Query 043355
Match_columns 143
No_of_seqs 56 out of 58
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 06:47:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gxr_A ESG1, transducin-like e 97.5 0.0077 2.6E-07 44.7 15.1 105 35-141 51-158 (337)
2 4gga_A P55CDC, cell division c 97.2 0.0042 1.4E-07 49.7 11.4 102 25-130 88-197 (420)
3 3zwl_B Eukaryotic translation 97.2 0.027 9.2E-07 42.2 14.7 100 35-141 32-132 (369)
4 4ggc_A P55CDC, cell division c 97.1 0.009 3.1E-07 44.2 11.7 101 24-130 7-117 (318)
5 1pgu_A Actin interacting prote 97.1 0.02 6.7E-07 46.6 14.2 109 28-140 10-132 (615)
6 1gxr_A ESG1, transducin-like e 97.0 0.038 1.3E-06 40.9 13.9 96 38-141 227-323 (337)
7 1nr0_A Actin interacting prote 97.0 0.03 1E-06 47.6 15.1 95 37-134 20-115 (611)
8 3f3f_A Nucleoporin SEH1; struc 96.9 0.035 1.2E-06 40.6 13.2 99 35-133 11-121 (351)
9 1k8k_C P40, ARP2/3 complex 41 96.9 0.026 8.9E-07 42.7 12.8 105 34-141 7-113 (372)
10 4ery_A WD repeat-containing pr 96.8 0.078 2.7E-06 39.9 14.3 99 36-140 24-123 (312)
11 2ynn_A Coatomer subunit beta'; 96.8 0.04 1.4E-06 42.1 12.8 94 36-132 56-150 (304)
12 3ow8_A WD repeat-containing pr 96.7 0.073 2.5E-06 41.4 14.2 97 38-140 125-222 (321)
13 1got_B GT-beta; complex (GTP-b 96.7 0.12 4E-06 40.1 15.2 98 34-134 54-155 (340)
14 4h5i_A Guanine nucleotide-exch 96.7 0.014 4.9E-07 46.5 10.1 57 78-134 268-324 (365)
15 3odt_A Protein DOA1; ubiquitin 96.7 0.042 1.4E-06 40.3 12.0 93 34-130 17-112 (313)
16 1k8k_C P40, ARP2/3 complex 41 96.6 0.051 1.7E-06 41.1 12.4 101 35-140 52-158 (372)
17 3zwl_B Eukaryotic translation 96.6 0.059 2E-06 40.3 12.5 99 37-141 177-276 (369)
18 1pgu_A Actin interacting prote 96.6 0.045 1.5E-06 44.4 12.6 98 34-134 487-596 (615)
19 3mmy_A MRNA export factor; mRN 96.6 0.086 2.9E-06 39.4 13.2 93 34-131 38-136 (368)
20 1r5m_A SIR4-interacting protei 96.5 0.051 1.7E-06 41.5 12.0 100 36-141 290-411 (425)
21 4ery_A WD repeat-containing pr 96.5 0.14 4.9E-06 38.5 14.3 99 37-140 109-208 (312)
22 1r5m_A SIR4-interacting protei 96.4 0.15 5.2E-06 38.8 13.8 103 35-141 45-166 (425)
23 3jrp_A Fusion protein of prote 96.4 0.086 2.9E-06 39.7 12.2 101 32-133 8-112 (379)
24 2ynn_A Coatomer subunit beta'; 96.4 0.11 3.8E-06 39.6 13.0 100 35-140 13-113 (304)
25 3mkq_A Coatomer beta'-subunit; 96.4 0.085 2.9E-06 44.9 13.4 100 35-140 13-113 (814)
26 3lrv_A PRE-mRNA-splicing facto 96.3 0.078 2.7E-06 41.0 12.0 99 37-141 127-231 (343)
27 4a11_B DNA excision repair pro 96.3 0.17 5.7E-06 38.5 13.6 74 36-111 187-277 (408)
28 3mkq_A Coatomer beta'-subunit; 96.3 0.094 3.2E-06 44.6 13.3 94 36-132 56-150 (814)
29 4gqb_B Methylosome protein 50; 96.2 0.089 3.1E-06 41.9 12.3 93 37-134 84-181 (344)
30 3k26_A Polycomb protein EED; W 96.2 0.23 7.9E-06 37.1 13.8 99 37-140 71-177 (366)
31 3k26_A Polycomb protein EED; W 96.2 0.11 3.7E-06 38.9 11.8 94 37-134 20-128 (366)
32 4g56_B MGC81050 protein; prote 96.2 0.14 4.8E-06 40.4 12.9 97 36-134 95-193 (357)
33 3dwl_C Actin-related protein 2 96.1 0.07 2.4E-06 40.9 10.8 107 32-140 52-162 (377)
34 2xyi_A Probable histone-bindin 96.1 0.092 3.1E-06 42.2 11.8 104 36-141 232-338 (430)
35 3odt_A Protein DOA1; ubiquitin 96.1 0.26 8.9E-06 36.0 13.6 96 37-140 186-282 (313)
36 3dwl_C Actin-related protein 2 96.1 0.031 1.1E-06 42.9 8.5 99 35-134 11-112 (377)
37 2ojh_A Uncharacterized protein 96.0 0.2 6.9E-06 35.8 12.2 97 38-141 87-189 (297)
38 3mmy_A MRNA export factor; mRN 96.0 0.068 2.3E-06 39.9 10.0 62 78-141 38-103 (368)
39 1yfq_A Cell cycle arrest prote 96.0 0.11 3.6E-06 38.9 11.0 95 36-132 12-111 (342)
40 3i2n_A WD repeat-containing pr 96.0 0.098 3.4E-06 39.1 10.8 101 36-141 210-338 (357)
41 1sq9_A Antiviral protein SKI8; 96.0 0.25 8.5E-06 37.9 13.2 99 35-140 186-307 (397)
42 3fm0_A Protein CIAO1; WDR39,SG 96.0 0.19 6.7E-06 39.1 12.8 100 35-134 105-206 (345)
43 3ow8_A WD repeat-containing pr 96.0 0.4 1.4E-05 37.2 14.5 94 37-134 208-302 (321)
44 2aq5_A Coronin-1A; WD40 repeat 96.0 0.36 1.2E-05 37.8 14.4 104 31-134 77-188 (402)
45 1sq9_A Antiviral protein SKI8; 95.9 0.31 1.1E-05 37.3 13.6 94 36-133 234-365 (397)
46 4aez_A CDC20, WD repeat-contai 95.9 0.22 7.6E-06 39.3 13.1 79 48-130 104-184 (401)
47 2ymu_A WD-40 repeat protein; u 95.9 0.24 8.4E-06 40.2 13.5 97 37-140 346-442 (577)
48 2ymu_A WD-40 repeat protein; u 95.9 0.18 6.3E-06 40.9 12.7 96 37-140 469-565 (577)
49 3f3f_A Nucleoporin SEH1; struc 95.8 0.26 8.8E-06 36.0 12.1 71 38-111 170-250 (351)
50 2pm9_A Protein WEB1, protein t 95.8 0.15 5.3E-06 39.2 11.3 96 34-132 164-272 (416)
51 3fm0_A Protein CIAO1; WDR39,SG 95.8 0.23 8E-06 38.6 12.4 97 36-134 62-162 (345)
52 2vdu_B TRNA (guanine-N(7)-)-me 95.7 0.23 8E-06 39.9 12.4 98 36-134 150-252 (450)
53 3sfz_A APAF-1, apoptotic pepti 95.6 0.27 9.4E-06 44.4 13.9 94 36-133 616-710 (1249)
54 2xyi_A Probable histone-bindin 95.5 0.17 5.9E-06 40.6 11.1 97 36-134 278-390 (430)
55 3scy_A Hypothetical bacterial 95.5 0.59 2E-05 35.9 13.6 104 37-142 156-276 (361)
56 3jrp_A Fusion protein of prote 95.4 0.57 2E-05 35.1 14.5 97 36-133 102-217 (379)
57 3vl1_A 26S proteasome regulato 95.4 0.24 8.1E-06 38.4 11.2 56 78-134 138-193 (420)
58 3vl1_A 26S proteasome regulato 95.4 0.27 9.3E-06 38.1 11.5 94 36-132 248-345 (420)
59 2pm9_A Protein WEB1, protein t 95.4 0.37 1.3E-05 37.0 12.2 96 36-134 215-317 (416)
60 3i2n_A WD repeat-containing pr 95.4 0.2 6.9E-06 37.4 10.3 95 35-132 18-121 (357)
61 1got_B GT-beta; complex (GTP-b 95.3 0.55 1.9E-05 36.3 13.1 93 37-134 145-238 (340)
62 4aez_A CDC20, WD repeat-contai 95.3 0.2 6.7E-06 39.5 10.6 93 37-134 178-271 (401)
63 1nr0_A Actin interacting prote 95.3 0.29 1E-05 41.5 12.3 57 78-134 535-593 (611)
64 3vgz_A Uncharacterized protein 95.3 0.46 1.6E-05 35.6 12.0 102 37-142 42-158 (353)
65 3frx_A Guanine nucleotide-bind 95.3 0.41 1.4E-05 36.8 12.1 103 31-134 13-119 (319)
66 2aq5_A Coronin-1A; WD40 repeat 95.2 0.48 1.6E-05 37.1 12.6 101 36-141 132-237 (402)
67 1vyh_C Platelet-activating fac 95.2 0.54 1.8E-05 37.7 13.1 95 36-134 109-204 (410)
68 2ojh_A Uncharacterized protein 95.2 0.34 1.2E-05 34.6 10.7 56 78-134 171-228 (297)
69 3vu4_A KMHSV2; beta-propeller 95.1 0.19 6.7E-06 39.5 10.1 62 77-140 193-256 (355)
70 1yfq_A Cell cycle arrest prote 95.1 0.48 1.6E-05 35.3 11.7 93 38-134 153-263 (342)
71 3u4y_A Uncharacterized protein 95.0 0.49 1.7E-05 35.5 11.5 69 40-113 2-74 (331)
72 4g56_B MGC81050 protein; prote 94.9 0.34 1.2E-05 38.2 11.0 89 38-131 229-320 (357)
73 3ei3_B DNA damage-binding prot 94.9 0.71 2.4E-05 35.5 12.4 96 36-134 74-175 (383)
74 3vgz_A Uncharacterized protein 94.8 0.32 1.1E-05 36.5 10.1 98 38-142 143-248 (353)
75 4a11_B DNA excision repair pro 94.8 0.95 3.2E-05 34.3 13.9 88 49-141 158-262 (408)
76 4gqb_B Methylosome protein 50; 94.7 0.64 2.2E-05 36.9 12.1 92 38-134 217-311 (344)
77 3dw8_B Serine/threonine-protei 94.7 0.16 5.3E-06 39.7 8.3 57 78-134 27-105 (447)
78 1erj_A Transcriptional repress 94.6 1.3 4.4E-05 35.0 14.8 53 81-134 125-177 (393)
79 3bws_A Protein LP49; two-domai 94.6 0.57 1.9E-05 36.5 11.4 101 38-142 125-229 (433)
80 3ei3_B DNA damage-binding prot 94.6 1.1 3.9E-05 34.4 13.9 97 37-140 165-267 (383)
81 1l0q_A Surface layer protein; 94.6 0.84 2.9E-05 35.0 12.2 96 38-142 34-133 (391)
82 3dm0_A Maltose-binding peripla 94.5 0.65 2.2E-05 39.7 12.4 103 31-134 378-484 (694)
83 3hfq_A Uncharacterized protein 94.5 1.2 4E-05 33.9 13.6 105 36-142 86-204 (347)
84 2hqs_A Protein TOLB; TOLB, PAL 94.4 0.74 2.5E-05 37.3 12.1 61 78-141 221-284 (415)
85 1ri6_A Putative isomerase YBHE 94.4 0.56 1.9E-05 34.7 10.4 101 37-142 39-146 (343)
86 2pm7_B Protein transport prote 94.4 0.22 7.7E-06 37.8 8.4 55 78-132 8-63 (297)
87 2hqs_A Protein TOLB; TOLB, PAL 94.3 0.84 2.9E-05 37.0 12.2 55 78-134 177-234 (415)
88 4h5i_A Guanine nucleotide-exch 94.3 0.63 2.2E-05 36.8 11.2 56 78-134 175-231 (365)
89 3azo_A Aminopeptidase; POP fam 94.2 0.42 1.4E-05 40.1 10.5 63 79-143 187-260 (662)
90 3bg1_A Protein SEC13 homolog; 94.1 0.17 5.8E-06 38.9 7.3 55 78-132 12-67 (316)
91 3sfz_A APAF-1, apoptotic pepti 94.1 0.64 2.2E-05 42.0 12.0 94 37-134 800-894 (1249)
92 3gre_A Serine/threonine-protei 94.1 0.88 3E-05 35.7 11.5 83 47-132 182-267 (437)
93 3jro_A Fusion protein of prote 93.9 0.62 2.1E-05 40.9 11.4 98 35-133 9-110 (753)
94 2hes_X YDR267CP; beta-propelle 93.9 1.7 5.9E-05 33.4 13.2 98 37-134 60-165 (330)
95 1l0q_A Surface layer protein; 93.8 1.3 4.3E-05 34.0 11.7 97 37-142 75-175 (391)
96 2oit_A Nucleoporin 214KDA; NH2 93.8 0.64 2.2E-05 38.4 10.7 100 35-141 149-257 (434)
97 3iz6_a 40S ribosomal protein R 93.8 1.4 4.7E-05 34.7 12.2 39 75-113 245-283 (380)
98 1ri6_A Putative isomerase YBHE 93.8 1.5 5.1E-05 32.4 13.5 104 37-142 130-248 (343)
99 3bws_A Protein LP49; two-domai 93.7 1.3 4.6E-05 34.4 11.9 96 38-142 305-418 (433)
100 3lrv_A PRE-mRNA-splicing facto 93.7 1.3 4.6E-05 33.9 11.8 72 37-111 172-245 (343)
101 2hes_X YDR267CP; beta-propelle 93.6 1.9 6.5E-05 33.1 13.0 98 36-133 108-208 (330)
102 3hfq_A Uncharacterized protein 93.6 1.8 6.2E-05 32.8 13.1 102 38-142 143-257 (347)
103 1vyh_C Platelet-activating fac 93.6 1.9 6.5E-05 34.4 12.9 95 36-134 151-246 (410)
104 3dw8_B Serine/threonine-protei 93.6 0.78 2.7E-05 35.7 10.2 105 34-141 176-302 (447)
105 4aow_A Guanine nucleotide-bind 93.5 1.7 5.7E-05 32.2 12.5 99 34-133 37-139 (340)
106 3vu4_A KMHSV2; beta-propeller 93.4 1.5 5.3E-05 34.2 11.9 75 34-111 194-272 (355)
107 2z3z_A Dipeptidyl aminopeptida 93.3 0.27 9.2E-06 41.6 7.7 69 36-110 82-150 (706)
108 2vdu_B TRNA (guanine-N(7)-)-me 93.2 2.6 9E-05 33.7 14.2 103 34-142 194-325 (450)
109 2pbi_B Guanine nucleotide-bind 93.2 2.4 8.3E-05 33.1 13.2 53 81-134 286-338 (354)
110 3u4y_A Uncharacterized protein 93.1 1.4 4.7E-05 32.9 10.7 96 40-142 44-145 (331)
111 4e54_B DNA damage-binding prot 93.0 0.65 2.2E-05 37.2 9.2 95 37-134 121-221 (435)
112 3scy_A Hypothetical bacterial 92.9 1.4 4.7E-05 33.8 10.6 101 38-142 213-323 (361)
113 3o4h_A Acylamino-acid-releasin 92.8 0.18 6.1E-06 42.0 5.9 60 78-141 20-80 (582)
114 1jmx_B Amine dehydrogenase; ox 92.8 1.1 3.7E-05 33.3 9.6 60 81-142 44-109 (349)
115 2pbi_B Guanine nucleotide-bind 92.8 2.8 9.5E-05 32.7 12.7 98 34-134 63-166 (354)
116 2z3z_A Dipeptidyl aminopeptida 92.8 1.1 3.7E-05 37.9 10.7 97 38-134 123-269 (706)
117 3gre_A Serine/threonine-protei 92.5 0.24 8.3E-06 38.9 6.0 61 78-140 62-127 (437)
118 2xdw_A Prolyl endopeptidase; a 92.3 1.8 6.2E-05 37.3 11.7 62 79-143 232-305 (710)
119 2ecf_A Dipeptidyl peptidase IV 92.1 1.3 4.6E-05 37.5 10.4 73 38-112 111-183 (741)
120 3iz6_a 40S ribosomal protein R 92.0 3.6 0.00012 32.2 12.4 96 36-134 250-356 (380)
121 3iuj_A Prolyl endopeptidase; h 91.9 2.9 9.9E-05 36.4 12.6 60 81-143 235-299 (693)
122 3frx_A Guanine nucleotide-bind 91.9 3.3 0.00011 31.6 12.9 55 78-134 195-249 (319)
123 2gop_A Trilobed protease; beta 91.8 2 6.9E-05 32.4 10.2 58 80-141 59-121 (347)
124 2oaj_A Protein SNI1; WD40 repe 91.8 3.8 0.00013 37.3 13.7 97 36-141 18-115 (902)
125 2xzm_R RACK1; ribosome, transl 91.7 3.5 0.00012 31.6 14.2 103 31-134 17-130 (343)
126 3jro_A Fusion protein of prote 91.7 5.3 0.00018 35.0 14.1 97 36-133 100-215 (753)
127 1pby_B Quinohemoprotein amine 91.6 2 6.9E-05 31.6 9.7 92 38-134 36-146 (337)
128 3o4h_A Acylamino-acid-releasin 91.4 0.4 1.4E-05 39.9 6.3 37 78-114 193-231 (582)
129 3v7d_B Cell division control p 91.2 2.4 8.3E-05 33.4 10.5 88 36-131 353-442 (464)
130 4e54_B DNA damage-binding prot 91.2 0.61 2.1E-05 37.3 7.0 54 79-132 119-174 (435)
131 2pm7_B Protein transport prote 91.1 3.9 0.00013 30.8 13.9 97 36-133 10-110 (297)
132 1k32_A Tricorn protease; prote 91.0 2.9 0.0001 37.9 12.1 64 75-142 48-124 (1045)
133 1erj_A Transcriptional repress 90.9 4.9 0.00017 31.6 14.1 61 78-140 205-272 (393)
134 3pe7_A Oligogalacturonate lyas 90.8 2.9 9.9E-05 31.9 10.3 33 81-113 82-114 (388)
135 2oaj_A Protein SNI1; WD40 repe 90.7 5.3 0.00018 36.4 13.5 54 77-131 573-631 (902)
136 4gq1_A NUP37; propeller, trans 90.5 1.1 3.8E-05 35.6 7.9 65 38-107 319-386 (393)
137 2xdw_A Prolyl endopeptidase; a 90.3 2.2 7.5E-05 36.8 10.2 52 81-134 126-182 (710)
138 1yr2_A Prolyl oligopeptidase; 89.6 4 0.00014 35.5 11.3 60 81-143 269-335 (741)
139 3dm0_A Maltose-binding peripla 89.1 7.7 0.00026 33.0 12.5 97 34-133 429-528 (694)
140 2ecf_A Dipeptidyl peptidase IV 88.7 2 6.9E-05 36.4 8.6 19 82-100 211-229 (741)
141 2bkl_A Prolyl endopeptidase; m 88.7 6 0.0002 34.1 11.7 98 39-143 171-289 (695)
142 3v7d_B Cell division control p 88.2 8.1 0.00028 30.4 13.6 88 38-132 125-213 (464)
143 1jof_A Carboxy-CIS,CIS-muconat 88.2 7.8 0.00027 30.1 12.8 61 80-142 145-210 (365)
144 3e5z_A Putative gluconolactona 88.0 2.9 0.0001 31.2 8.3 70 38-112 30-101 (296)
145 1pby_B Quinohemoprotein amine 87.9 3.1 0.00011 30.6 8.2 72 38-114 243-314 (337)
146 2j04_A TAU60, YPL007P, hypothe 87.8 4.7 0.00016 36.5 10.8 53 81-133 131-193 (588)
147 4aow_A Guanine nucleotide-bind 87.7 6.7 0.00023 28.8 12.4 98 34-133 85-182 (340)
148 2gop_A Trilobed protease; beta 87.3 2.5 8.4E-05 31.9 7.5 18 82-99 106-123 (347)
149 1k32_A Tricorn protease; prote 87.0 3.9 0.00013 37.1 9.9 55 78-134 419-483 (1045)
150 1nir_A Nitrite reductase; hemo 86.9 8.3 0.00028 32.8 11.5 59 81-143 180-244 (543)
151 2xe4_A Oligopeptidase B; hydro 86.8 8.2 0.00028 34.2 11.7 69 73-143 263-338 (751)
152 1z68_A Fibroblast activation p 86.7 1.7 6E-05 36.8 7.0 33 80-113 110-142 (719)
153 2oit_A Nucleoporin 214KDA; NH2 86.5 2.6 8.8E-05 34.7 7.8 55 79-134 149-204 (434)
154 1xfd_A DIP, dipeptidyl aminope 85.6 6.2 0.00021 33.2 9.8 32 81-113 115-146 (723)
155 1q7f_A NHL, brain tumor CG1071 85.6 8.9 0.0003 28.1 13.2 94 38-134 79-175 (286)
156 1xfd_A DIP, dipeptidyl aminope 85.0 8.1 0.00028 32.5 10.2 18 82-99 175-192 (723)
157 3dsm_A Uncharacterized protein 84.6 8.6 0.00029 29.8 9.7 60 81-143 173-243 (328)
158 1nir_A Nitrite reductase; hemo 84.6 6.2 0.00021 33.6 9.5 35 78-112 419-460 (543)
159 3bg1_A Protein SEC13 homolog; 84.6 6.8 0.00023 29.8 8.9 97 36-133 14-114 (316)
160 1p22_A F-BOX/WD-repeat protein 84.2 14 0.00047 29.2 12.5 86 38-131 136-222 (435)
161 2xzm_R RACK1; ribosome, transl 84.2 12 0.00042 28.5 13.1 92 37-134 120-225 (343)
162 3fvz_A Peptidyl-glycine alpha- 83.6 7.7 0.00026 29.9 8.9 24 78-101 22-45 (329)
163 1jof_A Carboxy-CIS,CIS-muconat 82.2 6.5 0.00022 30.6 8.0 101 37-142 41-162 (365)
164 2bkl_A Prolyl endopeptidase; m 82.0 6.6 0.00022 33.8 8.7 52 83-134 171-238 (695)
165 2j04_A TAU60, YPL007P, hypothe 81.9 3.7 0.00013 37.2 7.3 59 79-141 85-146 (588)
166 1jmx_B Amine dehydrogenase; ox 81.8 6.6 0.00022 29.0 7.6 37 80-116 295-331 (349)
167 4gq1_A NUP37; propeller, trans 81.7 5.5 0.00019 31.5 7.6 55 79-134 136-198 (393)
168 3c5m_A Oligogalacturonate lyas 79.3 3.4 0.00012 31.3 5.4 29 84-112 85-113 (396)
169 1qks_A Cytochrome CD1 nitrite 78.1 31 0.001 30.0 11.7 83 43-131 163-248 (567)
170 1z68_A Fibroblast activation p 76.6 9.9 0.00034 32.2 8.0 17 83-99 172-188 (719)
171 1yr2_A Prolyl oligopeptidase; 76.5 7.7 0.00026 33.7 7.4 52 82-134 211-279 (741)
172 3pe7_A Oligogalacturonate lyas 76.5 6.9 0.00024 29.8 6.4 61 80-142 188-256 (388)
173 1q7f_A NHL, brain tumor CG1071 76.0 20 0.0007 26.1 13.6 55 80-134 207-262 (286)
174 3sjl_D Methylamine dehydrogena 75.8 11 0.00039 31.7 8.2 77 35-113 279-366 (386)
175 4a5s_A Dipeptidyl peptidase 4 75.1 16 0.00053 31.7 9.0 35 78-113 110-144 (740)
176 3iuj_A Prolyl endopeptidase; h 74.5 9.3 0.00032 33.2 7.4 57 83-142 178-251 (693)
177 4gga_A P55CDC, cell division c 73.8 30 0.001 27.1 14.8 99 34-134 229-332 (420)
178 2j04_B YDR362CP, TAU91; beta p 68.4 32 0.0011 29.3 9.3 71 38-111 269-343 (524)
179 3mep_A Uncharacterized protein 67.6 6.2 0.00021 30.0 4.3 50 43-92 89-139 (198)
180 3fvz_A Peptidyl-glycine alpha- 67.5 39 0.0013 25.8 10.6 32 82-113 198-230 (329)
181 1xip_A Nucleoporin NUP159; bet 67.0 41 0.0014 28.2 9.6 95 28-134 79-174 (388)
182 2mad_H Methylamine dehydrogena 65.6 27 0.00091 28.2 7.9 74 41-116 272-356 (373)
183 2oiz_A Aromatic amine dehydrog 63.9 16 0.00054 28.9 6.1 29 82-111 307-335 (361)
184 3azo_A Aminopeptidase; POP fam 63.6 41 0.0014 28.0 8.8 32 79-110 129-170 (662)
185 3c5m_A Oligogalacturonate lyas 63.0 30 0.001 26.0 7.3 33 81-113 239-276 (396)
186 1p22_A F-BOX/WD-repeat protein 62.7 54 0.0018 25.7 13.1 88 36-130 174-264 (435)
187 2dg1_A DRP35, lactonase; beta 62.0 46 0.0016 24.7 9.7 58 81-141 46-103 (333)
188 3o12_A Uncharacterized protein 61.5 8.7 0.0003 30.1 4.1 50 43-92 118-168 (221)
189 2mad_H Methylamine dehydrogena 59.9 66 0.0023 25.8 10.3 58 84-143 70-143 (373)
190 2ovr_B FBW7, F-BOX/WD repeat p 59.6 61 0.0021 25.3 13.9 87 36-130 200-287 (445)
191 4ggc_A P55CDC, cell division c 57.0 52 0.0018 23.7 14.2 56 78-133 149-207 (318)
192 1mda_H Methylamine dehydrogena 56.3 58 0.002 26.8 8.5 72 41-114 269-350 (368)
193 3dr2_A Exported gluconolactona 53.2 69 0.0024 24.0 8.4 65 40-109 49-115 (305)
194 2w18_A PALB2, fancn, partner a 51.8 14 0.00049 31.3 4.1 28 81-108 328-355 (356)
195 3c75_H MADH, methylamine dehyd 50.6 61 0.0021 27.4 7.9 77 38-116 321-408 (426)
196 2eqk_A Tudor domain-containing 49.8 32 0.0011 23.9 5.0 39 74-113 19-62 (85)
197 1tl2_A L10, protein (tachylect 49.6 30 0.001 28.0 5.6 57 39-101 91-155 (236)
198 4a5s_A Dipeptidyl peptidase 4 49.4 87 0.003 27.0 8.8 16 83-98 174-189 (740)
199 1xip_A Nucleoporin NUP159; bet 47.5 88 0.003 26.1 8.3 57 81-141 164-230 (388)
200 3hrp_A Uncharacterized protein 46.4 1E+02 0.0034 25.0 8.4 33 81-113 132-164 (409)
201 2z2n_A Virginiamycin B lyase; 46.3 77 0.0026 22.6 14.2 95 38-141 185-282 (299)
202 3no2_A Uncharacterized protein 45.1 99 0.0034 23.5 12.6 54 44-112 11-66 (276)
203 3dsm_A Uncharacterized protein 44.7 1E+02 0.0035 23.5 10.1 36 75-112 219-255 (328)
204 3l6v_A GYRA, DNA gyrase subuni 44.7 1.3E+02 0.0046 24.9 10.0 59 37-100 151-209 (370)
205 1pjx_A Dfpase, DIISOPROPYLFLUO 44.5 88 0.003 22.7 10.1 60 80-142 226-285 (314)
206 2oiz_A Aromatic amine dehydrog 44.4 47 0.0016 26.1 5.9 31 81-111 109-141 (361)
207 2w18_A PALB2, fancn, partner a 44.0 46 0.0016 28.1 6.1 55 79-133 111-191 (356)
208 2dg1_A DRP35, lactonase; beta 43.5 97 0.0033 22.9 14.2 69 38-111 47-122 (333)
209 2j04_B YDR362CP, TAU91; beta p 41.7 1.6E+02 0.0055 24.9 12.6 55 74-129 261-315 (524)
210 2ovr_B FBW7, F-BOX/WD repeat p 38.3 1.4E+02 0.0048 23.2 14.0 85 38-130 122-207 (445)
211 2xe4_A Oligopeptidase B; hydro 38.1 29 0.00098 30.7 4.0 31 81-111 175-211 (751)
212 3c75_H MADH, methylamine dehyd 37.2 1.6E+02 0.0055 24.8 8.5 30 82-111 179-210 (426)
213 3e5z_A Putative gluconolactona 33.1 1.4E+02 0.0048 21.8 10.3 32 80-111 172-204 (296)
214 1pjx_A Dfpase, DIISOPROPYLFLUO 32.0 1.4E+02 0.0049 21.5 10.3 66 38-109 228-298 (314)
215 3ka5_A Ribosome-associated pro 26.3 77 0.0026 20.8 3.7 25 39-63 29-55 (65)
216 2z2n_A Virginiamycin B lyase; 23.5 2E+02 0.0068 20.3 14.1 70 37-111 100-171 (299)
217 3lyv_A Ribosome-associated fac 22.8 72 0.0024 21.0 3.0 25 39-63 30-56 (66)
218 1tl2_A L10, protein (tachylect 21.7 83 0.0028 25.5 3.8 21 36-58 41-61 (236)
219 1rwi_B Serine/threonine-protei 21.4 2.2E+02 0.0075 20.0 12.1 92 37-134 151-245 (270)
220 2rq6_A ATP synthase epsilon ch 21.0 1.1E+02 0.0038 22.1 4.1 47 31-82 3-49 (138)
221 3k2t_A LMO2511 protein; lister 20.9 88 0.003 19.9 3.0 25 39-63 29-55 (57)
222 1mda_H Methylamine dehydrogena 20.7 1.5E+02 0.0053 24.2 5.3 35 78-114 65-109 (368)
223 1bpo_A Protein (clathrin); cla 20.6 4.6E+02 0.016 23.4 9.8 55 84-143 70-124 (494)
224 3g4e_A Regucalcin; six bladed 20.3 2.7E+02 0.0091 20.6 12.7 65 40-111 17-83 (297)
No 1
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.51 E-value=0.0077 Score=44.70 Aligned_cols=105 Identities=8% Similarity=0.050 Sum_probs=73.5
Q ss_pred CCCCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecC--CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCc
Q 043355 35 IPESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSI--PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSE 112 (143)
Q Consensus 35 ~~~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~fri--d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~ 112 (143)
...++.+-|....+.|++...|.+.=|.+...........+.. .+++|.++.||||+++|++--.+..|.+++.+++.
T Consensus 51 ~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 130 (337)
T 1gxr_A 51 GEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130 (337)
T ss_dssp SSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-
T ss_pred CCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC
Confidence 3458888999888888887645555566632222222333332 55699999999999999999999999999998774
Q ss_pred -eEEEEecCCCCcEEEEEeccCCCceEEEE
Q 043355 113 -AFSHRCRSDSENILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 113 -~~~q~cK~k~~~IlGF~Wt~~~~cdivlV 141 (143)
......+.....|.+..|.... +.+++
T Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~~--~~l~~ 158 (337)
T 1gxr_A 131 PRIKAELTSSAPACYALAISPDS--KVCFS 158 (337)
T ss_dssp -EEEEEEECSSSCEEEEEECTTS--SEEEE
T ss_pred cceeeecccCCCceEEEEECCCC--CEEEE
Confidence 3444555566779999998765 55443
No 2
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=97.23 E-value=0.0042 Score=49.73 Aligned_cols=102 Identities=22% Similarity=0.354 Sum_probs=68.9
Q ss_pred EeeCCCcee-cCCCCcceeE----eCCCcEEEEEcCCC-eEEEEEccCCCCCCCceecC--CCCceeEEEecCCCcEEEE
Q 043355 25 YIQYPPLRC-SIPESRGLHY----DDGTKLLISSTSNQ-IFSWKTVPFNPLATSTSDSI--PEGPILSIRFSLDTKLIAI 96 (143)
Q Consensus 25 ~i~~~plR~-~~~~~~~vFy----DDank~v~avrsgg-v~gv~v~~~~p~~~~~~fri--d~G~I~sIKFS~D~KiLAI 96 (143)
+|+.-|.|. ++|++..=|| |=+..-++||-.++ +.=|.+ .+ .+....+.+ ..+.|.+++||||+++||+
T Consensus 88 ~i~~~p~~~l~ap~~~~d~y~~~l~wS~~n~lAvgld~tV~lWd~--~t-g~~~~~~~~~~~~~~V~sv~fspdg~~las 164 (420)
T 4gga_A 88 YIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSA--SS-GDILQLLQMEQPGEYISSVAWIKEGNYLAV 164 (420)
T ss_dssp CCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEET--TT-CCEEEEEECCSTTCCEEEEEECTTSSEEEE
T ss_pred ccCCCCceEEECCCCcccccceeEEECCCCEEEEEeCCEEEEEEC--CC-CCEEEEEEecCCCCcEEEEEECCCCCEEEE
Confidence 577778886 8888876665 22333478885555 333444 21 111123444 3448999999999999999
Q ss_pred ecCCCeEEEEEcCCCceEEEEecCCCCcEEEEEe
Q 043355 97 QRSSSEIQFWIRETSEAFSHRCRSDSENILGFFW 130 (143)
Q Consensus 97 QRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~W 130 (143)
--.+.+|.+++.+++... ...+.....+..+.|
T Consensus 165 gs~Dg~v~iWd~~~~~~~-~~~~~h~~~v~~~s~ 197 (420)
T 4gga_A 165 GTSSAEVQLWDVQQQKRL-RNMTSHSARVGSLSW 197 (420)
T ss_dssp EETTSCEEEEETTTTEEE-EEECCCSSCEEEEEE
T ss_pred EECCCeEEEEEcCCCcEE-EEEeCCCCceEEEee
Confidence 999999999999887543 344556677887777
No 3
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.027 Score=42.15 Aligned_cols=100 Identities=14% Similarity=0.223 Sum_probs=69.9
Q ss_pred CCCCcceeEeCCCcEEEEEcCCC-eEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCce
Q 043355 35 IPESRGLHYDDGTKLLISSTSNQ-IFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEA 113 (143)
Q Consensus 35 ~~~~~~vFyDDank~v~avrsgg-v~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~ 113 (143)
...++.+-|....+.|++-..+| +.=|.+ . ..+....+.-..++|.++.||||+++|+.--.+..|-+++..++..
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~--~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 108 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYS--L-NGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC 108 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSSCEEEEET--T-TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred eceEEEEEEcCCCCEEEEEeCCCEEEEEeC--C-CchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 44577788887666777665554 445555 2 1222233334677999999999999999999999999999988754
Q ss_pred EEEEecCCCCcEEEEEeccCCCceEEEE
Q 043355 114 FSHRCRSDSENILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 114 ~~q~cK~k~~~IlGF~Wt~~~~cdivlV 141 (143)
.... + ....|....|.... +.+++
T Consensus 109 ~~~~-~-~~~~v~~~~~~~~~--~~l~~ 132 (369)
T 3zwl_B 109 VATW-K-SPVPVKRVEFSPCG--NYFLA 132 (369)
T ss_dssp EEEE-E-CSSCEEEEEECTTS--SEEEE
T ss_pred EEEe-e-cCCCeEEEEEccCC--CEEEE
Confidence 3332 2 55679999998776 55544
No 4
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=97.13 E-value=0.009 Score=44.25 Aligned_cols=101 Identities=21% Similarity=0.357 Sum_probs=64.6
Q ss_pred EEeeCCCce-ecCCCCccee------EeCCCcEEEEEcCCCe-EEEEEccCCCCCCCceecC--CCCceeEEEecCCCcE
Q 043355 24 VYIQYPPLR-CSIPESRGLH------YDDGTKLLISSTSNQI-FSWKTVPFNPLATSTSDSI--PEGPILSIRFSLDTKL 93 (143)
Q Consensus 24 ~~i~~~plR-~~~~~~~~vF------yDDank~v~avrsggv-~gv~v~~~~p~~~~~~fri--d~G~I~sIKFS~D~Ki 93 (143)
-||+-.|.| +++|++..=| |-..| ++|+-.++. .=|.+ .+ .+....+.. ..+.|.+++||||+++
T Consensus 7 r~~p~~p~rvldap~~~~d~y~~~l~WS~~~--~lAvg~D~tV~iWd~--~t-g~~~~~~~~~~~~~~V~~v~~~~~~~~ 81 (318)
T 4ggc_A 7 RYIPSLPDRILDAPEIRNDYYLNLVDWSSGN--VLAVALDNSVYLWSA--SS-GDILQLLQMEQPGEYISSVAWIKEGNY 81 (318)
T ss_dssp CCCCSSCSEEEECTTCCCCTTCBCEEECTTS--EEEEEETTEEEEEET--TT-CCEEEEEECCSTTCCEEEEEECTTSSE
T ss_pred cccCCCCCEEeeCCCCcccccceEEEECCCC--EEEEEeCCEEEEEEC--CC-CCEEEEEEecCCCCeEEEEEECCCCCE
Confidence 378888988 5888865534 33333 778855552 23443 11 111223444 3448999999999999
Q ss_pred EEEecCCCeEEEEEcCCCceEEEEecCCCCcEEEEEe
Q 043355 94 IAIQRSSSEIQFWIRETSEAFSHRCRSDSENILGFFW 130 (143)
Q Consensus 94 LAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~W 130 (143)
||.--.+.+|.+++.+++... +..+.....+..+.+
T Consensus 82 l~sgs~Dg~v~iw~~~~~~~~-~~~~~h~~~~~~~~~ 117 (318)
T 4ggc_A 82 LAVGTSSAEVQLWDVQQQKRL-RNMTSHSARVGSLSW 117 (318)
T ss_dssp EEEEETTSEEEEEETTTTEEE-EEEECCSSCEEEEEE
T ss_pred EEEEECCCcEEEeecCCceeE-EEecCccceEEEeec
Confidence 999999999999999887433 233344455554443
No 5
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=97.09 E-value=0.02 Score=46.55 Aligned_cols=109 Identities=12% Similarity=0.105 Sum_probs=75.3
Q ss_pred CCCc-eecCCCCcceeEeCCCcEEEEEcCCCeEEEEEccCCCC---CCCceecCCCCc-eeEEEecC--CCcEEEEecCC
Q 043355 28 YPPL-RCSIPESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPL---ATSTSDSIPEGP-ILSIRFSL--DTKLIAIQRSS 100 (143)
Q Consensus 28 ~~pl-R~~~~~~~~vFyDDank~v~avrsggv~gv~v~~~~p~---~~~~~frid~G~-I~sIKFS~--D~KiLAIQRs~ 100 (143)
|||+ +.....++.+-|+...+.|.+...+.+.=|.+ .+.. +....+.-.+++ |.+++||| |+++||.--.+
T Consensus 10 ~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~--~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~d 87 (615)
T 1pgu_A 10 IPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCL--DDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDES 87 (615)
T ss_dssp ECCCCCCCTTCCCCCEEETTTTEEEEEETTEEEEEEC--CSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETT
T ss_pred cCCCCCCccCceeEEEECCCCCEEEEecCCeEEEEEC--CCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCC
Confidence 4444 33445588899999888777776554444555 2121 233444446678 99999999 99999999999
Q ss_pred CeEEEEEcCCC-------ceEEEEecCCCCcEEEEEeccCCCceEEE
Q 043355 101 SEIQFWIRETS-------EAFSHRCRSDSENILGFFWTDCPLCDFVV 140 (143)
Q Consensus 101 ~sVEFvn~~~~-------~~~~q~cK~k~~~IlGF~Wt~~~~cdivl 140 (143)
.+|.+++..++ ....+.-+.....|....|.... +.++
T Consensus 88 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~ 132 (615)
T 1pgu_A 88 GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG--RRLC 132 (615)
T ss_dssp SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS--SEEE
T ss_pred CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCC--CEEE
Confidence 99999999654 23344445566779999998775 4444
No 6
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.99 E-value=0.038 Score=40.90 Aligned_cols=96 Identities=13% Similarity=0.129 Sum_probs=66.4
Q ss_pred CcceeEeCCCcEEEEEcC-CCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEE
Q 043355 38 SRGLHYDDGTKLLISSTS-NQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSH 116 (143)
Q Consensus 38 ~~~vFyDDank~v~avrs-ggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q 116 (143)
+..+-|+...+.+++... +.+.-|.+ . ..+...+...+++|.++.||||+++|+.--.+..|.+++.+++.....
