Query 043353
Match_columns 499
No_of_seqs 247 out of 713
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 04:12:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043353.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043353hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0958 DNA damage-responsive 100.0 1.3E-78 2.8E-83 646.5 16.4 307 29-365 9-321 (690)
2 KOG1246 DNA-binding protein ju 100.0 4.4E-62 9.5E-67 559.1 16.7 443 31-483 86-605 (904)
3 PF02373 JmjC: JmjC domain, hy 100.0 6.1E-34 1.3E-38 247.7 9.5 114 212-335 1-114 (114)
4 smart00545 JmjN Small domain f 99.8 5.5E-20 1.2E-24 133.0 3.6 42 34-75 1-42 (42)
5 PF02375 JmjN: jmjN domain; I 99.6 8.5E-17 1.8E-21 111.1 2.7 34 36-69 1-34 (34)
6 smart00558 JmjC A domain famil 99.4 3.3E-13 7.1E-18 104.2 4.4 56 184-242 2-57 (57)
7 PF02928 zf-C5HC2: C5HC2 zinc 99.4 3.7E-13 7.9E-18 103.3 3.4 52 419-472 1-54 (54)
8 KOG1246 DNA-binding protein ju 99.0 2.5E-10 5.4E-15 132.5 3.5 303 159-477 579-902 (904)
9 PF13621 Cupin_8: Cupin-like d 96.9 0.0053 1.2E-07 59.8 10.0 113 210-338 132-248 (251)
10 KOG2131 Uncharacterized conser 96.7 0.0018 3.8E-08 67.1 5.0 104 211-337 200-303 (427)
11 KOG2130 Phosphatidylserine-spe 93.8 0.046 1E-06 55.9 2.9 131 194-342 165-303 (407)
12 KOG1356 Putative transcription 92.7 0.19 4.2E-06 57.3 6.0 116 243-363 740-859 (889)
13 PF08007 Cupin_4: Cupin superf 82.5 5 0.00011 41.6 8.1 105 208-344 113-218 (319)
14 smart00154 ZnF_AN1 AN1-like Zi 53.8 6.9 0.00015 28.0 1.0 35 419-454 1-35 (39)
15 COG1791 Uncharacterized conser 43.0 23 0.0005 33.7 3.0 43 296-343 112-161 (181)
16 KOG1356 Putative transcription 30.1 32 0.0007 40.0 2.1 63 383-446 196-259 (889)
17 COG2461 Uncharacterized conser 29.5 33 0.00071 36.7 1.9 44 33-78 198-241 (409)
18 COG1917 Uncharacterized conser 22.8 90 0.002 27.4 3.3 30 307-336 87-118 (131)
19 PF13601 HTH_34: Winged helix 21.6 1E+02 0.0022 25.3 3.1 37 226-262 38-75 (80)
20 PF03079 ARD: ARD/ARD' family; 21.5 73 0.0016 29.8 2.5 23 300-322 113-135 (157)
No 1
>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair]
Probab=100.00 E-value=1.3e-78 Score=646.51 Aligned_cols=307 Identities=32% Similarity=0.564 Sum_probs=263.1
Q ss_pred cCCCCCCCeeeCChhhhcCHHHHHHhhcc-ccccCCeeEEcCCCCccccchhhhcccccCceeeeeccCCCCCCccCCCC
Q 043353 29 THKISDCPAYYPTLQEFDDPFIYLQKIAP-EASQFGICKIISPVKASVSAADVLKKEIKGFEFGTYRQPLRLPKWNANDT 107 (499)
Q Consensus 29 ~~~~~~~Pvf~PT~eEF~dp~~YI~~i~~-~a~~~GI~KIVPP~~w~~p~~~~l~~~~~~~~f~tr~Q~i~~~~~~~~~~ 107 (499)
+...+++||||||||||+||.+||++|++ +|+++||+|||||++|++.... .+.+++++...+|++- .+..
T Consensus 9 i~ps~~I~tF~PtmeEF~dF~~yi~~IEs~G~h~aGlaKVipPkeWk~r~~~---~di~di~I~~PiqQ~v-----~g~~ 80 (690)
T KOG0958|consen 9 INPSDGIPTFYPTMEEFADFSAYIAYIESQGAHRAGLAKVIPPKEWKPRLMY---DDIDDIKIPAPIQQVV-----TGQG 80 (690)
T ss_pred cCCCCCcceeCcCHHHHHhHHHHHHHHHhccchhcCeeeeeCCccCCccccc---CchhheecChhHHHHh-----hccC
Confidence 35577999999999999999999999987 5667999999999999987532 2456788887776542 2233
Q ss_pred cee---eec-CcccCHHHHHHHHHHHHHhhCCCCC-CCChhHHHHHhhhhccCCCccceeecccCCCCCCCCCCCCCcCC
Q 043353 108 GVF---FSG-ERKHTYDTFESEAIKMLKRQSPRLG-DLPPSYVEKKFWLEMTHGRKGTVEYGVNIEGSAFSSDPNDQLGK 182 (499)
Q Consensus 108 ~~~---~~~-~~~~tl~~f~~~A~~~~~~~~~~~~-~~~~~~vE~efW~~v~~~~~~~v~YgaD~~gS~f~~~~~~~~~~ 182 (499)
|.| +++ .+.|++.+|++||+. .+|++++ ...-+|+|++|||.+++. .+.||||+.||+|+.+ .
