BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043362
         (516 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  799 bits (2063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/516 (74%), Positives = 445/516 (86%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE+ +S  LTVCYN+L+SGY LNS V + V LF +MRE GVEIN VTML L+  C  P
Sbjct: 67  LFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIP 126

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L LGMC H  CVKFGLD+D SVGNCL+TMYVK G +D GRKLFD++P KGLITWNAMI
Sbjct: 127 GNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMI 186

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GYAQNGLA +VLELY+EM+S G CPD +T VGVLSSCAHLGA SVG EVE++++  GF 
Sbjct: 187 NGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFS 246

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           SNPFLNNAL+NMYARCGNLKKAR IFDGMP K+VVSWTAIIGGYG+HG GEVAV LFDEM
Sbjct: 247 SNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEM 306

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           ++ GI+PDGTAFVSVLSACSHAGLT+KGL+YF  M+ KYGL+PG EHY+CMVDLLGRAG+
Sbjct: 307 IRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGR 366

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           LNEA ELIESM V  DGA+WGALLGACKIH+NVELAELAF +VI+LEP NTGYYVLLSN+
Sbjct: 367 LNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIELEPTNTGYYVLLSNV 426

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+EA NL+GI+RVRM+MR+R+LKKDPG SYVE KGRVHLF  GDRNH QT EIY+ L++L
Sbjct: 427 YTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGRVHLFFAGDRNHPQTNEIYKKLNEL 486

Query: 421 ENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCH 480
           ENLV++ DG K++D +  EE+LN   VHSEKLA+AF ++NT   TEI+++KNLRICGDCH
Sbjct: 487 ENLVKDLDGCKKNDHERREEYLNSMGVHSEKLAVAFALLNTRKETEIIIIKNLRICGDCH 546

Query: 481 LFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           LFIKLVSKIVDRQF+VRDATRFHHFK+GFCSCK+YW
Sbjct: 547 LFIKLVSKIVDRQFVVRDATRFHHFKNGFCSCKEYW 582



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 176/368 (47%), Gaps = 12/368 (3%)

Query: 38  MREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS 97
           M   G   N+ T    +  C        G   HC   K G  L+  V   L++MY KC  
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 98  VDYGRKLFDQVPEKGLIT--WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
           +D  RKLFD+ P+   +T  +N+++SGYA N     V+ L+ EM+ LGV  + VT +G++
Sbjct: 61  IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLV 120

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
             C   G   +G+ V       G   +  + N L+ MY + G +   R +FD MPRK ++
Sbjct: 121 QPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLI 180

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           +W A+I GY  +G     ++L+ EM   G  PD    V VLS+C+H G    G E    M
Sbjct: 181 TWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKM 240

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVEL 335
           +  +G    P     +V++  R G L +A ++ + M V+     W A++G   +H   E+
Sbjct: 241 EG-FGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVK-SVVSWTAIIGGYGMHGQGEV 298

Query: 336 AELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSY--- 390
           A   F ++I+  ++P  T +  +LS          G+    +M R+  L+  PG  +   
Sbjct: 299 AVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLR--PGAEHYSC 356

Query: 391 -VELKGRV 397
            V+L GR 
Sbjct: 357 MVDLLGRA 364


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/517 (70%), Positives = 431/517 (83%), Gaps = 1/517 (0%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE+  S +L VCYNALI+GY LNS  S+AV LF +MR++GV +N+VTML L+P+C  P
Sbjct: 113 VFDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGP 172

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
            +L  G   H   V+FGLD D SVGNCL+TMYV+CGSVD+ RKLFD +PEKGLITWNAMI
Sbjct: 173 IHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMI 232

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGYAQNGLA HVL+LYR+M+  G+ PD VT VGVLSSCAHLGAH+ G EVEQ+I+ +GFG
Sbjct: 233 SGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFG 292

