Query 043353
Match_columns 499
No_of_seqs 247 out of 713
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 06:46:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043353.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043353hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vrba1 b.82.2.11 (A:8-326) Pu 97.3 0.00023 1.7E-08 68.0 8.7 123 210-348 123-245 (319)
2 d1h2ka_ b.82.2.6 (A:) Hypoxia- 97.1 0.00048 3.5E-08 67.2 7.9 109 209-335 169-281 (335)
3 d2co8a1 g.39.1.3 (A:44-76) Ned 59.9 1.5 0.00011 27.3 1.1 28 418-445 1-29 (33)
4 d1zrra1 b.82.1.6 (A:1-179) Aci 41.1 7.7 0.00056 33.6 3.1 44 300-343 120-165 (179)
5 d1wfpa_ g.80.1.1 (A:) Zinc fin 32.3 13 0.00097 27.4 2.7 38 415-454 24-61 (74)
6 d1wffa_ g.80.1.1 (A:) ANUBL1 ( 30.7 17 0.0012 27.5 3.2 41 415-457 24-65 (85)
7 d1vj2a_ b.82.1.10 (A:) Hypothe 30.5 19 0.0014 27.7 3.7 36 303-338 75-110 (114)
8 d1wfha_ g.80.1.1 (A:) Zinc fin 29.8 13 0.00097 26.7 2.3 38 415-454 14-51 (64)
9 d1o4ta_ b.82.1.9 (A:) Hypothet 29.4 13 0.00092 28.9 2.4 22 307-328 83-104 (115)
10 d1v70a_ b.82.1.9 (A:) Hypothet 26.7 22 0.0016 26.5 3.3 31 305-335 70-100 (105)
11 d1x82a_ b.82.1.7 (A:) Glucose- 25.7 23 0.0017 30.3 3.7 37 303-339 120-156 (190)
12 d1m6ex_ c.66.1.35 (X:) Salicyl 22.9 11 0.00083 35.9 1.0 16 35-50 252-267 (359)
13 d1wfla_ g.80.1.1 (A:) Zinc fin 22.7 15 0.0011 27.2 1.4 29 416-445 25-53 (74)
14 d2b8ma1 b.82.1.18 (A:1-108) Hy 20.4 37 0.0027 25.9 3.5 31 307-337 70-100 (108)
No 1
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}
Probab=97.33 E-value=0.00023 Score=68.04 Aligned_cols=123 Identities=12% Similarity=0.096 Sum_probs=81.4
Q ss_pred cceEEeeccccccceeecCCCceeEEEEeeCCCceEEeeCCchHHHHHHHHHhhccchhhhhhcCCCChhhhhccccccc
Q 043353 210 DPMLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVYSRDILSAAGEDGAFEVIAEKTTIF 289 (499)
Q Consensus 210 ~p~lyiGm~~S~f~WH~ED~~l~SiNy~H~GapK~WY~VP~~~~~kfe~l~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 289 (499)
...+++|..++.+.+|...++ .++.+-.| .|.|+..|+.+...+ .+..+. ... ...+.-+.....-
T Consensus 123 ~~~~~~~~~g~~~~~H~D~~d--~f~~Qv~G-~K~W~L~~p~~~~~~-------~~~~~~--~~~-~~~~~~~~~~~~~- 188 (319)
T d1vrba1 123 KAIVYAAKNGGGFKAHFDAYT--NLIFQIQG-EKTWKLAKNENVSNP-------MQHYDL--SEA-PYYPDDLQSYWKG- 188 (319)
T ss_dssp EEEEEEECSSCCCCSEECSSE--EEEEEEES-CEEEEEECCSSCSSC-------SSCEEC--C-----CCHHHHHHCCS-
