BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043353
(499 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DXT|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2d
Length = 354
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/323 (30%), Positives = 155/323 (47%), Gaps = 45/323 (13%)
Query: 38 YYPTLQEFDDPFIYLQKIAPE-ASQFGICKIISPVK----------ASVSAADVLKKEIK 86
++PT +EF+D Y+ + + A + G+ KII P + + + A L++
Sbjct: 21 FHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARETYDNISEILIATPLQQVAS 80
Query: 87 GFEFGTYRQPLRLPKWNANDTGVFFSGERKHTYDTFESEAIKMLKRQSPRLGDLPPSYVE 146
G G + Q + K GE +H ++ K Q+P + +E
Sbjct: 81 G-RAGVFTQYHKKKK-------AMTVGEYRHLANS--------KKYQTPPHQNFED--LE 122
Query: 147 KKFWLEMTHGRKGTVEYGVNIEGSAFSSDPNDQLGKCKWHLKTLRGLPQSIFRFLEHIIP 206
+K+W + + YG +I GS F D N + +W+L L + + + +I
Sbjct: 123 RKYWKNRIYN---SPIYGADISGSLF--DENTK----QWNLGHLGTIQDLLEKECGVVIE 173
Query: 207 GITDPMLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVYS 266
G+ P LY GM + FAWH ED L+SINY H G PKTWY VP H + E++AR
Sbjct: 174 GVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKTWYVVPPEHGQRLERLARE---- 229
Query: 267 RDILSAAGEDGAFEVIAEKTTIFPPKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNG 326
L G + K + P +L +NG+ + Q+ GEF++TFP YHAGF++G
Sbjct: 230 ---LFPGSSRGCGAFLRHKVALISPTVLKENGIPFNRITQEAGEFMVTFPYGYHAGFNHG 286
Query: 327 FNCGEAVNFAIRDWFPFGEEAGK 349
FNC EA+NFA W +G+ A +
Sbjct: 287 FNCAEAINFATPRWIDYGKMASQ 309
>pdb|3DXU|A Chain A, The Crystal Structure Of Core Jmjd2d Complexed With Fe And
N- Oxalylglycine
Length = 337
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/323 (30%), Positives = 155/323 (47%), Gaps = 45/323 (13%)
Query: 38 YYPTLQEFDDPFIYLQKIAPE-ASQFGICKIISPVK----------ASVSAADVLKKEIK 86
++PT +EF+D Y+ + + A + G+ KII P + + + A L++
Sbjct: 14 FHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARETYDNISEILIATPLQQVAS 73
Query: 87 GFEFGTYRQPLRLPKWNANDTGVFFSGERKHTYDTFESEAIKMLKRQSPRLGDLPPSYVE 146
G G + Q + K GE +H ++ K Q+P + +E
Sbjct: 74 G-RAGVFTQYHKKKK-------AMTVGEYRHLANS--------KKYQTPPHQNFED--LE 115
Query: 147 KKFWLEMTHGRKGTVEYGVNIEGSAFSSDPNDQLGKCKWHLKTLRGLPQSIFRFLEHIIP 206
+K+W + + YG +I GS F D N + +W+L L + + + +I
Sbjct: 116 RKYWKNRIYN---SPIYGADISGSLF--DENTK----QWNLGHLGTIQDLLEKECGVVIE 166
Query: 207 GITDPMLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVYS 266
G+ P LY GM + FAWH ED L+SINY H G PKTWY VP H + E++AR
Sbjct: 167 GVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKTWYVVPPEHGQRLERLARE---- 222
Query: 267 RDILSAAGEDGAFEVIAEKTTIFPPKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNG 326
L G + K + P +L +NG+ + Q+ GEF++TFP YHAGF++G
Sbjct: 223 ---LFPGSSRGCGAFLRHKVALISPTVLKENGIPFNRITQEAGEFMVTFPYGYHAGFNHG 279
Query: 327 FNCGEAVNFAIRDWFPFGEEAGK 349
FNC EA+NFA W +G+ A +
Sbjct: 280 FNCAEAINFATPRWIDYGKMASQ 302
>pdb|4HON|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An
H3k9me3 Peptide And 2-oxoglutarate