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            NPFL NALINMYARCGNL KARAIFDGM  K V+SWTAII GYG+HG GE+AVQLFDEM
Sbjct: 293 FNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEM 352

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           + S   PDG AFVSVLSACSHAGLT+KGL YF  M+  YGLQPGPEHY+C+VDLLGRAG+
Sbjct: 353 ISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGR 412

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L EA +LI SM VEPDGAVWGALLGACKIH+NVELAELAF KVI+ EP N GYYVLLSNI
Sbjct: 413 LEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIEFEPTNIGYYVLLSNI 472

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           +SEA N++GI+RVR+MMRER+LKK+PG SYVE +GR+HLF+ GDR H Q  EIY MLD L
Sbjct: 473 FSEAGNMEGILRVRVMMRERKLKKEPGCSYVEYQGRIHLFLAGDRTHPQAQEIYHMLDGL 532

Query: 421 ENLVQEHDGTKRSDQKN-SEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDC 479
           E++++   G+  +DQ++ +EE +    VHSEKLAIAFG+INT PGTEI V+KNLR+CGDC
Sbjct: 533 EDIIKRRGGSNDNDQESRNEELITGMGVHSEKLAIAFGLINTEPGTEITVIKNLRVCGDC 592

Query: 480 HLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           HLF+KLVS+IVDRQ +VRDATRFHHFK+G CSCKDYW
Sbjct: 593 HLFLKLVSEIVDRQLVVRDATRFHHFKNGVCSCKDYW 629



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 186/396 (46%), Gaps = 16/396 (4%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T  +NA +          EA++L+ +M   G   N+ T       C        G   H 
Sbjct: 21  TASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHG 80

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV--PEKGLITWNAMISGYAQNGLA 129
             +K G + +  V   L++MY KC ++   RK+FD+        + +NA+I+GY+ N   
Sbjct: 81  HVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRF 140

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCA---HLGAHSVGLEVEQQIQANGFGSNPFLN 186
           +  + L+R+M+  GV  +AVT +G++  CA   HLG    G  +       G   +  + 
Sbjct: 141 SDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLG---FGTSLHACSVRFGLDGDLSVG 197

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           N L+ MY RCG++  AR +FDGMP K +++W A+I GY  +G     + L+ +M  +GI 
Sbjct: 198 NCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIV 257

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMK-NKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
           PD    V VLS+C+H G    G E    ++ + +G  P  ++   ++++  R G L +A 
Sbjct: 258 PDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKN--ALINMYARCGNLVKAR 315

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE--PMNTGYYVLLSNIYSE 363
            + + M  E +   W A++    +H   ELA   F ++I  +  P    +  +LS     
Sbjct: 316 AIFDGM-TEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHA 374

Query: 364 ARNLDGIMRVRMMMRERRLKKDPGY--SYVELKGRV 397
                G+     M R+  L+  P +    V+L GR 
Sbjct: 375 GLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRA 410


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/518 (69%), Positives = 429/518 (82%), Gaps = 2/518 (0%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF+E+  S  LTVCYNAL+SGYV NS  SEAV LF +M E+GV +NSVT+L L+P CV P
Sbjct: 106 VFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSP 165

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L LG   HC  +K+G D D SV NC +TMY+KCGSV+Y +KLFD++P KGLI+WNAM+
Sbjct: 166 INLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMV 225

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGYAQNGLAT+VLELYR M   GV PD VT VGVLSSCA+LGA SVG EVE +IQA+GF 
Sbjct: 226 SGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFT 285

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           SNPFLNNALINMYARCGNL KA+A+FDGMP +T+VSWTAIIGGYG+HGHGE+AVQLF EM
Sbjct: 286 SNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEM 345

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           ++SGI PDGTAFV VLSACSHAGLTD+GLEYF  MK  Y L+PGPEHY+CMVDLLGRAG+
Sbjct: 346 IRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGR 405