T ss_pred eeEEEecCCCCCCccccCCCc--eeEEeecc-eEEEEEeCCcccccc-------ccCccc--ccC-ccccccccccchh-
Confidence 356888999999999998764 34555566 799999999764321 000000 000 0000000000000
Q ss_pred ChhhHhhCCCceEEeeeCCCcEEEEcCCceeeeeecccceeeeecccccccccchHHHH
Q 043353 290 PPKILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNGFNCGEAVNFAIRDWFPFGEEAG 348 (499)
Q Consensus 290 ~P~~L~~~gIpv~r~~Q~pGefVvtfP~aYH~gfn~Gfn~aEavNfa~~~Wl~~g~~a~ 348 (499)
......+.+.+.++++|||.+++-+|-+|.+.|.|-+++-++||..++|.++-..++
T Consensus 189 --~~~~~~~~~~~~~~L~pGDvLYiP~gw~H~v~s~~~sis~sv~f~~~~~~d~~~~~~ 245 (319)
T d1vrba1 189 --DPPKEDLPDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFGQPAWLDLMLAAL 245 (319)
T ss_dssp --CCCCTTCCSSEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEECCCBHHHHHHHHH
T ss_pred --hchhhhcCccEEEEECCCCEEEeCCCceEEeEecCCeEEEEEEecCCCHHHHHHHHH
Confidence 011234568899999999999999999999999999999999999999998754443
No 2
>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.06 E-value=0.00048 Score=67.23 Aligned_cols=109 Identities=18% Similarity=0.105 Sum_probs=73.0
Q ss_pred ccceEEeeccccccceeecCCCceeEEEEeeCCCceEEeeCCchHHHHHHHHHhhccchhhhhhcCCCChhhhhcccccc
Q 043353 209 TDPMLYIGMLFSMFAWHVEDHYLHSINYHHSGAPKTWYGVPGHHALQFEKVARNQVYSRDILSAAGEDGAFEVIAEKTTI 288 (499)
Q Consensus 209 ~~p~lyiGm~~S~f~WH~ED~~l~SiNy~H~GapK~WY~VP~~~~~kfe~l~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 288 (499)
...+|+||..+|.+.+|.+.. .+++.+-.| .|.|+.+|+++...+.. . ..... ... ....-.
T Consensus 169 ~~~~lwiG~~gs~t~~H~D~~--~~~~~q~~G-~K~~~l~~p~~~~~~~~-------~-~~~~~------~~~-~s~~d~ 230 (335)
T d1h2ka_ 169 TSNLLLIGMEGNVTPAHYDEQ--QNFFAQIKG-YKRCILFPPDQFECLYP-------Y-PVHHP------CDR-QSQVDF 230 (335)
T ss_dssp EECEEEEECTTCEEEEECCSE--EEEEEEEES-CEEEEEECGGGHHHHCB-------C-CTTST------TTT-BBCCCT
T ss_pred cceEEEEcCCCCCCccccccc--cceEEEecc-ceEEEEecccccccccc-------c-cccCC------CCc-ceeccc
Confidence 456799999999999998764 466666666 79999999998754311 0 00000 000 000001
Q ss_pred cChh---hHhhCCCceEEeeeCCCcEEEEcCCceeeeeecc-cceeeeecc
Q 043353 289 FPPK---ILLDNGVSVYKAVQKPGEFVITFPRVYHAGFSNG-FNCGEAVNF 335 (499)
Q Consensus 289 ~~P~---~L~~~gIpv~r~~Q~pGefVvtfP~aYH~gfn~G-fn~aEavNf 335 (499)
..|+ .-.-.+++.+.++++|||.+++-|+-+|.+.|.+ -+++.||||
T Consensus 231 ~~~d~~~~p~~~~~~~~~~~l~pGd~L~iP~~w~H~V~~~~~~~~sisvn~ 281 (335)