pdb|4HON|B Chain B, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An
H3k9me3 Peptide And 2-oxoglutarate
Length = 330
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/323 (30%), Positives = 155/323 (47%), Gaps = 45/323 (13%)
Query: 38 YYPTLQEFDDPFIYLQKIAPE-ASQFGICKIISPVK----------ASVSAADVLKKEIK 86
++PT +EF+D Y+ + + A + G+ KII P + + + A L++
Sbjct: 10 FHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARETYDNISEILIATPLQQVAS 69
Query: 87 GFEFGTYRQPLRLPKWNANDTGVFFSGERKHTYDTFESEAIKMLKRQSPRLGDLPPSYVE 146
G G + Q + K GE +H ++ K Q+P + +E
Sbjct: 70 G-RAGVFTQYHKKKK-------AMTVGEYRHLANS--------KKYQTPPHQNFED--LE 111
Query: 147 KKFWLEMTHGRKGTVEYGVNIEGSAFSSDPNDQLGKCKWHLKTLRGLPQSIFRFLEHIIP 206
+K+W + + YG +I GS F D N + +W+L L + + + +I
Sbjct: 112 RKYWKNRIYN---SPIYGADISGSLF--DENTK----QWNLGHLGTIQDLLEKECGVVIE 162
Query: 207 GITDPMLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVYS 266
G+ P LY GM + FAWH ED L+SINY H G PKTWY VP H + E++AR
Sbjct: 163 GVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKTWYVVPPEHGQRLERLARE---- 218
Query: 267 RDILSAAGEDGAFEVIAEKTTIFPPKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNG 326
L G + K + P +L +NG+ + Q+ GEF++TFP YHAGF++G
Sbjct: 219 ---LFPGSSRGCGAFLRHKVALISPTVLKENGIPFNRITQEAGEFMVTFPYGYHAGFNHG 275
Query: 327 FNCGEAVNFAIRDWFPFGEEAGK 349
FNC EA+NFA W +G+ A +
Sbjct: 276 FNCAEAINFATPRWIDYGKMASQ 298
>pdb|4HOO|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme
pdb|4HOO|B Chain B, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme
Length = 330
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 150/315 (47%), Gaps = 29/315 (9%)
Query: 38 YYPTLQEFDDPFIYLQKIAPE-ASQFGICKIISPVKASVSAADVLKKEIKGFEFGTYRQP 96
++PT +EF+D Y+ + + A + G+ KII P + EI P
Sbjct: 10 FHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARETYDNISEI------LIATP 63
Query: 97 LRLPKWNANDTGVFFSGERKHTYDTFES--EAIKMLKRQSPRLGDLPPSYVEKKFWLEMT 154
L+ + + GVF +K T K Q+P + +E+K+W
Sbjct: 64 LQ--QVASGRAGVFTQYHKKAAAMTVGEYRHLANSKKYQTPPHQNFED--LERKYWKNRI 119
Query: 155 HGRKGTVEYGVNIEGSAFSSDPNDQLGKCKWHLKTLRGLPQSIFRFLEHIIPGITDPMLY 214
+ + YG +I GS F D N + +W+L L + + + +I G+ P LY
Sbjct: 120 YN---SPIYGADISGSLF--DENTK----QWNLGHLGTIQDLLEKECGVVIEGVNTPYLY 170
Query: 215 IGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVYSRDILSAAG 274
GM + FAWH ED L+SINY H G PKTWY VP H + E++AR L
Sbjct: 171 FGMWKTTFAWHTEDMDLYSINYLHLGEPKTWYVVPPEHGQRLERLARE-------LFPGS 223
Query: 275 EDGAFEVIAEKTTIFPPKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNGFNCGEAVN 334
G + K + P +L +NG+ + Q+ GEF++TFP YHAGF++GFNC EA+N
Sbjct: 224 SRGCGAFLRHKVALISPTVLKENGIPFNRITQEAGEFMVTFPYGYHAGFNHGFNCAEAIN 283
Query: 335 FAIRDWFPFGEEAGK 349
FA W +G+ A +
Sbjct: 284 FATPRWIDYGKMASQ 298
>pdb|2W2I|A Chain A, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
pdb|2W2I|B Chain B, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
pdb|2W2I|C Chain C, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
Length = 358
