Query 043355
Match_columns 143
No_of_seqs 56 out of 58
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 04:13:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2377 Uncharacterized conser 100.0 3.3E-45 7.1E-50 327.3 11.8 124 17-143 4-131 (657)
2 cd00200 WD40 WD40 domain, foun 97.1 0.054 1.2E-06 39.4 13.6 102 35-142 9-111 (289)
3 cd00200 WD40 WD40 domain, foun 96.4 0.22 4.9E-06 36.1 13.1 99 37-141 179-278 (289)
4 PF08662 eIF2A: Eukaryotic tra 95.1 0.63 1.4E-05 36.6 11.5 95 38-140 62-159 (194)
5 KOG1446 Histone H3 (Lys4) meth 94.9 0.46 1E-05 41.6 11.1 96 41-142 146-250 (311)
6 KOG0265 U5 snRNP-specific prot 94.3 0.23 5.1E-06 43.7 7.8 69 70-140 37-106 (338)
7 KOG0318 WD40 repeat stress pro 94.2 0.36 7.8E-06 45.3 9.2 57 78-134 486-542 (603)
8 KOG0315 G-protein beta subunit 93.5 0.7 1.5E-05 40.3 9.3 82 38-119 170-257 (311)
9 KOG0305 Anaphase promoting com 93.2 0.66 1.4E-05 42.7 9.1 83 25-111 160-249 (484)
10 KOG0271 Notchless-like WD40 re 92.9 0.34 7.3E-06 44.2 6.7 54 78-132 114-167 (480)
11 KOG0291 WD40-repeat-containing 92.4 0.62 1.3E-05 45.4 8.0 62 78-142 95-163 (893)
12 PF04841 Vps16_N: Vps16, N-ter 92.0 0.97 2.1E-05 39.7 8.3 55 85-143 34-99 (410)
13 PTZ00421 coronin; Provisional 91.7 8.5 0.00018 35.0 14.1 105 29-134 69-180 (493)
14 COG4946 Uncharacterized protei 90.6 4.8 0.0001 38.0 11.5 89 45-139 370-458 (668)
15 PF08662 eIF2A: Eukaryotic tra 90.2 2.5 5.3E-05 33.2 8.2 67 69-141 48-117 (194)
16 KOG1274 WD40 repeat protein [G 89.8 1.5 3.1E-05 43.4 7.9 65 46-111 106-170 (933)
17 PF15492 Nbas_N: Neuroblastoma 89.7 7.4 0.00016 33.8 11.3 89 46-134 7-103 (282)
18 PF00400 WD40: WD domain, G-be 89.4 2 4.3E-05 24.2 5.5 33 75-107 7-39 (39)
19 KOG2048 WD40 repeat protein [G 89.0 1.5 3.3E-05 42.0 7.2 57 78-134 24-81 (691)
20 PF10313 DUF2415: Uncharacteri 88.5 0.57 1.2E-05 30.0 2.9 29 80-108 1-32 (43)
21 PTZ00420 coronin; Provisional 88.3 19 0.00041 33.7 13.7 109 28-141 19-142 (568)
22 KOG0318 WD40 repeat stress pro 88.3 24 0.00052 33.6 15.8 117 15-134 164-291 (603)
23 PTZ00421 coronin; Provisional 88.2 18 0.00039 32.9 13.3 56 78-133 74-136 (493)
24 KOG0283 WD40 repeat-containing 88.2 0.68 1.5E-05 44.5 4.4 31 78-108 266-296 (712)
25 PRK05137 tolB translocation pr 88.0 11 0.00025 32.5 11.5 83 47-133 166-256 (435)
26 KOG0271 Notchless-like WD40 re 87.9 3.1 6.7E-05 38.2 8.2 91 38-132 118-210 (480)
27 KOG0278 Serine/threonine kinas 87.6 0.85 1.8E-05 39.9 4.3 42 78-119 266-308 (334)
28 KOG1407 WD40 repeat protein [F 87.2 1.8 3.9E-05 37.9 6.0 39 81-119 233-272 (313)
29 PRK03629 tolB translocation pr 86.7 9.1 0.0002 33.4 10.3 62 79-143 242-306 (429)
30 KOG2106 Uncharacterized conser 86.7 11 0.00024 35.7 11.2 93 37-139 409-506 (626)
31 PRK11028 6-phosphogluconolacto 86.6 16 0.00035 29.8 11.2 103 38-143 177-292 (330)
32 KOG0973 Histone transcription 86.5 2.5 5.5E-05 41.9 7.3 56 78-133 68-140 (942)
33 TIGR03866 PQQ_ABC_repeats PQQ- 86.4 13 0.00027 28.4 11.9 71 38-113 75-149 (300)
34 PTZ00420 coronin; Provisional 86.2 22 0.00048 33.3 12.9 71 38-113 128-201 (568)
35 PRK11028 6-phosphogluconolacto 85.6 18 0.0004 29.5 12.3 72 38-110 82-157 (330)
36 PRK01742 tolB translocation pr 83.8 12 0.00027 32.4 9.7 62 78-142 246-310 (429)
37 PRK01029 tolB translocation pr 83.4 23 0.0005 31.1 11.3 55 78-134 325-382 (428)
38 PRK02889 tolB translocation pr 82.7 23 0.00049 30.8 10.9 83 47-133 164-250 (427)
39 KOG0645 WD40 repeat protein [G 82.6 22 0.00047 31.4 10.5 57 78-134 104-162 (312)
40 KOG0273 Beta-transducin family 81.5 25 0.00053 33.0 11.0 56 77-134 449-505 (524)
41 KOG0288 WD40 repeat protein Ti 80.3 30 0.00066 31.9 11.0 52 82-133 390-442 (459)
42 TIGR02658 TTQ_MADH_Hv methylam 80.1 10 0.00022 33.4 7.9 75 40-116 252-337 (352)
43 KOG0316 Conserved WD40 repeat- 80.0 8.2 0.00018 33.7 7.0 82 53-134 143-258 (307)
44 KOG0263 Transcription initiati 79.6 8 0.00017 37.4 7.5 57 78-134 618-697 (707)
45 KOG0263 Transcription initiati 79.1 5.6 0.00012 38.5 6.3 44 73-116 568-614 (707)
46 PRK00178 tolB translocation pr 79.0 28 0.00061 29.7 10.1 62 78-142 241-305 (430)
47 PRK05137 tolB translocation pr 78.9 25 0.00055 30.4 9.9 62 78-142 244-308 (435)
48 KOG0289 mRNA splicing factor [ 78.8 9.3 0.0002 35.5 7.4 38 71-108 381-418 (506)
49 PF04841 Vps16_N: Vps16, N-ter 78.7 46 0.00099 29.3 12.0 56 78-134 215-271 (410)
50 TIGR03866 PQQ_ABC_repeats PQQ- 78.6 27 0.00058 26.6 11.8 58 81-142 32-90 (300)
51 PRK02889 tolB translocation pr 78.5 44 0.00095 29.0 11.3 62 78-142 238-302 (427)
52 KOG0272 U4/U6 small nuclear ri 78.5 7.9 0.00017 35.7 6.8 55 78-133 174-228 (459)
53 KOG0291 WD40-repeat-containing 78.4 10 0.00022 37.4 7.8 57 81-140 352-408 (893)
54 KOG0275 Conserved WD40 repeat- 78.1 2.1 4.5E-05 38.9 3.0 34 78-111 212-245 (508)
55 PRK13616 lipoprotein LpqB; Pro 76.8 57 0.0012 30.6 12.1 61 79-142 447-514 (591)
56 PF10282 Lactonase: Lactonase, 76.7 44 0.00096 28.1 11.3 104 38-143 194-310 (345)
57 KOG0266 WD40 repeat-containing 76.0 56 0.0012 28.9 12.6 75 36-113 247-322 (456)
58 PF10647 Gmad1: Lipoprotein Lp 75.5 43 0.00094 27.3 12.9 106 34-142 64-183 (253)
59 PF10282 Lactonase: Lactonase, 75.4 48 0.001 27.9 11.3 97 13-109 114-222 (345)
60 TIGR02800 propeller_TolB tol-p 75.4 46 0.00099 27.8 10.1 35 78-112 232-269 (417)
61 KOG0273 Beta-transducin family 74.6 30 0.00066 32.4 9.5 95 38-139 238-333 (524)
62 PF07676 PD40: WD40-like Beta 74.1 6.2 0.00013 22.8 3.4 24 78-101 7-30 (39)
63 KOG2055 WD40 repeat protein [G 74.1 30 0.00066 32.4 9.3 95 40-142 263-362 (514)
64 PRK01742 tolB translocation pr 73.8 58 0.0013 28.2 10.7 35 78-112 202-239 (429)
65 KOG0647 mRNA export protein (c 72.8 21 0.00045 31.9 7.7 101 36-139 28-130 (347)
66 KOG0266 WD40 repeat-containing 72.2 70 0.0015 28.3 11.4 47 80-127 247-293 (456)
67 KOG0641 WD40 repeat protein [G 72.1 8.5 0.00018 33.6 5.1 31 78-108 88-118 (350)
68 PF04053 Coatomer_WDAD: Coatom 71.6 12 0.00025 33.9 6.1 87 38-133 111-207 (443)
69 KOG0645 WD40 repeat protein [G 71.1 74 0.0016 28.1 11.5 65 43-109 22-91 (312)
70 PRK04043 tolB translocation pr 69.9 79 0.0017 27.9 11.1 62 78-143 231-296 (419)
71 KOG2110 Uncharacterized conser 69.9 87 0.0019 28.6 11.0 63 72-134 166-230 (391)
72 KOG4378 Nuclear protein COP1 [ 68.7 41 0.00089 32.2 9.0 104 35-142 121-226 (673)
73 PF07081 DUF1349: Protein of u 68.0 11 0.00023 29.8 4.5 58 41-98 83-142 (183)
74 KOG1523 Actin-related protein 67.3 17 0.00037 32.6 6.0 60 78-139 205-264 (361)
75 KOG1407 WD40 repeat protein [F 66.8 75 0.0016 28.1 9.7 97 38-143 67-166 (313)
76 PF02239 Cytochrom_D1: Cytochr 66.2 35 0.00077 29.6 7.8 42 73-114 70-113 (369)
77 PLN00181 protein SPA1-RELATED; 66.1 1.2E+02 0.0026 28.6 12.4 56 79-134 617-673 (793)
78 KOG0306 WD40-repeat-containing 65.9 10 0.00022 37.4 4.7 30 79-108 508-537 (888)
79 KOG0641 WD40 repeat protein [G 65.4 39 0.00084 29.6 7.7 60 78-139 31-104 (350)
80 TIGR02800 propeller_TolB tol-p 64.6 83 0.0018 26.3 9.5 34 78-111 320-356 (417)
81 PRK04922 tolB translocation pr 64.6 95 0.0021 26.9 10.5 57 81-141 337-396 (433)
82 PRK03629 tolB translocation pr 64.5 72 0.0016 27.8 9.4 34 80-113 331-367 (429)
83 PF02897 Peptidase_S9_N: Proly 64.4 28 0.0006 29.5 6.7 55 83-141 127-186 (414)
84 smart00320 WD40 WD40 repeats. 64.0 16 0.00034 17.7 4.6 29 78-106 11-39 (40)
85 PF04762 IKI3: IKI3 family; I 63.2 41 0.00089 33.2 8.3 70 71-142 416-504 (928)
86 KOG0267 Microtubule severing p 62.4 7.9 0.00017 37.8 3.3 39 81-119 156-198 (825)
87 PRK04792 tolB translocation pr 61.3 1.2E+02 0.0025 26.8 10.3 34 79-112 261-297 (448)
88 KOG2096 WD40 repeat protein [G 61.1 15 0.00033 33.2 4.6 59 29-97 333-391 (420)
89 PF02897 Peptidase_S9_N: Proly 61.0 1E+02 0.0022 26.1 12.1 121 18-143 146-295 (414)
90 PF04762 IKI3: IKI3 family; I 60.0 48 0.001 32.8 8.2 72 36-108 76-149 (928)
91 PRK00178 tolB translocation pr 59.7 1.1E+02 0.0024 26.1 11.1 61 78-141 197-260 (430)
92 PF00930 DPPIV_N: Dipeptidyl p 59.2 30 0.00064 29.2 5.9 57 40-101 285-349 (353)
93 KOG2394 WD40 protein DMR-N9 [G 58.5 25 0.00055 33.5 5.8 34 77-110 288-321 (636)
94 KOG0771 Prolactin regulatory e 58.3 34 0.00073 31.2 6.3 43 68-111 174-217 (398)
95 KOG1539 WD repeat protein [Gen 58.0 85 0.0018 31.4 9.3 43 69-111 234-277 (910)
96 KOG2139 WD40 repeat protein [G 57.7 1.6E+02 0.0034 27.2 11.1 61 78-142 237-298 (445)
97 PRK04922 tolB translocation pr 57.6 1.2E+02 0.0026 26.3 9.5 62 78-142 246-310 (433)
98 PRK13614 lipoprotein LpqB; Pro 57.4 98 0.0021 29.2 9.4 61 79-142 432-503 (573)
99 PF12894 Apc4_WD40: Anaphase-p 56.7 29 0.00063 22.0 4.2 26 81-106 13-38 (47)
100 PF15492 Nbas_N: Neuroblastoma 56.5 1E+02 0.0022 26.9 8.8 75 36-110 148-260 (282)
101 KOG1408 WD40 repeat protein [F 56.1 30 0.00064 34.5 5.9 73 36-108 30-109 (1080)
102 KOG0299 U3 snoRNP-associated p 56.0 1.4E+02 0.003 28.0 9.9 92 38-130 145-252 (479)
103 KOG2110 Uncharacterized conser 55.7 62 0.0013 29.5 7.5 62 47-108 184-247 (391)
104 PRK04792 tolB translocation pr 55.2 1.5E+02 0.0032 26.2 10.7 34 79-112 305-341 (448)
105 KOG1274 WD40 repeat protein [G 54.9 1.1E+02 0.0024 30.8 9.6 84 41-133 194-281 (933)
106 KOG3630 Nuclear pore complex, 54.4 45 0.00097 34.6 7.0 57 82-141 201-260 (1405)
107 KOG0640 mRNA cleavage stimulat 54.1 17 0.00036 33.0 3.7 33 77-109 110-142 (430)
108 PRK10115 protease 2; Provision 53.9 44 0.00095 31.6 6.6 56 81-141 128-188 (686)
109 PF06523 DUF1106: Protein of u 53.2 17 0.00037 26.4 3.0 20 74-93 39-59 (91)
110 COG2706 3-carboxymuconate cycl 53.0 61 0.0013 29.1 7.0 59 39-97 92-162 (346)
111 KOG2048 WD40 repeat protein [G 52.9 1.7E+02 0.0038 28.5 10.4 107 22-132 55-164 (691)
112 COG4946 Uncharacterized protei 52.0 35 0.00077 32.5 5.6 63 77-143 76-146 (668)
113 PF12142 PPO1_DWL: Polyphenol 52.0 12 0.00025 25.1 1.9 15 40-55 12-26 (54)
114 PF02239 Cytochrom_D1: Cytochr 50.5 1.7E+02 0.0037 25.4 10.8 84 51-142 10-95 (369)
115 cd07687 IgC_TCR_delta Immunogl 50.0 45 0.00097 24.1 4.7 44 50-96 1-49 (80)
116 KOG2055 WD40 repeat protein [G 49.9 77 0.0017 29.8 7.3 68 33-105 341-413 (514)
117 PRK13449 atpC F0F1 ATP synthas 49.3 56 0.0012 23.0 5.1 51 31-87 4-54 (88)
118 PLN00181 protein SPA1-RELATED; 48.6 2.4E+02 0.0052 26.6 12.7 91 38-133 535-628 (793)
119 KOG3617 WD40 and TPR repeat-co 48.2 42 0.00092 34.2 5.7 78 35-112 303-413 (1416)
120 PRK01029 tolB translocation pr 48.2 1.5E+02 0.0034 26.0 8.8 34 79-112 370-406 (428)
121 PF10584 Proteasome_A_N: Prote 47.4 8.1 0.00018 21.8 0.5 9 86-94 7-15 (23)
122 COG5290 IkappaB kinase complex 47.1 64 0.0014 32.7 6.7 76 31-108 59-141 (1243)
123 KOG4640 Anaphase-promoting com 46.8 52 0.0011 31.9 5.9 59 73-131 55-114 (665)
124 KOG1645 RING-finger-containing 45.2 58 0.0013 30.2 5.8 77 54-134 164-247 (463)
125 KOG1445 Tumor-specific antigen 44.7 82 0.0018 31.2 6.9 121 11-133 594-731 (1012)
126 KOG1446 Histone H3 (Lys4) meth 43.5 1.3E+02 0.0029 26.6 7.5 56 73-128 8-64 (311)
127 KOG0283 WD40 repeat-containing 43.1 1E+02 0.0022 30.2 7.3 61 80-142 452-520 (712)
128 KOG1523 Actin-related protein 42.2 1.3E+02 0.0027 27.3 7.2 60 74-133 5-66 (361)
129 COG3008 PqiB Paraquat-inducibl 41.5 60 0.0013 30.8 5.4 89 14-108 119-225 (553)
130 KOG0639 Transducin-like enhanc 40.6 1.2E+02 0.0027 29.2 7.2 53 55-108 439-494 (705)
131 KOG2111 Uncharacterized conser 40.3 1.3E+02 0.0028 27.1 7.0 38 71-108 216-255 (346)
132 KOG0279 G protein beta subunit 39.7 1.5E+02 0.0032 26.3 7.2 73 34-110 104-181 (315)
133 KOG4497 Uncharacterized conser 39.3 2.4E+02 0.0053 25.9 8.7 57 49-110 63-123 (447)
134 PRK13451 atpC F0F1 ATP synthas 39.2 1.1E+02 0.0023 22.1 5.5 49 32-86 2-50 (101)
135 PF08596 Lgl_C: Lethal giant l 39.0 1.1E+02 0.0024 27.2 6.5 56 75-131 82-144 (395)
136 KOG0316 Conserved WD40 repeat- 38.5 60 0.0013 28.5 4.6 34 78-111 16-49 (307)
137 KOG2394 WD40 protein DMR-N9 [G 38.4 1.1E+02 0.0025 29.3 6.7 79 31-111 286-364 (636)
138 PF15043 CNRIP1: CB1 cannabino 37.1 2.2E+02 0.0048 23.0 8.1 76 57-132 6-88 (161)
139 KOG0974 WD-repeat protein WDR6 37.0 1.9E+02 0.0042 29.3 8.3 74 55-131 154-244 (967)
140 PF01419 Jacalin: Jacalin-like 36.0 76 0.0016 22.9 4.3 96 19-129 10-114 (130)
141 KOG4328 WD40 protein [Function 34.9 3.9E+02 0.0085 25.2 9.5 63 28-90 315-380 (498)
142 KOG0319 WD40-repeat-containing 34.6 2.7E+02 0.0059 27.6 8.7 97 24-129 273-372 (775)
143 COG4831 Roadblock/LC7 domain [ 34.5 33 0.00072 25.9 2.1 19 79-97 12-30 (109)
144 KOG0772 Uncharacterized conser 34.1 74 0.0016 30.5 4.8 55 53-108 336-393 (641)
145 KOG0277 Peroxisomal targeting 33.7 3.4E+02 0.0074 24.0 10.1 105 30-142 96-208 (311)
146 KOG4328 WD40 protein [Function 32.4 1.6E+02 0.0035 27.7 6.5 79 32-111 183-267 (498)
147 KOG1912 WD40 repeat protein [G 31.7 43 0.00094 33.6 2.9 65 68-133 506-574 (1062)
148 PF06268 Fascin: Fascin domain 31.6 1.5E+02 0.0033 20.9 5.2 53 46-101 1-55 (111)
149 KOG0305 Anaphase promoting com 31.5 3E+02 0.0066 25.7 8.2 74 34-111 386-463 (484)
150 PF11429 Colicin_D: Colicin D; 31.0 79 0.0017 23.2 3.6 28 39-66 52-81 (92)
151 PRK00571 atpC F0F1 ATP synthas 30.6 1.1E+02 0.0024 22.8 4.5 52 30-87 3-54 (135)
152 TIGR02171 Fb_sc_TIGR02171 Fibr 30.3 4.2E+02 0.009 26.9 9.3 73 71-143 340-419 (912)
153 KOG0282 mRNA splicing factor [ 30.1 86 0.0019 29.4 4.5 50 83-133 436-485 (503)
154 PRK13442 atpC F0F1 ATP synthas 30.1 47 0.001 23.4 2.2 48 30-82 5-52 (89)
155 KOG0306 WD40-repeat-containing 29.9 2.5E+02 0.0054 28.2 7.6 32 80-111 66-97 (888)
156 PRK13615 lipoprotein LpqB; Pro 29.4 4.9E+02 0.011 24.6 11.7 63 78-142 415-487 (557)
157 KOG2321 WD40 repeat protein [G 29.3 5.6E+02 0.012 25.2 10.3 105 29-133 169-282 (703)
158 PF09941 DUF2173: Uncharacteri 29.3 61 0.0013 24.4 2.8 21 78-98 9-29 (108)
159 PF03285 Paralemmin: Paralemmi 28.8 35 0.00075 29.6 1.6 18 42-59 90-107 (278)
160 KOG0293 WD40 repeat-containing 28.5 3.2E+02 0.0069 25.8 7.7 55 80-134 225-281 (519)
161 PF14583 Pectate_lyase22: Olig 28.3 1.4E+02 0.003 27.1 5.3 73 39-113 40-114 (386)
162 KOG1445 Tumor-specific antigen 27.9 1.8E+02 0.0038 29.0 6.2 60 78-142 719-782 (1012)
163 KOG4680 Uncharacterized conser 27.7 1.3E+02 0.0028 24.1 4.5 48 28-80 14-65 (153)
164 KOG0772 Uncharacterized conser 27.6 2.5E+02 0.0054 27.1 7.0 96 35-132 268-374 (641)
165 KOG1539 WD repeat protein [Gen 27.1 3E+02 0.0064 27.8 7.7 105 37-143 495-647 (910)
166 KOG0647 mRNA export protein (c 27.1 4.1E+02 0.0089 24.0 7.9 72 35-110 73-146 (347)
167 KOG0279 G protein beta subunit 26.2 4.7E+02 0.01 23.3 10.2 54 81-134 107-160 (315)
168 KOG1273 WD40 repeat protein [G 25.2 4.3E+02 0.0092 24.2 7.8 67 39-107 157-224 (405)
169 PF07865 DUF1652: Protein of u 25.2 55 0.0012 22.7 1.8 27 27-53 11-43 (69)
170 PF08814 XisH: XisH protein; 24.4 60 0.0013 25.4 2.1 40 26-66 22-62 (135)
171 PF14283 DUF4366: Domain of un 24.2 1.2E+02 0.0025 25.3 3.9 36 28-63 50-90 (218)
172 KOG0643 Translation initiation 23.8 44 0.00096 29.6 1.4 29 80-108 288-316 (327)
173 CHL00063 atpE ATP synthase CF1 22.6 1.8E+02 0.0039 21.9 4.4 47 31-82 3-49 (134)
174 KOG2096 WD40 repeat protein [G 22.6 1.5E+02 0.0031 27.2 4.4 30 79-108 86-115 (420)
175 COG0355 AtpC F0F1-type ATP syn 22.4 2.9E+02 0.0063 21.2 5.5 53 31-89 4-56 (135)
176 PF06433 Me-amine-dh_H: Methyl 22.4 3.3E+02 0.0072 24.3 6.5 70 41-112 243-323 (342)
177 KOG0267 Microtubule severing p 22.4 97 0.0021 30.7 3.4 40 73-112 64-103 (825)
178 cd00257 Fascin Fascin-like dom 22.2 2.8E+02 0.0061 19.3 5.5 50 47-100 10-62 (119)
179 PRK13444 atpC F0F1 ATP synthas 22.0 85 0.0018 23.4 2.5 47 31-82 6-52 (127)
180 PRK13446 atpC F0F1 ATP synthas 21.9 2.4E+02 0.0051 21.2 4.9 48 30-82 4-51 (136)
181 COG3391 Uncharacterized conser 21.4 5.3E+02 0.012 22.2 8.0 70 38-111 118-192 (381)
182 TIGR01216 ATP_synt_epsi ATP sy 21.2 2.5E+02 0.0054 20.8 4.8 46 32-82 3-48 (130)
183 COG4703 Uncharacterized protei 21.2 1.1E+02 0.0024 21.8 2.7 19 78-96 29-48 (74)
184 PF08134 cIII: cIII protein fa 21.1 54 0.0012 21.1 1.0 15 11-25 2-16 (44)
185 PRK14736 atpC F0F1 ATP synthas 21.1 2.4E+02 0.0052 21.4 4.8 51 31-87 4-54 (133)
186 TIGR03166 alt_F1F0_F1_eps alte 21.0 2.4E+02 0.0051 21.1 4.7 43 36-83 5-48 (122)
187 KOG0319 WD40-repeat-containing 20.8 4.7E+02 0.01 26.0 7.6 77 32-111 460-537 (775)
188 PF07930 DAP_B: D-aminopeptida 20.8 63 0.0014 23.8 1.5 30 29-58 3-33 (88)
189 KOG0272 U4/U6 small nuclear ri 20.7 1.3E+02 0.0028 28.0 3.7 29 80-108 346-374 (459)
190 PRK00539 atpC F0F1 ATP synthas 20.6 2.6E+02 0.0057 21.1 4.9 52 31-88 4-55 (133)
191 KOG4283 Transcription-coupled 20.4 4E+02 0.0087 24.2 6.6 70 69-142 134-206 (397)
192 PF08512 Rtt106: Histone chape 20.4 97 0.0021 21.9 2.4 48 24-76 23-71 (95)
193 KOG0286 G-protein beta subunit 20.4 3.8E+02 0.0082 24.1 6.4 54 44-108 249-302 (343)
194 PF06519 TolA: TolA C-terminal 20.2 99 0.0021 22.3 2.4 18 82-99 40-57 (96)
195 KOG0973 Histone transcription 20.2 4.1E+02 0.0088 27.1 7.2 80 25-108 119-200 (942)
No 1
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.3e-45 Score=327.26 Aligned_cols=124 Identities=35% Similarity=0.606 Sum_probs=117.0
Q ss_pred CCCcceEEEeeCCCceecCCCCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecC-CCCceeEEEecCCCcEEE
Q 043355 17 GSGALSHVYIQYPPLRCSIPESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSI-PEGPILSIRFSLDTKLIA 95 (143)
Q Consensus 17 ~~~~~~h~~i~~~plR~~~~~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~fri-d~G~I~sIKFS~D~KiLA 95 (143)
|+|||+|+||+||-|||++|+++||||||+|||+|||||||+|||+||+++ ++-|++|+| |+|+|+|||||||+|+||
T Consensus 4 gsGalyhelihhPslfcnipesngvFfDDaNkqlfavrSggatgvvvkgpn-dDVpiSfdm~d~G~I~SIkFSlDnkilA 82 (657)
T KOG2377|consen 4 GSGALYHELIHHPSLFCNIPESNGVFFDDANKQLFAVRSGGATGVVVKGPN-DDVPISFDMDDKGEIKSIKFSLDNKILA 82 (657)
T ss_pred CCcceEEEEecCchhhccCCcccceeeccCcceEEEEecCCeeEEEEeCCC-CCCCceeeecCCCceeEEEeccCcceEE
Confidence 568999999999999999999999999999999999999999999997765 446788887 999999999999999999
Q ss_pred EecCCCeEEEEEc---CCCceEEEEecCCCCcEEEEEeccCCCceEEEEeC
Q 043355 96 IQRSSSEIQFWIR---ETSEAFSHRCRSDSENILGFFWTDCPLCDFVVVKN 143 (143)
Q Consensus 96 IQRs~~sVEFvn~---~~~~~~~q~cK~k~~~IlGF~Wt~~~~cdivlVTn 143 (143)
|||++++|||+|| ++-.++.|+||.|++.|+||||+++. |++||||
T Consensus 83 VQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~--e~A~i~~ 131 (657)
T KOG2377|consen 83 VQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST--EIAFITD 131 (657)
T ss_pred EEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe--eEEEEec
Confidence 9999999999999 56699999999999999999999995 9999997
No 2
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.05 E-value=0.054 Score=39.37 Aligned_cols=102 Identities=16% Similarity=0.196 Sum_probs=69.3
Q ss_pred CCCCcceeEeCCCcEEEEEcC-CCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCce
Q 043355 35 IPESRGLHYDDGTKLLISSTS-NQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEA 113 (143)
Q Consensus 35 ~~~~~~vFyDDank~v~avrs-ggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~ 113 (143)
...++.+-|++..+.+++... |.+.-|.... ......+....++|.++.|++|++.|++--.+..|.+++..++..
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~ 85 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLET---GELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC 85 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeC---CCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc
Confidence 345777888877677766653 4444555521 222233344667889999999999999999899999999977522
Q ss_pred EEEEecCCCCcEEEEEeccCCCceEEEEe
Q 043355 114 FSHRCRSDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 114 ~~q~cK~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
. ...+.....|.++.|.... ++++..
T Consensus 86 ~-~~~~~~~~~i~~~~~~~~~--~~~~~~ 111 (289)
T cd00200 86 V-RTLTGHTSYVSSVAFSPDG--RILSSS 111 (289)
T ss_pred e-EEEeccCCcEEEEEEcCCC--CEEEEe
Confidence 2 2223445579999999876 666543
No 3
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=96.41 E-value=0.22 Score=36.09 Aligned_cols=99 Identities=19% Similarity=0.250 Sum_probs=65.6
Q ss_pred CCcceeEeCCCcEEEEEcC-CCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEE
Q 043355 37 ESRGLHYDDGTKLLISSTS-NQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFS 115 (143)
Q Consensus 37 ~~~~vFyDDank~v~avrs-ggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~ 115 (143)
.++.+-|+..++.+++... +.+.-|.... ......+...+++|.++.|++|+++++.-..+..|.+++..++....