T Consensus 81 G~F~~~Ni~~~kam~v~q~r~lAns---~~y~tpr~~~d~~dle~kYWKnltf~---~PiYGaD~~gSi~~~~------~ 148 (690)
T KOG0958|consen 81 GLFTQYNIQDKKAMTVRQFRDLANS---DKYCTPRGSQDFEDLEQKYWKNLTFD---SPIYGADINGSIYDED------L 148 (690)
T ss_pred ceEEEeehhhccccChhhhhhhhhh---cccCCCcccccHHHHHHHHHhcccCC---CCcccccCCCccCccc------c
Confidence 555 334 789999999999986 7788877 788899999999999985 6799999999999854 6
Q ss_pred CCcccCCCCCCCCcccccccCCCCCCccceEEeeccccccceeecCCCceeEEEEeeCCCceEEeeCCchHHHHHHHHHh
Q 043353 183 CKWHLKTLRGLPQSIFRFLEHIIPGITDPMLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARN 262 (499)
Q Consensus 183 ~~WNL~nlp~~~~slL~~~~~~i~Gv~~p~lyiGm~~S~f~WH~ED~~l~SiNy~H~GapK~WY~VP~~~~~kfe~l~~~ 262 (499)
..||+++|+...+- ...+..|.|||||+||+|||.++|+||+||++||||||+|||+||+||+||+++.++||+++.+
T Consensus 149 ~~WNi~~L~tild~--~~~~~~i~gvNt~yLyfGmwKttFaWHtEdmDLySINyLHFGaPK~WYaIP~eh~~rfekla~~ 226 (690)
T KOG0958|consen 149 DEWNIARLDTILDL--EECGIIIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGAPKQWYAIPPEHGDRFEKLASE 226 (690)
T ss_pred cccccccccchhch--hhcceeecccCccceeeeeeecccccccCCccceeeeeeecCCCcceeecCHHHHHHHHHHHHh
Confidence 79999999863321 4778899999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhhhhhcCCCChhhhhcccccccChhhHhhCCCceEEeeeCCCcEEEEcCCceeeeeecccceeeeeccccccccc
Q 043353 263 QVYSRDILSAAGEDGAFEVIAEKTTIFPPKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNGFNCGEAVNFAIRDWFP 342 (499)
Q Consensus 263 ~~~~~~l~~~~~~~~~~~~l~~~~~~~~P~~L~~~gIpv~r~~Q~pGefVvtfP~aYH~gfn~Gfn~aEavNfa~~~Wl~ 342 (499)
.++.. -.+|++||+|++++++|.+|+++|||+++++|++||||||||++||+|||+||||+|++|||++.|++
T Consensus 227 ~fp~~-------~~~C~aFLRHK~~LiSP~~LkqnGIpfn~ivqeagEFmITFPygyHaGFN~GfN~aES~nFat~Rwi~ 299 (690)
T KOG0958|consen 227 LFPDS-------SQGCPAFLRHKMTLISPSVLKQNGIPFNRIVQEAGEFMITFPYGYHAGFNHGFNCAESTNFATPRWID 299 (690)
T ss_pred hCCcc-------ccCCHHHHhhcccccCHHHHHHcCCCcceeeecCCcEEEecCcccccccccchhhhhhhcccchhhhh
Confidence 87531 24699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhcCCCCCcCHHHH
Q 043353 343 FGEEAGKRYARLHKMVILPYQEL 365 (499)
Q Consensus 343 ~g~~a~~~y~~~~~~~~~s~~~L 365 (499)
+|+.|...-. .+..--|+|+.+
T Consensus 300 YgK~a~~C~C-~~d~vkism~~f 321 (690)
T KOG0958|consen 300 YGKQALLCSC-RSDSVKISMDPF 321 (690)
T ss_pred hccccccccc-ccceeeeechhh
Confidence 9999985422 122223555554
No 2
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=100.00 E-value=4.4e-62 Score=559.11 Aligned_cols=443 Identities=32% Similarity=0.570 Sum_probs=344.6
Q ss_pred CCCCCCeeeCChhhhcCHHHHHHhhccccccCCeeEEcCCCCccccchhhhcccccCceeeee-ccCCCCC---------
Q 043353 31 KISDCPAYYPTLQEFDDPFIYLQKIAPEASQFGICKIISPVKASVSAADVLKKEIKGFEFGTY-RQPLRLP--------- 100 (499)
Q Consensus 31 ~~~~~Pvf~PT~eEF~dp~~YI~~i~~~a~~~GI~KIVPP~~w~~p~~~~l~~~~~~~~f~tr-~Q~i~~~--------- 100 (499)
.....+.+.+....+.+...|+.++...++.+|+|.++||..|+++.+..-.....+.+|.++ +|+++..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 165 (904)
T KOG1246|consen 86 ISNLKPLLLSIPKNFKDKLLYISKLKLRAEFYGICEKLPPPTSKPKEPLKGKQNWFSSGFDQREVEFIDYPQCNTCSKGK 165 (904)
T ss_pred cccccccccccCccccchhhccccccccccccccccccCCcccCCCCcCCcccccccCCCCCcccccccchhhhccccCC
Confidence 344567788889999999999999999999999999999999998876432222233445555 4444211
Q ss_pred -----------------------------CccC-----------CCCceeeecCcccCHHHHHHHHHHHHHhhCCCCCCC
Q 043353 101 -----------------------------KWNA-----------NDTGVFFSGERKHTYDTFESEAIKMLKRQSPRLGDL 140 (499)
Q Consensus 101 -----------------------------~~~~-----------~~~~~~~~~~~~~tl~~f~~~A~~~~~~~~~~~~~~ 140 (499)
.|.. ....+|....+.||+..|+++|+. ++..|+.....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~yt~~~f~~~~~~-~~~~~~~~~~~ 244 (904)
T KOG1246|consen 166 EEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPESKPNYKFGFEQGSREYTLPKFEEYADN-FKKDYFPKSKN 244 (904)
T ss_pred CccceecccccCcccccccCCCCCcCCcCcccCCcccccccCCcccccCcCCCCCccccchhhhHhhh-hhccccccccC
Confidence 0100 112334455678999999999985 55555543322
Q ss_pred ---ChhHHHHHhhhhccCC-CccceeecccCC----CCCCCCC--------CCCCcCCCCcccCCCCCCCCcccccccCC
Q 043353 141 ---PPSYVEKKFWLEMTHG-RKGTVEYGVNIE----GSAFSSD--------PNDQLGKCKWHLKTLRGLPQSIFRFLEHI 204 (499)
Q Consensus 141 ---~~~~vE~efW~~v~~~-~~~~v~YgaD~~----gS~f~~~--------~~~~~~~~~WNL~nlp~~~~slL~~~~~~ 204 (499)
+++++|++||++|... ..++|+||+|+. ||+|+.. ..++|..++|||+++|.+.+|+|+|.+.+
