Query 043356
Match_columns 79
No_of_seqs 112 out of 620
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 06:48:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043356.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043356hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3drz_A BTB/POZ domain-containi 68.8 11 0.00039 23.0 4.9 60 16-78 5-69 (107)
2 2vpk_A Myoneurin; transcriptio 66.3 7.8 0.00027 23.1 3.7 50 19-77 25-79 (116)
3 2vkp_A BTB/POZ domain-containi 63.5 13 0.00045 21.6 4.3 55 19-77 11-70 (109)
4 3ga1_A Nucleus accumbens-assoc 62.8 15 0.00052 22.3 4.7 50 19-77 36-89 (129)
5 1r29_A B-cell lymphoma 6 prote 61.8 8.7 0.0003 23.3 3.4 53 19-77 32-88 (127)
6 1y74_B MLIN-2/CASK, peripheral 59.2 3.5 0.00012 22.4 1.1 20 35-54 26-49 (50)
7 1und_A Advillin, P92; actin bi 57.5 2.2 7.5E-05 22.7 0.0 19 35-53 1-19 (37)
8 3n5b_B ASR0485 protein; PII, P 55.8 1.3 4.4E-05 29.1 -1.3 28 10-45 11-38 (112)
9 1s1g_A Potassium voltage-gated 50.5 6.8 0.00023 25.1 1.5 60 15-78 11-72 (124)
10 2xko_C PIPX, global nitrogen r 50.2 1.6 5.4E-05 27.6 -1.5 11 35-45 5-15 (89)
11 2al3_A TUG long isoform; TUG U 48.8 28 0.00096 21.6 4.1 38 19-58 11-48 (90)
12 2if5_A Zinc finger and BTB dom 48.6 30 0.001 20.4 4.3 54 19-77 28-84 (120)
13 1vd2_A Protein kinase C, IOTA 46.1 38 0.0013 20.7 4.5 42 18-63 6-49 (89)
14 3b84_A Zinc finger and BTB dom 43.3 30 0.001 20.7 3.6 49 20-77 28-79 (119)
15 3ohu_A Transcription regulator 41.8 21 0.0007 21.4 2.7 52 19-77 35-90 (125)
16 3htm_A Speckle-type POZ protei 41.0 57 0.002 20.1 4.8 54 19-77 37-93 (172)
17 2nz0_B Potassium voltage-gated 41.0 11 0.00037 24.7 1.4 60 15-78 33-94 (140)
18 2q81_A MIZ-1 protein; BTB/POZ 40.6 33 0.0011 20.5 3.5 49 19-77 30-81 (119)
19 1nn7_A Potassium channel KV4.2 38.7 4.9 0.00017 24.9 -0.6 56 19-78 2-59 (105)
20 1y6i_A Mg-chelatase cofactor G 34.2 2.6 8.9E-05 30.5 -2.7 30 12-43 200-229 (233)
21 1yu8_X Villin; alpha helix, 3- 33.8 8.5 0.00029 22.8 -0.0 19 35-53 31-49 (67)
22 1buo_A POZ domain, protein (pr 33.8 45 0.0015 19.8 3.4 49 19-77 31-82 (121)
23 3qli_A Coenzyme A transferase; 33.5 25 0.00085 27.3 2.5 19 37-55 436-454 (455)
24 3m91_B Prokaryotic ubiquitin-l 33.3 14 0.00047 20.5 0.8 19 42-60 23-43 (44)
25 1ujs_A Actin-binding LIM prote 31.6 12 0.0004 23.4 0.3 19 35-53 46-64 (88)
26 3pmi_A PWWP domain-containing 31.4 17 0.00059 24.3 1.2 29 26-54 47-78 (134)
27 1z3x_A Putative cytidyltransfe 30.8 1.6 5.5E-05 31.7 -4.3 29 12-42 208-236 (238)
28 3ezo_A Malonyl COA-acyl carrie 30.2 32 0.0011 24.6 2.5 39 18-56 11-49 (318)
29 2ihc_A Transcription regulator 30.0 51 0.0017 19.7 3.1 51 20-77 33-87 (124)
30 3fkc_A Transcriptional regulat 29.8 53 0.0018 19.6 3.2 48 20-77 35-85 (116)
31 2ppi_A Gigaxonin; BTB domain, 29.4 89 0.0031 19.3 4.3 56 19-77 50-108 (144)
32 1qzp_A Dematin; villin headpie 29.1 7.5 0.00026 23.0 -0.8 19 35-53 32-50 (68)
33 1zav_U 50S ribosomal protein L 28.9 36 0.0012 17.0 1.9 13 42-54 18-30 (30)
34 3drx_A BTB/POZ domain-containi 27.6 60 0.0021 22.6 3.5 61 15-78 10-75 (202)
35 2k6m_S Supervillin; SVHP, HP, 27.6 9.6 0.00033 22.5 -0.6 21 34-54 30-50 (67)
36 2yy9_A Zinc finger and BTB dom 27.4 44 0.0015 20.5 2.5 50 19-77 28-80 (135)
37 1w8x_N Protein P31, protein C, 24.5 17 0.00057 23.9 0.1 28 15-43 86-123 (126)
38 3eh7_A 4-hydroxybutyrate COA-t 23.6 44 0.0015 25.5 2.3 18 37-54 416-434 (434)
39 2z8h_A Transcription regulator 23.4 59 0.002 19.8 2.6 52 19-77 39-94 (138)
40 2ksn_A Ubiquitin domain-contai 22.7 38 0.0013 22.7 1.6 32 10-41 84-115 (137)
41 1zo0_A ODC-AZ, ornithine decar 21.9 48 0.0016 21.7 2.0 37 19-57 38-78 (126)
42 2lkt_A Retinoic acid receptor 21.3 39 0.0013 20.9 1.4 8 18-25 23-30 (125)
43 1xc0_A Pardaxin P-4, PA4; BEND 21.1 40 0.0014 17.2 1.2 16 36-51 9-24 (33)
44 2ccq_A P97, peptide N-glycanas 21.0 68 0.0023 19.7 2.5 41 37-77 46-95 (99)
No 1
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=68.79 E-value=11 Score=23.03 Aligned_cols=60 Identities=17% Similarity=0.218 Sum_probs=42.9
Q ss_pred CceEEEEEcCCceEEEEeccCCC-CH--HHHHHHHHHHHhcc--ccCCCceEeeCcHHHHHHHHHhhc
Q 043356 16 KGHFVVYVGEEMRRFVIPLSYLK-DP--TFQKLLEKAAEEYM--FSRESGIVLPCAESTFRRFLNLMD 78 (79)
Q Consensus 16 kG~~~VyVG~e~~RfvVp~~yL~-hP--~F~~LL~~aeeEfG--~~~~G~L~iPC~~~~Fe~vl~~l~ 78 (79)
...+.+.||. ++|.+..+-|. +| .|..|.... .++. .+.+|.+-|-.|...|++|+..+.
