BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043360
(1108 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 142/642 (22%), Positives = 243/642 (37%), Gaps = 118/642 (18%)
Query: 313 EVKVVRSGREQLIAVSNLLKGDVVRLAKGDRVPGDGLVVNSDGLMLDDV-LNSEIDPD-R 370
+ V+R G + I L+ GD+V + GDRVP D ++ + G +D+ L E +P R
Sbjct: 178 QATVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQGRKVDNSSLTGESEPQTR 237
Query: 371 NP------------FLFSGSKVMEGHGTMLLISVGGNIASGQV--LRSNXXXXXXXXXXX 416
+P F + +EG L+++ G G++ L S
Sbjct: 238 SPECTHESPLETRNIAFFSTMCLEGTAQGLVVNTGDRTIIGRIASLASGVENEKTPIAIE 297
Query: 417 XXXXXXXWRKHSGDD-HELPELKGNVSVGTVMKIFERFLLKPQGKISILVSALTVVAIAV 475
+H D L L G M I FL +V + +V V
Sbjct: 298 I--------EHFVDIIAGLAILFGATFFIVAMCIGYTFL-------RAMVFFMAIVVAYV 342
Query: 476 QHGMPFVITVSLFFWNDKLLINHHAKPQNLSAGATMGIASVICIDVTGGLVCNRVDVSKF 535
G+ +TV L K L + + +NL A T+G SVIC D TG L NR+ VS
Sbjct: 343 PEGLLATVTVCLSL-TAKRLASKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTVSHL 401
Query: 536 C----IGEKDVNN-------DVASEINQAVLQALERGIGASVLVPEISLWPTTDWLVSWA 584
I D D +SE +A+ + L A+ + ++ P +V
Sbjct: 402 WFDNHIHSADTTEDQSGQTFDQSSETWRALCRVLTLCNRAAFKSGQDAV-PVPKRIVIGD 460
Query: 585 KSRSLNVEFVDQNL-SVLEHRK---------LSSNNKV-CGVLVKINGGDEDKIMHMHWS 633
S + ++F + L + + +R+ +S NK + + D ++ M
Sbjct: 461 ASETALLKFSELTLGNAMGYRERFPKVCEIPFNSTNKFQLSIHTLEDPRDPRHVLVMK-- 518
Query: 634 GTASTILNMCSYYYDSEGKSFEIKGE--------KRRFQKLIKDMEDSGLRPIAFA---- 681
G +L CS S IKG+ + FQ + G R + F
Sbjct: 519 GAPERVLERCS--------SILIKGQELPLDEQWREAFQTAYLSLGGLGERVLGFCQLYL 570
Query: 682 ---------CGQTEVSEIKENGLHLLALAGL----REEIKSTVEALRNAGVRIILVSEDE 728
E +GL L + R + V R AG+R+I+V+ D
Sbjct: 571 SEKDYPPGYAFDVEAMNFPTSGLSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDH 630
Query: 729 LLAVTEVACELGNF----------------------RPESNDIALEGEQFRELNSTERMA 766
+ +A +G R ++ + G Q ++++ +E +
Sbjct: 631 PITAKAIAASVGIISEGSETVEDIAARLRVPVDQVNRKDARACVINGMQLKDMDPSELVE 690
Query: 767 KLDSMTLM--GSCLADDKLLLVQSVKEKGHVVAFFGGSSTRDTPALKEADVGITEENKCT 824
L + M KL++V+S + G +VA G D+PALK+AD+G+ +
Sbjct: 691 ALRTHPEMVFARTSPQQKLVIVESCQRLGAIVA-VTGDGVNDSPALKKADIGVAMGIAGS 749
Query: 825 EMARECSDIVI--SAVGSLLPILKLGRCAYCNIQKFTKLQLT 864
+ A+ +D+++ S++ ++ GR + N++K LT
Sbjct: 750 DAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLT 791
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 130/557 (23%), Positives = 218/557 (39%), Gaps = 93/557 (16%)
Query: 313 EVKVVRSGREQLIAVSNLLKGDVVRLAKGDRVPGDGLVVNSDGLMLDD-VLNSEIDP-DR 370
+ KV+R G+ + L+ GD+V + GD +P D ++ D L +D L E P +
Sbjct: 131 KTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTK 190
Query: 371 NPF--LFSGSKVMEGHGTMLLISVGGNIASGQVLRSNXXXXXXXXXXXXXXXXXXWRKHS 428
+P +FSGS +G ++I+ G + G+
Sbjct: 191 HPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDST-----------------NQV 233
Query: 429 GDDHELPELKGN-----VSVGTVMKIFERFLLKPQGKISILVSALTVVAIAVQHGMPFVI 483
G ++ GN +++G V++I + ++ + + + L ++ + MP V+
Sbjct: 234 GHFQKVLTAIGNFCICSIAIGMVIEIIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVL 293
Query: 484 TVSLFFWNDKLLINHHAKPQNLSAGATMGIASVICIDVTGGLVCNRVDVSK-----FCIG 538
+V++ + +L A + ++A M V+C D TG L N++ V K FC G
Sbjct: 294 SVTMAIGSHRLS-QQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKG 352
Query: 539 -EKD---VNNDVASEI-NQAVLQALERGIGASVLVPEISLWPTTDWLVSWAKSRSLNVEF 593
EKD + +AS + NQ + A G+ A P A++ V F
Sbjct: 353 VEKDQVLLFAAMASRVENQDAIDAAMVGMLAD---------PKE------ARAGIREVHF 397
Query: 594 VDQNLSVLEHRKLSSNNKVCGVLVKINGGDEDKIMHMHWSGTASTILNMCSYYYDSEGKS 653
+ N ++ R L I+G H G IL + D K
Sbjct: 398 LPFN--PVDKRT---------ALTYIDGSGN---WHRVSKGAPEQILELAKASNDLSKKV 443