T Consensus 227 v~~~~~s~~~~~l~~~~~~~~i~~~~~--~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~ 302 (337)
T 1gxr_A 227 IFSLGYCPTGEWLAVGMESSNVEVLHV--N--KPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ 302 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEET--T--SSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEEC--C--CCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE
Confidence 555666655555555543 44444554 2 222334444677999999999999999999999999999988865533
Q ss_pred EecCCCCcEEEEEeccCCCceEEEE
Q 043355 117 RCRSDSENILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 117 ~cK~k~~~IlGF~Wt~~~~cdivlV 141 (143)
. .....|.+..|..+. +.++.
T Consensus 303 ~--~~~~~v~~~~~s~~~--~~l~~ 323 (337)
T 1gxr_A 303 S--KESSSVLSCDISVDD--KYIVT 323 (337)
T ss_dssp E--ECSSCEEEEEECTTS--CEEEE
T ss_pred e--cCCCcEEEEEECCCC--CEEEE
Confidence 2 245679999998876 65554
No 7
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=96.99 E-value=0.03 Score=47.61 Aligned_cols=95 Identities=7% Similarity=0.036 Sum_probs=64.0
Q ss_pred CCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCC-ceEE
Q 043355 37 ESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETS-EAFS 115 (143)
Q Consensus 37 ~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~-~~~~ 115 (143)
....|-|+...++|.+...+.+.=|.+ .. ......+.--.++|.+++||||+++||.--.+.+|.+++..++ ....
T Consensus 20 ~~~~~~~spdg~~l~~~~~~~v~l~~~--~~-~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~ 96 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCNGTSVYTVPV--GS-LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK 96 (611)
T ss_dssp CCCCCEECTTSSEEEEEETTEEEEEET--TC-SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred ceeEEeeCCCCCEEEeCCCCEEEEecC--CC-cccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceee
Confidence 366678887655555553333333333 21 2233344446679999999999999999999999999999765 3334
Q ss_pred EEecCCCCcEEEEEeccCC
Q 043355 116 HRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 116 q~cK~k~~~IlGF~Wt~~~ 134 (143)
+..+..+..|...-|....
T Consensus 97 ~~~~~~~~~v~~v~fs~dg 115 (611)
T 1nr0_A 97 TTIPVFSGPVKDISWDSES 115 (611)
T ss_dssp EEEECSSSCEEEEEECTTS
T ss_pred EeecccCCceEEEEECCCC
Confidence 4555556678888887665
No 8
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=96.95 E-value=0.035 Score=40.64 Aligned_cols=99 Identities=13% Similarity=0.135 Sum_probs=69.8
Q ss_pred CCCCcceeEeCCCcEEEEEcCCC-eEEEEEccCCCC-CCCceecCCCCceeEEEecC--CCcEEEEecCCCeEEEEEcCC
Q 043355 35 IPESRGLHYDDGTKLLISSTSNQ-IFSWKTVPFNPL-ATSTSDSIPEGPILSIRFSL--DTKLIAIQRSSSEIQFWIRET 110 (143)
Q Consensus 35 ~~~~~~vFyDDank~v~avrsgg-v~gv~v~~~~p~-~~~~~frid~G~I~sIKFS~--D~KiLAIQRs~~sVEFvn~~~ 110 (143)
...++.+=|+...+.|++...+| +.=|.+...... .....+.-..++|.+++|+| |+++|+.--.+..|-+++..+
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~ 90 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDP 90 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECT
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCC
Confidence 34577888888777777776555 555666222111 11122223667999999999 799999999999999999977
Q ss_pred Cc--------eEEEEecCCCCcEEEEEeccC
Q 043355 111 SE--------AFSHRCRSDSENILGFFWTDC 133 (143)
Q Consensus 111 ~~--------~~~q~cK~k~~~IlGF~Wt~~ 133 (143)
+. ......+.....|.+..|...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 121 (351)
T 3f3f_A 91 DQEECSGRRWNKLCTLNDSKGSLYSVKFAPA 121 (351)
T ss_dssp TSCTTSSCSEEEEEEECCCSSCEEEEEECCG
T ss_pred CcccccccCcceeeeecccCCceeEEEEcCC
Confidence 63 445555666788999999876
No 9
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.92 E-value=0.026 Score=42.70 Aligned_cols=105 Identities=7% Similarity=0.065 Sum_probs=71.0
Q ss_pred cCCCCcceeEeCCCcEEEEEcCCC-eEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCc
Q 043355 34 SIPESRGLHYDDGTKLLISSTSNQ-IFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSE 112 (143)
Q Consensus 34 ~~~~~~~vFyDDank~v~avrsgg-v~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~ 112 (143)
+...++.+-|+...+.|++-..++ +.=|.+.... .+....+.-.+++|.++.||||+++|+.--.+..|-+++.+++.
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 85 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 85 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe
Confidence 445578888887666666664444 4445551110 00233444467799999999999999999999999999998774
Q ss_pred -eEEEEecCCCCcEEEEEeccCCCceEEEE
Q 043355 113 -AFSHRCRSDSENILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 113 -~~~q~cK~k~~~IlGF~Wt~~~~cdivlV 141 (143)
............|....|.... +.+++
T Consensus 86 ~~~~~~~~~~~~~v~~~~~~~~~--~~l~~ 113 (372)
T 1k8k_C 86 WKPTLVILRINRAARCVRWAPNE--KKFAV 113 (372)
T ss_dssp EEEEEECCCCSSCEEEEEECTTS--SEEEE
T ss_pred eeeeEEeecCCCceeEEEECCCC--CEEEE
Confidence 3333445566779999998665 44443
No 10
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.76 E-value=0.078 Score=39.90 Aligned_cols=99 Identities=13% Similarity=0.256 Sum_probs=68.0
Q ss_pred CCCcceeEeCCCcEEEEEcCCC-eEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceE
Q 043355 36 PESRGLHYDDGTKLLISSTSNQ-IFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAF 114 (143)
Q Consensus 36 ~~~~~vFyDDank~v~avrsgg-v~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~ 114 (143)
..++.+-|+...+.|++...+| +.=|.. . ..+....+.-.+++|.+++||||+++|+.--.+..|.+++.+++...
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~--~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 100 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADKLIKIWGA--Y-DGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL 100 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEET--T-TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeC--C-CcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEE
Confidence 4577788887777777765555 333444 2 11122233336679999999999999999999999999999887533
Q ss_pred EEEecCCCCcEEEEEeccCCCceEEE
Q 043355 115 SHRCRSDSENILGFFWTDCPLCDFVV 140 (143)
Q Consensus 115 ~q~cK~k~~~IlGF~Wt~~~~cdivl 140 (143)
+..+.....|....|.... ++++
T Consensus 101 -~~~~~~~~~v~~~~~~~~~--~~l~ 123 (312)
T 4ery_A 101 -KTLKGHSNYVFCCNFNPQS--NLIV 123 (312)
T ss_dssp -EEEECCSSCEEEEEECSSS--SEEE
T ss_pred -EEEcCCCCCEEEEEEcCCC--CEEE
Confidence 3445566778888887665 4443
No 11
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=96.76 E-value=0.04 Score=42.14 Aligned_cols=94 Identities=10% Similarity=0.076 Sum_probs=67.7
Q ss_pred CCCcceeEeCCCcEEEEEcCCC-eEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceE
Q 043355 36 PESRGLHYDDGTKLLISSTSNQ-IFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAF 114 (143)
Q Consensus 36 ~~~~~vFyDDank~v~avrsgg-v~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~ 114 (143)
..++.+-|....+.|++--.++ +.=|.+ . ..+....+.--+++|.+|.||||+++||.-=.+.+|-+++.+++...
T Consensus 56 ~~v~~~~~~~~~~~l~s~s~d~~i~vwd~--~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~ 132 (304)
T 2ynn_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNY--N-TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132 (304)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEET--T-TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEE
T ss_pred CcEEEEEEeCCCCEEEEECCCCEEEEEEC--C-CCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcch
Confidence 3455566666566666654554 333444 1 12233445456789999999999999999999999999999888777
Q ss_pred EEEecCCCCcEEEEEecc
Q 043355 115 SHRCRSDSENILGFFWTD 132 (143)
Q Consensus 115 ~q~cK~k~~~IlGF~Wt~ 132 (143)
.+..+.....|.+.-|..
T Consensus 133 ~~~~~~h~~~v~~v~~~p 150 (304)
T 2ynn_A 133 EQTFEGHEHFVMCVAFNP 150 (304)
T ss_dssp EEEECCCCSCEEEEEECT
T ss_pred hhhhcccCCcEEEEEECC
Confidence 777777778899998875
No 12
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.71 E-value=0.073 Score=41.44 Aligned_cols=97 Identities=18% Similarity=0.139 Sum_probs=63.7
Q ss_pred CcceeEeCCCcEEEEEcCCCeEE-EEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEE
Q 043355 38 SRGLHYDDGTKLLISSTSNQIFS-WKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSH 116 (143)
Q Consensus 38 ~~~vFyDDank~v~avrsggv~g-v~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q 116 (143)
+..+-|....+.|++-..+|... |.+ . ..+....+......|.+++||||+++||.--.+..|.+++..++.. .+
T Consensus 125 ~~~~~~spdg~~l~~g~~dg~v~i~~~--~-~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~-~~ 200 (321)
T 3ow8_A 125 AWTLAFSPDSQYLATGTHVGKVNIFGV--E-SGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL-LH 200 (321)
T ss_dssp CCCEEECTTSSEEEEECTTSEEEEEET--T-TCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EE
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEEc--C-CCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-EE
Confidence 44566666556666554444332 333 1 1222233333555899999999999999999999999999988743 33
Q ss_pred EecCCCCcEEEEEeccCCCceEEE
Q 043355 117 RCRSDSENILGFFWTDCPLCDFVV 140 (143)
Q Consensus 117 ~cK~k~~~IlGF~Wt~~~~cdivl 140 (143)
..+.....|....|..+. ++++
T Consensus 201 ~~~~h~~~v~~l~~spd~--~~l~ 222 (321)
T 3ow8_A 201 TLEGHAMPIRSLTFSPDS--QLLV 222 (321)
T ss_dssp EECCCSSCCCEEEECTTS--CEEE
T ss_pred EEcccCCceeEEEEcCCC--CEEE
Confidence 445556678888887665 5444
No 13
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.70 E-value=0.12 Score=40.14 Aligned_cols=98 Identities=9% Similarity=0.186 Sum_probs=70.8
Q ss_pred cCCCCcceeEeCCCcEEEEEcCCCe-EEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCC-
Q 043355 34 SIPESRGLHYDDGTKLLISSTSNQI-FSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETS- 111 (143)
Q Consensus 34 ~~~~~~~vFyDDank~v~avrsggv-~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~- 111 (143)
+...++.+-|....+.+++--.+|. .=|.+ . .......+....+.|.++.||||+++||.--.+..|.+++..++
T Consensus 54 H~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~--~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~ 130 (340)
T 1got_B 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDS--Y-TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE 130 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEET--T-TCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEEC--C-CCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC
Confidence 3456788888877777777755553 33444 2 12233445557779999999999999999999999999999665
Q ss_pred --ceEEEEecCCCCcEEEEEeccCC
Q 043355 112 --EAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 112 --~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
.............|....|...+
T Consensus 131 ~~~~~~~~~~~h~~~v~~~~~~~~~ 155 (340)
T 1got_B 131 GNVRVSRELAGHTGYLSCCRFLDDN 155 (340)
T ss_dssp BSCEEEEEEECCSSCEEEEEEEETT
T ss_pred CcceeEEEecCCCccEEEEEECCCC
Confidence 24555666667778888887766
No 14
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=96.69 E-value=0.014 Score=46.47 Aligned_cols=57 Identities=11% Similarity=-0.024 Sum_probs=47.9
Q ss_pred CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEEEecCCCCcEEEEEeccCC
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
..++|.++.||||+++||.-=.+.+|.+++.+++......-+.....|.+.-|-...
T Consensus 268 ~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg 324 (365)
T 4h5i_A 268 RFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDS 324 (365)
T ss_dssp SCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTS
T ss_pred CCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCC
Confidence 456899999999999999999999999999998865554445567889999997655
No 15
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.042 Score=40.34 Aligned_cols=93 Identities=12% Similarity=0.037 Sum_probs=63.4
Q ss_pred cCCCCcceeEeCCCcEEEEEcCCC-eEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCC-
Q 043355 34 SIPESRGLHYDDGTKLLISSTSNQ-IFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETS- 111 (143)
Q Consensus 34 ~~~~~~~vFyDDank~v~avrsgg-v~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~- 111 (143)
+...++.+.|-+ .+.+++...+| +.=|.+ . .......+...+++|.++.||||+++|++--.+..|.+++..+.
T Consensus 17 h~~~v~~~~~~~-~~~l~s~~~dg~v~vw~~--~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 92 (313)
T 3odt_A 17 HDQDVRDVVAVD-DSKVASVSRDGTVRLWSK--D-DQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATS 92 (313)
T ss_dssp CSSCEEEEEEEE-TTEEEEEETTSEEEEEEE--S-SSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCT
T ss_pred CCCCcEEEEecC-CCEEEEEEcCCcEEEEEC--C-CCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecC
Confidence 345577788843 44566655555 555666 2 11222333346789999999999999999999999999998554
Q ss_pred -ceEEEEecCCCCcEEEEEe
Q 043355 112 -EAFSHRCRSDSENILGFFW 130 (143)
Q Consensus 112 -~~~~q~cK~k~~~IlGF~W 130 (143)
....+..+.....|..+.|
T Consensus 93 ~~~~~~~~~~~~~~i~~~~~ 112 (313)
T 3odt_A 93 GEDPLYTLIGHQGNVCSLSF 112 (313)
T ss_dssp TSCC-CEECCCSSCEEEEEE
T ss_pred CCCcccchhhcccCEEEEEe
Confidence 2334455666778999998
No 16
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.63 E-value=0.051 Score=41.08 Aligned_cols=101 Identities=12% Similarity=0.197 Sum_probs=69.5
Q ss_pred CCCCcceeEeCCCcEEEEEcC-CCeEEEEEccCCCCCCCceecC--CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCC
Q 043355 35 IPESRGLHYDDGTKLLISSTS-NQIFSWKTVPFNPLATSTSDSI--PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETS 111 (143)
Q Consensus 35 ~~~~~~vFyDDank~v~avrs-ggv~gv~v~~~~p~~~~~~fri--d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~ 111 (143)
...++.+-|+...+.|++... +.+.=|.+... . ....+.+ ..++|.++.||||+++||+--.+..|.+++..++
T Consensus 52 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~ 128 (372)
T 1k8k_C 52 NGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR--T-WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE 128 (372)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEEEETT--E-EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETT
T ss_pred CCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC--e-eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCC
Confidence 345788889887777776644 45566766221 1 1112222 5669999999999999999999999999999776
Q ss_pred ce---EEEEecCCCCcEEEEEeccCCCceEEE
Q 043355 112 EA---FSHRCRSDSENILGFFWTDCPLCDFVV 140 (143)
Q Consensus 112 ~~---~~q~cK~k~~~IlGF~Wt~~~~cdivl 140 (143)
.. ...........|.+..|.... +.++
T Consensus 129 ~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~ 158 (372)
T 1k8k_C 129 NDWWVCKHIKKPIRSTVLSLDWHPNS--VLLA 158 (372)
T ss_dssp TTEEEEEEECTTCCSCEEEEEECTTS--SEEE
T ss_pred CcceeeeeeecccCCCeeEEEEcCCC--CEEE
Confidence 43 223334446789999998765 5544
No 17
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.059 Score=40.28 Aligned_cols=99 Identities=13% Similarity=0.116 Sum_probs=66.8
Q ss_pred CCcceeEeCCCcEEEEEcCCC-eEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEE
Q 043355 37 ESRGLHYDDGTKLLISSTSNQ-IFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFS 115 (143)
Q Consensus 37 ~~~~vFyDDank~v~avrsgg-v~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~ 115 (143)
.++.+-|+...+.+++...+| +.-|.+ .........+....++|.++.||||+++|+.--.+..|-+++..++....
T Consensus 177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 254 (369)
T 3zwl_B 177 AATVAGWSTKGKYIIAGHKDGKISKYDV--SNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK 254 (369)
T ss_dssp CEEEEEECGGGCEEEEEETTSEEEEEET--TTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred ceeEEEEcCCCCEEEEEcCCCEEEEEEC--CCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceee
Confidence 566666777666666665555 444444 21122233344467899999999999999999999999999998875443
Q ss_pred EEecCCCCcEEEEEeccCCCceEEEE
Q 043355 116 HRCRSDSENILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 116 q~cK~k~~~IlGF~Wt~~~~cdivlV 141 (143)
..- ....+....|.... +.+++
T Consensus 255 ~~~--~~~~~~~~~~~~~~--~~l~~ 276 (369)
T 3zwl_B 255 KYE--TDCPLNTAVITPLK--EFIIL 276 (369)
T ss_dssp EEE--CSSCEEEEEECSSS--SEEEE
T ss_pred eec--CCCCceeEEecCCC--ceEEE
Confidence 322 44568888887766 55544
No 18
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=96.60 E-value=0.045 Score=44.39 Aligned_cols=98 Identities=9% Similarity=0.145 Sum_probs=72.8
Q ss_pred cCCCCcceeEeCCCcEEEEEcC-CCeEEEEEccCCCCCCCceecC-CCCceeEEEecC----------CCcEEEEecCCC
Q 043355 34 SIPESRGLHYDDGTKLLISSTS-NQIFSWKTVPFNPLATSTSDSI-PEGPILSIRFSL----------DTKLIAIQRSSS 101 (143)
Q Consensus 34 ~~~~~~~vFyDDank~v~avrs-ggv~gv~v~~~~p~~~~~~fri-d~G~I~sIKFS~----------D~KiLAIQRs~~ 101 (143)
....++.+-|+...+.|++... |.+.=|.+.. .+....+.- ..++|.++.||| |+++||.--.+.
T Consensus 487 ~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg 563 (615)
T 1pgu_A 487 LRAKPSYISISPSETYIAAGDVMGKILLYDLQS---REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT 563 (615)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---TEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTS
T ss_pred ccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC---CcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCC
Confidence 3455778888877777777755 4455565521 112222332 567999999999 999999999999
Q ss_pred eEEEEEcCCCceEEEEecCCCCcEEEEEeccCC
Q 043355 102 EIQFWIRETSEAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 102 sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
.|.+++.+++....+..+.....|.+..|....
T Consensus 564 ~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 596 (615)
T 1pgu_A 564 NIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS 596 (615)
T ss_dssp CEEEEESSCTTCCEEETTSSTTCEEEEEEEETT
T ss_pred cEEEEECCCCceechhhhcCccceEEEEEcCCC
Confidence 999999998866666677778889999999888
No 19
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=96.58 E-value=0.086 Score=39.35 Aligned_cols=93 Identities=14% Similarity=0.320 Sum_probs=64.8
Q ss_pred cCCCCcceeEeCCC---cEEEEEcCCC-eEEEEEccCCCCCCCc--eecCCCCceeEEEecCCCcEEEEecCCCeEEEEE
Q 043355 34 SIPESRGLHYDDGT---KLLISSTSNQ-IFSWKTVPFNPLATST--SDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWI 107 (143)
Q Consensus 34 ~~~~~~~vFyDDan---k~v~avrsgg-v~gv~v~~~~p~~~~~--~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn 107 (143)
+...++.+=|...+ +.|++-..+| +.=|.+ ... .... .+.-.+++|.+++||||+++|+.--.+..|.+++
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~--~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd 114 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEV--QDS-GQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD 114 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEE--CTT-SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEc--CCC-CceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEE
Confidence 34558888888775 4444444444 455666 221 2222 2333688999999999999999999999999999
Q ss_pred cCCCceEEEEecCCCCcEEEEEec
Q 043355 108 RETSEAFSHRCRSDSENILGFFWT 131 (143)
Q Consensus 108 ~~~~~~~~q~cK~k~~~IlGF~Wt 131 (143)
.+++..... ......|.+..|.
T Consensus 115 ~~~~~~~~~--~~~~~~v~~~~~~ 136 (368)
T 3mmy_A 115 LSSNQAIQI--AQHDAPVKTIHWI 136 (368)
T ss_dssp TTTTEEEEE--EECSSCEEEEEEE
T ss_pred cCCCCceee--ccccCceEEEEEE
Confidence 988754432 3356779999994
No 20
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.051 Score=41.46 Aligned_cols=100 Identities=13% Similarity=0.163 Sum_probs=67.1
Q ss_pred CCCcceeEeCCCcEEEEEcCCCeE-EEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCc--
Q 043355 36 PESRGLHYDDGTKLLISSTSNQIF-SWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSE-- 112 (143)
Q Consensus 36 ~~~~~vFyDDank~v~avrsggv~-gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~-- 112 (143)
..++.+-|.... .+++...+|.. -|.+ . .......+...+++|.++.||||+++||+--.+..|.+++..++.
T Consensus 290 ~~i~~~~~~~~~-~l~~~~~d~~i~i~d~--~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~ 365 (425)
T 1r5m_A 290 QSIVSASWVGDD-KVISCSMDGSVRLWSL--K-QNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSK 365 (425)
T ss_dssp SCEEEEEEETTT-EEEEEETTSEEEEEET--T-TTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-
T ss_pred ccEEEEEECCCC-EEEEEeCCCcEEEEEC--C-CCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccc
Confidence 346667777655 66666555533 3333 1 122223333467799999999999999999999999999996554
Q ss_pred -----------------eEEEEecCCCC--cEEEEEeccCCCceEEEE
Q 043355 113 -----------------AFSHRCRSDSE--NILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 113 -----------------~~~q~cK~k~~--~IlGF~Wt~~~~cdivlV 141 (143)
+.....+.... .|..+.|.... +.+++
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~ 411 (425)
T 1r5m_A 366 SRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG--NKISV 411 (425)
T ss_dssp -------------CEECCEEEEECCTTCCCCEEEEEECTTS--SEEEE
T ss_pred eeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCC--ceEEE
Confidence 13445555544 89999998776 55543
No 21
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.54 E-value=0.14 Score=38.45 Aligned_cols=99 Identities=10% Similarity=0.205 Sum_probs=65.1
Q ss_pred CCcceeEeCCCcEEEEEcCCC-eEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEE
Q 043355 37 ESRGLHYDDGTKLLISSTSNQ-IFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFS 115 (143)
Q Consensus 37 ~~~~vFyDDank~v~avrsgg-v~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~ 115 (143)
.+..+-|....+.+++...+| +.=|.+ . ..+....+....++|.++.||||+++|+.--.+..|.+++..++....
T Consensus 109 ~v~~~~~~~~~~~l~s~~~d~~i~iwd~--~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~ 185 (312)
T 4ery_A 109 YVFCCNFNPQSNLIVSGSFDESVRIWDV--K-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185 (312)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEET--T-TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEEC--C-CCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee
Confidence 355566666656666654443 444544 1 111222333456799999999999999999999999999998886655
Q ss_pred EEecCCCCcEEEEEeccCCCceEEE
Q 043355 116 HRCRSDSENILGFFWTDCPLCDFVV 140 (143)
Q Consensus 116 q~cK~k~~~IlGF~Wt~~~~cdivl 140 (143)
.........|....|..+. +.++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~--~~l~ 208 (312)
T 4ery_A 186 TLIDDDNPPVSFVKFSPNG--KYIL 208 (312)
T ss_dssp EECCSSCCCEEEEEECTTS--SEEE
T ss_pred EEeccCCCceEEEEECCCC--CEEE
Confidence 5444455667777777665 5544
No 22
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.15 Score=38.82 Aligned_cols=103 Identities=10% Similarity=0.122 Sum_probs=65.3
Q ss_pred CCCCcceeEeCCCc-EEEEEcCCC-eEEEEE----ccCCCC---CCCceecC----------CCCceeEEEecCCCcEEE
Q 043355 35 IPESRGLHYDDGTK-LLISSTSNQ-IFSWKT----VPFNPL---ATSTSDSI----------PEGPILSIRFSLDTKLIA 95 (143)
Q Consensus 35 ~~~~~~vFyDDank-~v~avrsgg-v~gv~v----~~~~p~---~~~~~fri----------d~G~I~sIKFS~D~KiLA 95 (143)
...++.+-|....+ .|++-..+| +.=|.+ ....+. .....+.- .+++|.++.||||+++||
T Consensus 45 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 124 (425)
T 1r5m_A 45 LDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIV 124 (425)
T ss_dssp CSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEE
T ss_pred cCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEE
Confidence 35677787877666 666665545 444555 211100 01122221 255999999999999999
Q ss_pred EecCCCeEEEEEcCCCceEEEEecCCCCcEEEEEeccCCCceEEEE
Q 043355 96 IQRSSSEIQFWIRETSEAFSHRCRSDSENILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 96 IQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~~cdivlV 141 (143)
+--.+..|.+++ .++. ..+..+.....|.+..|.... +.++.
T Consensus 125 ~~~~dg~i~i~~-~~~~-~~~~~~~~~~~v~~~~~~~~~--~~l~~ 166 (425)
T 1r5m_A 125 TGVENGELRLWN-KTGA-LLNVLNFHRAPIVSVKWNKDG--THIIS 166 (425)
T ss_dssp EEETTSCEEEEE-TTSC-EEEEECCCCSCEEEEEECTTS--SEEEE
T ss_pred EEeCCCeEEEEe-CCCC-eeeeccCCCccEEEEEECCCC--CEEEE
Confidence 999999999999 3443 333445566789999998766 54443
No 23
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.086 Score=39.65 Aligned_cols=101 Identities=13% Similarity=0.116 Sum_probs=71.6
Q ss_pred eecCCCCcceeEeCCCcEEEEEcC-CCeEEEEEccCCCCCCCceecCCCCceeEEEecCC--CcEEEEecCCCeEEEEEc
Q 043355 32 RCSIPESRGLHYDDGTKLLISSTS-NQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLD--TKLIAIQRSSSEIQFWIR 108 (143)
Q Consensus 32 R~~~~~~~~vFyDDank~v~avrs-ggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D--~KiLAIQRs~~sVEFvn~ 108 (143)
+-+...++.+-|+...+.|++-.. |.+.=|.+... .......++-..++|.+++||++ +++|+.--.+..|-+++.
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 86 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 86 (379)
T ss_dssp EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC-cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEc
Confidence 344556777888877777777644 45666777211 11122233346779999999988 899999999999999999
Q ss_pred CCCc-eEEEEecCCCCcEEEEEeccC
Q 043355 109 ETSE-AFSHRCRSDSENILGFFWTDC 133 (143)
Q Consensus 109 ~~~~-~~~q~cK~k~~~IlGF~Wt~~ 133 (143)
.++. ...+..+.....|....|...
T Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~ 112 (379)
T 3jrp_A 87 ENGRWSQIAVHAVHSASVNSVQWAPH 112 (379)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCG
T ss_pred CCCceeEeeeecCCCcceEEEEeCCC
Confidence 8874 345555556788999999876
No 24
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=96.38 E-value=0.11 Score=39.62 Aligned_cols=100 Identities=12% Similarity=0.175 Sum_probs=70.8
Q ss_pred CCCCcceeEeCCCcEEEEEcCCCe-EEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCce
Q 043355 35 IPESRGLHYDDGTKLLISSTSNQI-FSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEA 113 (143)
Q Consensus 35 ~~~~~~vFyDDank~v~avrsggv-~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~ 113 (143)
-..++.+=|....+.|++--.+|. .=|.+ . .......+...+++|.+++|+||+++|+.--.+.+|.+++.+++..
T Consensus 13 ~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~--~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~ 89 (304)
T 2ynn_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVELWNY--E-TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK 89 (304)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEET--T-TTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE
T ss_pred CCceEEEEECCCCCEEEEEcCCCcEEEEEC--C-CCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcE
Confidence 345777888887777777755553 33544 2 1222334445778999999999999999999999999999988754
Q ss_pred EEEEecCCCCcEEEEEeccCCCceEEE
Q 043355 114 FSHRCRSDSENILGFFWTDCPLCDFVV 140 (143)
Q Consensus 114 ~~q~cK~k~~~IlGF~Wt~~~~cdivl 140 (143)
. +..+.....|.+..|-... ++++
T Consensus 90 ~-~~~~~h~~~v~~~~~~~~~--~~l~ 113 (304)
T 2ynn_A 90 V-VDFEAHPDYIRSIAVHPTK--PYVL 113 (304)
T ss_dssp E-EEEECCSSCEEEEEECSSS--SEEE
T ss_pred E-EEEeCCCCcEEEEEEcCCC--CEEE
Confidence 3 3445566778888887665 4443
No 25
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.35 E-value=0.085 Score=44.90 Aligned_cols=100 Identities=12% Similarity=0.197 Sum_probs=69.7
Q ss_pred CCCCcceeEeCCCcEEEEEcCCC-eEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCce
Q 043355 35 IPESRGLHYDDGTKLLISSTSNQ-IFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEA 113 (143)
Q Consensus 35 ~~~~~~vFyDDank~v~avrsgg-v~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~ 113 (143)
...++.+=|....+.|.+...+| +.=|.+ . .......+...+++|.+++||||++.||+--.+..|.+++..++..
T Consensus 13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~--~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 89 (814)
T 3mkq_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNY--E-TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK 89 (814)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEET--T-TTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE
T ss_pred CCceEEEEECCCCCEEEEEeCCCEEEEEEC--C-CCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 34467777777666666665555 333444 1 1223334445788999999999999999999999999999988754
Q ss_pred EEEEecCCCCcEEEEEeccCCCceEEE
Q 043355 114 FSHRCRSDSENILGFFWTDCPLCDFVV 140 (143)
Q Consensus 114 ~~q~cK~k~~~IlGF~Wt~~~~cdivl 140 (143)
.. ..+.....|....|.... +.++
T Consensus 90 ~~-~~~~~~~~v~~~~~s~~~--~~l~ 113 (814)
T 3mkq_A 90 VV-DFEAHPDYIRSIAVHPTK--PYVL 113 (814)
T ss_dssp EE-EEECCSSCEEEEEECSSS--SEEE
T ss_pred EE-EEecCCCCEEEEEEeCCC--CEEE
Confidence 33 334456779999998765 4443
No 26
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.078 Score=40.95 Aligned_cols=99 Identities=14% Similarity=0.041 Sum_probs=67.5
Q ss_pred CCcceeEeC--CCcEEEEEcC-CCeEEEEEccCCCCCCCceec-C-CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCC
Q 043355 37 ESRGLHYDD--GTKLLISSTS-NQIFSWKTVPFNPLATSTSDS-I-PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETS 111 (143)
Q Consensus 37 ~~~~vFyDD--ank~v~avrs-ggv~gv~v~~~~p~~~~~~fr-i-d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~ 111 (143)
.+..+-|+. .++.+++.-. +.+.=|.+ . ........ . .+.+|.++.||||+++||.--.+..|.+++..++
T Consensus 127 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~--~--~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~ 202 (343)
T 3lrv_A 127 EIIYMYGHNEVNTEYFIWADNRGTIGFQSY--E--DDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP 202 (343)
T ss_dssp CEEEEECCC---CCEEEEEETTCCEEEEES--S--SSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCT
T ss_pred CEEEEEcCCCCCCCEEEEEeCCCcEEEEEC--C--CCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 366677777 6666665544 44445555 2 22223322 3 3448999999999999999999999999999888
Q ss_pred ceEEEEecC-CCCcEEEEEeccCCCceEEEE
Q 043355 112 EAFSHRCRS-DSENILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 112 ~~~~q~cK~-k~~~IlGF~Wt~~~~cdivlV 141 (143)
.......+. ....|....|..+. ..++.
T Consensus 203 ~~~~~~~~~~h~~~v~~l~fs~~g--~~l~s 231 (343)
T 3lrv_A 203 DQASSRFPVDEEAKIKEVKFADNG--YWMVV 231 (343)
T ss_dssp TSCCEECCCCTTSCEEEEEECTTS--SEEEE
T ss_pred CCCccEEeccCCCCEEEEEEeCCC--CEEEE
Confidence 655333444 56789999998766 55543
No 27
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=96.31 E-value=0.17 Score=38.46 Aligned_cols=74 Identities=9% Similarity=0.215 Sum_probs=49.0
Q ss_pred CCCcceeEeCCCcE-EEEEcC-CCeEEEEEccCCCCCCCcee---------------cCCCCceeEEEecCCCcEEEEec
Q 043355 36 PESRGLHYDDGTKL-LISSTS-NQIFSWKTVPFNPLATSTSD---------------SIPEGPILSIRFSLDTKLIAIQR 98 (143)
Q Consensus 36 ~~~~~vFyDDank~-v~avrs-ggv~gv~v~~~~p~~~~~~f---------------rid~G~I~sIKFS~D~KiLAIQR 98 (143)
..++.+-|....+. +++... |.+.-|.+... ......+ ....++|.++.||||++.|++--
T Consensus 187 ~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 264 (408)
T 4a11_B 187 QEILAVSWSPRYDYILATASADSRVKLWDVRRA--SGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG 264 (408)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTCS--SCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCC--CcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence 44677777776664 444433 44555665221 1111111 22566999999999999999999
Q ss_pred CCCeEEEEEcCCC
Q 043355 99 SSSEIQFWIRETS 111 (143)
Q Consensus 99 s~~sVEFvn~~~~ 111 (143)
.+..|.+++..++
T Consensus 265 ~dg~i~vwd~~~~ 277 (408)
T 4a11_B 265 TDNRMRLWNSSNG 277 (408)
T ss_dssp TTSCEEEEETTTC
T ss_pred CCCeEEEEECCCC
Confidence 9999999998654
No 28
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.30 E-value=0.094 Score=44.65 Aligned_cols=94 Identities=10% Similarity=0.076 Sum_probs=69.0
Q ss_pred CCCcceeEeCCCcEEEEEcCCC-eEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceE
Q 043355 36 PESRGLHYDDGTKLLISSTSNQ-IFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAF 114 (143)
Q Consensus 36 ~~~~~vFyDDank~v~avrsgg-v~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~ 114 (143)
..++.+-|....+.|++...+| +.=|.+ . ..+....+.-..++|.++.||||++.|++--.+..|.+++..++...
T Consensus 56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~--~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~ 132 (814)
T 3mkq_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNY--N-TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132 (814)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEET--T-TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEE
T ss_pred CcEEEEEEeCCCCEEEEEeCCCeEEEEEC--C-CCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceE
Confidence 3467777877666666665544 334444 1 12222334446779999999999999999999999999999888777
Q ss_pred EEEecCCCCcEEEEEecc
Q 043355 115 SHRCRSDSENILGFFWTD 132 (143)
Q Consensus 115 ~q~cK~k~~~IlGF~Wt~ 132 (143)
.+........|.+..|..
T Consensus 133 ~~~~~~~~~~v~~~~~~p 150 (814)
T 3mkq_A 133 EQTFEGHEHFVMCVAFNP 150 (814)
T ss_dssp EEEEECCSSCEEEEEEET
T ss_pred EEEEcCCCCcEEEEEEEc
Confidence 777777778899999986
No 29
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=96.24 E-value=0.089 Score=41.89 Aligned_cols=93 Identities=6% Similarity=0.048 Sum_probs=62.8
Q ss_pred CCcceeEeCCCcEEEEEcCCC-eEEEEEccCCCCCCCceec--C--CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCC
Q 043355 37 ESRGLHYDDGTKLLISSTSNQ-IFSWKTVPFNPLATSTSDS--I--PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETS 111 (143)
Q Consensus 37 ~~~~vFyDDank~v~avrsgg-v~gv~v~~~~p~~~~~~fr--i--d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~ 111 (143)
+++.+=|...++ +++-..+| +-=|.+ ... +.....+ . -+++|.++.||||+++||.--.+.+|-+++.+++
T Consensus 84 ~v~~~~~s~d~~-l~~~s~dg~v~lWd~--~~~-~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~ 159 (344)
T 4gqb_B 84 GVADLTWVGERG-ILVASDSGAVELWEL--DEN-ETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ 159 (344)
T ss_dssp CEEEEEEETTTE-EEEEETTSEEEEEEE--CTT-SSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred CEEEEEEeCCCe-EEEEECCCEEEEEec--cCC-CceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 356666666544 44444444 444666 211 2222222 2 4679999999999999999999999999999887
Q ss_pred ceEEEEecCCCCcEEEEEeccCC
Q 043355 112 EAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 112 ~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
.. .+..+..+..|....|....
T Consensus 160 ~~-~~~~~~h~~~V~~~~~~~~~ 181 (344)
T 4gqb_B 160 VV-LSSYRAHAAQVTCVAASPHK 181 (344)
T ss_dssp EE-EEEECCCSSCEEEEEECSSC
T ss_pred cE-EEEEcCcCCceEEEEecCCC
Confidence 43 34556667788888886554
No 30
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=96.22 E-value=0.23 Score=37.07 Aligned_cols=99 Identities=11% Similarity=0.107 Sum_probs=64.0
Q ss_pred CCcceeEeCC-C--c-EEEEEcCCCe-EEEEEccCCCCCCCceecCCCCceeEEEecC-CCcEEEEecCCCeEEEEEcCC
Q 043355 37 ESRGLHYDDG-T--K-LLISSTSNQI-FSWKTVPFNPLATSTSDSIPEGPILSIRFSL-DTKLIAIQRSSSEIQFWIRET 110 (143)
Q Consensus 37 ~~~~vFyDDa-n--k-~v~avrsggv-~gv~v~~~~p~~~~~~frid~G~I~sIKFS~-D~KiLAIQRs~~sVEFvn~~~ 110 (143)
.++.+-|... + + .+++...+|. .=|.+ . ..+....+.-..++|.+++|+| |+++|+.--.+..|-+++..+
T Consensus 71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~--~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 147 (366)
T 3k26_A 71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINP--I-TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147 (366)
T ss_dssp CEEEEEEEECTTTCCEEEEEEETTCEEEEECT--T-TCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred cEEEEEeccCCCCCCCEEEEecCCCEEEEEEc--h-hceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence 3555555544 2 3 4444445553 22333 1 1222333444677999999999 999999999999999999988
Q ss_pred CceEEEEe--cCCCCcEEEEEeccCCCceEEE
Q 043355 111 SEAFSHRC--RSDSENILGFFWTDCPLCDFVV 140 (143)
Q Consensus 111 ~~~~~q~c--K~k~~~IlGF~Wt~~~~cdivl 140 (143)
+....... +.....|.+..|..+. +.++
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~ 177 (366)
T 3k26_A 148 DTLVAIFGGVEGHRDEVLSADYDLLG--EKIM 177 (366)
T ss_dssp TEEEEEECSTTSCSSCEEEEEECTTS--SEEE
T ss_pred CeEEEEecccccccCceeEEEECCCC--CEEE
Confidence 75443321 4567789999998765 5544
No 31
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=96.20 E-value=0.11 Score=38.89 Aligned_cols=94 Identities=12% Similarity=0.152 Sum_probs=65.3
Q ss_pred CCcceeEeC----CCcEEEEEcCCC-eEEEEEccCCCCCCCceec---C--CCCceeEEEecCC----CcEEEEecCCCe
Q 043355 37 ESRGLHYDD----GTKLLISSTSNQ-IFSWKTVPFNPLATSTSDS---I--PEGPILSIRFSLD----TKLIAIQRSSSE 102 (143)
Q Consensus 37 ~~~~vFyDD----ank~v~avrsgg-v~gv~v~~~~p~~~~~~fr---i--d~G~I~sIKFS~D----~KiLAIQRs~~s 102 (143)
.++.+=|.. .+..+++..+++ +.=|.+... +....+. - .++.|.++.|||| +++||+--.+..
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~ 96 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ---GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGI 96 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG---GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCE
T ss_pred ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC---cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCE
Confidence 466777773 677788876655 444555221 1112222 1 3468999999999 679999999999
Q ss_pred EEEEEcCCCceEEEEecCCCCcEEEEEecc-CC
Q 043355 103 IQFWIRETSEAFSHRCRSDSENILGFFWTD-CP 134 (143)
Q Consensus 103 VEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~-~~ 134 (143)
|.+++.+++... +..+.....|.+..|.. +.
T Consensus 97 i~v~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~ 128 (366)
T 3k26_A 97 IRIINPITMQCI-KHYVGHGNAINELKFHPRDP 128 (366)
T ss_dssp EEEECTTTCCEE-EEEESCCSCEEEEEECSSCT
T ss_pred EEEEEchhceEe-eeecCCCCcEEEEEECCCCC
Confidence 999999887543 34455677899999987 44
No 32
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=96.16 E-value=0.14 Score=40.43 Aligned_cols=97 Identities=7% Similarity=0.054 Sum_probs=61.0
Q ss_pred CCCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecC--CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCce
Q 043355 36 PESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSI--PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEA 113 (143)
Q Consensus 36 ~~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~fri--d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~ 113 (143)
.+++.+-|...++.+.+-..|.+.=|.+.... ......+.. -+++|.++.||||+++|+.-=.+.+|-+++.+++..