T Consensus 5 ~~~v~LNVGG--~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr 69 (107)
T 3drz_A 5 SKWVRLNVGG--TYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLR 69 (107)
T ss_dssp CCEEEEEETT--EEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCTTSCEEECSCHHHHHHHHHHHH
T ss_pred CCEEEEEECC--EEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCCCceEEecCChHHHHHHHHHhC
Confidence 3467888995 89999887664 44 566664321 1232 345699999999999999998764
No 2
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=66.29 E-value=7.8 Score=23.12 Aligned_cols=50 Identities=18% Similarity=0.367 Sum_probs=37.2
Q ss_pred EEEEEcCCceEEEEeccCC--CCHHHHHHHHHHHHhccccCCCceEee---CcHHHHHHHHHhh
Q 043356 19 FVVYVGEEMRRFVIPLSYL--KDPTFQKLLEKAAEEYMFSRESGIVLP---CAESTFRRFLNLM 77 (79)
Q Consensus 19 ~~VyVG~e~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~G~L~iP---C~~~~Fe~vl~~l 77 (79)
+.+.||+ ++|-+.-..| ..|.|++++... .+..++|+ .+...|+.++..+
T Consensus 25 v~l~v~~--~~~~aHk~vLaa~S~yF~~~f~~~-------~~~~i~l~~~~~~~~~f~~ll~~~ 79 (116)
T 2vpk_A 25 CTIVIGE--FQFKAHRNVLASFSEYFGAIYRST-------SENNVFLDQSQVKADGFQKLLEFI 79 (116)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHTTC-------CCSCEECCTTTCCHHHHHHHHHHH
T ss_pred EEEEECC--EEEeccHHHHhhcCHHHHHHHcCC-------CCCeEEeecCCCCHHHHHHHHHHH
Confidence 3455664 6788877776 679999998654 35778888 7899999988754
No 3
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=63.52 E-value=13 Score=21.63 Aligned_cols=55 Identities=22% Similarity=0.266 Sum_probs=37.7
Q ss_pred EEEEEcC--CceEEEEeccCC--CCHHHHHHHHHHHHhccccCCCceEee-CcHHHHHHHHHhh
Q 043356 19 FVVYVGE--EMRRFVIPLSYL--KDPTFQKLLEKAAEEYMFSRESGIVLP-CAESTFRRFLNLM 77 (79)
Q Consensus 19 ~~VyVG~--e~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~G~L~iP-C~~~~Fe~vl~~l 77 (79)
+.+.||+ +.++|-+.-..| ..|.|++++...-.|- . ..|.|| .+...|+.++..+
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~---~-~~i~l~~~~~~~f~~~l~~i 70 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV---K-SEIHIPDVEPAAFLILLKYM 70 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---------C-CEEEETTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC---C-CeEEeCCCCHHHHHHHHHHH
Confidence 3455665 358888888887 6899999997543332 2 678887 5899999988754
No 4
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=62.78 E-value=15 Score=22.32 Aligned_cols=50 Identities=22% Similarity=0.388 Sum_probs=37.7
Q ss_pred EEEEEcCCceEEEEeccCCC--CHHHHHHHHHHHHhccccCCCceEee--CcHHHHHHHHHhh
Q 043356 19 FVVYVGEEMRRFVIPLSYLK--DPTFQKLLEKAAEEYMFSRESGIVLP--CAESTFRRFLNLM 77 (79)
Q Consensus 19 ~~VyVG~e~~RfvVp~~yL~--hP~F~~LL~~aeeEfG~~~~G~L~iP--C~~~~Fe~vl~~l 77 (79)
+.+.||+ ++|-+.-..|. .|.|++++... ....|.|| .+...|+.++..+
T Consensus 36 v~l~v~~--~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~~~~~~~~f~~ll~~i 89 (129)
T 3ga1_A 36 VSVVVKG--HAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELPAAVQPQSFQQILSFC 89 (129)
T ss_dssp EEEEETT--EEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECCTTCCHHHHHHHHHHH
T ss_pred eEEEECC--EEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEECCCCCHHHHHHHHHHH
Confidence 4556664 67777766664 79999998865 45789997 8999999998764
No 5
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=61.80 E-value=8.7 Score=23.27 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=39.3
Q ss_pred EEEEEcCCceEEEEeccCC--CCHHHHHHHHHHHHhccccCCCceEe-e-CcHHHHHHHHHhh
Q 043356 19 FVVYVGEEMRRFVIPLSYL--KDPTFQKLLEKAAEEYMFSRESGIVL-P-CAESTFRRFLNLM 77 (79)
Q Consensus 19 ~~VyVG~e~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~G~L~i-P-C~~~~Fe~vl~~l 77 (79)
+.+.||+ ++|-+.-..| ..|.|++++...-.| ....|.| + .+...|+.++..+
T Consensus 32 v~l~v~~--~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~~~~~~f~~ll~~~ 88 (127)
T 1r29_A 32 VVIVVSR--EQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPEINPEGFNILLDFM 88 (127)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECC--EEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCCCCHHHHHHHHHHH
Confidence 3455664 6788777777 689999999765444 4578999 4 6889999998764
No 6
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=59.22 E-value=3.5 Score=22.40 Aligned_cols=20 Identities=40% Similarity=0.609 Sum_probs=14.8
Q ss_pred cCCCCHHHHHHHHH----HHHhcc
Q 043356 35 SYLKDPTFQKLLEK----AAEEYM 54 (79)
Q Consensus 35 ~yL~hP~F~~LL~~----aeeEfG 54 (79)
..|+.|.||+||+- |.++||
T Consensus 26 ~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc
Confidence 46789999999974 445553
No 7
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=57.52 E-value=2.2 Score=22.69 Aligned_cols=19 Identities=16% Similarity=0.483 Sum_probs=16.9
Q ss_pred cCCCCHHHHHHHHHHHHhc