T Consensus 179 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~ 255 (289)
T cd00200 179 EVNSVAFSPDGEKLLSSSSDGTIKLWDLST---GKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQ 255 (289)
T ss_pred ccceEEECCCcCEEEEecCCCcEEEEECCC---CceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEE
Confidence 4677778777767766654 4444444411 11222232355699999999999999888879999999997764333
Q ss_pred EEecCCCCcEEEEEeccCCCceEEEE
Q 043355 116 HRCRSDSENILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 116 q~cK~k~~~IlGF~Wt~~~~cdivlV 141 (143)
. .+.....|.++.|..+. ..++.
T Consensus 256 ~-~~~~~~~i~~~~~~~~~--~~l~~ 278 (289)
T cd00200 256 T-LSGHTNSVTSLAWSPDG--KRLAS 278 (289)
T ss_pred E-ccccCCcEEEEEECCCC--CEEEE
Confidence 2 23455679999998875 44443
No 4
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=95.07 E-value=0.63 Score=36.57 Aligned_cols=95 Identities=8% Similarity=0.153 Sum_probs=57.8
Q ss_pred CcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecC---CCeEEEEEcCCCceE
Q 043355 38 SRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRS---SSEIQFWIRETSEAF 114 (143)
Q Consensus 38 ~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs---~~sVEFvn~~~~~~~ 114 (143)
+..+-+.....+++++.+..--.+.+ .+.. ....+.+..+++-.|+|||++++||+--- +-.|+|++..+...
T Consensus 62 I~~~~WsP~g~~favi~g~~~~~v~l--yd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~- 137 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGSMPAKVTL--YDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK- 137 (194)
T ss_pred eEEEEECcCCCEEEEEEccCCcccEE--EcCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE-
Confidence 77777877666655553211012333 3332 22223456788889999999999999643 34699999984432
Q ss_pred EEEecCCCCcEEEEEeccCCCceEEE
Q 043355 115 SHRCRSDSENILGFFWTDCPLCDFVV 140 (143)
Q Consensus 115 ~q~cK~k~~~IlGF~Wt~~~~cdivl 140 (143)
.++.+...+....|-..- ..++
T Consensus 138 --i~~~~~~~~t~~~WsPdG--r~~~ 159 (194)
T PF08662_consen 138 --ISTFEHSDATDVEWSPDG--RYLA 159 (194)
T ss_pred --eeccccCcEEEEEEcCCC--CEEE
Confidence 333344456778887665 4444
No 5
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.46 Score=41.64 Aligned_cols=96 Identities=22% Similarity=0.172 Sum_probs=61.7
Q ss_pred eeEeCCCcEEEEEcCCCeEEEEE---ccCCCCCCCceecCC---CCceeEEEecCCCcEEEEecCCCeEEEEEcCCCc--
Q 043355 41 LHYDDGTKLLISSTSNQIFSWKT---VPFNPLATSTSDSIP---EGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSE-- 112 (143)
Q Consensus 41 vFyDDank~v~avrsggv~gv~v---~~~~p~~~~~~frid---~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~-- 112 (143)
.=||+ .++|||+-.++- .++. .+. ..+|-..|.+. .-+.-.|+||||||.|=|--+..-+-.+.-.+|+
T Consensus 146 ~AfDp-~GLifA~~~~~~-~IkLyD~Rs~-dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~ 222 (311)
T KOG1446|consen 146 AAFDP-EGLIFALANGSE-LIKLYDLRSF-DKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVK 222 (311)
T ss_pred eeECC-CCcEEEEecCCC-eEEEEEeccc-CCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEe
Confidence 34654 578999866553 4443 222 13344677774 4488999999999999999888888888777773
Q ss_pred -eEEEEecCCCCcEEEEEeccCCCceEEEEe
Q 043355 113 -AFSHRCRSDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 113 -~~~q~cK~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
.|+..-..++-+ ++...|-.. ++||..
T Consensus 223 ~tfs~~~~~~~~~-~~a~ftPds--~Fvl~g 250 (311)
T KOG1446|consen 223 STFSGYPNAGNLP-LSATFTPDS--KFVLSG 250 (311)
T ss_pred eeEeeccCCCCcc-eeEEECCCC--cEEEEe
Confidence 333333333333 566666655 666653
No 6
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=94.27 E-value=0.23 Score=43.74 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=53.7
Q ss_pred CCCceecC-CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEEEecCCCCcEEEEEeccCCCceEEE
Q 043355 70 ATSTSDSI-PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENILGFFWTDCPLCDFVV 140 (143)
Q Consensus 70 ~~~~~fri-d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~~cdivl 140 (143)
..|+.... -+|+|..|||+||+-.+|--=+++.|=+||.....+=-..-|..+..|.+..|+... ..|+
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~--s~i~ 106 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDG--SHIL 106 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCC--CEEE
Confidence 34444444 889999999999999999999999999999643333334455778889999999886 5443
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=94.19 E-value=0.36 Score=45.29 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=49.1
Q ss_pred CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEEEecCCCCcEEEEEeccCC
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
-+|+|.+|+||||+++||.---+..|-...+++...-....-...++|++.-|--++
T Consensus 486 h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n 542 (603)
T KOG0318|consen 486 HRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN 542 (603)
T ss_pred ccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCc
Confidence 789999999999999999999999999988888766444445568889999998887
No 8
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=93.53 E-value=0.7 Score=40.25 Aligned_cols=82 Identities=16% Similarity=0.245 Sum_probs=54.2
Q ss_pred CcceeEeCCCcEEEEEcC-CCeEEEEEcc---CCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCC--
Q 043355 38 SRGLHYDDGTKLLISSTS-NQIFSWKTVP---FNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETS-- 111 (143)
Q Consensus 38 ~~~vFyDDank~v~avrs-ggv~gv~v~~---~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~-- 111 (143)
+..+--+..-+.|.+..+ |.-+-|..-. .++-++...|++-.|-|+..+||||+|+||.--++++|-++|.++=
T Consensus 170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~k 249 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFK 249 (311)
T ss_pred eeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCcee
Confidence 334444444444455533 3333344422 1234455667788999999999999999999999999999999764
Q ss_pred ceEEEEec
Q 043355 112 EAFSHRCR 119 (143)
Q Consensus 112 ~~~~q~cK 119 (143)
.|...+|.
T Consensus 250 le~~l~gh 257 (311)
T KOG0315|consen 250 LELVLTGH 257 (311)
T ss_pred eEEEeecC
Confidence 44444554
No 9
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.17 E-value=0.66 Score=42.69 Aligned_cols=83 Identities=19% Similarity=0.317 Sum_probs=61.8
Q ss_pred EeeCCCce-ecCCCCcceeE----eCCCcEEEEEcCC-CeEEEEEccCCCCCCCceec-CCCCceeEEEecCCCcEEEEe
Q 043355 25 YIQYPPLR-CSIPESRGLHY----DDGTKLLISSTSN-QIFSWKTVPFNPLATSTSDS-IPEGPILSIRFSLDTKLIAIQ 97 (143)
Q Consensus 25 ~i~~~plR-~~~~~~~~vFy----DDank~v~avrsg-gv~gv~v~~~~p~~~~~~fr-id~G~I~sIKFS~D~KiLAIQ 97 (143)
+|.--|.| +|+|++..-|| |=....++||-.| .++-|..... +..... +++..|-|+++|+|+++|||-
T Consensus 160 ~~~~~p~rvLDaP~l~dDfY~nlldWss~n~laValg~~vylW~~~s~----~v~~l~~~~~~~vtSv~ws~~G~~LavG 235 (484)
T KOG0305|consen 160 KIPQTPYRVLDAPGLQDDFYLNLLDWSSANVLAVALGQSVYLWSASSG----SVTELCSFGEELVTSVKWSPDGSHLAVG 235 (484)
T ss_pred cccCChhhhccCCcccccHhhhHhhcccCCeEEEEecceEEEEecCCC----ceEEeEecCCCceEEEEECCCCCEEEEe
Confidence 55555666 68999998888 5667779999776 4555655221 222222 357899999999999999999
Q ss_pred cCCCeEEEEEcCCC
Q 043355 98 RSSSEIQFWIRETS 111 (143)
Q Consensus 98 Rs~~sVEFvn~~~~ 111 (143)
+.+-.|++++.++.
T Consensus 236 ~~~g~v~iwD~~~~ 249 (484)
T KOG0305|consen 236 TSDGTVQIWDVKEQ 249 (484)
T ss_pred ecCCeEEEEehhhc
Confidence 99999999998543
No 10
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=92.90 E-value=0.34 Score=44.22 Aligned_cols=54 Identities=17% Similarity=0.389 Sum_probs=46.7
Q ss_pred CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEEEecCCCCcEEEEEecc
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENILGFFWTD 132 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~ 132 (143)
-.++|+|+.||||++.||----+.+|-|+...|-+ -..+||..+.=++..-|--
T Consensus 114 H~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT-p~~t~KgH~~WVlcvawsP 167 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET-PLFTCKGHKNWVLCVAWSP 167 (480)
T ss_pred CCCcEEEEEecCCCceEEecCCCceEEeeccCCCC-cceeecCCccEEEEEEECC
Confidence 34599999999999999999999999999997753 3468999999899998854
No 11
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=92.37 E-value=0.62 Score=45.42 Aligned_cols=62 Identities=19% Similarity=0.336 Sum_probs=47.9
Q ss_pred CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCC-----ceEEEEec--CCCCcEEEEEeccCCCceEEEEe
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETS-----EAFSHRCR--SDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~-----~~~~q~cK--~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
-+++|-+|+||||+|.+||-+. +.+|++..+.. ..|.+.-. ..-..|...-|.+.. .+++++
T Consensus 95 fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DS--r~l~~g 163 (893)
T KOG0291|consen 95 FKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDS--RLLVTG 163 (893)
T ss_pred ecCccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCC--ceEEec
Confidence 4668899999999999999874 67999988543 44666444 335779999999998 777663
No 12
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=91.99 E-value=0.97 Score=39.75 Aligned_cols=55 Identities=31% Similarity=0.417 Sum_probs=37.2
Q ss_pred EEecCCCcEEEEecCCC-----------eEEEEEcCCCceEEEEecCCCCcEEEEEeccCCCceEEEEeC
Q 043355 85 IRFSLDTKLIAIQRSSS-----------EIQFWIRETSEAFSHRCRSDSENILGFFWTDCPLCDFVVVKN 143 (143)
Q Consensus 85 IKFS~D~KiLAIQRs~~-----------sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~~cdivlVTn 143 (143)
+..+|.+..|||-|.++ .|++.+. .|... .++..++..|++++|+++. ++|+|++
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll-~~i~w~~~~iv~~~wt~~e--~LvvV~~ 99 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLL-SSIPWDSGRIVGMGWTDDE--ELVVVQS 99 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEe-EEEEECCCCEEEEEECCCC--eEEEEEc
Confidence 45577777777777772 2333332 33443 3366666899999999999 9999874
No 13
>PTZ00421 coronin; Provisional
Probab=91.67 E-value=8.5 Score=34.97 Aligned_cols=105 Identities=12% Similarity=0.143 Sum_probs=68.4
Q ss_pred CCceecCCCCcceeEeCCC-cEEEEEcCCC-eEEEEEccCCCC----CCCceecCCCCceeEEEecCCC-cEEEEecCCC
Q 043355 29 PPLRCSIPESRGLHYDDGT-KLLISSTSNQ-IFSWKTVPFNPL----ATSTSDSIPEGPILSIRFSLDT-KLIAIQRSSS 101 (143)
Q Consensus 29 ~plR~~~~~~~~vFyDDan-k~v~avrsgg-v~gv~v~~~~p~----~~~~~frid~G~I~sIKFS~D~-KiLAIQRs~~ 101 (143)
|.|+-+-..++.+=|+..+ .+|++-..++ +.-|.+...+.. .+...+.--.++|.+++|+|++ ++||.-=.+.
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 3466666668888898743 3444443344 445777322111 1112233355699999999986 7999888899
Q ss_pred eEEEEEcCCCceEEEEecCCCCcEEEEEeccCC
Q 043355 102 EIQFWIRETSEAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 102 sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
.|-+|+.+++.. .+..+.....|.+..|-...
T Consensus 149 tVrIWDl~tg~~-~~~l~~h~~~V~sla~spdG 180 (493)
T PTZ00421 149 VVNVWDVERGKA-VEVIKCHSDQITSLEWNLDG 180 (493)
T ss_pred EEEEEECCCCeE-EEEEcCCCCceEEEEEECCC
Confidence 999999988743 34455556779999997654
No 14
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=90.57 E-value=4.8 Score=38.04 Aligned_cols=89 Identities=13% Similarity=0.123 Sum_probs=61.3
Q ss_pred CCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEEEecCCCCc
Q 043355 45 DGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSEN 124 (143)
Q Consensus 45 Dank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~ 124 (143)
|.++.|+.++.|...+|-= .+- .+.-.+.-+-|.|-++|.|+|+|.+++--..-++=.+..++|+. ...=|+.-.-
T Consensus 370 ~~e~~vigt~dgD~l~iyd--~~~-~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv-~~idkS~~~l 445 (668)
T COG4946 370 DPEGDVIGTNDGDKLGIYD--KDG-GEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV-RLIDKSEYGL 445 (668)
T ss_pred CCcceEEeccCCceEEEEe--cCC-ceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe-eEecccccce
Confidence 4568888887776666544 211 11122233778999999999999999876666666666677743 3344566678
Q ss_pred EEEEEeccCCCceEE
Q 043355 125 ILGFFWTDCPLCDFV 139 (143)
Q Consensus 125 IlGF~Wt~~~~cdiv 139 (143)
|++|.|-.|. +++
T Consensus 446 Itdf~~~~ns--r~i 458 (668)
T COG4946 446 ITDFDWHPNS--RWI 458 (668)
T ss_pred eEEEEEcCCc--eeE
Confidence 9999999887 543
No 15
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=90.17 E-value=2.5 Score=33.22 Aligned_cols=67 Identities=15% Similarity=0.228 Sum_probs=43.3
Q ss_pred CCCCceecC-CCCceeEEEecCCCcEEEEec--CCCeEEEEEcCCCceEEEEecCCCCcEEEEEeccCCCceEEEE
Q 043355 69 LATSTSDSI-PEGPILSIRFSLDTKLIAIQR--SSSEIQFWIRETSEAFSHRCRSDSENILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 69 ~~~~~~fri-d~G~I~sIKFS~D~KiLAIQR--s~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~~cdivlV 141 (143)
+.+.....+ .+|+|.++.+||+++-+||-. .+..|.|.+...... .... +..+-...|--+. .++++
T Consensus 48 ~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i--~~~~--~~~~n~i~wsP~G--~~l~~ 117 (194)
T PF08662_consen 48 NIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKI--FSFG--TQPRNTISWSPDG--RFLVL 117 (194)
T ss_pred CCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEe--Eeec--CCCceEEEECCCC--CEEEE
Confidence 334455566 578999999999998877664 466899988852222 2222 3344566787665 55554
No 16
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=89.83 E-value=1.5 Score=43.37 Aligned_cols=65 Identities=14% Similarity=0.325 Sum_probs=49.7
Q ss_pred CCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCC
Q 043355 46 GTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETS 111 (143)
Q Consensus 46 ank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~ 111 (143)
+++..++--|+. ++|++...........+|=-+|||++++|+|.+++||+--.+-.|.||++.++
T Consensus 106 g~g~~iaagsdD-~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~ 170 (933)
T KOG1274|consen 106 GSGKMIAAGSDD-TAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDG 170 (933)
T ss_pred cCCcEEEeecCc-eeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccc
Confidence 444555553444 77887444445555666768999999999999999999999999999999664
No 17
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=89.70 E-value=7.4 Score=33.82 Aligned_cols=89 Identities=16% Similarity=0.144 Sum_probs=58.1
Q ss_pred CCcEEEEEcCCCeEEEEEccCCCCC--CCceecCCCC-ceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEEEecCC-
Q 043355 46 GTKLLISSTSNQIFSWKTVPFNPLA--TSTSDSIPEG-PILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRSD- 121 (143)
Q Consensus 46 ank~v~avrsggv~gv~v~~~~p~~--~~~~frid~G-~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k- 121 (143)
.|+.++|+-.+...++..+.++=.. ...+..-|+- +=+-+.+|||+.+||.-+|.-.|.+.+....+.|.-+-...
T Consensus 7 ~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~ 86 (282)
T PF15492_consen 7 SDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSF 86 (282)
T ss_pred CCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCccccc
Confidence 3788999988888888773321111 1112222555 55999999999999999999999999986655554322211
Q ss_pred ----CCcEEEEEeccCC
Q 043355 122 ----SENILGFFWTDCP 134 (143)
Q Consensus 122 ----~~~IlGF~Wt~~~ 134 (143)
+..|-|...++..
T Consensus 87 ~~d~~~Aiagl~Fl~~~ 103 (282)
T PF15492_consen 87 PGDLSDAIAGLIFLEYK 103 (282)
T ss_pred CCccccceeeeEeeccc
Confidence 2336666555543
No 18
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=89.40 E-value=2 Score=24.23 Aligned_cols=33 Identities=27% Similarity=0.288 Sum_probs=27.1
Q ss_pred ecCCCCceeEEEecCCCcEEEEecCCCeEEEEE
Q 043355 75 DSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWI 107 (143)
Q Consensus 75 frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn 107 (143)
++-.+++|.+|+|+|+++.||.-=.+..|-+++
T Consensus 7 ~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 7 FRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 334678999999999999999888888887764
No 19
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=88.98 E-value=1.5 Score=42.00 Aligned_cols=57 Identities=16% Similarity=0.362 Sum_probs=44.8
Q ss_pred CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEEEec-CCCCcEEEEEeccCC
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCR-SDSENILGFFWTDCP 134 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK-~k~~~IlGF~Wt~~~ 134 (143)
-+-+|.|.+||-+.+.||+-|++-.|||+|..++=-....-. .+...|=|..|..+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~ 81 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG 81 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC
Confidence 566899999999999999999999999999987622222222 456779999999554
No 20
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=88.53 E-value=0.57 Score=30.01 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=21.0
Q ss_pred CceeEEEecCCCc---EEEEecCCCeEEEEEc
Q 043355 80 GPILSIRFSLDTK---LIAIQRSSSEIQFWIR 108 (143)
Q Consensus 80 G~I~sIKFS~D~K---iLAIQRs~~sVEFvn~ 108 (143)
|.|+++||||+.. +||+-=....|-.+..
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~ 32 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDT 32 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEc
Confidence 7899999998765 8888655555554443
No 21
>PTZ00420 coronin; Provisional
Probab=88.29 E-value=19 Score=33.71 Aligned_cols=109 Identities=10% Similarity=0.145 Sum_probs=65.8
Q ss_pred CCCceecCCCCcceeEeCCCcEEEEE----cCCCeEEE-EEccCCCCCCCc--eecCCCCceeEEEecCC-CcEEEEecC
Q 043355 28 YPPLRCSIPESRGLHYDDGTKLLISS----TSNQIFSW-KTVPFNPLATST--SDSIPEGPILSIRFSLD-TKLIAIQRS 99 (143)
Q Consensus 28 ~~plR~~~~~~~~vFyDDank~v~av----rsggv~gv-~v~~~~p~~~~~--~frid~G~I~sIKFS~D-~KiLAIQRs 99 (143)
|.-||..-......+- .+|...+|+ -+||..++ .+ ..+...+. .++--.++|.++.|||+ +++||.-=.
T Consensus 19 y~diri~~~~~~s~~i-a~n~~~~A~~w~~~gGG~~gvI~L--~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~ 95 (568)
T PTZ00420 19 FDDLRICSRVIDSCGI-ACSSGFVAVPWEVEGGGLIGAIRL--ENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSE 95 (568)
T ss_pred eccEEccccccCceeE-eeCCCeEEEEEEcCCCCceeEEEe--eecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeC
Confidence 6777775555544443 334433333 45666653 33 22322222 22335679999999997 689999989
Q ss_pred CCeEEEEEcCCCceE-------EEEecCCCCcEEEEEeccCCCceEEEE
Q 043355 100 SSEIQFWIRETSEAF-------SHRCRSDSENILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 100 ~~sVEFvn~~~~~~~-------~q~cK~k~~~IlGF~Wt~~~~cdivlV 141 (143)
+.+|-.|+..++.+. ...-...+..|....|-... +.+|+
T Consensus 96 DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g--~~iLa 142 (568)
T PTZ00420 96 DLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMN--YYIMC 142 (568)
T ss_pred CCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCC--CeEEE
Confidence 999999999654221 11223445678888887654 44443
No 22
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=88.27 E-value=24 Score=33.57 Aligned_cols=117 Identities=14% Similarity=0.200 Sum_probs=74.7
Q ss_pred ccCCCcceEEEeeCCCceecCCC------CcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceec--C-CCCceeEE
Q 043355 15 LSGSGALSHVYIQYPPLRCSIPE------SRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDS--I-PEGPILSI 85 (143)
Q Consensus 15 ~~~~~~~~h~~i~~~plR~~~~~------~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~fr--i-d~G~I~sI 85 (143)
+.|+.--+-+|.+=||.+|+..- ++.|=|-.--.+..++-++| ..+.-.+++ .++.-.+. . -+|-|.++
T Consensus 164 ~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDg-ki~iyDGkt-ge~vg~l~~~~aHkGsIfal 241 (603)
T KOG0318|consen 164 ATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDG-KIYIYDGKT-GEKVGELEDSDAHKGSIFAL 241 (603)
T ss_pred EeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCc-cEEEEcCCC-ccEEEEecCCCCccccEEEE
Confidence 44556777889999999998654 45555655433333444444 333332221 22222222 2 57899999
Q ss_pred EecCCCcEEEEecCCCeEEEEEcCCCc-eEEEEecCC-CCcEEEEEeccCC
Q 043355 86 RFSLDTKLIAIQRSSSEIQFWIRETSE-AFSHRCRSD-SENILGFFWTDCP 134 (143)
Q Consensus 86 KFS~D~KiLAIQRs~~sVEFvn~~~~~-~~~q~cK~k-~~~IlGF~Wt~~~ 134 (143)
.+|||.+-++.---++++.+|+..++. +-+-.|-.+ -...+|-.|+ +.
T Consensus 242 sWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-kd 291 (603)
T KOG0318|consen 242 SWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-KD 291 (603)
T ss_pred EECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-CC
Confidence 999999999999999999999998872 222222211 2569999999 44
No 23
>PTZ00421 coronin; Provisional
Probab=88.19 E-value=18 Score=32.86 Aligned_cols=56 Identities=14% Similarity=0.197 Sum_probs=42.0
Q ss_pred CCCceeEEEecC-CCcEEEEecCCCeEEEEEcCCCc------eEEEEecCCCCcEEEEEeccC
Q 043355 78 PEGPILSIRFSL-DTKLIAIQRSSSEIQFWIRETSE------AFSHRCRSDSENILGFFWTDC 133 (143)
Q Consensus 78 d~G~I~sIKFS~-D~KiLAIQRs~~sVEFvn~~~~~------~~~q~cK~k~~~IlGF~Wt~~ 133 (143)
-.|+|.+++||| |+++||.--.+.+|-+|+.+++. +-.......+..|....|-..
T Consensus 74 H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~ 136 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPS 136 (493)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcC
Confidence 677999999999 88999999999999999996542 122333445566777777543
No 24
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=88.17 E-value=0.68 Score=44.51 Aligned_cols=31 Identities=29% Similarity=0.515 Sum_probs=27.4
Q ss_pred CCCceeEEEecCCCcEEEEecCCCeEEEEEc
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSSEIQFWIR 108 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~ 108 (143)
-+|.|-++|||+|||+||.-=-+.-|-.|..
T Consensus 266 h~gaIw~mKFS~DGKyLAsaGeD~virVWkV 296 (712)
T KOG0283|consen 266 HKGAIWAMKFSHDGKYLASAGEDGVIRVWKV 296 (712)
T ss_pred cCCcEEEEEeCCCCceeeecCCCceEEEEEE
Confidence 4889999999999999999888888877766
No 25
>PRK05137 tolB translocation protein TolB; Provisional
Probab=88.02 E-value=11 Score=32.53 Aligned_cols=83 Identities=13% Similarity=0.010 Sum_probs=47.5
Q ss_pred CcEEEEEcCCC----eEEEEEccCCC-CCCCceecCCCCceeEEEecCCCcEEEEecC---CCeEEEEEcCCCceEEEEe
Q 043355 47 TKLLISSTSNQ----IFSWKTVPFNP-LATSTSDSIPEGPILSIRFSLDTKLIAIQRS---SSEIQFWIRETSEAFSHRC 118 (143)
Q Consensus 47 nk~v~avrsgg----v~gv~v~~~~p-~~~~~~frid~G~I~sIKFS~D~KiLAIQRs---~~sVEFvn~~~~~~~~q~c 118 (143)
++.+|+...++ ...+-+ .+. ...+..+.-.+++|.+.+||||++.||.-.. ...|-.++..++.......
T Consensus 166 ~~iafv~~~~~~~~~~~~l~~--~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~ 243 (435)
T PRK05137 166 TRIVYVAESGPKNKRIKRLAI--MDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN 243 (435)
T ss_pred CeEEEEEeeCCCCCcceEEEE--ECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec
Confidence 45555554444 344444 222 2223333335669999999999998887542 3578788887774422221
Q ss_pred cCCCCcEEEEEeccC
Q 043355 119 RSDSENILGFFWTDC 133 (143)
Q Consensus 119 K~k~~~IlGF~Wt~~ 133 (143)
....+.++-|-..
T Consensus 244 --~~g~~~~~~~SPD 256 (435)
T PRK05137 244 --FPGMTFAPRFSPD 256 (435)
T ss_pred --CCCcccCcEECCC
Confidence 1234556677644
No 26
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=87.90 E-value=3.1 Score=38.16 Aligned_cols=91 Identities=16% Similarity=0.230 Sum_probs=64.8
Q ss_pred CcceeEeCCCcEEEEEcCCCeEEEEEccCCCC-CCCceecC-CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEE
Q 043355 38 SRGLHYDDGTKLLISSTSNQIFSWKTVPFNPL-ATSTSDSI-PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFS 115 (143)
Q Consensus 38 ~~~vFyDDank~v~avrsggv~gv~v~~~~p~-~~~~~fri-d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~ 115 (143)
+-.+=|-. .+..++.-+|. +.+-. -+++ +.|.-.+- -+-=|++|..|||+|.||----+.+|-+++-.+|.++-
T Consensus 118 Vl~~~fsp-~g~~l~tGsGD-~TvR~--WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g 193 (480)
T KOG0271|consen 118 VLSVQFSP-TGSRLVTGSGD-TTVRL--WDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG 193 (480)
T ss_pred EEEEEecC-CCceEEecCCC-ceEEe--eccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccc
Confidence 34455655 34444443444 44444 3342 22222222 44479999999999999999999999999999999999
Q ss_pred EEecCCCCcEEEEEecc
Q 043355 116 HRCRSDSENILGFFWTD 132 (143)
Q Consensus 116 q~cK~k~~~IlGF~Wt~ 132 (143)
-.-+..+--|.+.-|-.
T Consensus 194 ~~l~gH~K~It~Lawep 210 (480)
T KOG0271|consen 194 RALRGHKKWITALAWEP 210 (480)
T ss_pred ccccCcccceeEEeecc
Confidence 99999999999999954
No 27
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=87.62 E-value=0.85 Score=39.93 Aligned_cols=42 Identities=26% Similarity=0.555 Sum_probs=36.1
Q ss_pred CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceE-EEEec
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAF-SHRCR 119 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~-~q~cK 119 (143)
..|||+++|||||+-+.|+---+-+|-.|--..++.| .-.|.
T Consensus 266 h~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~~~~~~~ 308 (334)
T KOG0278|consen 266 HFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTYGLWKCV 308 (334)
T ss_pred CCCceEEEEECCCCceeeccCCCceEEEEEecCCCchhhcccc
Confidence 5679999999999999999999999999998777666 44554
No 28
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=87.15 E-value=1.8 Score=37.86 Aligned_cols=39 Identities=23% Similarity=0.369 Sum_probs=33.4
Q ss_pred ceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEE-Eec
Q 043355 81 PILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSH-RCR 119 (143)
Q Consensus 81 ~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q-~cK 119 (143)
||+.|-||-|+|+||----++-||+.+.+||...-+ .|.
T Consensus 233 pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~ 272 (313)
T KOG1407|consen 233 PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCE 272 (313)
T ss_pred ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeecc
Confidence 999999999999999999999999999999843333 454
No 29
>PRK03629 tolB translocation protein TolB; Provisional
Probab=86.72 E-value=9.1 Score=33.39 Aligned_cols=62 Identities=11% Similarity=0.011 Sum_probs=37.9
Q ss_pred CCceeEEEecCCCcEEEEecC--C-CeEEEEEcCCCceEEEEecCCCCcEEEEEeccCCCceEEEEeC
Q 043355 79 EGPILSIRFSLDTKLIAIQRS--S-SEIQFWIRETSEAFSHRCRSDSENILGFFWTDCPLCDFVVVKN 143 (143)
Q Consensus 79 ~G~I~sIKFS~D~KiLAIQRs--~-~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~~cdivlVTn 143 (143)
+|.+.+.+||||++.||...+ . ..|=.++.+++.. .+... ....+..+.|.... =.|+++.|
T Consensus 242 ~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~-~~lt~-~~~~~~~~~wSPDG-~~I~f~s~ 306 (429)
T PRK03629 242 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTD-GRSNNTEPTWFPDS-QNLAYTSD 306 (429)
T ss_pred CCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEccC-CCCCcCceEECCCC-CEEEEEeC
Confidence 455567899999999987533 2 3465667766633 33322 23456778887654 14666543
No 30
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=86.71 E-value=11 Score=35.70 Aligned_cols=93 Identities=12% Similarity=0.312 Sum_probs=63.4
Q ss_pred CCcceeEeCCCcEEEEEcCCCeEE-EEEccCCC-CCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEc-CCCce
Q 043355 37 ESRGLHYDDGTKLLISSTSNQIFS-WKTVPFNP-LATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIR-ETSEA 113 (143)
Q Consensus 37 ~~~~vFyDDank~v~avrsggv~g-v~v~~~~p-~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~-~~~~~ 113 (143)
..-.+=||..+ ++++ |-++| |-| .+- ...-++.+.+.-|+..+|||||+-.|||--.++.|-..-. .+|..