Query: 654 FEIKGEKRRFQKLIKDMEDSGLRPIAFACGQTEVSEIKENGLHLLALAGL-------REE 706
I I + GLR +A A Q + KE+ GL R +
Sbjct: 444 LSI----------IDKYAERGLRSLAVAR-QVVPEKTKESPGAPWEFVGLLPLFDPPRHD 492
Query: 707 IKSTVEALRNAGVRIILVSEDELLAVTEVACELG---NFRPESNDIALEGE-QFRELNST 762
T+ N GV + +++ D+L E LG N P S + + +
Sbjct: 493 SAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGTHKDANLASIPVE 552
Query: 763 ERMAKLDSMTLMGSCLADDKLLLVQSVKEKGHVVAFFGGSSTRDTPALKEADVGITEENK 822
E + K D + K +V+ ++E+ H+V G D PALK+AD+GI +
Sbjct: 553 ELIEKADGF---AGVFPEHKYEIVKKLQERKHIVGM-TGDGVNDAPALKKADIGIAVAD- 607
Query: 823 CTEMARECSDIVISAVG 839
T+ AR SDIV++ G
Sbjct: 608 ATDAARGASDIVLTEPG 624
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 129/627 (20%), Positives = 236/627 (37%), Gaps = 94/627 (14%)
Query: 316 VVRSGREQLIAVSNLLKGDVVRLAKGDRVPGDGLVVNSDGLMLDDV-LNSEIDPDRNPFL 374
V+R+G + I ++ GD+V + GDR+P D +++++G +D+ L E +P
Sbjct: 146 VIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPD 205
Query: 375 FSGSKVMEGHGTMLLIS--VGGNIASGQVLRSNXXXXXXXXXXXXXXXXXXWRKHSGDDH 432
F+ +E + V G A G V+ + + +
Sbjct: 206 FTNENPLETRNIAFFSTNCVEGT-ARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIE 264
Query: 433 ELPELKGNVSVGTVMKIFERFLLKPQGKISILVSALTVVAIAVQHGMPFVITVSLFFWND 492
+ V+V + F L+ + ++ + ++ V G+ +TV L
Sbjct: 265 HFIHIITGVAVFLGVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTL-TA 323
Query: 493 KLLINHHAKPQNLSAGATMGIASVICIDVTGGLVCNRVDVSKFC----IGEKDVNND--- 545
K + + +NL A T+G S IC D TG L NR+ V+ I E D +
Sbjct: 324 KRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWSDNQIHEADTTENQSG 383
Query: 546 ---------------VASEINQAVLQA-------LERGIGASVLVPEISLWPTTDWLVSW 583
+A N+AV QA L+R + E +L +
Sbjct: 384 VSFDKTSATWLALSRIAGLCNRAVFQANQENLPILKRAVAGDA--SESALLKCIELCCGS 441
Query: 584 AKSRSLNVEFVDQNLSVLEHRKLSSNNKVCGVLVKINGGDEDKIMHMHWSGTASTILNMC 643
K E ++ ++E S+N + N + ++ M G IL+ C
Sbjct: 442 VK------EMRERYTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLLVM--KGAPERILDRC 493
Query: 644 SYYYDSEGKSFEIKGE-KRRFQKLIKDMEDSGLRPIAFACGQTEVSEIKENGLHL----- 697
S GK + E K FQ ++ G R + F C E G
Sbjct: 494 SSIL-IHGKEQPLDEELKDAFQNAYLELGGLGERVLGF-CHLFLPDEQFPEGFQFDTDDV 551
Query: 698 ------LALAGL-------REEIKSTVEALRNAGVRIILVSEDELLAVTEVACELGNFRP 744
L GL R + V R+AG+++I+V+ D + +A +G
Sbjct: 552 NFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIIS- 610
Query: 745 ESN----DIA-------------------LEGEQFRELNSTE--RMAKLDSMTLMGSCLA 779
E N DIA + G +++ S + + K + +
Sbjct: 611 EGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSP 670
Query: 780 DDKLLLVQSVKEKGHVVAFFGGSSTRDTPALKEADVGITEENKCTEMARECSDIVI--SA 837
KL++V+ + +G +VA G D+PA K+AD+G+ ++++++ +D+++
Sbjct: 671 QQKLIIVEGCQRQGAIVAV-TGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDN 729
Query: 838 VGSLLPILKLGRCAYCNIQKFTKLQLT 864
S++ ++ GR + N++K LT
Sbjct: 730 FASIVTGVEEGRLIFDNLKKSIAYTLT 756
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 124/621 (19%), Positives = 240/621 (38%), Gaps = 82/621 (13%)
Query: 316 VVRSGREQLIAVSNLLKGDVVRLAKGDRVPGDGLVVNSDGLMLDDV-LNSEIDPDRNPFL 374
V+R G + I ++ GD+V + GDR+P D ++++ G +D+ L E +P
Sbjct: 176 VIRDGEKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHGCKVDNSSLTGESEPQTRSPE 235
Query: 375 FSGSKVMEGHGTMLLIS--VGGNIASGQVLRSNXXXXXXXXXXXXXXXXXXWRKHSGDDH 432
FS +E + V G A G V+ + + +
Sbjct: 236 FSSENPLETRNIAFFSTNCVEGT-ARGVVVYTGDRTVMGRIATLASGLEVGRTPIAIEIE 294
Query: 433 ELPELKGNVSVGTVMKIFERFLLKPQGKISILVSALTVVAIAVQHGMPFVITVSLFFWND 492
+ V+V + F L+ + ++ + ++ V G+ +TV L
Sbjct: 295 HFIHIITGVAVFLGVSFFILSLILGYSWLEAVIFLIGIIVANVPEGLLATVTVCLTL-TA 353