Q 043356 35 SYLKDPTFQKLLEKAAEEY 53 (79)
Q Consensus 35 ~yL~hP~F~~LL~~aeeEf 53 (79)
.||+.--|+.++.++.+||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4899999999999999997
No 8
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=55.78 E-value=1.3 Score=29.07 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=9.0
Q ss_pred CCCCCCCceEEEEEcCCceEEEEeccCCCCHHHHHH
Q 043356 10 GVRRAPKGHFVVYVGEEMRRFVIPLSYLKDPTFQKL 45 (79)
Q Consensus 10 ~~~~vpkG~~~VyVG~e~~RfvVp~~yL~hP~F~~L 45 (79)
++.-||+|..--=+.. -.|||||.|.-|
T Consensus 11 ~~~~~~~~~~~~~ms~--------E~YLNHPTFGLL 38 (112)
T 3n5b_B 11 SSGLVPRGSHMNPENS--------ETYINHPTWGLL 38 (112)
T ss_dssp ---------------C--------CCEEEETTTEEE
T ss_pred cCCcccCCccCCCcch--------hhhccCCccchh
Confidence 4456777754322222 239999998544
No 9
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=50.49 E-value=6.8 Score=25.12 Aligned_cols=60 Identities=25% Similarity=0.363 Sum_probs=40.7
Q ss_pred CCceEEEEEcCCceEEEEeccCCC-CHHHHHHHHHHHHhcccc-CCCceEeeCcHHHHHHHHHhhc
Q 043356 15 PKGHFVVYVGEEMRRFVIPLSYLK-DPTFQKLLEKAAEEYMFS-RESGIVLPCAESTFRRFLNLMD 78 (79)
Q Consensus 15 pkG~~~VyVG~e~~RfvVp~~yL~-hP~F~~LL~~aeeEfG~~-~~G~L~iPC~~~~Fe~vl~~l~ 78 (79)
....+.+.||. .||.+..+-|. +|- .+|..++...-++ .+|.+-|-.|...|++||..+.
T Consensus 11 ~~~~V~LNVGG--~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR 72 (124)
T 1s1g_A 11 QDELIVLNVSG--RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYR 72 (124)
T ss_dssp -CCEEEEEETT--EEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHHH
T ss_pred CCCEEEEEeCC--EEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHHHh
Confidence 44578888995 99999877553 331 2333343333333 4599999999999999998764
No 10
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=50.16 E-value=1.6 Score=27.64 Aligned_cols=11 Identities=55% Similarity=0.966 Sum_probs=8.4
Q ss_pred cCCCCHHHHHH
Q 043356 35 SYLKDPTFQKL 45 (79)
Q Consensus 35 ~yL~hP~F~~L 45 (79)
.|||||.|.-|
T Consensus 5 ~YLNHPtFGlL 15 (89)
T 2xko_C 5 NYLNHPTFGLL 15 (89)
T ss_dssp CEEEETTTEEE
T ss_pred ccccCCccchh
Confidence 59999988543
No 11
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=48.76 E-value=28 Score=21.61 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=29.1
Q ss_pred EEEEEcCCceEEEEeccCCCCHHHHHHHHHHHHhccccCC
Q 043356 19 FVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRE 58 (79)
Q Consensus 19 ~~VyVG~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~ 58 (79)
-.+++....+|+.|.+ -..-.+.++|++|-+.||++.+
T Consensus 11 ~v~Vl~~n~rr~~VKv--tp~t~L~~VL~eaC~K~gl~~~ 48 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKV--TPSTVLLQVLEDTCRRQDFNPS 48 (90)
T ss_dssp CEEEECTTSCEEEECC--CTTSBHHHHHHHHHHHTTCCGG
T ss_pred EEEEEcCCCcEEEEEE--CCCCCHHHHHHHHHHHhCCChh
Confidence 3445555689999998 3445788999999999999765
No 12
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=48.64 E-value=30 Score=20.44 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=36.7
Q ss_pred EEEEEcCCceEEEEeccCC--CCHHHHHHHHHHHHhccccCCCceEee-CcHHHHHHHHHhh
Q 043356 19 FVVYVGEEMRRFVIPLSYL--KDPTFQKLLEKAAEEYMFSRESGIVLP-CAESTFRRFLNLM 77 (79)
Q Consensus 19 ~~VyVG~e~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~G~L~iP-C~~~~Fe~vl~~l 77 (79)
+.+.||+ ++|-+.-..| ..|.|++++...-.| .....|.|+ .+...|+.++..+
T Consensus 28 v~l~v~~--~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~ll~~~ 84 (120)
T 2if5_A 28 VVILVEG--REFPTHRSVLAACSQYFKKLFTSGAVV---DQQNVYEIDFVSAEALTALMDFA 84 (120)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHHC--------CCSEEECCSSCHHHHHHHHHHH
T ss_pred eEEEECC--EEEeHHHHHHHHhCHHHHHHhcCCccc---cCCceEEeCCCCHHHHHHHHHHH
Confidence 3455664 7788877777 489999998743222 234678898 5889999988754
No 13
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=46.08 E-value=38 Score=20.71 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=30.1
Q ss_pred eEEEEE--cCCceEEEEeccCCCCHHHHHHHHHHHHhccccCCCceEe
Q 043356 18 HFVVYV--GEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVL 63 (79)
Q Consensus 18 ~~~VyV--G~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~G~L~i 63 (79)
-+.|-+ .++..|+.+|. ...|++|.++-.+-|++..+.++++
T Consensus 6 ~vkvK~~~~gdi~~~~v~~----~i~~~~L~~kv~~~~~~~~~~~f~l 49 (89)
T 1vd2_A 6 QVRVKAYYRGDIMITHFEP----SISFEGLCNEVRDMCSFDNEQLFTM 49 (89)
T ss_dssp CEEEEEESSSCEEEEEECT----TCCHHHHHHHHHHHTTCCSSCCEEE
T ss_pred eEEEEEEeCCeEEEEECCC----CCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 344543 33578888886 5689999999999999865554444
No 14
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=43.27 E-value=30 Score=20.67 Aligned_cols=49 Identities=27% Similarity=0.317 Sum_probs=35.4
Q ss_pred EEEEcCCceEEEEeccCC--CCHHHHHHHHHHHHhccccCCCceEee-CcHHHHHHHHHhh