T Consensus 409 ~~~~~~fhpsg--~va~--Gt~~G~w~V--~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~ 482 (626)
T KOG2106|consen 409 PAECADFHPSG--VVAV--GTATGRWFV--LDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRK 482 (626)
T ss_pred ceeEeeccCcc--eEEE--eeccceEEE--EecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcE
Confidence 34445566666 5555 22233 444 222 2233444457449999999999999999999999986666 77788
Q ss_pred EEE--EecCCCCcEEEEEeccCCCceEE
Q 043355 114 FSH--RCRSDSENILGFFWTDCPLCDFV 139 (143)
Q Consensus 114 ~~q--~cK~k~~~IlGF~Wt~~~~cdiv 139 (143)
|+. +|.. +.|.-.=|-..+ +++
T Consensus 483 y~r~~k~~g--s~ithLDwS~Ds--~~~ 506 (626)
T KOG2106|consen 483 YSRVGKCSG--SPITHLDWSSDS--QFL 506 (626)
T ss_pred EEEeeeecC--ceeEEeeecCCC--ceE
Confidence 887 5664 889999998887 554
No 31
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=86.64 E-value=16 Score=29.81 Aligned_cols=103 Identities=11% Similarity=0.196 Sum_probs=57.2
Q ss_pred CcceeEeCCCcEEEEEc--CCCeEEEEEccCC-CCCCCceec-CCC---C--ceeEEEecCCCcEEEEe-cCCCeEEEEE
Q 043355 38 SRGLHYDDGTKLLISST--SNQIFSWKTVPFN-PLATSTSDS-IPE---G--PILSIRFSLDTKLIAIQ-RSSSEIQFWI 107 (143)
Q Consensus 38 ~~~vFyDDank~v~avr--sggv~gv~v~~~~-p~~~~~~fr-id~---G--~I~sIKFS~D~KiLAIQ-Rs~~sVEFvn 107 (143)
...+-|+...+.++++. ++.+.-|.+...+ .-+....+. +.+ | ....|.||||+|.|.+. |.+++|-.+.
T Consensus 177 p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~ 256 (330)
T PRK11028 177 PRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFS 256 (330)
T ss_pred CceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEE
Confidence 34567777777777773 4666667773210 001111111 111 2 23479999999988876 8889999988
Q ss_pred cCCC-ce--EEEEecCCCCcEEEEEeccCCCceEEEEeC
Q 043355 108 RETS-EA--FSHRCRSDSENILGFFWTDCPLCDFVVVKN 143 (143)
Q Consensus 108 ~~~~-~~--~~q~cK~k~~~IlGF~Wt~~~~cdivlVTn 143 (143)
..+. .. +.+.-..+ ...-+|.|.... +.++|+|
T Consensus 257 i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg--~~l~va~ 292 (330)
T PRK11028 257 VSEDGSVLSFEGHQPTE-TQPRGFNIDHSG--KYLIAAG 292 (330)
T ss_pred EeCCCCeEEEeEEEecc-ccCCceEECCCC--CEEEEEE
Confidence 8432 22 22221111 123355666565 6666654
No 32
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=86.51 E-value=2.5 Score=41.89 Aligned_cols=56 Identities=21% Similarity=0.433 Sum_probs=43.6
Q ss_pred CCCceeEEEecCCCcEEEEecCCCeEEEEEcCC---CceE------------EE--EecCCCCcEEEEEeccC
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRET---SEAF------------SH--RCRSDSENILGFFWTDC 133 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~---~~~~------------~q--~cK~k~~~IlGF~Wt~~ 133 (143)
-+|.|.++|||||+++||.-=.++-|..|.+.. +..| .. .-+.+...|+=..|.-+
T Consensus 68 h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~ 140 (942)
T KOG0973|consen 68 HDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD 140 (942)
T ss_pred ccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC
Confidence 578999999999999999999999999999963 1222 12 22346778999999863
No 33
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=86.39 E-value=13 Score=28.41 Aligned_cols=71 Identities=15% Similarity=0.145 Sum_probs=39.2
Q ss_pred CcceeEeCCCcEEEEEcC-CC-eEEEEEccCCCCCCCceecCCCC-ceeEEEecCCCcEEEEecCC-CeEEEEEcCCCce
Q 043355 38 SRGLHYDDGTKLLISSTS-NQ-IFSWKTVPFNPLATSTSDSIPEG-PILSIRFSLDTKLIAIQRSS-SEIQFWIRETSEA 113 (143)
Q Consensus 38 ~~~vFyDDank~v~avrs-gg-v~gv~v~~~~p~~~~~~frid~G-~I~sIKFS~D~KiLAIQRs~-~sVEFvn~~~~~~ 113 (143)
...+-|+...+.+++..+ ++ +.-|.+ . .......++.+ .+.++.||||++++++-... ..+..++.+++..
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~--~---~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~ 149 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDDNLVTVIDI--E---TRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI 149 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCeEEEEEC--C---CCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE
Confidence 345566666666655532 23 333333 1 11111223333 57899999999999887654 3455566665533
No 34
>PTZ00420 coronin; Provisional
Probab=86.18 E-value=22 Score=33.25 Aligned_cols=71 Identities=10% Similarity=0.120 Sum_probs=45.1
Q ss_pred CcceeEeCCCcEEEEE-cC-CCeEEEEEccCCCCCCCceecC-CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCce
Q 043355 38 SRGLHYDDGTKLLISS-TS-NQIFSWKTVPFNPLATSTSDSI-PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEA 113 (143)
Q Consensus 38 ~~~vFyDDank~v~av-rs-ggv~gv~v~~~~p~~~~~~fri-d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~ 113 (143)
++.+=|......+++. -. +-+.=|.+ ... . ....+ ..++|.++.||||+++||.--.+..|-+++..++..
T Consensus 128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl--~tg-~--~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDI--ENE-K--RAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI 201 (568)
T ss_pred EEEEEECCCCCeEEEEEeCCCeEEEEEC--CCC-c--EEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE
Confidence 5555566555555443 22 33333554 211 1 12233 345899999999999999988889999999977743
No 35
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=85.55 E-value=18 Score=29.47 Aligned_cols=72 Identities=11% Similarity=0.050 Sum_probs=44.9
Q ss_pred CcceeEeCCCcEEEEEc--CCCeEEEEEccCCCCCCCceecCCC-CceeEEEecCCCcEE-EEecCCCeEEEEEcCC
Q 043355 38 SRGLHYDDGTKLLISST--SNQIFSWKTVPFNPLATSTSDSIPE-GPILSIRFSLDTKLI-AIQRSSSEIQFWIRET 110 (143)
Q Consensus 38 ~~~vFyDDank~v~avr--sggv~gv~v~~~~p~~~~~~frid~-G~I~sIKFS~D~KiL-AIQRs~~sVEFvn~~~ 110 (143)
...+-+|..++.+++.. ++.+.-|.+...+...+... .+.. ....++.|+||+|.| +.-.....|..+...+
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~-~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQ-IIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCcee-eccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 35677888888888774 45555566522111111111 1222 256789999999777 5666778899998865
No 36
>PRK01742 tolB translocation protein TolB; Provisional
Probab=83.80 E-value=12 Score=32.37 Aligned_cols=62 Identities=13% Similarity=0.058 Sum_probs=36.2
Q ss_pred CCCceeEEEecCCCcEEEEec-CCCeEEEE--EcCCCceEEEEecCCCCcEEEEEeccCCCceEEEEe
Q 043355 78 PEGPILSIRFSLDTKLIAIQR-SSSEIQFW--IRETSEAFSHRCRSDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQR-s~~sVEFv--n~~~~~~~~q~cK~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
-+|...+++||||++.||+-. .+..++++ +..++. ..+... ....+....|..+. -.|+++.
T Consensus 246 ~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~-~~~~~~~~~wSpDG-~~i~f~s 310 (429)
T PRK01742 246 FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTS-GAGNNTEPSWSPDG-QSILFTS 310 (429)
T ss_pred CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeecc-CCCCcCCEEECCCC-CEEEEEE
Confidence 345566899999999888754 34445544 444443 233333 33446677787653 1355554
No 37
>PRK01029 tolB translocation protein TolB; Provisional
Probab=83.39 E-value=23 Score=31.12 Aligned_cols=55 Identities=18% Similarity=0.070 Sum_probs=34.5
Q ss_pred CCCceeEEEecCCCcEEEEecCC---CeEEEEEcCCCceEEEEecCCCCcEEEEEeccCC
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSS---SEIQFWIRETSEAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~---~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
..+.+.+..+|||+|.||..+.. ..|-.++.+++..- +... ....+-...|..+.
T Consensus 325 ~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~-~~~~~~~p~wSpDG 382 (428)
T PRK01029 325 KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTT-SPENKESPSWAIDS 382 (428)
T ss_pred CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccC-CCCCccceEECCCC
Confidence 34577889999999988876543 45667777776432 2222 12235567787553
No 38
>PRK02889 tolB translocation protein TolB; Provisional
Probab=82.73 E-value=23 Score=30.82 Aligned_cols=83 Identities=12% Similarity=0.051 Sum_probs=47.5
Q ss_pred CcEEEEEcCCCeEEEEEccCCCCC-CCceecCCCCceeEEEecCCCcEEEEecC---CCeEEEEEcCCCceEEEEecCCC
Q 043355 47 TKLLISSTSNQIFSWKTVPFNPLA-TSTSDSIPEGPILSIRFSLDTKLIAIQRS---SSEIQFWIRETSEAFSHRCRSDS 122 (143)
Q Consensus 47 nk~v~avrsggv~gv~v~~~~p~~-~~~~frid~G~I~sIKFS~D~KiLAIQRs---~~sVEFvn~~~~~~~~q~cK~k~ 122 (143)
++..++...++...+-+ .+.+. .+..+.-.++++.+.+||||++.||.-.. ...|-.++..++..... ...+
T Consensus 164 ~~iayv~~~~~~~~L~~--~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~- 239 (427)
T PRK02889 164 TRIAYVIKTGNRYQLQI--SDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFK- 239 (427)
T ss_pred cEEEEEEccCCccEEEE--ECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCC-
Confidence 56666665555455544 22322 22223235668999999999998886542 23577778877754322 2111
Q ss_pred CcEEEEEeccC
Q 043355 123 ENILGFFWTDC 133 (143)
Q Consensus 123 ~~IlGF~Wt~~ 133 (143)
..+...-|...
T Consensus 240 g~~~~~~~SPD 250 (427)
T PRK02889 240 GSNSAPAWSPD 250 (427)
T ss_pred CCccceEECCC
Confidence 23456667654
No 39
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=82.64 E-value=22 Score=31.39 Aligned_cols=57 Identities=11% Similarity=0.306 Sum_probs=42.6
Q ss_pred CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEEE--ecCCCCcEEEEEeccCC
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHR--CRSDSENILGFFWTDCP 134 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~--cK~k~~~IlGF~Wt~~~ 134 (143)
-+.+|+++.||.++.+||+=-..++|=++....+.||.-. -......+-...|=--.
T Consensus 104 HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 104 HENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred cccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 5569999999999999999999999999999766666432 22334456666665444
No 40
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=81.51 E-value=25 Score=33.01 Aligned_cols=56 Identities=16% Similarity=0.398 Sum_probs=43.7
Q ss_pred CCCC-ceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEEEecCCCCcEEEEEeccCC
Q 043355 77 IPEG-PILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 77 id~G-~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
|..+ ||.+++||||+++||---.+..|-+++..++..|. |-.+..-|.-..|-.+-
T Consensus 449 ~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~--s~~~~~~Ifel~Wn~~G 505 (524)
T KOG0273|consen 449 MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK--SYQGTGGIFELCWNAAG 505 (524)
T ss_pred ccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeE--eecCCCeEEEEEEcCCC
Confidence 4566 99999999999999999999999999988775553 33444457777776554
No 41
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=80.27 E-value=30 Score=31.93 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=43.6
Q ss_pred eeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEEEecCCCC-cEEEEEeccC
Q 043355 82 ILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSE-NILGFFWTDC 133 (143)
Q Consensus 82 I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~-~IlGF~Wt~~ 133 (143)
.-.+-||||+.++|--=.+.+|-+|+..++..-.+-|-+.+. .|....|...
T Consensus 390 wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~s 442 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPS 442 (459)
T ss_pred cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCC
Confidence 445789999999999999999999999999666666666654 7999999764
No 42
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=80.12 E-value=10 Score=33.41 Aligned_cols=75 Identities=17% Similarity=0.148 Sum_probs=49.0
Q ss_pred ceeEeCCCcEEEEEcCCCe--------EEEEEccCCCCCCCceecCCCC-ceeEEEecCCCc-EEEEec-CCCeEEEEEc
Q 043355 40 GLHYDDGTKLLISSTSNQI--------FSWKTVPFNPLATSTSDSIPEG-PILSIRFSLDTK-LIAIQR-SSSEIQFWIR 108 (143)
Q Consensus 40 ~vFyDDank~v~avrsggv--------~gv~v~~~~p~~~~~~frid~G-~I~sIKFS~D~K-iLAIQR-s~~sVEFvn~ 108 (143)
.+=|+...+++|+.-.+++ ..|-+ .+........++.-| ++..|.||||+| .|-+-. .+.+|.++..
T Consensus 252 ~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V--iD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 252 QVAYHRARDRIYLLADQRAKWTHKTASRFLFV--VDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred eEEEcCCCCEEEEEecCCccccccCCCCEEEE--EECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence 3677877788887423433 33333 334333344455555 788999999999 666444 7888999998
Q ss_pred CCCceEEE
Q 043355 109 ETSEAFSH 116 (143)
Q Consensus 109 ~~~~~~~q 116 (143)
.++.....
T Consensus 330 ~t~k~i~~ 337 (352)
T TIGR02658 330 ETGKELSS 337 (352)
T ss_pred cCCeEEee
Confidence 88755444
No 43
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=79.99 E-value=8.2 Score=33.67 Aligned_cols=82 Identities=22% Similarity=0.242 Sum_probs=54.4
Q ss_pred EcCCCeEEEEEccC-----CCCCCCc--eecC------CCC-ceeEEEecCCCcEEEEecCCCeEEEEEcCCC-------
Q 043355 53 STSNQIFSWKTVPF-----NPLATST--SDSI------PEG-PILSIRFSLDTKLIAIQRSSSEIQFWIRETS------- 111 (143)
Q Consensus 53 vrsggv~gv~v~~~-----~p~~~~~--~fri------d~G-~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~------- 111 (143)
---+|+.+|++... +.+...- .+|+ -=| ||-|++||+|+.-+-+--=+.++-.+.++||
T Consensus 143 ea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk 222 (307)
T KOG0316|consen 143 EAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK 222 (307)
T ss_pred hhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc
Confidence 34577888887552 1233222 3332 125 9999999999987777777888999999875
Q ss_pred ----ceEEEEec---------CCCCcEEEEEeccCC
Q 043355 112 ----EAFSHRCR---------SDSENILGFFWTDCP 134 (143)
Q Consensus 112 ----~~~~q~cK---------~k~~~IlGF~Wt~~~ 134 (143)
.||...|. +++|.=.=|||---+
T Consensus 223 Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 223 GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred ccccceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence 78888766 233333458886554
No 44
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=79.61 E-value=8 Score=37.43 Aligned_cols=57 Identities=18% Similarity=0.324 Sum_probs=43.8
Q ss_pred CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCC--c---------------------eEEEEecCCCCcEEEEEeccCC
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETS--E---------------------AFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~--~---------------------~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
-+|-|-|+.||.|+.+||+---+++|.+|.+..- . ..--+-..|++.+++..+|..|
T Consensus 618 Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrN 697 (707)
T KOG0263|consen 618 HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRN 697 (707)
T ss_pred ccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccc
Confidence 5778999999999999999999999999998221 1 1112334566788888888887
No 45
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=79.11 E-value=5.6 Score=38.46 Aligned_cols=44 Identities=20% Similarity=0.340 Sum_probs=36.2
Q ss_pred ceecC---CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEE
Q 043355 73 TSDSI---PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSH 116 (143)
Q Consensus 73 ~~fri---d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q 116 (143)
.+.|+ -+|||.+++|||+++.||--=...-|-.|...++....+
T Consensus 568 ~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~ 614 (707)
T KOG0263|consen 568 NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQ 614 (707)
T ss_pred cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhh
Confidence 44564 788999999999999999999999999999977644433
No 46
>PRK00178 tolB translocation protein TolB; Provisional
Probab=78.97 E-value=28 Score=29.71 Aligned_cols=62 Identities=18% Similarity=0.055 Sum_probs=35.7
Q ss_pred CCCceeEEEecCCCcEEEEecC--C-CeEEEEEcCCCceEEEEecCCCCcEEEEEeccCCCceEEEEe
Q 043355 78 PEGPILSIRFSLDTKLIAIQRS--S-SEIQFWIRETSEAFSHRCRSDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs--~-~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
.+|.+.+..||||++.||+..+ . ..|-.++..++.. .+... .........|.... =.|++.+
T Consensus 241 ~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~-~~~~~~~~~~spDg-~~i~f~s 305 (430)
T PRK00178 241 FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL-SRVTN-HPAIDTEPFWGKDG-RTLYFTS 305 (430)
T ss_pred CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEccc-CCCCcCCeEECCCC-CEEEEEE
Confidence 4566678999999998886433 2 2555666666532 22222 22334566786543 1566654
No 47
>PRK05137 tolB translocation protein TolB; Provisional
Probab=78.91 E-value=25 Score=30.39 Aligned_cols=62 Identities=13% Similarity=0.048 Sum_probs=33.8
Q ss_pred CCCceeEEEecCCCcEEEEecC---CCeEEEEEcCCCceEEEEecCCCCcEEEEEeccCCCceEEEEe
Q 043355 78 PEGPILSIRFSLDTKLIAIQRS---SSEIQFWIRETSEAFSHRCRSDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs---~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
.+|.+.+.+||||++.||+..+ +..|=.++.+++... +... .........|.... =.|++.+
T Consensus 244 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~-~~~~~~~~~~spDG-~~i~f~s 308 (435)
T PRK05137 244 FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTD-SPAIDTSPSYSPDG-SQIVFES 308 (435)
T ss_pred CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-EccC-CCCccCceeEcCCC-CEEEEEE
Confidence 4677889999999998876554 233444455555332 2111 12223445665432 1455544
No 48
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=78.79 E-value=9.3 Score=35.50 Aligned_cols=38 Identities=18% Similarity=0.312 Sum_probs=33.1
Q ss_pred CCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEc
Q 043355 71 TSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIR 108 (143)
Q Consensus 71 ~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~ 108 (143)
+...|.--.|||++|+||-+|=+||+--...+|-.|..
T Consensus 381 ~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDL 418 (506)
T KOG0289|consen 381 NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDL 418 (506)
T ss_pred ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEe
Confidence 45667778899999999999999999999988888765
No 49
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=78.70 E-value=46 Score=29.32 Aligned_cols=56 Identities=21% Similarity=0.308 Sum_probs=38.2
Q ss_pred CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEE-EEecCCCCcEEEEEeccCC
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFS-HRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~-q~cK~k~~~IlGF~Wt~~~ 134 (143)
..|+|..|..||++|.||.--..-.+-.+...-...+. ..+. .+....-+.|..++
T Consensus 215 ~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 215 SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD-SKSPPKQMAWCGND 271 (410)
T ss_pred CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC-cCCCCcEEEEECCC
Confidence 56899999999999999998776666555543332222 2233 33456788888876
No 50
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=78.60 E-value=27 Score=26.60 Aligned_cols=58 Identities=21% Similarity=0.111 Sum_probs=38.6
Q ss_pred ceeEEEecCCCcEE-EEecCCCeEEEEEcCCCceEEEEecCCCCcEEEEEeccCCCceEEEEe
Q 043355 81 PILSIRFSLDTKLI-AIQRSSSEIQFWIRETSEAFSHRCRSDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 81 ~I~sIKFS~D~KiL-AIQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
.+.++.||||++.+ +.......|-+++..++.... ..... .....+.|.... +.++++
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~-~~~~~-~~~~~~~~~~~g--~~l~~~ 90 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIG-TLPSG-PDPELFALHPNG--KILYIA 90 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEE-eccCC-CCccEEEECCCC--CEEEEE
Confidence 46789999999876 677888999999988774432 22222 224456666555 566655
No 51
>PRK02889 tolB translocation protein TolB; Provisional
Probab=78.55 E-value=44 Score=29.03 Aligned_cols=62 Identities=15% Similarity=0.098 Sum_probs=32.9
Q ss_pred CCCceeEEEecCCCcEEEEecC-CCeEEEEEc--CCCceEEEEecCCCCcEEEEEeccCCCceEEEEe
Q 043355 78 PEGPILSIRFSLDTKLIAIQRS-SSEIQFWIR--ETSEAFSHRCRSDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs-~~sVEFvn~--~~~~~~~q~cK~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
.+|.+.+..||||++.||+..+ +...++... .++. ..+... .........|.... =.+++++
T Consensus 238 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~-~~~~~~~~~wSpDG-~~l~f~s 302 (427)
T PRK02889 238 FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQ-SSGIDTEPFFSPDG-RSIYFTS 302 (427)
T ss_pred CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCC-CCCCCcCeEEcCCC-CEEEEEe
Confidence 4577779999999998887543 333454433 3332 222211 12233445676543 1455544
No 52
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=78.50 E-value=7.9 Score=35.66 Aligned_cols=55 Identities=18% Similarity=0.257 Sum_probs=50.2
Q ss_pred CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEEEecCCCCcEEEEEeccC
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENILGFFWTDC 133 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~ 133 (143)
|++||....||.|.++||.-==+-.+..|+.+++ ...|+-+..++.+.+..|---
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~-~~~~~l~gH~~~v~~~~fhP~ 228 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC-NLLQTLRGHTSRVGAAVFHPV 228 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCc-ceeEEEeccccceeeEEEccC
Confidence 8899999999999999999998999999999999 778888999999999999543
No 53
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=78.44 E-value=10 Score=37.43 Aligned_cols=57 Identities=18% Similarity=0.341 Sum_probs=47.0
Q ss_pred ceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEEEecCCCCcEEEEEeccCCCceEEE
Q 043355 81 PILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENILGFFWTDCPLCDFVV 140 (143)
Q Consensus 81 ~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~~cdivl 140 (143)
.|-++.||||++++|.-=.+.-|-.||-.+|-.+. +--...+.+.|+.|+... .++|
T Consensus 352 ~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~v-TFteHts~Vt~v~f~~~g--~~ll 408 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFV-TFTEHTSGVTAVQFTARG--NVLL 408 (893)
T ss_pred ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEE-EeccCCCceEEEEEEecC--CEEE
Confidence 78899999999999999999999999987773332 223366789999999998 7765
No 54
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=78.12 E-value=2.1 Score=38.89 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=30.3
Q ss_pred CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCC
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETS 111 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~ 111 (143)
.+..+-+.+||||+++|+----+-=||.||+.+|
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~G 245 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTG 245 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccc
Confidence 4457889999999999999988999999999887
No 55
>PRK13616 lipoprotein LpqB; Provisional
Probab=76.80 E-value=57 Score=30.57 Aligned_cols=61 Identities=15% Similarity=0.225 Sum_probs=37.2
Q ss_pred CCceeEEEecCCCcEEEEecCCCeEEE--EEcCCCceEEE-----EecCCCCcEEEEEeccCCCceEEEEe
Q 043355 79 EGPILSIRFSLDTKLIAIQRSSSEIQF--WIRETSEAFSH-----RCRSDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 79 ~G~I~sIKFS~D~KiLAIQRs~~sVEF--vn~~~~~~~~q-----~cK~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
+|+|.++++|||++-||+--. ..|.. +.+.++.++.. --..-.......-|.... .+++.+
T Consensus 447 ~g~Issl~wSpDG~RiA~i~~-g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~--~L~V~~ 514 (591)
T PRK13616 447 PGPISELQLSRDGVRAAMIIG-GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGD--SLVVGR 514 (591)
T ss_pred CCCcCeEEECCCCCEEEEEEC-CEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCC--EEEEEe
Confidence 568999999999988887653 46655 24433322222 111122334667799998 777544
No 56
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=76.75 E-value=44 Score=28.08 Aligned_cols=104 Identities=19% Similarity=0.241 Sum_probs=57.8
Q ss_pred CcceeEeCCCcEEEEE--cCCCeEEEEEccC-CCCCCCceec-CC---CC--ceeEEEecCCCcEEEE-ecCCCeEEEEE
Q 043355 38 SRGLHYDDGTKLLISS--TSNQIFSWKTVPF-NPLATSTSDS-IP---EG--PILSIRFSLDTKLIAI-QRSSSEIQFWI 107 (143)
Q Consensus 38 ~~~vFyDDank~v~av--rsggv~gv~v~~~-~p~~~~~~fr-id---~G--~I~sIKFS~D~KiLAI-QRs~~sVEFvn 107 (143)
-+.+-|+...+.++++ .++.+.-+.+... +.-....... +. .| ....|++|||+|.|=+ -|.+.+|-.+.
T Consensus 194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD 273 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence 3456666666777776 3455666666311 1000111111 11 22 4679999999986554 89999999888
Q ss_pred c--CCC-ceEEEEecCCCCcEEEEEeccCCCceEEEEeC
Q 043355 108 R--ETS-EAFSHRCRSDSENILGFFWTDCPLCDFVVVKN 143 (143)
Q Consensus 108 ~--~~~-~~~~q~cK~k~~~IlGF~Wt~~~~cdivlVTn 143 (143)
. .++ .+..+........--+|...... +.|+|+|
T Consensus 274 ~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g--~~l~Va~ 310 (345)
T PF10282_consen 274 LDPATGTLTLVQTVPTGGKFPRHFAFSPDG--RYLYVAN 310 (345)
T ss_dssp ECTTTTTEEEEEEEEESSSSEEEEEE-TTS--SEEEEEE
T ss_pred EecCCCceEEEEEEeCCCCCccEEEEeCCC--CEEEEEe
Confidence 8 334 34444444334446666666666 6777764
No 57
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=75.98 E-value=56 Score=28.88 Aligned_cols=75 Identities=17% Similarity=0.233 Sum_probs=49.9
Q ss_pred CCCcceeEeCCCcEEEEEcCCC-eEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCce
Q 043355 36 PESRGLHYDDGTKLLISSTSNQ-IFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEA 113 (143)
Q Consensus 36 ~~~~~vFyDDank~v~avrsgg-v~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~ 113 (143)
..++.+=|.+....|+....++ +-=|.+ .. .+..-.+..-.++|.++.|++|+.+|+.-=.+..|-+++..++.-
T Consensus 247 ~~v~~~~f~p~g~~i~Sgs~D~tvriWd~--~~-~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 247 TYVTSVAFSPDGNLLVSGSDDGTVRIWDV--RT-GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSK 322 (456)
T ss_pred CceEEEEecCCCCEEEEecCCCcEEEEec--cC-CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCce
Confidence 3345555555557777775555 334666 22 222233334666999999999998888775599999999988863
No 58
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=75.46 E-value=43 Score=27.34 Aligned_cols=106 Identities=11% Similarity=0.094 Sum_probs=62.0
Q ss_pred cCCCCcceeEeCCCcEEEEE-cCCCeEEEEEccCCCCCCCceecC--CCCceeEEEecCCCcEEEEecC---CCeEEEE-
Q 043355 34 SIPESRGLHYDDGTKLLISS-TSNQIFSWKTVPFNPLATSTSDSI--PEGPILSIRFSLDTKLIAIQRS---SSEIQFW- 106 (143)
Q Consensus 34 ~~~~~~~vFyDDank~v~av-rsggv~gv~v~~~~p~~~~~~fri--d~G~I~sIKFS~D~KiLAIQRs---~~sVEFv- 106 (143)
....++.--||.. +.+.++ +.....-+..........+..... ..|+|.++++|||++-+|+..+ ...|..-
T Consensus 64 ~g~~l~~PS~d~~-g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~ 142 (253)
T PF10647_consen 64 TGGSLTRPSWDPD-GWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAG 142 (253)
T ss_pred cCCccccccccCC-CCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEE
Confidence 3345666777777 555555 444433333311223334444554 2339999999999999998882 3555543
Q ss_pred -Ec-CCC--ceEEE---EecCCCCcEEEEEeccCCCceEEEEe
Q 043355 107 -IR-ETS--EAFSH---RCRSDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 107 -n~-~~~--~~~~q---~cK~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
.+ ..+ ..... .-......+...-|.... .+++++
T Consensus 143 V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~--~L~V~~ 183 (253)
T PF10647_consen 143 VVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS--TLVVLG 183 (253)
T ss_pred EEeCCCCCcceeccceEecccccCcceeeeecCCC--EEEEEe
Confidence 34 233 11211 111234678999999999 888775
No 59
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=75.39 E-value=48 Score=27.85 Aligned_cols=97 Identities=16% Similarity=0.274 Sum_probs=60.8
Q ss_pred eeccCCCcceEE--EeeCC-----CceecCCCCcceeEeCCCcEEEEEcC--CCeEEEEEccCCC-CCCCceecCCCC-c
Q 043355 13 IGLSGSGALSHV--YIQYP-----PLRCSIPESRGLHYDDGTKLLISSTS--NQIFSWKTVPFNP-LATSTSDSIPEG-P 81 (143)
Q Consensus 13 ~~~~~~~~~~h~--~i~~~-----plR~~~~~~~~vFyDDank~v~avrs--ggv~gv~v~~~~p-~~~~~~frid~G-~ 81 (143)
..+...|.|... .++|+ |.|=..+..-.+-||...+.|+++.- +.+.-+.+..... -.+...+.+..| -
T Consensus 114 ~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~G 193 (345)
T PF10282_consen 114 FPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSG 193 (345)
T ss_dssp EEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSS
T ss_pred EEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCC
Confidence 344455666655 55554 34555566678999999999999843 5555555522221 111233456666 6
Q ss_pred eeEEEecCCCcEE-EEecCCCeEEEEEcC
Q 043355 82 ILSIRFSLDTKLI-AIQRSSSEIQFWIRE 109 (143)
Q Consensus 82 I~sIKFS~D~KiL-AIQRs~~sVEFvn~~ 109 (143)
.+-+.|+||+|++ .+..-+++|..++..