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 153/327 (46%), Gaps = 51/327 (15%)
Query: 37 AYYPTLQEFDDPFIYLQKIAPE-ASQFGICKIISPVKASVSAADVLKKEIKGFEFGTYRQ 95
+YPT++EF D Y+ + + A Q G+ K+I P + A + +I+ T
Sbjct: 39 TFYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWK---ARQMYDDIEDILIAT--- 92
Query: 96 PLRLPKWNANDTGVFFSGERKHTYDTFESEAIKMLKRQSPRLGD-----LPP----SYVE 146
PL+ + + GVF +K M Q RL + PP + +E
Sbjct: 93 PLQ--QVTSGQGGVFTQYHKKKK---------AMRVGQYRRLANSKKYQTPPHQNFADLE 141
Query: 147 KKFWLEMTHGRKGTVEYGVNIEGSAFSSDPNDQLGKCKWHLKTLRGLPQSIFRFLEH--- 203
+++W +H + YG +I GS F +W+L L +I LE
Sbjct: 142 QRYW--KSHPGNPPI-YGADISGSLFEESTK------QWNLGHLG----TILDLLEQECG 188
Query: 204 -IIPGITDPMLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARN 262
+I G+ P LY GM + FAWH ED L+SINY H G PKTWY VP H E++AR
Sbjct: 189 VVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARE 248
Query: 263 QVYSRDILSAAGEDGAFEVIAEKTTIFPPKILLDNGVSVYKAVQKPGEFVITFPRVYHAG 322
L G + K + P +L +NG+ Q+ GEF++TFP YHAG
Sbjct: 249 -------LFPDISRGCEAFLRHKVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAG 301
Query: 323 FSNGFNCGEAVNFAIRDWFPFGEEAGK 349
F++GFNC EA+NFA W +G+ A +
Sbjct: 302 FNHGFNCAEAINFATPRWIDYGKMASQ 328
>pdb|2PXJ|A Chain A, The Complex Structure Of Jmjd2a And Monomethylated H3k36
Peptide
pdb|2PXJ|B Chain B, The Complex Structure Of Jmjd2a And Monomethylated H3k36
Peptide
Length = 347
Score = 135 bits (340), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 152/317 (47%), Gaps = 35/317 (11%)
Query: 37 AYYPTLQEFDDPFIYLQKIAPE-ASQFGICKIISPV--KASVSAADVLKKEIKGFEFGTY 93
+YPT++EF + Y+ I + A + G+ K++ P K S D+ I
Sbjct: 15 TFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYDDIDDLVI-------- 66
Query: 94 RQPLRLPKWNANDTGVFFS---GERKHTYDTFESEAIKMLKRQSPRLGDLPPSYVEKKFW 150
P + + +G+F ++ T F A K +PR + +E+K+W
Sbjct: 67 --PAPIQQLVTGQSGLFTQYNIQKKAMTVREFRKIA-NSDKYCTPRYSEF--EELERKYW 121
Query: 151 LEMTHGRKGTVEYGVNIEGSAFSSDPNDQLGKCKWHLKTLRGLPQSIFRFLEHIIPGITD 210
+T YG ++ G+ + ++ W++ LR + + + I G+
Sbjct: 122 KNLTFN---PPIYGADVNGTLYEKHVDE------WNIGRLRTILDLVEKESGITIEGVNT 172
Query: 211 PMLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVYSRDIL 270
P LY GM + FAWH ED L+SINY H G PK+WY VP H + E++A+
Sbjct: 173 PYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGF-----FP 227
Query: 271 SAAGEDGAFEVIAEKTTIFPPKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNGFNCG 330
+A AF + K T+ P +L G+ K Q+ GEF+ITFP YHAGF++GFNC
Sbjct: 228 GSAQSCEAF--LRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCA 285
Query: 331 EAVNFAIRDWFPFGEEA 347
E+ NFA R W +G++A
Sbjct: 286 ESTNFATRRWIEYGKQA 302
>pdb|2P5B|A Chain A, The Complex Structure Of Jmjd2a And Trimethylated H3k36
Peptide
pdb|2P5B|B Chain B, The Complex Structure Of Jmjd2a And Trimethylated H3k36
Peptide
pdb|2Q8C|A Chain A, Crystal Structure Of Jmjd2a In Ternary Complex With An
Histone H3k9me3 Peptide And 2-Oxoglutarate
