 Identities=12% Similarity=0.100 Sum_probs=68.6
Q ss_pred ccccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccC-cccCCCCCCCeEeccCCCccccc
Q 043351 90 ISSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIP-PNVGKLVHLRYLNLSDKFIETTG 168 (218)
Q Consensus 90 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~~~ 168 (218)
..+..++.|+.+.+... ........|..+.+|+.+++..+ ++.++ .++..+.+|+.+.+..+ ++.
T Consensus 282 ~aF~~c~~L~~i~l~~~----i~~I~~~aF~~c~~L~~i~lp~~-------v~~I~~~aF~~C~~L~~i~ip~s-v~~-- 347 (394)
T 4gt6_A 282 GAFMNCPALQDIEFSSR----ITELPESVFAGCISLKSIDIPEG-------ITQILDDAFAGCEQLERIAIPSS-VTK-- 347 (394)
T ss_dssp TTTTTCTTCCEEECCTT----CCEECTTTTTTCTTCCEEECCTT-------CCEECTTTTTTCTTCCEEEECTT-CCB--
T ss_pred cccccccccccccCCCc----ccccCceeecCCCCcCEEEeCCc-------ccEehHhHhhCCCCCCEEEECcc-cCE--
Confidence 45677899999988652 23344566889999999999753 56665 46788999999999654 666
Q ss_pred cccc-cccCce-ecEEeecCCCCCCCCchhhcCCCCCcEEeccCCC
Q 043351 169 VFVN-TIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQELKIYLCH 212 (218)
Q Consensus 169 ~lp~-~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~ 212 (218)
++. .+.... |+.+++.++. . .. ..+....+|+.+.+..+.
T Consensus 348 -I~~~aF~~C~~L~~i~~~~~~-~-~~-~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 348 -IPESAFSNCTALNNIEYSGSR-S-QW-NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp -CCGGGGTTCTTCCEEEESSCH-H-HH-HTCBCCCCC---------
T ss_pred -EhHhHhhCCCCCCEEEECCce-e-eh-hhhhccCCCCEEEeCCCC
Confidence 654 567778 9999998754 1 12 345666788888887664
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=90.54 E-value=0.48 Score=38.96 Aligned_cols=98 Identities=15% Similarity=0.137 Sum_probs=54.5
Q ss_pred cccCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccC-cccCCCCCCCeEeccCCCcccccc
Q 043351 91 SSFDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIP-PNVGKLVHLRYLNLSDKFIETTGV 169 (218)
Q Consensus 91 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~~~~ 169 (218)
.+..+.+|+.+.+... ....-...|..+.+|+.+++.. . ++.++ .++..+.+|+.+.+..+ ++.
T Consensus 292 ~F~~~~~L~~i~l~~~----i~~I~~~aF~~c~~L~~i~lp~-~------v~~I~~~aF~~c~~L~~i~lp~~-l~~--- 356 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS----VKFIGEEAFESCTSLVSIDLPY-L------VEEIGKRSFRGCTSLSNINFPLS-LRK--- 356 (394)
T ss_dssp TTTTCTTCCEEEECTT----CCEECTTTTTTCTTCCEECCCT-T------CCEECTTTTTTCTTCCEECCCTT-CCE---
T ss_pred cccccccccccccccc----cceechhhhcCCCCCCEEEeCC-c------ccEEhHHhccCCCCCCEEEECcc-ccE---
Confidence 4556667777766542 2223334466777777777643 2 45553 35566777777777554 555
Q ss_pred ccc-cccCce-ecEEeecCCCCCCCCchhhcCCCCCcE
Q 043351 170 FVN-TIIMPC-LSSFQIESCPKLKMLPYYLLQTTKLQE 205 (218)
Q Consensus 170 lp~-~i~~L~-L~~L~l~~~~~l~~lP~~i~~L~~L~~ 205 (218)
++. .+..+. |+.+++..+ ++.+...+.+.++|+.
T Consensus 357 I~~~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 357 IGANAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKW 392 (394)
T ss_dssp ECTTTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEE
T ss_pred ehHHHhhCCCCCCEEEECCC--CEEhhheecCCCCCcE
Confidence 543 345555 777766532 3344444555555554
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=86.69 E-value=1.9 Score=34.95 Aligned_cols=103 Identities=17% Similarity=0.147 Sum_probs=64.9
Q ss_pred cCCCCeeEEEeccccccchhhhHHHHHhcCCCCcEEEecCCCCcccccccccC-cccCCCCCCCeEeccCCCcccccccc
Q 043351 93 FDEKVCHSILTLSFISVNSRNLLQELFGELTCLRALCISNNSFESNNLIKEIP-PNVGKLVHLRYLNLSDKFIETTGVFV 171 (218)
Q Consensus 93 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~~~~lp 171 (218)
...+.++.+.+... ........|..+..|+.+.+..+ +..++ ..+..+.+|+.+.+..+ +.. ++
T Consensus 214 ~~~~~l~~i~~~~~----~~~i~~~~f~~~~~L~~i~lp~~-------v~~I~~~aF~~~~~l~~i~l~~~-i~~---i~ 278 (379)
T 4h09_A 214 SYGKNLKKITITSG----VTTLGDGAFYGMKALDEIAIPKN-------VTSIGSFLLQNCTALKTLNFYAK-VKT---VP 278 (379)
T ss_dssp TTCSSCSEEECCTT----CCEECTTTTTTCSSCCEEEECTT-------CCEECTTTTTTCTTCCEEEECCC-CSE---EC
T ss_pred ccccccceeeeccc----eeEEccccccCCccceEEEcCCC-------ccEeCccccceeehhcccccccc-cee---cc
Confidence 34445555554332 11222334566777777777543 44443 34567778888888543 555 65
Q ss_pred cc-ccCce-ecEEeecCCCCCCCCch-hhcCCCCCcEEeccCC
Q 043351 172 NT-IIMPC-LSSFQIESCPKLKMLPY-YLLQTTKLQELKIYLC 211 (218)
Q Consensus 172 ~~-i~~L~-L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~ 211 (218)
.. +.... |+.+.+.++. ++.++. .+.++++|+.+.+..+
T Consensus 279 ~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 279 YLLCSGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp TTTTTTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECCTT
T ss_pred ccccccccccccccccccc-cceehhhhhcCCCCCCEEEcCcc
Confidence 53 45667 9999998666 777764 5678899999998654
Done!