Q 043356 20 VVYVGEEMRRFVIPLSYL--KDPTFQKLLEKAAEEYMFSRESGIVLP-CAESTFRRFLNLM 77 (79)
Q Consensus 20 ~VyVG~e~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~G~L~iP-C~~~~Fe~vl~~l 77 (79)
.+.||+ ++|-+.-..| ..|.|++++... . ...|.|| .+...|+.++..+
T Consensus 28 ~l~v~~--~~f~aHk~vLaa~S~yF~~~f~~~-----~--~~~i~l~~~~~~~f~~ll~~i 79 (119)
T 3b84_A 28 TLDVGG--LVFKAHWSVLACCSHFFQSLYGDG-----S--GGSVVLPAGFAEIFGLLLDFF 79 (119)
T ss_dssp EEEETT--EEEEECHHHHHHHCHHHHHHHTTT-----T--CCCEEECGGGHHHHHHHHHHH
T ss_pred EEEECC--EEEEeeHHHHhhcCHHHHHHHCCC-----C--CCeEEeCCCCHHHHHHHHHHH
Confidence 455664 6777776666 479999988642 1 5789998 5688999888754
No 15
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=41.84 E-value=21 Score=21.45 Aligned_cols=52 Identities=17% Similarity=0.267 Sum_probs=36.4
Q ss_pred EEEEEcCCceEEEEeccCCC--CHHHHHHHHHHHHhccccCCCceEee--CcHHHHHHHHHhh
Q 043356 19 FVVYVGEEMRRFVIPLSYLK--DPTFQKLLEKAAEEYMFSRESGIVLP--CAESTFRRFLNLM 77 (79)
Q Consensus 19 ~~VyVG~e~~RfvVp~~yL~--hP~F~~LL~~aeeEfG~~~~G~L~iP--C~~~~Fe~vl~~l 77 (79)
+.+.||+ ++|-+.-..|. .|.|++++.....| ...|.|| .+...|+.++..+
T Consensus 35 v~l~v~~--~~f~aHk~vLaa~S~yF~~~f~~~~~e-----~~~i~l~~~~~~~~f~~~l~~i 90 (125)
T 3ohu_A 35 VTLIVER--KEFRAHRAVLAACSEYFWQALVGQTKN-----DLVVSLPEEVTARGFGPLLQFA 90 (125)
T ss_dssp EEEEETT--EEEEECHHHHHHHBHHHHHHHTTCCCS-----SCEEECCTTCCHHHHHHHHHHH
T ss_pred eEEEECC--EEEechHHHHHHcCHHHHHHhcCCCCC-----CcEEEeCCCCCHHHHHHHHHhH
Confidence 3455664 67777766664 68999998754322 4678887 7999999998765
No 16
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=40.98 E-value=57 Score=20.15 Aligned_cols=54 Identities=19% Similarity=0.436 Sum_probs=38.3
Q ss_pred EEEEEcCCceEEEEeccCC--CCHHHHHHHHHHHHhccccCCCceEee-CcHHHHHHHHHhh
Q 043356 19 FVVYVGEEMRRFVIPLSYL--KDPTFQKLLEKAAEEYMFSRESGIVLP-CAESTFRRFLNLM 77 (79)
Q Consensus 19 ~~VyVG~e~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~G~L~iP-C~~~~Fe~vl~~l 77 (79)
+.+.||+ ++|-+.-..| ..|.|+.++...-.| .....|.|| .+...|+.++..+
T Consensus 37 v~l~v~~--~~~~~Hk~iL~~~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~~l~~~ 93 (172)
T 3htm_A 37 CCLCVAG--QEFQAHKAILAARSPVFSAMFEHEMEE---SKKNRVEINDVEPEVFKEMMCFI 93 (172)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHHSCCCG---GGTTEEEECSSCHHHHHHHHHHH
T ss_pred eEEEECC--EEEEeeHHHHHHcCHHHHHHHccCccc---cCCCeEEecCCCHHHHHHHHHHH
Confidence 4566764 6788887776 479999999842111 234678887 5899999988754
No 17
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=40.96 E-value=11 Score=24.73 Aligned_cols=60 Identities=25% Similarity=0.368 Sum_probs=41.3
Q ss_pred CCceEEEEEcCCceEEEEeccCC-CCHHHHHHHHHHHHhccc-cCCCceEeeCcHHHHHHHHHhhc
Q 043356 15 PKGHFVVYVGEEMRRFVIPLSYL-KDPTFQKLLEKAAEEYMF-SRESGIVLPCAESTFRRFLNLMD 78 (79)
Q Consensus 15 pkG~~~VyVG~e~~RfvVp~~yL-~hP~F~~LL~~aeeEfG~-~~~G~L~iPC~~~~Fe~vl~~l~ 78 (79)
....+.+.||. .||.+..+-| ++|- .+|..+....-+ +.+|.+-|-.|...|++||..+.
T Consensus 33 ~~~~V~LNVGG--~~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR 94 (140)
T 2nz0_B 33 QDELIVLNVSG--RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYR 94 (140)
T ss_dssp CCCEEEEEETT--EEEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECC--EEEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHHHHh
Confidence 45678888995 9999987655 2331 133334433334 34599999999999999998764
No 18
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=40.57 E-value=33 Score=20.46 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=35.5
Q ss_pred EEEEEcCCceEEEEeccCC--CCHHHHHHHHHHHHhccccCCCceEeeC-cHHHHHHHHHhh
Q 043356 19 FVVYVGEEMRRFVIPLSYL--KDPTFQKLLEKAAEEYMFSRESGIVLPC-AESTFRRFLNLM 77 (79)
Q Consensus 19 ~~VyVG~e~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~G~L~iPC-~~~~Fe~vl~~l 77 (79)
+.+.||+ ++|-+.-..| ..|.|++++.. ++..+.++- +...|+.++..+
T Consensus 30 v~l~v~~--~~~~aHk~vLaa~S~yF~~~f~~--------~~~~i~l~~~~~~~f~~ll~~~ 81 (119)
T 2q81_A 30 CTFVVDG--VHFKAHKAVLAACSEYFKMLFVD--------QKDVVHLDISNAAGLGQVLEFM 81 (119)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHHH--------CCSGGGGGGCCHHHHHHHHHHH
T ss_pred eEEEECC--EEEehhHHHHHHcCHHHHHHHcC--------CCCEEEeCCCCHHHHHHHHHHH
Confidence 3455664 7788877777 48999999985 245677775 788899888754
No 19
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=38.65 E-value=4.9 Score=24.91 Aligned_cols=56 Identities=21% Similarity=0.380 Sum_probs=35.8
Q ss_pred EEEEEcCCceEEEEeccCC-CCHHHHHHHHHHHHhcccc-CCCceEeeCcHHHHHHHHHhhc
Q 043356 19 FVVYVGEEMRRFVIPLSYL-KDPTFQKLLEKAAEEYMFS-RESGIVLPCAESTFRRFLNLMD 78 (79)
Q Consensus 19 ~~VyVG~e~~RfvVp~~yL-~hP~F~~LL~~aeeEfG~~-~~G~L~iPC~~~~Fe~vl~~l~ 78 (79)
+.+.||. .+|.+..+-| ++|- .+|..++...-++ .+|.+-|-.|...|++||..+.