pdb|2Q8C|B Chain B, Crystal Structure Of Jmjd2a In Ternary Complex With An
Histone H3k9me3 Peptide And 2-Oxoglutarate
pdb|2Q8D|A Chain A, Crystal Structure Of Jmj2d2a In Ternary Complex With
Histone H3-K36me2 And Succinate
pdb|2Q8D|B Chain B, Crystal Structure Of Jmj2d2a In Ternary Complex With
Histone H3-K36me2 And Succinate
pdb|2Q8E|A Chain A, Specificity And Mechanism Of Jmjd2a, A Trimethyllysine-
Specific Histone Demethylase
pdb|2Q8E|B Chain B, Specificity And Mechanism Of Jmjd2a, A Trimethyllysine-
Specific Histone Demethylase
Length = 352
Score = 135 bits (340), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 152/317 (47%), Gaps = 35/317 (11%)
Query: 37 AYYPTLQEFDDPFIYLQKIAPE-ASQFGICKIISPV--KASVSAADVLKKEIKGFEFGTY 93
+YPT++EF + Y+ I + A + G+ K++ P K S D+ I
Sbjct: 18 TFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYDDIDDLVI-------- 69
Query: 94 RQPLRLPKWNANDTGVFFS---GERKHTYDTFESEAIKMLKRQSPRLGDLPPSYVEKKFW 150
P + + +G+F ++ T F A K +PR + +E+K+W
Sbjct: 70 --PAPIQQLVTGQSGLFTQYNIQKKAMTVREFRKIA-NSDKYCTPRYSEF--EELERKYW 124
Query: 151 LEMTHGRKGTVEYGVNIEGSAFSSDPNDQLGKCKWHLKTLRGLPQSIFRFLEHIIPGITD 210
+T YG ++ G+ + ++ W++ LR + + + I G+
Sbjct: 125 KNLTFN---PPIYGADVNGTLYEKHVDE------WNIGRLRTILDLVEKESGITIEGVNT 175
Query: 211 PMLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVYSRDIL 270
P LY GM + FAWH ED L+SINY H G PK+WY VP H + E++A+
Sbjct: 176 PYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGF-----FP 230
Query: 271 SAAGEDGAFEVIAEKTTIFPPKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNGFNCG 330
+A AF + K T+ P +L G+ K Q+ GEF+ITFP YHAGF++GFNC
Sbjct: 231 GSAQSCEAF--LRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCA 288
Query: 331 EAVNFAIRDWFPFGEEA 347
E+ NFA R W +G++A
Sbjct: 289 ESTNFATRRWIEYGKQA 305
>pdb|2OQ6|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys9
pdb|2OQ6|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys9
pdb|2OQ7|A Chain A, The Crystal Structure Of Jmjd2a Complexed With Ni And
N-Oxalylglycine
pdb|2OQ7|B Chain B, The Crystal Structure Of Jmjd2a Complexed With Ni And
N-Oxalylglycine
pdb|2OS2|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys36
pdb|2OS2|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys36
pdb|2OT7|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Monomethylated At Lys9
pdb|2OT7|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Monomethylated At Lys9
pdb|2OX0|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Dimethylated At Lys9
pdb|2OX0|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Dimethylated At Lys9
pdb|2VD7|A Chain A, Crystal Structure Of Jmjd2a Complexed With Inhibitor
Pyridine-2,4-Dicarboxylic Acid
pdb|2VD7|B Chain B, Crystal Structure Of Jmjd2a Complexed With Inhibitor
Pyridine-2,4-Dicarboxylic Acid
pdb|3NJY|A Chain A, Crystal Structure Of Jmjd2a Complexed With 5-Carboxy-8-
Hydroxyquinoline
pdb|3NJY|B Chain B, Crystal Structure Of Jmjd2a Complexed With 5-Carboxy-8-