T Consensus 194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 7899999999876 566778889988886
No 60
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=75.36 E-value=46 Score=27.82 Aligned_cols=35 Identities=20% Similarity=0.101 Sum_probs=24.3
Q ss_pred CCCceeEEEecCCCcEEEEecC---CCeEEEEEcCCCc
Q 043355 78 PEGPILSIRFSLDTKLIAIQRS---SSEIQFWIRETSE 112 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs---~~sVEFvn~~~~~ 112 (143)
.+|.+.+++||||++.|++..+ ...|=.++..++.
T Consensus 232 ~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~ 269 (417)
T TIGR02800 232 FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ 269 (417)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC
Confidence 4566778999999998887644 2346566666653
No 61
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=74.60 E-value=30 Score=32.42 Aligned_cols=95 Identities=19% Similarity=0.282 Sum_probs=65.3
Q ss_pred CcceeEe-CCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEE
Q 043355 38 SRGLHYD-DGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSH 116 (143)
Q Consensus 38 ~~~vFyD-Dank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q 116 (143)
+|.|=+. |++-++-..-+|.+-=|.. +....-++--.+|||.++|.+-++.+|+----+.++-.++..+|+.+.|
T Consensus 238 VT~L~Wn~~G~~LatG~~~G~~riw~~----~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 238 VTSLDWNNDGTLLATGSEDGEARIWNK----DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred cceEEecCCCCeEEEeecCcEEEEEec----CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 5555443 3444444445555555665 2223344445899999999999999888888888888999999877777
Q ss_pred EecCCCCcEEEEEeccCCCceEE
Q 043355 117 RCRSDSENILGFFWTDCPLCDFV 139 (143)
Q Consensus 117 ~cK~k~~~IlGF~Wt~~~~cdiv 139 (143)
--- +++.=|-..|..+. +|+
T Consensus 314 f~~-~s~~~lDVdW~~~~--~F~ 333 (524)
T KOG0273|consen 314 FEF-HSAPALDVDWQSND--EFA 333 (524)
T ss_pred eee-ccCCccceEEecCc--eEe
Confidence 333 33444778999998 776
No 62
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=74.08 E-value=6.2 Score=22.84 Aligned_cols=24 Identities=25% Similarity=0.156 Sum_probs=18.1
Q ss_pred CCCceeEEEecCCCcEEEEecCCC
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSS 101 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~ 101 (143)
..+.-....||||+|.|+-.+...
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT
T ss_pred CCccccCEEEecCCCEEEEEecCC
Confidence 455677899999999999877643
No 63
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=74.05 E-value=30 Score=32.36 Aligned_cols=95 Identities=14% Similarity=0.203 Sum_probs=63.6
Q ss_pred ceeEeCCCcEEEEE-cCCCeEEEEEccCCCCCCCceecC----CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceE
Q 043355 40 GLHYDDGTKLLISS-TSNQIFSWKTVPFNPLATSTSDSI----PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAF 114 (143)
Q Consensus 40 ~vFyDDank~v~av-rsggv~gv~v~~~~p~~~~~~fri----d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~ 114 (143)
..|++++..+||+- |.-=.+.|.. ... +...+.. .+--+..-+.|+|+++||++=.+--|-.++-.|+ |+
T Consensus 263 a~f~p~G~~~i~~s~rrky~ysyDl--e~a--k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~-el 337 (514)
T KOG2055|consen 263 AEFAPNGHSVIFTSGRRKYLYSYDL--ETA--KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK-EL 337 (514)
T ss_pred eeecCCCceEEEecccceEEEEeec--ccc--ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh-hh
Confidence 47899888788776 4444455555 222 2222221 3335678888999999999999988887776665 56
Q ss_pred EEEecCCCCcEEEEEeccCCCceEEEEe
Q 043355 115 SHRCRSDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 115 ~q~cK~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
-++||.. ..+-+|.|.... ..+++.
T Consensus 338 i~s~Kie-G~v~~~~fsSds--k~l~~~ 362 (514)
T KOG2055|consen 338 ITSFKIE-GVVSDFTFSSDS--KELLAS 362 (514)
T ss_pred hheeeec-cEEeeEEEecCC--cEEEEE
Confidence 6777754 568888888665 555543
No 64
>PRK01742 tolB translocation protein TolB; Provisional
Probab=73.77 E-value=58 Score=28.25 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=26.6
Q ss_pred CCCceeEEEecCCCcEEEEecC---CCeEEEEEcCCCc
Q 043355 78 PEGPILSIRFSLDTKLIAIQRS---SSEIQFWIRETSE 112 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs---~~sVEFvn~~~~~ 112 (143)
.+++|.+.+||||++.||.-.. ...|-.++..++.
T Consensus 202 ~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~ 239 (429)
T PRK01742 202 SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA 239 (429)
T ss_pred CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc
Confidence 4568999999999998887543 2457778887764
No 65
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=72.80 E-value=21 Score=31.88 Aligned_cols=101 Identities=12% Similarity=0.253 Sum_probs=70.1
Q ss_pred CCCcceeEeCCCcEEEEEcC--CCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCce
Q 043355 36 PESRGLHYDDGTKLLISSTS--NQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEA 113 (143)
Q Consensus 36 ~~~~~vFyDDank~v~avrs--ggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~ 113 (143)
+.+..+=|...-+-+++-.| |-+--|.|.-.+.- .|..--.-+|||+++.+|-|+-.++.--.++++..+...+++
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~-~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q- 105 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL-VPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ- 105 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecCCcc-cchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-
Confidence 44777778875444443333 55666777222121 112222368899999999999999999999999999999994
Q ss_pred EEEEecCCCCcEEEEEeccCCCceEE
Q 043355 114 FSHRCRSDSENILGFFWTDCPLCDFV 139 (143)
Q Consensus 114 ~~q~cK~k~~~IlGF~Wt~~~~cdiv 139 (143)
.+.--...+.|-..+|+.+...+.|
T Consensus 106 -~~~v~~Hd~pvkt~~wv~~~~~~cl 130 (347)
T KOG0647|consen 106 -VSQVAAHDAPVKTCHWVPGMNYQCL 130 (347)
T ss_pred -eeeeeecccceeEEEEecCCCccee
Confidence 3444456678999999999864444
No 66
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=72.16 E-value=70 Score=28.27 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=36.2
Q ss_pred CceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEEEecCCCCcEEE
Q 043355 80 GPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENILG 127 (143)
Q Consensus 80 G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlG 127 (143)
..|.++.|+|++++|+--..+.+|-+|+.+++. ....-+..+..|.+
T Consensus 247 ~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~is~ 293 (456)
T KOG0266|consen 247 TYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDGISG 293 (456)
T ss_pred CceEEEEecCCCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCceEE
Confidence 389999999999999999999999999998842 33333334444554
No 67
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=72.11 E-value=8.5 Score=33.58 Aligned_cols=31 Identities=23% Similarity=0.211 Sum_probs=29.8
Q ss_pred CCCceeEEEecCCCcEEEEecCCCeEEEEEc
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSSEIQFWIR 108 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~ 108 (143)
-+|.|.+..+||++.+||.--+++.|..+.|
T Consensus 88 hkgsiyc~~ws~~geliatgsndk~ik~l~f 118 (350)
T KOG0641|consen 88 HKGSIYCTAWSPCGELIATGSNDKTIKVLPF 118 (350)
T ss_pred cCccEEEEEecCccCeEEecCCCceEEEEec
Confidence 7899999999999999999999999999988
No 68
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=71.58 E-value=12 Score=33.87 Aligned_cols=87 Identities=15% Similarity=0.090 Sum_probs=49.0
Q ss_pred CcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEc--C------
Q 043355 38 SRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIR--E------ 109 (143)
Q Consensus 38 ~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~--~------ 109 (143)
...+|+ +.++.+++++ .+.. .+-+.....-+++-.+|+.|-+|+|+.++|+- +..++=+.++ +
T Consensus 111 ~~~If~----G~LL~~~~~~--~i~~--yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~-t~~~i~il~~~~~~~~~~~ 181 (443)
T PF04053_consen 111 VEKIFG----GNLLGVKSSD--FICF--YDWETGKLIRRIDVSAVKYVIWSDDGELVALV-TKDSIYILKYNLEAVAAIP 181 (443)
T ss_dssp EEEEE-----SSSEEEEETT--EEEE--E-TTT--EEEEESS-E-EEEEE-TTSSEEEEE--S-SEEEEEE-HHHHHHBT
T ss_pred cceEEc----CcEEEEECCC--CEEE--EEhhHcceeeEEecCCCcEEEEECCCCEEEEE-eCCeEEEEEecchhccccc
Confidence 566777 6777777777 2333 44444556666766679999999999999997 5667777776 2
Q ss_pred -CCceEEEEecCC-CCcEEEEEeccC
Q 043355 110 -TSEAFSHRCRSD-SENILGFFWTDC 133 (143)
Q Consensus 110 -~~~~~~q~cK~k-~~~IlGF~Wt~~ 133 (143)
.|.+-.-..-.. .++|-...|..+
T Consensus 182 ~~g~e~~f~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 182 EEGVEDAFELIHEISERIKSGCWVED 207 (443)
T ss_dssp TTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred ccCchhceEEEEEecceeEEEEEEcC
Confidence 232211111223 678999999875
No 69
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=71.06 E-value=74 Score=28.13 Aligned_cols=65 Identities=14% Similarity=0.223 Sum_probs=37.5
Q ss_pred EeCCCcEEEEEcCCCeEEEEEccCCCCCCCceec--CCCC---ceeEEEecCCCcEEEEecCCCeEEEEEcC
Q 043355 43 YDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDS--IPEG---PILSIRFSLDTKLIAIQRSSSEIQFWIRE 109 (143)
Q Consensus 43 yDDank~v~avrsggv~gv~v~~~~p~~~~~~fr--id~G---~I~sIKFS~D~KiLAIQRs~~sVEFvn~~ 109 (143)
+-.+.+.+||-.++.-.=......+++ .++-+ +|+| .|++|++||.+++||.--=..++-++..+
T Consensus 22 whp~~g~ilAscg~Dk~vriw~~~~~~--s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~ 91 (312)
T KOG0645|consen 22 WHPGKGVILASCGTDKAVRIWSTSSGD--SWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE 91 (312)
T ss_pred eccCCceEEEeecCCceEEEEecCCCC--cEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC
Confidence 344446677775544222111112222 24545 4777 89999999999999976554444444443
No 70
>PRK04043 tolB translocation protein TolB; Provisional
Probab=69.88 E-value=79 Score=27.94 Aligned_cols=62 Identities=11% Similarity=0.132 Sum_probs=36.7
Q ss_pred CCCceeEEEecCCCcEEEEecC---CCeEEEEEcCCCceEEEEecCCCCcEEEEEeccC-CCceEEEEeC
Q 043355 78 PEGPILSIRFSLDTKLIAIQRS---SSEIQFWIRETSEAFSHRCRSDSENILGFFWTDC-PLCDFVVVKN 143 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs---~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~-~~cdivlVTn 143 (143)
.+|...+-.||||++-||+-.+ +..|-.++..++. ..+.+..... -..-.|... . .|+|++|
T Consensus 231 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~-~~~LT~~~~~-d~~p~~SPDG~--~I~F~Sd 296 (419)
T PRK04043 231 SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT-LTQITNYPGI-DVNGNFVEDDK--RIVFVSD 296 (419)
T ss_pred CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc-EEEcccCCCc-cCccEECCCCC--EEEEEEC
Confidence 5566677889999988877654 2355566665553 4444443322 223356654 4 6777764
No 71
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=69.85 E-value=87 Score=28.56 Aligned_cols=63 Identities=14% Similarity=0.229 Sum_probs=40.5
Q ss_pred CceecCCCCceeEEEecCCCcEEEEecCCCeEE-EEEcCCCceEEEEecCC-CCcEEEEEeccCC
Q 043355 72 STSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQ-FWIRETSEAFSHRCRSD-SENILGFFWTDCP 134 (143)
Q Consensus 72 ~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVE-Fvn~~~~~~~~q~cK~k-~~~IlGF~Wt~~~ 134 (143)
...+.--+|+|-+++||+||++||.--..-+|= .+..++|+.+.+-.|.- -.+|+...+-...
T Consensus 166 v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds 230 (391)
T KOG2110|consen 166 VNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS 230 (391)
T ss_pred eeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC
Confidence 344455899999999999999999987655553 33446665554433322 2456655554444
No 72
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=68.70 E-value=41 Score=32.16 Aligned_cols=104 Identities=13% Similarity=0.248 Sum_probs=79.2
Q ss_pred CCCCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCC-ceeEEEecCCCc-EEEEecCCCeEEEEEcCCCc
Q 043355 35 IPESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEG-PILSIRFSLDTK-LIAIQRSSSEIQFWIRETSE 112 (143)
Q Consensus 35 ~~~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~frid~G-~I~sIKFS~D~K-iLAIQRs~~sVEFvn~~~~~ 112 (143)
-+++++|-|...---|-+|+-||-.-+-- -.-....+.|.++.| -|+=+||||-.| +|.+--..-.|..|....-.
T Consensus 121 ~stvt~v~YN~~DeyiAsvs~gGdiiih~--~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s 198 (673)
T KOG4378|consen 121 QSTVTYVDYNNTDEYIASVSDGGDIIIHG--TKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS 198 (673)
T ss_pred cceeEEEEecCCcceeEEeccCCcEEEEe--cccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC
Confidence 47899999999999999998888544332 222445677888888 457999999986 55666667788888886666
Q ss_pred eEEEEecCCCCcEEEEEeccCCCceEEEEe
Q 043355 113 AFSHRCRSDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 113 ~~~q~cK~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
.+-+--+..+|.--|.++...| |.+||+
T Consensus 199 p~~~~~~~HsAP~~gicfspsn--e~l~vs 226 (673)
T KOG4378|consen 199 PIFHASEAHSAPCRGICFSPSN--EALLVS 226 (673)
T ss_pred cccchhhhccCCcCcceecCCc--cceEEE
Confidence 6777777778888888888888 888875
No 73
>PF07081 DUF1349: Protein of unknown function (DUF1349); InterPro: IPR009784 This family consists of several hypothetical bacterial proteins but contains one sequence (P40893 from SWISSPROT) from Saccharomyces cerevisiae. Members of this family are typically around 200 residues in length. The function of this family is unknown.; PDB: 3MEP_B 3O12_A.
Probab=67.97 E-value=11 Score=29.78 Aligned_cols=58 Identities=29% Similarity=0.375 Sum_probs=42.0
Q ss_pred eeE-eCCCcEEEEEcCCCeEEEEEccCCCCCCCceecC-CCCceeEEEecCCCcEEEEec
Q 043355 41 LHY-DDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSI-PEGPILSIRFSLDTKLIAIQR 98 (143)
Q Consensus 41 vFy-DDank~v~avrsggv~gv~v~~~~p~~~~~~fri-d~G~I~sIKFS~D~KiLAIQR 98 (143)
+=| .|+...+-+|.-++.-.|.+.+.....+.+.+|+ -+|..+.|.||.|++---.-|
T Consensus 83 iE~~~~g~~~l~sV~t~~~SDws~~~~~~~~~~~~lrv~R~g~~~~~~ys~DG~~w~~~R 142 (183)
T PF07081_consen 83 IEYSNDGTPRLSSVVTNGYSDWSLSPLPSDGQSVWLRVERRGDDLWIYYSADGKTWTLLR 142 (183)
T ss_dssp EEE-ETTCEEEEEEEEESSEEEEEEE--SBTTSEEEEEEEETTEEEEEEESSSS---EEE
T ss_pred EEEecCCCceEEEEeccCcccccccccCCCCCEEEEEEEEeCCEEEEEEEcCCCEEEEEE
Confidence 435 7788888888666888899866534667788998 888999999999997655544
No 74
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=67.26 E-value=17 Score=32.61 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=53.3
Q ss_pred CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEEEecCCCCcEEEEEeccCCCceEE
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENILGFFWTDCPLCDFV 139 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~~cdiv 139 (143)
.-|=|+.+.|||++..||--=++.+|-|+.-..+.+-.|+++...-..+...|+..+ ++|
T Consensus 205 ~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~--~vv 264 (361)
T KOG1523|consen 205 SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN--SVV 264 (361)
T ss_pred CCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC--cee
Confidence 345899999999999999999999999998877788899999888889999999988 654
No 75
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=66.76 E-value=75 Score=28.07 Aligned_cols=97 Identities=19% Similarity=0.201 Sum_probs=58.7
Q ss_pred CcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCC---ceE
Q 043355 38 SRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETS---EAF 114 (143)
Q Consensus 38 ~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~---~~~ 114 (143)
+--+-.|..+--+|++.+++-+-..- .-...+++.--..+|+=.-|-+|||++.+|+--...+|-|+..-+- .++
T Consensus 67 vdql~w~~~~~d~~atas~dk~ir~w--d~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~ 144 (313)
T KOG1407|consen 67 VDQLCWDPKHPDLFATASGDKTIRIW--DIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE 144 (313)
T ss_pred hhhheeCCCCCcceEEecCCceEEEE--EeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh
Confidence 44456667766677776766444222 2123334433336664448999999999999999999998877332 555
Q ss_pred EEEecCCCCcEEEEEeccCCCceEEEEeC
Q 043355 115 SHRCRSDSENILGFFWTDCPLCDFVVVKN 143 (143)
Q Consensus 115 ~q~cK~k~~~IlGF~Wt~~~~cdivlVTn 143 (143)
.|.|-.. .| .|-..| ++-|.||
T Consensus 145 ~~~~e~n--e~---~w~~~n--d~Fflt~ 166 (313)
T KOG1407|consen 145 QFKFEVN--EI---SWNNSN--DLFFLTN 166 (313)
T ss_pred cccceee--ee---eecCCC--CEEEEec
Confidence 5555421 12 233445 6666665
No 76
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=66.15 E-value=35 Score=29.65 Aligned_cols=42 Identities=21% Similarity=0.171 Sum_probs=28.0
Q ss_pred ceecCCCC-ceeEEEecCCCcEEEEe-cCCCeEEEEEcCCCceE
Q 043355 73 TSDSIPEG-PILSIRFSLDTKLIAIQ-RSSSEIQFWIRETSEAF 114 (143)
Q Consensus 73 ~~frid~G-~I~sIKFS~D~KiLAIQ-Rs~~sVEFvn~~~~~~~ 114 (143)
..-++.-| ..++|.+|+|+|+|++- +.+..|..++-++.+..
T Consensus 70 ~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v 113 (369)
T PF02239_consen 70 VVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV 113 (369)
T ss_dssp EEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE
T ss_pred EEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccce
Confidence 44445444 55799999999998876 67899999998776433
No 77
>PLN00181 protein SPA1-RELATED; Provisional
Probab=66.11 E-value=1.2e+02 Score=28.57 Aligned_cols=56 Identities=11% Similarity=0.148 Sum_probs=40.5
Q ss_pred CCceeEEEe-cCCCcEEEEecCCCeEEEEEcCCCceEEEEecCCCCcEEEEEeccCC
Q 043355 79 EGPILSIRF-SLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 79 ~G~I~sIKF-S~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
++.|.+++| ++++++||+--.+..|-+++..++....+.....+..|....|.+..
T Consensus 617 ~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~ 673 (793)
T PLN00181 617 KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSS 673 (793)
T ss_pred CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCC
Confidence 457889999 56789999999999999999866543223333455668888886544
No 78
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=65.93 E-value=10 Score=37.35 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=25.3
Q ss_pred CCceeEEEecCCCcEEEEecCCCeEEEEEc
Q 043355 79 EGPILSIRFSLDTKLIAIQRSSSEIQFWIR 108 (143)
Q Consensus 79 ~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~ 108 (143)
+-.|+++++|||+|+|||-==+++|-....
T Consensus 508 ~ddvL~v~~Spdgk~LaVsLLdnTVkVyfl 537 (888)
T KOG0306|consen 508 EDDVLCVSVSPDGKLLAVSLLDNTVKVYFL 537 (888)
T ss_pred cccEEEEEEcCCCcEEEEEeccCeEEEEEe
Confidence 347999999999999999998988875444
No 79
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=65.39 E-value=39 Score=29.61 Aligned_cols=60 Identities=17% Similarity=0.339 Sum_probs=45.5
Q ss_pred CCCceeEEEecCCCcEEEEecCCCeEEEEEcC----------CC-ceEEEEecCC---CCcEEEEEeccCCCceEE
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRE----------TS-EAFSHRCRSD---SENILGFFWTDCPLCDFV 139 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~----------~~-~~~~q~cK~k---~~~IlGF~Wt~~~~cdiv 139 (143)
|.-.|+++.|-|.+++-||--++++..+--.+ +. ..-+..||.. +..|++-.|..|- |++
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g--eli 104 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG--ELI 104 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc--CeE
Confidence 55599999999999999999999988765441 11 3335567754 5679999999887 654
No 80
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=64.61 E-value=83 Score=26.26 Aligned_cols=34 Identities=24% Similarity=0.154 Sum_probs=24.3
Q ss_pred CCCceeEEEecCCCcEEEEecCCC---eEEEEEcCCC
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSS---EIQFWIRETS 111 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~---sVEFvn~~~~ 111 (143)
..+.+.++.||||++.|+...... .|-.++..++
T Consensus 320 ~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 320 RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC
Confidence 334667889999999999876654 5656666554
No 81
>PRK04922 tolB translocation protein TolB; Provisional
Probab=64.57 E-value=95 Score=26.90 Aligned_cols=57 Identities=14% Similarity=-0.103 Sum_probs=33.5
Q ss_pred ceeEEEecCCCcEEEEecCC---CeEEEEEcCCCceEEEEecCCCCcEEEEEeccCCCceEEEE
Q 043355 81 PILSIRFSLDTKLIAIQRSS---SEIQFWIRETSEAFSHRCRSDSENILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 81 ~I~sIKFS~D~KiLAIQRs~---~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~~cdivlV 141 (143)
...++.||||++.||+...+ ..|..++..++..- +..... ......|..+. -.|++.
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~--~~~~p~~spdG-~~i~~~ 396 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGS--LDESPSFAPNG-SMVLYA 396 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCC--CCCCceECCCC-CEEEEE
Confidence 45578999999999986432 25778888776433 222221 22344666543 134444
No 82
>PRK03629 tolB translocation protein TolB; Provisional
Probab=64.47 E-value=72 Score=27.84 Aligned_cols=34 Identities=18% Similarity=0.054 Sum_probs=24.2
Q ss_pred CceeEEEecCCCcEEEEecCC---CeEEEEEcCCCce
Q 043355 80 GPILSIRFSLDTKLIAIQRSS---SEIQFWIRETSEA 113 (143)
Q Consensus 80 G~I~sIKFS~D~KiLAIQRs~---~sVEFvn~~~~~~ 113 (143)
+...+..||||++.||..... ..|..++.+++..
T Consensus 331 ~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~ 367 (429)
T PRK03629 331 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV 367 (429)
T ss_pred CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence 356688999999999886543 3466677776643
No 83
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=64.36 E-value=28 Score=29.52 Aligned_cols=55 Identities=16% Similarity=0.127 Sum_probs=34.4
Q ss_pred eEEEecCCCcEEEEecC--C---CeEEEEEcCCCceEEEEecCCCCcEEEEEeccCCCceEEEE
Q 043355 83 LSIRFSLDTKLIAIQRS--S---SEIQFWIRETSEAFSHRCRSDSENILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 83 ~sIKFS~D~KiLAIQRs--~---~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~~cdivlV 141 (143)
...++|||++.||+.-+ . ..+-+++.++|......-..- .--++.|.... +.++-
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~--~~~~y 186 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDG--KGFFY 186 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTS--SEEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCC--CEEEE
Confidence 37899999999998754 3 345566778885544332211 11238898886 55443
No 84
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=63.98 E-value=16 Score=17.71 Aligned_cols=29 Identities=34% Similarity=0.681 Sum_probs=21.4
Q ss_pred CCCceeEEEecCCCcEEEEecCCCeEEEE
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSSEIQFW 106 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~sVEFv 106 (143)
..++|.++.|+++.++++.--.+..+.++
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~ 39 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASASDDGTIKLW 39 (40)
T ss_pred cCCceeEEEECCCCCEEEEecCCCeEEEc
Confidence 45588999999988887776666666554
No 85
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=63.21 E-value=41 Score=33.24 Aligned_cols=70 Identities=13% Similarity=0.236 Sum_probs=48.4
Q ss_pred CCceec-C-CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCc-----------eEEE------EecCCCCcEEEEEec
Q 043355 71 TSTSDS-I-PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSE-----------AFSH------RCRSDSENILGFFWT 131 (143)
Q Consensus 71 ~~~~fr-i-d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~-----------~~~q------~cK~k~~~IlGF~Wt 131 (143)
||+..+ + =+.+|.++.||+++..+|+.-++.++.|...+... .+.. ........+..+.|.
T Consensus 416 PPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (928)
T PF04762_consen 416 PPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWL 495 (928)
T ss_pred chHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEe
Confidence 556555 4 56799999999999889999999999999963321 1111 011124557888898
Q ss_pred cCCCceEEEEe
Q 043355 132 DCPLCDFVVVK 142 (143)
Q Consensus 132 ~~~~cdivlVT 142 (143)
..+ .++++.
T Consensus 496 ~~~--~~~~~~ 504 (928)
T PF04762_consen 496 NDD--TLLVLS 504 (928)
T ss_pred CCC--EEEEEE
Confidence 888 666653
No 86
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=62.41 E-value=7.9 Score=37.84 Aligned_cols=39 Identities=18% Similarity=0.383 Sum_probs=33.1
Q ss_pred ceeEEEecCCCcEEEEecCCCeEEEEEcCCC---ceEE-EEec
Q 043355 81 PILSIRFSLDTKLIAIQRSSSEIQFWIRETS---EAFS-HRCR 119 (143)
Q Consensus 81 ~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~---~~~~-q~cK 119 (143)
-|..++||||++++|.--.+++|+.++..-| .+|. ++||
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~ 198 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGK 198 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeeccccccccccccccccc
Confidence 5789999999999999999999999999555 5666 6676
No 87
>PRK04792 tolB translocation protein TolB; Provisional
Probab=61.33 E-value=1.2e+02 Score=26.83 Aligned_cols=34 Identities=32% Similarity=0.181 Sum_probs=22.2
Q ss_pred CCceeEEEecCCCcEEEEecC-CC--eEEEEEcCCCc
Q 043355 79 EGPILSIRFSLDTKLIAIQRS-SS--EIQFWIRETSE 112 (143)
Q Consensus 79 ~G~I~sIKFS~D~KiLAIQRs-~~--sVEFvn~~~~~ 112 (143)
+|...+.+||||++.||+..+ +. .|=.++.+++.
T Consensus 261 ~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~ 297 (448)
T PRK04792 261 PGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA 297 (448)
T ss_pred CCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC
Confidence 455567899999998887533 22 35555666553
No 88
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=61.10 E-value=15 Score=33.23 Aligned_cols=59 Identities=19% Similarity=0.112 Sum_probs=39.5
Q ss_pred CCceecCCCCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEe
Q 043355 29 PPLRCSIPESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQ 97 (143)
Q Consensus 29 ~plR~~~~~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQ 97 (143)
.|+|++... ++++||+-.|.-..|--.-. -++.+.--++-.+-|.+|.||+|+|++|.-
T Consensus 333 ~p~RL~lsP---------~g~~lA~s~gs~l~~~~se~-g~~~~~~e~~h~~~Is~is~~~~g~~~atc 391 (420)
T KOG2096|consen 333 EPVRLELSP---------SGDSLAVSFGSDLKVFASED-GKDYPELEDIHSTTISSISYSSDGKYIATC 391 (420)
T ss_pred CceEEEeCC---------CCcEEEeecCCceEEEEccc-CccchhHHHhhcCceeeEEecCCCcEEeee
Confidence 466766543 67889997777666655222 233333333577899999999999999853
No 89
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=61.00 E-value=1e+02 Score=26.09 Aligned_cols=121 Identities=13% Similarity=0.093 Sum_probs=63.7
Q ss_pred CCcceEEEeeCC------CceecCCCCc-ceeEeCCCcEEEEEcCC-----------CeEEEEEccCCC-CCCCceecCC
Q 043355 18 SGALSHVYIQYP------PLRCSIPESR-GLHYDDGTKLLISSTSN-----------QIFSWKTVPFNP-LATSTSDSIP 78 (143)
Q Consensus 18 ~~~~~h~~i~~~------plR~~~~~~~-~vFyDDank~v~avrsg-----------gv~gv~v~~~~p-~~~~~~frid 78 (143)
|.-..+.+|.+. |..+..+.-+ -.|-+|++..+.+-... .+.-+++ .++ ++....|...