T d1h2ka_ 231 DNPDYERFPNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNF 281 (335)
T ss_dssp TSCCTTTCGGGGGCCEEEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEE
T ss_pred cCcchhhccchhcCCceEEEECCCCEEeeCCCCeEEEEEcCCCCeEEEEEe
Confidence 1111 1112356889999999999999999999999974 478888998
No 3
>d2co8a1 g.39.1.3 (A:44-76) Nedd9 interacting protein with calponin homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.92 E-value=1.5 Score=27.28 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=22.5
Q ss_pred cccccccceeeEEEeeccC-Cceeecccc
Q 043353 418 VCDLCKRDCYLAFTECKSC-QRYTCLFHE 445 (499)
Q Consensus 418 ~C~~C~~~~fls~v~c~c~-~~~~CL~H~ 445 (499)
+|..|..++..-.+.-.-. ...+||.|-
T Consensus 1 rC~~CeatL~pG~Y~qhp~dghfyc~~hl 29 (33)
T d2co8a1 1 RCHTCEATLWPGGYEQHPGDGHFYCLQHL 29 (33)
T ss_dssp BCSSSCCBCCTTSEECCTTTCCCEETTTC
T ss_pred CceeeeeEEccCcccCCCCCceEeeeecc
Confidence 5999999999977765544 469999995
No 4
>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}
Probab=41.13 E-value=7.7 Score=33.61 Aligned_cols=44 Identities=7% Similarity=0.008 Sum_probs=30.9
Q ss_pred ceEEeeeCCCcEEEEcCCceeeeeecccc--eeeeecccccccccc
Q 043353 300 SVYKAVQKPGEFVITFPRVYHAGFSNGFN--CGEAVNFAIRDWFPF 343 (499)
Q Consensus 300 pv~r~~Q~pGefVvtfP~aYH~gfn~Gfn--~aEavNfa~~~Wl~~ 343 (499)
.++++.-++||+|++-||++||--...-+ ++...--.++.|.+.
T Consensus 120 ~~~~v~~~~GDli~vPag~~H~F~~~~~~~~~aiRlF~~~~gW~~~ 165 (179)
T d1zrra1 120 EVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDNPEGWIAQ 165 (179)
T ss_dssp CEEEEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEECCGGGEESC
T ss_pred eEEEEEEcCCCEEEeCCCCeEccccCCCCCEEEEEEecCCCCCeee
Confidence 68899999999999999999994322222 233333446778764
No 5
>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=32.28 E-value=13 Score=27.44 Aligned_cols=38 Identities=16% Similarity=0.381 Sum_probs=29.8
Q ss_pred ccccccccccceeeEEEeeccCCceeecccccccccCCCC
Q 043353 415 GSFVCDLCKRDCYLAFTECKSCQRYTCLFHEFKSRHCSCG 454 (499)
Q Consensus 415 ~~~~C~~C~~~~fls~v~c~c~~~~~CL~H~~~~~~c~c~ 454 (499)
....|..|+.-+-|..+.|.|. .++|..|-. .....|.
T Consensus 24 kk~RC~~C~KKl~l~~~~CrCg-~~FC~~HR~-pe~H~C~ 61 (74)
T d1wfpa_ 24 TATRCLSCNKKVGVTGFKCRCG-STFCGTHRY-PESHECQ 61 (74)
T ss_dssp CCCBCSSSCCBCTTTCEECTTS-CEECTTTCS-TTTSCCC
T ss_pred CCCcChhcCCccCCCceecCCC-ChhhhccCC-ccCcCCC
Confidence 4678999999998888899986 689999953 3445665
No 6