Hydroxyquinoline
pdb|2YBP|A Chain A, Jmjd2a Complexed With R-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBP|B Chain B, Jmjd2a Complexed With R-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBS|A Chain A, Jmjd2a Complexed With S-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBS|B Chain B, Jmjd2a Complexed With S-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|3PDQ|A Chain A, Crystal Structure Of Jmjd2a Complexed With Bipyridyl
Inhibitor
pdb|3PDQ|B Chain B, Crystal Structure Of Jmjd2a Complexed With Bipyridyl
Inhibitor
pdb|2YBK|A Chain A, Jmjd2a Complexed With R-2-Hydroxyglutarate
pdb|2YBK|B Chain B, Jmjd2a Complexed With R-2-Hydroxyglutarate
pdb|3U4S|A Chain A, Histone Lysine Demethylase Jmjd2a In Complex With T11c
Peptide Substrate Crosslinked To N-Oxalyl-D-Cysteine
pdb|3U4S|B Chain B, Histone Lysine Demethylase Jmjd2a In Complex With T11c
Peptide Substrate Crosslinked To N-Oxalyl-D-Cysteine
pdb|3RVH|A Chain A, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|3RVH|B Chain B, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|4GD4|A Chain A, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|4GD4|B Chain B, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|4AI9|A Chain A, Jmjd2a Complexed With Daminozide
pdb|4AI9|B Chain B, Jmjd2a Complexed With Daminozide
Length = 381
Score = 135 bits (340), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 153/316 (48%), Gaps = 33/316 (10%)
Query: 37 AYYPTLQEFDDPFIYLQKIAPE-ASQFGICKIISPV--KASVSAADVLKKEIKGFEFGTY 93
+YPT++EF + Y+ I + A + G+ K++ P K S D+ I
Sbjct: 38 TFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYDDIDDLVI-------- 89
Query: 94 RQPLRLPKWNANDTGVF--FSGERKHTYDTFESEAIKMLKRQSPRLGDLPPSYVEKKFWL 151
P + + +G+F ++ ++K + K +PR + +E+K+W
Sbjct: 90 --PAPIQQLVTGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTPRYSEF--EELERKYWK 145
Query: 152 EMTHGRKGTVEYGVNIEGSAFSSDPNDQLGKCKWHLKTLRGLPQSIFRFLEHIIPGITDP 211
+T YG ++ G+ + ++ W++ LR + + + I G+ P
Sbjct: 146 NLTFN---PPIYGADVNGTLYEKHVDE------WNIGRLRTILDLVEKESGITIEGVNTP 196
Query: 212 MLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVYSRDILS 271
LY GM + FAWH ED L+SINY H G PK+WY VP H + E++A+
Sbjct: 197 YLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGF-----FPG 251
Query: 272 AAGEDGAFEVIAEKTTIFPPKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNGFNCGE 331
+A AF + K T+ P +L G+ K Q+ GEF+ITFP YHAGF++GFNC E
Sbjct: 252 SAQSCEAF--LRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAE 309
Query: 332 AVNFAIRDWFPFGEEA 347
+ NFA R W +G++A
Sbjct: 310 STNFATRRWIEYGKQA 325
>pdb|2WWJ|A Chain A, Structure Of Jmjd2a Complexed With Inhibitor 10a
pdb|2WWJ|B Chain B, Structure Of Jmjd2a Complexed With Inhibitor 10a
Length = 348
Score = 135 bits (340), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 153/316 (48%), Gaps = 33/316 (10%)
Query: 37 AYYPTLQEFDDPFIYLQKIAPE-ASQFGICKIISPV--KASVSAADVLKKEIKGFEFGTY 93