Query: 493 KLLINHHAKPQNLSAGATMGIASVICIDVTGGLVCNRVDVSKFC----IGEKDVNND--- 545
K + + +NL A T+G S IC D TG L NR+ V+ I E D +
Sbjct: 354 KRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTENQSG 413
Query: 546 ---------------VASEINQAVLQALERGIGASVLVPEISLWPTTDWLVSWAKSRSLN 590
+A+ N+AV QA + + +L ++ + L+ + +
Sbjct: 414 AAFDKTSATWSALSRIAALCNRAVFQAGQDNV--PILKRSVAGDASESALLKCIELCCGS 471
Query: 591 VEFV-DQNLSVLEHRKLSSNNKVCGVLVKINGGDEDKIMHMHWSGTASTILNMCSYYYDS 649
V+ + D+N ++E S+N + + ++ M G IL+ CS +
Sbjct: 472 VQGMRDRNPKIVEIPFNSTNKYQLSIHENEKSSESRYLLVMK--GAPERILDRCSTILLN 529
Query: 650 EGKSFEIKGEKRRFQKLIKDMEDSGLRPIAFACGQTEVSEIKENGLHL------------ 697
+ + K FQ ++ G R + F + E K N +
Sbjct: 530 GAEEPLKEDMKEAFQNAYLELGGLGERVLGFC--HFALPEDKYNEGYPFDADEPNFPTTD 587
Query: 698 LALAGL-------REEIKSTVEALRNAGVRIILVSEDELLAVTEVA-------------- 736
L GL R + V R+AG+++I+V+ D + +A
Sbjct: 588 LCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETIE 647
Query: 737 -------CELGNFRP-ESNDIALEGEQFRELNSTERMAKL---DSMTLMGSCLADDKLLL 785
+G P ++ + G ++L STE + + + + KL++
Sbjct: 648 DIAARLNIPIGQVNPRDAKACVVHGSDLKDL-STEVLDDILHYHTEIVFARTSPQQKLII 706
Query: 786 VQSVKEKGHVVAFFGGSSTRDTPALKEADVGITEENKCTEMARECSDIVI--SAVGSLLP 843
V+ + +G +VA G D+PALK+AD+G+ ++++++ +D+++ S++
Sbjct: 707 VEGCQRQGAIVAV-TGDGVNDSPALKKADIGVAMGISGSDVSKQAADMILLDDNFASIVT 765
Query: 844 ILKLGRCAYCNIQKFTKLQLT 864
++ GR + N++K LT
Sbjct: 766 GVEEGRLIFDNLKKSIAYTLT 786
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 128/627 (20%), Positives = 235/627 (37%), Gaps = 94/627 (14%)
Query: 316 VVRSGREQLIAVSNLLKGDVVRLAKGDRVPGDGLVVNSDGLMLDDV-LNSEIDPDRNPFL 374
V+R+G + I ++ GD+V + GDR+P D +++++G +D+ L E +P
Sbjct: 140 VIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPD 199
Query: 375 FSGSKVMEGHGTMLLIS--VGGNIASGQVLRSNXXXXXXXXXXXXXXXXXXWRKHSGDDH 432
F+ +E + V G A G V+ + + +
Sbjct: 200 FTNENPLETRNIAFFSTNCVEGT-ARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIE 258
Query: 433 ELPELKGNVSVGTVMKIFERFLLKPQGKISILVSALTVVAIAVQHGMPFVITVSLFFWND 492
+ V+V + F L+ + ++ + ++ V G+ +TV L
Sbjct: 259 HFIHIITGVAVFLGVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTL-TA 317
Query: 493 KLLINHHAKPQNLSAGATMGIASVICIDVTGGLVCNRVDVSKFC----IGEKDVNND--- 545
K + + +NL A T+G S IC TG L NR+ V+ I E D +
Sbjct: 318 KRMARKNCLVKNLEAVETLGSTSTICSXKTGTLTQNRMTVAHMWSDNQIHEADTTENQSG 377
Query: 546 ---------------VASEINQAVLQA-------LERGIGASVLVPEISLWPTTDWLVSW 583
+A N+AV QA L+R + E +L +
Sbjct: 378 VSFDKTSATWLALSRIAGLCNRAVFQANQENLPILKRAVAGDA--SESALLKCIELCCGS 435
Query: 584 AKSRSLNVEFVDQNLSVLEHRKLSSNNKVCGVLVKINGGDEDKIMHMHWSGTASTILNMC 643
K E ++ ++E S+N + N + ++ M G IL+ C
Sbjct: 436 VK------EMRERYTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLLVM--KGAPERILDRC 487
Query: 644 SYYYDSEGKSFEIKGE-KRRFQKLIKDMEDSGLRPIAFACGQTEVSEIKENGLHL----- 697
S GK + E K FQ ++ G R + F C E G
Sbjct: 488 SSIL-IHGKEQPLDEELKDAFQNAYLELGGLGERVLGF-CHLFLPDEQFPEGFQFDTDDV 545
Query: 698 ------LALAGL-------REEIKSTVEALRNAGVRIILVSEDELLAVTEVACELGNFRP 744
L GL R + V R+AG+++I+V+ D + +A +G
Sbjct: 546 NFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIIS- 604
Query: 745 ESN----DIA-------------------LEGEQFRELNSTE--RMAKLDSMTLMGSCLA 779
E N DIA + G +++ S + + K + +
Sbjct: 605 EGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSP 664
Query: 780 DDKLLLVQSVKEKGHVVAFFGGSSTRDTPALKEADVGITEENKCTEMARECSDIVI--SA 837
KL++V+ + +G +VA G D+PA K+AD+G+ ++++++ +D+++
Sbjct: 665 QQKLIIVEGCQRQGAIVAV-TGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDN 723
Query: 838 VGSLLPILKLGRCAYCNIQKFTKLQLT 864
S++ ++ GR + N++K LT
Sbjct: 724 FASIVTGVEEGRLIFDNLKKSIAYTLT 750