T Consensus 245 ~~~~~~~vE~e~w~~v~~~~~~~~~~~g~d~~~~~~~s~~~~~~~~~~~~~~~~~y~~s~wnL~~i~~~~~svl~~~~~d 324 (904)
T KOG1246|consen 245 SPDSTEDVEKEFWRLVASNLESVEVLYGADLSTKEFGSGFPKSASGPLLGSEAEKYSNSGWNLNNIPRLEGSVLSHIDTD 324 (904)
T ss_pred CCCchHHHHHHHHHhhcccccceeeeeccchhhccccccccccCCCCCCCcchhhhccCcccccccccCCccccccccCC
Confidence 2569999999999876 346889999998 4555431 12468899999999999999999999999
Q ss_pred CCCCccceEEeeccccccceeecCCCceeEEEEeeCCCceEEeeCCchHHHHHHHHHhhccchhhhhhcCCCChhhhhcc
Q 043353 205 IPGITDPMLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVYSRDILSAAGEDGAFEVIAE 284 (499)
Q Consensus 205 i~Gv~~p~lyiGm~~S~f~WH~ED~~l~SiNy~H~GapK~WY~VP~~~~~kfe~l~~~~~~~~~l~~~~~~~~~~~~l~~ 284 (499)
|+|+++||+|+||+||+||||+|||.+||+||+|+|+||+||+||++++++||+++++..+ +++. .+++.+++
T Consensus 325 i~g~~~p~l~~gm~fs~~~wh~ed~~~~slny~h~g~pk~wy~v~~~~ae~~e~~~~~~~p--~~~~-----~~pd~~~~ 397 (904)
T KOG1246|consen 325 ISGVTVPWLYIGMCFSTFCWHVEDHSLYSLNYLHLGEPKTWYSVPGSAAEKFEKAMNKLSP--GLFI-----EQPDLLHA 397 (904)
T ss_pred cCccccccccccccccccccccCCccccccchhhcCCceEEEecCcchHHHHHHHHHhhCC--cccc-----cCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999998864 3432 35789999
Q ss_pred cccccChhhHhhCCCceEEeeeCCCcEEEEcCCceeeeeecccceeeeecccccccccchHHHHHHHHhcCCCCCcCHHH
Q 043353 285 KTTIFPPKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNGFNCGEAVNFAIRDWFPFGEEAGKRYARLHKMVILPYQE 364 (499)
Q Consensus 285 ~~~~~~P~~L~~~gIpv~r~~Q~pGefVvtfP~aYH~gfn~Gfn~aEavNfa~~~Wl~~g~~a~~~y~~~~~~~~~s~~~ 364 (499)
..++++|..|.++||||+|++|+|||||||||++||+|||+|||++|+|||||.+|+++|+.+++.|+...+.++|||++
T Consensus 398 ~~~~~~p~~l~~~gvpv~~~~q~~ge~vitfP~~Y~~g~~~gf~~~e~vn~ap~dwl~~gr~~~~~~~~~~~~~lfs~~~ 477 (904)
T KOG1246|consen 398 LVTLMSPNFLTDEGVPVYRTVQNPGEFVITFPRAYHAGFNCGFNFAEAVNFAPSDWLPVGRGAAEAYSLLLRLSLFSHDE 477 (904)
T ss_pred cccccCcchhhcCCCCceecccCCCCEeecCCCeeeecccccccHHHhcccCCcchhHHHHHHHHHHHhhccCCccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcccCCChhh---HHHHHHH---HHHHHHHHH--HHHhhc-CCCCcccccCccccccccccccceeeEEEeecc
Q 043353 365 LLFKEVSEHEGTDIPS---SVKATVL---HQIRSLNNA--LFCLNN-LKMPFDYLQNSQGSFVCDLCKRDCYLAFTECKS 435 (499)
Q Consensus 365 Ll~~~a~~~~~~~~~~---~~~~~~~---~~~~~~~~~--~~~l~~-~~~~~~~~~~~~~~~~C~~C~~~~fls~v~c~c 435 (499)
|++.+|.+........ ..+.... .....+... ...+.+ .+...+...++..+++|..|+++||++++.|+|
T Consensus 478 l~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ck~~~~l~~~~~~c 557 (904)
T KOG1246|consen 478 LALLNAENPVKIRKQLSLASDKNDDLAGESKKWLEESGRSKLVIEKYERYLLESLPDDMLERQCEACKRNCFLSEIECKC 557 (904)
T ss_pred HHHhccccchhhhhhhccccccchhhhchhhhhhhhcccchhHHHHHHHHHHHhccchhhHHHHHHhcccHhhhhhhhcc
Confidence 9999997643211100 0000000 000000000 000011 111111112222389999999999999999998
Q ss_pred CC-ceeecccccccccCCCC-CCeEEEEEcChHHHHHHHHHHhchhhhhh
Q 043353 436 CQ-RYTCLFHEFKSRHCSCG-YNRVVLLRKDIQEVEVVAKKFEEEEIMSR 483 (499)
Q Consensus 436 ~~-~~~CL~H~~~~~~c~c~-~~~~l~~ry~~~eL~~~~~~~e~~~~~~~ 483 (499)
.+ +..|+.|.. .+|+|. ...+++|||++++|.+++.+++++++..+
T Consensus 558 ~~~~~~cl~h~~--~~~~~~~~~~~l~~r~~id~l~~~~~k~~~~~~~~~ 605 (904)
T KOG1246|consen 558 KPKKLECLSHYK--KLCSCPGTDKTLLLRTNIDELDALLDKLQLHELSKL 605 (904)
T ss_pred cccccccccchh--hcCCCCccccEEEEecchhHHHHHhhhhhhhhhhcc
Confidence 86 789999975 468999 79999999999999999999999977643
No 3
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=100.00 E-value=6.1e-34 Score=247.70 Aligned_cols=114 Identities=46% Similarity=0.734 Sum_probs=98.2
Q ss_pred eEEeeccccccceeecCCCceeEEEEeeCCCceEEeeCCchHHHHHHHHHhhccchhhhhhcCCCChhhhhcccccccCh
Q 043353 212 MLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVYSRDILSAAGEDGAFEVIAEKTTIFPP 291 (499)
Q Consensus 212 ~lyiGm~~S~f~WH~ED~~l~SiNy~H~GapK~WY~VP~~~~~kfe~l~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~P 291 (499)
|||+||.+|+++||+||+.++||||+|+|++|+||+||++++++|++++++... ..+++++.++..+++|
T Consensus 1 ~~~ig~~~s~t~~H~e~~~~~sv~~~~~g~~k~W~~v~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~p 70 (114)
T PF02373_consen 1 WLYIGMKGSYTPWHIEDNGLSSVNYHHFGGSKVWYIVPPEDADKFEKFLRSKES----------QNCPQFLDHKNIFVSP 70 (114)
T ss_dssp EEEEE-TTEEEEEEE-GGG-EEEEEEEEESEEEEEEE-GGGHHHHHHHHHHHHH----------HHSTTGGCTGGEEEGH
T ss_pred CEEEeCCCcCCCcEecCCCCceeeeeccCcceEeEEechhhhhhHHHHHhhccc----------ccccccccccccccce
Confidence 799999999999999999999999999999999999999999999999987621 1245778999999999
Q ss_pred hhHhhCCCceEEeeeCCCcEEEEcCCceeeeeecccceeeeecc