+YPT++EF + Y+ I + A + G+ K++ P K S D+ I
Sbjct: 10 TFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYDDIDDLVI-------- 61
Query: 94 RQPLRLPKWNANDTGVF--FSGERKHTYDTFESEAIKMLKRQSPRLGDLPPSYVEKKFWL 151
P + + +G+F ++ ++K + K +PR + +E+K+W
Sbjct: 62 --PAPIQQLVTGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTPRYSEF--EELERKYWK 117
Query: 152 EMTHGRKGTVEYGVNIEGSAFSSDPNDQLGKCKWHLKTLRGLPQSIFRFLEHIIPGITDP 211
+T YG ++ G+ + ++ W++ LR + + + I G+ P
Sbjct: 118 NLTFN---PPIYGADVNGTLYEKHVDE------WNIGRLRTILDLVEKESGITIEGVNTP 168
Query: 212 MLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVYSRDILS 271
LY GM + FAWH ED L+SINY H G PK+WY VP H + E++A+
Sbjct: 169 YLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGF-----FPG 223
Query: 272 AAGEDGAFEVIAEKTTIFPPKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNGFNCGE 331
+A AF + K T+ P +L G+ K Q+ GEF+ITFP YHAGF++GFNC E
Sbjct: 224 SAQSCEAF--LRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAE 281
Query: 332 AVNFAIRDWFPFGEEA 347
+ NFA R W +G++A
Sbjct: 282 STNFATRRWIEYGKQA 297
>pdb|2GP3|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a
pdb|2GP3|B Chain B, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a
pdb|2GP5|A Chain A, Crystal Structure Of Catalytic Core Domain Of Jmjd2a
Complexed With Alpha-Ketoglutarate
pdb|2GP5|B Chain B, Crystal Structure Of Catalytic Core Domain Of Jmjd2a
Complexed With Alpha-Ketoglutarate
Length = 349
Score = 135 bits (339), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 152/317 (47%), Gaps = 35/317 (11%)
Query: 37 AYYPTLQEFDDPFIYLQKIAPE-ASQFGICKIISPV--KASVSAADVLKKEIKGFEFGTY 93
+YPT++EF + Y+ I + A + G+ K++ P K S D+ I
Sbjct: 15 TFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYDDIDDLVI-------- 66
Query: 94 RQPLRLPKWNANDTGVFFS---GERKHTYDTFESEAIKMLKRQSPRLGDLPPSYVEKKFW 150
P + + +G+F ++ T F A K +PR + +E+K+W
Sbjct: 67 --PAPIQQLVTGQSGLFTQYNIQKKAMTVREFRKIA-NSDKYCTPRYSEF--EELERKYW 121
Query: 151 LEMTHGRKGTVEYGVNIEGSAFSSDPNDQLGKCKWHLKTLRGLPQSIFRFLEHIIPGITD 210
+T YG ++ G+ + ++ W++ LR + + + I G+
Sbjct: 122 KNLTFN---PPIYGADVNGTLYEKHVDE------WNIGRLRTILDLVEKESGITIEGVNT 172
Query: 211 PMLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVYSRDIL 270
P LY GM + FAWH ED L+SINY H G PK+WY VP H + E++A+
Sbjct: 173 PYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGF-----FP 227
Query: 271 SAAGEDGAFEVIAEKTTIFPPKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNGFNCG 330
+A AF + K T+ P +L G+ K Q+ GEF+ITFP YHAGF++GFNC
Sbjct: 228 GSAQSCEAF--LRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCA 285
Query: 331 EAVNFAIRDWFPFGEEA 347
E+ NFA R W +G++A
Sbjct: 286 ESTNFATRRWIEYGKQA 302
>pdb|2XML|A Chain A, Crystal Structure Of Human Jmjd2c Catalytic Domain
pdb|2XML|B Chain B, Crystal Structure Of Human Jmjd2c Catalytic Domain
Length = 348
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 103/203 (50%), Gaps = 16/203 (7%)
Query: 145 VEKKFWLEMTHGRKGTVEYGVNIEGSAFSSDPNDQLGKCKWHLKTLRGLPQSIFRFLEHI 204