T Consensus 2 V~LNVGG--~~f~t~~~TL~~~p~--s~L~~~~~~~~~~~~~~~~FiDRdp~~F~~ILnflR 59 (105)
T 1nn7_A 2 IVLNVSG--TRFQTWQDTLERYPD--TLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYR 59 (105)
T ss_dssp EEEEETT--EEEEECHHHHHTSCS--SSTTSGGGGGGEEGGGTEEEECSCTTTHHHHHHHHH
T ss_pred EEEEECC--EEEEEeHHHHhcCCC--ccccccCCcccccCCCCcEEEeCCcHHHHHHHHHHh
Confidence 4567884 8888876544 2231 1222233332233 3599999999999999998764
No 20
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=34.22 E-value=2.6 Score=30.49 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=19.7
Q ss_pred CCCCCceEEEEEcCCceEEEEeccCCCCHHHH
Q 043356 12 RRAPKGHFVVYVGEEMRRFVIPLSYLKDPTFQ 43 (79)
Q Consensus 12 ~~vpkG~~~VyVG~e~~RfvVp~~yL~hP~F~ 43 (79)
...|+||+|..-.--.-| +=.+.|+||.|.
T Consensus 200 l~AP~GHLP~~~~lrG~~--l~~~ll~hpa~~ 229 (233)
T 1y6i_A 200 LSAPQGHLPLLNQLRGVR--VAESLYRHPVWS 229 (233)
T ss_dssp TTSCTTCCSCCCCTTCTH--HHHHHHTSTHHH
T ss_pred CCCCCCCCCCccccchHH--HHHHHHCCcccc
Confidence 358999999864211122 456788888884
No 21
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=33.79 E-value=8.5 Score=22.81 Aligned_cols=19 Identities=16% Similarity=0.387 Sum_probs=17.9
Q ss_pred cCCCCHHHHHHHHHHHHhc
Q 043356 35 SYLKDPTFQKLLEKAAEEY 53 (79)
Q Consensus 35 ~yL~hP~F~~LL~~aeeEf 53 (79)
.||+.--|++++.++.+||
T Consensus 31 ~yLsdedF~~vFgms~~eF 49 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAF 49 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHH
T ss_pred hcCCHHHHHHHHCcCHHHH
Confidence 6999999999999999998
No 22
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=33.75 E-value=45 Score=19.84 Aligned_cols=49 Identities=20% Similarity=0.350 Sum_probs=34.8
Q ss_pred EEEEEcCCceEEEEeccCC--CCHHHHHHHHHHHHhccccCCCceEee-CcHHHHHHHHHhh
Q 043356 19 FVVYVGEEMRRFVIPLSYL--KDPTFQKLLEKAAEEYMFSRESGIVLP-CAESTFRRFLNLM 77 (79)
Q Consensus 19 ~~VyVG~e~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~G~L~iP-C~~~~Fe~vl~~l 77 (79)
+.+.||+ ++|-+.-..| ..|.|++++.. ....+.|+ .+...|+.++..+
T Consensus 31 v~l~v~~--~~f~aHk~vLaa~S~yF~~~f~~--------~~~~i~l~~~~~~~f~~ll~~~ 82 (121)
T 1buo_A 31 VVIMVDS--QEFHAHRTVLACTSKMFEILFHR--------NSQHYTLDFLSPKTFQQILEYA 82 (121)
T ss_dssp EEEEESS--CEEEECHHHHHHHCHHHHHHTTS--------CCSEEEECSSCHHHHHHHHHHH
T ss_pred EEEEECC--EEEehhHHHHhhcCHHHHHHHcC--------CCcEEEeCCCCHHHHHHHHHhh
Confidence 3455664 6777776665 68999998853 24678887 6889999888754
No 23
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=33.51 E-value=25 Score=27.35 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHHHHHhccc
Q 043356 37 LKDPTFQKLLEKAAEEYMF 55 (79)
Q Consensus 37 L~hP~F~~LL~~aeeEfG~ 55 (79)
+.||-||+.|.+++++.|+
T Consensus 436 iAHPdfR~~L~~~A~~~~~ 454 (455)
T 3qli_A 436 LAHPDFRDELTQAAKKMHL 454 (455)
T ss_dssp TSCHHHHHHHHHHHHHTTC
T ss_pred ccCcchHHHHHHHHHHcCC
Confidence 8899999999998888764
No 24
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=33.31 E-value=14 Score=20.50 Aligned_cols=19 Identities=26% Similarity=0.695 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhc--cccCCCc
Q 043356 42 FQKLLEKAAEEY--MFSRESG 60 (79)
Q Consensus 42 F~~LL~~aeeEf--G~~~~G~ 60 (79)
+-.+|+.-+||| ||-|+|+
T Consensus 23 Id~vLE~NAeeFV~~fVQKGG 43 (44)
T 3m91_B 23 IDDVLEENAEDFVRAYVQKGG 43 (44)
T ss_dssp HHHHHHHTC------------
T ss_pred HHHHHHHhHHHHHHHHHHccC
Confidence 346778888888 8888764
No 25
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=31.59 E-value=12 Score=23.35 Aligned_cols=19 Identities=16% Similarity=0.336 Sum_probs=18.1
Q ss_pred cCCCCHHHHHHHHHHHHhc
Q 043356 35 SYLKDPTFQKLLEKAAEEY 53 (79)
Q Consensus 35 ~yL~hP~F~~LL~~aeeEf 53 (79)
.||+.--|++++.|+.+||
T Consensus 46 ~YLSdedF~~vFgMsr~eF 64 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEF 64 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHH
T ss_pred hcCCHHHHHHHHCcCHHHH
Confidence 6999999999999999998
No 26
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=31.39 E-value=17 Score=24.34 Aligned_cols=29 Identities=34% Similarity=0.549 Sum_probs=25.6
Q ss_pred CceEEEEeccCCCC---HHHHHHHHHHHHhcc
Q 043356 26 EMRRFVIPLSYLKD---PTFQKLLEKAAEEYM 54 (79)
Q Consensus 26 e~~RfvVp~~yL~h---P~F~~LL~~aeeEfG 54 (79)