T Consensus 95 ~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~-~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~ 173 (357)
T 4g56_B 95 AGVTDVAWVSEKGILVASDSGAVELWEILEKE-SLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV 173 (357)
T ss_dssp SCEEEEEEETTTEEEEEETTSCEEEC---------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEE
T ss_pred CCEEEEEEcCCCCEEEEECCCEEEEeeccccc-eeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 34677777776665555444444445552211 111122222 457999999999999999999999999999988743
Q ss_pred EEEEecCCCCcEEEEEeccCC
Q 043355 114 FSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 114 ~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
.+..+..+..|.+.-|....
T Consensus 174 -~~~~~~h~~~v~~v~~s~~~ 193 (357)
T 4g56_B 174 -LKSYNAHSSEVNCVAACPGK 193 (357)
T ss_dssp -EEEECCCSSCEEEEEECTTC
T ss_pred -EEEEcCCCCCEEEEEEccCC
Confidence 33445566778888776554
No 33
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=96.15 E-value=0.07 Score=40.91 Aligned_cols=107 Identities=9% Similarity=0.102 Sum_probs=64.9
Q ss_pred eecCCCCcceeEeCCCcEEEEEcC-CCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCC
Q 043355 32 RCSIPESRGLHYDDGTKLLISSTS-NQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRET 110 (143)
Q Consensus 32 R~~~~~~~~vFyDDank~v~avrs-ggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~ 110 (143)
+-+...++.+-|....+.|++... +.+.=|.+...........+.-.+++|.+++||||+++|+.--.+..|.+++.++
T Consensus 52 ~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 131 (377)
T 3dwl_C 52 SDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQ 131 (377)
T ss_dssp CCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC--
T ss_pred ecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECC
Confidence 334445777777766666666544 4555566522210111222223667999999999999999999999999999977
Q ss_pred Cce--EEEEecC-CCCcEEEEEeccCCCceEEE
Q 043355 111 SEA--FSHRCRS-DSENILGFFWTDCPLCDFVV 140 (143)
Q Consensus 111 ~~~--~~q~cK~-k~~~IlGF~Wt~~~~cdivl 140 (143)
+.. ..+.-+. ....|....|..+. ++++
T Consensus 132 ~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~ 162 (377)
T 3dwl_C 132 ENDWWVSKHLKRPLRSTILSLDWHPNN--VLLA 162 (377)
T ss_dssp ---CCCCEEECSSCCSCEEEEEECTTS--SEEE
T ss_pred cccceeeeEeecccCCCeEEEEEcCCC--CEEE
Confidence 753 3334444 57789999998765 5444
No 34
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=96.11 E-value=0.092 Score=42.25 Aligned_cols=104 Identities=12% Similarity=0.229 Sum_probs=68.4
Q ss_pred CCCcceeEeCCCcEEEE-EcC-CCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCc-EEEEecCCCeEEEEEcCCCc
Q 043355 36 PESRGLHYDDGTKLLIS-STS-NQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTK-LIAIQRSSSEIQFWIRETSE 112 (143)
Q Consensus 36 ~~~~~vFyDDank~v~a-vrs-ggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~K-iLAIQRs~~sVEFvn~~~~~ 112 (143)
..+..+-|...++.+|+ ... |.+.-|.+...........++...++|.+|.|+|+++ +||+--.+..|.+++..+..
T Consensus 232 ~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~ 311 (430)
T 2xyi_A 232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 311 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred CCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC
Confidence 34677778775444444 433 4445565522211133344445667999999999997 89999999999999997654
Q ss_pred eEEEEecCCCCcEEEEEeccCCCceEEEE
Q 043355 113 AFSHRCRSDSENILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 113 ~~~q~cK~k~~~IlGF~Wt~~~~cdivlV 141 (143)
...+..+.....|.+..|.... +.+|+
T Consensus 312 ~~~~~~~~h~~~v~~i~~sp~~--~~~l~ 338 (430)
T 2xyi_A 312 LKLHSFESHKDEIFQVQWSPHN--ETILA 338 (430)
T ss_dssp SCSEEEECCSSCEEEEEECSSC--TTEEE
T ss_pred CCeEEeecCCCCEEEEEECCCC--CCEEE
Confidence 3344444567789999998766 44443
No 35
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.26 Score=36.05 Aligned_cols=96 Identities=14% Similarity=0.095 Sum_probs=64.1
Q ss_pred CCcceeEeCCCcEEEEEcCCCe-EEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEE
Q 043355 37 ESRGLHYDDGTKLLISSTSNQI-FSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFS 115 (143)
Q Consensus 37 ~~~~vFyDDank~v~avrsggv-~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~ 115 (143)
.++.+-|.+.++ +++...+|. .=|.+ . ..+....+...+++|.++.||||++ |+.--.+..|.+++..++....
T Consensus 186 ~i~~~~~~~~~~-~~~~~~dg~i~i~d~--~-~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~ 260 (313)
T 3odt_A 186 VVRHLAVVDDGH-FISCSNDGLIKLVDM--H-TGDVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQ 260 (313)
T ss_dssp CEEEEEEEETTE-EEEEETTSEEEEEET--T-TCCEEEEEECCSSCEEEEEECTTSC-EEEEETTSEEEEECTTTCCEEE
T ss_pred cEEEEEEcCCCe-EEEccCCCeEEEEEC--C-chhhhhhhhcCCceEEEEEEecCCC-EEEEecCCEEEEEECCCCceeE
Confidence 466777776666 555555553 33444 1 1223334445778999999999996 5566678899999998875433
Q ss_pred EEecCCCCcEEEEEeccCCCceEEE
Q 043355 116 HRCRSDSENILGFFWTDCPLCDFVV 140 (143)
Q Consensus 116 q~cK~k~~~IlGF~Wt~~~~cdivl 140 (143)
..+.....|.+..|..+. +++.
T Consensus 261 -~~~~~~~~i~~~~~~~~~--~~~~ 282 (313)
T 3odt_A 261 -VITLPAISIWSVDCMSNG--DIIV 282 (313)
T ss_dssp -EEECSSSCEEEEEECTTS--CEEE
T ss_pred -EEeccCceEEEEEEccCC--CEEE
Confidence 334456689999998887 5543
No 36
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=96.09 E-value=0.031 Score=42.92 Aligned_cols=99 Identities=6% Similarity=0.001 Sum_probs=63.0
Q ss_pred CCCCcceeEeCCCcEEEEE-cCCCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCc-
Q 043355 35 IPESRGLHYDDGTKLLISS-TSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSE- 112 (143)
Q Consensus 35 ~~~~~~vFyDDank~v~av-rsggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~- 112 (143)
...++.+-|....+.|++. ..+.+.=|.+....+ .....+.-..++|.+++||||+++||.--.+.+|-+++..++.
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW-KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT 89 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 3457778888766666555 345555666632100 2223333467799999999999999999899999999998775
Q ss_pred -eEEEEecCCCCcEEEEEeccCC
Q 043355 113 -AFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 113 -~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
............|....|..+.
T Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~ 112 (377)
T 3dwl_C 90 WKQTLVLLRLNRAATFVRWSPNE 112 (377)
T ss_dssp CCCEEECCCCSSCEEEEECCTTS
T ss_pred eeeeeEecccCCceEEEEECCCC
Confidence 2333445566789999997654
No 37
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=96.05 E-value=0.2 Score=35.83 Aligned_cols=97 Identities=10% Similarity=-0.033 Sum_probs=55.0
Q ss_pred CcceeEeCCCcEEEEEcC--C-CeEEEEEccCCCCCCCceecC-CCCceeEEEecCCCcEEE-EecCCCeEEEEEcCC-C
Q 043355 38 SRGLHYDDGTKLLISSTS--N-QIFSWKTVPFNPLATSTSDSI-PEGPILSIRFSLDTKLIA-IQRSSSEIQFWIRET-S 111 (143)
Q Consensus 38 ~~~vFyDDank~v~avrs--g-gv~gv~v~~~~p~~~~~~fri-d~G~I~sIKFS~D~KiLA-IQRs~~sVEFvn~~~-~ 111 (143)
+..+-|....+.|++... + ...=|.+... .... ..+ ...++.+++||||++.|+ ....+..+.++.... +
T Consensus 87 ~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~--~~~~--~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~ 162 (297)
T 2ojh_A 87 NNDHGISPDGALYAISDKVEFGKSAIYLLPST--GGTP--RLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS 162 (297)
T ss_dssp CSCCEECTTSSEEEEEECTTTSSCEEEEEETT--CCCC--EECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT
T ss_pred ccceEECCCCCEEEEEEeCCCCcceEEEEECC--CCce--EEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCC
Confidence 455677766666666642 1 2222333111 1122 223 334689999999999887 555667788887632 2
Q ss_pred ceEEEEecCCCCcEEEEEeccCCCceEEEE
Q 043355 112 EAFSHRCRSDSENILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 112 ~~~~q~cK~k~~~IlGF~Wt~~~~cdivlV 141 (143)
.+. +........+..+.|.... +.+++
T Consensus 163 ~~~-~~~~~~~~~~~~~~~s~dg--~~l~~ 189 (297)
T 2ojh_A 163 GVE-TRLTHGEGRNDGPDYSPDG--RWIYF 189 (297)
T ss_dssp CCE-EECCCSSSCEEEEEECTTS--SEEEE
T ss_pred Ccc-eEcccCCCccccceECCCC--CEEEE
Confidence 222 2233345678899997665 54443
No 38
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=96.04 E-value=0.068 Score=39.92 Aligned_cols=62 Identities=15% Similarity=0.336 Sum_probs=51.4
Q ss_pred CCCceeEEEecCC---CcEEEEecCCCeEEEEEcCC-CceEEEEecCCCCcEEEEEeccCCCceEEEE
Q 043355 78 PEGPILSIRFSLD---TKLIAIQRSSSEIQFWIRET-SEAFSHRCRSDSENILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 78 d~G~I~sIKFS~D---~KiLAIQRs~~sVEFvn~~~-~~~~~q~cK~k~~~IlGF~Wt~~~~cdivlV 141 (143)
-+++|.+++|||| +++||.--.+..|.+++.++ +.......+.....|....|..+. +.++.
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s 103 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG--SKVFT 103 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS--SEEEE
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC--CEEEE
Confidence 5679999999999 59999999999999999987 566656666677889999998766 55543
No 39
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=96.01 E-value=0.11 Score=38.95 Aligned_cols=95 Identities=12% Similarity=-0.015 Sum_probs=66.1
Q ss_pred CCCcceeEeCCCcEEEEEcCCC-eEEEEEccCCCCCCCceecCCCCceeEEEecCCCc-EEEEecCCCeEEEEEc-CCCc
Q 043355 36 PESRGLHYDDGTKLLISSTSNQ-IFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTK-LIAIQRSSSEIQFWIR-ETSE 112 (143)
Q Consensus 36 ~~~~~vFyDDank~v~avrsgg-v~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~K-iLAIQRs~~sVEFvn~-~~~~ 112 (143)
..++.+-|....+.|++-..+| +.=|.+....+........-.+++|.+++||||++ +|+.--.+..|-+++. +++.
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 91 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS 91 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS
T ss_pred CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc
Confidence 4577788887666666665544 45566632221111222223667999999999999 9999999999999999 8875
Q ss_pred eEEEEecC--CCCcEEEEEecc
Q 043355 113 AFSHRCRS--DSENILGFFWTD 132 (143)
Q Consensus 113 ~~~q~cK~--k~~~IlGF~Wt~ 132 (143)
. +.... ....|.+..|..
T Consensus 92 ~--~~~~~~~~~~~v~~l~~~~ 111 (342)
T 1yfq_A 92 F--QALTNNEANLGICRICKYG 111 (342)
T ss_dssp E--EECBSCCCCSCEEEEEEET
T ss_pred e--EeccccCCCCceEEEEeCC
Confidence 5 34444 677899999987
No 40
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=96.00 E-value=0.098 Score=39.11 Aligned_cols=101 Identities=11% Similarity=0.226 Sum_probs=67.6
Q ss_pred CCCcceeEeC---CCcEEEEEcCC-CeEEEEEccCCCCCCCceec-----CCCCceeEEEecCCCc-EEEEecCCCeEEE
Q 043355 36 PESRGLHYDD---GTKLLISSTSN-QIFSWKTVPFNPLATSTSDS-----IPEGPILSIRFSLDTK-LIAIQRSSSEIQF 105 (143)
Q Consensus 36 ~~~~~vFyDD---ank~v~avrsg-gv~gv~v~~~~p~~~~~~fr-----id~G~I~sIKFS~D~K-iLAIQRs~~sVEF 105 (143)
..++.+-|+. ..+.+++...+ .+.=|.+....+ ...+. -..++|.+++||||++ +|+.--.+..|.+
T Consensus 210 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 286 (357)
T 3i2n_A 210 NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP---TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHL 286 (357)
T ss_dssp SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEET---TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCc---ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEE
Confidence 3467777875 34444444444 444465533222 12222 4667999999999998 8999999999999
Q ss_pred EEcCCCc------------------eEEEEecCCCCcEEEEEeccCCCceEEEE
Q 043355 106 WIRETSE------------------AFSHRCRSDSENILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 106 vn~~~~~------------------~~~q~cK~k~~~IlGF~Wt~~~~cdivlV 141 (143)
++..++. ...+..+.....|.+..|.... +.+++
T Consensus 287 wd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~ 338 (357)
T 3i2n_A 287 WKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDK--RGLCV 338 (357)
T ss_dssp EEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSS--TTEEE
T ss_pred eecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCC--CeEEE
Confidence 9986542 2344555667889999998776 55554
No 41
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=95.99 E-value=0.25 Score=37.86 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=65.8
Q ss_pred CCCCcceeEeCCCcEEEEEcCCC-eEEEEEccCCCCCCCceecC---C---CCceeEEEecCCCcEEEEecCC---CeEE
Q 043355 35 IPESRGLHYDDGTKLLISSTSNQ-IFSWKTVPFNPLATSTSDSI---P---EGPILSIRFSLDTKLIAIQRSS---SEIQ 104 (143)
Q Consensus 35 ~~~~~~vFyDDank~v~avrsgg-v~gv~v~~~~p~~~~~~fri---d---~G~I~sIKFS~D~KiLAIQRs~---~sVE 104 (143)
...++.+-|+... .+++-..+| +.-|.+ . ..+....+.. . .++|.++.||||+++|++--.+ ..|-
T Consensus 186 ~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~--~-~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~ 261 (397)
T 1sq9_A 186 SQFATSVDISERG-LIATGFNNGTVQISEL--S-TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCIT 261 (397)
T ss_dssp CCCCCEEEECTTS-EEEEECTTSEEEEEET--T-TTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEE
T ss_pred CCCceEEEECCCc-eEEEEeCCCcEEEEEC--C-CCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEE
Confidence 3447777787766 665555545 334444 1 1222233333 3 7799999999999999999888 8999
Q ss_pred EEEcCCCceEEEEecC-------------CCCcEEEEEeccCCCceEEE
Q 043355 105 FWIRETSEAFSHRCRS-------------DSENILGFFWTDCPLCDFVV 140 (143)
Q Consensus 105 Fvn~~~~~~~~q~cK~-------------k~~~IlGF~Wt~~~~cdivl 140 (143)
+++..++.... ..+. ....|....|.... ++++
T Consensus 262 i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~ 307 (397)
T 1sq9_A 262 LYETEFGERIG-SLSVPTHSSQASLGEFAHSSWVMSLSFNDSG--ETLC 307 (397)
T ss_dssp EEETTTCCEEE-EECBC--------CCBSBSSCEEEEEECSSS--SEEE
T ss_pred EEECCCCcccc-eeccCcccccccccccccCCcEEEEEECCCC--CEEE
Confidence 99998774332 2333 56779999998765 5544
No 42
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=95.97 E-value=0.19 Score=39.07 Aligned_cols=100 Identities=7% Similarity=0.176 Sum_probs=66.6
Q ss_pred CCCCcceeEeCCCcEEEEE-cCCCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCc-
Q 043355 35 IPESRGLHYDDGTKLLISS-TSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSE- 112 (143)
Q Consensus 35 ~~~~~~vFyDDank~v~av-rsggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~- 112 (143)
...++.+-|....+.|++. ..+.+.=|.+...........+.-..++|.++.||||+++||.--.+..|.+++.+++.
T Consensus 105 ~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~ 184 (345)
T 3fm0_A 105 ENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW 184 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE
T ss_pred CCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE
Confidence 3446677777665666655 33455556662211100011122245689999999999999999999999999987763
Q ss_pred eEEEEecCCCCcEEEEEeccCC
Q 043355 113 AFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 113 ~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
...+..+.....|.+.-|..+.
T Consensus 185 ~~~~~~~~h~~~v~~l~~sp~g 206 (345)
T 3fm0_A 185 VCCATLEGHESTVWSLAFDPSG 206 (345)
T ss_dssp EEEEEECCCSSCEEEEEECTTS
T ss_pred EEEEEecCCCCceEEEEECCCC
Confidence 3445566667889999997665
No 43
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=95.97 E-value=0.4 Score=37.21 Aligned_cols=94 Identities=15% Similarity=0.247 Sum_probs=63.4
Q ss_pred CCcceeEeCCCcEEEEEcCCC-eEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEE
Q 043355 37 ESRGLHYDDGTKLLISSTSNQ-IFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFS 115 (143)
Q Consensus 37 ~~~~vFyDDank~v~avrsgg-v~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~ 115 (143)
.++.+-|+...+.|++--.++ +.=|.+ .. ......+.--.++|.++.||||+++|+.-=.+.+|-+++..++...
T Consensus 208 ~v~~l~~spd~~~l~s~s~dg~i~iwd~--~~-~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~- 283 (321)
T 3ow8_A 208 PIRSLTFSPDSQLLVTASDDGYIKIYDV--QH-ANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV- 283 (321)
T ss_dssp CCCEEEECTTSCEEEEECTTSCEEEEET--TT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-
T ss_pred ceeEEEEcCCCCEEEEEcCCCeEEEEEC--CC-cceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEE-
Confidence 466677776666665554444 334444 11 1111222235668999999999999999999999999999887443
Q ss_pred EEecCCCCcEEEEEeccCC
Q 043355 116 HRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 116 q~cK~k~~~IlGF~Wt~~~ 134 (143)
+........|.+.-|..+.
T Consensus 284 ~~~~~h~~~v~~v~~s~~g 302 (321)
T 3ow8_A 284 HTFFDHQDQVWGVKYNGNG 302 (321)
T ss_dssp EEECCCSSCEEEEEECTTS
T ss_pred EEEcCCCCcEEEEEECCCC
Confidence 3344566789999998765
No 44
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=95.97 E-value=0.36 Score=37.80 Aligned_cols=104 Identities=8% Similarity=0.092 Sum_probs=69.7
Q ss_pred ceecCCCCcceeEeC-CCcEEEEEcCCC-eEEEEEccCCCC----CCCceecCCCCceeEEEecCCC-cEEEEecCCCeE
Q 043355 31 LRCSIPESRGLHYDD-GTKLLISSTSNQ-IFSWKTVPFNPL----ATSTSDSIPEGPILSIRFSLDT-KLIAIQRSSSEI 103 (143)
Q Consensus 31 lR~~~~~~~~vFyDD-ank~v~avrsgg-v~gv~v~~~~p~----~~~~~frid~G~I~sIKFS~D~-KiLAIQRs~~sV 103 (143)
|+-+...++.+=|.. ..+.|++-..+| +.=|.+...... ++...+.-..++|.+++|+||+ ++|+.--.+..|
T Consensus 77 ~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i 156 (402)
T 2aq5_A 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156 (402)
T ss_dssp BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCE
T ss_pred EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEE
Confidence 333455678888887 444555544444 555666222111 2334444467799999999998 699999899999
Q ss_pred EEEEcCCCceEEEEe-cCCCCcEEEEEeccCC
Q 043355 104 QFWIRETSEAFSHRC-RSDSENILGFFWTDCP 134 (143)
Q Consensus 104 EFvn~~~~~~~~q~c-K~k~~~IlGF~Wt~~~ 134 (143)
.+++.+++......- +.....|.+..|..+.
T Consensus 157 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 188 (402)
T 2aq5_A 157 LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG 188 (402)
T ss_dssp EEEETTTTEEEEEECTTTCCSCEEEEEECTTS
T ss_pred EEEECCCCCccEEEecCCCCCceEEEEECCCC
Confidence 999998875443322 4566789999998655
No 45
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=95.94 E-value=0.31 Score=37.30 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=64.3
Q ss_pred CCCcceeEeCCCcEEEEEcCC----CeEEEEEccCCCCCCCceecC-------------CCCceeEEEecCCCcEEEEec
Q 043355 36 PESRGLHYDDGTKLLISSTSN----QIFSWKTVPFNPLATSTSDSI-------------PEGPILSIRFSLDTKLIAIQR 98 (143)
Q Consensus 36 ~~~~~vFyDDank~v~avrsg----gv~gv~v~~~~p~~~~~~fri-------------d~G~I~sIKFS~D~KiLAIQR 98 (143)
..++.+-|+...+.|++...+ .+.=|.+.. .+....+.- .+++|.++.||||+++||.--
T Consensus 234 ~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 310 (397)
T 1sq9_A 234 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF---GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG 310 (397)
T ss_dssp CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT---CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE
T ss_pred CccceEEECCCCCEEEEEecCCCCceEEEEECCC---CcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe
Confidence 347778887766666666443 333344311 122233333 467999999999999999999
Q ss_pred CCCeEEEEEcCCCceEEEEec------CC---------------CCcEEEEEeccC
Q 043355 99 SSSEIQFWIRETSEAFSHRCR------SD---------------SENILGFFWTDC 133 (143)
Q Consensus 99 s~~sVEFvn~~~~~~~~q~cK------~k---------------~~~IlGF~Wt~~ 133 (143)
.+..|-+++..++... +..+ .. ...|.+..|...
T Consensus 311 ~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~ 365 (397)
T 1sq9_A 311 WDGKLRFWDVKTKERI-TTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK 365 (397)
T ss_dssp TTSEEEEEETTTTEEE-EEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECT
T ss_pred CCCeEEEEEcCCCcee-EEEecccCcccchhhhhccccccccccCCceeEEEeccc
Confidence 9999999999887433 3333 33 677999999876
No 46
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=95.93 E-value=0.22 Score=39.25 Aligned_cols=79 Identities=9% Similarity=0.228 Sum_probs=55.2
Q ss_pred cEEEEEcCCC-eEEEEEccCCCCCCCceecC-CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEEEecCCCCcE
Q 043355 48 KLLISSTSNQ-IFSWKTVPFNPLATSTSDSI-PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENI 125 (143)
Q Consensus 48 k~v~avrsgg-v~gv~v~~~~p~~~~~~fri-d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~I 125 (143)
+.+++...+| +.=|.+ . ..+....+.. .+++|.+++||||+++||+--.+..|.+++.+++.... ..+.....|
T Consensus 104 ~~l~~~~~d~~v~lw~~--~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v 179 (401)
T 4aez_A 104 LNVVAVALERNVYVWNA--D-SGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR-TMAGHQARV 179 (401)
T ss_dssp TSEEEEEETTEEEEEET--T-TCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-EECCCSSCE
T ss_pred CCEEEEECCCeEEEeeC--C-CCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEE-EecCCCCce
Confidence 4456664444 444555 2 1222233344 56799999999999999999999999999998875433 334567789
Q ss_pred EEEEe
Q 043355 126 LGFFW 130 (143)
Q Consensus 126 lGF~W 130 (143)
..+.|
T Consensus 180 ~~~~~ 184 (401)
T 4aez_A 180 GCLSW 184 (401)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99999
No 47
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=95.90 E-value=0.24 Score=40.20 Aligned_cols=97 Identities=11% Similarity=0.189 Sum_probs=62.5
Q ss_pred CCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEE
Q 043355 37 ESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSH 116 (143)
Q Consensus 37 ~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q 116 (143)
.++.+-|....+.|.+...+|...+-- . ..+....+.-.+++|.+++||||++.||.--.+..|.+++.. + +..+
T Consensus 346 ~v~~~~~s~~g~~l~~~~~dg~v~~~~--~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~-~~~~ 420 (577)
T 2ymu_A 346 SVWGVAFSPDGQTIASASDDKTVKLWN--R-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQ 420 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEE--T-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-C-CEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEc--C-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-C-CEEE
Confidence 355566666556665555555332211 1 111122233356799999999999999999889999999853 3 3445
Q ss_pred EecCCCCcEEEEEeccCCCceEEE
Q 043355 117 RCRSDSENILGFFWTDCPLCDFVV 140 (143)
Q Consensus 117 ~cK~k~~~IlGF~Wt~~~~cdivl 140 (143)
..+..+..|.+..|..+. +.++
T Consensus 421 ~~~~~~~~v~~~~~s~d~--~~l~ 442 (577)
T 2ymu_A 421 TLTGHSSSVWGVAFSPDD--QTIA 442 (577)
T ss_dssp EEECCSSCEEEEEECTTS--SEEE
T ss_pred EecCCCCCeEEEEECCCC--CEEE
Confidence 556667789998887665 4443
No 48
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=95.89 E-value=0.18 Score=40.93 Aligned_cols=96 Identities=14% Similarity=0.276 Sum_probs=63.0
Q ss_pred CCcceeEeCCCcEEEEEcCCCeEE-EEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEE
Q 043355 37 ESRGLHYDDGTKLLISSTSNQIFS-WKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFS 115 (143)
Q Consensus 37 ~~~~vFyDDank~v~avrsggv~g-v~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~ 115 (143)
.++.+-|+...+.|.+...++... |.. . .+....+.-..++|.++.||||+++||.-=.+..|.+++. ++ +..
T Consensus 469 ~v~~~~~spd~~~las~~~d~~i~iw~~--~--~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~-~~~ 542 (577)
T 2ymu_A 469 SVRGVAFSPDGQTIASASDDKTVKLWNR--N--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG-QLL 542 (577)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEET--T--SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TS-CEE
T ss_pred CEEEEEEcCCCCEEEEEeCCCEEEEEcC--C--CCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CC-CEE
Confidence 355566665555555554444322 222 1 1112223335679999999999999999888999999996 33 445
Q ss_pred EEecCCCCcEEEEEeccCCCceEEE
Q 043355 116 HRCRSDSENILGFFWTDCPLCDFVV 140 (143)
Q Consensus 116 q~cK~k~~~IlGF~Wt~~~~cdivl 140 (143)
+..+.....|.+..|.... +.++
T Consensus 543 ~~~~~h~~~v~~~~fs~dg--~~l~ 565 (577)
T 2ymu_A 543 QTLTGHSSSVWGVAFSPDG--QTIA 565 (577)
T ss_dssp EEEECCSSCEEEEEECTTS--SCEE
T ss_pred EEEcCCCCCEEEEEEcCCC--CEEE
Confidence 5666778889999998765 5443
No 49
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=95.83 E-value=0.26 Score=35.95 Aligned_cols=71 Identities=15% Similarity=0.119 Sum_probs=45.2
Q ss_pred CcceeEeCC---CcEEEEEcCCCeEEEEEccCCCCCCC-ceecC--CCCceeEEEecCCC----cEEEEecCCCeEEEEE
Q 043355 38 SRGLHYDDG---TKLLISSTSNQIFSWKTVPFNPLATS-TSDSI--PEGPILSIRFSLDT----KLIAIQRSSSEIQFWI 107 (143)
Q Consensus 38 ~~~vFyDDa---nk~v~avrsggv~gv~v~~~~p~~~~-~~fri--d~G~I~sIKFS~D~----KiLAIQRs~~sVEFvn 107 (143)
+..+-|... .+.+++-..++..-|.. . ..... ....+ .+++|.++.||||+ ++||.--.+..|.+++
T Consensus 170 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~~--~-~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd 246 (351)
T 3f3f_A 170 DFCLSWCPSRFSPEKLAVSALEQAIIYQR--G-KDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFK 246 (351)
T ss_dssp CEEEEECCCSSSCCEEEEEETTEEEEEEE--C-TTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEE
T ss_pred eeEEEeccCCCCCcEEEEecCCCcEEEEc--c-CCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEe
Confidence 344444443 44555555565554443 2 12221 12223 56799999999998 8999999999999999
Q ss_pred cCCC
Q 043355 108 RETS 111 (143)
Q Consensus 108 ~~~~ 111 (143)
..++
T Consensus 247 ~~~~ 250 (351)
T 3f3f_A 247 ITEK 250 (351)
T ss_dssp EEEC
T ss_pred CCCC
Confidence 8553
No 50
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.15 Score=39.16 Aligned_cols=96 Identities=16% Similarity=0.239 Sum_probs=64.3
Q ss_pred cCCCCcceeEeCC-CcEEEEEcC-CCeEEEEEccCCCCCCCceecCC------CCceeEEEecCCC-cEEEEecCCC---
Q 043355 34 SIPESRGLHYDDG-TKLLISSTS-NQIFSWKTVPFNPLATSTSDSIP------EGPILSIRFSLDT-KLIAIQRSSS--- 101 (143)
Q Consensus 34 ~~~~~~~vFyDDa-nk~v~avrs-ggv~gv~v~~~~p~~~~~~frid------~G~I~sIKFS~D~-KiLAIQRs~~--- 101 (143)
....++.+-|... ...+++... +.+.-|.+.. .+....+... +++|.++.||||+ ++|+.--.+.
T Consensus 164 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~ 240 (416)
T 2pm9_A 164 SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA---KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDP 240 (416)
T ss_dssp SSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT---TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSC
T ss_pred CCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC---CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCc
Confidence 3345777888776 455555444 4455565521 2223344443 6799999999997 6888888877
Q ss_pred eEEEEEcCCCceEEEEec-CCCCcEEEEEecc
Q 043355 102 EIQFWIRETSEAFSHRCR-SDSENILGFFWTD 132 (143)
Q Consensus 102 sVEFvn~~~~~~~~q~cK-~k~~~IlGF~Wt~ 132 (143)
.|.+++..++....+..+ .....|.+..|..
T Consensus 241 ~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~ 272 (416)
T 2pm9_A 241 SILIWDLRNANTPLQTLNQGHQKGILSLDWCH 272 (416)
T ss_dssp CCCEEETTSTTSCSBCCCSCCSSCEEEEEECS
T ss_pred eEEEEeCCCCCCCcEEeecCccCceeEEEeCC
Confidence 999999987644444444 5567799999976
No 51
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=95.76 E-value=0.23 Score=38.61 Aligned_cols=97 Identities=13% Similarity=0.205 Sum_probs=65.7
Q ss_pred CCCcceeEeCCCcEEEEEcC-CCeEEEEEccCCCC-CCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCce
Q 043355 36 PESRGLHYDDGTKLLISSTS-NQIFSWKTVPFNPL-ATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEA 113 (143)
Q Consensus 36 ~~~~~vFyDDank~v~avrs-ggv~gv~v~~~~p~-~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~ 113 (143)
..++.+=|....+.|++--. +.+.=|.+ .... +....+.--+++|.++.||||+++||.--.+.+|-+++..++.+
T Consensus 62 ~~v~~~~~sp~g~~l~s~s~D~~v~iw~~--~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~ 139 (345)
T 3fm0_A 62 RTVRKVAWSPCGNYLASASFDATTCIWKK--NQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE 139 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEE--CCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC
T ss_pred CcEEEEEECCCCCEEEEEECCCcEEEEEc--cCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC
Confidence 34667777766666665533 44445655 2111 11223333567999999999999999999999999999976643
Q ss_pred --EEEEecCCCCcEEEEEeccCC
Q 043355 114 --FSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 114 --~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
..+..+.....|....|..+.
T Consensus 140 ~~~~~~~~~h~~~v~~~~~~p~~ 162 (345)
T 3fm0_A 140 YECVSVLNSHTQDVKHVVWHPSQ 162 (345)
T ss_dssp EEEEEEECCCCSCEEEEEECSSS
T ss_pred eEEEEEecCcCCCeEEEEECCCC
Confidence 344555667779999997665
No 52
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=95.66 E-value=0.23 Score=39.88 Aligned_cols=98 Identities=6% Similarity=0.001 Sum_probs=67.0
Q ss_pred CCCcceeEeCCCcEEEEEcC-CCeEEEEEccCCCCC-CCceecCCCCceeEEEecCC---CcEEEEecCCCeEEEEEcCC
Q 043355 36 PESRGLHYDDGTKLLISSTS-NQIFSWKTVPFNPLA-TSTSDSIPEGPILSIRFSLD---TKLIAIQRSSSEIQFWIRET 110 (143)
Q Consensus 36 ~~~~~vFyDDank~v~avrs-ggv~gv~v~~~~p~~-~~~~frid~G~I~sIKFS~D---~KiLAIQRs~~sVEFvn~~~ 110 (143)
..++.+-|+...+.|++... |.+.-|.+....... ....+.-..++|.++.|||| +++|+.--.+..|-+++..+
T Consensus 150 ~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~ 229 (450)
T 2vdu_B 150 KRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ 229 (450)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred CCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence 34677888877677766644 445455552111111 11122225679999999999 99999998899999999988
Q ss_pred CceEEEEecCCCCcEEEEEeccCC
Q 043355 111 SEAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 111 ~~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
+......+......|.+..|. +.
T Consensus 230 ~~~~~~~~~~h~~~v~~~~~s-d~ 252 (450)
T 2vdu_B 230 CFIVDKWLFGHKHFVSSICCG-KD 252 (450)
T ss_dssp TTCEEEECCCCSSCEEEEEEC-ST
T ss_pred CceeeeeecCCCCceEEEEEC-CC
Confidence 866555566667789999998 44
No 53
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.64 E-value=0.27 Score=44.40 Aligned_cols=94 Identities=16% Similarity=0.196 Sum_probs=66.6
Q ss_pred CCCcceeEeCCCcEEEEEcCCC-eEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceE
Q 043355 36 PESRGLHYDDGTKLLISSTSNQ-IFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAF 114 (143)
Q Consensus 36 ~~~~~vFyDDank~v~avrsgg-v~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~ 114 (143)
..++.+=|....+.|.+...+| +.=|.+ . .......+.-..++|.++.||||+++||.--.+.+|-+++..++..
T Consensus 616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~--~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~- 691 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCGADKTLQVFKA--E-TGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL- 691 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEET--T-TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEEC--C-CCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCce-
Confidence 4466777877777777665555 334544 2 1222334444677999999999999999999999999999988743
Q ss_pred EEEecCCCCcEEEEEeccC
Q 043355 115 SHRCRSDSENILGFFWTDC 133 (143)
Q Consensus 115 ~q~cK~k~~~IlGF~Wt~~ 133 (143)
.+..+.....|....|...
T Consensus 692 ~~~~~~~~~~v~~~~~~~~ 710 (1249)
T 3sfz_A 692 VHTYDEHSEQVNCCHFTNK 710 (1249)
T ss_dssp EEEEECCSSCEEEEEECSS
T ss_pred EEEEcCCCCcEEEEEEecC
Confidence 3444556777888888764
No 54
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=95.51 E-value=0.17 Score=40.62 Aligned_cols=97 Identities=13% Similarity=0.281 Sum_probs=64.5
Q ss_pred CCCcceeEeCCCcEEE-EEcCCC-eEEEEEccCCCCCCCceecCCCCceeEEEecCCCc-EEEEecCCCeEEEEEcCCC-
Q 043355 36 PESRGLHYDDGTKLLI-SSTSNQ-IFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTK-LIAIQRSSSEIQFWIRETS- 111 (143)
Q Consensus 36 ~~~~~vFyDDank~v~-avrsgg-v~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~K-iLAIQRs~~sVEFvn~~~~- 111 (143)
..++.+-|....+.++ +-..+| +.=|.+ .....+...+.-..++|.+|+||||++ +||.-..+..|-+++....
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~--~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~ 355 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGSADKTVALWDL--RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEET--TCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEeC--CCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 4467777777666444 433344 334444 222333445555678999999999994 8999999999999999552
Q ss_pred c------------eEEEEecCCCCcEEEEEeccCC
Q 043355 112 E------------AFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 112 ~------------~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
. +...........|..+.|..+.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 390 (430)
T 2xyi_A 356 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 390 (430)
T ss_dssp CCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSS
T ss_pred cccCccccccCCcceEEEcCCCCCCceEEEECCCC
Confidence 1 2233333446679999998876
No 55
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=95.47 E-value=0.59 Score=35.91 Aligned_cols=104 Identities=10% Similarity=0.079 Sum_probs=59.7
Q ss_pred CCcceeEeCCCcEEEEEcC--CCeEEEEEccCCC-C--C------CCceecCCCC-ceeEEEecCCCcEEEEec-CCCeE
Q 043355 37 ESRGLHYDDGTKLLISSTS--NQIFSWKTVPFNP-L--A------TSTSDSIPEG-PILSIRFSLDTKLIAIQR-SSSEI 103 (143)
Q Consensus 37 ~~~~vFyDDank~v~avrs--ggv~gv~v~~~~p-~--~------~~~~frid~G-~I~sIKFS~D~KiLAIQR-s~~sV 103 (143)
....+-|+...+.|++... +.+.-|.+...+. . + .+....+..| .+..+.||||++.|++-- .+.+|
T Consensus 156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v 235 (361)
T 3scy_A 156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTV 235 (361)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEE
T ss_pred cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeE
Confidence 3455788877777776643 3344455522211 0 1 0123334444 678999999999776654 68889
Q ss_pred EEEEcCCCce-EEEEecC---CCCcEEEEEeccCCCceEEEEe
Q 043355 104 QFWIRETSEA-FSHRCRS---DSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 104 EFvn~~~~~~-~~q~cK~---k~~~IlGF~Wt~~~~cdivlVT 142 (143)
..++..++.. ..+.... ......+..|.... +.++++
T Consensus 236 ~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg--~~l~v~ 276 (361)
T 3scy_A 236 IAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDG--KYLYAS 276 (361)
T ss_dssp EEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTS--SEEEEE
T ss_pred EEEEecCCceEEeEEEecCCCCCCCcccEEECCCC--CEEEEE
Confidence 9999876622 2222211 12335677777666 666665
No 56
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.57 Score=35.08 Aligned_cols=97 Identities=7% Similarity=0.129 Sum_probs=66.0
Q ss_pred CCCcceeEeCC--CcEEEEEcCCC-eEEEEEccCCCCCCCceecCCCCceeEEEecC-------------CCcEEEEecC
Q 043355 36 PESRGLHYDDG--TKLLISSTSNQ-IFSWKTVPFNPLATSTSDSIPEGPILSIRFSL-------------DTKLIAIQRS 99 (143)
Q Consensus 36 ~~~~~vFyDDa--nk~v~avrsgg-v~gv~v~~~~p~~~~~~frid~G~I~sIKFS~-------------D~KiLAIQRs 99 (143)
..++.+-|... .+.+++...+| +.-|.+... .......+.-..++|.++.|+| |+++|+.--.
T Consensus 102 ~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (379)
T 3jrp_A 102 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN-GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 180 (379)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSEEEEEECCTT-SCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEET
T ss_pred cceEEEEeCCCCCCCEEEEecCCCcEEEEecCCC-CceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeC
Confidence 44666777665 55666654444 444555211 1222333334677999999999 7999999999
Q ss_pred CCeEEEEEcCCCc---eEEEEecCCCCcEEEEEeccC
Q 043355 100 SSEIQFWIRETSE---AFSHRCRSDSENILGFFWTDC 133 (143)
Q Consensus 100 ~~sVEFvn~~~~~---~~~q~cK~k~~~IlGF~Wt~~ 133 (143)
+..|.+++..++. ...+..+.....|.+..|...
T Consensus 181 dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 217 (379)
T 3jrp_A 181 DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 217 (379)
T ss_dssp TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred CCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCC
Confidence 9999999996652 344555666788999999877
No 57
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=95.42 E-value=0.24 Score=38.41 Aligned_cols=56 Identities=7% Similarity=0.108 Sum_probs=46.3
Q ss_pred CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEEEecCCCCcEEEEEeccCC
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
..++|.+++||||+++||.--.+.+|-+++..++... +..+.....|.+..|....