+E+K+W +T YG +I GS + G +W++ L + +
Sbjct: 120 LERKYWKNLTFV---APIYGADINGSIYDE------GVDEWNIARLNTVLDVVEEECGIS 170
Query: 205 IPGITDPMLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQV 264
I G+ P LY GM + FAWH ED L+SINY H G PK+WY +P H + E++A+
Sbjct: 171 IEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLERLAQG-- 228
Query: 265 YSRDILSAAGEDGAFEVIAEKTTIFPPKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFS 324
+ G + K T+ P +L G+ K Q+ GEF+ITFP YHAGF+
Sbjct: 229 -----FFPSSSQGCDAFLRHKMTLISPSVLKKYGIPFDKITQEAGEFMITFPYGYHAGFN 283
Query: 325 NGFNCGEAVNFAIRDWFPFGEEA 347
+GFNC E+ NFA W +G+ A
Sbjct: 284 HGFNCAESTNFATVRWIDYGKVA 306
>pdb|3OPT|A Chain A, Crystal Structure Of The Rph1 Catalytic Core With
A-Ketoglutarate
pdb|3OPW|A Chain A, Crystal Structure Of The Rph1 Catalytic Core
Length = 373
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 107/206 (51%), Gaps = 20/206 (9%)
Query: 144 YVEKKFWLEMTHGRKGTVEYGVNIEGSAFSSDPNDQLGKCKWHLKTLRGLPQSIFRFLEH 203
++E+ +W + T YG + GS F G W++ L +I +E
Sbjct: 167 FLEEYYWKTLNFT---TPMYGADTPGSIFPE------GLNVWNVAKL----PNILDHMET 213
Query: 204 IIPGITDPMLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQ 263
+PG+ D LY G+ + F+WH+ED L+SINY H GAPK WY +P +F K + Q
Sbjct: 214 KVPGVNDSYLYAGLWKASFSWHLEDQDLYSINYIHFGAPKQWYSIPQEDRFKFYKFMQEQ 273
Query: 264 VYSRDILSAAGEDGAFEVIAEKTTIFPPKILLDNGVSVYKAVQKPGEFVITFPRVYHAGF 323
E + K + PK+L +NG+ + V GEF+IT+P YHAGF
Sbjct: 274 F-------PEEAKNCPEFLRHKMFLASPKLLQENGIRCNEIVHHEGEFMITYPYGYHAGF 326
Query: 324 SNGFNCGEAVNFAIRDWFPFGEEAGK 349
+ G+N E+VNFA+ +W P G++AGK
Sbjct: 327 NYGYNLAESVNFALEEWLPIGKKAGK 352
>pdb|4A5A|A Chain A, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
pdb|4A5A|B Chain B, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
pdb|4A5A|C Chain C, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
pdb|4A5A|D Chain D, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
Length = 611
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 373 HEGTDIPSSVKATVLHQIRSLNNALFCLNNLKMPFDYL--QNSQGSFVCDLCKRDCYLAF 430
EGT +PSSV+A L + R L + + + F L +S G F+ +LC D +L
Sbjct: 266 QEGTVLPSSVRAVNLQRERLLPERYPSADVVSVSFMQLGMASSAGLFLKELCSNDEFLQG 325
Query: 431 TECKSCQRYTCLFHEFKSRHCSCG 454
C + CLF F+ + CS G
Sbjct: 326 GICSN----PCLFKGFQ-QSCSAG 344
>pdb|4A5B|A Chain A, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 1
(Ntpdase1)
pdb|4A5B|B Chain B, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 1
(Ntpdase1)
Length = 611
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 373 HEGTDIPSSVKATVLHQIRSLNNALFCLNNLKMPFDYL--QNSQGSFVCDLCKRDCYLAF 430
EGT +PSSV+A L + R L + + + F L +S G F+ +LC D +L
Sbjct: 266 QEGTVLPSSVRAVNLQRERLLPERYPSADVVSVSFMQLGMASSAGLFLKELCSNDEFLQG 325
Query: 431 TECKSCQRYTCLFHEFKSRHCSCG 454
C + CLF F+ + CS G
Sbjct: 326 GICSN----PCLFKGFQ-QSCSAG 344