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/244 (20%), Positives = 104/244 (42%), Gaps = 10/244 (4%)
Query: 692 ENGLHLLALAGL----REEIKSTVEALRNAGVRIILVSEDELLAVTEVACELGNF--RPE 745
E L + + G+ R+E+ +++ R+AG+R+I+++ D + +G F E
Sbjct: 588 ETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEE 647
Query: 746 SNDIALEGEQFRELNSTERMAKLDSMTLMGSCLADDKLLLVQSVKEKGHVVAFFGGSSTR 805
D A G +F +L E+ K +V+ ++ + A G
Sbjct: 648 VADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITA-MTGDGVN 706
Query: 806 DTPALKEADVGITEENKCTEMARECSDIVISA--VGSLLPILKLGRCAYCNIQKFTKLQL 863
D PALK+A++GI + T +A+ S++V++ +++ ++ GR Y N+++F + +
Sbjct: 707 DAPALKKAEIGIAMGSG-TAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLI 765
Query: 864 TGCASGXXXXXXXXXXXEESPITSIQLIWVYSIMYMLGGLIMRMEFKDQEPVTNPPARRT 923
+ + +QL+WV + L + D + + PP
Sbjct: 766 SSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPK 825
Query: 924 KSLL 927
+ L+
Sbjct: 826 EPLI 829
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 107/262 (40%), Gaps = 39/262 (14%)
Query: 315 KVVRSGRE--QLIAVSNLLKGDVVRLAKGDRVPGDG--LVVNSDGLMLDD-VLNSE---- 365
KV R+ R+ Q I +++ GD+V +A GD+VP D L + S L +D +L E
Sbjct: 128 KVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSV 187
Query: 366 ------------IDPDRNPFLFSGSKVMEGHGTMLLISVGGNIASGQVLRSNXXXXXXXX 413
++ D+ LFSG+ + G ++ + G + G++
Sbjct: 188 IKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKI--------RDQM 239
Query: 414 XXXXXXXXXXWRKHSGDDHELPELKGNVSVGTVMKIFERFLLKP-------QGKISILVS 466
+K +L ++ + V + F P +G I
Sbjct: 240 AATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFN-DPVHGGSWIRGAIYYFKI 298
Query: 467 ALTVVAIAVQHGMPFVITVSLFFWNDKLLINHHAKPQNLSAGATMGIASVICIDVTGGLV 526
A+ + A+ G+P VIT L + + +A ++L + T+G SVIC TG L
Sbjct: 299 AVALAVAAIPEGLPAVITTCLAL-GTRRMAKKNAIVRSLPSVETLGCTSVICSXKTGTLT 357
Query: 527 CNRVDVSKFCIGEKDVNNDVAS 548
N++ V K I +K V+ D S
Sbjct: 358 TNQMSVCKMFIIDK-VDGDFCS 378
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/244 (20%), Positives = 104/244 (42%), Gaps = 10/244 (4%)
Query: 692 ENGLHLLALAGL----REEIKSTVEALRNAGVRIILVSEDELLAVTEVACELGNF--RPE 745
E L + + G+ R+E+ +++ R+AG+R+I+++ D + +G F E
Sbjct: 589 ETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEE 648
Query: 746 SNDIALEGEQFRELNSTERMAKLDSMTLMGSCLADDKLLLVQSVKEKGHVVAFFGGSSTR 805
D A G +F +L E+ K +V+ ++ + A G
Sbjct: 649 VADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITA-MTGDGVN 707
Query: 806 DTPALKEADVGITEENKCTEMARECSDIVISA--VGSLLPILKLGRCAYCNIQKFTKLQL 863
D PALK+A++GI + T +A+ S++V++ +++ ++ GR Y N+++F + +
Sbjct: 708 DAPALKKAEIGIAMGSG-TAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLI 766
Query: 864 TGCASGXXXXXXXXXXXEESPITSIQLIWVYSIMYMLGGLIMRMEFKDQEPVTNPPARRT 923
+ + +QL+WV + L + D + + PP
Sbjct: 767 SSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPK 826
Query: 924 KSLL 927
+ L+
Sbjct: 827 EPLI 830
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 108/262 (41%), Gaps = 39/262 (14%)
Query: 315 KVVRSGRE--QLIAVSNLLKGDVVRLAKGDRVPGDG--LVVNSDGLMLDD-VLNSE---- 365
KV R+ R+ Q I +++ GD+V +A GD+VP D L + S L +D +L E
Sbjct: 129 KVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSV 188
Query: 366 ------------IDPDRNPFLFSGSKVMEGHGTMLLISVGGNIASGQVLRSNXXXXXXXX 413
++ D+ LFSG+ + G ++ + G + G++
Sbjct: 189 IKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKI--------RDQM 240
Query: 414 XXXXXXXXXXWRKHSGDDHELPELKGNVSVGTVMKIFERFLLKP-------QGKISILVS 466
+K +L ++ + V + F P +G I
Sbjct: 241 AATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFN-DPVHGGSWIRGAIYYFKI 299
Query: 467 ALTVVAIAVQHGMPFVITVSLFFWNDKLLINHHAKPQNLSAGATMGIASVICIDVTGGLV 526
A+ + A+ G+P VIT L + + +A ++L + T+G SVIC D TG L