+++=|.||++-|+| -.-++|+++|.|.|+
T Consensus 47 ekrGi~V~LrrLK~fDC~ek~~L~~rAre~Y~ 78 (134)
T 3pmi_A 47 KMKGFTVSLKSLKHFDCKEKQTLLNQAREDFN 78 (134)
T ss_dssp TSCCEEEEGGGCEETTSTTHHHHHHHHTTTCH
T ss_pred ccCceEeEcccCCCCChHhHHHHHHHHHHHhc
Confidence 67889999998887 467999999999997
No 27
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=30.76 E-value=1.6 Score=31.73 Aligned_cols=29 Identities=24% Similarity=0.470 Sum_probs=18.7
Q ss_pred CCCCCceEEEEEcCCceEEEEeccCCCCHHH
Q 043356 12 RRAPKGHFVVYVGEEMRRFVIPLSYLKDPTF 42 (79)
Q Consensus 12 ~~vpkG~~~VyVG~e~~RfvVp~~yL~hP~F 42 (79)
...|+||+|+.-. -+=.-+=.+.|+||.|
T Consensus 208 l~AP~GHLP~~~~--lrGv~l~~~ll~hpa~ 236 (238)
T 1z3x_A 208 LSAPRGHLPLTNQ--LRGVQVLNALLNHPAW 236 (238)
T ss_dssp TTSCTTCCSCCCC--TTCSHHHHHHHTCGGG
T ss_pred CCCCCCCCCcCcc--cccHHHHHHHHcCccc
Confidence 3689999998632 2222344567888876
No 28
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B}
Probab=30.16 E-value=32 Score=24.56 Aligned_cols=39 Identities=10% Similarity=0.162 Sum_probs=25.3
Q ss_pred eEEEEEcCCceEEEEeccCCCCHHHHHHHHHHHHhcccc
Q 043356 18 HFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFS 56 (79)
Q Consensus 18 ~~~VyVG~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~ 56 (79)
..-|+-|...+..=.-.+.+++|.|++.++++.+.+|++
T Consensus 11 ~~f~F~GQGsQ~~gMg~~L~~~p~fr~~~~~~~~~lg~~ 49 (318)
T 3ezo_A 11 FAFVFPGQGSQSVGMLNAFADVAVVRETLDEASDALGQD 49 (318)
T ss_dssp EEEEECCTTCCCTTTTGGGTTCHHHHHHHHHHHHHHSSC
T ss_pred eEEEECCcchhhhhHHHHHhhCHHHHHHHHHHHHHhCCC
Confidence 445666653222222223338999999999999998864
No 29
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=30.04 E-value=51 Score=19.75 Aligned_cols=51 Identities=24% Similarity=0.372 Sum_probs=34.3
Q ss_pred EEEEcCCceEEEEeccCC--CCHHHHHHHHHHHHhccccCCCceEee--CcHHHHHHHHHhh
Q 043356 20 VVYVGEEMRRFVIPLSYL--KDPTFQKLLEKAAEEYMFSRESGIVLP--CAESTFRRFLNLM 77 (79)
Q Consensus 20 ~VyVG~e~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~G~L~iP--C~~~~Fe~vl~~l 77 (79)
.+.||+ ++|-+.-..| ..|.|++++...-. ....+.+| .+...|+.++..+
T Consensus 33 ~l~v~~--~~~~aHk~vLaa~S~yF~~mf~~~~~-----e~~~i~l~~~v~~~~f~~lL~~i 87 (124)
T 2ihc_A 33 TIFVEG--QRFRAHRSVLAACSSYFHSRIVGQAD-----GELNITLPEEVTVKGFEPLIQFA 87 (124)
T ss_dssp EEEETT--EEEEECHHHHHHHBHHHHHHHTTC--------CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECC--EEEecHHHHHHHcCHHHHHHHcCCCC-----CCceEeecCCcCHHHHHHHHHHh
Confidence 455664 6777776666 57999999864322 23568885 6888899888654
No 30
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=29.84 E-value=53 Score=19.57 Aligned_cols=48 Identities=25% Similarity=0.374 Sum_probs=33.5
Q ss_pred EEEEcCCceEEEEeccCC--CCHHHHHHHHHHHHhccccCCCceEee-CcHHHHHHHHHhh
Q 043356 20 VVYVGEEMRRFVIPLSYL--KDPTFQKLLEKAAEEYMFSRESGIVLP-CAESTFRRFLNLM 77 (79)
Q Consensus 20 ~VyVG~e~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~G~L~iP-C~~~~Fe~vl~~l 77 (79)
.+.||+ ++|-+.-..| ..|.|++++... ...|.++ .+...|+.++..+
T Consensus 35 ~l~v~~--~~f~aHk~vLaa~S~~F~~~f~~~--------~~~i~l~~~~~~~f~~~l~~~ 85 (116)
T 3fkc_A 35 TVIVED--RKFRAHKNILSASSTYFHQLFSVA--------GQVVELSFIRAEIFAEILNYI 85 (116)
T ss_dssp EEEETT--EEEEECHHHHHHHCHHHHHHTTSC--------CSEEEECSSCHHHHHHHHHHH
T ss_pred EEEECC--EEEehhHHHHHHcCHHHHHHHcCC--------CCEEEeCCCCHHHHHHHHHhh
Confidence 455664 6777665555 468888887642 4678886 7899999988765
No 31
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=29.35 E-value=89 Score=19.33 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=37.4
Q ss_pred EEEEEcCCceEEEEeccCC--CCHHHHHHHHHHHHhccccCCCceEeeC-cHHHHHHHHHhh
Q 043356 19 FVVYVGEEMRRFVIPLSYL--KDPTFQKLLEKAAEEYMFSRESGIVLPC-AESTFRRFLNLM 77 (79)
Q Consensus 19 ~~VyVG~e~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~G~L~iPC-~~~~Fe~vl~~l 77 (79)
+.+.||+ ++|-+.-..| ..|.|++++...-.|- -.....|.|+. +...|+.++..+
T Consensus 50 v~l~v~~--~~f~aHk~vLaa~S~yF~~mf~~~~~e~-e~~~~~I~l~~v~~~~f~~lL~fi 108 (144)
T 2ppi_A 50 AHLVLDG--EEIPVQKNILAAASPYIRTKLNYNPPKD-DGSTYKIELEGISVMVMREILDYI 108 (144)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHHHCC------CCCEEECCSSCHHHHHHHHHHH
T ss_pred eEEEECC--EEEehHHHHHHHcCHHHHHHHcCCCccc-cCCCcEEEeCCCCHHHHHHHHHHH