T Consensus 138 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~h~~~v~~~~~~~~~ 193 (420)
T 3vl1_A 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP-RTLIGHRATVTDIAIIDRG 193 (420)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC-EEEECCSSCEEEEEEETTT
T ss_pred ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc-eEEcCCCCcEEEEEEcCCC
Confidence 6679999999999999999999999999999877433 3335567789999998665
No 58
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=95.40 E-value=0.27 Score=38.06 Aligned_cols=94 Identities=11% Similarity=0.114 Sum_probs=61.8
Q ss_pred CCCcceeEeCCCcEEEEEcCCC-eEEEEEccCCCCCCCceecC-CCCceeEEEecCCCc-EEEEecCCCeEEEEEcCCCc
Q 043355 36 PESRGLHYDDGTKLLISSTSNQ-IFSWKTVPFNPLATSTSDSI-PEGPILSIRFSLDTK-LIAIQRSSSEIQFWIRETSE 112 (143)
Q Consensus 36 ~~~~~vFyDDank~v~avrsgg-v~gv~v~~~~p~~~~~~fri-d~G~I~sIKFS~D~K-iLAIQRs~~sVEFvn~~~~~ 112 (143)
..++.+-|+...+.|++-..+| +.=|.+ .. .+....+.. ..++|.+++||||++ +|+.--.+..|.+++..++.
T Consensus 248 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~--~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 248 SKKNNLEFGTYGKYVIAGHVSGVITVHNV--FS-KEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE 324 (420)
T ss_dssp CCCCTTCSSCTTEEEEEEETTSCEEEEET--TT-CCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred CcccceEEcCCCCEEEEEcCCCeEEEEEC--CC-CceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc
Confidence 4456666766666676665555 444555 21 222333333 456999999999998 99999999999999998874
Q ss_pred e-EEEEecCCCCcEEEEEecc
Q 043355 113 A-FSHRCRSDSENILGFFWTD 132 (143)
Q Consensus 113 ~-~~q~cK~k~~~IlGF~Wt~ 132 (143)
. ...........|...+|-+
T Consensus 325 ~~~~~~~~~~~~~v~~~~~~~ 345 (420)
T 3vl1_A 325 CPVGEFLINEGTPINNVYFAA 345 (420)
T ss_dssp SCSEEEEESTTSCEEEEEEET
T ss_pred CchhhhhccCCCCceEEEeCC
Confidence 4 2222222456677777764
No 59
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=95.39 E-value=0.37 Score=37.00 Aligned_cols=96 Identities=13% Similarity=0.194 Sum_probs=63.3
Q ss_pred CCCcceeEeCCC-cEEEEEcCC----CeEEEEEccCCCCCCCceec-CCCCceeEEEecC-CCcEEEEecCCCeEEEEEc
Q 043355 36 PESRGLHYDDGT-KLLISSTSN----QIFSWKTVPFNPLATSTSDS-IPEGPILSIRFSL-DTKLIAIQRSSSEIQFWIR 108 (143)
Q Consensus 36 ~~~~~vFyDDan-k~v~avrsg----gv~gv~v~~~~p~~~~~~fr-id~G~I~sIKFS~-D~KiLAIQRs~~sVEFvn~ 108 (143)
..++.+-|+..+ ..+++...+ .+.-|.+ .........+. -..++|.++.||| |+++|+.--.+..|.+++.
T Consensus 215 ~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~ 292 (416)
T 2pm9_A 215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDL--RNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP 292 (416)
T ss_dssp CCEEEEEECSSCTTEEEEEECCSSSCCCCEEET--TSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECS
T ss_pred CceEEEEECCCCCCEEEEEECCCCCceEEEEeC--CCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeC
Confidence 346666676665 344444444 4555555 22222333444 3566999999999 9999999999999999999
Q ss_pred CCCceEEEEecCCCCcEEEEEeccCC
Q 043355 109 ETSEAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 109 ~~~~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
.++... +..+.....|....|....
T Consensus 293 ~~~~~~-~~~~~~~~~v~~~~~s~~~ 317 (416)
T 2pm9_A 293 ESAEQL-SQFPARGNWCFKTKFAPEA 317 (416)
T ss_dssp SSCCEE-EEEECSSSCCCCEEECTTC
T ss_pred CCCccc-eeecCCCCceEEEEECCCC
Confidence 887443 3334455678888887653
No 60
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=95.38 E-value=0.2 Score=37.40 Aligned_cols=95 Identities=12% Similarity=0.052 Sum_probs=66.6
Q ss_pred CCCCcceeEeCCCcEEEEEc-----CCCeEEEEEccCCCCCCCceecC-CCCceeEEEecCC---CcEEEEecCCCeEEE
Q 043355 35 IPESRGLHYDDGTKLLISST-----SNQIFSWKTVPFNPLATSTSDSI-PEGPILSIRFSLD---TKLIAIQRSSSEIQF 105 (143)
Q Consensus 35 ~~~~~~vFyDDank~v~avr-----sggv~gv~v~~~~p~~~~~~fri-d~G~I~sIKFS~D---~KiLAIQRs~~sVEF 105 (143)
...++.+-|...++.+++.- .+.+.=|.+ .+.. ....... .+++|.++.|||| +++||.--.+..|-+
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~--~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 94 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEI--QHGD-LKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHI 94 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEE--CSSS-EEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEE
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeC--CCCc-ccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEE
Confidence 34577787887777777664 234444665 2111 1112223 5679999999999 699999999999999
Q ss_pred EEcCCCceEEEEecCCCCcEEEEEecc
Q 043355 106 WIRETSEAFSHRCRSDSENILGFFWTD 132 (143)
Q Consensus 106 vn~~~~~~~~q~cK~k~~~IlGF~Wt~ 132 (143)
++.+++....+..+.....|.+..|..
T Consensus 95 wd~~~~~~~~~~~~~~~~~v~~~~~~~ 121 (357)
T 3i2n_A 95 WNLEAPEMPVYSVKGHKEIINAIDGIG 121 (357)
T ss_dssp ECTTSCSSCSEEECCCSSCEEEEEEES
T ss_pred EeCCCCCccEEEEEecccceEEEeecc
Confidence 999888645556666778899998853
No 61
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=95.33 E-value=0.55 Score=36.27 Aligned_cols=93 Identities=12% Similarity=0.190 Sum_probs=61.7
Q ss_pred CCcceeEeCCCcEEEEEcC-CCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEE
Q 043355 37 ESRGLHYDDGTKLLISSTS-NQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFS 115 (143)
Q Consensus 37 ~~~~vFyDDank~v~avrs-ggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~ 115 (143)
.++.+.|.+.++ +++... +.+.=|.+ . .......+.-..++|.++.||||+++|+.--.+.+|-+++..++.. .
T Consensus 145 ~v~~~~~~~~~~-l~s~s~d~~i~~wd~--~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~-~ 219 (340)
T 1got_B 145 YLSCCRFLDDNQ-IVTSSGDTTCALWDI--E-TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC-R 219 (340)
T ss_dssp CEEEEEEEETTE-EEEEETTSCEEEEET--T-TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE-E
T ss_pred cEEEEEECCCCc-EEEEECCCcEEEEEC--C-CCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCee-E
Confidence 355565655555 444433 44444554 1 1122233334677999999999999999999999999999987743 2
Q ss_pred EEecCCCCcEEEEEeccCC
Q 043355 116 HRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 116 q~cK~k~~~IlGF~Wt~~~ 134 (143)
+..+.....|.+..|..+.
T Consensus 220 ~~~~~h~~~v~~v~~~p~~ 238 (340)
T 1got_B 220 QTFTGHESDINAICFFPNG 238 (340)
T ss_dssp EEECCCSSCEEEEEECTTS
T ss_pred EEEcCCcCCEEEEEEcCCC
Confidence 3445556778888887665
No 62
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=95.30 E-value=0.2 Score=39.55 Aligned_cols=93 Identities=11% Similarity=0.110 Sum_probs=60.8
Q ss_pred CCcceeEeCCCcEEEEEcC-CCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEE
Q 043355 37 ESRGLHYDDGTKLLISSTS-NQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFS 115 (143)
Q Consensus 37 ~~~~vFyDDank~v~avrs-ggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~ 115 (143)
.++.+-||. ..+++... |.+.-|.+ .........+.-..++|.++.||||+++||+--.+..|-+++..++...
T Consensus 178 ~v~~~~~~~--~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~- 252 (401)
T 4aez_A 178 RVGCLSWNR--HVLSSGSRSGAIHHHDV--RIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPK- 252 (401)
T ss_dssp CEEEEEEET--TEEEEEETTSEEEEEET--TSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEE-
T ss_pred ceEEEEECC--CEEEEEcCCCCEEEEec--ccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCcc-
Confidence 355566643 34444433 44444554 2122223344447789999999999999999999999999999876433
Q ss_pred EEecCCCCcEEEEEeccCC
Q 043355 116 HRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 116 q~cK~k~~~IlGF~Wt~~~ 134 (143)
.........|.+..|....
T Consensus 253 ~~~~~~~~~v~~~~~~p~~ 271 (401)
T 4aez_A 253 FTKTNHNAAVKAVAWCPWQ 271 (401)
T ss_dssp EEECCCSSCCCEEEECTTS
T ss_pred EEecCCcceEEEEEECCCC
Confidence 2344456778888887643
No 63
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=95.28 E-value=0.29 Score=41.51 Aligned_cols=57 Identities=9% Similarity=0.180 Sum_probs=45.9
Q ss_pred CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEE-EEecCC-CCcEEEEEeccCC
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFS-HRCRSD-SENILGFFWTDCP 134 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~-q~cK~k-~~~IlGF~Wt~~~ 134 (143)
-.++|.++.||||+++||.-=.+.+|-+++.+++.... ...... ...|.+..|....
T Consensus 535 H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~ 593 (611)
T 1nr0_A 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET 593 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETT
T ss_pred cccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCC
Confidence 45699999999999999999999999999998775332 333344 5679999998776
No 64
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=95.25 E-value=0.46 Score=35.61 Aligned_cols=102 Identities=13% Similarity=0.048 Sum_probs=59.4
Q ss_pred CCcceeEeCCCcEEEEEcCCC-----eEEEEEccCCCCCCCceecC-CCCceeEEEecCCCc-EEEEecCCCeEEEEEcC
Q 043355 37 ESRGLHYDDGTKLLISSTSNQ-----IFSWKTVPFNPLATSTSDSI-PEGPILSIRFSLDTK-LIAIQRSSSEIQFWIRE 109 (143)
Q Consensus 37 ~~~~vFyDDank~v~avrsgg-----v~gv~v~~~~p~~~~~~fri-d~G~I~sIKFS~D~K-iLAIQRs~~sVEFvn~~ 109 (143)
+...+-|+...+.|++...++ --.+.+ .+++.....-.+ ..+.+.++.||||++ ++.....+..|..++..
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~--~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYR--LDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEE--ECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEE--EcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 356677888888888776442 122333 223222222223 233577999999998 55556667899999998
Q ss_pred CCceEEE-EecCCC-------CcEEEEEeccCCCceEEEEe
Q 043355 110 TSEAFSH-RCRSDS-------ENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 110 ~~~~~~q-~cK~k~-------~~IlGF~Wt~~~~cdivlVT 142 (143)
++..... ...... ..+.++.|.... +.++++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~ 158 (353)
T 3vgz_A 120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDAT--NTVYIS 158 (353)
T ss_dssp TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTT--TEEEEE
T ss_pred CCeeEEEEecCCCccccccCCCCCceEEECCCC--CEEEEE
Confidence 8754332 221111 126777776665 555554
No 65
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=95.25 E-value=0.41 Score=36.80 Aligned_cols=103 Identities=15% Similarity=0.162 Sum_probs=68.2
Q ss_pred ceecCCCCcceeEeCCC-cEEEEEcC-CCeEEEEEccCCC--CCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEE
Q 043355 31 LRCSIPESRGLHYDDGT-KLLISSTS-NQIFSWKTVPFNP--LATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFW 106 (143)
Q Consensus 31 lR~~~~~~~~vFyDDan-k~v~avrs-ggv~gv~v~~~~p--~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFv 106 (143)
|+-+...++.+-|.... +.|++--. +-+.-|.+..... ..+...+.-..++|.++.||||+++|+.-=.+.+|-++
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~w 92 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 33344556777676544 45555533 4455577733211 11122333467799999999999999999999999999
Q ss_pred EcCCCceEEEEecCCCCcEEEEEeccCC
Q 043355 107 IRETSEAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 107 n~~~~~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
+.+++... +..+.....|....|....
T Consensus 93 d~~~~~~~-~~~~~h~~~v~~~~~~~~~ 119 (319)
T 3frx_A 93 DVATGETY-QRFVGHKSDVMSVDIDKKA 119 (319)
T ss_dssp ETTTTEEE-EEEECCSSCEEEEEECTTS
T ss_pred ECCCCCee-EEEccCCCcEEEEEEcCCC
Confidence 99888543 3445566778888887665
No 66
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=95.23 E-value=0.48 Score=37.11 Aligned_cols=101 Identities=13% Similarity=0.169 Sum_probs=66.1
Q ss_pred CCCcceeEeCCC-cEEEEEcC-CCeEEEEEccCCCCCCCcee--cCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCC
Q 043355 36 PESRGLHYDDGT-KLLISSTS-NQIFSWKTVPFNPLATSTSD--SIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETS 111 (143)
Q Consensus 36 ~~~~~vFyDDan-k~v~avrs-ggv~gv~v~~~~p~~~~~~f--rid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~ 111 (143)
..++.+-|.... ..+++... +.+.=|.+ . ..+....+ .-..++|.++.||||+++|+.--.+..|-+++..++
T Consensus 132 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~--~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 208 (402)
T 2aq5_A 132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDV--G-TGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG 208 (402)
T ss_dssp SCEEEEEECSSBTTEEEEEETTSCEEEEET--T-TTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT
T ss_pred CeEEEEEECcCCCCEEEEEcCCCEEEEEEC--C-CCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC
Confidence 346667676664 45555544 44555665 2 12223344 235679999999999999999999999999999887
Q ss_pred ceEEEEecCC-CCcEEEEEeccCCCceEEEE
Q 043355 112 EAFSHRCRSD-SENILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 112 ~~~~q~cK~k-~~~IlGF~Wt~~~~cdivlV 141 (143)
......-+.. ...+....|..+. .++.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~ 237 (402)
T 2aq5_A 209 TVVAEKDRPHEGTRPVHAVFVSEG--KILTT 237 (402)
T ss_dssp EEEEEEECSSCSSSCCEEEECSTT--EEEEE
T ss_pred ceeeeeccCCCCCcceEEEEcCCC--cEEEE
Confidence 5443331222 3347888888776 66654
No 67
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=95.21 E-value=0.54 Score=37.66 Aligned_cols=95 Identities=13% Similarity=0.128 Sum_probs=66.6
Q ss_pred CCCcceeEeCCCcEEEEEcCCC-eEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceE
Q 043355 36 PESRGLHYDDGTKLLISSTSNQ-IFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAF 114 (143)
Q Consensus 36 ~~~~~vFyDDank~v~avrsgg-v~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~ 114 (143)
..++.+-|....+.+++--.+| +.=|.+ . ..+....+.--.++|.++.||||+++||.--.+.+|-+++..++. .
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~--~-~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~-~ 184 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDY--E-TGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE-C 184 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEET--T-TCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC-E
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEC--C-CCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-e
Confidence 4477787887777777765544 444554 2 122233444466799999999999999999999999999997653 2
Q ss_pred EEEecCCCCcEEEEEeccCC
Q 043355 115 SHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 115 ~q~cK~k~~~IlGF~Wt~~~ 134 (143)
.+..+.....|.+..|..+.
T Consensus 185 ~~~~~~h~~~V~~v~~~p~~ 204 (410)
T 1vyh_C 185 IRTMHGHDHNVSSVSIMPNG 204 (410)
T ss_dssp EECCCCCSSCEEEEEECSSS
T ss_pred eEEEcCCCCCEEEEEEeCCC
Confidence 33445556678888887765
No 68
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=95.18 E-value=0.34 Score=34.65 Aligned_cols=56 Identities=14% Similarity=0.109 Sum_probs=37.5
Q ss_pred CCCceeEEEecCCCcEEEEec-CCCeEEEEEcC-CCceEEEEecCCCCcEEEEEeccCC
Q 043355 78 PEGPILSIRFSLDTKLIAIQR-SSSEIQFWIRE-TSEAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQR-s~~sVEFvn~~-~~~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
..+.+.++.||||++.|++.- .+..+.++... ++.+.. ........+....|..+.
T Consensus 171 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~s~dg 228 (297)
T 2ojh_A 171 GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE-RITDSAYGDWFPHPSPSG 228 (297)
T ss_dssp SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE-ECCCCSEEEEEEEECTTS
T ss_pred CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcE-EEecCCcccCCeEECCCC
Confidence 556899999999999888765 36677877774 333332 223334567778887654
No 69
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=95.13 E-value=0.19 Score=39.45 Aligned_cols=62 Identities=15% Similarity=0.278 Sum_probs=49.2
Q ss_pred CCCCceeEEEecCCCcEEEEecCCCe-EEEEEcCCCceEEEEecC-CCCcEEEEEeccCCCceEEE
Q 043355 77 IPEGPILSIRFSLDTKLIAIQRSSSE-IQFWIRETSEAFSHRCRS-DSENILGFFWTDCPLCDFVV 140 (143)
Q Consensus 77 id~G~I~sIKFS~D~KiLAIQRs~~s-VEFvn~~~~~~~~q~cK~-k~~~IlGF~Wt~~~~cdivl 140 (143)
--+++|.+++||||+++||.-=.+.+ |.+++..++......-.. ....|.+..|-.+. .+++
T Consensus 193 ~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~--~~l~ 256 (355)
T 3vu4_A 193 AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDG--SKLA 256 (355)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTS--CEEE
T ss_pred ccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCC--CEEE
Confidence 36679999999999999999988998 999999988655443323 56789999998765 5443
No 70
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=95.09 E-value=0.48 Score=35.31 Aligned_cols=93 Identities=10% Similarity=0.060 Sum_probs=59.5
Q ss_pred CcceeEeCCCcEEEEEcC-CCeEEEEEccCC-CCCCCceecC-CCCceeEEEecC-CCcEEEEecCCCeEEEEEcCCC--
Q 043355 38 SRGLHYDDGTKLLISSTS-NQIFSWKTVPFN-PLATSTSDSI-PEGPILSIRFSL-DTKLIAIQRSSSEIQFWIRETS-- 111 (143)
Q Consensus 38 ~~~vFyDDank~v~avrs-ggv~gv~v~~~~-p~~~~~~fri-d~G~I~sIKFS~-D~KiLAIQRs~~sVEFvn~~~~-- 111 (143)
++.+-|+... +++... +.+.-|.+ .. .......... .+++|.+|.|+| |++++++--.+..|.++++.+.
T Consensus 153 v~~~~~~~~~--l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~ 228 (342)
T 1yfq_A 153 IFTMDTNSSR--LIVGMNNSQVQWFRL--PLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD 228 (342)
T ss_dssp EEEEEECSSE--EEEEESTTEEEEEES--SCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC
T ss_pred eEEEEecCCc--EEEEeCCCeEEEEEC--CccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCc
Confidence 5555565433 444444 44555555 32 2222222333 566999999999 9999999999999999998554
Q ss_pred -----ceEEEEecCC-------CCcEEEEEeccCC
Q 043355 112 -----EAFSHRCRSD-------SENILGFFWTDCP 134 (143)
Q Consensus 112 -----~~~~q~cK~k-------~~~IlGF~Wt~~~ 134 (143)
..+...+... ...|....|..+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 263 (342)
T 1yfq_A 229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH 263 (342)
T ss_dssp STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT
T ss_pred ccccccceeeecccccccccccceeEEEEEEcCCC
Confidence 3344444433 3379999998765
No 71
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=94.98 E-value=0.49 Score=35.46 Aligned_cols=69 Identities=4% Similarity=-0.009 Sum_probs=39.1
Q ss_pred ceeEeCCCcEEEEEc-CCCeEEEEEccCCCCC--CCceecCCCCceeEEEecCCCc-EEEEecCCCeEEEEEcCCCce
Q 043355 40 GLHYDDGTKLLISST-SNQIFSWKTVPFNPLA--TSTSDSIPEGPILSIRFSLDTK-LIAIQRSSSEIQFWIRETSEA 113 (143)
Q Consensus 40 ~vFyDDank~v~avr-sggv~gv~v~~~~p~~--~~~~frid~G~I~sIKFS~D~K-iLAIQRs~~sVEFvn~~~~~~ 113 (143)
+.+|+...+.+++.. .++.. .+ .+++. ....+.....++ ++.||||++ +++..+....|-.++.+++..
T Consensus 2 ~~~~~~~~~~~~v~~~~~~~v--~~--~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~ 74 (331)
T 3u4y_A 2 NAMFQTTSNFGIVVEQHLRRI--SF--FSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP 74 (331)
T ss_dssp -----CCCCEEEEEEGGGTEE--EE--EETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC
T ss_pred ceeEcCCCCEEEEEecCCCeE--EE--EeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce
Confidence 456776666666663 34422 22 22221 112223344566 999999998 556666688999999988754
No 72
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=94.92 E-value=0.34 Score=38.17 Aligned_cols=89 Identities=12% Similarity=0.248 Sum_probs=61.4
Q ss_pred CcceeEeCCCcEEEEE--cCCCeEEEEEccCCCCCCCceecCCCCceeEEEecCCC-cEEEEecCCCeEEEEEcCCCceE
Q 043355 38 SRGLHYDDGTKLLISS--TSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDT-KLIAIQRSSSEIQFWIRETSEAF 114 (143)
Q Consensus 38 ~~~vFyDDank~v~av--rsggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~-KiLAIQRs~~sVEFvn~~~~~~~ 114 (143)
++.+-|...++.+|+. ..+.+.=|.+ ..+ +....+....++|.+++||||+ ++||.-=.+.+|-+++.+++..+
T Consensus 229 v~~v~~sp~~~~~la~g~~d~~i~~wd~--~~~-~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~ 305 (357)
T 4g56_B 229 PTSVTWHPEKDDTFACGDETGNVSLVNI--KNP-DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF 305 (357)
T ss_dssp EEEEEECTTSTTEEEEEESSSCEEEEES--SCG-GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE
T ss_pred ccchhhhhcccceEEEeecccceeEEEC--CCC-cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe
Confidence 5566676555555554 3344555665 222 2334455577899999999997 68888777889999999888655
Q ss_pred EEEecCCCCcEEEEEec
Q 043355 115 SHRCRSDSENILGFFWT 131 (143)
Q Consensus 115 ~q~cK~k~~~IlGF~Wt 131 (143)
.. ...+..|.+.-|-
T Consensus 306 ~~--~~H~~~V~~vafs 320 (357)
T 4g56_B 306 RD--LSHRDFVTGVAWS 320 (357)
T ss_dssp EE--CCCSSCEEEEEEC
T ss_pred EE--CCCCCCEEEEEEe
Confidence 43 3456779999996
No 73
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=94.88 E-value=0.71 Score=35.55 Aligned_cols=96 Identities=9% Similarity=-0.009 Sum_probs=63.5
Q ss_pred CCCcceeEeCCC-cEEEEEcC-CCeEEEEEccCCCCCCCceecC--CCCceeEEEecC-CCcEEEEecCCCeEEEEEcCC
Q 043355 36 PESRGLHYDDGT-KLLISSTS-NQIFSWKTVPFNPLATSTSDSI--PEGPILSIRFSL-DTKLIAIQRSSSEIQFWIRET 110 (143)
Q Consensus 36 ~~~~~vFyDDan-k~v~avrs-ggv~gv~v~~~~p~~~~~~fri--d~G~I~sIKFS~-D~KiLAIQRs~~sVEFvn~~~ 110 (143)
..++.+-|+... +.+++-.. +.+.=|.+ .+ .+....+.. ..++|.+++||| |+++|+.--.+.+|.+++..+
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~--~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDY--DV-QNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG 150 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEET--TS-TTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeC--CC-cccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC
Confidence 456777777765 66666644 44555555 21 223334443 567999999999 779999999999999999986
Q ss_pred CceEEEEec-CCCCcEEEEEeccCC
Q 043355 111 SEAFSHRCR-SDSENILGFFWTDCP 134 (143)
Q Consensus 111 ~~~~~q~cK-~k~~~IlGF~Wt~~~ 134 (143)
......... .....|....|..+.
T Consensus 151 ~~~~~~~~~~~~~~~v~~~~~~~~~ 175 (383)
T 3ei3_B 151 SVIQVFAKTDSWDYWYCCVDVSVSR 175 (383)
T ss_dssp CEEEEEECCCCSSCCEEEEEEETTT
T ss_pred CceEEEeccCCCCCCeEEEEECCCC
Confidence 433222222 223568888887665
No 74
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=94.81 E-value=0.32 Score=36.45 Aligned_cols=98 Identities=12% Similarity=0.104 Sum_probs=59.9
Q ss_pred CcceeEeCCCcEEEEEc-C-CC-eEEEEEccCCCCCCCceecCC-CC-ceeEEEecCCCcEEEEecCCCeEEEEEcCCCc
Q 043355 38 SRGLHYDDGTKLLISST-S-NQ-IFSWKTVPFNPLATSTSDSIP-EG-PILSIRFSLDTKLIAIQRSSSEIQFWIRETSE 112 (143)
Q Consensus 38 ~~~vFyDDank~v~avr-s-gg-v~gv~v~~~~p~~~~~~frid-~G-~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~ 112 (143)
...+-|+...+.+++.. . ++ +.-|.. ........++ .| .+.++.||||++.|++--.+..|-.++..++.
T Consensus 143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~-----~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~ 217 (353)
T 3vgz_A 143 PRELVADDATNTVYISGIGKESVIWVVDG-----GNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNK 217 (353)
T ss_dssp EEEEEEETTTTEEEEEEESSSCEEEEEET-----TTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE
T ss_pred CceEEECCCCCEEEEEecCCCceEEEEcC-----CCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCe
Confidence 35577887777776664 2 33 333332 2222222233 44 58899999999988888778899999988874
Q ss_pred eEEEEec---CCCCcEEEEEeccCCCceEEEEe
Q 043355 113 AFSHRCR---SDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 113 ~~~q~cK---~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
.....-- .....+.+..|.... +.++++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~ 248 (353)
T 3vgz_A 218 ILSRKKLLDDGKEHFFINISLDTAR--QRAFIT 248 (353)
T ss_dssp EEEEEECCCSSSCCCEEEEEEETTT--TEEEEE
T ss_pred EEEEEEcCCCCCCcccceEEECCCC--CEEEEE
Confidence 4333221 123457777777666 555554
No 75
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=94.81 E-value=0.95 Score=34.25 Aligned_cols=88 Identities=11% Similarity=0.123 Sum_probs=56.8
Q ss_pred EEEEE-cCCCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCc-EEEEecCCCeEEEEEcCCCceEEEEe--------
Q 043355 49 LLISS-TSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTK-LIAIQRSSSEIQFWIRETSEAFSHRC-------- 118 (143)
Q Consensus 49 ~v~av-rsggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~K-iLAIQRs~~sVEFvn~~~~~~~~q~c-------- 118 (143)
.+++. ..+.+.-|.+ .. ......+.-.+++|.+++|+||++ +|+.--.+..|.+++..++......-
T Consensus 158 ~~~~~~~~~~v~~~d~--~~-~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 234 (408)
T 4a11_B 158 LVAVGTRGPKVQLCDL--KS-GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS 234 (408)
T ss_dssp EEEEEESSSSEEEEES--SS-SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSC
T ss_pred EEEEEcCCCeEEEEeC--CC-cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccc
Confidence 34443 3344555555 21 223344445678999999999998 79999999999999996653222221
Q ss_pred -------cCCCCcEEEEEeccCCCceEEEE
Q 043355 119 -------RSDSENILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 119 -------K~k~~~IlGF~Wt~~~~cdivlV 141 (143)
......|.+..|..+. +.++.
T Consensus 235 ~~~~~~~~~~~~~v~~~~~~~~~--~~l~~ 262 (408)
T 4a11_B 235 QAVESANTAHNGKVNGLCFTSDG--LHLLT 262 (408)
T ss_dssp CCTTTSSCSCSSCEEEEEECTTS--SEEEE
T ss_pred eeeccccccccCceeEEEEcCCC--CEEEE
Confidence 3445679999998765 55443
No 76
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=94.69 E-value=0.64 Score=36.89 Aligned_cols=92 Identities=12% Similarity=0.139 Sum_probs=61.2
Q ss_pred CcceeEeCCCcEEEEE-cCCC-eEEEEEccCCCCCCCceecCCCCceeEEEecCCC-cEEEEecCCCeEEEEEcCCCceE
Q 043355 38 SRGLHYDDGTKLLISS-TSNQ-IFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDT-KLIAIQRSSSEIQFWIRETSEAF 114 (143)
Q Consensus 38 ~~~vFyDDank~v~av-rsgg-v~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~-KiLAIQRs~~sVEFvn~~~~~~~ 114 (143)
++.+-|...++++++. ..+| +.=|.+.. .+....+.--.++|.+++||||+ ++||.-=.+.+|-+++..++..+
T Consensus 217 ~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~---~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~ 293 (344)
T 4gqb_B 217 PTSLAWHPQQSEVFVFGDENGTVSLVDTKS---TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF 293 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEESCC-----CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE
T ss_pred ceeeeecCCCCcceEEeccCCcEEEEECCC---CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE
Confidence 4556666555555554 3344 33354421 22334455567799999999998 68988878899999999888654
Q ss_pred EEEecCCCCcEEEEEeccCC
Q 043355 115 SHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 115 ~q~cK~k~~~IlGF~Wt~~~ 134 (143)
. .+.....|.+.-|.-..
T Consensus 294 ~--~~~H~~~V~~v~~sp~~ 311 (344)
T 4gqb_B 294 R--SQAHRDFVRDATWSPLN 311 (344)
T ss_dssp E--ECCCSSCEEEEEECSSS
T ss_pred E--EcCCCCCEEEEEEeCCC
Confidence 3 35566779999997443
No 77
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=94.67 E-value=0.16 Score=39.68 Aligned_cols=57 Identities=16% Similarity=0.246 Sum_probs=44.7
Q ss_pred CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCce----------EEEEecCCC------------CcEEEEEeccCC
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEA----------FSHRCRSDS------------ENILGFFWTDCP 134 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~----------~~q~cK~k~------------~~IlGF~Wt~~~ 134 (143)
+.++|.+++||||+++||.--.+..|-+++.+++.. .....+... ..|....|....
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 467999999999999999999999999999976642 344555555 669999998763
No 78
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=94.65 E-value=1.3 Score=35.03 Aligned_cols=53 Identities=21% Similarity=0.257 Sum_probs=44.2
Q ss_pred ceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEEEecCCCCcEEEEEeccCC
Q 043355 81 PILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 81 ~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
.|.++.||||+++||.--.+..|.+++.+++. ..+..+.....|....|....
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~p~~ 177 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSG 177 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTS
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-EEEEEccCCCCEEEEEEcCCC
Confidence 59999999999999999999999999998774 334456667789999998665
No 79
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=94.64 E-value=0.57 Score=36.51 Aligned_cols=101 Identities=9% Similarity=0.019 Sum_probs=65.3
Q ss_pred CcceeEeCCCcEEEEEcC-C-CeEEEEEccCCCCC--CCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCce
Q 043355 38 SRGLHYDDGTKLLISSTS-N-QIFSWKTVPFNPLA--TSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEA 113 (143)
Q Consensus 38 ~~~vFyDDank~v~avrs-g-gv~gv~v~~~~p~~--~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~ 113 (143)
...+-|+. ++.+++..+ + .+.-|.+....... +.-.+.-..++|.+++|++|+++++.-..+..|..++..++..
T Consensus 125 ~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~ 203 (433)
T 3bws_A 125 PKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAY 203 (433)
T ss_dssp BCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCE
T ss_pred ceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceE
Confidence 44677888 666666643 3 36556552111100 0001112456899999999999999999999999999987644
Q ss_pred EEEEecCCCCcEEEEEeccCCCceEEEEe
Q 043355 114 FSHRCRSDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 114 ~~q~cK~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
. ...+.....+.+..|.... +.++++
T Consensus 204 ~-~~~~~~~~~~~~~~~~~~~--~~l~~~ 229 (433)
T 3bws_A 204 K-ATVDLTGKWSKILLYDPIR--DLVYCS 229 (433)
T ss_dssp E-EEEECSSSSEEEEEEETTT--TEEEEE
T ss_pred E-EEEcCCCCCeeEEEEcCCC--CEEEEE
Confidence 3 2333455678888888776 666554
No 80
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=94.62 E-value=1.1 Score=34.36 Aligned_cols=97 Identities=6% Similarity=0.100 Sum_probs=63.6
Q ss_pred CCcceeEeCCCcEEEEEcCCCeE-EEEEccCCCCCCCceecCCCCceeEEEecCCCc-EEEEecCCCeEEEEEcCCC---
Q 043355 37 ESRGLHYDDGTKLLISSTSNQIF-SWKTVPFNPLATSTSDSIPEGPILSIRFSLDTK-LIAIQRSSSEIQFWIRETS--- 111 (143)
Q Consensus 37 ~~~~vFyDDank~v~avrsggv~-gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~K-iLAIQRs~~sVEFvn~~~~--- 111 (143)
.++.+-|....+.+++...+|.. -|.+ ..++...+.-.+++|.+++|+||++ +|+.--.+..|.+++..++
T Consensus 165 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~----~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 240 (383)
T 3ei3_B 165 WYCCVDVSVSRQMLATGDSTGRLLLLGL----DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK 240 (383)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEEET----TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST
T ss_pred CeEEEEECCCCCEEEEECCCCCEEEEEC----CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc
Confidence 35566666666666665444433 3333 1222333444678999999999999 9999999999999999662
Q ss_pred ceEEEEecCCCCcEEEEEecc-CCCceEEE
Q 043355 112 EAFSHRCRSDSENILGFFWTD-CPLCDFVV 140 (143)
Q Consensus 112 ~~~~q~cK~k~~~IlGF~Wt~-~~~cdivl 140 (143)
....... .....|.+..|.. +. +.++
T Consensus 241 ~~~~~~~-~~~~~v~~~~~s~~~~--~~l~ 267 (383)
T 3ei3_B 241 NSYIAEM-PHEKPVNAAYFNPTDS--TKLL 267 (383)
T ss_dssp TCEEEEE-ECSSCEEEEEECTTTS--CEEE
T ss_pred cceEEEe-cCCCceEEEEEcCCCC--CEEE
Confidence 2222222 3567899999987 54 4444
No 81
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=94.58 E-value=0.84 Score=35.01 Aligned_cols=96 Identities=13% Similarity=0.097 Sum_probs=59.9
Q ss_pred CcceeEeCCCcEEEEEc--CCCeEEEEEccCCCCCCCceecC-CCCceeEEEecCCCcEEEE-ecCCCeEEEEEcCCCce
Q 043355 38 SRGLHYDDGTKLLISST--SNQIFSWKTVPFNPLATSTSDSI-PEGPILSIRFSLDTKLIAI-QRSSSEIQFWIRETSEA 113 (143)
Q Consensus 38 ~~~vFyDDank~v~avr--sggv~gv~v~~~~p~~~~~~fri-d~G~I~sIKFS~D~KiLAI-QRs~~sVEFvn~~~~~~ 113 (143)
+..+-|+...+.|++.. .+.+.-|.. ........+ -.++|.++.||||++.|++ ...+..|..++..++..
T Consensus 34 ~~~~~~s~dg~~l~~~~~~d~~i~v~d~-----~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~ 108 (391)
T 1l0q_A 34 PMGAVISPDGTKVYVANAHSNDVSIIDT-----ATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV 108 (391)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEET-----TTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred cceEEECCCCCEEEEECCCCCeEEEEEC-----CCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeE
Confidence 56677887777776553 333333333 111122223 3349999999999997755 44568999999988754
Q ss_pred EEEEecCCCCcEEEEEeccCCCceEEEEe
Q 043355 114 FSHRCRSDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 114 ~~q~cK~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
.... + ....+.++.|.... +.++++
T Consensus 109 ~~~~-~-~~~~~~~~~~s~dg--~~l~~~ 133 (391)
T 1l0q_A 109 AGTV-K-TGKSPLGLALSPDG--KKLYVT 133 (391)
T ss_dssp EEEE-E-CSSSEEEEEECTTS--SEEEEE
T ss_pred EEEE-e-CCCCcceEEECCCC--CEEEEE
Confidence 3322 2 23457888888776 655544
No 82
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=94.50 E-value=0.65 Score=39.69 Aligned_cols=103 Identities=11% Similarity=0.114 Sum_probs=67.7
Q ss_pred ceecCCCCcceeEeCCCcE-EEEEcC-CCeEEEEEccCCCCCCCc--eecCCCCceeEEEecCCCcEEEEecCCCeEEEE
Q 043355 31 LRCSIPESRGLHYDDGTKL-LISSTS-NQIFSWKTVPFNPLATST--SDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFW 106 (143)
Q Consensus 31 lR~~~~~~~~vFyDDank~-v~avrs-ggv~gv~v~~~~p~~~~~--~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFv 106 (143)
|+-+-..++.+-|...+.. |++--. +.+.=|.+.......... .+.--.+.|.++.||||+++|+.-=.+.+|-++
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vw 457 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 4556666888888765544 444433 445556663221111111 122256799999999999999999999999999
Q ss_pred EcCCCceEEEEecCCCCcEEEEEeccCC
Q 043355 107 IRETSEAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 107 n~~~~~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
+..++... +..+.....|.+..|....
T Consensus 458 d~~~~~~~-~~~~~h~~~v~~~~~s~~~ 484 (694)
T 3dm0_A 458 DLAAGVST-RRFVGHTKDVLSVAFSLDN 484 (694)
T ss_dssp ETTTTEEE-EEEECCSSCEEEEEECTTS
T ss_pred ECCCCcce-eEEeCCCCCEEEEEEeCCC
Confidence 99887432 3445566778888887654
No 83
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=94.47 E-value=1.2 Score=33.87 Aligned_cols=105 Identities=10% Similarity=0.083 Sum_probs=58.8
Q ss_pred CCCcceeEeCCCcEEEEEc-C-CCeEEEEEccCCCCCCCceecC-CCC--------ceeEEEecCCCcEEEEecCCCeEE
Q 043355 36 PESRGLHYDDGTKLLISST-S-NQIFSWKTVPFNPLATSTSDSI-PEG--------PILSIRFSLDTKLIAIQRSSSEIQ 104 (143)
Q Consensus 36 ~~~~~vFyDDank~v~avr-s-ggv~gv~v~~~~p~~~~~~fri-d~G--------~I~sIKFS~D~KiLAIQRs~~sVE 104 (143)
.....+-|+...+.|++.. . +.+.-|.+...+.......+.. ..| .+.++.||||+++++.-+.+..|.
T Consensus 86 ~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~ 165 (347)
T 3hfq_A 86 TPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVY 165 (347)
T ss_dssp CCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEE
Confidence 3456677777767666653 3 3344555522111111111111 222 488999999999888888889999
Q ss_pred EEEcC-CCce-EEEEec-CCCCcEEEEEeccCCCceEEEEe
Q 043355 105 FWIRE-TSEA-FSHRCR-SDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 105 Fvn~~-~~~~-~~q~cK-~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
.++.. ++.. ...... .......+..|..+. +.++++
T Consensus 166 ~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg--~~l~v~ 204 (347)
T 3hfq_A 166 VYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDG--QYAFLA 204 (347)
T ss_dssp EEEECTTSCEEEEEEEECCTTCCEEEEEECTTS--SEEEEE
T ss_pred EEEECCCCcEEEeeeEEcCCCCCCceEEECCCC--CEEEEE
Confidence 99987 4421 111111 122345666776665 555554
No 84
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=94.41 E-value=0.74 Score=37.31 Aligned_cols=61 Identities=13% Similarity=0.017 Sum_probs=40.9
Q ss_pred CCCceeEEEecCCCcEEEEecC---CCeEEEEEcCCCceEEEEecCCCCcEEEEEeccCCCceEEEE
Q 043355 78 PEGPILSIRFSLDTKLIAIQRS---SSEIQFWIRETSEAFSHRCRSDSENILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs---~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~~cdivlV 141 (143)
.++.+.+++||||++.||+-.+ ...|-.++..++.. +........+....|.... -.+++.
