BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043356
         (79 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ETS|A Chain A, Crystal Structure Of A Bacterial Arylsulfate
           Sulfotransferase Catalytic Intermediate With 4-
           Methylumbelliferone Bound In The Active Site
 pdb|3ETS|B Chain B, Crystal Structure Of A Bacterial Arylsulfate
           Sulfotransferase Catalytic Intermediate With 4-
           Methylumbelliferone Bound In The Active Site
 pdb|3ETT|A Chain A, Crystal Structure Of A Bacterial Arylsulfate
           Sulfotransferase Catalytic Intermediate With
           4-Nitrophenol Bound In The Active Site
 pdb|3ETT|B Chain B, Crystal Structure Of A Bacterial Arylsulfate
           Sulfotransferase Catalytic Intermediate With
           4-Nitrophenol Bound In The Active Site
          Length = 571

 Score = 29.3 bits (64), Expect = 0.56,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%)

Query: 10  GVRRAPKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVLPCAEST 69
           G+R  P+G F    G+    F +    L+D    +    A  E + +    ++L   +S 
Sbjct: 211 GIRETPRGTFTAVQGQHWYEFDMMGQVLEDHKLPRGFADATHESIETPNGTVLLRVGKSN 270

Query: 70  FRR 72
           +RR
Sbjct: 271 YRR 273


>pdb|3ELQ|A Chain A, Crystal Structure Of A Bacterial Arylsulfate
           Sulfotransferase
 pdb|3ELQ|B Chain B, Crystal Structure Of A Bacterial Arylsulfate
           Sulfotransferase
          Length = 571

 Score = 29.3 bits (64), Expect = 0.56,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%)

Query: 10  GVRRAPKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVLPCAEST 69
           G+R  P+G F    G+    F +    L+D    +    A  E + +    ++L   +S 
Sbjct: 211 GIRETPRGTFTAVQGQHWYEFDMMGQVLEDHKLPRGFADATHESIETPNGTVLLRVGKSN 270

Query: 70  FRR 72
           +RR
Sbjct: 271 YRR 273


>pdb|2P61|A Chain A, Crystal Structure Of Protein Tm1646 From Thermotoga
          Maritima, Pfam Duf327
          Length = 162

 Score = 26.2 bits (56), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 23 VGEEMRR-FVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVLPCAESTFRRFLN 75
          VGE  ++ F   L  +K+  F+KLLE+A EE + S    +  P   S  +R+ N
Sbjct: 29 VGESKKKEFFDILEDVKEDHFEKLLEEAVEEVIDSGNELVRSPTP-SNLKRYKN 81


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,249,233
Number of Sequences: 62578
Number of extensions: 78372
Number of successful extensions: 183
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 180
Number of HSP's gapped (non-prelim): 4
length of query: 79
length of database: 14,973,337
effective HSP length: 48
effective length of query: 31
effective length of database: 11,969,593
effective search space: 371057383
effective search space used: 371057383
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)