Confidence 3455664 7887777766 4899999997532110 02346789984 889999998765
No 32
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=29.05 E-value=7.5 Score=22.98 Aligned_cols=19 Identities=21% Similarity=0.473 Sum_probs=17.8
Q ss_pred cCCCCHHHHHHHHHHHHhc
Q 043356 35 SYLKDPTFQKLLEKAAEEY 53 (79)
Q Consensus 35 ~yL~hP~F~~LL~~aeeEf 53 (79)
.||+.--|++++.|+.+||
T Consensus 32 ~yLsdedF~~vFgmsr~eF 50 (68)
T 1qzp_A 32 RHLSAEDFSRVFAMSPEEF 50 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 6999999999999999997
No 33
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=28.90 E-value=36 Score=17.01 Aligned_cols=13 Identities=15% Similarity=0.450 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhcc
Q 043356 42 FQKLLEKAAEEYM 54 (79)
Q Consensus 42 F~~LL~~aeeEfG 54 (79)
..+|.+.-||+||
T Consensus 18 l~eLvk~lEe~fG 30 (30)
T 1zav_U 18 LAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 4678888889987
No 34
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=27.63 E-value=60 Score=22.65 Aligned_cols=61 Identities=16% Similarity=0.205 Sum_probs=42.9
Q ss_pred CCceEEEEEcCCceEEEEeccCCC-CH--HHHHHHHHHHHhcc--ccCCCceEeeCcHHHHHHHHHhhc
Q 043356 15 PKGHFVVYVGEEMRRFVIPLSYLK-DP--TFQKLLEKAAEEYM--FSRESGIVLPCAESTFRRFLNLMD 78 (79)
Q Consensus 15 pkG~~~VyVG~e~~RfvVp~~yL~-hP--~F~~LL~~aeeEfG--~~~~G~L~iPC~~~~Fe~vl~~l~ 78 (79)
+...+.+.||. .||.+..+-|. +| +|..|.... .++. .+.+|.+-|-.|...|++||..+.
T Consensus 10 ~~~~V~LNVGG--~~F~Tt~sTL~r~PdS~L~~lfs~~-~~~~~~~De~geyFIDRDP~~F~~ILnyLR 75 (202)
T 3drx_A 10 VSKWVRLNVGG--TYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLR 75 (202)
T ss_dssp CCCEEEEEETT--EEEEEETTGGGSCTTSSTHHHHSCC-CC----BCTTCCEEECSCSTTHHHHHHHHH
T ss_pred CCCEEEEEECC--EEEEEeHHHHhCCCcchHHHHhcCc-cccCcccCCCccEEecCChHHHHHHHHHhc
Confidence 44577889995 99999987774 34 566664211 1232 345699999999999999998764
No 35
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=27.62 E-value=9.6 Score=22.52 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=18.7
Q ss_pred ccCCCCHHHHHHHHHHHHhcc
Q 043356 34 LSYLKDPTFQKLLEKAAEEYM 54 (79)
Q Consensus 34 ~~yL~hP~F~~LL~~aeeEfG 54 (79)
-.||+.--|++++.++.+||-
T Consensus 30 E~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 30 EIYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGGSCHHHHHHHTSSCHHHHT
T ss_pred HhhCCHHHHHHHHCcCHHHHH
Confidence 379999999999999999983
No 36
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=27.35 E-value=44 Score=20.45 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=33.3
Q ss_pred EEEEEcCCceEEEEeccCC--CCHHHHHHHHHHHHhccccCCCceEee-CcHHHHHHHHHhh
Q 043356 19 FVVYVGEEMRRFVIPLSYL--KDPTFQKLLEKAAEEYMFSRESGIVLP-CAESTFRRFLNLM 77 (79)
Q Consensus 19 ~~VyVG~e~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~G~L~iP-C~~~~Fe~vl~~l 77 (79)
+.+.||+ ++|-+.-..| ..|.|++++.... ...|.|+ .+...|+.++..+
T Consensus 28 v~l~v~~--~~f~aHk~vLaa~S~yF~~mf~~~~-------~~~i~l~~~~~~~f~~lL~fi 80 (135)
T 2yy9_A 28 ATLDVGG--LVFKAHWSVLACCSHFFQRIYGDGT-------GGSVVLPAGFAEIFGLLLDFF 80 (135)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHTCC-----------CCEEECGGGHHHHHHHHHHH
T ss_pred eEEEECC--EEEehHHHHHHHhCHHHHHHHcCCC-------CCeEEeCCCCHHHHHHHHHHH
Confidence 3455664 7777776665 4788988876432 4678888 5788999988754
No 37
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=24.50 E-value=17 Score=23.89 Aligned_cols=28 Identities=32% Similarity=0.492 Sum_probs=17.0
Q ss_pred CCceEEEEEcCCceEEE----------EeccCCCCHHHH
Q 043356 15 PKGHFVVYVGEEMRRFV----------IPLSYLKDPTFQ 43 (79)
Q Consensus 15 pkG~~~VyVG~e~~Rfv----------Vp~~yL~hP~F~ 43 (79)
..|++|+.|-. +-+|+ +|+-+||.|+-+
T Consensus 86 ~QGYfPlL~~~-~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T 1w8x_N 86 KQGYFPLLVPG-RAKFVARHLGSGKKSVPLFFLNFTIAQ 123 (126)
T ss_dssp CCSSCCEEECC-SSSSEEEEEEEESSCCCCSCCC-----
T ss_pred Ccccceeeccc-hhhhhhhhhcCCCcceeeEEEeceeee
Confidence 57999999853 44444 688889888644
No 38
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=23.59 E-value=44 Score=25.47 Aligned_cols=18 Identities=22% Similarity=0.475 Sum_probs=13.7
Q ss_pred CCCHHHHHHHHHHH-Hhcc
Q 043356 37 LKDPTFQKLLEKAA-EEYM 54 (79)