Sbjct: 300 AVALAVAAIPEGLPAVITTCLAL-GTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLT 358
Query: 527 CNRVDVSKFCIGEKDVNNDVAS 548
N++ V K I +K V+ D S
Sbjct: 359 TNQMSVCKMFIIDK-VDGDFCS 379
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/244 (20%), Positives = 104/244 (42%), Gaps = 10/244 (4%)
Query: 692 ENGLHLLALAGL----REEIKSTVEALRNAGVRIILVSEDELLAVTEVACELGNF--RPE 745
E L + + G+ R+E+ +++ R+AG+R+I+++ D + +G F E
Sbjct: 588 ETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEE 647
Query: 746 SNDIALEGEQFRELNSTERMAKLDSMTLMGSCLADDKLLLVQSVKEKGHVVAFFGGSSTR 805
D A G +F +L E+ K +V+ ++ + A G
Sbjct: 648 VADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITA-MTGDGVN 706
Query: 806 DTPALKEADVGITEENKCTEMARECSDIVISA--VGSLLPILKLGRCAYCNIQKFTKLQL 863
D PALK+A++GI + T +A+ S++V++ +++ ++ GR Y N+++F + +
Sbjct: 707 DAPALKKAEIGIAMGSG-TAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLI 765
Query: 864 TGCASGXXXXXXXXXXXEESPITSIQLIWVYSIMYMLGGLIMRMEFKDQEPVTNPPARRT 923
+ + +QL+WV + L + D + + PP
Sbjct: 766 SSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPK 825
Query: 924 KSLL 927
+ L+
Sbjct: 826 EPLI 829
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 108/262 (41%), Gaps = 39/262 (14%)
Query: 315 KVVRSGRE--QLIAVSNLLKGDVVRLAKGDRVPGDG--LVVNSDGLMLDD-VLNSE---- 365
KV R+ R+ Q I +++ GD+V +A GD+VP D L + S L +D +L E
Sbjct: 128 KVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSV 187
Query: 366 ------------IDPDRNPFLFSGSKVMEGHGTMLLISVGGNIASGQVLRSNXXXXXXXX 413
++ D+ LFSG+ + G ++ + G + G++
Sbjct: 188 IKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKI--------RDQM 239
Query: 414 XXXXXXXXXXWRKHSGDDHELPELKGNVSVGTVMKIFERFLLKP-------QGKISILVS 466
+K +L ++ + V + F P +G I
Sbjct: 240 AATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFN-DPVHGGSWIRGAIYYFKI 298
Query: 467 ALTVVAIAVQHGMPFVITVSLFFWNDKLLINHHAKPQNLSAGATMGIASVICIDVTGGLV 526
A+ + A+ G+P VIT L + + +A ++L + T+G SVIC D TG L
Sbjct: 299 AVALAVAAIPEGLPAVITTCLAL-GTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLT 357
Query: 527 CNRVDVSKFCIGEKDVNNDVAS 548
N++ V K I +K V+ D S
Sbjct: 358 TNQMSVCKMFIIDK-VDGDFCS 378
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/244 (20%), Positives = 103/244 (42%), Gaps = 10/244 (4%)
Query: 692 ENGLHLLALAGL----REEIKSTVEALRNAGVRIILVSEDELLAVTEVACELGNFRPESN 747
E L + + G+ R+E+ +++ R+AG+R+I+++ D + +G F +
Sbjct: 587 ETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENED 646
Query: 748 --DIALEGEQFRELNSTERMAKLDSMTLMGSCLADDKLLLVQSVKEKGHVVAFFGGSSTR 805
D A G +F +L E+ K +V+ ++ + A G
Sbjct: 647 VADRAYTGREFDDLPLAEQREACRRACCFARVEPTHKSKIVEYLQSFDEITA-MTGDGVN 705
Query: 806 DTPALKEADVGITEENKCTEMARECSDIVISA--VGSLLPILKLGRCAYCNIQKFTKLQL 863
D PALK+A++GI T +A+ S++V++ +++ ++ GR Y N+++F + +
Sbjct: 706 DAPALKKAEIGIA-MGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLI 764
Query: 864 TGCASGXXXXXXXXXXXEESPITSIQLIWVYSIMYMLGGLIMRMEFKDQEPVTNPPARRT 923
+ + +QL+WV + L + D + + PP
Sbjct: 765 SSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRTPK 824
Query: 924 KSLL 927
+ L+
Sbjct: 825 EPLI 828
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 81/377 (21%), Positives = 143/377 (37%), Gaps = 57/377 (15%)
Query: 200 EKVASAFGSHLEHGIQGDQLP---QPQIWNTIKPNHAREFFLFLLKASNNFNIXXXXXXX 256
E+ + FG G+ DQ+ + N + + + +L+ + +
Sbjct: 10 EECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVLEQFEDLLVRILLLAA 69
Query: 257 XXSFVTGTIEQGPKDGWHDGAAILIAVFVLLTF---PAVTNFRRARKLEK-----KQWEE 308
SFV E+G + + FV+L A+ + R E K++E
Sbjct: 70 CISFVLAWFEEG-----EETVTAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEP 124