T Consensus 146 G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~--gt~~~~d~lvfe~~ 223 (414)
T PF02897_consen 146 GSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKL--GTPQSEDELVFEEP 223 (414)
T ss_dssp TSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEET--TS-GGG-EEEEC-T
T ss_pred CCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEEC--CCChHhCeeEEeec
Confidence 345678888877 3333333333 23444545544443222 1344444 434 4456788874
Q ss_pred CC-c-eeEEEecCCCcEEEEecCCCe--EE--EEEcCCC----ceEEEEecCCCCcEEEEEeccCCCceEEEEeC
Q 043355 79 EG-P-ILSIRFSLDTKLIAIQRSSSE--IQ--FWIRETS----EAFSHRCRSDSENILGFFWTDCPLCDFVVVKN 143 (143)
Q Consensus 79 ~G-~-I~sIKFS~D~KiLAIQRs~~s--VE--Fvn~~~~----~~~~q~cK~k~~~IlGF~Wt~~~~cdivlVTn 143 (143)
++ . ..++..|.|+|+|.|...+.. =| .+....+ .....-++.... +..+.-..+. .+.++||
T Consensus 224 ~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~-~~~~v~~~~~--~~yi~Tn 295 (414)
T PF02897_consen 224 DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDG-VEYYVDHHGD--RLYILTN 295 (414)
T ss_dssp TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS--EEEEEEETT--EEEEEE-
T ss_pred CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCc-eEEEEEccCC--EEEEeeC
Confidence 44 4 789999999999998766443 23 3333332 456666665544 3333333366 7888886
No 90
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=60.02 E-value=48 Score=32.76 Aligned_cols=72 Identities=19% Similarity=0.249 Sum_probs=46.8
Q ss_pred CCCcce-eEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceec-CCCCceeEEEecCCCcEEEEecCCCeEEEEEc
Q 043355 36 PESRGL-HYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDS-IPEGPILSIRFSLDTKLIAIQRSSSEIQFWIR 108 (143)
Q Consensus 36 ~~~~~v-FyDDank~v~avrsggv~gv~v~~~~p~~~~~~fr-id~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~ 108 (143)
+.+-++ |+=|.+..+++..+|.+.-+..-+ +++...+..- .=++-|.++++|||+.+||+--.+..|=++.+
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~-~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~ 149 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDP-DPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR 149 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccC-CCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec
Confidence 334333 555666677777777776665522 2322222222 14556899999999999999998888877776
No 91
>PRK00178 tolB translocation protein TolB; Provisional
Probab=59.73 E-value=1.1e+02 Score=26.09 Aligned_cols=61 Identities=23% Similarity=0.112 Sum_probs=35.9
Q ss_pred CCCceeEEEecCCCcEEEEecC---CCeEEEEEcCCCceEEEEecCCCCcEEEEEeccCCCceEEEE
Q 043355 78 PEGPILSIRFSLDTKLIAIQRS---SSEIQFWIRETSEAFSHRCRSDSENILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs---~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~~cdivlV 141 (143)
.++++.+.+||||++.||.-.. ...|-.++..++..... ... ...+..+.|.... =.+++.
T Consensus 197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~-~g~~~~~~~SpDG-~~la~~ 260 (430)
T PRK00178 197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNF-EGLNGAPAWSPDG-SKLAFV 260 (430)
T ss_pred CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCC-CCCcCCeEECCCC-CEEEEE
Confidence 4558899999999988876432 23566777777743222 111 1234457776543 145443
No 92
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=59.20 E-value=30 Score=29.23 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=34.6
Q ss_pred ceeEeCCCcEEEEEcCC------CeEEEEEccCCCCCCCceecC--CCCceeEEEecCCCcEEEEecCCC
Q 043355 40 GLHYDDGTKLLISSTSN------QIFSWKTVPFNPLATSTSDSI--PEGPILSIRFSLDTKLIAIQRSSS 101 (143)
Q Consensus 40 ~vFyDDank~v~avrsg------gv~gv~v~~~~p~~~~~~fri--d~G~I~sIKFS~D~KiLAIQRs~~ 101 (143)
-+.+|+.++.|+-.... .++.+.. . ... .--++ ..|.--++.||||++.++.+-+..
T Consensus 285 i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~--~-~~~--~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~~ 349 (353)
T PF00930_consen 285 ILGWDEDNNRIYFTANGDNPGERHLYRVSL--D-SGG--EPKCLTCEDGDHYSASFSPDGKYYVDTYSGP 349 (353)
T ss_dssp EEEEECTSSEEEEEESSGGTTSBEEEEEET--T-ETT--EEEESSTTSSTTEEEEE-TTSSEEEEEEESS
T ss_pred cceEcCCCCEEEEEecCCCCCceEEEEEEe--C-CCC--CeEeccCCCCCceEEEECCCCCEEEEEEcCC
Confidence 47899998888766333 2333333 2 011 22334 333225999999999999987754
No 93
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=58.50 E-value=25 Score=33.55 Aligned_cols=34 Identities=29% Similarity=0.349 Sum_probs=30.8
Q ss_pred CCCCceeEEEecCCCcEEEEecCCCeEEEEEcCC
Q 043355 77 IPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRET 110 (143)
Q Consensus 77 id~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~ 110 (143)
+.+|.|..+.||||+|.||.---+--+-.+||.+
T Consensus 288 ~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt 321 (636)
T KOG2394|consen 288 IGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDT 321 (636)
T ss_pred eccccccceeEcCCCceEEEEecCceEEEeeccH
Confidence 5888999999999999999988888899999865
No 94
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.29 E-value=34 Score=31.19 Aligned_cols=43 Identities=21% Similarity=0.354 Sum_probs=33.8
Q ss_pred CCCCCceecC-CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCC
Q 043355 68 PLATSTSDSI-PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETS 111 (143)
Q Consensus 68 p~~~~~~fri-d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~ 111 (143)
|....+-..+ -+++|.++-||||+|.||---.+ ..+.|..++|
T Consensus 174 Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g 217 (398)
T KOG0771|consen 174 PSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG 217 (398)
T ss_pred CcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC
Confidence 5544455555 77899999999999888877666 8889988776
No 95
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=58.01 E-value=85 Score=31.43 Aligned_cols=43 Identities=28% Similarity=0.332 Sum_probs=38.1
Q ss_pred CCCCceecCCCCceeEEEecCCC-cEEEEecCCCeEEEEEcCCC
Q 043355 69 LATSTSDSIPEGPILSIRFSLDT-KLIAIQRSSSEIQFWIRETS 111 (143)
Q Consensus 69 ~~~~~~frid~G~I~sIKFS~D~-KiLAIQRs~~sVEFvn~~~~ 111 (143)
++-.++|+.|.|+|.++-|.-|| -+||+-+++-.+-||+.+..
T Consensus 234 dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k 277 (910)
T KOG1539|consen 234 DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK 277 (910)
T ss_pred CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCC
Confidence 45667888899999999999998 68999999999999999765
No 96
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=57.74 E-value=1.6e+02 Score=27.23 Aligned_cols=61 Identities=15% Similarity=0.313 Sum_probs=40.3
Q ss_pred CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCC-ceEEEEecCCCCcEEEEEeccCCCceEEEEe
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETS-EAFSHRCRSDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~-~~~~q~cK~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
.-|-+.=.|||||+-+|=--|-+..--.++.... +.-.+.|-++ .+-+-+|..+- .++|++
T Consensus 237 glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg--rvqtacWspcG--sfLLf~ 298 (445)
T KOG2139|consen 237 GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG--RVQTACWSPCG--SFLLFA 298 (445)
T ss_pred CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC--ceeeeeecCCC--CEEEEE
Confidence 4557778999999966554555554444443222 4445566655 78899999987 777664
No 97
>PRK04922 tolB translocation protein TolB; Provisional
Probab=57.64 E-value=1.2e+02 Score=26.32 Aligned_cols=62 Identities=13% Similarity=-0.004 Sum_probs=34.3
Q ss_pred CCCceeEEEecCCCcEEEEec--CC-CeEEEEEcCCCceEEEEecCCCCcEEEEEeccCCCceEEEEe
Q 043355 78 PEGPILSIRFSLDTKLIAIQR--SS-SEIQFWIRETSEAFSHRCRSDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQR--s~-~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
.+|...+.+||||++.|++-. .. ..|=.++..++.. .+... .......+.|.... =.+++..
T Consensus 246 ~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~-~~~~~~~~~~spDG-~~l~f~s 310 (433)
T PRK04922 246 FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTN-HFGIDTEPTWAPDG-KSIYFTS 310 (433)
T ss_pred CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECcc-CCCCccceEECCCC-CEEEEEE
Confidence 356667899999999877643 32 3565666666643 22211 12233456676543 1455544
No 98
>PRK13614 lipoprotein LpqB; Provisional
Probab=57.38 E-value=98 Score=29.21 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=39.0
Q ss_pred CC-ceeEEEecCCCcEEEEec-CCC--eEEE--EEc-CCCceEEE----EecCCCCcEEEEEeccCCCceEEEEe
Q 043355 79 EG-PILSIRFSLDTKLIAIQR-SSS--EIQF--WIR-ETSEAFSH----RCRSDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 79 ~G-~I~sIKFS~D~KiLAIQR-s~~--sVEF--vn~-~~~~~~~q----~cK~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
+| +|.++|.|+|+=-+||.. .+- .|.. |.+ ..|..... .--. ....+..-|.+.. .+++.|
T Consensus 432 ~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~-~~~~~sl~W~~~~--sl~V~~ 503 (573)
T PRK13614 432 AGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAA-DSDADTGAWVGDS--TVVVTK 503 (573)
T ss_pred CCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceeccc-CCCcceeEEcCCC--EEEEEe
Confidence 45 699999999996666655 222 2554 566 44531222 1111 2568889999999 888775
No 99
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=56.72 E-value=29 Score=21.98 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=23.2
Q ss_pred ceeEEEecCCCcEEEEecCCCeEEEE
Q 043355 81 PILSIRFSLDTKLIAIQRSSSEIQFW 106 (143)
Q Consensus 81 ~I~sIKFS~D~KiLAIQRs~~sVEFv 106 (143)
+|..+.|||...+||+--...+|..-
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~ 38 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVY 38 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEE
Confidence 68999999999999999988888754
No 100
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=56.47 E-value=1e+02 Score=26.93 Aligned_cols=75 Identities=19% Similarity=0.316 Sum_probs=53.1
Q ss_pred CCCcceeEeCCCcEEEEE------------cCCCeEEEEEccCCCCCC-------C-------------ceecC------
Q 043355 36 PESRGLHYDDGTKLLISS------------TSNQIFSWKTVPFNPLAT-------S-------------TSDSI------ 77 (143)
Q Consensus 36 ~~~~~vFyDDank~v~av------------rsggv~gv~v~~~~p~~~-------~-------------~~fri------ 77 (143)
-+++.+=||+.-+++++= .+-|++.|.+-...|.-+ . .+++.
T Consensus 148 ~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~ 227 (282)
T PF15492_consen 148 HGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQ 227 (282)
T ss_pred CceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecccc
Confidence 378899999998877751 122889998866555111 1 12211
Q ss_pred CCCceeEEEecCCCcEEEEecCCCeEEEEEcCC
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRET 110 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~ 110 (143)
++--|..+..|||+++||.-..+-+|-++..++
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 122567899999999999999999999998865
No 101
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=56.07 E-value=30 Score=34.52 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=45.7
Q ss_pred CCCcceeEeCCCcEEEEEcCCCeEE---EEEccCCCCCCCceecC--CCCceeEEEecCCCcEEEEecC--CCeEEEEEc
Q 043355 36 PESRGLHYDDGTKLLISSTSNQIFS---WKTVPFNPLATSTSDSI--PEGPILSIRFSLDTKLIAIQRS--SSEIQFWIR 108 (143)
Q Consensus 36 ~~~~~vFyDDank~v~avrsggv~g---v~v~~~~p~~~~~~fri--d~G~I~sIKFS~D~KiLAIQRs--~~sVEFvn~ 108 (143)
..+-++---.+|++-..++||-.-. -+|..+.++.--..--+ .+.++.++.||+|+|++|.--. ...+..|..
T Consensus 30 ~kVlGlTv~~~~gLa~~p~Sgl~aYpAGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~l 109 (1080)
T KOG1408|consen 30 QKVLGLTVKNANGLASVPCSGLCAYPAGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSL 109 (1080)
T ss_pred HhhhceEeecCCcccccccccceeeccCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeee
Confidence 3444555556677777777776543 12223666433333322 6779999999999999998873 334555555
No 102
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=55.97 E-value=1.4e+02 Score=28.02 Aligned_cols=92 Identities=16% Similarity=0.244 Sum_probs=56.9
Q ss_pred CcceeEeCCCcEEEEE-cCCCeEEEEEccCCC-------------CCCCceec--CCCCceeEEEecCCCcEEEEecCCC
Q 043355 38 SRGLHYDDGTKLLISS-TSNQIFSWKTVPFNP-------------LATSTSDS--IPEGPILSIRFSLDTKLIAIQRSSS 101 (143)
Q Consensus 38 ~~~vFyDDank~v~av-rsggv~gv~v~~~~p-------------~~~~~~fr--id~G~I~sIKFS~D~KiLAIQRs~~ 101 (143)
++.|+.-+-++.+|.. ..+-+..|.|..... +..|...+ .--++|+++..|+|+|+||.-=-++
T Consensus 145 ~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~ 224 (479)
T KOG0299|consen 145 VTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDR 224 (479)
T ss_pred ceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCc
Confidence 4556666666677766 446666777743211 11122222 2234889999999999999999999
Q ss_pred eEEEEEcCCCceEEEEecCCCCcEEEEEe
Q 043355 102 EIQFWIRETSEAFSHRCRSDSENILGFFW 130 (143)
Q Consensus 102 sVEFvn~~~~~~~~q~cK~k~~~IlGF~W 130 (143)
-|.+|+..|.+...- .+.....|.|...
T Consensus 225 ~v~Iw~~~t~ehv~~-~~ghr~~V~~L~f 252 (479)
T KOG0299|consen 225 HVQIWDCDTLEHVKV-FKGHRGAVSSLAF 252 (479)
T ss_pred eEEEecCcccchhhc-ccccccceeeeee
Confidence 999999977632211 2334444555444
No 103
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=55.66 E-value=62 Score=29.48 Aligned_cols=62 Identities=13% Similarity=0.107 Sum_probs=39.0
Q ss_pred CcEEEEEcCCCeEEEEEccCCCCCCCceecC--CCCceeEEEecCCCcEEEEecCCCeEEEEEc
Q 043355 47 TKLLISSTSNQIFSWKTVPFNPLATSTSDSI--PEGPILSIRFSLDTKLIAIQRSSSEIQFWIR 108 (143)
Q Consensus 47 nk~v~avrsggv~gv~v~~~~p~~~~~~fri--d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~ 108 (143)
++.++|..|+.=|=+-|=.-.-...-..||= -.=.|.||.||||.++|+.-=+..+|-.+-.
T Consensus 184 ~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 184 DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKL 247 (391)
T ss_pred CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEe
Confidence 3445555453334444411111334455652 2226799999999999999999999987766
No 104
>PRK04792 tolB translocation protein TolB; Provisional
Probab=55.16 E-value=1.5e+02 Score=26.15 Aligned_cols=34 Identities=9% Similarity=-0.037 Sum_probs=21.9
Q ss_pred CCceeEEEecCCCcEEEEecCC---CeEEEEEcCCCc
Q 043355 79 EGPILSIRFSLDTKLIAIQRSS---SEIQFWIRETSE 112 (143)
Q Consensus 79 ~G~I~sIKFS~D~KiLAIQRs~---~sVEFvn~~~~~ 112 (143)
.+.+.+..||||++.|+.-... ..|-.++.+++.
T Consensus 305 ~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~ 341 (448)
T PRK04792 305 RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK 341 (448)
T ss_pred CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 3456788999999988876432 334445555553
No 105
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=54.90 E-value=1.1e+02 Score=30.83 Aligned_cols=84 Identities=14% Similarity=0.175 Sum_probs=56.7
Q ss_pred eeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecC--CCC--ceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEE
Q 043355 41 LHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSI--PEG--PILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSH 116 (143)
Q Consensus 41 vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~fri--d~G--~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q 116 (143)
+-+-.-++++.++..++ .|++ .+++.=...|.+ +.- .+..+-|||.||+||----+..|-.||.++ +
T Consensus 194 ~aW~Pk~g~la~~~~d~--~Vkv--y~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t-----~ 264 (933)
T KOG1274|consen 194 LAWHPKGGTLAVPPVDN--TVKV--YSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT-----H 264 (933)
T ss_pred eeecCCCCeEEeeccCC--eEEE--EccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc-----c
Confidence 34444556666665544 2444 445332233333 111 378899999999999999999999999988 3
Q ss_pred EecCCCCcEEEEEeccC
Q 043355 117 RCRSDSENILGFFWTDC 133 (143)
Q Consensus 117 ~cK~k~~~IlGF~Wt~~ 133 (143)
..+.+...|.+--|..+
T Consensus 265 ~~~~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 265 ERHEFKRAVCCEAWKPN 281 (933)
T ss_pred hhccccceeEEEecCCC
Confidence 33666778999999766
No 106
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.40 E-value=45 Score=34.62 Aligned_cols=57 Identities=18% Similarity=0.208 Sum_probs=40.5
Q ss_pred eeEEEecCCCcEEEEecCCCe-EEEEEcCCCceEEEEecCC--CCcEEEEEeccCCCceEEEE
Q 043355 82 ILSIRFSLDTKLIAIQRSSSE-IQFWIRETSEAFSHRCRSD--SENILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 82 I~sIKFS~D~KiLAIQRs~~s-VEFvn~~~~~~~~q~cK~k--~~~IlGF~Wt~~~~cdivlV 141 (143)
..+|-+||-+|-|+|-|++-+ |++..- -.+--.+.|..- ...|++..|+... |+|+|
T Consensus 201 ~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~--eflvv 260 (1405)
T KOG3630|consen 201 QTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ--EFLVV 260 (1405)
T ss_pred eeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce--eEEEE
Confidence 478999999999999999654 444211 112244455543 4579999999999 99876
No 107
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=54.06 E-value=17 Score=32.98 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=30.1
Q ss_pred CCCCceeEEEecCCCcEEEEecCCCeEEEEEcC
Q 043355 77 IPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRE 109 (143)
Q Consensus 77 id~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~ 109 (143)
.-++|.++.+||+|+.++|.---+.+|.++..|
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildve 142 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVE 142 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCcceEEEeehh
Confidence 478899999999999999999999999998874
No 108
>PRK10115 protease 2; Provisional
Probab=53.91 E-value=44 Score=31.58 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=35.1
Q ss_pred ceeEEEecCCCcEEEEecCCC-----eEEEEEcCCCceEEEEecCCCCcEEEEEeccCCCceEEEE
Q 043355 81 PILSIRFSLDTKLIAIQRSSS-----EIQFWIRETSEAFSHRCRSDSENILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 81 ~I~sIKFS~D~KiLAIQRs~~-----sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~~cdivlV 141 (143)
.+..+++|||+++||...+.. .+.+++..+|......-...+ .++.|+.++ +-+++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~---~~~~w~~D~--~~~~y 188 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE---PSFVWANDS--WTFYY 188 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc---eEEEEeeCC--CEEEE
Confidence 467899999999999998753 355666677642221111111 458898665 54444
No 109
>PF06523 DUF1106: Protein of unknown function (DUF1106); InterPro: IPR009490 This family consists of several hypothetical bacterial proteins found in Escherichia coli and Citrobacter rodentium. The function of this family is unknown.
Probab=53.22 E-value=17 Score=26.37 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=15.5
Q ss_pred eecCCCCce-eEEEecCCCcE
Q 043355 74 SDSIPEGPI-LSIRFSLDTKL 93 (143)
Q Consensus 74 ~frid~G~I-~sIKFS~D~Ki 93 (143)
++.-++|-| +|||.+|+++-
T Consensus 39 t~kcs~g~iylsi~v~pnn~~ 59 (91)
T PF06523_consen 39 TIKCSNGIIYLSIKVNPNNSN 59 (91)
T ss_pred EEEecCcEEEEEEEeCCCCcc
Confidence 445588977 99999999853
No 110
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=52.98 E-value=61 Score=29.07 Aligned_cols=59 Identities=12% Similarity=0.160 Sum_probs=36.3
Q ss_pred cceeEeCCCcEEEEE-cCCCeEE-EEEccCCCCCCCceecCCCCc----------eeEEEecCCCcEEEEe
Q 043355 39 RGLHYDDGTKLLISS-TSNQIFS-WKTVPFNPLATSTSDSIPEGP----------ILSIRFSLDTKLIAIQ 97 (143)
Q Consensus 39 ~~vFyDDank~v~av-rsggv~g-v~v~~~~p~~~~~~frid~G~----------I~sIKFS~D~KiLAIQ 97 (143)
+.|-.|+.++.||+. -+.|... ..+.-++--.+++..-...|+ ++++.|.||+++|.+=
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~ 162 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVP 162 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEe
Confidence 788899999999987 2233222 222112222233333335555 9999999999888763
No 111
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=52.92 E-value=1.7e+02 Score=28.53 Aligned_cols=107 Identities=16% Similarity=0.216 Sum_probs=68.9
Q ss_pred eEEEeeCCCceecCCC-CcceeEeCCCcEEEEE-cCCCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecC
Q 043355 22 SHVYIQYPPLRCSIPE-SRGLHYDDGTKLLISS-TSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRS 99 (143)
Q Consensus 22 ~h~~i~~~plR~~~~~-~~~vFyDDank~v~av-rsggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs 99 (143)
+|.|.+.+=+.-..+. +-.+=+- -+++||.. -+|.+++|.+ ... ++..+....-|+|=||.-+|-+.+|||-=.
T Consensus 55 ~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl--~~l-k~~~~~d~~gg~IWsiai~p~~~~l~Igcd 130 (691)
T KOG2048|consen 55 SNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDL--HTL-KQKYNIDSNGGAIWSIAINPENTILAIGCD 130 (691)
T ss_pred CCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEec--ccC-ceeEEecCCCcceeEEEeCCccceEEeecC
Confidence 4444444333332222 3333343 45677777 5688899998 522 233444557779999999999999999955
Q ss_pred CCeEEEEEcCCC-ceEEEEecCCCCcEEEEEecc
Q 043355 100 SSEIQFWIRETS-EAFSHRCRSDSENILGFFWTD 132 (143)
Q Consensus 100 ~~sVEFvn~~~~-~~~~q~cK~k~~~IlGF~Wt~ 132 (143)
+--+-++.-+++ .+|.-.--..+..||..-|=.
T Consensus 131 dGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~ 164 (691)
T KOG2048|consen 131 DGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP 164 (691)
T ss_pred CceEEEEecCCceEEEEeecccccceEEEEEecC
Confidence 555555555665 777777666678888888843
No 112
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=52.01 E-value=35 Score=32.47 Aligned_cols=63 Identities=19% Similarity=0.272 Sum_probs=40.7
Q ss_pred CCCCceeEEEecCCCcEEEEec-------CCCeEEEEEcCCCceEEEEe-cCCCCcEEEEEeccCCCceEEEEeC
Q 043355 77 IPEGPILSIRFSLDTKLIAIQR-------SSSEIQFWIRETSEAFSHRC-RSDSENILGFFWTDCPLCDFVVVKN 143 (143)
Q Consensus 77 id~G~I~sIKFS~D~KiLAIQR-------s~~sVEFvn~~~~~~~~q~c-K~k~~~IlGF~Wt~~~~cdivlVTn 143 (143)
-+-|.|.-.|||||++-+|+-| ....+=+++-|+|+.-.-+- -..-..+.| |+... +|++.||
T Consensus 76 S~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTyfGr~fT~VaG--~~~dg--~iiV~TD 146 (668)
T COG4946 76 SGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITYFGRRFTRVAG--WIPDG--EIIVSTD 146 (668)
T ss_pred cccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEEeccccceeec--cCCCC--CEEEEec
Confidence 3788999999999999999833 23455577777773221111 123344554 77777 7888775
No 113
>PF12142 PPO1_DWL: Polyphenol oxidase middle domain; InterPro: IPR022739 This domain is found in bacteria and eukaryotes and is approximately 50 amino acids in length. It is found in association with PF00264 from PFAM and PF12143 from PFAM. Most members are annotated as being polyphenol oxidases, and many are from plants or plastids. There is a conserved DWL sequence motif. ; GO: 0004097 catechol oxidase activity, 0055114 oxidation-reduction process; PDB: 1BT3_A 1BUG_B 1BT1_B 1BT2_B 2P3X_A.
Probab=51.96 E-value=12 Score=25.09 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=9.4
Q ss_pred ceeEeCCCcEEEEEcC
Q 043355 40 GLHYDDGTKLLISSTS 55 (143)
Q Consensus 40 ~vFyDDank~v~avrs 55 (143)
=+|||+ |+++..|+-
T Consensus 12 F~FYDe-n~~lVrv~v 26 (54)
T PF12142_consen 12 FLFYDE-NGQLVRVKV 26 (54)
T ss_dssp EEEE-T-TS-EEEEEG
T ss_pred eEEECC-CCCEEEEEh
Confidence 389987 888777744
No 114
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=50.48 E-value=1.7e+02 Score=25.44 Aligned_cols=84 Identities=12% Similarity=0.139 Sum_probs=42.7
Q ss_pred EEEcCCCeEEEEEccCCCCCCCceecCC-CCce-eEEEecCCCcEEEEecCCCeEEEEEcCCCceEEEEecCCCCcEEEE
Q 043355 51 ISSTSNQIFSWKTVPFNPLATSTSDSIP-EGPI-LSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENILGF 128 (143)
Q Consensus 51 ~avrsggv~gv~v~~~~p~~~~~~frid-~G~I-~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF 128 (143)
.+-|.++-..+. + .+.....-+|+ .|.+ ..++||||+|.+-+.=.+..|..+...+.....+ -+.+.+ -.|+
T Consensus 10 V~~~~~~~v~vi---D-~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~-i~~G~~-~~~i 83 (369)
T PF02239_consen 10 VVERGSGSVAVI---D-GATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVAT-IKVGGN-PRGI 83 (369)
T ss_dssp EEEGGGTEEEEE---E-TTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEE-EE-SSE-EEEE
T ss_pred EEecCCCEEEEE---E-CCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEE-EecCCC-cceE
Confidence 344656644442 2 22222344553 3444 5689999998776654467999999988753333 232322 3444
Q ss_pred EeccCCCceEEEEe
Q 043355 129 FWTDCPLCDFVVVK 142 (143)
Q Consensus 129 ~Wt~~~~cdivlVT 142 (143)
-..... ..++++
T Consensus 84 ~~s~DG--~~~~v~ 95 (369)
T PF02239_consen 84 AVSPDG--KYVYVA 95 (369)
T ss_dssp EE--TT--TEEEEE
T ss_pred EEcCCC--CEEEEE
Confidence 444444 444444
No 115
>cd07687 IgC_TCR_delta Immunoglobulin Constant domain. IgC_TCR_delta: Constant domain of the delta chain of delta/gamma T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=50.02 E-value=45 Score=24.11 Aligned_cols=44 Identities=20% Similarity=0.235 Sum_probs=31.8
Q ss_pred EEEEcCCCeEEEEEccCCCCCCCceecC-C----CCceeEEEecCCCcEEEE
Q 043355 50 LISSTSNQIFSWKTVPFNPLATSTSDSI-P----EGPILSIRFSLDTKLIAI 96 (143)
Q Consensus 50 v~avrsggv~gv~v~~~~p~~~~~~fri-d----~G~I~sIKFS~D~KiLAI 96 (143)
||++++|+-..--|+-+=| +++++.| + +.+ .+|-.||.||+-||
T Consensus 1 VfVMKngtnvACLvkdFYp--K~I~i~l~sski~e~~-~a~vVs~nGkysaV 49 (80)
T cd07687 1 VFVMKNGTNVACLVKEFYP--KSISINLSSSKIVEEP-PAIVVTPNGKYSAV 49 (80)
T ss_pred CEEEeCCceEEEEEehhcc--cceEEEecccceeccC-CceEEccCCcEEEE
Confidence 5888898888888855544 4467776 3 333 37888999999887
No 116
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=49.93 E-value=77 Score=29.78 Aligned_cols=68 Identities=18% Similarity=0.368 Sum_probs=43.7
Q ss_pred ecCCC-CcceeEeCCCcEEEEEcCC-CeEEEEEccCCCCCCCceec-CCCCce--eEEEecCCCcEEEEecCCCeEEE
Q 043355 33 CSIPE-SRGLHYDDGTKLLISSTSN-QIFSWKTVPFNPLATSTSDS-IPEGPI--LSIRFSLDTKLIAIQRSSSEIQF 105 (143)
Q Consensus 33 ~~~~~-~~~vFyDDank~v~avrsg-gv~gv~v~~~~p~~~~~~fr-id~G~I--~sIKFS~D~KiLAIQRs~~sVEF 105 (143)
|.+++ ++.+-|+.-.+.|++..+. .|.-|.+ ......-| +|+|-| .+|.-|+++.+||+--..-=|-+
T Consensus 341 ~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl-----~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNI 413 (514)
T KOG2055|consen 341 FKIEGVVSDFTFSSDSKELLASGGTGEVYVWNL-----RQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNI 413 (514)
T ss_pred eeeccEEeeEEEecCCcEEEEEcCCceEEEEec-----CCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEE
Confidence 56666 5555555555888888654 4444444 22223333 599977 89999999999998765544433
No 117
>PRK13449 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=49.28 E-value=56 Score=23.00 Aligned_cols=51 Identities=10% Similarity=0.135 Sum_probs=37.7
Q ss_pred ceecCCCCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCceeEEEe
Q 043355 31 LRCSIPESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRF 87 (143)
Q Consensus 31 lR~~~~~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I~sIKF 87 (143)
|++++-+-.++||++--++|..+..+|-+++- |+-.|+.-.+..|.+ .||.