T Consensus 221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~spdg-~~l~~~ 284 (415)
T 2hqs_A 221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDS-QNLAFT 284 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EECCCCSSCEEEEEECTTS-SEEEEE
T ss_pred CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE--EeCcCCCCcccceEECCCC-CEEEEE
Confidence 5678999999999998885443 34577788877754 2223344668888887554 134444
No 85
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=94.38 E-value=0.56 Score=34.70 Aligned_cols=101 Identities=7% Similarity=0.008 Sum_probs=60.1
Q ss_pred CCcceeEeCCCcEEEEEcC--CCeEEEEEccCCCCCCCcee-cC-CCCceeEEEecCCCcEEE-EecCCCeEEEEEcCCC
Q 043355 37 ESRGLHYDDGTKLLISSTS--NQIFSWKTVPFNPLATSTSD-SI-PEGPILSIRFSLDTKLIA-IQRSSSEIQFWIRETS 111 (143)
Q Consensus 37 ~~~~vFyDDank~v~avrs--ggv~gv~v~~~~p~~~~~~f-ri-d~G~I~sIKFS~D~KiLA-IQRs~~sVEFvn~~~~ 111 (143)
....+-|+...+.|++... +.+.-|.+.+. ....... .+ ..+.+.++.||||++.|+ ....+..|..++..++
T Consensus 39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~ 116 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD--DGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG 116 (343)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEEECTT--TCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred CCceEEECCCCCEEEEeecCCCeEEEEEecCC--CCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCC
Confidence 4666778877777777755 45555666211 1111111 22 344788999999999665 4556788999888544
Q ss_pred c--eEEEEecCCCCcEEEEEeccCCCceEEEEe
Q 043355 112 E--AFSHRCRSDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 112 ~--~~~q~cK~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
. ...+... ....+.+..|.... +.++++
T Consensus 117 ~~~~~~~~~~-~~~~~~~~~~s~dg--~~l~~~ 146 (343)
T 1ri6_A 117 LPVGVVDVVE-GLDGCHSANISPDN--RTLWVP 146 (343)
T ss_dssp EEEEEEEEEC-CCTTBCCCEECTTS--SEEEEE
T ss_pred cccccccccc-CCCCceEEEECCCC--CEEEEe
Confidence 2 2222333 23447777777665 555554
No 86
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=94.38 E-value=0.22 Score=37.77 Aligned_cols=55 Identities=13% Similarity=0.113 Sum_probs=45.1
Q ss_pred CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCC-ceEEEEecCCCCcEEEEEecc
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETS-EAFSHRCRSDSENILGFFWTD 132 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~-~~~~q~cK~k~~~IlGF~Wt~ 132 (143)
-+++|.+++||||+++||.--.+.+|.+++.+++ ....+..+.....|.+..|..
T Consensus 8 h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~ 63 (297)
T 2pm7_B 8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63 (297)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECC
T ss_pred CcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecC
Confidence 4679999999999999999999999999999754 344455566678899999964
No 87
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=94.33 E-value=0.84 Score=36.98 Aligned_cols=55 Identities=13% Similarity=-0.002 Sum_probs=42.0
Q ss_pred CCCceeEEEecCCCcEEEEecCC---CeEEEEEcCCCceEEEEecCCCCcEEEEEeccCC
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSS---SEIQFWIRETSEAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~---~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
..++|.+++||||++.||.-... ..|-.++..++.... .......+....|....
T Consensus 177 ~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~--l~~~~~~~~~~~~spdg 234 (415)
T 2hqs_A 177 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--VASFPRHNGAPAFSPDG 234 (415)
T ss_dssp ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE--EECCSSCEEEEEECTTS
T ss_pred CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE--eecCCCcccCEEEcCCC
Confidence 56799999999999999988765 499999998886532 22334568888887654
No 88
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=94.28 E-value=0.63 Score=36.83 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=40.0
Q ss_pred CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEE-EEecCCCCcEEEEEeccCC
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFS-HRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~-q~cK~k~~~IlGF~Wt~~~ 134 (143)
.+++|.++.||||+++||.-- ...+..++..++.... .....++..|...-|..+.
T Consensus 175 ~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg 231 (365)
T 4h5i_A 175 TRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADD 231 (365)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETT
T ss_pred CCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCC
Confidence 567999999999999999885 5567777877764433 3334445667777776555
No 89
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=94.21 E-value=0.42 Score=40.08 Aligned_cols=63 Identities=13% Similarity=0.057 Sum_probs=45.0
Q ss_pred CCceeEEEecCCCcEEEEecCC--------CeEEEEEcC-CC--ceEEEEecCCCCcEEEEEeccCCCceEEEEeC
Q 043355 79 EGPILSIRFSLDTKLIAIQRSS--------SEIQFWIRE-TS--EAFSHRCRSDSENILGFFWTDCPLCDFVVVKN 143 (143)
Q Consensus 79 ~G~I~sIKFS~D~KiLAIQRs~--------~sVEFvn~~-~~--~~~~q~cK~k~~~IlGF~Wt~~~~cdivlVTn 143 (143)
.+.+.++.||||+|.||..... .+|-.++.+ ++ .+..+........+....|.... ++++++|
T Consensus 187 ~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg--~l~~~~~ 260 (662)
T 3azo_A 187 HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDG--SLIVATD 260 (662)
T ss_dssp SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTS--CEEEEEC
T ss_pred CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCC--eEEEEEC
Confidence 4578899999999999976643 478888887 56 24444444445678889998777 6777654
No 90
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=94.13 E-value=0.17 Score=38.93 Aligned_cols=55 Identities=11% Similarity=0.144 Sum_probs=45.6
Q ss_pred CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCc-eEEEEecCCCCcEEEEEecc
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSE-AFSHRCRSDSENILGFFWTD 132 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~-~~~q~cK~k~~~IlGF~Wt~ 132 (143)
-+++|.+++||||+++||.-=.+.+|-+++..++. ...+..+.....|....|..
T Consensus 12 H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~ 67 (316)
T 3bg1_A 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAH 67 (316)
T ss_dssp --CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECC
T ss_pred ccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCC
Confidence 45699999999999999999999999999998774 45566777788899999964
No 91
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.12 E-value=0.64 Score=42.03 Aligned_cols=94 Identities=13% Similarity=0.176 Sum_probs=69.7
Q ss_pred CCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecC-CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEE
Q 043355 37 ESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSI-PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFS 115 (143)
Q Consensus 37 ~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~fri-d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~ 115 (143)
.++.+-|....+.+++...+.+.-|.+ .. ......+.. ..++|.++.||||++++++--.+..|.+++..++.. .
T Consensus 800 ~v~~~~~s~dg~~l~~~~~~~v~~~d~--~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~-~ 875 (1249)
T 3sfz_A 800 IVKCCSWSADGDKIIVAAKNKVLLFDI--HT-SGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK-V 875 (1249)
T ss_dssp CBCCCCBCTTSSEEEEEETTEEEEEET--TT-CCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEE-E
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEe--cC-CCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce-e
Confidence 355666777777777777777666666 21 122233333 567999999999999999999999999999988743 4
Q ss_pred EEecCCCCcEEEEEeccCC
Q 043355 116 HRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 116 q~cK~k~~~IlGF~Wt~~~ 134 (143)
..++.....|.+..|..+.
T Consensus 876 ~~~~~h~~~v~~v~~spdg 894 (1249)
T 3sfz_A 876 ADCRGHLSWVHGVMFSPDG 894 (1249)
T ss_dssp EEECCCSSCEEEEEECTTS
T ss_pred eecCCCccceEEEEECCCC
Confidence 5566777889999998765
No 92
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=94.08 E-value=0.88 Score=35.68 Aligned_cols=83 Identities=13% Similarity=0.107 Sum_probs=54.7
Q ss_pred CcEEEEEcCCC-eEEEEEccCCCCCCCceecC--CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEEEecCCCC
Q 043355 47 TKLLISSTSNQ-IFSWKTVPFNPLATSTSDSI--PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSE 123 (143)
Q Consensus 47 nk~v~avrsgg-v~gv~v~~~~p~~~~~~fri--d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~ 123 (143)
.+.+++...+| +.-|.+ . ..+....+.. ..++|.++.||||+++||.--.+..|.+++..++............
T Consensus 182 ~~~l~~~~~d~~i~iwd~--~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 258 (437)
T 3gre_A 182 KSLLVALTNLSRVIIFDI--R-TLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHA 258 (437)
T ss_dssp CEEEEEEETTSEEEEEET--T-TCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCE
T ss_pred CCEEEEEeCCCeEEEEeC--C-CCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCC
Confidence 44444444444 444544 2 1222233443 4679999999999999999999999999999886544333224556
Q ss_pred cEEEEEecc
Q 043355 124 NILGFFWTD 132 (143)
Q Consensus 124 ~IlGF~Wt~ 132 (143)
.|....|..
T Consensus 259 ~v~~~~~~~ 267 (437)
T 3gre_A 259 PITHVEVCQ 267 (437)
T ss_dssp EEEEEEECT
T ss_pred ceEEEEecc
Confidence 788887764
No 93
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=93.92 E-value=0.62 Score=40.94 Aligned_cols=98 Identities=13% Similarity=0.128 Sum_probs=68.7
Q ss_pred CCCCcceeEeCCCcEEEEEcCCC-eEEEEEccCCCCCCCceecCCCCceeEEEecCC--CcEEEEecCCCeEEEEEcCCC
Q 043355 35 IPESRGLHYDDGTKLLISSTSNQ-IFSWKTVPFNPLATSTSDSIPEGPILSIRFSLD--TKLIAIQRSSSEIQFWIRETS 111 (143)
Q Consensus 35 ~~~~~~vFyDDank~v~avrsgg-v~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D--~KiLAIQRs~~sVEFvn~~~~ 111 (143)
...++.+-|+...+.|++...+| +.=|.+... .......+.-.+++|.+++||+| +++|+.--.+.+|-+++..++
T Consensus 9 ~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~-~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~ 87 (753)
T 3jro_A 9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG 87 (753)
T ss_dssp CCCEEEECCCSSSCCEEEEETTTEEEEEEEETT-EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT
T ss_pred cceeEEEEECCCCCeEEEEECCCcEEEEecCCC-CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC
Confidence 34566677776666666665554 555666211 11122333346779999999999 999999999999999999887
Q ss_pred c-eEEEEecCCCCcEEEEEeccC
Q 043355 112 E-AFSHRCRSDSENILGFFWTDC 133 (143)
Q Consensus 112 ~-~~~q~cK~k~~~IlGF~Wt~~ 133 (143)
. ...+........|.+..|...
T Consensus 88 ~~~~~~~~~~h~~~V~~v~~sp~ 110 (753)
T 3jro_A 88 RWSQIAVHAVHSASVNSVQWAPH 110 (753)
T ss_dssp EEEEEEEECCCSSCEEEEEECCG
T ss_pred cccccccccCCCCCeEEEEECCC
Confidence 4 345555666788999999765
No 94
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=93.86 E-value=1.7 Score=33.42 Aligned_cols=98 Identities=13% Similarity=0.203 Sum_probs=61.2
Q ss_pred CCcceeEeCCCcEEEEEcCCC-eEEEEEccCCCC--C--CCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcC-C
Q 043355 37 ESRGLHYDDGTKLLISSTSNQ-IFSWKTVPFNPL--A--TSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRE-T 110 (143)
Q Consensus 37 ~~~~vFyDDank~v~avrsgg-v~gv~v~~~~p~--~--~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~-~ 110 (143)
.++.+=|....+.|.+.-.++ +.=|.+...... . ....+.--+++|.++.||||+++||.-=.+.+|-+++.. .
T Consensus 60 ~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~ 139 (330)
T 2hes_X 60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDES 139 (330)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTT
T ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCC
Confidence 466777777666666664444 444554211010 0 111222256699999999999999999999999999994 3
Q ss_pred Cc--eEEEEecCCCCcEEEEEeccCC
Q 043355 111 SE--AFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 111 ~~--~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
+. +..+..+.....|....|-...
T Consensus 140 ~~~~~~~~~~~~h~~~v~~v~~~p~~ 165 (330)
T 2hes_X 140 GEEYECISVLQEHSQDVKHVIWHPSE 165 (330)
T ss_dssp CCCCEEEEEECCCSSCEEEEEECSSS
T ss_pred CCCeEEEEEeccCCCceEEEEECCCC
Confidence 33 3445556667789999997665
No 95
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=93.84 E-value=1.3 Score=34.02 Aligned_cols=97 Identities=12% Similarity=0.107 Sum_probs=58.9
Q ss_pred CCcceeEeCCCcEEEEEcC--CCeEEEEEccCCCCCCCceecC-CCCceeEEEecCCCcEE-EEecCCCeEEEEEcCCCc
Q 043355 37 ESRGLHYDDGTKLLISSTS--NQIFSWKTVPFNPLATSTSDSI-PEGPILSIRFSLDTKLI-AIQRSSSEIQFWIRETSE 112 (143)
Q Consensus 37 ~~~~vFyDDank~v~avrs--ggv~gv~v~~~~p~~~~~~fri-d~G~I~sIKFS~D~KiL-AIQRs~~sVEFvn~~~~~ 112 (143)
.++.+-|+...+.|++..+ +.+.-|.+ ........+ ..+.+.++.||||++.| +.-..+..|.+++..++.
T Consensus 75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~-----~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 149 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNMASSTLSVIDT-----TSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA 149 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEET-----TTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred CccceEECCCCCEEEEEECCCCEEEEEEC-----CCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 4566777776666665533 33333333 111112222 34478999999999977 566668899999998774
Q ss_pred eEEEEecCCCCcEEEEEeccCCCceEEEEe
Q 043355 113 AFSHRCRSDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 113 ~~~q~cK~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
.. ...+.. ..+.+..|.... +.++++
T Consensus 150 ~~-~~~~~~-~~~~~~~~~~dg--~~l~~~ 175 (391)
T 1l0q_A 150 VI-NTVSVG-RSPKGIAVTPDG--TKVYVA 175 (391)
T ss_dssp EE-EEEECC-SSEEEEEECTTS--SEEEEE
T ss_pred EE-EEEecC-CCcceEEECCCC--CEEEEE
Confidence 33 233322 446788887666 566554
No 96
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=93.81 E-value=0.64 Score=38.38 Aligned_cols=100 Identities=11% Similarity=0.174 Sum_probs=64.2
Q ss_pred CCCCcceeEeCC-CcEEEEEcC-CCeEEEEEccCCCCCCCceec-C-CCCceeEEEecCCCcEEEEecCCCeEEEEEcCC
Q 043355 35 IPESRGLHYDDG-TKLLISSTS-NQIFSWKTVPFNPLATSTSDS-I-PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRET 110 (143)
Q Consensus 35 ~~~~~~vFyDDa-nk~v~avrs-ggv~gv~v~~~~p~~~~~~fr-i-d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~ 110 (143)
...++.+-|... ...+.+... |-+.=|.+... . .... . .+++|.++.||||+++||+--.+..|-+++...
T Consensus 149 ~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~----~-~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~ 223 (434)
T 2oit_A 149 GGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET----V-KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL 223 (434)
T ss_dssp GGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS----E-EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTC
T ss_pred CCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC----c-ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCC
Confidence 344777888766 444554544 44555666221 1 1112 2 345899999999999999999999999998872
Q ss_pred CceEEEEecCC-----CCcEEEEEeccCCCceEEEE
Q 043355 111 SEAFSHRCRSD-----SENILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 111 ~~~~~q~cK~k-----~~~IlGF~Wt~~~~cdivlV 141 (143)
.......+... ...+.++.|..+. .++++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~v~~v~w~~~~--~~l~~ 257 (434)
T 2oit_A 224 QEKKVIPCPPFYESDHPVRVLDVLWIGTY--VFAIV 257 (434)
T ss_dssp CEEEEECCCTTCCTTSCEEEEEEEEEETT--EEEEE
T ss_pred cccccccCCcccCCCCceeEEEEEEecCc--eEEEE
Confidence 22222334322 1279999999877 66643
No 97
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=93.80 E-value=1.4 Score=34.70 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=33.8
Q ss_pred ecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCce
Q 043355 75 DSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEA 113 (143)
Q Consensus 75 frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~ 113 (143)
+.--+++|.+++||||++.||.-=.+.+|-+++..++..
T Consensus 245 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~ 283 (380)
T 3iz6_a 245 YHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ 283 (380)
T ss_dssp ECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEE
T ss_pred ECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcE
Confidence 333677999999999999999999999999999988744
No 98
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=93.76 E-value=1.5 Score=32.39 Aligned_cols=104 Identities=11% Similarity=0.112 Sum_probs=60.6
Q ss_pred CCcceeEeCCCcEEEEEc--CCCeEEEEEccCCCCCCCc--eecCCCC-ceeEEEecCCCcEE-EEecCCCeEEEEEcCC
Q 043355 37 ESRGLHYDDGTKLLISST--SNQIFSWKTVPFNPLATST--SDSIPEG-PILSIRFSLDTKLI-AIQRSSSEIQFWIRET 110 (143)
Q Consensus 37 ~~~~vFyDDank~v~avr--sggv~gv~v~~~~p~~~~~--~frid~G-~I~sIKFS~D~KiL-AIQRs~~sVEFvn~~~ 110 (143)
....+-|+...+.|++.. .+.+.-|.+...+...... .+....| .+.++.||||++.| +....+..|..++...
T Consensus 130 ~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~ 209 (343)
T 1ri6_A 130 GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD 209 (343)
T ss_dssp TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred CceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 366677887777777663 3555555662111111111 3344455 78899999999955 4555788999999843
Q ss_pred --Cc-eEEEEec------CCCCcEEEEEeccCCCceEEEEe
Q 043355 111 --SE-AFSHRCR------SDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 111 --~~-~~~q~cK------~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
+. +..+... .....+.++.|.... +.++++
T Consensus 210 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg--~~l~v~ 248 (343)
T 1ri6_A 210 PHGNIECVQTLDMMPENFSDTRWAADIHITPDG--RHLYAC 248 (343)
T ss_dssp TTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS--SEEEEE
T ss_pred CCCcEEEEeeccccCccccccCCccceEECCCC--CEEEEE
Confidence 42 2222222 112346677887666 666654
No 99
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=93.72 E-value=1.3 Score=34.36 Aligned_cols=96 Identities=13% Similarity=0.066 Sum_probs=57.5
Q ss_pred CcceeEeCCCcEEEEE-cCCC-eEEEEEccCCCCCCCceecC-CCCceeEEEecCCCcEEEEecCC--------------
Q 043355 38 SRGLHYDDGTKLLISS-TSNQ-IFSWKTVPFNPLATSTSDSI-PEGPILSIRFSLDTKLIAIQRSS-------------- 100 (143)
Q Consensus 38 ~~~vFyDDank~v~av-rsgg-v~gv~v~~~~p~~~~~~fri-d~G~I~sIKFS~D~KiLAIQRs~-------------- 100 (143)
...+-|+...+.+++. ..++ +.-|.. ......-.+ ..+.+.++.||||++.|++--..
T Consensus 305 ~~~~~~~~~g~~l~~~~~~~~~v~v~d~-----~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~ 379 (433)
T 3bws_A 305 KRHIVSGNTENKIYVSDMCCSKIEVYDL-----KEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLV 379 (433)
T ss_dssp EEEEEECSSTTEEEEEETTTTEEEEEET-----TTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSS
T ss_pred cceEEECCCCCEEEEEecCCCEEEEEEC-----CCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCcccccccccccc
Confidence 4456666666556555 3333 333333 111112223 34578999999999977775543
Q ss_pred -CeEEEEEcCCCceEEEEecCCCCcEEEEEeccCCCceEEEEe
Q 043355 101 -SEIQFWIRETSEAFSHRCRSDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 101 -~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
..|-.++..++.... ..+. ...+.++.|.... +.++++
T Consensus 380 dg~v~~~d~~~~~~~~-~~~~-~~~~~~~~~s~dg--~~l~~~ 418 (433)
T 3bws_A 380 LGKVYVIDTTTDTVKE-FWEA-GNQPTGLDVSPDN--RYLVIS 418 (433)
T ss_dssp CCEEEEEETTTTEEEE-EEEC-SSSEEEEEECTTS--CEEEEE
T ss_pred ceEEEEEECCCCcEEE-EecC-CCCCceEEEcCCC--CEEEEE
Confidence 389999998874332 2232 4568899998776 666654
No 100
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=93.71 E-value=1.3 Score=33.92 Aligned_cols=72 Identities=11% Similarity=0.111 Sum_probs=49.6
Q ss_pred CCcceeEeCCCcEEEEEc-CCCeEEEEEccCCCCCCCceecC-CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCC
Q 043355 37 ESRGLHYDDGTKLLISST-SNQIFSWKTVPFNPLATSTSDSI-PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETS 111 (143)
Q Consensus 37 ~~~~vFyDDank~v~avr-sggv~gv~v~~~~p~~~~~~fri-d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~ 111 (143)
.++.+-|....+.+.+-. .|.+.=|.+ ......+..+.. ..++|.+++||||+++||.--.+ +|-+++..++
T Consensus 172 ~i~~~~~~pdg~~lasg~~dg~i~iwd~--~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~ 245 (343)
T 3lrv_A 172 EYSSGVLHKDSLLLALYSPDGILDVYNL--SSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ-TVVCFDLRKD 245 (343)
T ss_dssp CCCEEEECTTSCEEEEECTTSCEEEEES--SCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS-BEEEEETTSS
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEEC--CCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-eEEEEEcCCC
Confidence 366777776555544433 355555666 322322356666 67899999999999999998855 9999998665
No 101
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=93.60 E-value=1.9 Score=33.14 Aligned_cols=98 Identities=8% Similarity=0.136 Sum_probs=63.4
Q ss_pred CCCcceeEeCCCcEEEEEcC-CCeEEEEEccCCCC-CCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCC-c
Q 043355 36 PESRGLHYDDGTKLLISSTS-NQIFSWKTVPFNPL-ATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETS-E 112 (143)
Q Consensus 36 ~~~~~vFyDDank~v~avrs-ggv~gv~v~~~~p~-~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~-~ 112 (143)
..++.+=|....+.|++.-. +-+.=|.+...+.. +....+.--.++|.++.||||+++||.-=.+.+|-+++..++ .
T Consensus 108 ~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~ 187 (330)
T 2hes_X 108 NEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW 187 (330)
T ss_dssp -CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe
Confidence 34666777665555655533 34444555111111 111122335569999999999999999999999999988665 2
Q ss_pred eEEEEecCCCCcEEEEEeccC
Q 043355 113 AFSHRCRSDSENILGFFWTDC 133 (143)
Q Consensus 113 ~~~q~cK~k~~~IlGF~Wt~~ 133 (143)
+..+..+.....|.+.-|...
T Consensus 188 ~~~~~~~~h~~~v~~~~~~~~ 208 (330)
T 2hes_X 188 ECVAVLNGHEGTVWSSDFDKT 208 (330)
T ss_dssp EEEEEECCCSSCEEEEEECCS
T ss_pred eEEEEccCCCCcEEEEEecCC
Confidence 455566666778888888665
No 102
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=93.59 E-value=1.8 Score=32.83 Aligned_cols=102 Identities=12% Similarity=0.099 Sum_probs=57.1
Q ss_pred CcceeEeCCCcEEEEEc-CC-CeEEEEEccCCCCCCCceecCCCC-ceeEEEecCCCcEEEE-ecCCCeEEEEEcCC--C
Q 043355 38 SRGLHYDDGTKLLISST-SN-QIFSWKTVPFNPLATSTSDSIPEG-PILSIRFSLDTKLIAI-QRSSSEIQFWIRET--S 111 (143)
Q Consensus 38 ~~~vFyDDank~v~avr-sg-gv~gv~v~~~~p~~~~~~frid~G-~I~sIKFS~D~KiLAI-QRs~~sVEFvn~~~--~ 111 (143)
...+-|+...+ +++.. .+ .+.-|.+...+.-.....+....| .+..+.||||++.|.+ ......|..+.... +
T Consensus 143 ~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g 221 (347)
T 3hfq_A 143 IHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG 221 (347)
T ss_dssp EEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred ceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence 34466776555 55553 23 355566631111111122344455 6779999999995555 67788899888853 4
Q ss_pred c-eEEEEecCCC------CcEEEEEeccCCCceEEEEe
Q 043355 112 E-AFSHRCRSDS------ENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 112 ~-~~~q~cK~k~------~~IlGF~Wt~~~~cdivlVT 142 (143)
. +..+...... ..+.+..|.... +.++|+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~i~~spdG--~~l~v~ 257 (347)
T 3hfq_A 222 AFTQLGIVKTIPADYTAHNGAAAIRLSHDG--HFLYVS 257 (347)
T ss_dssp EEEEEEEEESSCTTCCSCCEEEEEEECTTS--CEEEEE
T ss_pred ceEEeeeeeecCCCCCCCCcceeEEECCCC--CEEEEE
Confidence 2 1222222111 347777787776 666665
No 103
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=93.59 E-value=1.9 Score=34.42 Aligned_cols=95 Identities=15% Similarity=0.159 Sum_probs=59.2
Q ss_pred CCCcceeEeCCCcEEEEEcCCC-eEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceE
Q 043355 36 PESRGLHYDDGTKLLISSTSNQ-IFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAF 114 (143)
Q Consensus 36 ~~~~~vFyDDank~v~avrsgg-v~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~ 114 (143)
..++.+-|+...+.|++--.++ +.=|.+... +....+.-.+++|.++.|+||++.|+.--.+.+|-+++..++...
T Consensus 151 ~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~---~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~ 227 (410)
T 1vyh_C 151 DSVQDISFDHSGKLLASCSADMTIKLWDFQGF---ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV 227 (410)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCCCEEETTSS---CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 3456666766555555553433 333433111 111112225669999999999999999999999999999887532
Q ss_pred EEEecCCCCcEEEEEeccCC
Q 043355 115 SHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 115 ~q~cK~k~~~IlGF~Wt~~~ 134 (143)
+..+.....|....|....
T Consensus 228 -~~~~~h~~~v~~~~~~~~g 246 (410)
T 1vyh_C 228 -KTFTGHREWVRMVRPNQDG 246 (410)
T ss_dssp -EEEECCSSCEEEEEECTTS
T ss_pred -EEEeCCCccEEEEEECCCC
Confidence 3334455667777776554
No 104
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=93.56 E-value=0.78 Score=35.65 Aligned_cols=105 Identities=10% Similarity=0.102 Sum_probs=66.4
Q ss_pred cCCCCcceeEeCCCcEEEEEcCCC-eEEEEEccCCCC-----CCCceecCCCCceeEEEecCCC-cEEEEecCCCeEEEE
Q 043355 34 SIPESRGLHYDDGTKLLISSTSNQ-IFSWKTVPFNPL-----ATSTSDSIPEGPILSIRFSLDT-KLIAIQRSSSEIQFW 106 (143)
Q Consensus 34 ~~~~~~~vFyDDank~v~avrsgg-v~gv~v~~~~p~-----~~~~~frid~G~I~sIKFS~D~-KiLAIQRs~~sVEFv 106 (143)
+...++.+-|....+.+++- .++ +.=|.+...... .++..+.-..++|.++.||||+ ++||.--.+..|.++
T Consensus 176 h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 254 (447)
T 3dw8_B 176 HTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLC 254 (447)
T ss_dssp CSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred CCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEE
Confidence 44557788888766666665 444 333444210000 0111233356799999999998 999999999999999
Q ss_pred EcCCCceE---EEEecCCCC------------cEEEEEeccCCCceEEEE
Q 043355 107 IRETSEAF---SHRCRSDSE------------NILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 107 n~~~~~~~---~q~cK~k~~------------~IlGF~Wt~~~~cdivlV 141 (143)
+..++... .+..+.... .|....|..+. ++++.
T Consensus 255 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~ 302 (447)
T 3dw8_B 255 DMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG--RYMMT 302 (447)
T ss_dssp ETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS--SEEEE
T ss_pred ECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCC--CEEEE
Confidence 99776431 233333332 79999998766 55543
No 105
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=93.49 E-value=1.7 Score=32.16 Aligned_cols=99 Identities=9% Similarity=0.078 Sum_probs=59.4
Q ss_pred cCCCCcceeEeCCC-cEEEEE-cCCCeEEEEEccCCCCC--CCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcC
Q 043355 34 SIPESRGLHYDDGT-KLLISS-TSNQIFSWKTVPFNPLA--TSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRE 109 (143)
Q Consensus 34 ~~~~~~~vFyDDan-k~v~av-rsggv~gv~v~~~~p~~--~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~ 109 (143)
+-..++.|=|...+ +.|++- ..+-+.=|.+....... +...++--.++|.++.||||+++|+.--.+..|.+++..
T Consensus 37 H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~ 116 (340)
T 4aow_A 37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT 116 (340)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeec
Confidence 44558888888554 445544 33456667873221110 111222246799999999999999999999999998886
Q ss_pred CCceEEEEecCCCCcEEEEEeccC
Q 043355 110 TSEAFSHRCRSDSENILGFFWTDC 133 (143)
Q Consensus 110 ~~~~~~q~cK~k~~~IlGF~Wt~~ 133 (143)
.+...... +.....+....|...
T Consensus 117 ~~~~~~~~-~~~~~~~~~~~~~~~ 139 (340)
T 4aow_A 117 TGTTTRRF-VGHTKDVLSVAFSSD 139 (340)
T ss_dssp TTEEEEEE-ECCSSCEEEEEECTT
T ss_pred ccceeeee-cCCCCceeEEEEeec
Confidence 66333332 223333444444443
No 106
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=93.42 E-value=1.5 Score=34.23 Aligned_cols=75 Identities=8% Similarity=0.088 Sum_probs=54.2
Q ss_pred cCCCCcceeEeCCCcEEEEEcCCC--eEEEEEccCCCCCCCceecC--CCCceeEEEecCCCcEEEEecCCCeEEEEEcC
Q 043355 34 SIPESRGLHYDDGTKLLISSTSNQ--IFSWKTVPFNPLATSTSDSI--PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRE 109 (143)
Q Consensus 34 ~~~~~~~vFyDDank~v~avrsgg--v~gv~v~~~~p~~~~~~fri--d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~ 109 (143)
+...++.+-|+...+.+.+--.+| +.=|.+ . ..+....++. ..++|.++.||||+++||.-=.+.+|.+++.+
T Consensus 194 h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~--~-~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 194 HTNPIKMVRLNRKSDMVATCSQDGTIIRVFKT--E-DGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTCSEEEEEET--T-TCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred cCCceEEEEECCCCCEEEEEeCCCCEEEEEEC--C-CCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence 445578888888666666665555 455655 2 1223345552 56799999999999999999999999999995
Q ss_pred CC
Q 043355 110 TS 111 (143)
Q Consensus 110 ~~ 111 (143)
++
T Consensus 271 ~~ 272 (355)
T 3vu4_A 271 ND 272 (355)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 107
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=93.25 E-value=0.27 Score=41.62 Aligned_cols=69 Identities=13% Similarity=-0.020 Sum_probs=44.9
Q ss_pred CCCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCC
Q 043355 36 PESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRET 110 (143)
Q Consensus 36 ~~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~ 110 (143)
..++.+-|... +.++....+.+.-|.+ . ..+...+....+.+.+++||||++.||.-+ +..|-.++..+
T Consensus 82 ~~v~~~~~spd-~~~~~~~~~~i~~~d~--~--~~~~~~l~~~~~~~~~~~~SpdG~~la~~~-~~~i~v~~~~~ 150 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFTQGGLVGFDM--L--ARKVTYLFDTNEETASLDFSPVGDRVAYVR-NHNLYIARGGK 150 (706)
T ss_dssp CCCEEEEETTT-TEEEEEETTEEEEEET--T--TTEEEEEECCTTCCTTCEECTTSSEEEEEE-TTEEEEEECBC
T ss_pred cCceeEEECCC-CeEEEEECCEEEEEEC--C--CCceEEccCCcccccCCcCCCCCCEEEEEE-CCeEEEEecCc
Confidence 34666666655 5555554555555554 2 112222222456889999999999999864 57899999887
No 108
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=93.23 E-value=2.6 Score=33.66 Aligned_cols=103 Identities=13% Similarity=0.040 Sum_probs=67.6
Q ss_pred cCCCCcceeEeCC---CcEEEEEcC-CCeEEEEEccCCCCCCCceecC-CCCceeEEEecCCCcEEEEecCCCeEEEEEc
Q 043355 34 SIPESRGLHYDDG---TKLLISSTS-NQIFSWKTVPFNPLATSTSDSI-PEGPILSIRFSLDTKLIAIQRSSSEIQFWIR 108 (143)
Q Consensus 34 ~~~~~~~vFyDDa---nk~v~avrs-ggv~gv~v~~~~p~~~~~~fri-d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~ 108 (143)
....++.+-|... .+.|++... +.+.=|.+ .. ......+.. -.++|.++.|| |+++|+.--.+..|-+++.
T Consensus 194 h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~--~~-~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~ 269 (450)
T 2vdu_B 194 HVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHY--PQ-CFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDW 269 (450)
T ss_dssp CSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEE--SC-TTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEET
T ss_pred ccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEEC--CC-CceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEEC
Confidence 4445777777766 666666644 45555666 21 112223233 56799999999 9999999999999999999
Q ss_pred CCCceEEE-Eec-----------------------CCCCcEEEEEeccCCCceEEEEe
Q 043355 109 ETSEAFSH-RCR-----------------------SDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 109 ~~~~~~~q-~cK-----------------------~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
.++..... ... .....|.+..|.... +++++.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~ 325 (450)
T 2vdu_B 270 KTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL--PFVAFF 325 (450)
T ss_dssp TTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS--SEEEEE
T ss_pred CCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC--CEEEEE
Confidence 88743222 211 223568888888766 666553
No 109
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=93.16 E-value=2.4 Score=33.07 Aligned_cols=53 Identities=15% Similarity=0.103 Sum_probs=44.1
Q ss_pred ceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEEEecCCCCcEEEEEeccCC
Q 043355 81 PILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 81 ~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
.+.++.||||+++||.--.+..|.+++..++.... ........|.+.-|....
T Consensus 286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~-~l~~h~~~v~~l~~spdg 338 (354)
T 2pbi_B 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVS-ILFGHENRVSTLRVSPDG 338 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEE-EECCCSSCEEEEEECTTS
T ss_pred ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEE-EEECCCCcEEEEEECCCC
Confidence 67899999999999999999999999998876543 344566789999997665
No 110
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=93.10 E-value=1.4 Score=32.94 Aligned_cols=96 Identities=6% Similarity=0.019 Sum_probs=55.9
Q ss_pred ceeEeCCCcEEEEEcC-CC-eEEEEEccCCCCCC-CceecCCCCceeEEEecCCCcEEEEecCC-C--eEEEEEcCCCce
Q 043355 40 GLHYDDGTKLLISSTS-NQ-IFSWKTVPFNPLAT-STSDSIPEGPILSIRFSLDTKLIAIQRSS-S--EIQFWIRETSEA 113 (143)
Q Consensus 40 ~vFyDDank~v~avrs-gg-v~gv~v~~~~p~~~-~~~frid~G~I~sIKFS~D~KiLAIQRs~-~--sVEFvn~~~~~~ 113 (143)
.+-|+...+.+++... ++ +.-|.. .+ .+. ...+....++..++.||||++.|++-... . .|..++.+++..
T Consensus 44 ~~~~s~dg~~l~~~~~~~~~i~~~d~--~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~ 120 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFCQTLVQIET--QL-EPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF 120 (331)
T ss_dssp EEEECSSSCEEEEEESTTCEEEEEEC--SS-SSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE
T ss_pred eEEEcCCCCEEEEEeCCCCeEEEEEC--CC-CceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe
Confidence 5667777676776644 33 332332 11 111 12222244566559999999988865555 3 899999987744
Q ss_pred EEEEecCCCCcEEEEEeccCCCceEEEEe
Q 043355 114 FSHRCRSDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 114 ~~q~cK~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
.. ..+. .....+..|.... +.++++
T Consensus 121 ~~-~~~~-~~~~~~~~~spdg--~~l~~~ 145 (331)
T 3u4y_A 121 IS-TIPI-PYDAVGIAISPNG--NGLILI 145 (331)
T ss_dssp EE-EEEC-CTTEEEEEECTTS--SCEEEE
T ss_pred EE-EEEC-CCCccceEECCCC--CEEEEE
Confidence 32 2232 2345777887766 555554
No 111
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=92.97 E-value=0.65 Score=37.19 Aligned_cols=95 Identities=8% Similarity=0.019 Sum_probs=57.5
Q ss_pred CCcceeEeCCCcEEEEE--cCCCeEEEEEccCCCCCCCceecC--CCCceeEEEecC-CCcEEEEecCCCeEEEEEcCCC
Q 043355 37 ESRGLHYDDGTKLLISS--TSNQIFSWKTVPFNPLATSTSDSI--PEGPILSIRFSL-DTKLIAIQRSSSEIQFWIRETS 111 (143)
Q Consensus 37 ~~~~vFyDDank~v~av--rsggv~gv~v~~~~p~~~~~~fri--d~G~I~sIKFS~-D~KiLAIQRs~~sVEFvn~~~~ 111 (143)
.++.+=|...+..++|+ ..|.+.=|.+ ... +.....+. -.++|.+|+||| |+++|+.-=.+.+|-+++.+++
T Consensus 121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~--~~~-~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~ 197 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKGGDIMLWNF--GIK-DKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN 197 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETTSCEEEECS--SCC-SCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEEEC--CCC-CceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC
Confidence 36777787665555655 3344555655 212 22233333 467999999998 6788888878899999999765
Q ss_pred ce-EEEEecCCCCcEEEEEeccCC
Q 043355 112 EA-FSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 112 ~~-~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
.. ...........+..+-|....
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~ 221 (435)
T 4e54_B 198 ILRVFASSDTINIWFCSLDVSASS 221 (435)
T ss_dssp EEEEEECCSSCSCCCCCEEEETTT
T ss_pred ceeEEeccCCCCccEEEEEECCCC
Confidence 22 222222233345555555443
No 112
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=92.88 E-value=1.4 Score=33.82 Aligned_cols=101 Identities=12% Similarity=0.105 Sum_probs=56.9
Q ss_pred CcceeEeCCCcEEEEEc--CCCeEEEEEccCCCCCCCceecC--CC-CceeEEEecCCCcEEEE-ecC-CCeEEEEEcC-
Q 043355 38 SRGLHYDDGTKLLISST--SNQIFSWKTVPFNPLATSTSDSI--PE-GPILSIRFSLDTKLIAI-QRS-SSEIQFWIRE- 109 (143)
Q Consensus 38 ~~~vFyDDank~v~avr--sggv~gv~v~~~~p~~~~~~fri--d~-G~I~sIKFS~D~KiLAI-QRs-~~sVEFvn~~- 109 (143)
.+.+-|+...+.+++.. .+.+.-|.+... .......+.. .. ..+.+|.||||+|.|++ -|. +.+|..+...
T Consensus 213 ~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g-~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~ 291 (361)
T 3scy_A 213 PRHLIFNSDGKFAYLINEIGGTVIAFRYADG-MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDE 291 (361)
T ss_dssp EEEEEECTTSSEEEEEETTTCEEEEEEEETT-EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECT
T ss_pred CeEEEEcCCCCEEEEEcCCCCeEEEEEecCC-ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcC
Confidence 44566777666676664 344444555211 0011112221 11 24679999999998755 555 6899998884
Q ss_pred -CCc-eEEEEecCCCCcEEEEEeccCCCceEEEEe
Q 043355 110 -TSE-AFSHRCRSDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 110 -~~~-~~~q~cK~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
++. ........ ...+.++.|.... +.++++
T Consensus 292 ~~g~~~~~~~~~~-g~~~~~~~~spdg--~~l~~~ 323 (361)
T 3scy_A 292 TNGTLTKVGYQLT-GIHPRNFIITPNG--KYLLVA 323 (361)
T ss_dssp TTCCEEEEEEEEC-SSCCCEEEECTTS--CEEEEE
T ss_pred CCCcEEEeeEecC-CCCCceEEECCCC--CEEEEE
Confidence 443 23333332 3456678887666 666654
No 113
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=92.82 E-value=0.18 Score=41.99 Aligned_cols=60 Identities=8% Similarity=0.059 Sum_probs=42.7
Q ss_pred CCCceeEEEecCCCcEEEEecC-CCeEEEEEcCCCceEEEEecCCCCcEEEEEeccCCCceEEEE
Q 043355 78 PEGPILSIRFSLDTKLIAIQRS-SSEIQFWIRETSEAFSHRCRSDSENILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs-~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~~cdivlV 141 (143)
...+|.++.||||+|.||.... +.+++.+..+++ +..+........+.+..|. +. ++++.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g-~~~~lt~~~~~~~~~~~~s--pd-~~l~~ 80 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG-ETVKLNREPINSVLDPHYG--VG-RVILV 80 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT-EEEECCSSCCSEECEECTT--CS-EEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCC-CcEeeecccccccccccCC--CC-eEEEE
Confidence 3458999999999999998765 788999997544 3444444333567888887 32 56654
No 114
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=92.78 E-value=1.1 Score=33.33 Aligned_cols=60 Identities=12% Similarity=-0.005 Sum_probs=37.9
Q ss_pred ceeEEEecCCCcE-EEEecCCCeEEEEEcCCCceEEE-EecCC----CCcEEEEEeccCCCceEEEEe
Q 043355 81 PILSIRFSLDTKL-IAIQRSSSEIQFWIRETSEAFSH-RCRSD----SENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 81 ~I~sIKFS~D~Ki-LAIQRs~~sVEFvn~~~~~~~~q-~cK~k----~~~IlGF~Wt~~~~cdivlVT 142 (143)
.+.++.||||++. ++....+..|-.++..++..... ..... ...+.++.|.... +.++++
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg--~~l~~~ 109 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDG--KEVYAT 109 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTS--SEEEEE
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCC--CEEEEE
Confidence 5679999999985 45666788999999988743322 21111 1225566676555 555543
No 115
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=92.78 E-value=2.8 Score=32.73 Aligned_cols=98 Identities=9% Similarity=0.128 Sum_probs=64.5
Q ss_pred cCCCCcceeEeCCCcEEEEEcCCCeEE-EEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCC-
Q 043355 34 SIPESRGLHYDDGTKLLISSTSNQIFS-WKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETS- 111 (143)
Q Consensus 34 ~~~~~~~vFyDDank~v~avrsggv~g-v~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~- 111 (143)
+...++.+-|....+.|++--.+|..- |.+ . .......+....+.|.+++||||++.||.--.+..+.+++....