Q Consensus 37 L~hP~F~~LL~~ae-eEfG 54 (79)
+.||-|++.|.+.+ +.||
T Consensus 416 iAhpdfr~~L~~~a~~~~~ 434 (434)
T 3eh7_A 416 IAHPDFREELTKHLRKRFG 434 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHC
T ss_pred CCCCCcHHHHHHHHHHhhC
Confidence 99999999886644 4465
No 39
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=23.43 E-value=59 Score=19.82 Aligned_cols=52 Identities=21% Similarity=0.278 Sum_probs=35.5
Q ss_pred EEEEEcCCceEEEEeccCC--CCHHHHHHHHHHHHhccccCCCceEee--CcHHHHHHHHHhh
Q 043356 19 FVVYVGEEMRRFVIPLSYL--KDPTFQKLLEKAAEEYMFSRESGIVLP--CAESTFRRFLNLM 77 (79)
Q Consensus 19 ~~VyVG~e~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~G~L~iP--C~~~~Fe~vl~~l 77 (79)
+.+.||+ ++|-+.-..| ..|.|++++... +.....+.|| -+...|+.++..+
T Consensus 39 v~l~v~~--~~f~aHk~vLaa~S~yF~~~f~~~-----~~e~~~i~l~~~v~~~~~~~lL~~~ 94 (138)
T 2z8h_A 39 VTVLVEG--QRFRAHRSVLAACSSYFHSRIVGQ-----TDAELTVTLPEEVTVKGFEPLIQFA 94 (138)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHTTC-----CCTTEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECC--EEEechHHHHHHcCHHHHHHHhcC-----CCCCceEEeCCCCCHHHHHHHHHHh
Confidence 3455664 7777777666 579999998642 2223568885 6788899888654
No 40
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=22.69 E-value=38 Score=22.70 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=27.0
Q ss_pred CCCCCCCceEEEEEcCCceEEEEeccCCCCHH
Q 043356 10 GVRRAPKGHFVVYVGEEMRRFVIPLSYLKDPT 41 (79)
Q Consensus 10 ~~~~vpkG~~~VyVG~e~~RfvVp~~yL~hP~ 41 (79)
-...+|.|-+.+.--+.+.+|.||.-.++.|.
T Consensus 84 AgItvp~gdL~~cYDe~G~~Y~LP~yvls~P~ 115 (137)
T 2ksn_A 84 ANITLPHGALTECYDELGNRYQLPVYCLAPPI 115 (137)
T ss_dssp HSCBCSSCCSSEEEETTTEEEECCGGGTCCST
T ss_pred cCCcccCCcHHHHHhccCCccCCCeeEeeCCc
Confidence 34578999999866777899999999999985
No 41
>1zo0_A ODC-AZ, ornithine decarboxylase antizyme; ornithine decarboxylase inhibitor, lyase inhibitor; NMR {Rattus norvegicus} SCOP: d.108.1.7
Probab=21.94 E-value=48 Score=21.72 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=26.0
Q ss_pred EEEEEcCCceEEE-EeccCC---CCHHHHHHHHHHHHhccccC
Q 043356 19 FVVYVGEEMRRFV-IPLSYL---KDPTFQKLLEKAAEEYMFSR 57 (79)
Q Consensus 19 ~~VyVG~e~~Rfv-Vp~~yL---~hP~F~~LL~~aeeEfG~~~ 57 (79)
-+|..|+ .-|+ ||..-+ +--.|..|||-|||..+.++
T Consensus 38 ~~Vl~~~--~Lyv~iP~~~~~~gsKe~fv~LLEfAEe~L~~~~ 78 (126)
T 1zo0_A 38 RAVWNGG--GLYIELPAGPLPEGSKDSFAALLEFAEEQLRADH 78 (126)
T ss_dssp EEEEETT--EEEEECSSCCCSSCCSHHHHHHHHHHHHHHCCCC
T ss_pred EEEEeCC--eEEEEcCCccccccchHHHHHHHHHHHHhcCCCE
Confidence 3455543 5566 675443 56789999999999988764
No 42
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=21.32 E-value=39 Score=20.86 Aligned_cols=8 Identities=38% Similarity=1.319 Sum_probs=7.4
Q ss_pred eEEEEEcC
Q 043356 18 HFVVYVGE 25 (79)
Q Consensus 18 ~~~VyVG~ 25 (79)
|.+||||+
T Consensus 23 H~gIYvGd 30 (125)
T 2lkt_A 23 HWALYIGD 30 (125)
T ss_dssp EEEEEEET
T ss_pred EEEEEeCC
Confidence 89999997
No 43
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=21.13 E-value=40 Score=17.21 Aligned_cols=16 Identities=25% Similarity=0.546 Sum_probs=12.6
Q ss_pred CCCCHHHHHHHHHHHH
Q 043356 36 YLKDPTFQKLLEKAAE 51 (79)
Q Consensus 36 yL~hP~F~~LL~~aee 51 (79)
.++.|+|+.||.-...
T Consensus 9 iissplfktllsavgs 24 (33)
T 1xc0_A 9 IISSPLFKTLLSAVGS 24 (33)
T ss_dssp HTTTTTHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHH
Confidence 4689999999986543
No 44
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Probab=20.99 E-value=68 Score=19.68 Aligned_cols=41 Identities=15% Similarity=0.341 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHH------HhccccCC-CceEee--CcHHHHHHHHHhh
Q 043356 37 LKDPTFQKLLEKAA------EEYMFSRE-SGIVLP--CAESTFRRFLNLM 77 (79)
Q Consensus 37 L~hP~F~~LL~~ae------eEfG~~~~-G~L~iP--C~~~~Fe~vl~~l 77 (79)
+++|.|++-+-..+ ...||... +.+.+| ++....+++...|
T Consensus 46 ~~N~~f~~~v~~~~G~~e~L~a~GF~~~~~~l~lp~~~~~~~l~~~~d~l 95 (99)
T 2ccq_A 46 IGNTAFSTRLLPVRGAVECLFEMGFEEGETHLIFPKKASVEQLQKIRDLI 95 (99)
T ss_dssp TTCHHHHHHTTTSTTHHHHHHHHTCEECSSEEECCTTSCHHHHHHHHHHH
T ss_pred cCCHHHHHHhcCCccHHHHHHHccceeCCCeeecCCCCCHHHHHHHHHHH
Confidence 67888888554322 34699765 779997 5666666666554
Done!