T Consensus 4 l~l~IvtP~~~~~~~~v~~V~~p~~~G~~gIL-----p~H~p~it~L~~G~l-~i~~ 54 (88)
T PRK13449 4 LHFELVTPERLLRSGEVDMVVVPGTEGDFGVL-----AGHAPFMTTLREGEV-TVYS 54 (88)
T ss_pred eEEEEEcCCceEEccEEEEEEEeCCccCeEEc-----CCCcceEEEeeceEE-EEEE
Confidence 56666666789999999999999999988864 344556666777766 4454
No 118
>PLN00181 protein SPA1-RELATED; Provisional
Probab=48.60 E-value=2.4e+02 Score=26.59 Aligned_cols=91 Identities=16% Similarity=0.239 Sum_probs=54.4
Q ss_pred CcceeEeCC-CcEEEEEcCCCe-EEEEEccCCCCCCCceecCCCCceeEEEecC-CCcEEEEecCCCeEEEEEcCCCceE
Q 043355 38 SRGLHYDDG-TKLLISSTSNQI-FSWKTVPFNPLATSTSDSIPEGPILSIRFSL-DTKLIAIQRSSSEIQFWIRETSEAF 114 (143)
Q Consensus 38 ~~~vFyDDa-nk~v~avrsggv-~gv~v~~~~p~~~~~~frid~G~I~sIKFS~-D~KiLAIQRs~~sVEFvn~~~~~~~ 114 (143)
+..+-++.- +.+|.+--.+|. .=|.+ .+ ......+.-..++|.++.|+| |+.+|+.--.+..|-+++..++...
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~--~~-~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~ 611 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDV--AR-SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI 611 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEEC--CC-CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE
Confidence 445555543 334444433443 33444 11 111223334667999999997 7899999999999999999877443
Q ss_pred EEEecCCCCcEEEEEeccC
Q 043355 115 SHRCRSDSENILGFFWTDC 133 (143)
Q Consensus 115 ~q~cK~k~~~IlGF~Wt~~ 133 (143)
.+. +. ...|...-|...
T Consensus 612 ~~~-~~-~~~v~~v~~~~~ 628 (793)
T PLN00181 612 GTI-KT-KANICCVQFPSE 628 (793)
T ss_pred EEE-ec-CCCeEEEEEeCC
Confidence 222 22 245777777543
No 119
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=48.23 E-value=42 Score=34.21 Aligned_cols=78 Identities=21% Similarity=0.156 Sum_probs=58.6
Q ss_pred CCCCcceeEeCCCcEEEEEcC-CCeEEEEEccCC----CCCCCceec---CCCCceeEEEecCC----------------
Q 043355 35 IPESRGLHYDDGTKLLISSTS-NQIFSWKTVPFN----PLATSTSDS---IPEGPILSIRFSLD---------------- 90 (143)
Q Consensus 35 ~~~~~~vFyDDank~v~avrs-ggv~gv~v~~~~----p~~~~~~fr---id~G~I~sIKFS~D---------------- 90 (143)
.++++.+=|-+..+.|.+-++ |.++-|.=.+++ |-.+.+... ...|.|..|+++|-
T Consensus 303 ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~~v~ll~ 382 (1416)
T KOG3617|consen 303 GEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEEDVVLLG 382 (1416)
T ss_pred CCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhhheeeec
Confidence 456889999999999999855 556666654542 323344443 38899999999986
Q ss_pred ---------CcEEEEecCCCeEEEEEcCCCc
Q 043355 91 ---------TKLIAIQRSSSEIQFWIRETSE 112 (143)
Q Consensus 91 ---------~KiLAIQRs~~sVEFvn~~~~~ 112 (143)
+|..||||+++++...+..+|.
T Consensus 383 E~~l~~~h~~~~~A~q~ss~S~~L~hc~sGv 413 (1416)
T KOG3617|consen 383 ENSLTVKHRGKMAAIQTSSNSFTLLHCTSGV 413 (1416)
T ss_pred cCchHHHHhhhhHHhhhcCCceEEEeeccch
Confidence 6788999999999988886663
No 120
>PRK01029 tolB translocation protein TolB; Provisional
Probab=48.22 E-value=1.5e+02 Score=25.99 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=24.0
Q ss_pred CCceeEEEecCCCcEEEEecC---CCeEEEEEcCCCc
Q 043355 79 EGPILSIRFSLDTKLIAIQRS---SSEIQFWIRETSE 112 (143)
Q Consensus 79 ~G~I~sIKFS~D~KiLAIQRs---~~sVEFvn~~~~~ 112 (143)
++.+.+..||||++.|+...+ ...|-.++..++.
T Consensus 370 ~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 370 PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 346778999999998887543 4556667766653
No 121
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=47.35 E-value=8.1 Score=21.77 Aligned_cols=9 Identities=44% Similarity=0.667 Sum_probs=7.3
Q ss_pred EecCCCcEE
Q 043355 86 RFSLDTKLI 94 (143)
Q Consensus 86 KFS~D~KiL 94 (143)
-||||||+.
T Consensus 7 ~FSp~Grl~ 15 (23)
T PF10584_consen 7 TFSPDGRLF 15 (23)
T ss_dssp SBBTTSSBH
T ss_pred eECCCCeEE
Confidence 389999975
No 122
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=47.06 E-value=64 Score=32.71 Aligned_cols=76 Identities=20% Similarity=0.184 Sum_probs=62.1
Q ss_pred ceecCCC-----CcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceec--CCCCceeEEEecCCCcEEEEecCCCeE
Q 043355 31 LRCSIPE-----SRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDS--IPEGPILSIRFSLDTKLIAIQRSSSEI 103 (143)
Q Consensus 31 lR~~~~~-----~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~fr--id~G~I~sIKFS~D~KiLAIQRs~~sV 103 (143)
-|+++|. ++-.||-+-|...|....|.+.-+++-|. |++.++.+- ++.|-| +.-+|-|-|.++|--+..+|
T Consensus 59 ~~F~ip~f~dkl~s~~hf~~~~~~~f~~~~gDii~~~~dp~-p~e~~~eivG~v~nGIv-aa~wS~DE~~~cvvt~~r~i 136 (1243)
T COG5290 59 KRFEIPFFPDKLLSFKHFHVLTFEYFLIDEGDIIHLVNDPT-PAELEMEIVGKVSNGIV-AASWSADEKTWCVVTSTREI 136 (1243)
T ss_pred eEeccCCcchHhhhhhhhhhhheeeEEecCCcEEEEEcCCC-cccchhhhhccccCceE-EEeeccCCceEEEEEcCceE
Confidence 3666665 34578889999999999999999988544 777777765 578855 88999999999999999999
Q ss_pred EEEEc
Q 043355 104 QFWIR 108 (143)
Q Consensus 104 EFvn~ 108 (143)
=|+..
T Consensus 137 l~~~k 141 (1243)
T COG5290 137 LLFDK 141 (1243)
T ss_pred EEEec
Confidence 98876
No 123
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=46.81 E-value=52 Score=31.86 Aligned_cols=59 Identities=20% Similarity=0.195 Sum_probs=47.6
Q ss_pred ceecCCCCce-eEEEecCCCcEEEEecCCCeEEEEEcCCCceEEEEecCCCCcEEEEEec
Q 043355 73 TSDSIPEGPI-LSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENILGFFWT 131 (143)
Q Consensus 73 ~~frid~G~I-~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt 131 (143)
++|++..-++ .+..+-||+|+|||--.+.+|-....+++....+.-.+-.+.|..-+|-
T Consensus 55 wtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 55 WTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred EeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeecc
Confidence 4444422244 4999999999999999999999999999988777766777889999994
No 124
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.22 E-value=58 Score=30.16 Aligned_cols=77 Identities=21% Similarity=0.144 Sum_probs=49.8
Q ss_pred cCCCe----EEEEEccCCC-CCCCceecCCCC-ceeEEEecCCCc-EEEEecCCCeEEEEEcCCCceEEEEecCCCCcEE
Q 043355 54 TSNQI----FSWKTVPFNP-LATSTSDSIPEG-PILSIRFSLDTK-LIAIQRSSSEIQFWIRETSEAFSHRCRSDSENIL 126 (143)
Q Consensus 54 rsggv----~gv~v~~~~p-~~~~~~frid~G-~I~sIKFS~D~K-iLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~Il 126 (143)
.++.+ +||.+ .++ +=++..+-.-+| .|+++.|||.+. +|..--.++.|..+..++....++ |-.. ..|.
T Consensus 164 ks~qa~lpGvGv~~--l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-y~a~-~~~w 239 (463)
T KOG1645|consen 164 KSGQALLPGVGVQK--LESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-YIAY-NQIW 239 (463)
T ss_pred cchhhcCCccceEE--eccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-eecc-CCce
Confidence 34555 56555 333 334444434666 999999999998 666666699999999988744333 3333 4466
Q ss_pred EEEeccCC
Q 043355 127 GFFWTDCP 134 (143)
Q Consensus 127 GF~Wt~~~ 134 (143)
.-.|-.++
T Consensus 240 SC~wDlde 247 (463)
T KOG1645|consen 240 SCCWDLDE 247 (463)
T ss_pred eeeeccCC
Confidence 66775554
No 125
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=44.67 E-value=82 Score=31.23 Aligned_cols=121 Identities=22% Similarity=0.361 Sum_probs=83.3
Q ss_pred CeeeccCCCcceEEEeeCCCceec---------CCCCcceeEeCCCcEEEEE--cCCCeEEEEEccCCCCCCCceec--C
Q 043355 11 PSIGLSGSGALSHVYIQYPPLRCS---------IPESRGLHYDDGTKLLISS--TSNQIFSWKTVPFNPLATSTSDS--I 77 (143)
Q Consensus 11 ~~~~~~~~~~~~h~~i~~~plR~~---------~~~~~~vFyDDank~v~av--rsggv~gv~v~~~~p~~~~~~fr--i 77 (143)
.-+-|.|+|+.-.+|=--.|=|+- ...++.+.+|.=.-+=+|| ..|.+-=|-+.-.+..+ +.+.+ +
T Consensus 594 vAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e-~~~tPe~~ 672 (1012)
T KOG1445|consen 594 VAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE-NEMTPEKI 672 (1012)
T ss_pred EEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc-ccCCccee
Confidence 456678989998999877777763 3335556667555455565 34555567773333322 22222 2
Q ss_pred --CCC-ceeEEEecCCC-cEEEEecCCCeEEEEEcCCCceEEEEecCCCCcEEEEEeccC
Q 043355 78 --PEG-PILSIRFSLDT-KLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENILGFFWTDC 133 (143)
Q Consensus 78 --d~G-~I~sIKFS~D~-KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~ 133 (143)
-.| .|.+|||-|=. .+||+--.+.+||.|...+..+|+.-- .....|+||-|--+
T Consensus 673 lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~-gHtdqIf~~AWSpd 731 (1012)
T KOG1445|consen 673 LTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV-GHTDQIFGIAWSPD 731 (1012)
T ss_pred eecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec-cCcCceeEEEECCC
Confidence 455 89999999864 899999999999999998887765322 34567999999866
No 126
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=43.48 E-value=1.3e+02 Score=26.60 Aligned_cols=56 Identities=14% Similarity=0.174 Sum_probs=40.0
Q ss_pred ceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCC-ceEEEEecCCCCcEEEE
Q 043355 73 TSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETS-EAFSHRCRSDSENILGF 128 (143)
Q Consensus 73 ~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~-~~~~q~cK~k~~~IlGF 128 (143)
.+|+...|+|.|+-||+|+..|.+--.+.++..-+..+| ..-+-.||.-......|
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~F 64 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACF 64 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEE
Confidence 567777889999999999999999767778888888776 33344555333334333
No 127
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=43.14 E-value=1e+02 Score=30.21 Aligned_cols=61 Identities=23% Similarity=0.235 Sum_probs=38.2
Q ss_pred CceeEEEecCCCcEEEEecCCCeEEEEEcCCC------ceEEEEecCCC-CcEEEEEec-cCCCceEEEEe
Q 043355 80 GPILSIRFSLDTKLIAIQRSSSEIQFWIRETS------EAFSHRCRSDS-ENILGFFWT-DCPLCDFVVVK 142 (143)
Q Consensus 80 G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~------~~~~q~cK~k~-~~IlGF~Wt-~~~~cdivlVT 142 (143)
.=|-+|-|+||||..=|--=.-..-|.+-+.. ..-.+.-|.++ -+|.||... ..+ +-||||
T Consensus 452 ~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~--~~vLVT 520 (712)
T KOG0283|consen 452 DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDP--DEVLVT 520 (712)
T ss_pred hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCC--CeEEEe
Confidence 35679999999998777766666666665443 11111122222 269999888 456 666666
No 128
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=42.15 E-value=1.3e+02 Score=27.25 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=44.7
Q ss_pred eecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCc--eEEEEecCCCCcEEEEEeccC
Q 043355 74 SDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSE--AFSHRCRSDSENILGFFWTDC 133 (143)
Q Consensus 74 ~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~--~~~q~cK~k~~~IlGF~Wt~~ 133 (143)
.|.+-.+||.+-.|+.|...+|+-+.+++|.+-....+. +--++-+.....+.|.-|-..
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~ 66 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPK 66 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCC
Confidence 344456799999999999999999999999998885553 333345555556777777544
No 129
>COG3008 PqiB Paraquat-inducible protein B [General function prediction only]
Probab=41.52 E-value=60 Score=30.80 Aligned_cols=89 Identities=25% Similarity=0.321 Sum_probs=65.2
Q ss_pred eccCCCc-ceEEEeeCCCc-------eecCCCCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceec-CCCCceeE
Q 043355 14 GLSGSGA-LSHVYIQYPPL-------RCSIPESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDS-IPEGPILS 84 (143)
Q Consensus 14 ~~~~~~~-~~h~~i~~~pl-------R~~~~~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~fr-id~G~I~s 84 (143)
|.+|=|+ ||-+||...|= .+.+-+.-.+.+.|+.+..|..++...=++.+ ..|+-|| +.=|+|.+
T Consensus 119 GiSGLdtLlSG~YI~lqPG~~~~~~d~F~ald~pP~~~~~~~gL~i~L~a~dlGsL~~------GspVyfr~i~VGqV~s 192 (553)
T COG3008 119 GISGLDTLLSGNYIGLQPGKKGEAEDHFTALDTPPIASLDAGGLRIHLDAKDLGSLNV------GSPVYFRKIPVGQVES 192 (553)
T ss_pred cccccchhhcCceEEecCCCCCCccceeeeccCCCCCCCCCCCeEEEEecCccCCcCC------CCeeEEeceeeeeEEE
Confidence 4445455 48899998876 45555566778889999988887776555555 3457788 79999999
Q ss_pred EEecCCCcEEEEecC---------CCeEEEEEc
Q 043355 85 IRFSLDTKLIAIQRS---------SSEIQFWIR 108 (143)
Q Consensus 85 IKFS~D~KiLAIQRs---------~~sVEFvn~ 108 (143)
-.|-+|+|-+-||=- .+...|||.
T Consensus 193 y~~d~d~~~V~i~vfI~~py~~lV~~~sRFWn~ 225 (553)
T COG3008 193 YQFDPDKQGVTIQVFIEAPYDRLVKKDSRFWNV 225 (553)
T ss_pred EEEcCCCCeEEEEEEecChhhhhhccCceeeec
Confidence 999999998888732 445556665
No 130
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=40.55 E-value=1.2e+02 Score=29.18 Aligned_cols=53 Identities=13% Similarity=0.189 Sum_probs=38.7
Q ss_pred CCCeEEEEEccCCCCCCCce-ec-CCCC-ceeEEEecCCCcEEEEecCCCeEEEEEc
Q 043355 55 SNQIFSWKTVPFNPLATSTS-DS-IPEG-PILSIRFSLDTKLIAIQRSSSEIQFWIR 108 (143)
Q Consensus 55 sggv~gv~v~~~~p~~~~~~-fr-id~G-~I~sIKFS~D~KiLAIQRs~~sVEFvn~ 108 (143)
.|++-=|.++..+ ++.|++ .. +.++ -|++.|++||++-|-|---..+|-+|..
T Consensus 439 kgcVKVWdis~pg-~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 439 KGCVKVWDISQPG-NKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred CCeEEEeeccCCC-CCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 3455557773321 444443 33 4666 8999999999999999988999999998
No 131
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=40.33 E-value=1.3e+02 Score=27.10 Aligned_cols=38 Identities=13% Similarity=0.234 Sum_probs=31.4
Q ss_pred CCceec--CCCCceeEEEecCCCcEEEEecCCCeEEEEEc
Q 043355 71 TSTSDS--IPEGPILSIRFSLDTKLIAIQRSSSEIQFWIR 108 (143)
Q Consensus 71 ~~~~fr--id~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~ 108 (143)
+..-+| .|+-.|.+|.||||...||+--...+|-+...
T Consensus 216 ~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 216 LLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSL 255 (346)
T ss_pred EeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence 334455 36778999999999999999999999987777
No 132
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=39.74 E-value=1.5e+02 Score=26.33 Aligned_cols=73 Identities=12% Similarity=0.237 Sum_probs=49.7
Q ss_pred cCCCCcceeEeCCCcEEEEE-cCCCeEEEEEccCCCCCCCceecC--CCCceeEEEecCCC--cEEEEecCCCeEEEEEc
Q 043355 34 SIPESRGLHYDDGTKLLISS-TSNQIFSWKTVPFNPLATSTSDSI--PEGPILSIRFSLDT--KLIAIQRSSSEIQFWIR 108 (143)
Q Consensus 34 ~~~~~~~vFyDDank~v~av-rsggv~gv~v~~~~p~~~~~~fri--d~G~I~sIKFS~D~--KiLAIQRs~~sVEFvn~ 108 (143)
+..++..|=|+--|+||++- |..-+.=|.+ .+... ...-- .++=|.+++|||.. =+|+=---+++|-.+|.
T Consensus 104 H~~dVlsva~s~dn~qivSGSrDkTiklwnt--~g~ck--~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl 179 (315)
T KOG0279|consen 104 HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNT--LGVCK--YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNL 179 (315)
T ss_pred cCCceEEEEecCCCceeecCCCcceeeeeee--cccEE--EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEcc
Confidence 45568889999999999987 4455555777 32221 22221 26689999999994 45544444899999998
Q ss_pred CC
Q 043355 109 ET 110 (143)
Q Consensus 109 ~~ 110 (143)
.+
T Consensus 180 ~~ 181 (315)
T KOG0279|consen 180 RN 181 (315)
T ss_pred CC
Confidence 55
No 133
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=39.31 E-value=2.4e+02 Score=25.90 Aligned_cols=57 Identities=23% Similarity=0.358 Sum_probs=35.5
Q ss_pred EEEEE-cCCCeEEEEEccCCCCCCCceecCCCC--ceeEEEecCCC-cEEEEecCCCeEEEEEcCC
Q 043355 49 LLISS-TSNQIFSWKTVPFNPLATSTSDSIPEG--PILSIRFSLDT-KLIAIQRSSSEIQFWIRET 110 (143)
Q Consensus 49 ~v~av-rsggv~gv~v~~~~p~~~~~~frid~G--~I~sIKFS~D~-KiLAIQRs~~sVEFvn~~~ 110 (143)
++++. ..+-+.-|.. .-|+ +.-.||+| ++.+|+.|||+ .||-.--=...|..+...|
T Consensus 63 ilC~~yk~~~vqvwsl--~Qpe---w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t 123 (447)
T KOG4497|consen 63 ILCVAYKDPKVQVWSL--VQPE---WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNT 123 (447)
T ss_pred eeeeeeccceEEEEEe--ecce---eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecc
Confidence 34444 3346666766 3333 67778888 78999999999 5554433344455555543
No 134
>PRK13451 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=39.20 E-value=1.1e+02 Score=22.06 Aligned_cols=49 Identities=14% Similarity=0.218 Sum_probs=33.8
Q ss_pred eecCCCCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCceeEEE
Q 043355 32 RCSIPESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPILSIR 86 (143)
Q Consensus 32 R~~~~~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I~sIK 86 (143)
++++=+-.++||+.--.+|..+..+|-+||- |.-.|+--.+..|.+ .|+
T Consensus 2 ~l~IvtP~~~~~~~~v~~V~~pt~~G~~GIL-----p~H~p~it~L~~G~l-~i~ 50 (101)
T PRK13451 2 KVKIVTPYGIVYDRESDFVSFRTVEGEMGIL-----PRRAPIIAKLSVCDV-KIK 50 (101)
T ss_pred EEEEEcCCceEEeceeEEEEEEcCccCeEEc-----CCCcceEEEecceEE-EEE
Confidence 4445555678999988889999888888864 333455555677755 344
No 135
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=39.04 E-value=1.1e+02 Score=27.15 Aligned_cols=56 Identities=16% Similarity=0.252 Sum_probs=36.9
Q ss_pred ecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcC-CCceEEEEecC------CCCcEEEEEec
Q 043355 75 DSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRE-TSEAFSHRCRS------DSENILGFFWT 131 (143)
Q Consensus 75 frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~-~~~~~~q~cK~------k~~~IlGF~Wt 131 (143)
..+++|+|.++|.| |=..+||-..+-++=++++- +...|....+. +++.|..++|.
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~ 144 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFS 144 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEE
Confidence 33578999999999 99999999999999999983 33555544443 45667777776
No 136
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=38.48 E-value=60 Score=28.45 Aligned_cols=34 Identities=15% Similarity=0.408 Sum_probs=31.2
Q ss_pred CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCC
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETS 111 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~ 111 (143)
.+|+|+++||--|+++.-.-=++++|..||-..|
T Consensus 16 ~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg 49 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG 49 (307)
T ss_pred cccceEEEEEccCCCEEEEcCCCceEEeeccccc
Confidence 6789999999999999999999999999998554
No 137
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=38.38 E-value=1.1e+02 Score=29.34 Aligned_cols=79 Identities=14% Similarity=0.148 Sum_probs=50.9
Q ss_pred ceecCCCCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCC
Q 043355 31 LRCSIPESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRET 110 (143)
Q Consensus 31 lR~~~~~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~ 110 (143)
+.+....+++.+|-.--+.|-+|-.+|..-|== +.-.+.--.++-==|-.+++-+|||+|+|++-=-+-=|..|.|+.
T Consensus 286 w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~--fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e 363 (636)
T KOG2394|consen 286 WHIGEGSINEFAFSPDGKYLATVSQDGFLRIFD--FDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE 363 (636)
T ss_pred eEeccccccceeEcCCCceEEEEecCceEEEee--ccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc
Confidence 334444578888877555666665666544322 211111111111346789999999999999999999999998866
Q ss_pred C
Q 043355 111 S 111 (143)
Q Consensus 111 ~ 111 (143)
.
T Consensus 364 r 364 (636)
T KOG2394|consen 364 R 364 (636)
T ss_pred c
Confidence 5
No 138
>PF15043 CNRIP1: CB1 cannabinoid receptor-interacting protein 1
Probab=37.09 E-value=2.2e+02 Score=22.95 Aligned_cols=76 Identities=9% Similarity=0.013 Sum_probs=48.5
Q ss_pred CeEEEEEccC-CCCCCCceecCCCC---ceeEEEecCCCcE--EEEecCCCeEEEEEcCC-CceEEEEecCCCCcEEEEE
Q 043355 57 QIFSWKTVPF-NPLATSTSDSIPEG---PILSIRFSLDTKL--IAIQRSSSEIQFWIRET-SEAFSHRCRSDSENILGFF 129 (143)
Q Consensus 57 gv~gv~v~~~-~p~~~~~~frid~G---~I~sIKFS~D~Ki--LAIQRs~~sVEFvn~~~-~~~~~q~cK~k~~~IlGF~ 129 (143)
+++-+.++.+ -|++.|+-|.+|-. +-+.|||+-|.|+ =-.-|-+..++.++... ..+..+.+|...+-++.-.
T Consensus 6 ~~f~vslslk~~pn~~PVffKvDG~RF~q~RTiKl~tdskYkv~V~~kP~~~~~~~~igg~~~~l~~ks~d~~~~vYs~~ 85 (161)
T PF15043_consen 6 GLFRVSLSLKIQPNDGPVFFKVDGQRFGQNRTIKLLTDSKYKVDVTIKPPTVETSLSIGGVSLPLEEKSRDEQSVVYSGQ 85 (161)
T ss_pred ceEEEEEEEEeCCCCCcEEEEecccccCCceEEEEecCCEEEEEEEEcCCcceeeeEecceeeceeecccCCCeeEEEEE
Confidence 4445555444 46889999999622 6699999999854 33344455555555532 2566667776666677777
Q ss_pred ecc
Q 043355 130 WTD 132 (143)
Q Consensus 130 Wt~ 132 (143)
|-.
T Consensus 86 ~~T 88 (161)
T PF15043_consen 86 YDT 88 (161)
T ss_pred eec
Confidence 754
No 139
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=36.99 E-value=1.9e+02 Score=29.34 Aligned_cols=74 Identities=27% Similarity=0.411 Sum_probs=52.6
Q ss_pred CCCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCC-----ceEEEEec----------
Q 043355 55 SNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETS-----EAFSHRCR---------- 119 (143)
Q Consensus 55 sggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~-----~~~~q~cK---------- 119 (143)
.+++..|+- + -+++|....--+|-|-+|++|.|++++|.==.++++-.|..++. +-|.++.+
T Consensus 154 ~~~iivW~~--~-~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~ 230 (967)
T KOG0974|consen 154 FGEIIVWKP--H-EDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNR 230 (967)
T ss_pred cccEEEEec--c-ccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccce
Confidence 456666766 3 33344422239999999999999999999999999999999764 44444433
Q ss_pred --CCCCcEEEEEec
Q 043355 120 --SDSENILGFFWT 131 (143)
Q Consensus 120 --~k~~~IlGF~Wt 131 (143)
..++.-+.++|.
T Consensus 231 i~t~gedctcrvW~ 244 (967)
T KOG0974|consen 231 IITVGEDCTCRVWG 244 (967)
T ss_pred eEEeccceEEEEEe
Confidence 335667788883
No 140
>PF01419 Jacalin: Jacalin-like lectin domain; InterPro: IPR001229 This entry represents a mannose-binding lectin domain with a beta-prism fold consisting of three 4-stranded beta-sheets, with an internal pseudo 3-fold symmetry. Some lectins in this group stimulate distinct T- and B- cell functions, such as Jacalin, which binds to the T-antigen and acts as an agglutinin. This domain is found in 1 to 6 copies in lectins. The domain is also found in the salt-stress induced protein from rice and an animal prostatic spermine-binding protein. Proteins containing this domain include: Jacalin, a tetrameric plant seed lectin and agglutinin from Artocarpus heterophyllus (jackfruit), which is specific for galactose []. Artocarpin, a tetrameric plant seed lectin from A. heterophyllus []. Lectin MPA, a tetrameric plant seed lectin and agglutinin from Maclura pomifera (Osage orange), []. Heltuba lectin, a plant seed lectin and agglutinin from Helianthus tuberosus (Jerusalem artichoke) []. Agglutinin from Calystegia sepium (Hedge bindweed) []. Griffithsin, an anti-viral lectin from red algae (Griffithsia species) []. ; PDB: 2GUE_B 2HYR_A 2GTY_B 2HYQ_B 3LKY_A 2GUC_B 2GUD_A 2NUO_B 2NU5_B 3LL2_A ....