Q 043353 292 KILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNGFNCGEAVNF 335 (499)
Q Consensus 292 ~~L~~~gIpv~r~~Q~pGefVvtfP~aYH~gfn~Gfn~aEavNf 335 (499)
+.|+++|||+++++|+|||+|||+||+||+++|.|+|++|||||
T Consensus 71 ~~l~~~gi~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i~~a~Nf 114 (114)
T PF02373_consen 71 EQLKKAGIPVYRFVQKPGEFVFIPPGAYHQVFNLGDNISEAVNF 114 (114)
T ss_dssp HHHHHTTS--EEEEEETT-EEEE-TT-EEEEEESSSEEEEEEEE
T ss_pred eeeeccCcccccceECCCCEEEECCCceEEEEeCCceEEEEecC
Confidence 99999999999999999999999999999999999999999998
No 4
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=99.79 E-value=5.5e-20 Score=133.03 Aligned_cols=42 Identities=43% Similarity=1.030 Sum_probs=40.7
Q ss_pred CCCeeeCChhhhcCHHHHHHhhccccccCCeeEEcCCCCccc
Q 043353 34 DCPAYYPTLQEFDDPFIYLQKIAPEASQFGICKIISPVKASV 75 (499)
Q Consensus 34 ~~Pvf~PT~eEF~dp~~YI~~i~~~a~~~GI~KIVPP~~w~~ 75 (499)
+||||+||+|||+||++||++|++.|++|||||||||++|+|
T Consensus 1 eiPvf~Pt~eEF~Dp~~yi~~i~~~~~~yGi~KIvPP~~w~p 42 (42)
T smart00545 1 EIPVFYPTMEEFKDPLAYISKIRPQAEKYGICKVVPPKSWKP 42 (42)
T ss_pred CCCeEcCCHHHHHCHHHHHHHHHHHHhhCCEEEEECCCCCCc
Confidence 699999999999999999999999999999999999999985
No 5
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.64 E-value=8.5e-17 Score=111.10 Aligned_cols=34 Identities=50% Similarity=1.211 Sum_probs=27.7
Q ss_pred CeeeCChhhhcCHHHHHHhhccccccCCeeEEcC
Q 043353 36 PAYYPTLQEFDDPFIYLQKIAPEASQFGICKIIS 69 (499)
Q Consensus 36 Pvf~PT~eEF~dp~~YI~~i~~~a~~~GI~KIVP 69 (499)
||||||+|||+||++||++|++.|++||||||||
T Consensus 1 Pvf~Pt~eEF~dp~~yi~~i~~~g~~~Gi~KIvP 34 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIKYISSIEPEGEKYGICKIVP 34 (34)
T ss_dssp EEE---HHHHS-HHHHHHHHHHTTGGGSEEEE--
T ss_pred CcccCCHHHHhCHHHHHHHHHHHHHHCCEEEecC
Confidence 8999999999999999999999999999999998
No 6
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=99.38 E-value=3.3e-13 Score=104.21 Aligned_cols=56 Identities=36% Similarity=0.495 Sum_probs=53.6
Q ss_pred CcccCCCCCCCCcccccccCCCCCCccceEEeeccccccceeecCCCceeEEEEeeCCC
Q 043353 184 KWHLKTLRGLPQSIFRFLEHIIPGITDPMLYIGMLFSMFAWHVEDHYLHSINYHHSGAP 242 (499)
Q Consensus 184 ~WNL~nlp~~~~slL~~~~~~i~Gv~~p~lyiGm~~S~f~WH~ED~~l~SiNy~H~Gap 242 (499)
.||++++|. .+++|++++.+++|+++||+|+||++|+|+||+|++++ +||+|.|+.
T Consensus 2 ~~~l~~lP~-~~~ll~~~~~~~~~~~~~~~~~G~~~s~t~~H~d~~~~--~n~~~~~~~ 57 (57)
T smart00558 2 LNNLAKLPF-KLNLLSDLPEDILGPDVPYLYMGMAGSVTPWHIDDYDL--VNYLHQGAG 57 (57)
T ss_pred cchhhhCCC-cchHHHHCCcccCCCCcceEEEeCCCCccceeEcCCCe--EEEEEecCC
Confidence 799999999 88999999999999999999999999999999999999 999999973
No 7
>PF02928 zf-C5HC2: C5HC2 zinc finger; InterPro: IPR004198 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a predicted zinc finger with eight potential zinc ligand binding residues. This domain is found in Jumonji [], and may have a DNA binding function. The mouse jumonji protein is required for neural tube formation, and is essential for normal heart development. It also plays a role in the down-regulation of cell proliferation signalling. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005634 nucleus
Probab=99.36 E-value=3.7e-13 Score=103.28 Aligned_cols=52 Identities=35% Similarity=0.729 Sum_probs=47.6
Q ss_pred ccccccceeeEEEeeccC-CceeecccccccccCCCC-CCeEEEEEcChHHHHHHH
Q 043353 419 CDLCKRDCYLAFTECKSC-QRYTCLFHEFKSRHCSCG-YNRVVLLRKDIQEVEVVA 472 (499)
Q Consensus 419 C~~C~~~~fls~v~c~c~-~~~~CL~H~~~~~~c~c~-~~~~l~~ry~~~eL~~~~ 472 (499)
|..|++++|||+|.|+|. ++++||+|+. .+|.|+ ++++|+||||++||++++
T Consensus 1 C~~Ck~~~yLS~v~C~C~~~~~~CL~H~~--~~c~C~~~~~~L~yR~~~~eL~~lv 54 (54)
T PF02928_consen 1 CSICKAYCYLSAVTCSCKPDKVVCLRHAK--ELCSCPCSNHTLRYRYDDEELESLV 54 (54)
T ss_pred CcccCCchhhcccccCCCCCcEEccccch--hhcCCCCCCeEEEEeCCHHHHHHhC
Confidence 889999999999999985 7899999996 478998 899999999999999875
No 8
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=98.97 E-value=2.5e-10 Score=132.46 Aligned_cols=303 Identities=15% Similarity=0.117 Sum_probs=199.1
Q ss_pred cceeecccCCCC-CCCC-CCCCCcCCCCcccCCCCCCC-----C-cccccccCCCCCCccceEEeeccccccceeecCCC
Q 043353 159 GTVEYGVNIEGS-AFSS-DPNDQLGKCKWHLKTLRGLP-----Q-SIFRFLEHIIPGITDPMLYIGMLFSMFAWHVEDHY 230 (499)
Q Consensus 159 ~~v~YgaD~~gS-~f~~-~~~~~~~~~~WNL~nlp~~~-----~-slL~~~~~~i~Gv~~p~lyiGm~~S~f~WH~ED~~ 230 (499)
..+.||.+++.. .... .........+|...-...++ + +++.+++..+.||++..+|+...++.+.-|.|+..