T Consensus 63 H~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~--~-~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~ 139 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDS--F-TTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDK 139 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEET--T-TCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCT
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCeEEEEEC--C-CCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccc
Confidence 334577788877677777765565433 443 2 22333445556678999999999999999999999999987432
Q ss_pred ----ceEEEEecCCCCcEEEEEeccCC
Q 043355 112 ----EAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 112 ----~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
.............|.+..|....
T Consensus 140 ~~~~~~~~~~~~~h~~~v~~~~~~~~~ 166 (354)
T 2pbi_B 140 NENMAAKKKSVAMHTNYLSACSFTNSD 166 (354)
T ss_dssp TCCSGGGCEEEEECSSCEEEEEECSSS
T ss_pred cccccccceeeeccCCcEEEEEEeCCC
Confidence 12222333445667777776654
No 116
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=92.77 E-value=1.1 Score=37.90 Aligned_cols=97 Identities=7% Similarity=0.101 Sum_probs=53.8
Q ss_pred CcceeEeCCCcEEEEEcCCCeEEEEEccCC-CCCCCceecCCCCc---------------eeEEEecCCCcEEEEec---
Q 043355 38 SRGLHYDDGTKLLISSTSNQIFSWKTVPFN-PLATSTSDSIPEGP---------------ILSIRFSLDTKLIAIQR--- 98 (143)
Q Consensus 38 ~~~vFyDDank~v~avrsggv~gv~v~~~~-p~~~~~~frid~G~---------------I~sIKFS~D~KiLAIQR--- 98 (143)
+..+-|....+.|..++.+.+.-|.+...+ ...+.......... +.++.||||++.||.-+
T Consensus 123 ~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~ 202 (706)
T 2z3z_A 123 TASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQ 202 (706)
T ss_dssp CTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEEC
T ss_pred ccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECC
Confidence 555666655555655666666666663200 00111211111112 58999999999999876
Q ss_pred ------------------------------CCCeEEEEEcCCCceEEEEe-cCCCCcEEEEEeccCC
Q 043355 99 ------------------------------SSSEIQFWIRETSEAFSHRC-RSDSENILGFFWTDCP 134 (143)
Q Consensus 99 ------------------------------s~~sVEFvn~~~~~~~~q~c-K~k~~~IlGF~Wt~~~ 134 (143)
....|-.++..++....... ......+..+.|..+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 269 (706)
T 2z3z_A 203 SMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDE 269 (706)
T ss_dssp TTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTS
T ss_pred CCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCC
Confidence 33556677776664322111 1223457788887665
No 117
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=92.50 E-value=0.24 Score=38.92 Aligned_cols=61 Identities=16% Similarity=0.149 Sum_probs=46.0
Q ss_pred CCCceeEEEecC-CCcEEEEecCCCeEEEEEcCC---CceEEEEec-CCCCcEEEEEeccCCCceEEE
Q 043355 78 PEGPILSIRFSL-DTKLIAIQRSSSEIQFWIRET---SEAFSHRCR-SDSENILGFFWTDCPLCDFVV 140 (143)
Q Consensus 78 d~G~I~sIKFS~-D~KiLAIQRs~~sVEFvn~~~---~~~~~q~cK-~k~~~IlGF~Wt~~~~cdivl 140 (143)
-.++|.+++||| |+++||.--.+.+|.+++..+ +..+..... .....|.+..|..+. +.++
T Consensus 62 h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~ 127 (437)
T 3gre_A 62 EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNF--DAFA 127 (437)
T ss_dssp TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTS--SEEE
T ss_pred CCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCC--CEEE
Confidence 457999999999 999999999999999999955 432221111 246779999998765 5544
No 118
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=92.32 E-value=1.8 Score=37.34 Aligned_cols=62 Identities=8% Similarity=0.027 Sum_probs=40.8
Q ss_pred CCceeEEEecCCCcEEEEecC-----CCeEEEEEcCC------Cc-eEEEEecCCCCcEEEEEeccCCCceEEEEeC
Q 043355 79 EGPILSIRFSLDTKLIAIQRS-----SSEIQFWIRET------SE-AFSHRCRSDSENILGFFWTDCPLCDFVVVKN 143 (143)
Q Consensus 79 ~G~I~sIKFS~D~KiLAIQRs-----~~sVEFvn~~~------~~-~~~q~cK~k~~~IlGF~Wt~~~~cdivlVTn 143 (143)
++.+.++.||||+|.|++... ..+|-.++..+ +. +..+..... ..+...++-+.. .+++.+|
T Consensus 232 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~dg~--~l~~~s~ 305 (710)
T 2xdw_A 232 PKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF-EGEYDYVTNEGT--VFTFKTN 305 (710)
T ss_dssp TTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS-SSCEEEEEEETT--EEEEEEC
T ss_pred CeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCC-CcEEEEEeccCC--EEEEEEC
Confidence 445789999999999998764 56777888765 42 333333322 334555666666 7777765
No 119
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=92.06 E-value=1.3 Score=37.49 Aligned_cols=73 Identities=8% Similarity=0.080 Sum_probs=46.8
Q ss_pred CcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCc
Q 043355 38 SRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSE 112 (143)
Q Consensus 38 ~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~ 112 (143)
+..+-|..-.+.|++...+.+.-|.+.... ......+.-..+.+.+++||||+|.||..+. ..|-.++..++.
T Consensus 111 v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~-~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~ 183 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLGGELYLYDLKQEG-KAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGR 183 (741)
T ss_dssp SCCCEECTTSSEEEEEETTEEEEEESSSCS-TTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTE
T ss_pred cceeEECCCCCEEEEEeCCcEEEEECCCCC-cceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCC
Confidence 556667766666665555666666662210 0012222224568999999999999998875 478888887764
No 120
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=91.97 E-value=3.6 Score=32.21 Aligned_cols=96 Identities=9% Similarity=0.017 Sum_probs=59.0
Q ss_pred CCCcceeEeCCCcEEEEEcCCC-eEEEEEccCCCCCCCceecC-------CCCceeEEEecCCCcEEEEecCCCeEEEEE
Q 043355 36 PESRGLHYDDGTKLLISSTSNQ-IFSWKTVPFNPLATSTSDSI-------PEGPILSIRFSLDTKLIAIQRSSSEIQFWI 107 (143)
Q Consensus 36 ~~~~~vFyDDank~v~avrsgg-v~gv~v~~~~p~~~~~~fri-------d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn 107 (143)
..++.+-|....+.+++--.+| +.=|.+.. ......+.. ..+.|.++.||||+++|+.--++..|.+++
T Consensus 250 ~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd 326 (380)
T 3iz6_a 250 GDINSVKFFPDGQRFGTGSDDGTCRLFDMRT---GHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD 326 (380)
T ss_dssp SCCCEEEECTTSSEEEEECSSSCEEEEETTT---TEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEE
T ss_pred CCeEEEEEecCCCeEEEEcCCCeEEEEECCC---CcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEE
Confidence 3466676766555555553333 33344411 111111111 112489999999999999999999999999
Q ss_pred cCCCceEEEEe---cCCCCcEEEEEeccCC
Q 043355 108 RETSEAFSHRC---RSDSENILGFFWTDCP 134 (143)
Q Consensus 108 ~~~~~~~~q~c---K~k~~~IlGF~Wt~~~ 134 (143)
..++....... +.....|.+.-|....
T Consensus 327 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 356 (380)
T 3iz6_a 327 TLLAEMVLNLGTLQNSHEGRISCLGLSSDG 356 (380)
T ss_dssp TTTCCEEEEECCSCSSCCCCCCEEEECSSS
T ss_pred CCCCceEEEEecccCCCCCceEEEEECCCC
Confidence 97775443321 3445668888887655
No 121
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=91.95 E-value=2.9 Score=36.38 Aligned_cols=60 Identities=5% Similarity=0.023 Sum_probs=39.5
Q ss_pred ceeEEEecCCCcEEEEecCC----CeEEEEEcCCCc-eEEEEecCCCCcEEEEEeccCCCceEEEEeC
Q 043355 81 PILSIRFSLDTKLIAIQRSS----SEIQFWIRETSE-AFSHRCRSDSENILGFFWTDCPLCDFVVVKN 143 (143)
Q Consensus 81 ~I~sIKFS~D~KiLAIQRs~----~sVEFvn~~~~~-~~~q~cK~k~~~IlGF~Wt~~~~cdivlVTn 143 (143)
-+.++.+|||+|.|++.++. ++|=.++..++. ++........ .....++-+.. .++|+||
T Consensus 235 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~-~~~~~~~~~g~--~l~~~t~ 299 (693)
T 3iuj_A 235 RYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD-ADVSLVDNKGS--TLYLLTN 299 (693)
T ss_dssp SEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS-SCEEEEEEETT--EEEEEEC
T ss_pred EEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC-ceEEEEeccCC--EEEEEEC
Confidence 46899999999999987753 477777776653 4444333332 23444455566 7888876
No 122
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=91.89 E-value=3.3 Score=31.59 Aligned_cols=55 Identities=18% Similarity=0.266 Sum_probs=42.2
Q ss_pred CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEEEecCCCCcEEEEEeccCC
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
-.++|.++.||||+++||.--.+.+|.+++..++...... + ....|....|..+.
T Consensus 195 h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~-~-~~~~v~~~~~sp~~ 249 (319)
T 3frx_A 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL-S-AQDEVFSLAFSPNR 249 (319)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE-E-CCSCEEEEEECSSS
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe-c-CCCcEEEEEEcCCC
Confidence 5669999999999999999999999999999887433222 1 23457777776654
No 123
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=91.79 E-value=2 Score=32.37 Aligned_cols=58 Identities=22% Similarity=0.178 Sum_probs=35.9
Q ss_pred CceeEEEecCCCcEEEEecCC---Ce--EEEEEcCCCceEEEEecCCCCcEEEEEeccCCCceEEEE
Q 043355 80 GPILSIRFSLDTKLIAIQRSS---SE--IQFWIRETSEAFSHRCRSDSENILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 80 G~I~sIKFS~D~KiLAIQRs~---~s--VEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~~cdivlV 141 (143)
+.+.+++||||++.||..+.. .. |-.++..++... +..... . +.++.|.... -.|++.
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~-~l~~~~-~-~~~~~wspdg-~~l~~~ 121 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK-KILEAK-N-IRSLEWNEDS-RKLLIV 121 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE-EEEEES-E-EEEEEECTTS-SEEEEE
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE-EEEcCC-C-ccceeECCCC-CEEEEE
Confidence 667899999999999877643 23 444555665432 222222 2 8889997443 156554
No 124
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=91.77 E-value=3.8 Score=37.25 Aligned_cols=97 Identities=9% Similarity=0.101 Sum_probs=63.9
Q ss_pred CCCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecC-CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceE
Q 043355 36 PESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSI-PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAF 114 (143)
Q Consensus 36 ~~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~fri-d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~ 114 (143)
..++.+-|+...+.|.+-..+|... + .+.......+.. .+++|.+++||| +++||.--.+.+|.+|+..++...
T Consensus 18 ~~V~~lafspdg~~lAsgs~Dg~I~--l--w~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~ 92 (902)
T 2oaj_A 18 SKPIAAAFDFTQNLLAIATVTGEVH--I--YGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVL 92 (902)
T ss_dssp SCEEEEEEETTTTEEEEEETTSEEE--E--ECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEE
T ss_pred CCcEEEEECCCCCEEEEEeCCCEEE--E--EeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEE
Confidence 3488899998776666555566332 2 222222233334 466999999999 777887788999999999887544
Q ss_pred EEEecCCCCcEEEEEeccCCCceEEEE
Q 043355 115 SHRCRSDSENILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 115 ~q~cK~k~~~IlGF~Wt~~~~cdivlV 141 (143)
.... ....|..+.|-... +.+++
T Consensus 93 ~~~~--~~~~V~~v~~sp~g--~~l~s 115 (902)
T 2oaj_A 93 TTVF--VPGKITSIDTDASL--DWMLI 115 (902)
T ss_dssp EEEE--CSSCEEEEECCTTC--SEEEE
T ss_pred EEEc--CCCCEEEEEECCCC--CEEEE
Confidence 3322 33568888886655 55543
No 125
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=91.75 E-value=3.5 Score=31.61 Aligned_cols=103 Identities=10% Similarity=0.154 Sum_probs=65.3
Q ss_pred ceecCCCCcceeE-----eC-CCcEEEEEc-CCCeEEEEEccCCCCC----CCceecCCCCceeEEEecCCCcEEEEecC
Q 043355 31 LRCSIPESRGLHY-----DD-GTKLLISST-SNQIFSWKTVPFNPLA----TSTSDSIPEGPILSIRFSLDTKLIAIQRS 99 (143)
Q Consensus 31 lR~~~~~~~~vFy-----DD-ank~v~avr-sggv~gv~v~~~~p~~----~~~~frid~G~I~sIKFS~D~KiLAIQRs 99 (143)
|+-+-..++.+-| .. ..+.|++-- .+-+.=|.+....... +...+.--.++|.+++||||+++|+.-=.
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~ 96 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW 96 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEET
T ss_pred eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcC
Confidence 3434445666655 32 233344433 3456667773221110 11122235669999999999999999999
Q ss_pred CCeEEEEEcCCCceEEEEecCCCCcEEEEEeccCC
Q 043355 100 SSEIQFWIRETSEAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 100 ~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
+.+|-+++..++... +..+.....|.+..|....
T Consensus 97 D~~v~lwd~~~~~~~-~~~~~h~~~v~~v~~sp~~ 130 (343)
T 2xzm_R 97 DKTLRLWDLRTGTTY-KRFVGHQSEVYSVAFSPDN 130 (343)
T ss_dssp TSEEEEEETTSSCEE-EEEECCCSCEEEEEECSST
T ss_pred CCcEEEEECCCCcEE-EEEcCCCCcEEEEEECCCC
Confidence 999999999887543 3445566779999997665
No 126
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=91.70 E-value=5.3 Score=34.99 Aligned_cols=97 Identities=7% Similarity=0.129 Sum_probs=65.3
Q ss_pred CCCcceeEeCC--CcEEEEEcCCC-eEEEEEccCCCCCCCceecCCCCceeEEEecC-------------CCcEEEEecC
Q 043355 36 PESRGLHYDDG--TKLLISSTSNQ-IFSWKTVPFNPLATSTSDSIPEGPILSIRFSL-------------DTKLIAIQRS 99 (143)
Q Consensus 36 ~~~~~vFyDDa--nk~v~avrsgg-v~gv~v~~~~p~~~~~~frid~G~I~sIKFS~-------------D~KiLAIQRs 99 (143)
..++.+-|... .+.+++...+| +.=|.+... .......+.-..++|.++.|+| |+++|++--.
T Consensus 100 ~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~-~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~ 178 (753)
T 3jro_A 100 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN-GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 178 (753)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSEEEEEECCSS-SCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEET
T ss_pred CCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC-CCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEEC
Confidence 34666767665 45555554444 444555221 1122333334667999999999 6899999999
Q ss_pred CCeEEEEEcCCCc---eEEEEecCCCCcEEEEEeccC
Q 043355 100 SSEIQFWIRETSE---AFSHRCRSDSENILGFFWTDC 133 (143)
Q Consensus 100 ~~sVEFvn~~~~~---~~~q~cK~k~~~IlGF~Wt~~ 133 (143)
+..|-+++..++. ...+..+.....|.+..|...
T Consensus 179 dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 215 (753)
T 3jro_A 179 DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215 (753)
T ss_dssp TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred CCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccC
Confidence 9999999996663 444555666788999999877
No 127
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=91.56 E-value=2 Score=31.57 Aligned_cols=92 Identities=12% Similarity=0.130 Sum_probs=51.6
Q ss_pred CcceeEeCCCcEEEEEcC-C-CeEEEEEccCCCCCCCceecCCC-C----ceeEEEecCCCcEEEEec------------
Q 043355 38 SRGLHYDDGTKLLISSTS-N-QIFSWKTVPFNPLATSTSDSIPE-G----PILSIRFSLDTKLIAIQR------------ 98 (143)
Q Consensus 38 ~~~vFyDDank~v~avrs-g-gv~gv~v~~~~p~~~~~~frid~-G----~I~sIKFS~D~KiLAIQR------------ 98 (143)
...+-|+...+.+++..+ + .+.-|.. .+ .+....+.... + .+.++.||||++.|++--
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~--~~-~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 112 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDL--VT-GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV 112 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEET--TT-CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEEC--CC-CCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccc
Confidence 455667766666665533 2 3333333 11 11112233321 1 677999999998888874
Q ss_pred CCCeEEEEEcCCCceEEEEecCCCCcEEEEEeccCC
Q 043355 99 SSSEIQFWIRETSEAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 99 s~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
.+..|-.++..++..... ... ...+.+..|....
T Consensus 113 ~~~~i~v~d~~~~~~~~~-~~~-~~~~~~~~~s~dg 146 (337)
T 1pby_B 113 QPTRVALYDAETLSRRKA-FEA-PRQITMLAWARDG 146 (337)
T ss_dssp CCCEEEEEETTTTEEEEE-EEC-CSSCCCEEECTTS
T ss_pred cCceEEEEECCCCcEEEE-EeC-CCCcceeEECCCC
Confidence 468899999877643322 221 2335556666554
No 128
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=91.38 E-value=0.4 Score=39.89 Aligned_cols=37 Identities=16% Similarity=0.024 Sum_probs=28.7
Q ss_pred CCCceeEEEecCCCcEEEEecCCC--eEEEEEcCCCceE
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSS--EIQFWIRETSEAF 114 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~--sVEFvn~~~~~~~ 114 (143)
..|.+.++.||||+|.||.-..+. .|-.++.+++..-
T Consensus 193 ~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 193 GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence 567889999999999999554455 6777887777544
No 129
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=91.22 E-value=2.4 Score=33.44 Aligned_cols=88 Identities=11% Similarity=0.147 Sum_probs=59.3
Q ss_pred CCCcceeEeCCCcEEEEEcCCCe-EEEEEccCCCCCCCceecC-CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCce
Q 043355 36 PESRGLHYDDGTKLLISSTSNQI-FSWKTVPFNPLATSTSDSI-PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEA 113 (143)
Q Consensus 36 ~~~~~vFyDDank~v~avrsggv-~gv~v~~~~p~~~~~~fri-d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~ 113 (143)
..++.+-|+ .+.+++...+|. .=|.+ ......+.. ....+..+.|++|+++|+.-- +..|.+++.+++..
T Consensus 353 ~~v~~~~~~--~~~l~s~s~dg~v~vwd~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~ 424 (464)
T 3v7d_B 353 ALVGLLRLS--DKFLVSAAADGSIRGWDA-----NDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKL 424 (464)
T ss_dssp SCEEEEEEC--SSEEEEEETTSEEEEEET-----TTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCE
T ss_pred CcEEEEEEc--CCEEEEEeCCCcEEEEEC-----CCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcE
Confidence 346667776 356666655553 33444 222233344 455778899999999999987 78999999999866
Q ss_pred EEEEecCCCCcEEEEEec
Q 043355 114 FSHRCRSDSENILGFFWT 131 (143)
Q Consensus 114 ~~q~cK~k~~~IlGF~Wt 131 (143)
....-......|...-|-
T Consensus 425 ~~~~~~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 425 VHANILKDADQIWSVNFK 442 (464)
T ss_dssp EESCTTTTCSEEEEEEEE
T ss_pred EehhhccCCCcEEEEEec
Confidence 544344557889999884
No 130
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=91.19 E-value=0.61 Score=37.34 Aligned_cols=54 Identities=11% Similarity=0.198 Sum_probs=43.3
Q ss_pred CCceeEEEecC-CCcEEEEecCCCeEEEEEcCCCce-EEEEecCCCCcEEEEEecc
Q 043355 79 EGPILSIRFSL-DTKLIAIQRSSSEIQFWIRETSEA-FSHRCRSDSENILGFFWTD 132 (143)
Q Consensus 79 ~G~I~sIKFS~-D~KiLAIQRs~~sVEFvn~~~~~~-~~q~cK~k~~~IlGF~Wt~ 132 (143)
+..|.++.|+| +.++||+--.+.+|-+|+.+++.. ...........|.+..|.-
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p 174 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNP 174 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECS
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeC
Confidence 45799999999 568999999999999999987743 3344555677899999973
No 131
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=91.10 E-value=3.9 Score=30.80 Aligned_cols=97 Identities=12% Similarity=0.139 Sum_probs=64.0
Q ss_pred CCCcceeEeCCCcEEEEEcCCC-eEEEEEccCCCCCCCceecCCCCceeEEEecCC--CcEEEEecCCCeEEEEEcCCCc
Q 043355 36 PESRGLHYDDGTKLLISSTSNQ-IFSWKTVPFNPLATSTSDSIPEGPILSIRFSLD--TKLIAIQRSSSEIQFWIRETSE 112 (143)
Q Consensus 36 ~~~~~vFyDDank~v~avrsgg-v~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D--~KiLAIQRs~~sVEFvn~~~~~ 112 (143)
..++.+-|+...++|++--.++ +.=|.+... ..+....+.--+++|.+++||++ +++||.-=.+.+|-+++.+++.
T Consensus 10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~-~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~ 88 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR 88 (297)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEBCSS-CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEecCCC-CcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc
Confidence 3466677777666776665555 444555211 11222344446779999999975 8999999999999999998763
Q ss_pred -eEEEEecCCCCcEEEEEeccC
Q 043355 113 -AFSHRCRSDSENILGFFWTDC 133 (143)
Q Consensus 113 -~~~q~cK~k~~~IlGF~Wt~~ 133 (143)
......+.....|....|...
T Consensus 89 ~~~~~~~~~h~~~v~~v~~~p~ 110 (297)
T 2pm7_B 89 WSQIAVHAVHSASVNSVQWAPH 110 (297)
T ss_dssp BCCCEEECCCSSCEEEEEECCG
T ss_pred eEEEEEeecCCCceeEEEeCcC
Confidence 233334445667888888653
No 132
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=91.05 E-value=2.9 Score=37.91 Aligned_cols=64 Identities=20% Similarity=0.132 Sum_probs=42.9
Q ss_pred ecCCCCceeEEEecCCCcEEEEecCC------CeEEEEEcCCCceEEEEecCCCCcE-------EEEEeccCCCceEEEE
Q 043355 75 DSIPEGPILSIRFSLDTKLIAIQRSS------SEIQFWIRETSEAFSHRCRSDSENI-------LGFFWTDCPLCDFVVV 141 (143)
Q Consensus 75 frid~G~I~sIKFS~D~KiLAIQRs~------~sVEFvn~~~~~~~~q~cK~k~~~I-------lGF~Wt~~~~cdivlV 141 (143)
+.-..+.|.+++||||++.||..... ..|-.++..++.. +.-......+ .++.|.... ++++.
T Consensus 48 lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~--~~lt~~~~~~~~~~~~~~~~~~SpDg--~ll~~ 123 (1045)
T 1k32_A 48 IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI--KRITYFSGKSTGRRMFTDVAGFDPDG--NLIIS 123 (1045)
T ss_dssp EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE--EECCCCCEEEETTEECSEEEEECTTC--CEEEE
T ss_pred eeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe--EEcccCCCcccccccccccccCCCCC--EEEEE
Confidence 33366789999999999999976432 3566777776642 2222334445 788898777 66665
Q ss_pred e
Q 043355 142 K 142 (143)
Q Consensus 142 T 142 (143)
+
T Consensus 124 ~ 124 (1045)
T 1k32_A 124 T 124 (1045)
T ss_dssp E
T ss_pred E
Confidence 4
No 133
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=90.86 E-value=4.9 Score=31.61 Aligned_cols=61 Identities=20% Similarity=0.223 Sum_probs=45.3
Q ss_pred CCCceeEEEecC-CCcEEEEecCCCeEEEEEcCCCceEEEEe------cCCCCcEEEEEeccCCCceEEE
Q 043355 78 PEGPILSIRFSL-DTKLIAIQRSSSEIQFWIRETSEAFSHRC------RSDSENILGFFWTDCPLCDFVV 140 (143)
Q Consensus 78 d~G~I~sIKFS~-D~KiLAIQRs~~sVEFvn~~~~~~~~q~c------K~k~~~IlGF~Wt~~~~cdivl 140 (143)
-++.|.++.||| |+++||.--.+..|.+++..++......- ......|.+..|..+. +.++
T Consensus 205 ~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g--~~l~ 272 (393)
T 1erj_A 205 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG--QSVV 272 (393)
T ss_dssp CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS--SEEE
T ss_pred cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC--CEEE
Confidence 345788999999 99999999999999999998875433221 2345678888887665 5443
No 134
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=90.82 E-value=2.9 Score=31.91 Aligned_cols=33 Identities=12% Similarity=-0.041 Sum_probs=27.9
Q ss_pred ceeEEEecCCCcEEEEecCCCeEEEEEcCCCce
Q 043355 81 PILSIRFSLDTKLIAIQRSSSEIQFWIRETSEA 113 (143)
Q Consensus 81 ~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~ 113 (143)
.+.+..||||++.||....+..|-.++..++.+
T Consensus 82 ~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~ 114 (388)
T 3pe7_A 82 NTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE 114 (388)
T ss_dssp CSSSCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred CccceEEcCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 444678999999999999989999999988744
No 135
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=90.69 E-value=5.3 Score=36.36 Aligned_cols=54 Identities=13% Similarity=0.141 Sum_probs=43.9
Q ss_pred CCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCce-EEEEec----CCCCcEEEEEec
Q 043355 77 IPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEA-FSHRCR----SDSENILGFFWT 131 (143)
Q Consensus 77 id~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~-~~q~cK----~k~~~IlGF~Wt 131 (143)
.-.|+|.+++||||+ +||+--.+.+|-.++.+++.. +...|+ ...+.|....|.
T Consensus 573 ~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs 631 (902)
T 2oaj_A 573 ANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFV 631 (902)
T ss_dssp CCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEE
T ss_pred cCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEE
Confidence 367899999999999 999999999999999877633 333553 456679999997
No 136
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=90.49 E-value=1.1 Score=35.62 Aligned_cols=65 Identities=17% Similarity=0.124 Sum_probs=38.8
Q ss_pred CcceeEeCCCcEEEEEcC-CC-eEEEEEccCCCCCCCceecC-CCCceeEEEecCCCcEEEEecCCCeEEEEE
Q 043355 38 SRGLHYDDGTKLLISSTS-NQ-IFSWKTVPFNPLATSTSDSI-PEGPILSIRFSLDTKLIAIQRSSSEIQFWI 107 (143)
Q Consensus 38 ~~~vFyDDank~v~avrs-gg-v~gv~v~~~~p~~~~~~fri-d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn 107 (143)
+...|++...+.+++.-+ +| +.=|.+ ... ......+ -.++|.++.||||+++||+- ++..+-.+.
T Consensus 319 ~~~~~~~~~~~~~~~sgs~Dg~V~lwd~--~~~--~~~~~~~~~~~~V~svafspdG~~LA~a-s~~Gv~lvr 386 (393)
T 4gq1_A 319 LGACPHPRYMDYFATAHSQHGLIQLINT--YEK--DSNSIPIQLGMPIVDFCWHQDGSHLAIA-TEGSVLLTR 386 (393)
T ss_dssp SCCEECSSCTTEEEEEETTTTEEEEEET--TCT--TCCEEEEECSSCEEEEEECTTSSEEEEE-ESSEEEEEE
T ss_pred eeEEEccCCCCEEEEEECCCCEEEEEEC--CCC--cEEEEecCCCCcEEEEEEcCCCCEEEEE-eCCCeEEEE
Confidence 445666666666655533 34 333554 211 1222223 45699999999999999997 555565554
No 137
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=90.33 E-value=2.2 Score=36.82 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=36.1
Q ss_pred ceeEEEecCCCcEEEEecCCC-----eEEEEEcCCCceEEEEecCCCCcEEEEEeccCC
Q 043355 81 PILSIRFSLDTKLIAIQRSSS-----EIQFWIRETSEAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 81 ~I~sIKFS~D~KiLAIQRs~~-----sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
.+.++.||||++.||...+.. .|-+++.+++......-. ...+.++.|....
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~--~~~~~~~~wspDg 182 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--RVKFSCMAWTHDG 182 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--EECSCCEEECTTS
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc--CcccceEEEEeCC
Confidence 578999999999999887644 788899988854432111 1125567888543
No 138
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=89.57 E-value=4 Score=35.52 Aligned_cols=60 Identities=10% Similarity=-0.008 Sum_probs=40.5
Q ss_pred ceeEEEecCCCcEEEEecCC-----CeEEEEEcCCCc-e-EEEEecCCCCcEEEEEeccCCCceEEEEeC
Q 043355 81 PILSIRFSLDTKLIAIQRSS-----SEIQFWIRETSE-A-FSHRCRSDSENILGFFWTDCPLCDFVVVKN 143 (143)
Q Consensus 81 ~I~sIKFS~D~KiLAIQRs~-----~sVEFvn~~~~~-~-~~q~cK~k~~~IlGF~Wt~~~~cdivlVTn 143 (143)
.+.++.||||+|.|++.... .+|=.++..++. + ..+-.... .......|-+.. .+++.+|
T Consensus 269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~dg~--~l~~~s~ 335 (741)
T 1yr2_A 269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL-KAQWDFVDGVGD--QLWFVSG 335 (741)
T ss_dssp CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS-SSCEEEEEEETT--EEEEEEC
T ss_pred EEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC-CceEEEEeccCC--EEEEEEC
Confidence 58899999999999887743 477777777662 2 33333322 334566676667 7888775
No 139
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=89.09 E-value=7.7 Score=33.02 Aligned_cols=97 Identities=11% Similarity=0.115 Sum_probs=60.4
Q ss_pred cCCCCcceeEeCCCcEEEEEcCCCe-EEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCc
Q 043355 34 SIPESRGLHYDDGTKLLISSTSNQI-FSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSE 112 (143)
Q Consensus 34 ~~~~~~~vFyDDank~v~avrsggv-~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~ 112 (143)
+...++.+-|....+.|++--.+|. .=|.+ . .......+.-..++|.++.||||++.|+.--.+.+|-+++.....
T Consensus 429 h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~--~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~ 505 (694)
T 3dm0_A 429 HSHFVEDVVLSSDGQFALSGSWDGELRLWDL--A-AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC 505 (694)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEET--T-TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEEC--C-CCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc
Confidence 3344666777766666666644553 33444 1 111122233366799999999999999999899999999875543
Q ss_pred eEEEEe--cCCCCcEEEEEeccC
Q 043355 113 AFSHRC--RSDSENILGFFWTDC 133 (143)
Q Consensus 113 ~~~q~c--K~k~~~IlGF~Wt~~ 133 (143)
.+.... ......|.+..|..+
T Consensus 506 ~~~~~~~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 506 KYTISEGGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp EEEECSSTTSCSSCEEEEEECSC
T ss_pred ceeeccCCCCCCCcEEEEEEeCC
Confidence 333322 223445777777654
No 140
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=88.74 E-value=2 Score=36.40 Aligned_cols=19 Identities=21% Similarity=0.169 Sum_probs=15.6
Q ss_pred eeEEEecCCCcEEEEecCC
Q 043355 82 ILSIRFSLDTKLIAIQRSS 100 (143)
Q Consensus 82 I~sIKFS~D~KiLAIQRs~ 100 (143)
+.++.||||++.||.-+.+
T Consensus 211 ~~~~~~SpDg~~l~~~~~d 229 (741)
T 2ecf_A 211 HTGYWWAPDDSAIAYARID 229 (741)
T ss_dssp CCSEEECTTSSCEEEEEEE
T ss_pred ccceEECCCCCEEEEEEEc
Confidence 5789999999988887543
No 141
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=88.66 E-value=6 Score=34.06 Aligned_cols=98 Identities=9% Similarity=-0.022 Sum_probs=52.3
Q ss_pred cceeEeCCCcEEEEEcCCC--------------eEEEEEccCCC-CCCCceecC--CCCceeEEEecCCCcEEEEecCCC
Q 043355 39 RGLHYDDGTKLLISSTSNQ--------------IFSWKTVPFNP-LATSTSDSI--PEGPILSIRFSLDTKLIAIQRSSS 101 (143)
Q Consensus 39 ~~vFyDDank~v~avrsgg--------------v~gv~v~~~~p-~~~~~~fri--d~G~I~sIKFS~D~KiLAIQRs~~ 101 (143)
..+-|...++.|+..+.+. +.-|.+ .++ .+....+.. .++.+.++.||||+|.|++.+...
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l--~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 248 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTL--GTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRG 248 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEET--TSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEET
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEEC--CCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCC
Confidence 4455554455555554422 555555 323 222344444 235788999999999999988655
Q ss_pred ----eEEEEEcCCCceEEEEecCCCCcEEEEEeccCCCceEEEEeC
Q 043355 102 ----EIQFWIRETSEAFSHRCRSDSENILGFFWTDCPLCDFVVVKN 143 (143)
Q Consensus 102 ----sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~~cdivlVTn 143 (143)
+|=.++.+++. ..+... ....+....| ... ++++.||
T Consensus 249 ~~~~~l~~~~~~~~~-~~~l~~-~~~~~~~~~~-~~g--~l~~~s~ 289 (695)
T 2bkl_A 249 WSENDVYWKRPGEKD-FRLLVK-GVGAKYEVHA-WKD--RFYVLTD 289 (695)
T ss_dssp TTEEEEEEECTTCSS-CEEEEE-CSSCCEEEEE-ETT--EEEEEEC
T ss_pred CCceEEEEEcCCCCc-eEEeec-CCCceEEEEe-cCC--cEEEEEC
Confidence 44444434442 222222 2233456666 334 3555554
No 142
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=88.18 E-value=8.1 Score=30.36 Aligned_cols=88 Identities=9% Similarity=0.205 Sum_probs=59.9
Q ss_pred CcceeEeCCCcEEEEEc-CCCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEE
Q 043355 38 SRGLHYDDGTKLLISST-SNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSH 116 (143)
Q Consensus 38 ~~~vFyDDank~v~avr-sggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q 116 (143)
++.+.||+ +.|++.. .|.+.-|.+ . ..+....+.--.++|.+++|++|+ +|+.--.+.+|-+++.+++. ..+
T Consensus 125 ~~~~~~~~--~~l~sgs~dg~i~vwd~--~-~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~-~~~ 197 (464)
T 3v7d_B 125 ITCLQFED--NYVITGADDKMIRVYDS--I-NKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC-CTH 197 (464)
T ss_dssp EEEEEEET--TEEEEEETTSCEEEEET--T-TTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE-EEE
T ss_pred EEEEEECC--CEEEEEcCCCcEEEEEC--C-CCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc-EEE
Confidence 35567764 3555553 455555665 2 112223333467799999999999 78888889999999998874 344
Q ss_pred EecCCCCcEEEEEecc
Q 043355 117 RCRSDSENILGFFWTD 132 (143)
Q Consensus 117 ~cK~k~~~IlGF~Wt~ 132 (143)
..+.....|.+..|..
T Consensus 198 ~~~~h~~~v~~l~~~~ 213 (464)
T 3v7d_B 198 VFEGHNSTVRCLDIVE 213 (464)
T ss_dssp EECCCSSCEEEEEEEE
T ss_pred EECCCCCccEEEEEec
Confidence 5566677888888874
No 143
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=88.15 E-value=7.8 Score=30.11 Aligned_cols=61 Identities=5% Similarity=0.013 Sum_probs=39.6
Q ss_pred CceeEEEecCCCcEEEE-ecCCCeEEEEEcC-CCce-EEEEec--CCCCcEEEEEeccCCCceEEEEe
Q 043355 80 GPILSIRFSLDTKLIAI-QRSSSEIQFWIRE-TSEA-FSHRCR--SDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 80 G~I~sIKFS~D~KiLAI-QRs~~sVEFvn~~-~~~~-~~q~cK--~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
..+.++.||||+|.|++ -+...+|..++.. ++.. ....-+ ......-++.|.... +.++++
T Consensus 145 ~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg--~~l~v~ 210 (365)
T 1jof_A 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTG--NYLYAL 210 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTS--SEEEEE
T ss_pred CcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCC--CEEEEE
Confidence 37899999999997776 5667899999887 6632 122222 113446677776555 555543
No 144
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=88.04 E-value=2.9 Score=31.17 Aligned_cols=70 Identities=16% Similarity=0.179 Sum_probs=47.7
Q ss_pred CcceeEeCCCcEEEEE--cCCCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCc
Q 043355 38 SRGLHYDDGTKLLISS--TSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSE 112 (143)
Q Consensus 38 ~~~vFyDDank~v~av--rsggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~ 112 (143)
..++-||...+.|+.+ ..+++.-|.. +.....+....+.+.+|.|++|+++++.......|..++..++.
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~-----~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~ 101 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQNRTWAWSD-----DGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGE 101 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEET-----TSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCC
T ss_pred ccCCeEeCCCCEEEEEeCCCCEEEEEEC-----CCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCc
Confidence 3467888776644444 3455544443 22233444566788999999999999998888889888886663
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=87.88 E-value=3.1 Score=30.56 Aligned_cols=72 Identities=13% Similarity=0.021 Sum_probs=45.4
Q ss_pred CcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceE
Q 043355 38 SRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAF 114 (143)
Q Consensus 38 ~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~ 114 (143)
...+-|+...+.+++. .+.+.-|.+ .+. +....+. ....+.++.||||++.|++--.+.+|.+++.+++...
T Consensus 243 ~~~~~~s~dg~~l~~~-~~~v~~~d~--~~~-~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 243 YFSTAVNPAKTRAFGA-YNVLESFDL--EKN-ASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp EEEEEECTTSSEEEEE-ESEEEEEET--TTT-EEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred eeeEEECCCCCEEEEe-CCeEEEEEC--CCC-cCcceec-CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 3346677666666665 454444444 111 1111222 2336789999999998888777889999999887543
No 146
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=87.79 E-value=4.7 Score=36.52 Aligned_cols=53 Identities=11% Similarity=0.244 Sum_probs=41.2
Q ss_pred ceeEEEecCCCcEEEEecCCCeEEEEEcCCCce------EEEEe----cCCCCcEEEEEeccC
Q 043355 81 PILSIRFSLDTKLIAIQRSSSEIQFWIRETSEA------FSHRC----RSDSENILGFFWTDC 133 (143)
Q Consensus 81 ~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~------~~q~c----K~k~~~IlGF~Wt~~ 133 (143)
.|.++.||||+++||+-=.+.+|.+++..++.. ..++- ......|...-|-..
T Consensus 131 sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd 193 (588)
T 2j04_A 131 TYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED 193 (588)
T ss_dssp CEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT
T ss_pred cEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC
Confidence 499999999999999999999999999987742 22332 223457999988743
No 147
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=87.66 E-value=6.7 Score=28.83 Aligned_cols=98 Identities=13% Similarity=0.098 Sum_probs=64.5
Q ss_pred cCCCCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCce
Q 043355 34 SIPESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEA 113 (143)
Q Consensus 34 ~~~~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~ 113 (143)
....++.+-|....+.|++.-.++...+-- ................+..+.++++++.|+.--.+..+-+++......
T Consensus 85 h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~ 162 (340)
T 4aow_A 85 HSHFVSDVVISSDGQFALSGSWDGTLRLWD--LTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK 162 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEE--TTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE
T ss_pred CCCCEEEEEECCCCCEEEEEcccccceEEe--ecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce
Confidence 345577788887777777776666443332 212222333334667889999999999999888888898888766655
Q ss_pred EEEEecCCCCcEEEEEeccC
Q 043355 114 FSHRCRSDSENILGFFWTDC 133 (143)
Q Consensus 114 ~~q~cK~k~~~IlGF~Wt~~ 133 (143)
...........+....|..+
T Consensus 163 ~~~~~~~~~~~v~~~~~~~~ 182 (340)
T 4aow_A 163 YTVQDESHSEWVSCVRFSPN 182 (340)
T ss_dssp EEECSSSCSSCEEEEEECSC
T ss_pred EEEEeccccCcccceEEccC
Confidence 55555555555666555544
No 148
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=87.26 E-value=2.5 Score=31.88 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.7
Q ss_pred eeEEEecCCCcEEEEecC
Q 043355 82 ILSIRFSLDTKLIAIQRS 99 (143)
Q Consensus 82 I~sIKFS~D~KiLAIQRs 99 (143)
+.+++||||++.||....