>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.73 E-value=17 Score=27.54 Aligned_cols=41 Identities=27% Similarity=0.503 Sum_probs=30.3
Q ss_pred ccccccccccceeeE-EEeeccCCceeecccccccccCCCCCCe
Q 043353 415 GSFVCDLCKRDCYLA-FTECKSCQRYTCLFHEFKSRHCSCGYNR 457 (499)
Q Consensus 415 ~~~~C~~C~~~~fls-~v~c~c~~~~~CL~H~~~~~~c~c~~~~ 457 (499)
....|..|+.-+-|. .+.|.|. ..+|..|-. .....|.-++
T Consensus 24 ~~~RC~~C~KKl~l~~~~~CrCg-~~FC~~HR~-pe~H~CtfDy 65 (85)
T d1wffa_ 24 IMKHCFLCGKKTGLATSFECRCG-NNFCASHRY-AEAHGCNYDY 65 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECTTC-CEECTTTCS-TGGGTCCSCC
T ss_pred cCCcChhcCCeecCCcCeecCCC-CEehhhcCC-CcCcCCCcch
Confidence 345799999999985 6899986 599999954 3445676433
No 7
>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}
Probab=30.51 E-value=19 Score=27.73 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=28.7
Q ss_pred EeeeCCCcEEEEcCCceeeeeecccceeeeeccccc
Q 043353 303 KAVQKPGEFVITFPRVYHAGFSNGFNCGEAVNFAIR 338 (499)
Q Consensus 303 r~~Q~pGefVvtfP~aYH~gfn~Gfn~aEavNfa~~ 338 (499)
...-.||+++++-|+..|+..|.|-...+-+-+.|+
T Consensus 75 ~~~l~~Gd~~~ip~~~~H~~~n~~~~~~~~l~iip~ 110 (114)
T d1vj2a_ 75 EETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCLIPK 110 (114)
T ss_dssp EEEEETTEEEEECTTCCEEEECCSSSCEEEEEEEEG
T ss_pred eeEEecCeEEEEcCCCeEEEEeCCCCCEEEEEEECC
Confidence 355689999999999999999999776665555543
No 8
>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=29.79 E-value=13 Score=26.68 Aligned_cols=38 Identities=18% Similarity=0.419 Sum_probs=29.4
Q ss_pred ccccccccccceeeEEEeeccCCceeecccccccccCCCC
Q 043353 415 GSFVCDLCKRDCYLAFTECKSCQRYTCLFHEFKSRHCSCG 454 (499)
Q Consensus 415 ~~~~C~~C~~~~fls~v~c~c~~~~~CL~H~~~~~~c~c~ 454 (499)
....|..|+.-+-|..+.|.|.. ++|..|-. .....|.
T Consensus 14 k~~RC~~C~KKl~l~~~~CrCg~-~FC~~HR~-pe~H~Ct 51 (64)
T d1wfha_ 14 RPNRCTVCRKRVGLTGFMCRCGT-TFCGSHRY-PEVHGCT 51 (64)
T ss_dssp SCCCCTTTCCCCCTTCEECSSSC-EECTTTCS-TTTTTCC
T ss_pred CCCcChhhCCCccceeeeccCCC-EehhhcCC-CcCcCCC
Confidence 34689999999999889999754 99999953 3345665
No 9
>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}
Probab=29.38 E-value=13 Score=28.94 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=20.3
Q ss_pred CCCcEEEEcCCceeeeeecccc
Q 043353 307 KPGEFVITFPRVYHAGFSNGFN 328 (499)
Q Consensus 307 ~pGefVvtfP~aYH~gfn~Gfn 328 (499)
+|||++++-|++.|+..|.|-.