T Consensus 579 ~~l~~r~~id~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~~~~n~~~~~~k~~~~rt~~~~~n~~ 658 (904)
T KOG1246|consen 579 KTLLLRTNIDELDALLDKLQLHELSKLPWFGRVDGALPSLGFRGANLLEHAGEKILGMNTVQCYMKVPGSRTTAHQENSA 658 (904)
T ss_pred cEEEEecchhHHHHHhhhhhhhhhhcchhhhhhhhhhcccccCCcchHHHHHHHhhcccccceeeccccccchhHHHHHH
Confidence 356777777621 1100 00111224577766554433 4 89999999999999999999999999999999999
Q ss_pred ceeEEEEeeCCCceEEeeCCchHHHHHHHHHhhccchhhhhhcCCCChhhhhccccccc-ChhhHhhCCCceEEeeeCCC
Q 043353 231 LHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVYSRDILSAAGEDGAFEVIAEKTTIF-PPKILLDNGVSVYKAVQKPG 309 (499)
Q Consensus 231 l~SiNy~H~GapK~WY~VP~~~~~kfe~l~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~-~P~~L~~~gIpv~r~~Q~pG 309 (499)
+.|+|.++..+.+.|++||.++...+++++.+.-- .++. ...+. .-..|...+|++++++|++|
T Consensus 659 ~~s~~~n~~p~~~~~~~v~~~~~~~~~~~~~~~~~--------------~~~~-~~~w~~~~~~l~~~~i~~~~~~~~~~ 723 (904)
T KOG1246|consen 659 LASININLGPGDCVWFAVPLEYWGVVEDACEKHNL--------------KYSD-SSVWPSSEEELLNLVIPVQKFIQKAG 723 (904)
T ss_pred HhhhhccCCcccceeeecccchhHHHHHHHhhccc--------------cccc-hhccchhhHHHHhccchHHHHHhccc
Confidence 99999999988999999999999999888876521 0111 12233 45678899999999999999
Q ss_pred cEEEEcCCceeeeeecccceeeeeccccccccc--chHHHHHHHHhcCCCCCcCHHHHHHHHHHccc---CCChhhHHHH
Q 043353 310 EFVITFPRVYHAGFSNGFNCGEAVNFAIRDWFP--FGEEAGKRYARLHKMVILPYQELLFKEVSEHE---GTDIPSSVKA 384 (499)
Q Consensus 310 efVvtfP~aYH~gfn~Gfn~aEavNfa~~~Wl~--~g~~a~~~y~~~~~~~~~s~~~Ll~~~a~~~~---~~~~~~~~~~ 384 (499)
++|.++.|.|||....|+..+-++|.+...--+ .....+.+..+......+++..+-|++|+... +.......+.
T Consensus 724 ~~~~~~~~~~~~~~~~~~~~nv~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 803 (904)
T KOG1246|consen 724 DLVYVGNGTVHWVQVLGFCINVSWNVSESTFAQLALALFRHDHNIESKHPSSVPMSFKVWEMAEKEVMVSDRKRFEAKKL 803 (904)
T ss_pred cccccCCceEEEeeecCccccceecccccchhhhhcchhhhhhhhhccCcccchhhhhhhhHhhcchhhcchhHHHHHHH
Confidence 999999999999999999999999999977543 33344444445577889999999999998632 1111112222
Q ss_pred HHHHHHHHHHHHHHHhhcCC--CCcccccCccccccccccccceeeEEEeeccC--CceeecccccccccC-CCC--CCe
Q 043353 385 TVLHQIRSLNNALFCLNNLK--MPFDYLQNSQGSFVCDLCKRDCYLAFTECKSC--QRYTCLFHEFKSRHC-SCG--YNR 457 (499)
Q Consensus 385 ~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~C~~C~~~~fls~v~c~c~--~~~~CL~H~~~~~~c-~c~--~~~ 457 (499)
++.+.+.............. .....-...+..+.|+.|...++-....-... ...+|+.+..+. -| .+. ...
T Consensus 804 c~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~ 882 (904)
T KOG1246|consen 804 CLKRSLAKSQLECELAIDEFHEICVAVPEKVELSHLCSRCERPRLAVIFVLDPNLKPTPYRVLENEKL-RCTIEQAIWLQ 882 (904)
T ss_pred hhhhhhhhhhhhHHHHHhhhhheecccCCCccccchhhhccccchheeeeeccCCCCCcccccccccc-ccchhcchHHH
Confidence 22222221111111111111 11100111224569999999999766554443 346666664321 11 111 244
Q ss_pred EEEEEcChHHHHHHHHHHhc
Q 043353 458 VVLLRKDIQEVEVVAKKFEE 477 (499)
Q Consensus 458 ~l~~ry~~~eL~~~~~~~e~ 477 (499)
+++.+++..+|...+++++.