T Consensus 106 ~~~~~wspdg~~l~~~~~ 123 (347)
T 2gop_A 106 IRSLEWNEDSRKLLIVGF 123 (347)
T ss_dssp EEEEEECTTSSEEEEEEE
T ss_pred ccceeECCCCCEEEEEEc
Confidence 899999999998888753
No 149
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=86.95 E-value=3.9 Score=37.08 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=39.0
Q ss_pred CCCceeEEEecCCCcEEEEecCC----------CeEEEEEcCCCceEEEEecCCCCcEEEEEeccCC
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSS----------SEIQFWIRETSEAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~----------~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
..++|.++.||||++.||.-... .+|-.++..++. ..........+....|....
T Consensus 419 ~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~--~~~l~~~~~~~~~~~~spdG 483 (1045)
T 1k32_A 419 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK--IFAATTENSHDYAPAFDADS 483 (1045)
T ss_dssp SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE--EEECSCSSSBEEEEEECTTS
T ss_pred CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc--EEEeeCCCcccCCceEcCCC
Confidence 45688999999999988876553 488899888775 22233344557777787665
No 150
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=86.94 E-value=8.3 Score=32.83 Aligned_cols=59 Identities=5% Similarity=0.017 Sum_probs=39.9
Q ss_pred ceeEEEecCCCcEEEEecCCCeEEEEEc--CCCceEEEEecCCCCcEEEEEecc----CCCceEEEEeC
Q 043355 81 PILSIRFSLDTKLIAIQRSSSEIQFWIR--ETSEAFSHRCRSDSENILGFFWTD----CPLCDFVVVKN 143 (143)
Q Consensus 81 ~I~sIKFS~D~KiLAIQRs~~sVEFvn~--~~~~~~~q~cK~k~~~IlGF~Wt~----~~~cdivlVTn 143 (143)
.+.+++||||++.|++-=...+|-.++. .++.. ....+.+ ....++.+.. .. +.+++.|
T Consensus 180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~-~~~i~~g-~~p~~va~sp~~~~dg--~~l~v~~ 244 (543)
T 1nir_A 180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK-VAEIKIG-IEARSVESSKFKGYED--RYTIAGA 244 (543)
T ss_dssp TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE-EEEEECC-SEEEEEEECCSTTCTT--TEEEEEE
T ss_pred ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcE-EEEEecC-CCcceEEeCCCcCCCC--CEEEEEE
Confidence 5899999999998887666699999999 66533 3344433 3456666654 44 4555543
No 151
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=86.76 E-value=8.2 Score=34.23 Aligned_cols=69 Identities=9% Similarity=-0.037 Sum_probs=40.4
Q ss_pred ceecC-CCCceeEEEecCCCcEEEEecC---CCeEEEEEcCCCc-eE--EEEecCCCCcEEEEEeccCCCceEEEEeC
Q 043355 73 TSDSI-PEGPILSIRFSLDTKLIAIQRS---SSEIQFWIRETSE-AF--SHRCRSDSENILGFFWTDCPLCDFVVVKN 143 (143)
Q Consensus 73 ~~fri-d~G~I~sIKFS~D~KiLAIQRs---~~sVEFvn~~~~~-~~--~q~cK~k~~~IlGF~Wt~~~~cdivlVTn 143 (143)
..+.. +++-..++.+|||+|.|++... ..+|=.++..++. +. ..............-|.... .++++||
T Consensus 263 lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~--~l~~~t~ 338 (751)
T 2xe4_A 263 CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS--HLVILTN 338 (751)
T ss_dssp EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT--EEEEEEC
T ss_pred EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC--EEEEEeC
Confidence 34443 3345678999999999999873 3455556665552 33 33333333334444455555 7777775
No 152
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=86.73 E-value=1.7 Score=36.83 Aligned_cols=33 Identities=18% Similarity=0.110 Sum_probs=27.7
Q ss_pred CceeEEEecCCCcEEEEecCCCeEEEEEcCCCce
Q 043355 80 GPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEA 113 (143)
Q Consensus 80 G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~ 113 (143)
+.+.+++||||+|.||.-+ +..|-.++..++.+
T Consensus 110 ~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~ 142 (719)
T 1z68_A 110 RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPP 142 (719)
T ss_dssp SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCC
T ss_pred cccccceECCCCCEEEEEE-CCeEEEEeCCCCCc
Confidence 5688999999999999986 56899998887754
No 153
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=86.51 E-value=2.6 Score=34.70 Aligned_cols=55 Identities=7% Similarity=0.192 Sum_probs=43.3
Q ss_pred CCceeEEEecCC-CcEEEEecCCCeEEEEEcCCCceEEEEecCCCCcEEEEEeccCC
Q 043355 79 EGPILSIRFSLD-TKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 79 ~G~I~sIKFS~D-~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
.++|.+++|+|+ +++||.--.+.+|-+++..++.. .+.....+..|.+..|....
T Consensus 149 ~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~-~~~~~~~~~~v~~v~wspdg 204 (434)
T 2oit_A 149 GGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK-VCATLPSTVAVTSVCWSPKG 204 (434)
T ss_dssp GGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE-EEEEECGGGCEEEEEECTTS
T ss_pred CCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc-eeeccCCCCceeEEEEcCCC
Confidence 459999999998 79999999999999999988733 22333345679999997654
No 154
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=85.64 E-value=6.2 Score=33.20 Aligned_cols=32 Identities=6% Similarity=0.056 Sum_probs=26.5
Q ss_pred ceeEEEecCCCcEEEEecCCCeEEEEEcCCCce
Q 043355 81 PILSIRFSLDTKLIAIQRSSSEIQFWIRETSEA 113 (143)
Q Consensus 81 ~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~ 113 (143)
.+.+++||||+|.||.-+. ..|-.++..++..
T Consensus 115 ~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~ 146 (723)
T 1xfd_A 115 KLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA 146 (723)
T ss_dssp CCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC
T ss_pred cccccEECCCCCEEEEEEC-CeEEEEECCCCce
Confidence 4889999999999998876 6788888877644
No 155
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=85.56 E-value=8.9 Score=28.14 Aligned_cols=94 Identities=7% Similarity=0.074 Sum_probs=52.5
Q ss_pred CcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCc-eecCC-CCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEE
Q 043355 38 SRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATST-SDSIP-EGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFS 115 (143)
Q Consensus 38 ~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~-~frid-~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~ 115 (143)
...+-+|+.++.+++...++--.+.+ .+++.... .+... ...+.+|.+++|++++.....+..|-.++.. +....
T Consensus 79 p~~i~~~~~~g~l~v~~~~~~~~i~~--~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~ 155 (286)
T 1q7f_A 79 PNRVAVVRNSGDIIVTERSPTHQIQI--YNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLH 155 (286)
T ss_dssp EEEEEEETTTTEEEEEECGGGCEEEE--ECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred ceEEEEEcCCCeEEEEcCCCCCEEEE--ECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEE
Confidence 45677777777777764211112222 22322222 23232 2367899999999999988888888888753 32222
Q ss_pred E-EecCCCCcEEEEEeccCC
Q 043355 116 H-RCRSDSENILGFFWTDCP 134 (143)
Q Consensus 116 q-~cK~k~~~IlGF~Wt~~~ 134 (143)
. ........+.+..+....
T Consensus 156 ~~~~~~~~~~p~~i~~~~~g 175 (286)
T 1q7f_A 156 KFGCSKHLEFPNGVVVNDKQ 175 (286)
T ss_dssp EEECTTTCSSEEEEEECSSS
T ss_pred EeCCCCccCCcEEEEECCCC
Confidence 2 111222346666665544
No 156
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=84.96 E-value=8.1 Score=32.47 Aligned_cols=18 Identities=17% Similarity=0.091 Sum_probs=15.2
Q ss_pred eeEEEecCCCcEEEEecC
Q 043355 82 ILSIRFSLDTKLIAIQRS 99 (143)
Q Consensus 82 I~sIKFS~D~KiLAIQRs 99 (143)
+.++.||||++.||.-+.
T Consensus 175 ~~~~~~SpDg~~la~~~~ 192 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAI 192 (723)
T ss_dssp SEEEEECTTSSEEEEEEE
T ss_pred cceEEECCCCCEEEEEEE
Confidence 378999999999988764
No 157
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=84.62 E-value=8.6 Score=29.80 Aligned_cols=60 Identities=12% Similarity=-0.041 Sum_probs=40.5
Q ss_pred ceeEEEecCCCcEEEEecCC----------CeEEEEEcCCCceE-EEEecCCCCcEEEEEeccCCCceEEEEeC
Q 043355 81 PILSIRFSLDTKLIAIQRSS----------SEIQFWIRETSEAF-SHRCRSDSENILGFFWTDCPLCDFVVVKN 143 (143)
Q Consensus 81 ~I~sIKFS~D~KiLAIQRs~----------~sVEFvn~~~~~~~-~q~cK~k~~~IlGF~Wt~~~~cdivlVTn 143 (143)
....|++++|++++..-+.. ..|-.++..++..- ......+ ....++.|.... +.++++|
T Consensus 173 ~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g-~~p~~la~~~d~--~~lyv~~ 243 (328)
T 3dsm_A 173 QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG-DWPSEVQLNGTR--DTLYWIN 243 (328)
T ss_dssp CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT-CCCEEEEECTTS--CEEEEES
T ss_pred CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC-CCceeEEEecCC--CEEEEEc
Confidence 44689999999999888765 78988888777432 2222212 356777777655 6666654
No 158
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=84.62 E-value=6.2 Score=33.64 Aligned_cols=35 Identities=11% Similarity=0.133 Sum_probs=28.3
Q ss_pred CCCceeEEEecCCCcEEEEec-------CCCeEEEEEcCCCc
Q 043355 78 PEGPILSIRFSLDTKLIAIQR-------SSSEIQFWIRETSE 112 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQR-------s~~sVEFvn~~~~~ 112 (143)
..+.++.|+||||+|.|++-- .+.+|-.++..++.
T Consensus 419 ~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 419 QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp SCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred CCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 345788999999999999964 25699999998763
No 159
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=84.59 E-value=6.8 Score=29.78 Aligned_cols=97 Identities=12% Similarity=0.144 Sum_probs=61.3
Q ss_pred CCCcceeEeCCCcEEEEEcCCCe-EEEEEccCCCCCCCceecCCCCceeEEEecCC--CcEEEEecCCCeEEEEEcCCCc
Q 043355 36 PESRGLHYDDGTKLLISSTSNQI-FSWKTVPFNPLATSTSDSIPEGPILSIRFSLD--TKLIAIQRSSSEIQFWIRETSE 112 (143)
Q Consensus 36 ~~~~~vFyDDank~v~avrsggv-~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D--~KiLAIQRs~~sVEFvn~~~~~ 112 (143)
..++.+=|+...++|.+--.++. .=|.+... .......++--+++|.+++||++ +++||.-=.+.+|-+++.+++.
T Consensus 14 ~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~-~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~ 92 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNG-GQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT 92 (316)
T ss_dssp CCEEEEEECGGGCEEEEEETTTEEEEEEEETT-EEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSC
T ss_pred CeEEEeeEcCCCCEEEEEeCCCeEEEEEecCC-CcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCc
Confidence 34666777765566666545553 33555211 00111233336779999999974 7889988889999999998763
Q ss_pred -eEEEEecCCCCcEEEEEeccC
Q 043355 113 -AFSHRCRSDSENILGFFWTDC 133 (143)
Q Consensus 113 -~~~q~cK~k~~~IlGF~Wt~~ 133 (143)
+..+.-+.....|.+..|...
T Consensus 93 ~~~~~~~~~h~~~V~~v~~~p~ 114 (316)
T 3bg1_A 93 WEKSHEHAGHDSSVNSVCWAPH 114 (316)
T ss_dssp CCEEEEECCCSSCCCEEEECCT
T ss_pred ceEEEEccCCCCceEEEEECCC
Confidence 333444445666878888654
No 160
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=84.25 E-value=14 Score=29.20 Aligned_cols=86 Identities=22% Similarity=0.371 Sum_probs=58.2
Q ss_pred CcceeEeCCCcEEEEE-cCCCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEE
Q 043355 38 SRGLHYDDGTKLLISS-TSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSH 116 (143)
Q Consensus 38 ~~~vFyDDank~v~av-rsggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q 116 (143)
++.+-|| + +.+++- ..|.+.=|.+ .. .+....+.-..++|.++.| |+++|+.--.+.+|.+++.+++.. .+
T Consensus 136 v~~~~~d-~-~~l~~g~~dg~i~iwd~--~~-~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~-~~ 207 (435)
T 1p22_A 136 VYCLQYD-D-QKIVSGLRDNTIKIWDK--NT-LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM-LN 207 (435)
T ss_dssp EEEEECC-S-SEEEEEESSSCEEEEES--SS-CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE-EE
T ss_pred EEEEEEC-C-CEEEEEeCCCeEEEEeC--CC-CeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE-EE
Confidence 5566664 3 344444 4455666665 21 2222334446779999999 899999999999999999988854 34
Q ss_pred EecCCCCcEEEEEec
Q 043355 117 RCRSDSENILGFFWT 131 (143)
Q Consensus 117 ~cK~k~~~IlGF~Wt 131 (143)
.-+.....|.+..|-
T Consensus 208 ~~~~h~~~v~~l~~~ 222 (435)
T 1p22_A 208 TLIHHCEAVLHLRFN 222 (435)
T ss_dssp EECCCCSCEEEEECC
T ss_pred EEcCCCCcEEEEEEc
Confidence 445566778888884
No 161
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=84.16 E-value=12 Score=28.54 Aligned_cols=92 Identities=11% Similarity=0.149 Sum_probs=55.5
Q ss_pred CCcceeEeCCCcEEEEEcC-CCeEEEEEccCCCCCCCceec---CCCCceeEEEecCCC----------cEEEEecCCCe
Q 043355 37 ESRGLHYDDGTKLLISSTS-NQIFSWKTVPFNPLATSTSDS---IPEGPILSIRFSLDT----------KLIAIQRSSSE 102 (143)
Q Consensus 37 ~~~~vFyDDank~v~avrs-ggv~gv~v~~~~p~~~~~~fr---id~G~I~sIKFS~D~----------KiLAIQRs~~s 102 (143)
.++.+-|....+.|++.-. +.+.=|.+. ........ -..+.|.+++|||++ ++||.-=.+..
T Consensus 120 ~v~~v~~sp~~~~l~s~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 195 (343)
T 2xzm_R 120 EVYSVAFSPDNRQILSAGAEREIKLWNIL----GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR 195 (343)
T ss_dssp CEEEEEECSSTTEEEEEETTSCEEEEESS----SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSE
T ss_pred cEEEEEECCCCCEEEEEcCCCEEEEEecc----CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCE
Confidence 3555556555555555433 333344441 11111111 133479999999997 68888888899
Q ss_pred EEEEEcCCCceEEEEecCCCCcEEEEEeccCC
Q 043355 103 IQFWIRETSEAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 103 VEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
|.+++.. ....+..+.....|....|..+.
T Consensus 196 i~iwd~~--~~~~~~~~~h~~~v~~~~~s~~g 225 (343)
T 2xzm_R 196 LKVWNTN--FQIRYTFKAHESNVNHLSISPNG 225 (343)
T ss_dssp EEEEETT--TEEEEEEECCSSCEEEEEECTTS
T ss_pred EEEEcCC--CceeEEEcCccccceEEEECCCC
Confidence 9999943 23334455566778888887665
No 162
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=83.60 E-value=7.7 Score=29.85 Aligned_cols=24 Identities=13% Similarity=0.329 Sum_probs=21.2
Q ss_pred CCCceeEEEecCCCcEEEEecCCC
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSS 101 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~ 101 (143)
.-|+|.+|.|++|+++++..+.++
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~ 45 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDH 45 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTC
T ss_pred ecCCceEEEECCCCCEEEEeCCCC
Confidence 567899999999999999998885
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=82.24 E-value=6.5 Score=30.58 Aligned_cols=101 Identities=9% Similarity=0.062 Sum_probs=57.5
Q ss_pred CCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCc-eecC-CCCceeEEEecCCCc--EEEEe-------c------C
Q 043355 37 ESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATST-SDSI-PEGPILSIRFSLDTK--LIAIQ-------R------S 99 (143)
Q Consensus 37 ~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~-~fri-d~G~I~sIKFS~D~K--iLAIQ-------R------s 99 (143)
....+-|+...+.|++...+.+.-|.+.. ..+.. .... ..|.+..+.||||++ ++++- . .
T Consensus 41 ~~~~~a~spdg~~l~~~~~~~v~~~~~~~---~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMKKWSSFAVKS---PTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBTEEEEEEEEE---TTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCcEEEECCCCCEEEEEccceEEEEEECC---CCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence 35567788777778777555555555521 11111 1112 235556799999999 45443 1 4
Q ss_pred CCeEEEEEcC-CCceEE--EEe-cCCCCcEEEEEeccCCCceEEEEe
Q 043355 100 SSEIQFWIRE-TSEAFS--HRC-RSDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 100 ~~sVEFvn~~-~~~~~~--q~c-K~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
+.++..+... ++..-. +.. ......+.+..|.... +.++++
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG--~~l~~~ 162 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE--TYLYSA 162 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS--SEEEEE
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC--CEEEEE
Confidence 6678888875 443221 111 1234567888887766 666665
No 164
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=82.01 E-value=6.6 Score=33.80 Aligned_cols=52 Identities=13% Similarity=0.129 Sum_probs=35.2
Q ss_pred eEEEecCCCcEEEEecCCCe-------------EEEEEcCCCce---EEEEecCCCCcEEEEEeccCC
Q 043355 83 LSIRFSLDTKLIAIQRSSSE-------------IQFWIRETSEA---FSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 83 ~sIKFS~D~KiLAIQRs~~s-------------VEFvn~~~~~~---~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
.++.||||++.|+..+.... |-.++..++.. ....-+.....+.+..|....
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG 238 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG 238 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC
Confidence 68899999999998887554 88888877742 121222223457778887765
No 165
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=81.90 E-value=3.7 Score=37.17 Aligned_cols=59 Identities=12% Similarity=0.063 Sum_probs=42.0
Q ss_pred CCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEEEecCC---CCcEEEEEeccCCCceEEEE
Q 043355 79 EGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRSD---SENILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 79 ~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k---~~~IlGF~Wt~~~~cdivlV 141 (143)
+..|.+++||||++.||+-=.+.+|-.++.++ ...... ... +..+..+.|--.. +++.+
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG--~~LAs 146 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIE--SSIVV 146 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSS--SCEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCC--CEEEE
Confidence 45799999999999999999999999999654 111111 111 2358899997665 55543
No 166
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=81.77 E-value=6.6 Score=29.02 Aligned_cols=37 Identities=8% Similarity=0.162 Sum_probs=29.3
Q ss_pred CceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEE
Q 043355 80 GPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSH 116 (143)
Q Consensus 80 G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q 116 (143)
+.+.++.||||++.|++--...+|.+++..++....+
T Consensus 295 ~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~ 331 (349)
T 1jmx_B 295 HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKN 331 (349)
T ss_dssp SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEE
T ss_pred CCccceEECCCCCEEEEecCCCeEEEEeccccceeee
Confidence 3577999999998888866678999999988754433
No 167
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=81.73 E-value=5.5 Score=31.49 Aligned_cols=55 Identities=9% Similarity=0.044 Sum_probs=43.1
Q ss_pred CCceeEEEecC--------CCcEEEEecCCCeEEEEEcCCCceEEEEecCCCCcEEEEEeccCC
Q 043355 79 EGPILSIRFSL--------DTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 79 ~G~I~sIKFS~--------D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
.++|.++.||| |+++||--=.+++|-+|+..++.+... .......+.+..|--..
T Consensus 136 ~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~-~~~~~~~v~~v~~~p~~ 198 (393)
T 4gq1_A 136 HNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA-GYPLSSPGISVQFRPSN 198 (393)
T ss_dssp SSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE-EEECSSCEEEEEEETTE
T ss_pred CCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee-ecCCCCCcEEEEECCCC
Confidence 56999999998 999999999999999999977644333 33455678888886443
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=79.27 E-value=3.4 Score=31.29 Aligned_cols=29 Identities=17% Similarity=-0.028 Sum_probs=24.5
Q ss_pred EEEecCCCcEEEEecCCCeEEEEEcCCCc
Q 043355 84 SIRFSLDTKLIAIQRSSSEIQFWIRETSE 112 (143)
Q Consensus 84 sIKFS~D~KiLAIQRs~~sVEFvn~~~~~ 112 (143)
.+.||||++.||..+....|-.++..++.
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLE 113 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCC
Confidence 38899999999998888888888887763
No 169
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=78.12 E-value=31 Score=30.04 Aligned_cols=83 Identities=7% Similarity=0.023 Sum_probs=47.5
Q ss_pred EeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCC-ceeEEEecCCCcEEEEecCCCeEEEEEcC--CCceEEEEec
Q 043355 43 YDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEG-PILSIRFSLDTKLIAIQRSSSEIQFWIRE--TSEAFSHRCR 119 (143)
Q Consensus 43 yDDank~v~avrsggv~gv~v~~~~p~~~~~~frid~G-~I~sIKFS~D~KiLAIQRs~~sVEFvn~~--~~~~~~q~cK 119 (143)
+|..|..+++-+.++. |.+ .+++.....-++.-| .+..+.||||+|.|-+-=....|..++.. ++.. ..+.+
T Consensus 163 ~d~~~~~~V~~~~~~~--V~v--iD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~-v~~i~ 237 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQ--IAL--IDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-VAEIK 237 (567)
T ss_dssp CCGGGEEEEEETTTTE--EEE--EETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE-EEEEE
T ss_pred cCCCceEEEEeCCCCe--EEE--EECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE-eEEEe
Confidence 5544444444455552 222 223333344455555 67899999999987665445688888884 5532 34455
Q ss_pred CCCCcEEEEEec
Q 043355 120 SDSENILGFFWT 131 (143)
Q Consensus 120 ~k~~~IlGF~Wt 131 (143)
.+.. -.++.+.
T Consensus 238 ~G~~-P~~ia~s 248 (567)
T 1qks_A 238 IGSE-ARSIETS 248 (567)
T ss_dssp CCSE-EEEEEEC
T ss_pred cCCC-CceeEEc
Confidence 4433 4466665
No 170
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=76.64 E-value=9.9 Score=32.16 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=14.8
Q ss_pred eEEEecCCCcEEEEecC
Q 043355 83 LSIRFSLDTKLIAIQRS 99 (143)
Q Consensus 83 ~sIKFS~D~KiLAIQRs 99 (143)
.++.||||+|.||..+.
T Consensus 172 ~~~~wSPDG~~la~~~~ 188 (719)
T 1z68_A 172 YALWWSPNGKFLAYAEF 188 (719)
T ss_dssp CCEEECTTSSEEEEEEE
T ss_pred ccEEECCCCCEEEEEEE
Confidence 48999999999998764
No 171
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=76.53 E-value=7.7 Score=33.72 Aligned_cols=52 Identities=6% Similarity=-0.037 Sum_probs=32.3
Q ss_pred eeEEEecCCCcEEEEecCCCe--------------EEEEEcCCCceEEEEecCC---CCcEEEEEeccCC
Q 043355 82 ILSIRFSLDTKLIAIQRSSSE--------------IQFWIRETSEAFSHRCRSD---SENILGFFWTDCP 134 (143)
Q Consensus 82 I~sIKFS~D~KiLAIQRs~~s--------------VEFvn~~~~~~~~q~cK~k---~~~IlGF~Wt~~~ 134 (143)
+.++.|||| +.|+..+.... |-.++..++..-.+..... ...+.+..|....
T Consensus 211 ~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG 279 (741)
T 1yr2_A 211 FSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDG 279 (741)
T ss_dssp SCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS
T ss_pred eccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCC
Confidence 357889999 99999886443 6677776664211212211 2247788887665
No 172
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=76.51 E-value=6.9 Score=29.78 Aligned_cols=61 Identities=11% Similarity=0.076 Sum_probs=35.2
Q ss_pred CceeEEEecC-CCcEEEEecCC------CeEEEEEcCCCceEEEEecCC-CCcEEEEEeccCCCceEEEEe
Q 043355 80 GPILSIRFSL-DTKLIAIQRSS------SEIQFWIRETSEAFSHRCRSD-SENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 80 G~I~sIKFS~-D~KiLAIQRs~------~sVEFvn~~~~~~~~q~cK~k-~~~IlGF~Wt~~~~cdivlVT 142 (143)
+.+..+.||| |++.||..... ..|-.++..++... +..... ...+....|.... -.|++++
T Consensus 188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg-~~l~~~~ 256 (388)
T 3pe7_A 188 QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDG-SALVYVS 256 (388)
T ss_dssp SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTS-SCEEEEE
T ss_pred ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCC-CEEEEEe
Confidence 3567899999 99988876653 36666666554322 212212 1346677776543 1355543
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=76.01 E-value=20 Score=26.14 Aligned_cols=55 Identities=2% Similarity=0.083 Sum_probs=37.7
Q ss_pred CceeEEEecCCCcEEEEecCCC-eEEEEEcCCCceEEEEecCCCCcEEEEEeccCC
Q 043355 80 GPILSIRFSLDTKLIAIQRSSS-EIQFWIRETSEAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 80 G~I~sIKFS~D~KiLAIQRs~~-sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
..+.+|.|++|+++++..+.+. .|..++.................+.++.|....
T Consensus 207 ~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g 262 (286)
T 1q7f_A 207 NYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDG 262 (286)
T ss_dssp CSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTT
T ss_pred CCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCC
Confidence 3678999999999999998886 999888533222222333333457777777655
No 174
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=75.80 E-value=11 Score=31.74 Aligned_cols=77 Identities=16% Similarity=0.088 Sum_probs=51.1
Q ss_pred CCCCcceeEeCCCcEEEEEcC--------CCeEEEEEccCCCCCCCceecCCCC-ceeEEEecCCCc--EEEEecCCCeE
Q 043355 35 IPESRGLHYDDGTKLLISSTS--------NQIFSWKTVPFNPLATSTSDSIPEG-PILSIRFSLDTK--LIAIQRSSSEI 103 (143)
Q Consensus 35 ~~~~~~vFyDDank~v~avrs--------ggv~gv~v~~~~p~~~~~~frid~G-~I~sIKFS~D~K--iLAIQRs~~sV 103 (143)
+.+...+=+|+..+++++... +....|.| .+.......-++.-| ++.+|.||+|+| +++..|.+.+|
T Consensus 279 p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~v--iD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~V 356 (386)
T 3sjl_D 279 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV--LDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTL 356 (386)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE--EETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEE
T ss_pred CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEE--EECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeE
Confidence 344555777888888888632 22344444 334333333445444 788999999997 56778999999
Q ss_pred EEEEcCCCce
Q 043355 104 QFWIRETSEA 113 (143)
Q Consensus 104 EFvn~~~~~~ 113 (143)
-.++-.++..
T Consensus 357 sViD~~t~k~ 366 (386)
T 3sjl_D 357 YIHDAESGEE 366 (386)
T ss_dssp EEEETTTCCE
T ss_pred EEEECCCCcE
Confidence 9999887743
No 175
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=75.08 E-value=16 Score=31.72 Aligned_cols=35 Identities=11% Similarity=-0.002 Sum_probs=28.7
Q ss_pred CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCce
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEA 113 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~ 113 (143)
..+.+.+.+||||+|.||--+ +..|-.++..++.+
T Consensus 110 ~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~ 144 (740)
T 4a5s_A 110 IPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPS 144 (740)
T ss_dssp CCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCC
T ss_pred CCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCce
Confidence 456899999999999999885 46888888877754
No 176
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=74.53 E-value=9.3 Score=33.16 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=37.3
Q ss_pred eEEEecCCCcEEEEecCCC-------------eEEEEEcCCCceEEEEecCCC----CcEEEEEeccCCCceEEEEe
Q 043355 83 LSIRFSLDTKLIAIQRSSS-------------EIQFWIRETSEAFSHRCRSDS----ENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 83 ~sIKFS~D~KiLAIQRs~~-------------sVEFvn~~~~~~~~q~cK~k~----~~IlGF~Wt~~~~cdivlVT 142 (143)
.++.|| |+|-|+..+... .|-.+...++..-........ ...++..|+... +.++++
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg--~~l~~~ 251 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDD--RFLLIS 251 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTS--CEEEEE
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCC--CEEEEE
Confidence 467899 999999998774 377777776643222222222 247788888776 666553
No 177
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=73.81 E-value=30 Score=27.10 Aligned_cols=99 Identities=14% Similarity=0.256 Sum_probs=61.1
Q ss_pred cCCCCcceeEeCCCcEEEEEcCCCeEE-EEEccCCCCCCCc-eecCCCCceeEEEecCCC-cEEEEe--cCCCeEEEEEc
Q 043355 34 SIPESRGLHYDDGTKLLISSTSNQIFS-WKTVPFNPLATST-SDSIPEGPILSIRFSLDT-KLIAIQ--RSSSEIQFWIR 108 (143)
Q Consensus 34 ~~~~~~~vFyDDank~v~avrsggv~g-v~v~~~~p~~~~~-~frid~G~I~sIKFS~D~-KiLAIQ--Rs~~sVEFvn~ 108 (143)
+...+..+.+....+.+.+...++... |..........+. ......++|.++.|+|++ .+||+- -.+..|-+++.
T Consensus 229 h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~ 308 (420)
T 4gga_A 229 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308 (420)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEET
T ss_pred cccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeC
Confidence 345567777877777777776655443 4442211111222 223377799999999976 677663 35689999999
Q ss_pred CCCceEEEEecCCCCcEEEEEeccCC
Q 043355 109 ETSEAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 109 ~~~~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
.++........ ...+....|....
T Consensus 309 ~t~~~~~~~~~--~~~v~~~~~~~~~ 332 (420)
T 4gga_A 309 CSGACLSAVDA--HSQVCSILWSPHY 332 (420)
T ss_dssp TTTEEEEEEEC--SSCEEEEEEETTT
T ss_pred Cccccceeecc--ccceeeeeecCCC
Confidence 88855444332 2446666666553
No 178
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=68.44 E-value=32 Score=29.32 Aligned_cols=71 Identities=13% Similarity=0.154 Sum_probs=47.8
Q ss_pred CcceeEeCCCcEEEEEcCCCeE-EEEEccCCCCCCCceecCCCCceeEE--EecCCC-cEEEEecCCCeEEEEEcCCC
Q 043355 38 SRGLHYDDGTKLLISSTSNQIF-SWKTVPFNPLATSTSDSIPEGPILSI--RFSLDT-KLIAIQRSSSEIQFWIRETS 111 (143)
Q Consensus 38 ~~~vFyDDank~v~avrsggv~-gv~v~~~~p~~~~~~frid~G~I~sI--KFS~D~-KiLAIQRs~~sVEFvn~~~~ 111 (143)
++.+=|.+.+ .|++-..+|.. =|.+ .++..+...+..-.++|.+| .||+|+ ++||.-=.+.+|-+++..++
T Consensus 269 v~sv~~s~~~-~lasgs~DgtV~lWD~--~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~ 343 (524)
T 2j04_B 269 ITTFDFLSPT-TVVCGFKNGFVAEFDL--TDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI 343 (524)
T ss_dssp EEEEEESSSS-EEEEEETTSEEEEEET--TBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH
T ss_pred EEEEEecCCC-eEEEEeCCCEEEEEEC--CCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC
Confidence 5566665443 55554455543 3555 22222333456677899999 789998 99999999999999998654
No 179
>3mep_A Uncharacterized protein ECA2234; all beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Pectobacterium atrosepticum}
Probab=67.59 E-value=6.2 Score=30.04 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=31.1
Q ss_pred EeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecC-CCCceeEEEecCCCc
Q 043355 43 YDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSI-PEGPILSIRFSLDTK 92 (143)
Q Consensus 43 yDDank~v~avrsggv~gv~v~~~~p~~~~~~fri-d~G~I~sIKFS~D~K 92 (143)
|+|+...|-+|..+|...|...+.......+-+|+ -+|....+.||.|++
T Consensus 89 ~~~g~~~l~~V~t~g~sd~~~~~~~~~~~~v~LRv~~~~~~~~~~yS~DG~ 139 (198)
T 3mep_A 89 FNDGQPSIGCVVTNNNSDWSTGLFPGNPGDFWMRVTSKSDVIRIQYSIDGK 139 (198)
T ss_dssp ECSSSEEEEEEEEESSEEEEEEECCSCTTSEEEEEEEETTEEEEEEESSSS
T ss_pred EeCCeEEEEEEEcCCccccccccccCCCCeEEEEEEEECCEEEEEEECCCC
Confidence 44544445444334556666544322346688887 667778999999985
No 180
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=67.50 E-value=39 Score=25.78 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=28.3
Q ss_pred eeEEEecCC-CcEEEEecCCCeEEEEEcCCCce
Q 043355 82 ILSIRFSLD-TKLIAIQRSSSEIQFWIRETSEA 113 (143)
Q Consensus 82 I~sIKFS~D-~KiLAIQRs~~sVEFvn~~~~~~ 113 (143)
+.+|.|+|| ++++..-+.+..|..++.++|..
T Consensus 198 p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~ 230 (329)
T 3fvz_A 198 PHSLALVPHLDQLCVADRENGRIQCFKTDTKEF 230 (329)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCE
T ss_pred CcEEEEECCCCEEEEEECCCCEEEEEECCCCcE
Confidence 789999999 89999999999999999886643
No 181
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=67.03 E-value=41 Score=28.17 Aligned_cols=95 Identities=18% Similarity=0.220 Sum_probs=64.0
Q ss_pred CCC-ceecCCCCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEE
Q 043355 28 YPP-LRCSIPESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFW 106 (143)
Q Consensus 28 ~~p-lR~~~~~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFv 106 (143)
+.| +....|.++.|.| |.+-+..+ ..+++.-|.+... ... .....-+-+|.+||+.+.+ +|+-.++.+|-.+
T Consensus 79 ~~~~~~~~lp~V~~l~f-d~~~L~v~-~~~~l~v~dv~sl--~~~-~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~ 151 (388)
T 1xip_A 79 LTFKWEKEIPDVIFVCF-HGDQVLVS-TRNALYSLDLEEL--SEF-RTVTSFEKPVFQLKNVNNT--LVILNSVNDLSAL 151 (388)
T ss_dssp CCCSEEEECTTEEEEEE-ETTEEEEE-ESSEEEEEESSST--TCE-EEEEECSSCEEEEEECSSE--EEEEETTSEEEEE
T ss_pred ccceEEeeCCCeeEEEE-CCCEEEEE-cCCcEEEEEchhh--hcc-CccceeecceeeEEecCCC--EEEEECCCCEEEE
Confidence 567 5778888999999 55555555 6777777777333 211 1222212358899999765 8888999999999
Q ss_pred EcCCCceEEEEecCCCCcEEEEEeccCC
Q 043355 107 IRETSEAFSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 107 n~~~~~~~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
+..++..- + ....+.++.|....
T Consensus 152 dl~~~~~~-~----~~~~Vs~v~WSpkG 174 (388)
T 1xip_A 152 DLRTKSTK-Q----LAQNVTSFDVTNSQ 174 (388)
T ss_dssp ETTTCCEE-E----EEESEEEEEECSSE
T ss_pred EccCCccc-c----ccCCceEEEEcCCc
Confidence 99776432 1 23568899997654
No 182
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=65.57 E-value=27 Score=28.21 Aligned_cols=74 Identities=15% Similarity=0.105 Sum_probs=44.4
Q ss_pred eeEeCCCcEEEEEcCCC--------eEEEEEccCCCCCCCceecCCCC-ceeEEEecCCCc-EEEEec-CCCeEEEEEcC
Q 043355 41 LHYDDGTKLLISSTSNQ--------IFSWKTVPFNPLATSTSDSIPEG-PILSIRFSLDTK-LIAIQR-SSSEIQFWIRE 109 (143)
Q Consensus 41 vFyDDank~v~avrsgg--------v~gv~v~~~~p~~~~~~frid~G-~I~sIKFS~D~K-iLAIQR-s~~sVEFvn~~ 109 (143)
+.++...+++++.-.++ .-.|.| .+.......-++.-| ...+|.||||+| +|.+-+ .+.+|-.++..
T Consensus 272 ~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~V--ID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 272 VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS--VTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred EEECCCCCEEEEEeccCCcccccCCCCeEEE--EECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 56676667777753221 112333 223222222334323 567999999999 666655 58999999998
Q ss_pred CCceEEE
Q 043355 110 TSEAFSH 116 (143)
Q Consensus 110 ~~~~~~q 116 (143)
++..-..
T Consensus 350 t~~vv~~ 356 (373)
T 2mad_H 350 AGDQDQS 356 (373)
T ss_pred CCCEEee
Confidence 8866544
No 183
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=63.88 E-value=16 Score=28.92 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=25.7
Q ss_pred eeEEEecCCCcEEEEecCCCeEEEEEcCCC
Q 043355 82 ILSIRFSLDTKLIAIQRSSSEIQFWIRETS 111 (143)
Q Consensus 82 I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~ 111 (143)
+.+|.||||+|.|.+--. .+|-.++..++
T Consensus 307 p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 307 ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 889999999998888765 89999998887
No 184
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=63.63 E-value=41 Score=27.96 Aligned_cols=32 Identities=0% Similarity=-0.303 Sum_probs=25.3
Q ss_pred CCceeEEEecCCCcEEEEecCC----------CeEEEEEcCC
Q 043355 79 EGPILSIRFSLDTKLIAIQRSS----------SEIQFWIRET 110 (143)
Q Consensus 79 ~G~I~sIKFS~D~KiLAIQRs~----------~sVEFvn~~~ 110 (143)
.+.+.++.||||+|.||.-+.. ..|-.++..+
T Consensus 129 ~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 170 (662)
T 3azo_A 129 GLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDG 170 (662)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred CccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCC
Confidence 3478999999999999887754 4677778766
No 185
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=62.99 E-value=30 Score=25.96 Aligned_cols=33 Identities=18% Similarity=-0.082 Sum_probs=23.2
Q ss_pred ceeEEEecCCCcEEEEecC---C--CeEEEEEcCCCce
Q 043355 81 PILSIRFSLDTKLIAIQRS---S--SEIQFWIRETSEA 113 (143)
Q Consensus 81 ~I~sIKFS~D~KiLAIQRs---~--~sVEFvn~~~~~~ 113 (143)
.+.++.||||++.|+.-.. . ..|-.++..++..
T Consensus 239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (396)
T 3c5m_A 239 SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN 276 (396)
T ss_dssp EEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred cccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence 5788999999987665422 2 3488888777643
No 186
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=62.74 E-value=54 Score=25.71 Aligned_cols=88 Identities=13% Similarity=0.186 Sum_probs=56.3
Q ss_pred CCCcceeEeCCCcEEEEEcC-CCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceE
Q 043355 36 PESRGLHYDDGTKLLISSTS-NQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAF 114 (143)
Q Consensus 36 ~~~~~vFyDDank~v~avrs-ggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~ 114 (143)
..++.+-|| . +.|++-.. |.+.-|.+ .. .+....+.-..++|.++.|++ +.|+.--.+..|-+++..++...
T Consensus 174 ~~v~~l~~~-~-~~l~sg~~dg~i~vwd~--~~-~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~ 246 (435)
T 1p22_A 174 GSVLCLQYD-E-RVIITGSSDSTVRVWDV--NT-GEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDI 246 (435)
T ss_dssp SCEEEEECC-S-SEEEEEETTSCEEEEES--SS-CCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCC
T ss_pred CcEEEEEEC-C-CEEEEEcCCCeEEEEEC--CC-CcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCc
Confidence 346666673 2 34444433 44555665 21 122233334677999999984 47788888899999999877443
Q ss_pred --EEEecCCCCcEEEEEe
Q 043355 115 --SHRCRSDSENILGFFW 130 (143)
Q Consensus 115 --~q~cK~k~~~IlGF~W 130 (143)
.+........|..+.|
T Consensus 247 ~~~~~~~~~~~~v~~~~~ 264 (435)
T 1p22_A 247 TLRRVLVGHRAAVNVVDF 264 (435)
T ss_dssp EEEEEECCCSSCEEEEEE
T ss_pred eeeeEecCCCCcEEEEEe
Confidence 3455566778888888
No 187
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=61.97 E-value=46 Score=24.71 Aligned_cols=58 Identities=16% Similarity=0.050 Sum_probs=40.3
Q ss_pred ceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEEEecCCCCcEEEEEeccCCCceEEEE
Q 043355 81 PILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 81 ~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~~cdivlV 141 (143)
.+.++.|++|++++.+-.....|-.++.+++.... ........+.++.|.... .+++.
