BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043355
(143 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96DM3|MIC1_HUMAN Uncharacterized protein C18orf8 OS=Homo sapiens GN=C18orf8 PE=2
SV=2
Length = 657
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 67 NPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQF--WIRETSE-AFSHRCRSDSE 123
NP++ D +G + I+FSL+ K++A+QR+S + F +I + S+ ++ C++ +
Sbjct: 55 NPISFRMDD---KGEVKCIKFSLENKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNA 111
Query: 124 NILGFFWT 131
NILGF WT
Sbjct: 112 NILGFCWT 119
>sp|Q8VC42|MIC1_MOUSE Uncharacterized protein C18orf8 homolog OS=Mus musculus GN=Mic1
PE=2 SV=1
Length = 657
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 42/68 (61%), Gaps = 6/68 (8%)
Query: 67 NPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQF--WIRETSE-AFSHRCRSDSE 123
NP++ D G + I+FSL+ K++A+QR++ + F +I + S+ ++ C++ +
Sbjct: 55 NPISFRMDD---RGEVKCIKFSLENKILAVQRTAKAVDFCNFIPDNSQLEYTQECKTKNA 111
Query: 124 NILGFFWT 131
NILGF WT
Sbjct: 112 NILGFCWT 119
>sp|Q54LC7|MIC1_DICDI Mic1 domain-containing protein DDB_G0286707 OS=Dictyostelium
discoideum GN=DDB_G0286707 PE=3 SV=1
Length = 978
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 30 PLRCSIPESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSL 89
PLR + ES L YDD ++ TS+ + V + + + PI+ +FS
Sbjct: 9 PLRINENES-FLSYDDRLNRVVFKTSS---GFGVVLLDDPEANRRYYSSDKPIIDAKFSP 64
Query: 90 DTKLIAIQRSSSEIQFWIRETSEAFSHRC--RSDSENILGFFWT 131
D K AIQ S +I+ E + C +S ILG++WT
Sbjct: 65 DLKYSAIQFSDYDIEILHLENGTRYIQTCKYKSSKATILGYYWT 108
>sp|P40714|CSCA_ECOLX Sucrose-6-phosphate hydrolase OS=Escherichia coli GN=cscA PE=3 SV=1
Length = 477
Score = 36.6 bits (83), Expect = 0.054, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 31 LRCSIPESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLD 90
L+ S E GL G +L I + S ++ W+ P L S +P+G +L++R +D
Sbjct: 370 LKNSDAEHYGLQLGAGMRLYIDNQSERLVLWRYYPHENLDGYRSIPLPQGDMLALRIFID 429
Query: 91 TKLIAI 96
T + +
Sbjct: 430 TSSVEV 435
>sp|Q54D08|LST8_DICDI Protein LST8 homolog OS=Dictyostelium discoideum GN=lst8 PE=1 SV=1
Length = 304
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 45 DGTKLLISSTSNQIFSWK-----TVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRS 99
DG ++ S+T + F W+ T F PL + + PIL FS DTKL+A +
Sbjct: 171 DGGLVVASNTKGKCFVWRLGEDDTSRFEPLQKIEAHN---APILKTLFSPDTKLLATCSA 227
Query: 100 SSEIQFW 106
++ W
Sbjct: 228 DHTVKIW 234
>sp|P04468|CASK_RAT Kappa-casein OS=Rattus norvegicus GN=Csn3 PE=2 SV=1
Length = 178
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 24 VYIQYPPLRCSIPESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPIL 83
+Y Y R S+P S ++ G KLL+ + QI W+ +P P IP L
Sbjct: 60 IYYHY---RTSVPVSPYAYFPVGLKLLLLRSPAQILKWQPMPNFPQPVGVPHPIPNPSFL 116
Query: 84 SI 85
+I
Sbjct: 117 AI 118
>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1
Length = 1683
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 45 DGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQ 104
DG L +S+ + I W T L T T S ++++RFS D + IA ++
Sbjct: 1166 DGKNLASASSDHSIKLWDTTSGQLLMTLTGHS---AGVITVRFSPDGQTIAAGSEDKTVK 1222
Query: 105 FWIRE 109
W R+
Sbjct: 1223 LWHRQ 1227
>sp|B7VM97|PLSB_VIBSL Glycerol-3-phosphate acyltransferase OS=Vibrio splendidus (strain
LGP32) GN=plsB PE=3 SV=1
Length = 807
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 90 DTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENILGFFW 130
++K I+I+++S E Q + E + FS+ E ILG+ W
Sbjct: 235 ESKNISIEKASKEAQDIMDEIAANFSYSLIKRGEKILGWLW 275
>sp|Q9D994|WDR38_MOUSE WD repeat-containing protein 38 OS=Mus musculus GN=Wdr38 PE=2 SV=1
Length = 303
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 45 DGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQ 104
DG LL +S ++ W T L GP+ S FS D +LIA S I+
Sbjct: 37 DGRTLLTASDDGCVYVWGTKSGRLLWRLAGH---RGPVKSCCFSPDGRLIASSSSDHSIR 93
Query: 105 FW 106
W
Sbjct: 94 LW 95
>sp|P27514|PHO91_YEAST Low-affinity phosphate transporter PHO91 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PHO91 PE=1
SV=2
Length = 894
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%)
Query: 51 ISSTSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRET 110
+S+T+N S + + ++ S S+ + P R SL +LI+I SE++ +I
Sbjct: 172 VSNTTNNGNSMQNLASASVSLSNSNPVYLSPFTQHRLSLKKRLISIYTQLSELKDFIELN 231
Query: 111 SEAFSHRCR 119
FS C+
Sbjct: 232 QTGFSKICK 240
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,877,347
Number of Sequences: 539616
Number of extensions: 1803424
Number of successful extensions: 4044
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4032
Number of HSP's gapped (non-prelim): 17
length of query: 143
length of database: 191,569,459
effective HSP length: 106
effective length of query: 37
effective length of database: 134,370,163
effective search space: 4971696031
effective search space used: 4971696031
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)