T Consensus 883 ~~~~~~~~~~~~~~~d~~~~ 902 (904)
T KOG1246|consen 883 VALQQFSSEDLSLILDAFHL 902 (904)
T ss_pred HHHHhhhhhhhhhhhhhccc
Confidence 56677888888888777653
No 9
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=96.94 E-value=0.0053 Score=59.80 Aligned_cols=113 Identities=19% Similarity=0.230 Sum_probs=66.7
Q ss_pred cceEEeeccccccceeecCCCceeEEEEeeCCCceEEeeCCchHHHHHHHHHhhccchhhhhhcCCC-Chhhhhcccccc
Q 043353 210 DPMLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVYSRDILSAAGED-GAFEVIAEKTTI 288 (499)
Q Consensus 210 ~p~lyiGm~~S~f~WH~ED~~l~SiNy~H~GapK~WY~VP~~~~~kfe~l~~~~~~~~~l~~~~~~~-~~~~~l~~~~~~ 288 (499)
..+|+||..+|.+.+|.+. ..+++-+..|. |.|+-+||++...+ +...... .+.. ...+.. ....-
T Consensus 132 ~~~l~ig~~gs~t~lH~D~--~~n~~~~i~G~-K~~~L~pP~~~~~l--------~~~~~~~-~~~~~~~~d~~-~~d~~ 198 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP--SHNLLAQIRGR-KRWILFPPDDSPNL--------YPRPDSH-GGTVFSWVDPD-NPDLE 198 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S--SEEEEEEEESE-EEEEEE-GGGGGGC--------TBETTTS-T-TCBBSS-TT-S--TT
T ss_pred ccEEEEeCCCceeeeeECc--hhhhhhccCCC-EEEEEECCcccccc--------ccceecc-cccceeeeecc-Chhhh
Confidence 5679999999999999988 45777777885 99999999987533 1100000 0000 001110 00001
Q ss_pred cChhhHhhCCCceEEeeeCCCcEEEEcCCceeeeeec---ccceeeeeccccc
Q 043353 289 FPPKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSN---GFNCGEAVNFAIR 338 (499)
Q Consensus 289 ~~P~~L~~~gIpv~r~~Q~pGefVvtfP~aYH~gfn~---Gfn~aEavNfa~~ 338 (499)
..|. +. .++.+.++++|||.+++-+|-+|.+.|. ++|++-.++|-+.
T Consensus 199 ~~p~-~~--~~~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~~ 248 (251)
T PF13621_consen 199 RFPK-FR--KAPPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRTP 248 (251)
T ss_dssp T-CG-GG--G--EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEESS
T ss_pred hhhh-hc--cCceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEeccc
Confidence 1122 22 2389999999999999999999999999 3677776666543
No 10
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=96.74 E-value=0.0018 Score=67.07 Aligned_cols=104 Identities=18% Similarity=0.089 Sum_probs=78.1
Q ss_pred ceEEeeccccccceeecCCCceeEEEEeeCCCceEEeeCCchHHHHHHHHHhhccchhhhhhcCCCChhhhhcccccccC
Q 043353 211 PMLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVYSRDILSAAGEDGAFEVIAEKTTIFP 290 (499)
Q Consensus 211 p~lyiGm~~S~f~WH~ED~~l~SiNy~H~GapK~WY~VP~~~~~kfe~l~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 290 (499)
--.|+|-.+|+++.|.+=-.-+|-.-+..| -|.|..+||....++....-+. -.-+.
T Consensus 200 rFvy~Gp~gSwtp~HaDVf~s~swS~nicG-~KrWl~~pP~qe~~l~dr~gnl----------------------p~~~~ 256 (427)
T KOG2131|consen 200 RFVYAGPAGSWTPFHADVFHSPSWSVNICG-RKRWLLYPPEQEQTLADRYGNL----------------------PLPSW 256 (427)
T ss_pred eEEEeccCCCCCccchhhhcCCcceeeeec-ceeEEEeChHHhhhhhhhccCc----------------------CCccc
Confidence 347999999999999777666676677778 6999999999866543322111 01122
Q ss_pred hhhHhhCCCceEEeeeCCCcEEEEcCCceeeeeecccceeeeecccc
Q 043353 291 PKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNGFNCGEAVNFAI 337 (499)
Q Consensus 291 P~~L~~~gIpv~r~~Q~pGefVvtfP~aYH~gfn~Gfn~aEavNfa~ 337 (499)
-..|.....|.+.+.|+|||.|++--|=+|.+.|.|-.++..=|..-
T Consensus 257 ~~~ld~~~~~~lei~Qepge~VFvPsGW~hQV~NL~dTISINHNW~N 303 (427)
T KOG2131|consen 257 ITKLDLFRGPLLEIFQEPGETVFVPSGWHHQVLNLGDTISINHNWCN 303 (427)
T ss_pred cccccccccchhhhhccCCceeeccCccccccccccceeeecccccc
Confidence 23456677788999999999999999999999999999887755443
No 11
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=93.77 E-value=0.046 Score=55.92 Aligned_cols=131 Identities=22% Similarity=0.275 Sum_probs=88.6
Q ss_pred CCcccccccCCCCCCccceEEeeccccccceeecCCCceeEEEEeeCCCceEEeeCCchHHHHHHHHHhhccchhhhhhc
Q 043353 194 PQSIFRFLEHIIPGITDPMLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVYSRDILSAA 273 (499)
Q Consensus 194 ~~slL~~~~~~i~Gv~~p~lyiGm~~S~f~WH~ED~~l~SiNy~H~GapK~WY~VP~~~~~kfe~l~~~~~~~~~l~~~~ 273 (499)
...|+++++.+ .-=---|+-+|-..|.+.||++...+-.-|-+..| -|.|.-+|+.--..+-+..... .