T Consensus 46 ~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~i~~~~dg--~l~v~ 103 (333)
T 2dg1_A 46 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR-PFVSHKANPAAIKIHKDG--RLFVC 103 (333)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-EEECSSSSEEEEEECTTS--CEEEE
T ss_pred cccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE-EeeCCCCCcceEEECCCC--cEEEE
Confidence 56799999999988887777889888887764322 222234568888887665 55443
No 188
>3o12_A Uncharacterized protein YJL217W; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.50A {Saccharomyces cerevisiae}
Probab=61.51 E-value=8.7 Score=30.06 Aligned_cols=50 Identities=28% Similarity=0.315 Sum_probs=31.0
Q ss_pred EeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecC-CCCceeEEEecCCCc
Q 043355 43 YDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSI-PEGPILSIRFSLDTK 92 (143)
Q Consensus 43 yDDank~v~avrsggv~gv~v~~~~p~~~~~~fri-d~G~I~sIKFS~D~K 92 (143)
|+|....|.+|..+|...|...+.......+-+|+ -+|....+.||.|++
T Consensus 118 ~~d~~~~l~~Vvt~g~sdw~~~~v~~~~~~v~LRv~~~~~~~~f~YS~DG~ 168 (221)
T 3o12_A 118 ISDGHAMLSSVLTNGKSDWSTAVYGGNARDFWLRVTVEKGVLRIQVSSDKK 168 (221)
T ss_dssp EETTEEEEEEEEEESSEEEEEEECCSCTTSEEEEEEEETTEEEEEEESSSS
T ss_pred EECCeEEEEEEEeCCccccccccccCCCCcEEEEEEEECCEEEEEEECCCC
Confidence 45554455444334556665543322445678887 566777999999985
No 189
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=59.88 E-value=66 Score=25.83 Aligned_cols=58 Identities=5% Similarity=-0.163 Sum_probs=35.7
Q ss_pred EEEecCCCcEEEEec----------CCCeEEEEEcCCCceEE-EEec-CC----CCcEEEEEeccCCCceEEEEeC
Q 043355 84 SIRFSLDTKLIAIQR----------SSSEIQFWIRETSEAFS-HRCR-SD----SENILGFFWTDCPLCDFVVVKN 143 (143)
Q Consensus 84 sIKFS~D~KiLAIQR----------s~~sVEFvn~~~~~~~~-q~cK-~k----~~~IlGF~Wt~~~~cdivlVTn 143 (143)
.|.||||+|.|.+-- .+..|..++..+...-. ..+. .+ ...--++.|.... ..++|+|
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG--~~l~v~n 143 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN--ADLLFFQ 143 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCC--CEEEEEe
Confidence 999999999988863 35678888887653322 2222 01 1123366676665 5666654
No 190
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=59.64 E-value=61 Score=25.33 Aligned_cols=87 Identities=11% Similarity=0.236 Sum_probs=55.1
Q ss_pred CCCcceeEeCCCcEEEEEcCCC-eEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceE
Q 043355 36 PESRGLHYDDGTKLLISSTSNQ-IFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAF 114 (143)
Q Consensus 36 ~~~~~vFyDDank~v~avrsgg-v~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~ 114 (143)
..++.+-||+ +.+++...+| +.-|.+ . ..+....+.-..++|.++.| |+++|+.--.+..|.+++..++...
T Consensus 200 ~~v~~~~~~~--~~l~s~s~dg~i~~wd~--~-~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~ 272 (445)
T 2ovr_B 200 STVRCMHLHE--KRVVSGSRDATLRVWDI--E-TGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCL 272 (445)
T ss_dssp SCEEEEEEET--TEEEEEETTSEEEEEES--S-SCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEE
T ss_pred CcEEEEEecC--CEEEEEeCCCEEEEEEC--C-CCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEe
Confidence 3466677763 3455544444 444554 1 11222333346779999998 7888888888999999998776433
Q ss_pred EEEecCCCCcEEEEEe
Q 043355 115 SHRCRSDSENILGFFW 130 (143)
Q Consensus 115 ~q~cK~k~~~IlGF~W 130 (143)
...+.....|..+.|
T Consensus 273 -~~~~~~~~~v~~~~~ 287 (445)
T 2ovr_B 273 -HTLQGHTNRVYSLQF 287 (445)
T ss_dssp -EEECCCSSCEEEEEE
T ss_pred -EEecCCCCceEEEEE
Confidence 333455667888888
No 191
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=56.97 E-value=52 Score=23.68 Aligned_cols=56 Identities=9% Similarity=0.189 Sum_probs=42.9
Q ss_pred CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCC---ceEEEEecCCCCcEEEEEeccC
Q 043355 78 PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETS---EAFSHRCRSDSENILGFFWTDC 133 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~---~~~~q~cK~k~~~IlGF~Wt~~ 133 (143)
..+.+..+.|++++++|+.--.+.+|.+++..++ .............|....|...
T Consensus 149 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 207 (318)
T 4ggc_A 149 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 207 (318)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTT
T ss_pred ccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCC
Confidence 5678999999999999999999999999999765 2333444445566777777654
No 192
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=56.33 E-value=58 Score=26.78 Aligned_cols=72 Identities=11% Similarity=0.012 Sum_probs=44.3
Q ss_pred eeEeCCCcEEEEEcC-C-C-----eEEEEEccCCCCCCCceecCCCC-ceeEEEecCCCc-EEEEec-CCCeEEEEEcCC
Q 043355 41 LHYDDGTKLLISSTS-N-Q-----IFSWKTVPFNPLATSTSDSIPEG-PILSIRFSLDTK-LIAIQR-SSSEIQFWIRET 110 (143)
Q Consensus 41 vFyDDank~v~avrs-g-g-----v~gv~v~~~~p~~~~~~frid~G-~I~sIKFS~D~K-iLAIQR-s~~sVEFvn~~~ 110 (143)
+-|+...+++++.-. . + .-++.| .+.......-+|.-| ....|.||+|+| ++..-+ .+.+|-.++..+
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~V--iD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSS--VTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEE--EESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEE--EECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence 457777777776422 2 2 112223 234333344456444 577999999997 555566 689999999988
Q ss_pred CceE
Q 043355 111 SEAF 114 (143)
Q Consensus 111 ~~~~ 114 (143)
+...
T Consensus 347 ~kvv 350 (368)
T 1mda_H 347 DQDQ 350 (368)
T ss_dssp CEEE
T ss_pred CcEE
Confidence 7443
No 193
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=53.19 E-value=69 Score=23.99 Aligned_cols=65 Identities=11% Similarity=0.113 Sum_probs=40.3
Q ss_pred ceeEeCCCc-EEEEEc-CCCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcC
Q 043355 40 GLHYDDGTK-LLISST-SNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRE 109 (143)
Q Consensus 40 ~vFyDDank-~v~avr-sggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~ 109 (143)
+.-||...+ .+++=. .+++.-|. +......+....+.+.++.+++|+++++.......|..++..
T Consensus 49 gp~~~~~g~~l~~~d~~~~~i~~~~-----~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 49 GPAWWEAQRTLVWSDLVGRRVLGWR-----EDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD 115 (305)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEE-----TTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEe-----CCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence 455665544 444433 34444442 222333444456678899999999999988877777777654
No 194
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=51.82 E-value=14 Score=31.29 Aligned_cols=28 Identities=7% Similarity=0.031 Sum_probs=22.9
Q ss_pred ceeEEEecCCCcEEEEecCCCeEEEEEc
Q 043355 81 PILSIRFSLDTKLIAIQRSSSEIQFWIR 108 (143)
Q Consensus 81 ~I~sIKFS~D~KiLAIQRs~~sVEFvn~ 108 (143)
.+.+++||||+++||---.+.+|-.++.
T Consensus 328 vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 328 HWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 3446999999999998888888887763
No 195
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=50.64 E-value=61 Score=27.43 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=49.2
Q ss_pred CcceeEeCCCcEEEEEcCC--------CeEEEEEccCCCCCCCceecCCCC-ceeEEEecCCCc-EEEEec-CCCeEEEE
Q 043355 38 SRGLHYDDGTKLLISSTSN--------QIFSWKTVPFNPLATSTSDSIPEG-PILSIRFSLDTK-LIAIQR-SSSEIQFW 106 (143)
Q Consensus 38 ~~~vFyDDank~v~avrsg--------gv~gv~v~~~~p~~~~~~frid~G-~I~sIKFS~D~K-iLAIQR-s~~sVEFv 106 (143)
...+-||...+++++.-.+ +.-.|.| .+.......-++.=| ...+|.||||+| .|.+=+ .+.+|-.+
T Consensus 321 ~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsV--ID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVI 398 (426)
T 3c75_H 321 WQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVV--LNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIY 398 (426)
T ss_dssp SSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEE--EETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred ceeeEEcCCCCEEEEEecccccccccCCCCEEEE--EECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEE
Confidence 3346778777777775321 2334555 334333344445434 477999999998 666655 69999999
Q ss_pred EcCCCceEEE
Q 043355 107 IRETSEAFSH 116 (143)
Q Consensus 107 n~~~~~~~~q 116 (143)
+..++.+-..
T Consensus 399 D~~t~kvv~t 408 (426)
T 3c75_H 399 DAATGEELRS 408 (426)
T ss_dssp ETTTCCEEEE
T ss_pred ECCCCCEEEE
Confidence 9988866544
No 196
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.83 E-value=32 Score=23.92 Aligned_cols=39 Identities=3% Similarity=0.075 Sum_probs=31.3
Q ss_pred eecCCCCceeEEEecCC-----CcEEEEecCCCeEEEEEcCCCce
Q 043355 74 SDSIPEGPILSIRFSLD-----TKLIAIQRSSSEIQFWIRETSEA 113 (143)
Q Consensus 74 ~frid~G~I~sIKFS~D-----~KiLAIQRs~~sVEFvn~~~~~~ 113 (143)
......|.+.++|||-| +||+.+++.++ +|.+...-|++
T Consensus 19 ~~~~k~g~~vaak~~d~n~WyRakV~~v~~~~~-veVl~~DyGn~ 62 (85)
T 2eqk_A 19 PVKWENDMHCAVKIQDKNQWRRGQIIRMVTDTL-VEVLLYDVGVE 62 (85)
T ss_dssp CCCCCSSCEEEEECSSSCCEEEEEEEEECSSSE-EEEECTTTCCE
T ss_pred ccCccCCCEEEEEeCCCCeEEEEEEEEecCCCe-EEEEEEccCCE
Confidence 45557899999999977 48999999888 88877766643
No 197
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=49.58 E-value=30 Score=28.05 Aligned_cols=57 Identities=18% Similarity=0.192 Sum_probs=38.5
Q ss_pred cceeEeCCCcEEEEEcCCCeEEEEEccCCCC--CCCceec---C-CCC--ceeEEEecCCCcEEEEecCCC
Q 043355 39 RGLHYDDGTKLLISSTSNQIFSWKTVPFNPL--ATSTSDS---I-PEG--PILSIRFSLDTKLIAIQRSSS 101 (143)
Q Consensus 39 ~~vFyDDank~v~avrsggv~gv~v~~~~p~--~~~~~fr---i-d~G--~I~sIKFS~D~KiLAIQRs~~ 101 (143)
..+||| .|+.|.++ ++|-.. ++ ..|. ...+--. + +.| .+..|-|.||+.|-||. ..+
T Consensus 91 ~a~~fD-~~G~LYav-~dG~iy-r~--~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~ 155 (236)
T 1tl2_A 91 QFLFFD-PNGYLYAV-SKDKLY-KA--SPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQ 155 (236)
T ss_dssp SEEEEC-TTSCEEEE-ETTEEE-EE--SCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTE
T ss_pred eEEEEC-CCCCEEEe-CCCEEE-Ee--CCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCc
Confidence 568898 89999999 555332 44 3332 2222111 3 445 88999999999999999 555
No 198
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=49.43 E-value=87 Score=26.99 Aligned_cols=16 Identities=13% Similarity=0.266 Sum_probs=13.4
Q ss_pred eEEEecCCCcEEEEec
Q 043355 83 LSIRFSLDTKLIAIQR 98 (143)
Q Consensus 83 ~sIKFS~D~KiLAIQR 98 (143)
.++.||||+|.||.-+
T Consensus 174 ~~~~wSpDg~~la~~~ 189 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQ 189 (740)
T ss_dssp BCEEECTTSSEEEEEE
T ss_pred cceEECCCCCEEEEEE
Confidence 3589999999998765
No 199
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=47.49 E-value=88 Score=26.14 Aligned_cols=57 Identities=14% Similarity=0.091 Sum_probs=39.2
Q ss_pred ceeEEEecCCCcEEEEecCCCeEEEEEcCCCceE---EEEe----c---CCCCcEEEEEeccCCCceEEEE
Q 043355 81 PILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAF---SHRC----R---SDSENILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 81 ~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~---~q~c----K---~k~~~IlGF~Wt~~~~cdivlV 141 (143)
.|.+|.+||+++ ++--.+..+..+..++.... +-.| . ....++++..|..+. +++++
T Consensus 164 ~Vs~v~WSpkG~--~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~--~flv~ 230 (388)
T 1xip_A 164 NVTSFDVTNSQL--AVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ--DFLAV 230 (388)
T ss_dssp SEEEEEECSSEE--EEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS--EEEEE
T ss_pred CceEEEEcCCce--EEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC--eEEEE
Confidence 799999999994 44455677777755444422 2222 2 146789999999988 77764
No 200
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=46.44 E-value=1e+02 Score=24.96 Aligned_cols=33 Identities=12% Similarity=0.194 Sum_probs=28.9
Q ss_pred ceeEEEecCCCcEEEEecCCCeEEEEEcCCCce
Q 043355 81 PILSIRFSLDTKLIAIQRSSSEIQFWIRETSEA 113 (143)
Q Consensus 81 ~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~ 113 (143)
....|.|++|++++...+.+..|-.++.+++..
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~ 164 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV 164 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEE
Confidence 567999999999999999999999999887643
No 201
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=46.34 E-value=77 Score=22.57 Aligned_cols=95 Identities=14% Similarity=0.061 Sum_probs=53.3
Q ss_pred CcceeEeCCCcEEEEEcC-CCeEEEEEccCCCCCCCceecC--CCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceE
Q 043355 38 SRGLHYDDGTKLLISSTS-NQIFSWKTVPFNPLATSTSDSI--PEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAF 114 (143)
Q Consensus 38 ~~~vFyDDank~v~avrs-ggv~gv~v~~~~p~~~~~~fri--d~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~ 114 (143)
...+.+|...+..++-.. +++.-+ ++......+.+ ....+.+|.+++|+++......+..|-.++. ++...
T Consensus 185 ~~~i~~~~~g~l~v~~~~~~~i~~~-----~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~ 258 (299)
T 2z2n_A 185 PVGITKGNDDALWFVEIIGNKIGRI-----TTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE 258 (299)
T ss_dssp EEEEEECTTSSEEEEETTTTEEEEE-----CTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE
T ss_pred ceeEEECCCCCEEEEccCCceEEEE-----CCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceE
Confidence 456777765443333332 333222 22222223333 2347889999999999988888888888887 44221
Q ss_pred EEEecCCCCcEEEEEeccCCCceEEEE
Q 043355 115 SHRCRSDSENILGFFWTDCPLCDFVVV 141 (143)
Q Consensus 115 ~q~cK~k~~~IlGF~Wt~~~~cdivlV 141 (143)
..........+.++.+ ... .+.+.
T Consensus 259 ~~~~~~~~~~~~~i~~-~~g--~l~v~ 282 (299)
T 2z2n_A 259 EYPIQIKSAEPHGICF-DGE--TIWFA 282 (299)
T ss_dssp EEECSSSSCCEEEEEE-CSS--CEEEE
T ss_pred EEeCCCCCCccceEEe-cCC--CEEEE
Confidence 2222333456777776 544 44443
No 202
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=45.13 E-value=99 Score=23.46 Aligned_cols=54 Identities=9% Similarity=0.076 Sum_probs=34.4
Q ss_pred eCCCcEEEEEcC-CCeEEEEEccCCCCCCCceecCCC-CceeEEEecCCCcEEEEecCCCeEEEEEcCCCc
Q 043355 44 DDGTKLLISSTS-NQIFSWKTVPFNPLATSTSDSIPE-GPILSIRFSLDTKLIAIQRSSSEIQFWIRETSE 112 (143)
Q Consensus 44 DDank~v~avrs-ggv~gv~v~~~~p~~~~~~frid~-G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~ 112 (143)
+..++.|.+... .|-.-|+... .. ..+.++.++||+++|+ -.+..|..++. +|.
T Consensus 11 ~~~~~~v~~~d~~tG~~~w~~~~------------~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~ 66 (276)
T 3no2_A 11 GSGWNKIAIINKDTKEIVWEYPL------------EKGWECNSVAATKAGEILF--SYSKGAKMITR-DGR 66 (276)
T ss_dssp CTTCSEEEEEETTTTEEEEEEEC------------CTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC
T ss_pred eCCCCEEEEEECCCCeEEEEeCC------------CccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC
Confidence 334666666644 6666666622 12 2567888889998888 24566777777 553
No 203
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=44.75 E-value=1e+02 Score=23.55 Aligned_cols=36 Identities=8% Similarity=-0.082 Sum_probs=24.5
Q ss_pred ecCCCC-ceeEEEecCCCcEEEEecCCCeEEEEEcCCCc
Q 043355 75 DSIPEG-PILSIRFSLDTKLIAIQRSSSEIQFWIRETSE 112 (143)
Q Consensus 75 frid~G-~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~ 112 (143)
+.+..| .+..+.||||++.|-+--+ +|-.++..++.
T Consensus 219 ~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~ 255 (328)
T 3dsm_A 219 FKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADR 255 (328)
T ss_dssp EECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSS
T ss_pred EecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCc
Confidence 334445 6789999999887766433 67677776653
No 204
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=44.73 E-value=1.3e+02 Score=24.90 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=32.1
Q ss_pred CCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCC
Q 043355 37 ESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSS 100 (143)
Q Consensus 37 ~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~ 100 (143)
.+-.+..-+.+..|+.+++.| ..+.. . .++-+..=|-..| |+.|++..+.+++++..-+
T Consensus 151 ~lv~v~~~~~~~~i~l~T~~G-~~irf--~-~~~v~~~gR~a~G-V~~i~L~~~d~Vv~~~~~~ 209 (370)
T 3l6v_A 151 ALVGVALTDGDRDVLLFASNG-KTVRF--G-ESTVRSMGRTATG-VRGIRLAKGEEVVSLIVSE 209 (370)
T ss_dssp CEEEEEEECSCCEEEEEETTS-EEEEE--E-GGGSCBCCTTCCC-EECCCCCTTCCEEEEEEEC
T ss_pred EEEEEEEeCCCceEEEEeCCC-eEEEE--E-ccccCccCCCCCC-eeeEEeCCCCEEEEEEEec
Confidence 344455555666777776666 23333 1 1111111222344 6778888888888877654
No 205
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=44.48 E-value=88 Score=22.68 Aligned_cols=60 Identities=17% Similarity=0.200 Sum_probs=40.4
Q ss_pred CceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEEEecCCCCcEEEEEeccCCCceEEEEe
Q 043355 80 GPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENILGFFWTDCPLCDFVVVK 142 (143)
Q Consensus 80 G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~~cdivlVT 142 (143)
+.+..|.+++|+++......+..|-.++..++..... .......+.+..+.... +.++|+
T Consensus 226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~-~~~~~~~~~~i~~~~dg--~~l~v~ 285 (314)
T 1pjx_A 226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMR-IRCPFEKPSNLHFKPQT--KTIFVT 285 (314)
T ss_dssp CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEE-EECSSSCEEEEEECTTS--SEEEEE
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEE-EeCCCCCceeEEECCCC--CEEEEE
Confidence 5678999999999999988888888888775532221 12233557777774444 545543
No 206
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=44.41 E-value=47 Score=26.14 Aligned_cols=31 Identities=23% Similarity=0.097 Sum_probs=24.6
Q ss_pred ceeEEEecCCCcEEEEe-cC-CCeEEEEEcCCC
Q 043355 81 PILSIRFSLDTKLIAIQ-RS-SSEIQFWIRETS 111 (143)
Q Consensus 81 ~I~sIKFS~D~KiLAIQ-Rs-~~sVEFvn~~~~ 111 (143)
....|.||||+|.|.+- +. ..+|..++..++
T Consensus 109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~ 141 (361)
T 2oiz_A 109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG 141 (361)
T ss_dssp CGGGEEECTTSSEEEEEEESSSEEEEEEETTTT
T ss_pred CcceEEECCCCCEEEEECCCCCCeEEEEECCCC
Confidence 45679999999988774 55 688998888766
No 207
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=43.96 E-value=46 Score=28.11 Aligned_cols=55 Identities=16% Similarity=0.087 Sum_probs=35.7
Q ss_pred CCceeEEEecCC----CcEEEEec--------------------CCCeEEEEEc-CCC-ceEEEEecCCCCcEEEEEecc
Q 043355 79 EGPILSIRFSLD----TKLIAIQR--------------------SSSEIQFWIR-ETS-EAFSHRCRSDSENILGFFWTD 132 (143)
Q Consensus 79 ~G~I~sIKFS~D----~KiLAIQR--------------------s~~sVEFvn~-~~~-~~~~q~cK~k~~~IlGF~Wt~ 132 (143)
-++|+++.|||| +++++.-- .+..|+.+++ ++| ...++.-++...+++.|-=++
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~ 190 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ 190 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEE
T ss_pred ccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccC
Confidence 348889999999 88887622 2888899998 545 345556666667787776653
Q ss_pred C
Q 043355 133 C 133 (143)
Q Consensus 133 ~ 133 (143)
.
T Consensus 191 g 191 (356)
T 2w18_A 191 G 191 (356)
T ss_dssp T
T ss_pred C
Confidence 3
No 208
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=43.51 E-value=97 Score=22.90 Aligned_cols=69 Identities=14% Similarity=0.115 Sum_probs=40.9
Q ss_pred CcceeEeCCCcEEEEE-c-CCCeEEEEEccCCCCCCCceec-CCCCceeEEEecCCCcEEEEecCC----CeEEEEEcCC
Q 043355 38 SRGLHYDDGTKLLISS-T-SNQIFSWKTVPFNPLATSTSDS-IPEGPILSIRFSLDTKLIAIQRSS----SEIQFWIRET 110 (143)
Q Consensus 38 ~~~vFyDDank~v~av-r-sggv~gv~v~~~~p~~~~~~fr-id~G~I~sIKFS~D~KiLAIQRs~----~sVEFvn~~~ 110 (143)
..++-||...+ |+.+ . .+++.-|.. . ......+. ...+.|.+|.+++|+++++.-... ..|-.++.++
T Consensus 47 ~~~~~~~~~g~-l~~~~~~~~~i~~~d~--~--~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~ 121 (333)
T 2dg1_A 47 LEGLNFDRQGQ-LFLLDVFEGNIFKINP--E--TKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG 121 (333)
T ss_dssp EEEEEECTTSC-EEEEETTTCEEEEECT--T--TCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred ccCcEECCCCC-EEEEECCCCEEEEEeC--C--CCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC
Confidence 45677875444 5544 2 333433322 1 12222222 234589999999999988887655 5777777665
Q ss_pred C
Q 043355 111 S 111 (143)
Q Consensus 111 ~ 111 (143)
+
T Consensus 122 ~ 122 (333)
T 2dg1_A 122 D 122 (333)
T ss_dssp C
T ss_pred C
Confidence 5
No 209
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=41.73 E-value=1.6e+02 Score=24.91 Aligned_cols=55 Identities=15% Similarity=0.045 Sum_probs=41.9
Q ss_pred eecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEEEecCCCCcEEEEE
Q 043355 74 SDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENILGFF 129 (143)
Q Consensus 74 ~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~ 129 (143)
.+...+++|.++.||+++ .||.-=.+.+|-.++.+++..-.+..+.....|.+..
T Consensus 261 ~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~ 315 (524)
T 2j04_B 261 TLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVS 315 (524)
T ss_dssp EECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEE
T ss_pred EEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEE
Confidence 444567899999999875 7899999999999999876433344555667788873
No 210
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=38.32 E-value=1.4e+02 Score=23.23 Aligned_cols=85 Identities=15% Similarity=0.245 Sum_probs=56.0
Q ss_pred CcceeEeCCCcEEEEE-cCCCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCCceEEE
Q 043355 38 SRGLHYDDGTKLLISS-TSNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSH 116 (143)
Q Consensus 38 ~~~vFyDDank~v~av-rsggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q 116 (143)
++.+-+| + +.|++. ..|.+.=|.+ . ..+....+.-..++|.++.|+ +++|+.--.+.+|.+++.+++. ..+
T Consensus 122 ~~~~~~~-g-~~l~sg~~dg~i~vwd~--~-~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~-~~~ 193 (445)
T 2ovr_B 122 ITCLQFC-G-NRIVSGSDDNTLKVWSA--V-TGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE-CIH 193 (445)
T ss_dssp EEEEEEE-T-TEEEEEETTSCEEEEET--T-TCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE-EEE
T ss_pred EEEEEEc-C-CEEEEEECCCcEEEEEC--C-CCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc-EEE
Confidence 3556666 3 445554 4445555655 2 112223333367799999998 5688888999999999998873 345
Q ss_pred EecCCCCcEEEEEe
Q 043355 117 RCRSDSENILGFFW 130 (143)
Q Consensus 117 ~cK~k~~~IlGF~W 130 (143)
..+.....|.++.|
T Consensus 194 ~~~~h~~~v~~~~~ 207 (445)
T 2ovr_B 194 TLYGHTSTVRCMHL 207 (445)
T ss_dssp EECCCSSCEEEEEE
T ss_pred EECCCCCcEEEEEe
Confidence 55666778888888
No 211
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=38.07 E-value=29 Score=30.74 Aligned_cols=31 Identities=13% Similarity=0.216 Sum_probs=24.9
Q ss_pred ceeEEEec-CCCcEEEEecCC-----CeEEEEEcCCC
Q 043355 81 PILSIRFS-LDTKLIAIQRSS-----SEIQFWIRETS 111 (143)
Q Consensus 81 ~I~sIKFS-~D~KiLAIQRs~-----~sVEFvn~~~~ 111 (143)
.+.+.+|| ||++.||...+. ..|-+++.+++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g 211 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDP 211 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCC
Confidence 46889999 999999976653 25888888887
No 212
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=37.23 E-value=1.6e+02 Score=24.79 Aligned_cols=30 Identities=13% Similarity=-0.033 Sum_probs=24.7
Q ss_pred eeEEEecCCCcEEEEe-cC-CCeEEEEEcCCC
Q 043355 82 ILSIRFSLDTKLIAIQ-RS-SSEIQFWIRETS 111 (143)
Q Consensus 82 I~sIKFS~D~KiLAIQ-Rs-~~sVEFvn~~~~ 111 (143)
...+.||||+|.|-|. +. +.+|.+++..+.
T Consensus 179 P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~ 210 (426)
T 3c75_H 179 QWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK 210 (426)
T ss_dssp GGGSEECTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred cceEEEcCCCCEEEEEecCCCCeEEEEECCCC
Confidence 3567899999988885 55 689999999776
No 213
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=33.11 E-value=1.4e+02 Score=21.76 Aligned_cols=32 Identities=6% Similarity=0.032 Sum_probs=25.4
Q ss_pred CceeEEEecCCCcEEEEecCCCeEEEEEcC-CC
Q 043355 80 GPILSIRFSLDTKLIAIQRSSSEIQFWIRE-TS 111 (143)
Q Consensus 80 G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~-~~ 111 (143)
+.+.+|.||||+++|........|..++.. ++
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g 204 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARG 204 (296)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEEEECSSS
T ss_pred CCCccEEECCCCCEEEEeCCCCeEEEEEECCCC
Confidence 356899999999999667777888888874 44
No 214
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=32.03 E-value=1.4e+02 Score=21.50 Aligned_cols=66 Identities=15% Similarity=0.260 Sum_probs=37.9
Q ss_pred CcceeEeCCCcEEEEE--cCCCeEEEEEccCCCC-CC-CceecCCCCceeEEEecCCCc-EEEEecCCCeEEEEEcC
Q 043355 38 SRGLHYDDGTKLLISS--TSNQIFSWKTVPFNPL-AT-STSDSIPEGPILSIRFSLDTK-LIAIQRSSSEIQFWIRE 109 (143)
Q Consensus 38 ~~~vFyDDank~v~av--rsggv~gv~v~~~~p~-~~-~~~frid~G~I~sIKFS~D~K-iLAIQRs~~sVEFvn~~ 109 (143)
..++.+|... .+++. ..+++.-| +|+ .. ...+......+.+|.|++|++ +...-..+..|-.++.+
T Consensus 228 p~~i~~d~~G-~l~v~~~~~~~i~~~-----d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 228 ADGMDFDEDN-NLLVANWGSSHIEVF-----GPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEEEEBTTC-CEEEEEETTTEEEEE-----CTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCceEECCCC-CEEEEEcCCCEEEEE-----cCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 3456677544 44444 23444433 232 22 223344446788999999999 55555666677776664
No 215
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=26.27 E-value=77 Score=20.81 Aligned_cols=25 Identities=0% Similarity=-0.112 Sum_probs=21.7
Q ss_pred cceeEeCCCcEEEEE--cCCCeEEEEE
Q 043355 39 RGLHYDDGTKLLISS--TSNQIFSWKT 63 (143)
Q Consensus 39 ~~vFyDDank~v~av--rsggv~gv~v 63 (143)
.-||.|..++++-+| |.+|-+||.-
T Consensus 29 F~vF~n~etg~~nVVYRR~dG~yGlI~ 55 (65)
T 3ka5_A 29 FFVFQNGDSNEVNVVYKRKDGNYGLIE 55 (65)
T ss_dssp EEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred EEEEEeCCCCCEEEEEEeCCCCEEEEE
Confidence 358999999999998 7889999987
No 216
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=23.53 E-value=2e+02 Score=20.33 Aligned_cols=70 Identities=7% Similarity=0.032 Sum_probs=41.5
Q ss_pred CCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecC-C-CCceeEEEecCCCcEEEEecCCCeEEEEEcCCC
Q 043355 37 ESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSI-P-EGPILSIRFSLDTKLIAIQRSSSEIQFWIRETS 111 (143)
Q Consensus 37 ~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~fri-d-~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~ 111 (143)
....+.+|...+..++-..++... .+ ++......+.. . ...+.+|.+++|+++.........|-.++. ++
T Consensus 100 ~~~~i~~~~~g~l~v~~~~~~~i~-~~---d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g 171 (299)
T 2z2n_A 100 APYGITEGPNGDIWFTEMNGNRIG-RI---TDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SG 171 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEE-EE---CTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC
T ss_pred CceeeEECCCCCEEEEecCCceEE-EE---CCCCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CC
Confidence 466788886444444443333221 12 23223333333 2 236889999999999888877777877776 44
No 217
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=22.79 E-value=72 Score=21.00 Aligned_cols=25 Identities=4% Similarity=-0.233 Sum_probs=21.5
Q ss_pred cceeEeCCCcEEEEE--cCCCeEEEEE
Q 043355 39 RGLHYDDGTKLLISS--TSNQIFSWKT 63 (143)
Q Consensus 39 ~~vFyDDank~v~av--rsggv~gv~v 63 (143)
.-||.|..++++-+| |.+|-+||.-
T Consensus 30 F~vF~n~etg~~nVVYRR~dG~yGlI~ 56 (66)
T 3lyv_A 30 FFIYTDSEDGATNILYRREDGNLGLIE 56 (66)
T ss_dssp EEEEEETTTCSEEEEEECTTSSEEEEE
T ss_pred EEEEEeCCCCCEEEEEEECCCCEEEEE
Confidence 458999999999888 8889999977
No 218
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=21.72 E-value=83 Score=25.47 Aligned_cols=21 Identities=14% Similarity=-0.031 Sum_probs=16.8
Q ss_pred CCCcceeEeCCCcEEEEEcCCCe
Q 043355 36 PESRGLHYDDGTKLLISSTSNQI 58 (143)
Q Consensus 36 ~~~~~vFyDDank~v~avrsggv 58 (143)
..++.++|+. |+.|.+| ++|.
T Consensus 41 ~~~~~laf~P-~G~LYaV-~~G~ 61 (236)
T 1tl2_A 41 SNFKFLFLSP-GGELYGV-LNDK 61 (236)
T ss_dssp TTCSEEEECT-TSCEEEE-ETTE
T ss_pred ccceeEEECC-CccEEEE-eCCe
Confidence 3577899999 9999999 5553
No 219
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=21.38 E-value=2.2e+02 Score=20.02 Aligned_cols=92 Identities=7% Similarity=0.094 Sum_probs=51.4
Q ss_pred CCcceeEeCCCcEEEEEcC-CCeEEEEEccCCCCCCCcee-cCCC-CceeEEEecCCCcEEEEecCCCeEEEEEcCCCce
Q 043355 37 ESRGLHYDDGTKLLISSTS-NQIFSWKTVPFNPLATSTSD-SIPE-GPILSIRFSLDTKLIAIQRSSSEIQFWIRETSEA 113 (143)
Q Consensus 37 ~~~~vFyDDank~v~avrs-ggv~gv~v~~~~p~~~~~~f-rid~-G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~ 113 (143)
..+++.+|...+..++-.. +++.-+. ++...... .... ..+.+|.+++|+++......+..|..++..+...
T Consensus 151 ~p~~i~~~~~g~l~v~~~~~~~i~~~~-----~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~ 225 (270)
T 1rwi_B 151 DPDGVAVDNSGNVYVTDTDNNRVVKLE-----AESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS 225 (270)
T ss_dssp SCCCEEECTTCCEEEEEGGGTEEEEEC-----TTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred CceeEEEeCCCCEEEEECCCCEEEEEe-----cCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence 3567888864443333333 3333332 22211222 2222 5678999999999999988888898887754422
Q ss_pred EEEEecCCCCcEEEEEeccCC
Q 043355 114 FSHRCRSDSENILGFFWTDCP 134 (143)
Q Consensus 114 ~~q~cK~k~~~IlGF~Wt~~~ 134 (143)
.. .-..+-..+.+..+....
T Consensus 226 ~~-~~~~~~~~p~~i~~~~~g 245 (270)
T 1rwi_B 226 TV-LPFTGLNTPLAVAVDSDR 245 (270)
T ss_dssp EE-CCCCSCSCEEEEEECTTC
T ss_pred ee-eccCCCCCceeEEECCCC
Confidence 21 111122456777665544
No 220
>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A
Probab=21.01 E-value=1.1e+02 Score=22.09 Aligned_cols=47 Identities=6% Similarity=0.099 Sum_probs=33.9
Q ss_pred ceecCCCCcceeEeCCCcEEEEEcCCCeEEEEEccCCCCCCCceecCCCCce
Q 043355 31 LRCSIPESRGLHYDDGTKLLISSTSNQIFSWKTVPFNPLATSTSDSIPEGPI 82 (143)
Q Consensus 31 lR~~~~~~~~vFyDDank~v~avrsggv~gv~v~~~~p~~~~~~frid~G~I 82 (143)
|++++=+-..+|||..-..|.++..+|-+|+-- .-.|+--.+..|.+
T Consensus 3 l~l~ivtP~~~~~~~~v~~V~~p~~~Ge~GILp-----~H~p~it~L~~G~v 49 (138)
T 2rq6_A 3 MTVRVIAPDKTVWDAPAEEVILPSTTGQLGILS-----NHAPLLTALETGVM 49 (138)
T ss_dssp EEEEEECSSSEEEEEEESEEEECCTTSCEEEES-----SCCSEEEEECSEEE
T ss_pred eEEEEEcCCceEEeeeEEEEEEECCcCCeEEcC-----CCcceEeEeccEEE
Confidence 456666667899998889999999999899753 23445555566655
No 221
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=20.88 E-value=88 Score=19.86 Aligned_cols=25 Identities=8% Similarity=-0.161 Sum_probs=20.6
Q ss_pred cceeEeCCCcEEEEE--cCCCeEEEEE
Q 043355 39 RGLHYDDGTKLLISS--TSNQIFSWKT 63 (143)
Q Consensus 39 ~~vFyDDank~v~av--rsggv~gv~v 63 (143)
.-+|.|..++++-.| |.+|-+||..
T Consensus 29 F~vF~n~~t~~~nVvYrR~dG~yGlI~ 55 (57)
T 3k2t_A 29 FYVYTDAETNGTNIVYSRKDGKYGLIE 55 (57)
T ss_dssp EEEEEBSSSCCEEEEEECTTSCEEEEC
T ss_pred EEEEEcCCCCCEEEEEEeCCCCEEEEe
Confidence 348899898998888 7889899875
No 222
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=20.73 E-value=1.5e+02 Score=24.18 Aligned_cols=35 Identities=6% Similarity=-0.147 Sum_probs=26.9
Q ss_pred CCCceeEEEecCCCcEEEEec----------CCCeEEEEEcCCCceE
Q 043355 78 PEGPILSIRFSLDTKLIAIQR----------SSSEIQFWIRETSEAF 114 (143)
Q Consensus 78 d~G~I~sIKFS~D~KiLAIQR----------s~~sVEFvn~~~~~~~ 114 (143)
...| .|.||||+|.|.|-= ...+|.+++..++..-
T Consensus 65 G~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv 109 (368)
T 1mda_H 65 AFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI 109 (368)
T ss_dssp CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE
T ss_pred CCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE
Confidence 3446 799999999988863 3578999999887443
No 223
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=20.64 E-value=4.6e+02 Score=23.44 Aligned_cols=55 Identities=15% Similarity=0.300 Sum_probs=41.0
Q ss_pred EEEecCCCcEEEEecCCCeEEEEEcCCCceEEEEecCCCCcEEEEEeccCCCceEEEEeC
Q 043355 84 SIRFSLDTKLIAIQRSSSEIQFWIRETSEAFSHRCRSDSENILGFFWTDCPLCDFVVVKN 143 (143)
Q Consensus 84 sIKFS~D~KiLAIQRs~~sVEFvn~~~~~~~~q~cK~k~~~IlGF~Wt~~~~cdivlVTn 143 (143)
|.-..|..||||+ |..+.++.+|.++-....-- .=.+.++=.-|++.+ -+.|||+
T Consensus 70 sAIMnP~~~iiAL-rag~~lQiFnle~K~klks~--~~~e~VvfWkWis~~--~l~lVT~ 124 (494)
T 1bpo_A 70 SAIMNPASKVIAL-KAGKTLQIFNIEMKSKMKAH--TMTDDVTFWKWISLN--TVALVTD 124 (494)
T ss_dssp EEEECSSSSCEEE-EETTEEEEEETTTTEEEEEE--ECSSCCCEEEEEETT--EEEEECS
T ss_pred eeeeCCCCcEEEE-ecCCeEEEEchHHhhhhcce--ecCCCceEEEecCCC--eEEEEcC
Confidence 5568899999997 57999999999886332211 114567777888888 8888884
No 224
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=20.29 E-value=2.7e+02 Score=20.60 Aligned_cols=65 Identities=9% Similarity=0.213 Sum_probs=39.1
Q ss_pred ceeEeCCCcEEEEEc--CCCeEEEEEccCCCCCCCceecCCCCceeEEEecCCCcEEEEecCCCeEEEEEcCCC
Q 043355 40 GLHYDDGTKLLISST--SNQIFSWKTVPFNPLATSTSDSIPEGPILSIRFSLDTKLIAIQRSSSEIQFWIRETS 111 (143)
Q Consensus 40 ~vFyDDank~v~avr--sggv~gv~v~~~~p~~~~~~frid~G~I~sIKFS~D~KiLAIQRs~~sVEFvn~~~~ 111 (143)
+..||..++.|+.+. .+.+.-|.. . ......+. ..+.+.+|.+++|+++++-. ...|-.++.+++
T Consensus 17 gp~w~~~~~~l~~~d~~~~~i~~~d~--~--~~~~~~~~-~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g 83 (297)
T 3g4e_A 17 SPVWEEVSNSLLFVDIPAKKVCRWDS--F--TKQVQRVT-MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQ 83 (297)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEET--T--TCCEEEEE-CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTT
T ss_pred CCeEECCCCEEEEEECCCCEEEEEEC--C--CCcEEEEe-CCCceEEEEECCCCCEEEEE--CCeEEEEECCCC
Confidence 566777666666663 233333332 1 11112222 34678999999999987765 457777777665
Done!