Probab=35.98 E-value=76 Score=22.94 Aligned_cols=96 Identities=20% Similarity=0.200 Sum_probs=48.5
Q ss_pred CcceEEEeeCCCceecCCCCcceeEeCCCcEEEEEcCCCe-----EEEEEccCCCCCCCceecC--CC--CceeEEEecC
Q 043355 19 GALSHVYIQYPPLRCSIPESRGLHYDDGTKLLISSTSNQI-----FSWKTVPFNPLATSTSDSI--PE--GPILSIRFSL 89 (143)
Q Consensus 19 ~~~~h~~i~~~plR~~~~~~~~vFyDDank~v~avrsggv-----~gv~v~~~~p~~~~~~fri--d~--G~I~sIKFS~ 89 (143)
..+..+++.|-+-..+ .+ .+-|+++++++.....|+- ..+.+ ..|++-.+.+.- ++ .-|.+|+|--
T Consensus 10 ~~v~~i~v~~~~~~I~--~I-q~~Y~~~~g~~~~~~~G~~~g~~~~~~~l--~~~~E~It~isG~~~~~~~~I~sL~F~T 84 (130)
T PF01419_consen 10 DGVKKIVVIYGGDGID--GI-QFTYDDGGGQVWGQQHGGNGGGSTKEFEL--DDPDEYITSISGTYGKGHDYITSLTFTT 84 (130)
T ss_dssp SEEEEEEEEEESSSEE--EE-EEEEEETTEEEEEEEEECSSSTEEEEEEE--ETTTS-EEEEEEEEEETEEEEEEEEEEE
T ss_pred CCCEEEEEEECCCEEE--EE-EEEEECCCceEEeeccCcccccCccceEE--CCCccEEEEEEEEEEcCccEEEEEEEEe
Confidence 3444555555443322 22 2678887776666544332 22333 223443344332 22 3555555553
Q ss_pred CCcEEEEecCCCeEEEEEcCCCceEEEEecCCCCcEEEEE
Q 043355 90 DTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENILGFF 129 (143)
Q Consensus 90 D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~ 129 (143)
+.+ +..+|-. ..++.|+..-. +...|+||+
T Consensus 85 nkg--------~~~~~gg-~~g~~F~~~~~-~~~~ivGF~ 114 (130)
T PF01419_consen 85 NKG--------RYSPFGG-SGGTKFSLPVP-EGGQIVGFF 114 (130)
T ss_dssp SSS--------EEEEEEC-SCSEEEEEEES-ESEEEEEEE
T ss_pred cCC--------cccCccc-ccCCEEEEeec-CCCEEEEEE
Confidence 332 2455555 66677776553 557799997
No 141
>KOG4328 consensus WD40 protein [Function unknown]
Probab=34.94 E-value=3.9e+02 Score=25.19 Aligned_cols=63 Identities=14% Similarity=0.178 Sum_probs=40.0
Q ss_pred CCCceecCCCCcceeEeCCCcEEEEEcCCCeEE--EEEccCCCCCCCceecC-CCCceeEEEecCC
Q 043355 28 YPPLRCSIPESRGLHYDDGTKLLISSTSNQIFS--WKTVPFNPLATSTSDSI-PEGPILSIRFSLD 90 (143)
Q Consensus 28 ~~plR~~~~~~~~vFyDDank~v~avrsggv~g--v~v~~~~p~~~~~~fri-d~G~I~sIKFS~D 90 (143)
|.+||++--.++.|-+..-+.++++..+-.-|. |..-...+...|+--.+ .+-.|.|+-|||+
T Consensus 315 ~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs 380 (498)
T KOG4328|consen 315 YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPS 380 (498)
T ss_pred chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCC
Confidence 788999888999999999999999887644444 54433222222322223 3336666666666
No 142
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=34.65 E-value=2.7e+02 Score=27.61 Aligned_cols=97 Identities=19% Similarity=0.206 Sum_probs=68.6
Q ss_pred EEeeCCCceecCCCCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecC--CCCceeEEEec-CCCcEEEEecCC
Q 043355 24 VYIQYPPLRCSIPESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSI--PEGPILSIRFS-LDTKLIAIQRSS 100 (143)
Q Consensus 24 ~~i~~~plR~~~~~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~fri--d~G~I~sIKFS-~D~KiLAIQRs~ 100 (143)
+|.|-.|. .|+++.+-++..++|+++|++++-+=+. +.++..+.-.| ..++|.+.||= |+-..|||--++
T Consensus 273 ~~~~~~~~---~~e~~~~~~~~~~~~~l~vtaeQnl~l~----d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs 345 (775)
T KOG0319|consen 273 VYKQRQSD---SEEIDHLLAIESMSQLLLVTAEQNLFLY----DEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNS 345 (775)
T ss_pred hhhhccCC---chhhhcceeccccCceEEEEccceEEEE----EccccEEehhhcCCchhheeeeecCCccceEEEEeCC
Confidence 46666665 6669999999999999999998855433 12333333344 77899999985 456999999999
Q ss_pred CeEEEEEcCCCceEEEEecCCCCcEEEEE
Q 043355 101 SEIQFWIRETSEAFSHRCRSDSENILGFF 129 (143)
Q Consensus 101 ~sVEFvn~~~~~~~~q~cK~k~~~IlGF~ 129 (143)
.++-..+..+ .+.|.-....+.++..-
T Consensus 346 ~~lr~y~~~~--~~c~ii~GH~e~vlSL~ 372 (775)
T KOG0319|consen 346 PELRLYTLPT--SYCQIIPGHTEAVLSLD 372 (775)
T ss_pred CceEEEecCC--CceEEEeCchhheeeee
Confidence 9998875533 33445555566666655
No 143
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=34.46 E-value=33 Score=25.95 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=15.8
Q ss_pred CCceeEEEecCCCcEEEEe
Q 043355 79 EGPILSIRFSLDTKLIAIQ 97 (143)
Q Consensus 79 ~G~I~sIKFS~D~KiLAIQ 97 (143)
+|.+-+=-||||+|+++--
T Consensus 12 ~Gv~AAGefs~DGkLv~Yk 30 (109)
T COG4831 12 KGVMAAGEFSPDGKLVEYK 30 (109)
T ss_pred cceeEeceeCCCCceEEee
Confidence 6777777899999999854
No 144
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=34.13 E-value=74 Score=30.49 Aligned_cols=55 Identities=18% Similarity=0.231 Sum_probs=36.5
Q ss_pred EcCCCeEEEEEccCCCCCCCceecC--CCC-ceeEEEecCCCcEEEEecCCCeEEEEEc
Q 043355 53 STSNQIFSWKTVPFNPLATSTSDSI--PEG-PILSIRFSLDTKLIAIQRSSSEIQFWIR 108 (143)
Q Consensus 53 vrsggv~gv~v~~~~p~~~~~~fri--d~G-~I~sIKFS~D~KiLAIQRs~~sVEFvn~ 108 (143)
+-.|.+--|..-+- --.+.+-.+= .+| .|.||+||+|+++|+--=-..++-.|..
T Consensus 336 c~DGSIQ~W~~~~~-~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL 393 (641)
T KOG0772|consen 336 CLDGSIQIWDKGSR-TVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL 393 (641)
T ss_pred ccCCceeeeecCCc-ccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence 34566666775111 1223344442 666 8999999999999997766777777765
No 145
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.69 E-value=3.4e+02 Score=24.05 Aligned_cols=105 Identities=15% Similarity=0.234 Sum_probs=70.6
Q ss_pred CceecCCCCccee---EeCCCcEEEEEcC-CCeEEEEEccCCCCC--CCceecCCCCceeEEEecCC-CcEEEEecCCCe
Q 043355 30 PLRCSIPESRGLH---YDDGTKLLISSTS-NQIFSWKTVPFNPLA--TSTSDSIPEGPILSIRFSLD-TKLIAIQRSSSE 102 (143)
Q Consensus 30 plR~~~~~~~~vF---yDDank~v~avrs-ggv~gv~v~~~~p~~--~~~~frid~G~I~sIKFS~D-~KiLAIQRs~~s 102 (143)
|+|+=-+--++|| |...+++.|.+-| +|. +|. =.|.. ...+|+-.+--|...+|||- +.++|---.+..
T Consensus 96 Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~T--iKL--W~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 96 PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGT--IKL--WDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred chhHHHhhhhheEEeccccccceeEEeeccCCc--eEe--ecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 6666444444444 5566677776644 342 232 44432 23344445558999999995 589999999999
Q ss_pred EEEEEc-CCCceEEEEecCCCCcEEEEEeccCCCceEEEEe
Q 043355 103 IQFWIR-ETSEAFSHRCRSDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 103 VEFvn~-~~~~~~~q~cK~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
..|+++ .+|....-.. .+..||.--|-.-+ +-|++|
T Consensus 172 l~lwdvr~~gk~~~i~a--h~~Eil~cdw~ky~--~~vl~T 208 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEA--HNSEILCCDWSKYN--HNVLAT 208 (311)
T ss_pred EEEEEecCCCceeEEEe--ccceeEeecccccC--CcEEEe
Confidence 999999 5565544444 44789999999999 778877
No 146
>KOG4328 consensus WD40 protein [Function unknown]
Probab=32.36 E-value=1.6e+02 Score=27.68 Aligned_cols=79 Identities=13% Similarity=0.157 Sum_probs=52.7
Q ss_pred eecCCCCcceeEeCC-CcEEEEE--cCCCeEEEEEccCCC-CCCCceecCCCCceeEEEecCCC--cEEEEecCCCeEEE
Q 043355 32 RCSIPESRGLHYDDG-TKLLISS--TSNQIFSWKTVPFNP-LATSTSDSIPEGPILSIRFSLDT--KLIAIQRSSSEIQF 105 (143)
Q Consensus 32 R~~~~~~~~vFyDDa-nk~v~av--rsggv~gv~v~~~~p-~~~~~~frid~G~I~sIKFS~D~--KiLAIQRs~~sVEF 105 (143)
|....-++.+-|-.. |+.++++ ..|.|-=|.+-.-.| .+..+-|...-|||-+|+|||.+ +|++--.. -+|-.
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD-GtiR~ 261 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD-GTIRL 261 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC-ceeee
Confidence 444444677777777 7778887 557777788832234 33455555677899999999986 88886654 35566
Q ss_pred EEcCCC
Q 043355 106 WIRETS 111 (143)
Q Consensus 106 vn~~~~ 111 (143)
..++.+
T Consensus 262 ~D~~~~ 267 (498)
T KOG4328|consen 262 QDFEGN 267 (498)
T ss_pred eeecch
Confidence 666554
No 147
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=31.70 E-value=43 Score=33.59 Aligned_cols=65 Identities=20% Similarity=0.161 Sum_probs=46.0
Q ss_pred CCCCCceec----CCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEEEecCCCCcEEEEEeccC
Q 043355 68 PLATSTSDS----IPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENILGFFWTDC 133 (143)
Q Consensus 68 p~~~~~~fr----id~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~ 133 (143)
+.....-|| .|+-||+.||-|--+++|||--...-+|.|...+...+-..-++- ..|.-.+|+.+
T Consensus 506 rtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~-P~it~leWsl~ 574 (1062)
T KOG1912|consen 506 RTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLAL-PLITVLEWSLP 574 (1062)
T ss_pred ccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcC-CcEEEEeeccc
Confidence 344556677 277799999999999999999888888888875553332222211 34888999843
No 148
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=31.59 E-value=1.5e+02 Score=20.90 Aligned_cols=53 Identities=13% Similarity=0.122 Sum_probs=30.5
Q ss_pred CCcEEEEEcCCCeEEEEEccCCC-CCCCceecCCCC-ceeEEEecCCCcEEEEecCCC
Q 043355 46 GTKLLISSTSNQIFSWKTVPFNP-LATSTSDSIPEG-PILSIRFSLDTKLIAIQRSSS 101 (143)
Q Consensus 46 ank~v~avrsggv~gv~v~~~~p-~~~~~~frid~G-~I~sIKFS~D~KiLAIQRs~~ 101 (143)
+|+.+.+.+.+.-....- ... +.+-+++..++| .+.+|| |.++|+|+++-+..
T Consensus 1 ~~~~~~~~k~~~~l~an~--~~~~~~e~f~le~~~~~~~v~lr-s~~GkYls~~~~G~ 55 (111)
T PF06268_consen 1 ANGYLVSEKFGAHLNANR--ASLSDWETFQLEFDDGSYKVALR-SHNGKYLSVDSDGS 55 (111)
T ss_dssp TTEEEEETTCTCBEEEEE--SSSSCGGSEEEEEETTEEEEEEE-CTTSEEEEEETTSE
T ss_pred CCcEEEEEEcCCEEECCh--hcCcccEEEEEEEECCCCEEEEE-cCCCCEEEEcCCCe
Confidence 466666766666544333 222 222333333454 666888 66999999876654
No 149
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=31.53 E-value=3e+02 Score=25.66 Aligned_cols=74 Identities=22% Similarity=0.324 Sum_probs=55.3
Q ss_pred cCCCCcceeEeCCCcEEEEEc---CCCeEEEEEccCCCCCCCceecC-CCCceeEEEecCCCcEEEEecCCCeEEEEEcC
Q 043355 34 SIPESRGLHYDDGTKLLISST---SNQIFSWKTVPFNPLATSTSDSI-PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRE 109 (143)
Q Consensus 34 ~~~~~~~vFyDDank~v~avr---sggv~gv~v~~~~p~~~~~~fri-d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~ 109 (143)
.-.-+.+|-|---.+++++-. .+.++=|+. |.-+++.... -...|+....|||+..+++-=.+.++-|+|+.
T Consensus 386 tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~----ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 386 TGSQVCSLIWSKKYKELLSTHGYSENQITLWKY----PSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred cCCceeeEEEcCCCCEEEEecCCCCCcEEEEec----cccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence 334488888888888888763 255566666 3333344444 66789999999999999999999999999995
Q ss_pred CC
Q 043355 110 TS 111 (143)
Q Consensus 110 ~~ 111 (143)
+.
T Consensus 462 ~~ 463 (484)
T KOG0305|consen 462 DE 463 (484)
T ss_pred CC
Confidence 43
No 150
>PF11429 Colicin_D: Colicin D; InterPro: IPR024440 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). This entry represents a domain found in the C terminus of colicin D, which is responsible for its catalytic activity []. The domain is also found in some S-type pyocins, which are also bacteriocins.; GO: 0004540 ribonuclease activity; PDB: 1TFO_A 1V74_A 1TFK_A.
Probab=31.03 E-value=79 Score=23.22 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=19.2
Q ss_pred cceeEeCCCcEEEEEcCCC--eEEEEEccC
Q 043355 39 RGLHYDDGTKLLISSTSNQ--IFSWKTVPF 66 (143)
Q Consensus 39 ~~vFyDDank~v~avrsgg--v~gv~v~~~ 66 (143)
.-|||+..++++..+..+| ++||+++|.
T Consensus 52 skV~~N~~T~~~Vi~d~~G~Fvsgwkl~p~ 81 (92)
T PF11429_consen 52 SKVYFNPKTNNVVIIDKDGNFVSGWKLSPG 81 (92)
T ss_dssp -EEEEETTTTEEEEE-TTS-EEEEEE--TT
T ss_pred cEEEEeCCCCeEEEEcCCCCEEEEEecccc
Confidence 4599999999998886654 678998554
No 151
>PRK00571 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=30.56 E-value=1.1e+02 Score=22.78 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=36.7
Q ss_pred CceecCCCCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCceeEEEe
Q 043355 30 PLRCSIPESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRF 87 (143)
Q Consensus 30 plR~~~~~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I~sIKF 87 (143)
.|++++-+-.+++||+.-..|..+...|-+||- |.-.|+...+..|.+ .|+.
T Consensus 3 ~l~l~ivtP~~~~~~~~v~~v~~~~~~G~~gIL-----p~H~p~it~L~~G~l-~i~~ 54 (135)
T PRK00571 3 TLTVDIVSPEGLIYSGEVEEVVVPGTEGELGIL-----PGHAPLLTALKPGVV-RIKK 54 (135)
T ss_pred eEEEEEEcCCCcEEeeeEEEEEEEcCccCeeec-----CCCcceEEEeeceEE-EEEE
Confidence 356666677778999888889999888888864 334555666677766 4444
No 152
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=30.28 E-value=4.2e+02 Score=26.89 Aligned_cols=73 Identities=15% Similarity=0.015 Sum_probs=40.3
Q ss_pred CCceecC-CCCceeEEEecCCCcEEEEec---C---CCeEEEEEcCCCceEEEEecCCCCcEEEEEeccCCCceEEEEeC
Q 043355 71 TSTSDSI-PEGPILSIRFSLDTKLIAIQR---S---SSEIQFWIRETSEAFSHRCRSDSENILGFFWTDCPLCDFVVVKN 143 (143)
Q Consensus 71 ~~~~fri-d~G~I~sIKFS~D~KiLAIQR---s---~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~~cdivlVTn 143 (143)
.+....+ +..+|.+=.||||+|-||-+- . ...|=..+..+...=-.+..-+++.|==+-=..|-.--||.|||
T Consensus 340 n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e~gdt~ivyv~~ 419 (912)
T TIGR02171 340 ASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLENGDTVIVYVSD 419 (912)
T ss_pred CceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecCCCCeEEEEEcC
Confidence 4444545 666899999999999999832 2 12244444433211111222335666555555554345666664
No 153
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=30.12 E-value=86 Score=29.44 Aligned_cols=50 Identities=20% Similarity=0.446 Sum_probs=37.6
Q ss_pred eEEEecCCCcEEEEecCCCeEEEEEcCCCceEEEEecCCCCcEEEEEeccC
Q 043355 83 LSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENILGFFWTDC 133 (143)
Q Consensus 83 ~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~ 133 (143)
..++||||+..|+--=++-.|-|+...|.-++.. -|.....+++.-|-.-
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~-lkah~~~ci~v~wHP~ 485 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSK-LKAHDQPCIGVDWHPV 485 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEEeechhhhhhhc-cccCCcceEEEEecCC
Confidence 4799999999999999999999999977644432 2223456777777543
No 154
>PRK13442 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=30.12 E-value=47 Score=23.41 Aligned_cols=48 Identities=8% Similarity=0.122 Sum_probs=34.8
Q ss_pred CceecCCCCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCce
Q 043355 30 PLRCSIPESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPI 82 (143)
Q Consensus 30 plR~~~~~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I 82 (143)
.|++++=+-.++|||+--.+|.++..+|-+|+-- .-.|+--.+..|.+
T Consensus 5 ~~~l~IvtP~~~~~~~~v~~V~~p~~~G~~gILp-----~H~p~it~L~~G~l 52 (89)
T PRK13442 5 TLHVNIVAADRPVWSGEATMVVARTTEGDIGILP-----GHEPLLGVLESGTV 52 (89)
T ss_pred EEEEEEEcCCccEEeceeEEEEEECCcCCcEecC-----CCcCeEEEEcceEE
Confidence 3567777777899999899999998899888743 33444455666755
No 155
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=29.86 E-value=2.5e+02 Score=28.17 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=29.1
Q ss_pred CceeEEEecCCCcEEEEecCCCeEEEEEcCCC
Q 043355 80 GPILSIRFSLDTKLIAIQRSSSEIQFWIRETS 111 (143)
Q Consensus 80 G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~ 111 (143)
-+|.+++=|+|.-+|||-+.+-+|..++.++.
T Consensus 66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~ 97 (888)
T KOG0306|consen 66 AEVTCLRSSDDILLLAVGYADGSVQIFSLESE 97 (888)
T ss_pred ceEEEeeccCCcceEEEEecCceEEeeccCCC
Confidence 38999999999999999999999999998754
No 156
>PRK13615 lipoprotein LpqB; Provisional
Probab=29.36 E-value=4.9e+02 Score=24.56 Aligned_cols=63 Identities=14% Similarity=0.268 Sum_probs=41.2
Q ss_pred CCCceeEEEecCCCcEEEEecC---CCeEEE--EEcCCCc--eE-E--EEecCCCCcEEEEEeccCCCceEEEEe
Q 043355 78 PEGPILSIRFSLDTKLIAIQRS---SSEIQF--WIRETSE--AF-S--HRCRSDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs---~~sVEF--vn~~~~~--~~-~--q~cK~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
.+|+|.++|.|+|+=-+|+... ...|.. |.+..+. .. + ..--..-...+..-|.... .++.++
T Consensus 415 ~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~--~laVl~ 487 (557)
T PRK13615 415 ATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDEL--DVATLT 487 (557)
T ss_pred CCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCC--EEEEEe
Confidence 6679999999999966666643 233554 6663331 22 1 2222334478999999999 887764
No 157
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=29.32 E-value=5.6e+02 Score=25.16 Aligned_cols=105 Identities=16% Similarity=0.252 Sum_probs=74.9
Q ss_pred CCceecCCCCcceeEeCCCcEEEEEcCCCeEE-EEEccCCC---CCCCceecCCCC-----ceeEEEecCCCcEEEEecC
Q 043355 29 PPLRCSIPESRGLHYDDGTKLLISSTSNQIFS-WKTVPFNP---LATSTSDSIPEG-----PILSIRFSLDTKLIAIQRS 99 (143)
Q Consensus 29 ~plR~~~~~~~~vFyDDank~v~avrsggv~g-v~v~~~~p---~~~~~~frid~G-----~I~sIKFS~D~KiLAIQRs 99 (143)
-||-.+.++++.+--.+-+++|.+=+-+|+.. |.--.+.. -+-+.+..-..| .|.+|+|+-|+--+||--+
T Consensus 169 ~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts 248 (703)
T KOG2321|consen 169 NPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS 248 (703)
T ss_pred cccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc
Confidence 48888888899888888898888766555443 33211100 011111111223 4999999988999999999
Q ss_pred CCeEEEEEcCCCceEEEEecCCCCcEEEEEeccC
Q 043355 100 SSEIQFWIRETSEAFSHRCRSDSENILGFFWTDC 133 (143)
Q Consensus 100 ~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~ 133 (143)
+-.|=|-..-+..++--+-+...-.|.-|.|.++
T Consensus 249 ~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 249 TGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred CCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence 9999998888887777777777788999999887
No 158
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=29.32 E-value=61 Score=24.40 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=18.0
Q ss_pred CCCceeEEEecCCCcEEEEec
Q 043355 78 PEGPILSIRFSLDTKLIAIQR 98 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQR 98 (143)
=+|-+-+.+||+|+|+++.+=
T Consensus 9 lpGv~AAg~Fs~~G~l~e~~G 29 (108)
T PF09941_consen 9 LPGVVAAGEFSDDGKLVEYKG 29 (108)
T ss_pred CCCeEEEEEECCCCeEEeeec
Confidence 478899999999999997654
No 159
>PF03285 Paralemmin: Paralemmin; InterPro: IPR004965 Paralemmin was identified in the chicken lens as a protein with a molecular weight of 65 kDa (isoform 1) and a splice variant of 60 kDa (isoform 2). Isoform 2 is predominant during infancy and levels of isoform 1 increase with age. Paralemmin is localised to the plasma membrane of fibre cells, and was not detected in the annular pad cells. Its localisation to the short side of the fibre cell and the sites of fibre cell interlocking suggests that paralemmin may play a role in the development of such interdigitating processes []. Palmitoylation is important for localising these proteins to the filopodia of dendritic cells where they have been implicated in the regulation of membrane dynamics and process outgrowth. ; GO: 0008360 regulation of cell shape, 0016020 membrane
Probab=28.76 E-value=35 Score=29.61 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=15.3
Q ss_pred eEeCCCcEEEEEcCCCeE
Q 043355 42 HYDDGTKLLISSTSNQIF 59 (143)
Q Consensus 42 FyDDank~v~avrsggv~ 59 (143)
=|||+.|.|-+|+|++-+
T Consensus 90 VYdDgrKVVyaV~S~~g~ 107 (278)
T PF03285_consen 90 VYDDGRKVVYAVHSGGGT 107 (278)
T ss_pred cccccceEEEEEecCCCc
Confidence 799999999999886533
No 160
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=28.46 E-value=3.2e+02 Score=25.75 Aligned_cols=55 Identities=16% Similarity=0.251 Sum_probs=44.4
Q ss_pred CceeEEEecCCCcEEEEecCCCeEEEEEcCCC--ceEEEEecCCCCcEEEEEeccCC
Q 043355 80 GPILSIRFSLDTKLIAIQRSSSEIQFWIRETS--EAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 80 G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~--~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
.+|==++||++||+||---++++.=++..-.. ....++|-+....+.-.-|--..
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd 281 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD 281 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCC
Confidence 38999999999999999999999887776332 55667888888888888886554
No 161
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=28.33 E-value=1.4e+02 Score=27.11 Aligned_cols=73 Identities=18% Similarity=0.081 Sum_probs=37.4
Q ss_pred cceeEeCCCcEEEEEcCCCeEE-EEEccCCCCCCCceecCCCC-ceeEEEecCCCcEEEEecCCCeEEEEEcCCCce
Q 043355 39 RGLHYDDGTKLLISSTSNQIFS-WKTVPFNPLATSTSDSIPEG-PILSIRFSLDTKLIAIQRSSSEIQFWIRETSEA 113 (143)
Q Consensus 39 ~~vFyDDank~v~avrsggv~g-v~v~~~~p~~~~~~frid~G-~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~ 113 (143)
.+-||+|++|+||+-..+|-.. +.+... ..+..++.--+| .....-.|++.+.|-=++++++|.=++..|..+
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~--t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLLDLA--TGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEEETT--T-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEEEcc--cCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE
Confidence 3457999999999875333222 333112 223333332222 233566789999988888999999999888643
No 162
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=27.86 E-value=1.8e+02 Score=29.05 Aligned_cols=60 Identities=20% Similarity=0.267 Sum_probs=39.4
Q ss_pred CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEEEecC----CCCcEEEEEeccCCCceEEEEe
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRS----DSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~----k~~~IlGF~Wt~~~~cdivlVT 142 (143)
-.++|.+|.+|||++.+|.-=.+-.|-.-+--.+.+-.+.-|. ..+.|+ |.-.. .+|+|+
T Consensus 719 HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~---wacdg--r~viv~ 782 (1012)
T KOG1445|consen 719 HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARIL---WACDG--RIVIVV 782 (1012)
T ss_pred CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEE---EEecC--cEEEEe
Confidence 4679999999999999998777777765554333333333331 235554 77666 666665
No 163
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]
Probab=27.74 E-value=1.3e+02 Score=24.14 Aligned_cols=48 Identities=21% Similarity=0.151 Sum_probs=35.7
Q ss_pred CCCceecCCCCcceeEeCCCcE-EEEEcCCCeEEEEEccCCC-CCCCceecC--CCC
Q 043355 28 YPPLRCSIPESRGLHYDDGTKL-LISSTSNQIFSWKTVPFNP-LATSTSDSI--PEG 80 (143)
Q Consensus 28 ~~plR~~~~~~~~vFyDDank~-v~avrsggv~gv~v~~~~p-~~~~~~fri--d~G 80 (143)
++++--.+++.+.+.|=|-|-. ...| .+|.+.|..| ..++.+|++ +-|
T Consensus 14 ~~~~~~~i~~a~~~~yCd~~d~~~VkV-----~~Vni~PnP~a~Ge~aTf~i~~ntg 65 (153)
T KOG4680|consen 14 PSLLTKPINGATPVHYCDINDEYEVKV-----KEVNISPNPPARGENATFSISGNTG 65 (153)
T ss_pred cccccccccCCCcchhhhhcccceEEE-----EEEecCCCCCCCCCccEEEEecccc
Confidence 5677778889999999766544 5555 8899977755 678899986 556
No 164
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=27.61 E-value=2.5e+02 Score=27.10 Aligned_cols=96 Identities=19% Similarity=0.198 Sum_probs=62.4
Q ss_pred CCCCcceeEeCCCcEEEEEcCCC--eEEEEEccCCCCCCCceec--CCCC---ceeEEEecCCCcEEEEecCCCeEEEEE
Q 043355 35 IPESRGLHYDDGTKLLISSTSNQ--IFSWKTVPFNPLATSTSDS--IPEG---PILSIRFSLDTKLIAIQRSSSEIQFWI 107 (143)
Q Consensus 35 ~~~~~~vFyDDank~v~avrsgg--v~gv~v~~~~p~~~~~~fr--id~G---~I~sIKFS~D~KiLAIQRs~~sVEFvn 107 (143)
+-+++..=+-.-||+.|-.++.. +-=|.| ..+...-.+|. ...| ++-+-.|++|+|.+|--=-+-+|+||.
T Consensus 268 ia~lt~g~whP~~k~~FlT~s~DgtlRiWdv--~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~ 345 (641)
T KOG0772|consen 268 IAELTCGCWHPDNKEEFLTCSYDGTLRIWDV--NNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWD 345 (641)
T ss_pred eeeeeccccccCcccceEEecCCCcEEEEec--CCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeee
Confidence 34466666777788887776633 334777 44433333443 3334 778999999999999999999999999
Q ss_pred cCC----CceEEEEecCCCCcEEEEEecc
Q 043355 108 RET----SEAFSHRCRSDSENILGFFWTD 132 (143)
Q Consensus 108 ~~~----~~~~~q~cK~k~~~IlGF~Wt~ 132 (143)
... ..-+....+.+...|.+.-+-.
T Consensus 346 ~~~~~v~p~~~vk~AH~~g~~Itsi~FS~ 374 (641)
T KOG0772|consen 346 KGSRTVRPVMKVKDAHLPGQDITSISFSY 374 (641)
T ss_pred cCCcccccceEeeeccCCCCceeEEEecc
Confidence 722 2444445555555666655443
No 165
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=27.14 E-value=3e+02 Score=27.83 Aligned_cols=105 Identities=23% Similarity=0.291 Sum_probs=67.0
Q ss_pred CCcceeEeCCCcEEEEEcCCCeEE-EEEccCC------C---CC---------------CCcee-----------cC--C
Q 043355 37 ESRGLHYDDGTKLLISSTSNQIFS-WKTVPFN------P---LA---------------TSTSD-----------SI--P 78 (143)
Q Consensus 37 ~~~~vFyDDank~v~avrsggv~g-v~v~~~~------p---~~---------------~~~~f-----------ri--d 78 (143)
.+++|--|..|+.+.+-.+.|+.. |.-+.+- . -. .-.++ |. -
T Consensus 495 ~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g 574 (910)
T KOG1539|consen 495 EVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG 574 (910)
T ss_pred ceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc
Confidence 488899999999999988877766 3322211 0 00 00111 11 1
Q ss_pred CC-ceeEEEecCCCcEEEEecCCCeEEEEEcCCC-----ceEEEEecCC----CCcEEEEEeccCCCceEEEEeC
Q 043355 79 EG-PILSIRFSLDTKLIAIQRSSSEIQFWIRETS-----EAFSHRCRSD----SENILGFFWTDCPLCDFVVVKN 143 (143)
Q Consensus 79 ~G-~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~-----~~~~q~cK~k----~~~IlGF~Wt~~~~cdivlVTn 143 (143)
.| +|-+.-||||+|.|.+-=-+.+|-.|..+++ ..+.-.|.+- +-..|.-.=++-+ .|.+-+|
T Consensus 575 h~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~--gIylWsN 647 (910)
T KOG1539|consen 575 HGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQN--GIYLWSN 647 (910)
T ss_pred cccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCc--eEEEEEc
Confidence 34 8899999999999999999999999999887 3344455532 3345555555555 5555444
No 166
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=27.05 E-value=4.1e+02 Score=23.96 Aligned_cols=72 Identities=14% Similarity=0.255 Sum_probs=57.4
Q ss_pred CCCCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCc--EEEEecCCCeEEEEEcCC
Q 043355 35 IPESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTK--LIAIQRSSSEIQFWIRET 110 (143)
Q Consensus 35 ~~~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~K--iLAIQRs~~sVEFvn~~~ 110 (143)
.|-+.--+=||++|.-..-..+.+.-|.+ ....+..+-+-+|||++++|=+... .|+.--=+++|.||.--.