T Consensus 165 ~dDlF~y~g~e-~RPpyRWfvmGParSGtsiHIDPlgTSAWNtll~G-hKrW~LfPp~~p~~lvkv~~~e---------~ 233 (407)
T KOG2130|consen 165 RDDLFQYLGEE-RRPPYRWFVMGPARSGTSIHIDPLGTSAWNTLLQG-HKRWVLFPPGTPPELVKVTVDE---------G 233 (407)
T ss_pred hHHHHHhcCcc-cCCCceeEEecCCCCCceeEECCcchHHHHHHhhc-cceeEEcCCCCCCCceeecccc---------c
Confidence 45666776643 11113589999999999999999999999999998 6999999988643322221111 0
Q ss_pred CCCChhhhhcccccccC--------hhhHhhCCCceEEeeeCCCcEEEEcCCceeeeeecccceeeeeccccccccc
Q 043353 274 GEDGAFEVIAEKTTIFP--------PKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNGFNCGEAVNFAIRDWFP 342 (499)
Q Consensus 274 ~~~~~~~~l~~~~~~~~--------P~~L~~~gIpv~r~~Q~pGefVvtfP~aYH~gfn~Gfn~aEavNfa~~~Wl~ 342 (499)
+ .|++-. .++++ |. +-.+ -.-.-++|.|||-|++--|=.|.++|.-.++|..-|||...-++
T Consensus 234 g--~~~de~---itwf~~~y~rt~~Ps-wp~E-~kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~ 303 (407)
T KOG2130|consen 234 G--KQPDEI---ITWFSTIYPRTQLPS-WPDE-YKPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFP 303 (407)
T ss_pred C--CCCcce---echhhhccccccCCC-Cccc-cCCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCc
Confidence 0 111100 11111 11 1111 12345899999999999999999999999999999999876554
No 12
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=92.73 E-value=0.19 Score=57.28 Aligned_cols=116 Identities=11% Similarity=0.022 Sum_probs=79.1
Q ss_pred ceEEeeCCchHHHHHHHHHhhccchhhhhhcCCCChhhhhcccccccChh----hHhhCCCceEEeeeCCCcEEEEcCCc
Q 043353 243 KTWYGVPGHHALQFEKVARNQVYSRDILSAAGEDGAFEVIAEKTTIFPPK----ILLDNGVSVYKAVQKPGEFVITFPRV 318 (499)
Q Consensus 243 K~WY~VP~~~~~kfe~l~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~P~----~L~~~gIpv~r~~Q~pGefVvtfP~a 318 (499)
-.|=+....+++|++++++++-.+ + .+.-....+-++-+.+.+.-. ...+.||.-..++|..||.|++-.||
T Consensus 740 ALWhIF~~~Dv~KireyL~k~~~E---~-~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGVe~WtfvQ~LGdAVfIPAGa 815 (889)
T KOG1356|consen 740 ALWHIFRAQDVPKIREYLRKVCKE---Q-GHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGVEPWTFVQFLGDAVFIPAGA 815 (889)
T ss_pred chhhhhhhcchHHHHHHHHHhhHH---h-cCCCCcccCCCcccceeccHHHHHHHHHHhCCCccchhhcccceEEecCCC
Confidence 479999999999999999887311 0 000001112233344444432 33467999999999999999999999
Q ss_pred eeeeeecccceeeeecccccccccchHHHHHHHHhcCCCCCcCHH
Q 043353 319 YHAGFSNGFNCGEAVNFAIRDWFPFGEEAGKRYARLHKMVILPYQ 363 (499)
Q Consensus 319 YH~gfn~Gfn~aEavNfa~~~Wl~~g~~a~~~y~~~~~~~~~s~~ 363 (499)
.|.+.|.--++.-|..|.+|.-+.....-.+.++.+... .+.|+
T Consensus 816 PHQVrNLkSCikVa~DFVSPE~v~ec~rLT~EfR~Lp~~-h~~~e 859 (889)
T KOG1356|consen 816 PHQVRNLKSCIKVAEDFVSPEHVSECFRLTQEFRQLPQN-HKNHE 859 (889)
T ss_pred cHHhhhhhhHHHHHHhhCChhhHHHHHHHHHHHhhCCCc-ccchH
Confidence 999999999999999999998765433333333333211 44444
No 13
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=82.54 E-value=5 Score=41.58 Aligned_cols=105 Identities=17% Similarity=0.193 Sum_probs=66.3
Q ss_pred CccceEEeeccc-cccceeecCCCceeEEEEeeCCCceEEeeCCchHHHHHHHHHhhccchhhhhhcCCCChhhhhcccc
Q 043353 208 ITDPMLYIGMLF-SMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVYSRDILSAAGEDGAFEVIAEKT 286 (499)
Q Consensus 208 v~~p~lyiGm~~-S~f~WH~ED~~l~SiNy~H~GapK~WY~VP~~~~~kfe~l~~~~~~~~~l~~~~~~~~~~~~l~~~~ 286 (499)
-..-.+|++-.+ ..|++|..+++..- +-.-+.|.|..-++.... . .+..+.
T Consensus 113 ~~~~n~Y~tp~g~~g~~~H~D~~dvfv---lQ~~G~K~W~l~~~~~~~--------------~----------~~~~~~- 164 (319)
T PF08007_consen 113 PVGANAYLTPPGSQGFGPHYDDHDVFV---LQLEGRKRWRLYPPPDEP--------------A----------PLYSDQ- 164 (319)
T ss_dssp -EEEEEEEETSSBEESECEE-SSEEEE---EEEES-EEEEEE-SCCCT--------------T----------TSSCE--
T ss_pred ccceEEEecCCCCCCccCEECCcccEE---EECCceeEEEECCCCccc--------------c----------cccCCC-
Confidence 345678999888 58999999986554 345568999988721100 0 000000
Q ss_pred cccChhhHhhCCCceEEeeeCCCcEEEEcCCceeeeeecccceeeeecccccccccch
Q 043353 287 TIFPPKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNGFNCGEAVNFAIRDWFPFG 344 (499)
Q Consensus 287 ~~~~P~~L~~~gIpv~r~~Q~pGefVvtfP~aYH~gfn~Gfn~aEavNfa~~~Wl~~g 344 (499)
+-...+..-|+..++=+|||.++.-+|..|.+.+.|.++.-+++|-++.|..+-
T Consensus 165 ----~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~~~S~hltv~~~~~t~~dl~ 218 (319)
T PF08007_consen 165 ----PFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQAVTTDPSLHLTVGFRAPTWADLL 218 (319)
T ss_dssp -----TTTCG--STSEEEEE-TT-EEEE-TT-EEEEEESS-EEEEEEEECCEBHHHHH
T ss_pred ----CccccccCceeEEEEECCCCEEEECCCccCCCCCCCCceEEEEeeeCCchhhHH
Confidence 001112235788899999999999999999999999999999999999998753
No 14
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=53.77 E-value=6.9 Score=27.98 Aligned_cols=35 Identities=23% Similarity=0.669 Sum_probs=27.1
Q ss_pred ccccccceeeEEEeeccCCceeecccccccccCCCC
Q 043353 419 CDLCKRDCYLAFTECKSCQRYTCLFHEFKSRHCSCG 454 (499)
Q Consensus 419 C~~C~~~~fls~v~c~c~~~~~CL~H~~~~~~c~c~ 454 (499)
|..|+...+|..+.|+-..+.+|+.|-. ...-+|+
T Consensus 1 C~~C~~~~~l~~f~C~~C~~~FC~~HR~-~e~H~C~ 35 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCGNLFCGEHRL-PEDHDCP 35 (39)
T ss_pred CcccCCcccccCeECCccCCccccccCC-ccccCCc
Confidence 7889999999888899556799999954 3344555
No 15
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=42.98 E-value=23 Score=33.67 Aligned_cols=43 Identities=26% Similarity=0.508 Sum_probs=32.9
Q ss_pred hCCCceEEeeeCCCcEEEEcCCceeeeeecccceeeeecc-------cccccccc
Q 043353 296 DNGVSVYKAVQKPGEFVITFPRVYHAGFSNGFNCGEAVNF-------AIRDWFPF 343 (499)
Q Consensus 296 ~~gIpv~r~~Q~pGefVvtfP~aYH~gfn~Gfn~aEavNf-------a~~~Wl~~ 343 (499)
...=+++.+.-.+|++|.+-||.||| |.+.|+-|| +++.|.+.