Query: 309 KNKLEVKVVRSGRE--QLIAVSNLLKGDVVRLAKGDRVPGDG--LVVNSDGLMLDD-VLN 363
+ KV R+ R+ Q I +++ GD+V +A GD+VP D L + S L +D +L
Sbjct: 125 EMG---KVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSILT 181
Query: 364 SE----------------IDPDRNPFLFSGSKVMEGHGTMLLISVGGNIASGQVLRSNXX 407
E ++ D+ LFSG+ + G ++ + G G++
Sbjct: 182 GESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKAIGIVATTGVGTEIGKI------ 235
Query: 408 XXXXXXXXXXXXXXXXWRKHSGDDHELPELKGNVSVGTVMKIFERFLLKP-------QGK 460
+K +L ++ + V + F P +G
Sbjct: 236 --RDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFN-DPVHGGSWIRGA 292
Query: 461 ISILVSALTVVAIAVQHGMPFVITVSLFFWNDKLLINHHAKPQNLSAGATMGIASVICID 520
I A+ + A+ G+P VIT L + + +A ++L + T+G SVIC D
Sbjct: 293 IYYFKIAVALAVAAIPEGLPAVITTCLAL-GTRRMAKKNAIVRSLPSVETLGCTSVICSD 351
Query: 521 VTGGLVCNRVDVSKFCI 537
TG L N++ V K I
Sbjct: 352 KTGTLTTNQMSVCKMFI 368
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 113/291 (38%), Gaps = 48/291 (16%)
Query: 268 GPKDGWHDGAAILIA----------VFVLLTFPAVTNFRRARKLEKKQWEEKNKLEVK-- 315
GP +GAA+L A + LL AV F + + E K L +K
Sbjct: 122 GPIQFVMEGAAVLAAGLEDWVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAV 181
Query: 316 VVRSGREQLIAVSNLLKGDVVRLAKGDRVPGDGLVVNSDGLMLDD--VLNSE---IDPDR 370
V+R G + I ++ GD++++ +G +P DG +V D + D L E +D +
Sbjct: 182 VLRDGTLKEIEAPEVVPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVDKHK 241
Query: 371 NPFLFSGSKVMEGHGTMLLISVGGNIASGQVLRSNXXXXXXXXXXXXXXXXXXWRKHSGD 430
+F+ S V G +++ + G N G+ G
Sbjct: 242 GDQVFASSAVKRGEAFVVITATGDNTFVGRA------------------AALVNAASGGS 283
Query: 431 DHELPELKGNVSVGTVMKIFERFLL---------KPQGKISILVSALTVVAIAVQHGMPF 481
H L G +GT++ I F L + + IL L + I V G+P
Sbjct: 284 GHFTEVLNG---IGTILLILVIFTLLIVWVSSFYRSNPIVQILEFTLAITIIGVPVGLPA 340
Query: 482 VITVSLFFWNDKLLINHHAKPQNLSAGATMGIASVICIDVTGGLVCNRVDV 532
V+T ++ L A Q LSA ++ ++C D TG L N++ +
Sbjct: 341 VVTTTMAV-GAAYLAKKKAIVQKLSAIESLAGVEILCSDKTGTLTKNKLSL 390
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 4/157 (2%)
Query: 704 REEIKSTVEALRNAGVRIILVSEDELLAVTEVACELGNFRPESNDIALEGEQFRELNSTE 763
R + TV + G+ I +++ D + E + +LG N L ++ +E
Sbjct: 537 RHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIYNAERLGLGGGGDMPGSE 596
Query: 764 RMAKLDSMTLMGSCLADDKLLLVQSVKEKGHVVAFFGGSSTRDTPALKEADVGITEENKC 823
+++ K +V+ ++++G++VA G D P+LK+AD GI E
Sbjct: 597 VYDFVEAADGFAEVFPQHKYNVVEILQQRGYLVAM-TGDGVNDAPSLKKADTGIAVEG-S 654
Query: 824 TEMARECSDIVISA--VGSLLPILKLGRCAYCNIQKF 858
++ AR +DIV A +G+++ LK R + + +
Sbjct: 655 SDAARSAADIVFLAPGLGAIIDALKTSRQIFHRMYAY 691
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 38.9 bits (89), Expect = 0.018, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 63/139 (45%), Gaps = 8/139 (5%)
Query: 698 LALAGLREEIKSTVEALRNAGVRIILVSEDELLAVTEVAC-ELGNFRPESNDIALEGEQF 756
LAL L E K+ V RN V I+ D L + A EL + I G+ +
Sbjct: 113 LALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRXGIKVGXIT--GDNW 170
Query: 757 RELNSTERMAKLDSMTLMGSCLADDKLLLVQSVKEKGHVVAFFGGSSTRDTPALKEADVG 816
R + R LD ++ L K V+ ++ K VVAF G D PAL +AD+G
Sbjct: 171 RSAEAISRELNLD--LVIAEVLPHQKSEEVKKLQAK-EVVAFVG-DGINDAPALAQADLG 226
Query: 817 ITEENKCTEMARECSDIVI 835
I + +++A E DIV+
Sbjct: 227 IAVGSG-SDVAVESGDIVL 244
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 38.5 bits (88), Expect = 0.019, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 63/139 (45%), Gaps = 8/139 (5%)
Query: 698 LALAGLREEIKSTVEALRNAGVRIILVSEDELLAVTEVAC-ELGNFRPESNDIALEGEQF 756
LAL L E K+ V RN V I+ D L + A EL + I G+ +
Sbjct: 133 LALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMIT--GDNW 190