T Consensus 73 ~PvL~v~WsddgskVf~g~~Dk~~k~wDL----~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~ 146 (347)
T KOG0647|consen 73 GPVLDVCWSDDGSKVFSGGCDKQAKLWDL----ASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS 146 (347)
T ss_pred CCeEEEEEccCCceEEeeccCCceEEEEc----cCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCC
Confidence 34466678899987777777888888888 3446778888999999999988876 888888899999998733
No 167
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=26.17 E-value=4.7e+02 Score=23.29 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=45.2
Q ss_pred ceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEEEecCCCCcEEEEEeccCC
Q 043355 81 PILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 81 ~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
-|+++.||+|++-|----.++++-.+|--....|+..--.+++=+..+.|.-++
T Consensus 107 dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 107 DVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred ceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC
Confidence 789999999997777777789999999988877877666657778899998874
No 168
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=25.17 E-value=4.3e+02 Score=24.20 Aligned_cols=67 Identities=21% Similarity=0.139 Sum_probs=48.5
Q ss_pred cceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecC-CCCceeEEEecCCCcEEEEecCCCeEEEEE
Q 043355 39 RGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSI-PEGPILSIRFSLDTKLIAIQRSSSEIQFWI 107 (143)
Q Consensus 39 ~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~fri-d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn 107 (143)
...|||-.-+-|++=++-|-+-|-= -. --+-..+||+ .--.|++|.||-.++.|+|--+++.|--..
T Consensus 157 s~~~fdr~g~yIitGtsKGkllv~~-a~-t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye 224 (405)
T KOG1273|consen 157 SHGVFDRRGKYIITGTSKGKLLVYD-AE-TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYE 224 (405)
T ss_pred ccccccCCCCEEEEecCcceEEEEe-cc-hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEe
Confidence 3458999999999887766444322 02 2345678998 547999999999999999988877665433
No 169
>PF07865 DUF1652: Protein of unknown function (DUF1652); InterPro: IPR012448 The proteins in this entry have not been characterised.
Probab=25.16 E-value=55 Score=22.69 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=17.4
Q ss_pred eCCCceecCCC-----CcceeEeCCCcEE-EEE
Q 043355 27 QYPPLRCSIPE-----SRGLHYDDGTKLL-ISS 53 (143)
Q Consensus 27 ~~~plR~~~~~-----~~~vFyDDank~v-~av 53 (143)
.|.||||...- .+-=-||..++.+ ++|
T Consensus 11 aflPl~C~ct~~~~~smtvrl~d~~sg~~~l~v 43 (69)
T PF07865_consen 11 AFLPLRCECTIAPDGSMTVRLFDPASGRVELTV 43 (69)
T ss_pred cCCCceeEEEECCCCcEEEEEecCCCCcEEEEE
Confidence 47899986432 3434557777777 666
No 170
>PF08814 XisH: XisH protein; InterPro: IPR014919 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 2OKF_A.
Probab=24.36 E-value=60 Score=25.41 Aligned_cols=40 Identities=25% Similarity=0.299 Sum_probs=20.1
Q ss_pred eeCCCceecCCCCcceeEeCCCcEEEEE-cCCCeEEEEEccC
Q 043355 26 IQYPPLRCSIPESRGLHYDDGTKLLISS-TSNQIFSWKTVPF 66 (143)
Q Consensus 26 i~~~plR~~~~~~~~vFyDDank~v~av-rsggv~gv~v~~~ 66 (143)
|-|-|||+...+ ..+|=|=+..++++- |.+.-..|.+|++
T Consensus 22 IT~DPl~l~~~~-~~~~iDLgAek~iaAek~~~kIAVEIKSF 62 (135)
T PF08814_consen 22 ITHDPLRLKYGG-VDLYIDLGAEKLIAAEKDGEKIAVEIKSF 62 (135)
T ss_dssp EEESS---EETT-EE----------EEEEETTEEEEEEE---
T ss_pred EECCCcEEEECc-EEEEeccchHHHHHhhccCceEEEEEeCC
Confidence 668899999999 569999986666665 8899999999886
No 171
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=24.15 E-value=1.2e+02 Score=25.26 Aligned_cols=36 Identities=14% Similarity=-0.063 Sum_probs=27.0
Q ss_pred CCCceecCCC---CcceeEeCCCcEEEEE--cCCCeEEEEE
Q 043355 28 YPPLRCSIPE---SRGLHYDDGTKLLISS--TSNQIFSWKT 63 (143)
Q Consensus 28 ~~plR~~~~~---~~~vFyDDank~v~av--rsggv~gv~v 63 (143)
.++--+.+++ +.--+||+.+||.+++ .+|.+|.+++
T Consensus 50 ~~~~~~tp~Gn~~~vD~~~~~~~kQFiTv~Tk~gn~FyliI 90 (218)
T PF14283_consen 50 EEGGPLTPEGNATLVDDYTDEDGKQFITVTTKSGNTFYLII 90 (218)
T ss_pred CCCCCcCCCCCceEeccccCCCCcEEEEEEecCCCEEEEEE
Confidence 3444555555 3446799999999998 6788999999
No 172
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=23.81 E-value=44 Score=29.58 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=21.2
Q ss_pred CceeEEEecCCCcEEEEecCCCeEEEEEc
Q 043355 80 GPILSIRFSLDTKLIAIQRSSSEIQFWIR 108 (143)
Q Consensus 80 G~I~sIKFS~D~KiLAIQRs~~sVEFvn~ 108 (143)
|||-++.|+||+|.-|=-=-+-.|-...|
T Consensus 288 GPINsvAfhPdGksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 288 GPINSVAFHPDGKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred cCcceeEECCCCcccccCCCCceEEEEEe
Confidence 69999999999998765554555554444
No 173
>CHL00063 atpE ATP synthase CF1 epsilon subunit
Probab=22.61 E-value=1.8e+02 Score=21.87 Aligned_cols=47 Identities=11% Similarity=0.143 Sum_probs=33.5
Q ss_pred ceecCCCCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCce
Q 043355 31 LRCSIPESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPI 82 (143)
Q Consensus 31 lR~~~~~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I 82 (143)
|++++-+-.++||+.--..|..+...|-+|+-- .-.|+.-.+..|.+
T Consensus 3 l~l~IvtP~~~~~~~~v~~V~~p~~~G~~gIL~-----~H~p~it~L~~G~l 49 (134)
T CHL00063 3 LNLRVLTPNRIVWDSEVEEIILPTNSGQIGVLP-----NHAPIATALDIGVL 49 (134)
T ss_pred EEEEEEcCCceEEeeeEEEEEEEcCccCceecC-----CCcceEeEecceEE
Confidence 566777777899988888888898888888643 33445555566655
No 174
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=22.58 E-value=1.5e+02 Score=27.17 Aligned_cols=30 Identities=23% Similarity=0.396 Sum_probs=26.5
Q ss_pred CCceeEEEecCCCcEEEEecCCCeEEEEEc
Q 043355 79 EGPILSIRFSLDTKLIAIQRSSSEIQFWIR 108 (143)
Q Consensus 79 ~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~ 108 (143)
.++|.++.||.|+|.||.--.+.+|-.|..
T Consensus 86 ~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~ 115 (420)
T KOG2096|consen 86 KKEVTDVAFSSDGKKLATISGDRSIRLWDV 115 (420)
T ss_pred CCceeeeEEcCCCceeEEEeCCceEEEEec
Confidence 449999999999999999999999887765
No 175
>COG0355 AtpC F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) [Energy production and conversion]
Probab=22.41 E-value=2.9e+02 Score=21.15 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=40.0
Q ss_pred ceecCCCCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCceeEEEecC
Q 043355 31 LRCSIPESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSL 89 (143)
Q Consensus 31 lR~~~~~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~ 89 (143)
|++++=.-.+.+||---+.|.+++..|-+|+- |.-.|..-.+..|.| .|++..
T Consensus 4 l~l~IVsP~~~i~~g~v~~V~~~t~eGe~GIL-----p~H~Plit~Lk~g~v-~i~~~~ 56 (135)
T COG0355 4 LKLEIVSPEGIIYSGEVKSVVVPTTEGELGIL-----PGHAPLITALKPGVV-RIKTED 56 (135)
T ss_pred eEEEEEcCCceEEeeEEEEEEEecCCeeeecC-----CCCccceeeecCcEE-EEEEcC
Confidence 67777778889999999999999999988863 444556666677766 455554
No 176
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=22.40 E-value=3.3e+02 Score=24.34 Aligned_cols=70 Identities=21% Similarity=0.240 Sum_probs=43.4
Q ss_pred eeEeCCCcEEEEEcCC--------CeEEEEEccCCCCCCCceecCC-CCceeEEEecCCCc--EEEEecCCCeEEEEEcC
Q 043355 41 LHYDDGTKLLISSTSN--------QIFSWKTVPFNPLATSTSDSIP-EGPILSIRFSLDTK--LIAIQRSSSEIQFWIRE 109 (143)
Q Consensus 41 vFyDDank~v~avrsg--------gv~gv~v~~~~p~~~~~~frid-~G~I~sIKFS~D~K--iLAIQRs~~sVEFvn~~ 109 (143)
+=|+.+++++++.-.. +.+.|-| .++....-.-|++ +++|.||..|-|.| ++|+-+.+..++...-.
T Consensus 243 ~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv--~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~ 320 (342)
T PF06433_consen 243 IAYHAASGRLYVLMHQGGEGSHKDPGTEVWV--YDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAA 320 (342)
T ss_dssp EEEETTTTEEEEEEEE--TT-TTS-EEEEEE--EETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETT
T ss_pred eeeccccCeEEEEecCCCCCCccCCceEEEE--EECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCc
Confidence 5577777777765222 2233333 2233233333453 46888999999986 55888888999999998
Q ss_pred CCc
Q 043355 110 TSE 112 (143)
Q Consensus 110 ~~~ 112 (143)
||.
T Consensus 321 tGk 323 (342)
T PF06433_consen 321 TGK 323 (342)
T ss_dssp T--
T ss_pred CCc
Confidence 883
No 177
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=22.35 E-value=97 Score=30.69 Aligned_cols=40 Identities=33% Similarity=0.450 Sum_probs=35.5
Q ss_pred ceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCc
Q 043355 73 TSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSE 112 (143)
Q Consensus 73 ~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~ 112 (143)
+++.-+++||.|++|+.+..+||---.+.+|-||..|.+.
T Consensus 64 ~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk 103 (825)
T KOG0267|consen 64 TSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK 103 (825)
T ss_pred heeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence 4455589999999999999999999999999999998763
No 178
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=22.24 E-value=2.8e+02 Score=19.33 Aligned_cols=50 Identities=12% Similarity=0.093 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCeEEEEEccCCCCCCCceecC---CCCceeEEEecCCCcEEEEecCC
Q 043355 47 TKLLISSTSNQIFSWKTVPFNPLATSTSDSI---PEGPILSIRFSLDTKLIAIQRSS 100 (143)
Q Consensus 47 nk~v~avrsggv~gv~v~~~~p~~~~~~fri---d~G~I~sIKFS~D~KiLAIQRs~ 100 (143)
|+.-+++..+| ..+......+.. --.|.+ ++|.| ++| |.++|+|++....
T Consensus 10 ~gkyl~~~~~g-~~v~a~~~~~~~-~e~F~l~~~~~g~v-~Lr-s~~G~yls~~~~g 62 (119)
T cd00257 10 NGRYLSAEAGG-DKVDANRDSLKG-DETFTLEFDNTGKY-ALR-SHDGKYLSADSDG 62 (119)
T ss_pred CCCEEEEeccC-CEEEEcCccCCC-ceEEEEEECCCCeE-EEE-ECCCcEEEEECCC
Confidence 44445555555 233332233321 234554 34444 777 5688999887644
No 179
>PRK13444 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=21.96 E-value=85 Score=23.44 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=33.1
Q ss_pred ceecCCCCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCce
Q 043355 31 LRCSIPESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPI 82 (143)
Q Consensus 31 lR~~~~~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I 82 (143)
|++.+=+-.++|||+--.+|..+..+|-+|+- |.-.|+--.+..|.+
T Consensus 6 ~~l~IvtP~~~~~~~~v~~V~~p~~~G~~gIL-----p~H~p~it~L~~G~l 52 (127)
T PRK13444 6 LTVSVISPEKILYKGEVDSLIVPGSEGFFGIL-----PNHAPLVATLGIGLL 52 (127)
T ss_pred eEEEEEcCCceEEeceEEEEEEECCccCeEec-----CCCcCeEeEeccEEE
Confidence 55666666789999888999999999988864 333444445566644
No 180
>PRK13446 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=21.87 E-value=2.4e+02 Score=21.24 Aligned_cols=48 Identities=10% Similarity=0.030 Sum_probs=34.3
Q ss_pred CceecCCCCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCce
Q 043355 30 PLRCSIPESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPI 82 (143)
Q Consensus 30 plR~~~~~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I 82 (143)
.|++.+=+-.++|||+--..|..+...|-+||- |.-.|+--.+..|.+
T Consensus 4 ~l~l~IvTP~~~~~~~~v~~V~lpt~~G~~gIL-----p~H~p~it~L~~G~l 51 (136)
T PRK13446 4 KLKLEIVTPEKKVLSEEVDEVGAPGVLGEFGVL-----PGHAPFLTALKIGEL 51 (136)
T ss_pred ccEEEEEcCCceEEeeeEEEEEEEcCccCeEEc-----CCCcceEEEeeccEE
Confidence 466777777788999888888889888888764 333445555666655
No 181
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=21.40 E-value=5.3e+02 Score=22.20 Aligned_cols=70 Identities=13% Similarity=0.113 Sum_probs=47.4
Q ss_pred CcceeEeCCCcEEEEEcCC--CeEEEEEccCCCCCCCceecCCC--CceeEEEecCCCc-EEEEecCCCeEEEEEcCCC
Q 043355 38 SRGLHYDDGTKLLISSTSN--QIFSWKTVPFNPLATSTSDSIPE--GPILSIRFSLDTK-LIAIQRSSSEIQFWIRETS 111 (143)
Q Consensus 38 ~~~vFyDDank~v~avrsg--gv~gv~v~~~~p~~~~~~frid~--G~I~sIKFS~D~K-iLAIQRs~~sVEFvn~~~~ 111 (143)
-.++=+|..++.+.+...+ .-+-+++ +......+.. +.- .| ..+.++||++ +....-.+.+|-+++..+.
T Consensus 118 P~~~~~~~~~~~vYV~n~~~~~~~vsvi--d~~t~~~~~~-~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~ 192 (381)
T COG3391 118 PVGLAVDPDGKYVYVANAGNGNNTVSVI--DAATNKVTAT-IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN 192 (381)
T ss_pred CceEEECCCCCEEEEEecccCCceEEEE--eCCCCeEEEE-EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc
Confidence 3456788888899888774 3455555 3222222333 433 36 7999999996 8888888999999995443
No 182
>TIGR01216 ATP_synt_epsi ATP synthase, F1 epsilon subunit (delta in mitochondria). This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation.
Probab=21.21 E-value=2.5e+02 Score=20.81 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=30.8
Q ss_pred eecCCCCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCce
Q 043355 32 RCSIPESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPI 82 (143)
Q Consensus 32 R~~~~~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I 82 (143)
++.+=+-.++|||+--..|..+..+|-+|+-- .-.|+--.+..|.+
T Consensus 3 ~l~IvtP~~~~~~~~v~~v~~~t~~G~~giL~-----~H~p~i~~L~~G~v 48 (130)
T TIGR01216 3 KLEIVTPEGEIYSGEVESVILPGSEGELGILP-----GHAPLITALKPGVV 48 (130)
T ss_pred EEEEEcCCceEEeeeEEEEEEECCcCCeeecC-----CChhhEeEecceEE
Confidence 34444556689998888888888888888643 33445555566655
No 183
>COG4703 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.20 E-value=1.1e+02 Score=21.83 Aligned_cols=19 Identities=16% Similarity=0.454 Sum_probs=15.1
Q ss_pred CCC-ceeEEEecCCCcEEEE
Q 043355 78 PEG-PILSIRFSLDTKLIAI 96 (143)
Q Consensus 78 d~G-~I~sIKFS~D~KiLAI 96 (143)
-+| +|..+|||+|....++
T Consensus 29 r~G~vv~eV~ys~~~e~F~l 48 (74)
T COG4703 29 RNGEVVCEVKYSEDNETFEL 48 (74)
T ss_pred cCCEEEEEEEecCCCceEEE
Confidence 567 7899999999985544
No 184
>PF08134 cIII: cIII protein family; InterPro: IPR012995 This family consists of the CIII family of regulatory proteins. The lambda CIII protein has 54 amino acids and it forms an amphipathic helix within its amino acid sequence. Lambda CIII stabilises the lambda CII protein and the host sigma factor 32, responsible for transcribing genes of the heat shock regulon [].
Probab=21.13 E-value=54 Score=21.12 Aligned_cols=15 Identities=40% Similarity=0.682 Sum_probs=11.7
Q ss_pred CeeeccCCCcceEEE
Q 043355 11 PSIGLSGSGALSHVY 25 (143)
Q Consensus 11 ~~~~~~~~~~~~h~~ 25 (143)
|+..+.|+|-+|+-|
T Consensus 2 M~~~laG~gvmSAyY 16 (44)
T PF08134_consen 2 MHLQLAGSGVMSAYY 16 (44)
T ss_pred eeEEecCceeeeeec
Confidence 567888988888765
No 185
>PRK14736 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=21.08 E-value=2.4e+02 Score=21.37 Aligned_cols=51 Identities=8% Similarity=0.027 Sum_probs=36.1
Q ss_pred ceecCCCCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCceeEEEe
Q 043355 31 LRCSIPESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRF 87 (143)
Q Consensus 31 lR~~~~~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I~sIKF 87 (143)
+++++=+-.++||+.--..|..+..+|-+||-- .-.|+--.+..|.++ |+.
T Consensus 4 ~~l~IvTP~~~~~~~~v~~V~vp~~~G~~gILp-----~H~P~it~L~~G~l~-i~~ 54 (133)
T PRK14736 4 FHFDLVGPERTLYSGEVEAVQLPGSEGEMTVLP-----GHAPVLTTLKVGVIT-VTE 54 (133)
T ss_pred eEEEEEcCCccEEeeeeEEEEEecCccCeeEcC-----CChhhEeEecceEEE-EEE
Confidence 556666667899998888999998888888643 334555566777763 444
No 186
>TIGR03166 alt_F1F0_F1_eps alternate F1F0 ATPase, F1 subunit epsilon. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 epsilon subunit of this apparent second ATP synthase.
Probab=21.04 E-value=2.4e+02 Score=21.12 Aligned_cols=43 Identities=12% Similarity=0.137 Sum_probs=29.9
Q ss_pred CCCcceeEe-CCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCcee
Q 043355 36 PESRGLHYD-DGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPIL 83 (143)
Q Consensus 36 ~~~~~vFyD-Dank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I~ 83 (143)
=+-.++||| +--.+|.++..+|-+|+- |+-.|+.-.+..|.++
T Consensus 5 vtP~~~~~~~~~v~~v~~~~~~G~~GIL-----p~H~p~it~L~~G~l~ 48 (122)
T TIGR03166 5 LTPFRVFLDKLPVTRIVAETESGSFGLL-----PGHVDCVAALVPGILI 48 (122)
T ss_pred ECCCeeEEecCcEEEEEEEcCcCCeEEc-----CCCcCeEeEeccEEEE
Confidence 344579999 778888888888888864 3345555566777663
No 187
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=20.83 E-value=4.7e+02 Score=26.03 Aligned_cols=77 Identities=16% Similarity=0.214 Sum_probs=50.1
Q ss_pred eecCCCCcceeEeCCCcEEEEEcCCCeEE-EEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCC
Q 043355 32 RCSIPESRGLHYDDGTKLLISSTSNQIFS-WKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRET 110 (143)
Q Consensus 32 R~~~~~~~~vFyDDank~v~avrsggv~g-v~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~ 110 (143)
|++--+++.|=+-+.+++|.+=-.+..-. |-+ . ...---+++=-+--|=+++||+..++||.--.+++|-+|+..+
T Consensus 460 ~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~l--e-~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~ 536 (775)
T KOG0319|consen 460 RAHDKDINCVAIAPNDKLIATGSQDKTAKIWDL--E-QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST 536 (775)
T ss_pred HhhcccccceEecCCCceEEecccccceeeecc--c-CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc
Confidence 56677788898888777766542232111 222 1 0111122222233577999999999999999999999999965
Q ss_pred C
Q 043355 111 S 111 (143)
Q Consensus 111 ~ 111 (143)
.
T Consensus 537 f 537 (775)
T KOG0319|consen 537 F 537 (775)
T ss_pred c
Confidence 4
No 188
>PF07930 DAP_B: D-aminopeptidase, domain B; InterPro: IPR012856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. D-aminopeptidase (Q9ZBA9 from SWISSPROT) is a dimeric enzyme with each monomer being composed of three domains. Domain B is organised to form a beta barrel made up of eight antiparallel beta strands. It is connected to domain A, the catalytic domain, by an eight-residue sequence, and also interacts with both domains A and C via non-covalent bonds. Domain B probably functions in maintaining domain C in a good position to interact with the catalytic domain []. This domain is found in peptidases that belong to MEROPS peptidase family S12 (D-Ala-D-Ala carboxypeptidase B family, clan ME).; GO: 0004177 aminopeptidase activity; PDB: 1EI5_A.
Probab=20.82 E-value=63 Score=23.77 Aligned_cols=30 Identities=20% Similarity=0.173 Sum_probs=14.4
Q ss_pred CCceecCCC-CcceeEeCCCcEEEEEcCCCe
Q 043355 29 PPLRCSIPE-SRGLHYDDGTKLLISSTSNQI 58 (143)
Q Consensus 29 ~plR~~~~~-~~~vFyDDank~v~avrsggv 58 (143)
.|-|.+++. -.+.|+|+.+++++.++.++.
T Consensus 3 ~~~~v~a~~~W~G~wLD~etgL~l~i~~~~~ 33 (88)
T PF07930_consen 3 EPTRVQASPAWFGSWLDPETGLVLRIEDAGQ 33 (88)
T ss_dssp --------GGG-EEEE-TTT--EEEEEE-ST
T ss_pred ccEeccCCCCcceeeEcCCCceEEEeecCCC
Confidence 355666655 889999999999999977553
No 189
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=20.74 E-value=1.3e+02 Score=28.03 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=27.4
Q ss_pred CceeEEEecCCCcEEEEecCCCeEEEEEc
Q 043355 80 GPILSIRFSLDTKLIAIQRSSSEIQFWIR 108 (143)
Q Consensus 80 G~I~sIKFS~D~KiLAIQRs~~sVEFvn~ 108 (143)
+||.++.|||+|-.||.-=+++++-.|..
T Consensus 346 k~I~~V~fsPNGy~lATgs~Dnt~kVWDL 374 (459)
T KOG0272|consen 346 KEILSVAFSPNGYHLATGSSDNTCKVWDL 374 (459)
T ss_pred cceeeEeECCCceEEeecCCCCcEEEeee
Confidence 49999999999999999999999999988
No 190
>PRK00539 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=20.63 E-value=2.6e+02 Score=21.13 Aligned_cols=52 Identities=15% Similarity=0.142 Sum_probs=37.4
Q ss_pred ceecCCCCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCceeEEEec
Q 043355 31 LRCSIPESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFS 88 (143)
Q Consensus 31 lR~~~~~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS 88 (143)
+++.+=+-.++||+.--..|..+..+|-+||- |.-.|+.-.+..|.+ .|+..
T Consensus 4 ~~l~IvTP~~~~~~~~v~~V~l~t~~G~~gIL-----~~Haplit~L~~G~~-~i~~~ 55 (133)
T PRK00539 4 LRFLVLSPSGIKLDEKIISAQVKTTEGYAGLN-----RNRAPLIAAIQSHVC-KITFA 55 (133)
T ss_pred cEEEEEcCCCeEEeceEEEEEEecCccCceec-----CCCcceEeEecceEE-EEEEC
Confidence 45666666779999998889999888887764 444566666777876 45553
No 191
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=20.42 E-value=4e+02 Score=24.21 Aligned_cols=70 Identities=20% Similarity=0.338 Sum_probs=56.4
Q ss_pred CCCCceecCCCCceeEEEecCC---CcEEEEecCCCeEEEEEcCCCceEEEEecCCCCcEEEEEeccCCCceEEEEe
Q 043355 69 LATSTSDSIPEGPILSIRFSLD---TKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 69 ~~~~~~frid~G~I~sIKFS~D---~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
......|.| +|.|.+=.+||= ..++|+-..+..|..-...+| .|+++.......|+...|...+ |.||-|
T Consensus 134 lQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-s~sH~LsGHr~~vlaV~Wsp~~--e~vLat 206 (397)
T KOG4283|consen 134 LQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-SFSHTLSGHRDGVLAVEWSPSS--EWVLAT 206 (397)
T ss_pred ceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCC-cceeeeccccCceEEEEeccCc--eeEEEe
Confidence 334456666 577888888885 579999999988887666554 7899999889999999999999 999976
No 192
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families. It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.
Probab=20.40 E-value=97 Score=21.93 Aligned_cols=48 Identities=15% Similarity=0.263 Sum_probs=32.6
Q ss_pred EE-eeCCCceecCCCCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceec
Q 043355 24 VY-IQYPPLRCSIPESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDS 76 (143)
Q Consensus 24 ~~-i~~~plR~~~~~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~fr 76 (143)
.| +.-||+.+..+++..|-|.-. +..+...+..++..++...++..|.
T Consensus 23 ~f~~~kP~~~i~~~dI~~v~feRv-----~~~~~ktFDl~v~~k~~~~~~~~fs 71 (95)
T PF08512_consen 23 LFGLEKPPFVIPLDDIESVEFERV-----SSFSSKTFDLVVILKDYEGPPHEFS 71 (95)
T ss_dssp EEECSSS-EEEEGGGEEEEEEE-------ESSSSSEEEEEEEETT-TS-EEEEE
T ss_pred EEecCCCeEEEEhhHeeEEEEEec-----ccCcceEEEEEEEEecCCCCcEEEe
Confidence 45 667889999999888888765 6677888888886665445666665
No 193
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=20.39 E-value=3.8e+02 Score=24.11 Aligned_cols=54 Identities=20% Similarity=0.194 Sum_probs=40.7
Q ss_pred eCCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEc
Q 043355 44 DDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIR 108 (143)
Q Consensus 44 DDank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~ 108 (143)
||++=++|-.|.+.-..+-. +.+ .-.+|-|+.||.-+|+|=.-..+..+..|.-
T Consensus 249 DD~tcRlyDlRaD~~~a~ys--~~~---------~~~gitSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 249 DDATCRLYDLRADQELAVYS--HDS---------IICGITSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred CCceeEEEeecCCcEEeeec--cCc---------ccCCceeEEEcccccEEEeeecCCceeEeec
Confidence 77777777777776444433 111 2458899999999999999999999998876
No 194
>PF06519 TolA: TolA C-terminal; InterPro: IPR014161 TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cut-offs are based largely on conserved operon structure. The Tol-Pal complex is required for maintaining outer membrane integrity, and is also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins OmpC, PhoE and LamB.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2X9A_D 3QDP_A 3QDR_A 1TOL_A 1S62_A.
Probab=20.21 E-value=99 Score=22.33 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=15.2
Q ss_pred eeEEEecCCCcEEEEecC
Q 043355 82 ILSIRFSLDTKLIAIQRS 99 (143)
Q Consensus 82 I~sIKFS~D~KiLAIQRs 99 (143)
.+.|++++||+++.++..
T Consensus 40 ~v~i~l~~dG~v~~v~~~ 57 (96)
T PF06519_consen 40 RVRIRLAPDGLVLSVTVE 57 (96)
T ss_dssp EEEEEEETTSEEEEEEEE
T ss_pred EEEEEECCCCcEEEeeec
Confidence 378999999999998864
No 195
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=20.16 E-value=4.1e+02 Score=27.08 Aligned_cols=80 Identities=15% Similarity=0.225 Sum_probs=56.5
Q ss_pred EeeCCCceecCCCCcceeEeCCCcEEEEEcC--CCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCe
Q 043355 25 YIQYPPLRCSIPESRGLHYDDGTKLLISSTS--NQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSE 102 (143)
Q Consensus 25 ~i~~~plR~~~~~~~~vFyDDank~v~avrs--ggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~s 102 (143)
|=.+-=||++..++..|=|+. +..+++--+ +-+.=|.-+.+ +....++--.|.|+.+-|-|=+|++|.|=.+++
T Consensus 119 wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF---~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrt 194 (942)
T KOG0973|consen 119 WKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTF---ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRT 194 (942)
T ss_pred eeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccc---eeeeeeecccccccceEECCccCeeeeecCCce
Confidence 445556899999999999998 555665434 22222333222 222333336679999999999999999999999
Q ss_pred EEEEEc
Q 043355 103 IQFWIR 108 (143)
Q Consensus 103 VEFvn~ 108 (143)
|-++.-
T Consensus 195 ikvwrt 200 (942)
T KOG0973|consen 195 LKVWRT 200 (942)
T ss_pred EEEEEc
Confidence 999984
Done!