>pdb|4A57|A Chain A, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|B Chain B, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|C Chain C, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|D Chain D, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A59|A Chain A, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|B Chain B, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|C Chain C, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|D Chain D, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
Length = 611
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 373 HEGTDIPSSVKATVLHQIRSLNNALFCLNNLKMPFDYL--QNSQGSFVCDLCKRDCYLAF 430
EGT +PSSV+A L + R L + + + F L +S G F+ +LC D +L
Sbjct: 266 QEGTVLPSSVRAVNLQRERLLPERYPSADVVSVSFMQLGMASSAGLFLKELCSNDEFLQG 325
Query: 431 TECKSCQRYTCLFHEFKSRHCSCG 454
C + CLF F+ + CS G
Sbjct: 326 GICSN----PCLFKGFQ-QSCSAG 344
>pdb|3PKV|A Chain A, Crystal Structure Of Toxoflavin Lyase (Tfla)
pdb|3PKW|A Chain A, Crystal Structure Of Toxoflavin Lyase (Tfla) Bound To
Mn(Ii)
pdb|3PKX|A Chain A, Crystal Structure Of Toxoflavin Lyase (Tfla) Bound To
Mn(Ii) And Toxoflavin
Length = 252
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 255 QFEKVARNQVYSRDILSAAGEDGAFEVIAEKT-TIFPPKILLDNGVSVYKAVQKPGEFVI 313
Q E N + +D+ G G + +E+ I+P ++ LDNGVS+ A+ + GE VI
Sbjct: 187 QIEPAGLNFIGDQDLFLLLGPPGRRWLFSERVAVIYPLQMELDNGVSL--AITETGELVI 244
>pdb|3RJZ|A Chain A, X-Ray Crystal Structure Of The Putative N-Type Atp
Pyrophosphatase From Pyrococcus Furiosus, The Northeast
Structural Genomics Target Pfr23
pdb|3RK0|A Chain A, X-Ray Crystal Structure Of The Putative N-Type Atp
Pyrophosphatase (Pf0828) In Complex With Amp From
Pyrococcus Furiosus, Northeast Structural Genomics
Consortium Target Pfr23
pdb|3RK1|A Chain A, 'x-Ray Crystal Structure Of The Putative N-Type Atp
Pyrophosphatase (Pf0828) In Complex With Atp From
Pyrococcus Furiosus, Northeast Structural Genomics
Consortium Target Pfr23
pdb|3RK1|B Chain B, 'x-Ray Crystal Structure Of The Putative N-Type Atp
Pyrophosphatase (Pf0828) In Complex With Atp From
Pyrococcus Furiosus, Northeast Structural Genomics
Consortium Target Pfr23
Length = 237
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 240 GAPKTWYG-VPGHHALQFEKVARNQVYSRDILSAAGEDGAFEVIAEKTTIFPPKILLDNG 298
G ++W G + AL+ E + N+ Y + AGE G FE +F KI++D
Sbjct: 151 GLDESWLGRILDESALE-ELITLNEKYK---VHVAGEGGEFETFVLDXPLFKYKIVVDKA 206
Query: 299 VSVYKAVQKPGEFVI 313
V++ G+ +I
Sbjct: 207 KKVWEPCTSSGKLII 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,325,771
Number of Sequences: 62578
Number of extensions: 646940
Number of successful extensions: 1230
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1204
Number of HSP's gapped (non-prelim): 20
length of query: 499
length of database: 14,973,337
effective HSP length: 103
effective length of query: 396
effective length of database: 8,527,803
effective search space: 3377009988
effective search space used: 3377009988
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)