Query: 757 RELNSTERMAKLDSMTLMGSCLADDKLLLVQSVKEKGHVVAFFGGSSTRDTPALKEADVG 816
R + R LD ++ L K V+ ++ K VVAF G D PAL +AD+G
Sbjct: 191 RSAEAISRELNLD--LVIAEVLPHQKSEEVKKLQAK-EVVAFVG-DGINDAPALAQADLG 246
Query: 817 ITEENKCTEMARECSDIVI 835
I + +++A E DIV+
Sbjct: 247 IAVGSG-SDVAVESGDIVL 264
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 38.5 bits (88), Expect = 0.019, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 63/139 (45%), Gaps = 8/139 (5%)
Query: 698 LALAGLREEIKSTVEALRNAGVRIILVSEDELLAVTEVAC-ELGNFRPESNDIALEGEQF 756
LAL L E K+ V RN V I+ D L + A EL + I G+ +
Sbjct: 133 LALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMIT--GDNW 190
Query: 757 RELNSTERMAKLDSMTLMGSCLADDKLLLVQSVKEKGHVVAFFGGSSTRDTPALKEADVG 816
R + R LD ++ L K V+ ++ K VVAF G D PAL +AD+G
Sbjct: 191 RSAEAISRELNLD--LVIAEVLPHQKSEEVKKLQAK-EVVAFVG-DGINDAPALAQADLG 246
Query: 817 ITEENKCTEMARECSDIVI 835
I + +++A E DIV+
Sbjct: 247 IAVGSG-SDVAVESGDIVL 264
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 698 LALAGLREEIKSTVEALRNAGVRIILVSEDELLAVTEVAC-ELGNFRPESNDIALEGEQF 756
LAL L E K+ V RN V I+ D L + A EL + I G+ +
Sbjct: 427 LALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMIT--GDNW 484
Query: 757 RELNSTERMAKLDSMTLMGSCLADDKLLLVQSVKEKGHVVAFFGGSSTRDTPALKEADVG 816
R + R LD ++ L K V+ ++ K VVAF G D PAL +AD+G
Sbjct: 485 RSAEAISRELNLD--LVIAEVLPHQKSEEVKKLQAK-EVVAFVG-DGINDAPALAQADLG 540
Query: 817 ITEENKCTEMARECSDIVI 835
I +++A E DIV+
Sbjct: 541 IA-VGSGSDVAVESGDIVL 558
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 316 VVRSGREQLIAVSNLLKGDVVRLAKGDRVPGDGLVVNSDGLMLDDVLNSEIDP 368
V+R G+E + V + GD+V + G+++P DG+VV + + + +++ E P
Sbjct: 137 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVP 189
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 36.6 bits (83), Expect = 0.081, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 316 VVRSGREQLIAVSNLLKGDVVRLAKGDRVPGDGLVVNSDGLMLDDVLNSEIDP 368
V+R G+E + V + GD+V + G+++P DG+VV + + + +++ E P
Sbjct: 16 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVP 68
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 698 LALAGLREEIKSTVEALRNAGVRIILVSEDELLAVTEVAC-ELGNFRPESNDIALEGEQF 756
LAL L E K+ V RN V I+ D L + A EL + I G+ +
Sbjct: 505 LALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMIT--GDNW 562
Query: 757 RELNSTERMAKLDSMTLMGSCLADDKLLLVQSVKEKGHVVAFFGGSSTRDTPALKEADVG 816
R + R LD ++ L K V+ ++ K VVAF G D PAL +AD+G
Sbjct: 563 RSAEAISRELNLD--LVIAEVLPHQKSEEVKKLQAK-EVVAFVG-DGINDAPALAQADLG 618
Query: 817 ITEENKCTEMARECSDIVI 835
I +++A E DIV+
Sbjct: 619 IA-VGSGSDVAVESGDIVL 636
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 316 VVRSGREQLIAVSNLLKGDVVRLAKGDRVPGDGLVVNSDGLMLDDVLNSEIDP 368
V+R G+E + V + GD+V + G+++P DG+VV + + + +++ E P
Sbjct: 215 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVP 267
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 773 LMGSCLADDKLLLVQSVKEKGHVVAFFGGSSTRDTPALKEADVGITEENKCTEMARECSD 832
++ + +DK +V +K+KG +VA G D PAL +AD+GI T++A E +
Sbjct: 596 VVAEIMPEDKSRIVSELKDKGLIVAM-AGDGVNDAPALAKADIGIA-MGTGTDVAIESAG 653
Query: 833 IVI 835
+ +
Sbjct: 654 VTL 656
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 30/54 (55%)
Query: 315 KVVRSGREQLIAVSNLLKGDVVRLAKGDRVPGDGLVVNSDGLMLDDVLNSEIDP 368
++ G E+ +++ N+ GD++R+ G+++P DG V + + ++ E P
Sbjct: 229 RIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSFVDESMVTGEPIP 282
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 35/163 (21%)
Query: 697 LLALAG-LREEIKSTVEALRNAGVRIILVSEDELLAVTEVACELGNFRPESNDIALEGEQ 755
++ALA +R E + + L+ G++ ++++ D VA ELG +
Sbjct: 138 VIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELG-----------LDDY 186