T Consensus 83 ~~Gd~~~ip~g~~H~~~N~g~~ 104 (115)
T d1o4ta_ 83 KAGDVCFTDSGESHSIENTGNT 104 (115)
T ss_dssp ETTEEEEECTTCEEEEECCSSS
T ss_pred eccEEEEECCCCeEEEEECCCC
Confidence 6999999999999999999864
No 10
>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}
Probab=26.73 E-value=22 Score=26.49 Aligned_cols=31 Identities=10% Similarity=-0.021 Sum_probs=24.8
Q ss_pred eeCCCcEEEEcCCceeeeeecccceeeeecc
Q 043353 305 VQKPGEFVITFPRVYHAGFSNGFNCGEAVNF 335 (499)
Q Consensus 305 ~Q~pGefVvtfP~aYH~gfn~Gfn~aEavNf 335 (499)
.=+||+.++.-|++.|...|.|-.-+..+.+
T Consensus 70 ~l~~Gd~~~~p~~~~H~~~n~g~~~~~~l~v 100 (105)
T d1v70a_ 70 LLAPGMAAFAPAGAPHGVRNESASPALLLVV 100 (105)
T ss_dssp EECTTCEEEECTTSCEEEECCSSSCEEEEEE
T ss_pred EecceEEEEeCCCCEEEeEECCCCCEEEEEE
Confidence 3478999999999999999999765555443
No 11
>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=25.71 E-value=23 Score=30.29 Aligned_cols=37 Identities=19% Similarity=0.029 Sum_probs=29.8
Q ss_pred EeeeCCCcEEEEcCCceeeeeecccceeeeecccccc
Q 043353 303 KAVQKPGEFVITFPRVYHAGFSNGFNCGEAVNFAIRD 339 (499)
Q Consensus 303 r~~Q~pGefVvtfP~aYH~gfn~Gfn~aEavNfa~~~ 339 (499)
.+.=.||++|++-|+..|...|.|-.-...+++.+++
T Consensus 120 ~~~v~~Gd~v~iP~g~~H~~~N~Gde~L~~l~v~~~~ 156 (190)
T d1x82a_ 120 WISMEPGTVVYVPPYWAHRTVNIGDEPFIFLAIYPAD 156 (190)
T ss_dssp EEEECTTCEEEECTTCEEEEEECSSSCEEEEEEEETT
T ss_pred EEEecCCcEEEEecceeEEeEECCCCCEEEEEEECCC
Confidence 4456799999999999999999998766666665543
No 12
>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}
Probab=22.92 E-value=11 Score=35.92 Aligned_cols=16 Identities=25% Similarity=0.592 Sum_probs=15.0
Q ss_pred CCeeeCChhhhcCHHH
Q 043353 35 CPAYYPTLQEFDDPFI 50 (499)
Q Consensus 35 ~Pvf~PT~eEF~dp~~ 50 (499)
.|+|+||.|||+.++.
T Consensus 252 ~P~Y~ps~eEv~~~ie 267 (359)
T d1m6ex_ 252 IPQYTPSPTEVEAEIL 267 (359)
T ss_dssp CCCBCCCSHHHHHHHH
T ss_pred CccccCCHHHHHHHhc
Confidence 8999999999999886
No 13
>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.70 E-value=15 Score=27.17 Aligned_cols=29 Identities=21% Similarity=0.506 Sum_probs=24.1
Q ss_pred cccccccccceeeEEEeeccCCceeecccc
Q 043353 416 SFVCDLCKRDCYLAFTECKSCQRYTCLFHE 445 (499)
Q Consensus 416 ~~~C~~C~~~~fls~v~c~c~~~~~CL~H~ 445 (499)
...|..|+.-+=|..+.|.|. ..+|..|-
T Consensus 25 ~~RC~~C~KKl~l~~~~CrCg-~~FC~~HR 53 (74)
T d1wfla_ 25 KNRCFMCRKKVGLTGFDCRCG-NLFCGLHR 53 (74)
T ss_dssp TTBCSSSCCBCGGGCEECTTS-CEECSSSC
T ss_pred CCcChhhCCcccceeeEccCC-CEehhhcC
Confidence 468999998888878899975 47999994
No 14
>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=20.38 E-value=37 Score=25.90 Aligned_cols=31 Identities=16% Similarity=-0.118 Sum_probs=25.0
Q ss_pred CCCcEEEEcCCceeeeeecccceeeeecccc
Q 043353 307 KPGEFVITFPRVYHAGFSNGFNCGEAVNFAI 337 (499)
Q Consensus 307 ~pGefVvtfP~aYH~gfn~Gfn~aEavNfa~ 337 (499)
+||++++.-|++.|+..|.|-.-.+-+-+.+
T Consensus 70 ~~Gd~i~ip~~~~H~~~n~~~e~l~~l~v~~ 100 (108)
T d2b8ma1 70 KEGNIVYVPFNVKMLIQNINSDILEFFVVKA 100 (108)
T ss_dssp ETTCEEEECTTCEEEEECCSSSEEEEEEEEC
T ss_pred ecceEeeccCCceEEEEcCCCCcEEEEEEEC
Confidence 6899999999999999999876655554433
Done!