BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043356
(79 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1
Length = 82
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 6 RKDEGVRRAPKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRE-SGIVLP 64
RK APKG+ VYVGE+M+RFVIP+SY+ P+FQ LL +A EE+ + G+ +P
Sbjct: 9 RKASNAVDAPKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIP 68
Query: 65 CAESTFRRFLNLMD 78
C+E F+R ++
Sbjct: 69 CSEEVFQRITCCLN 82
>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1
Length = 82
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 6 RKDEGVRRAPKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRE-SGIVLP 64
RK APKG+ VYVGE+++RFVIP+SYL P+FQ LL +A EE+ + G+ +P
Sbjct: 9 RKASKAADAPKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIP 68
Query: 65 CAESTFRRFLNLMD 78
C+E F+ + ++
Sbjct: 69 CSEDVFQCITSCLN 82
>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1
Length = 90
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 16 KGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSR-ESGIVLPCAESTFRRFL 74
KG+ VYVGE+MRRFVIP+SYL P+FQ LL +A EE+ + G+ +PC+E F+
Sbjct: 27 KGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSEDVFQHIT 86
Query: 75 NLMD 78
+ ++
Sbjct: 87 SFLN 90
>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var.
radiata GN=ARG7 PE=2 SV=1
Length = 92
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 11 VRRAPKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRE-SGIVLPCAEST 69
V APKG+ VYVGE M+RFVIP+S+L P FQ LL +A EE+ + G+ +PC+E
Sbjct: 22 VLDAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSEDL 81
Query: 70 FRRFLNLMDS 79
F+ + + +
Sbjct: 82 FQHITSCLSA 91
>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1
Length = 92
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 14 APKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRE-SGIVLPCAESTF 70
PKG+ VVYVG++MRRF+IP+SYL P+FQ LL +A EE+ + G+ +PC E F
Sbjct: 25 VPKGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCKEDEF 82
>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1
Length = 93
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Query: 15 PKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRE-SGIVLPCAESTF 70
PKG+ VYVG++MRRF IP+SYL +P+FQ+LL +A EE+ + G+ +PC E F
Sbjct: 27 PKGYAAVYVGDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEEEF 83
>sp|Q9CHA1|MNMA_LACLA tRNA-specific 2-thiouridylase MnmA OS=Lactococcus lactis subsp.
lactis (strain IL1403) GN=mnmA PE=3 SV=1
Length = 376
Score = 32.3 bits (72), Expect = 0.98, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 25 EEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVLPCAESTFRRFL 74
E++++ + PL +L+ P +K+ EKA ++S + E F++FL
Sbjct: 164 EQLKKTMFPLGHLEKPEVRKIAEKAGLATAKKKDSTGICFIGEKNFKKFL 213
>sp|Q8CWW0|MNMA_STRR6 tRNA-specific 2-thiouridylase MnmA OS=Streptococcus pneumoniae
(strain ATCC BAA-255 / R6) GN=mnmA PE=3 SV=2
Length = 373
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 25 EEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVLPCAESTFRRFLN 75
E++++ + PL +LK P +KL E+A ++S + E F+ FL+
Sbjct: 162 EQLQKTMFPLGHLKKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS 212
>sp|Q04MV1|MNMA_STRP2 tRNA-specific 2-thiouridylase MnmA OS=Streptococcus pneumoniae
serotype 2 (strain D39 / NCTC 7466) GN=mnmA PE=3 SV=1
Length = 373
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 25 EEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVLPCAESTFRRFLN 75
E++++ + PL +LK P +KL E+A ++S + E F+ FL+
Sbjct: 162 EQLQKTMFPLGHLKKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS 212
>sp|A2RLX1|MNMA_LACLM tRNA-specific 2-thiouridylase MnmA OS=Lactococcus lactis subsp.
cremoris (strain MG1363) GN=mnmA PE=3 SV=2
Length = 376
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 25 EEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVLPCAESTFRRFL 74
E++++ + PL +L+ P +++ EKA ++S + E F++FL
Sbjct: 164 EQLKKTMFPLGHLEKPEVRRIAEKAGLATAKKKDSTGICFIGEKNFKKFL 213
>sp|Q030C8|MNMA_LACLS tRNA-specific 2-thiouridylase MnmA OS=Lactococcus lactis subsp.
cremoris (strain SK11) GN=mnmA PE=3 SV=2
Length = 376
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 25 EEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVLPCAESTFRRFL 74
E++++ + PL +L+ P +++ EKA ++S + E F++FL
Sbjct: 164 EQLKKTMFPLGHLEKPEVRRIAEKAGLATAKKKDSTGICFIGEKNFKKFL 213
>sp|Q8DRS4|MNMA_STRMU tRNA-specific 2-thiouridylase MnmA OS=Streptococcus mutans serotype
c (strain ATCC 700610 / UA159) GN=mnmA PE=3 SV=1
Length = 373
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 25 EEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVLPCAESTFRRFLN 75
E++++ + PL +L+ P +++ EKA ++S + E F+ FL+
Sbjct: 162 EQLQKVMFPLGHLQKPRVREIAEKAGLVTAKKKDSTGICFIGEKNFKEFLS 212
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,071,661
Number of Sequences: 539616
Number of extensions: 1032919
Number of successful extensions: 2112
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2098
Number of HSP's gapped (non-prelim): 13
length of query: 79
length of database: 191,569,459
effective HSP length: 50
effective length of query: 29
effective length of database: 164,588,659
effective search space: 4773071111
effective search space used: 4773071111
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)