Query: 756 FRELNSTERMAKLDSMTLMGSCLADDKLLLVQSVKEKGHVVAFFGGSSTRDTPALKEADV 815
F E+ E+ K V+ V++K +V A G D PAL +ADV
Sbjct: 187 FAEVLPHEKAEK------------------VKEVQQK-YVTAMVG-DGVNDAPALAQADV 226
Query: 816 GITEENKCTEMARECSDIVI--SAVGSLLPILKLGRCAYCNIQ 856
GI T++A E +DIV+ + + I++L R Y ++
Sbjct: 227 GIA-IGAGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKLE 268
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 35/166 (21%)
Query: 697 LLALAG-LREEIKSTVEALRNAGVRIILVSEDELLAVTEVACELGNFRPESNDIALEGEQ 755
++ALA +R E + + L+ G++ ++++ D VA ELG
Sbjct: 138 VIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELG--------------- 182
Query: 756 FRELNSTERMAKLDSMTLMGSCLADDKLLLVQSVKEKGHVVAFFGGSSTRDTPALKEADV 815
LD L +K V+ V++K +V A G D PAL +ADV
Sbjct: 183 ------------LDD--YFAEVLPHEKAEKVKEVQQK-YVTAMVG-DGVNDAPALAQADV 226
Query: 816 GITEENKCTEMARECSDIVI--SAVGSLLPILKLGRCAYCNIQKFT 859
GI T++A E +DIV+ + + I++L R Y +
Sbjct: 227 GIA-IGAGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKFHGLS 271
>pdb|1NI9|A Chain A, 2.0 A Structure Of Glycerol Metabolism Protein From E.
Coli
Length = 338
Score = 33.1 bits (74), Expect = 0.79, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 338 LAKGDRVPGDGLVVNSDGLMLDDV------LNSEIDPDRNPFLFSGSKVMEGHGTMLLIS 391
L +GD+ DG VN+ +ML+ V + E + D P L+ G KV G G + I+
Sbjct: 26 LGRGDKNTADGAAVNAMRIMLNQVNIDGTIVIGEGEIDEAPMLYIGEKVGTGRGDAVDIA 85
Query: 392 V 392
V
Sbjct: 86 V 86
>pdb|3D1R|A Chain A, Structure Of E. Coli Glpx With Its Substrate Fructose
1,6-Bisphosphate
Length = 337
Score = 30.0 bits (66), Expect = 6.9, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 338 LAKGDRVPGDGLVVNSDGLMLDDV------LNSEIDPDRNPFLFSGSKVMEGHGTMLLIS 391
L +GD+ DG VN+ +ML+ V + E + P L+ G KV G G + I+
Sbjct: 25 LGRGDKNTADGAAVNAMRIMLNQVNIDGTIVIGEGEIAEAPMLYIGEKVGTGRGDAVDIA 84
Query: 392 V 392
V
Sbjct: 85 V 85
>pdb|2R8T|A Chain A, Crystal Structure Of The Fructose 1,6-Bisphosphatase Glpx
From E.Coli In The Complex With Fructose
1,6-Bisphosphate
pdb|3BIG|A Chain A, Crystal Structure Of The Fructose-1,6-Bisphosphatase Glpx
From E.Coli In Complex With Inorganic Phosphate
pdb|3BIH|A Chain A, Crystal Structure Of Fructose-1,6-Bisphosphatase From
E.Coli Glpx
Length = 338
Score = 30.0 bits (66), Expect = 6.9, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 338 LAKGDRVPGDGLVVNSDGLMLDDV------LNSEIDPDRNPFLFSGSKVMEGHGTMLLIS 391
L +GD+ DG VN+ +ML+ V + E + P L+ G KV G G + I+
Sbjct: 26 LGRGDKNTADGAAVNAMRIMLNQVNIDGTIVIGEGEIAEAPMLYIGEKVGTGRGDAVDIA 85
Query: 392 V 392
V
Sbjct: 86 V 86
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 29.6 bits (65), Expect = 8.8, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 31/118 (26%)
Query: 700 LAGLREEIKSTVEALRNAGVRIILVSEDELLAVTEVACELGNFRPESNDIALEGEQFREL 759
L L+E K V+ L+ G+++ ++ G+ +R
Sbjct: 20 LTKLKESAKPAVQELKRXGIKVGXIT---------------------------GDNWRSA 52
Query: 760 NSTERMAKLDSMTLMGSCLADDKLLLVQSVKEKGHVVAFFGGSSTRDTPALKEADVGI 817
+ R LD ++ L K V+ ++ K VVAF G D PAL +AD+GI
Sbjct: 53 EAISRELNLD--LVIAEVLPHQKSEEVKKLQAK-EVVAFVG-DGINDAPALAQADLGI 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,014,626
Number of Sequences: 62578
Number of extensions: 1090322
Number of successful extensions: 2561
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2499
Number of HSP's gapped (non-prelim): 48
length of query: 1108
length of database: 14,973,337
effective HSP length: 109
effective length of query: 999
effective length of database: 8,152,335
effective search space: 8144182665
effective search space used: 8144182665
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)