T Consensus 112 ~~d~~~~~i~c~~gDLI~vP~gi~Hw-----Ftlt~~~~f~AvRlF~~~~gWVa~ 161 (181)
T COG1791 112 SPDGKVYQIRCEKGDLISVPPGIYHW-----FTLTESPNFKAVRLFTEPEGWVAI 161 (181)
T ss_pred CCCCcEEEEEEccCCEEecCCCceEE-----EEccCCCcEEEEEEeeCCCCceee
Confidence 33448899999999999999999998 455566555 46778764
No 16
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=30.13 E-value=32 Score=40.01 Aligned_cols=63 Identities=16% Similarity=0.059 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcccccCccccccccccccceeeEEEeec-cCCceeeccccc
Q 043353 383 KATVLHQIRSLNNALFCLNNLKMPFDYLQNSQGSFVCDLCKRDCYLAFTECK-SCQRYTCLFHEF 446 (499)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~C~~C~~~~fls~v~c~-c~~~~~CL~H~~ 446 (499)
...|.+++++++.++...+...+..--.........|..|.+.+|+..-+|. |.-+ +|+.|..
T Consensus 196 gd~~c~~~~se~eAl~~~~~~~~~a~k~a~~g~~~mC~~C~~tlfn~hw~C~~C~~~-~Cl~C~r 259 (889)
T KOG1356|consen 196 GDQFCQLVRSEKEALSMQRPDQKVAWKRAVKGIREMCDRCETTLFNIHWRCPRCGFG-VCLDCYR 259 (889)
T ss_pred cchhhhhhhccchhhcccCcccccchhhcccCcchhhhhhcccccceeEEccccCCe-eeecchh
Confidence 3456677777766655333333222111112345779999999999999998 5545 8887754
No 17
>COG2461 Uncharacterized conserved protein [Function unknown]
Probab=29.48 E-value=33 Score=36.71 Aligned_cols=44 Identities=23% Similarity=0.319 Sum_probs=34.0
Q ss_pred CCCCeeeCChhhhcCHHHHHHhhccccccCCeeEEcCCCCccccch
Q 043353 33 SDCPAYYPTLQEFDDPFIYLQKIAPEASQFGICKIISPVKASVSAA 78 (499)
Q Consensus 33 ~~~Pvf~PT~eEF~dp~~YI~~i~~~a~~~GI~KIVPP~~w~~p~~ 78 (499)
.+.-+|+||.-+--++..| ..|+.+-..+|-+||.|| .|.|...
T Consensus 198 kEe~Ilypt~~d~~te~ew-~~i~~~~~eigy~~i~p~-~w~p~~~ 241 (409)
T COG2461 198 KEENILYPTLLDLLTEGEW-EAIKEQSKEIGYAKIKPP-KWKPKKE 241 (409)
T ss_pred hhhhhHHhHHHHhcCHHHH-HHHHhcCcccceEEecCc-cccCccc
Confidence 3456789998887776664 457777789999999999 8987654
No 18
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=22.84 E-value=90 Score=27.44 Aligned_cols=30 Identities=23% Similarity=0.055 Sum_probs=23.9
Q ss_pred CCCcEEEEcCCceeeeeecccc--eeeeeccc
Q 043353 307 KPGEFVITFPRVYHAGFSNGFN--CGEAVNFA 336 (499)
Q Consensus 307 ~pGefVvtfP~aYH~gfn~Gfn--~aEavNfa 336 (499)
++||+|+.-|++-|+..+.+.. .-.++...
T Consensus 87 ~~Gd~i~ip~g~~H~~~a~~~~~~~~l~v~~~ 118 (131)
T COG1917 87 KAGDVIIIPPGVVHGLKAVEDEPMVLLLVFPL 118 (131)
T ss_pred cCCCEEEECCCCeeeeccCCCCceeEEEEeee
Confidence 6799999999999999998887 44444433
No 19
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=21.62 E-value=1e+02 Score=25.28 Aligned_cols=37 Identities=22% Similarity=0.488 Sum_probs=26.1
Q ss_pred ecCCCceeEEEEeeC-CCceEEeeCCchHHHHHHHHHh
Q 043353 226 VEDHYLHSINYHHSG-APKTWYGVPGHHALQFEKVARN 262 (499)
Q Consensus 226 ~ED~~l~SiNy~H~G-apK~WY~VP~~~~~kfe~l~~~ 262 (499)
.|+..+-++..-..| .|++||.+-+.-.+.|++.+..
T Consensus 38 Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr~~~~~~~~~ 75 (80)
T PF13601_consen 38 LEEAGYVEVEKEFEGRRPRTWYSLTDKGREAFERYVAA 75 (80)
T ss_dssp HHHTTSEEEEEE-SSS--EEEEEE-HHHHHHHHHHHHH
T ss_pred HHHCCCEEEEEeccCCCCeEEEEECHHHHHHHHHHHHH
Confidence 466666666666655 4999999999999999988764
No 20
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=21.54 E-value=73 Score=29.81 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=17.2
Q ss_pred ceEEeeeCCCcEEEEcCCceeee
Q 043353 300 SVYKAVQKPGEFVITFPRVYHAG 322 (499)
Q Consensus 300 pv~r~~Q~pGefVvtfP~aYH~g 322 (499)
...|+.-++|++|++-+|.||+-
T Consensus 113 ~wiri~~e~GDli~vP~g~~HrF 135 (157)
T PF03079_consen 113 VWIRILCEKGDLIVVPAGTYHRF 135 (157)
T ss_dssp EEEEEEEETTCEEEE-TT--EEE
T ss_pred EEEEEEEcCCCEEecCCCCceeE
Confidence 46678889999999999999984
Done!