BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>043355
MSGKASSSSQPSIGLSGSGALSHVYIQYPPLRCSIPESRGLHYDDGTKLLISSTSNQIFS
WKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRS
DSENILGFFWTDCPLCDFVVVKN

High Scoring Gene Products

Symbol, full name Information P value
AT3G12010 protein from Arabidopsis thaliana 1.7e-39
zgc:101800 gene_product from Danio rerio 4.1e-05

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  043355
        (143 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2088624 - symbol:AT3G12010 "AT3G12010" species...   426  1.7e-39   1
ZFIN|ZDB-GENE-041212-46 - symbol:zgc:101800 "zgc:101800" ...   108  4.1e-05   1


>TAIR|locus:2088624 [details] [associations]
            symbol:AT3G12010 "AT3G12010" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR015943 EMBL:CP002686
            Gene3D:2.130.10.10 InterPro:IPR009755 Pfam:PF07035 OMA:CLAIVRT
            IPI:IPI00544812 RefSeq:NP_187808.3 UniGene:At.39656
            ProteinModelPortal:F4J8L1 PRIDE:F4J8L1 EnsemblPlants:AT3G12010.1
            GeneID:820375 KEGG:ath:AT3G12010 Uniprot:F4J8L1
        Length = 682

 Score = 426 (155.0 bits), Expect = 1.7e-39, P = 1.7e-39
 Identities = 78/123 (63%), Positives = 96/123 (78%)

Query:    20 ALSHVYIQYPPLRCSIPESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPE 79
             ALSHVYI +P LRC+IPES GL YDD  +LLI +TS+Q+FSW+T PFNP    + DSI E
Sbjct:    13 ALSHVYIHHPSLRCNIPESNGLFYDDANRLLICTTSSQVFSWETSPFNPDVPPSVDSISE 72

Query:    80 GPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENILGFFWTDCPLCDFV 139
             GPILSIRFSLD K IA+QRS  EIQ + RET +  +H+C++ SE+ILGFFW+D PLCD  
Sbjct:    73 GPILSIRFSLDKKAIAVQRSDCEIQLFNRETKQILNHKCKAGSESILGFFWSDSPLCDLA 132

Query:   140 VVK 142
             +VK
Sbjct:   133 IVK 135


>ZFIN|ZDB-GENE-041212-46 [details] [associations]
            symbol:zgc:101800 "zgc:101800" species:7955 "Danio
            rerio" [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0003674 "molecular_function"
            evidence=ND] ZFIN:ZDB-GENE-041212-46 InterPro:IPR009755
            Pfam:PF07035 GeneTree:ENSGT00390000009127 EMBL:CABZ01056343
            EMBL:CABZ01064416 EMBL:CU694221 IPI:IPI00997871
            Ensembl:ENSDART00000050826 Bgee:E7FAS5 Uniprot:E7FAS5
        Length = 657

 Score = 108 (43.1 bits), Expect = 4.1e-05, P = 4.1e-05
 Identities = 21/57 (36%), Positives = 37/57 (64%)

Query:    79 EGPILSIRFSLDTKLIAIQRSSSEIQF--WIRETSEA-FSHRCRSDSENILGFFWTD 132
             +G +  I+FSL  K++A+QR++  + F  +I +     FSH C++ + +ILGF WT+
Sbjct:    63 KGEVKCIKFSLGNKILAVQRTTKSVDFINFIPDYPHLEFSHECKTKNASILGFCWTN 119


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.134   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      143       129   0.00091  102 3  11 22  0.38    31
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  587 (62 KB)
  Total size of DFA:  145 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.95u 0.14s 13.09t   Elapsed:  00:00:01
  Total cpu time:  12.95u 0.14s 13.09t   Elapsed:  00:00:01
  Start:  Mon May 20 22:41:13 2013   End:  Mon May 20 22:41:14 2013

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