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L EA  LIESM ++PDGAVWGALLGACKIHKNVELAELAF +VI+LEP N GYYVLLSNI
Sbjct: 406 LKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNI 465

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           YS A N  G++R+R+MM+E++LKKDPG SYVELKGRVH F+VGDRNH Q+ EIYR+L++L
Sbjct: 466 YSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEEL 525

Query: 421 ENLVQEHDGTKRSD--QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGD 478
           E ++ +  G    D  ++++++      VHSEKLA+AFG++NT+ G E+V++KNLRIC D
Sbjct: 526 EAIIMQEFGKPEKDNREESNKDGFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICED 585

Query: 479 CHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           CHLF K+VSKIV RQ  VRDATRFHHF++G CSCKDYW
Sbjct: 586 CHLFFKMVSKIVHRQLTVRDATRFHHFRNGSCSCKDYW 623



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 106/374 (28%), Positives = 180/374 (48%), Gaps = 8/374 (2%)

Query: 30  EAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLM 89
           +A+SL+ +M   G   N+ T    L  C       LG   H    K G   +  V   L+
Sbjct: 32  QALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLI 91

Query: 90  TMYVKCGSVDYGRKLFDQV--PEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           +MY K   VD  RK+F++     K  + +NA++SGY  N   +  + L+R+M   GV  +
Sbjct: 92  SMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVN 151

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
           +VT +G++ +C       +G  +       GF S+  + N  I MY +CG++  A+ +FD
Sbjct: 152 SVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFD 211

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            MP K ++SW A++ GY  +G     ++L+  M  +G+ PD    V VLS+C++ G    
Sbjct: 212 EMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSV 271

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           G E  + ++   G    P     ++++  R G L +A  + + M  E     W A++G  
Sbjct: 272 GHEVEFKIQAS-GFTSNPFLNNALINMYARCGNLTKAQAVFDGM-PERTLVSWTAIIGGY 329

Query: 328 KIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKD 385
            +H + E+A   F ++I+  +EP  T +  +LS          G+   +MM R  +L+  
Sbjct: 330 GMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPG 389

Query: 386 PGY--SYVELKGRV 397
           P +    V+L GR 
Sbjct: 390 PEHYSCMVDLLGRA 403



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 93/212 (43%), Gaps = 6/212 (2%)

Query: 116 WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175
           WN  +   A+       L LY +M   G  P+A TF   L SCA L    +G +   QI 
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76

Query: 176 ANGFGSNPFLNNALINMYARCGNLKKARAIFDG--MPRKTVVSWTAIIGGYGIHGHGEVA 233
             G    PF+   LI+MY +   +  AR +F+     RK  V + A++ GY  +     A
Sbjct: 77  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEA 136

Query: 234 VQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293
           V LF +M + G+  +    + ++ AC      + G    +    KYG         C + 
Sbjct: 137 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELG-SSLHCSTLKYGFDSDVSVVNCFIT 195

Query: 294 LLGRAGQLNEALELIESMLVEPDGAV-WGALL 324
           +  + G +N A +L + M V+  G + W A++
Sbjct: 196 MYMKCGSVNYAQKLFDEMPVK--GLISWNAMV 225


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/518 (69%), Positives = 429/518 (82%), Gaps = 2/518 (0%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF+E+  S  LTVCYNAL+SGYV NS  S+AV LF +M E+GV +NSVT+L L+P CV P
Sbjct: 97  VFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSP 156

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L LG   HC  +K+G D D SV NC +TMY+KCGSV+Y +KLFD++P KGLI+WNAM+
Sbjct: 157 INLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMV 216

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGYAQNGLAT+VLELYR M   GV PD VT VGVLSSCA+LGA SVG EVE ++QA+GF 
Sbjct: 217 SGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFT 276

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           SNPFLNNALINMYARCGNL KA+A+FDGMP +T+VSWTAIIGGYG+HGHGE+AVQLF EM
Sbjct: 277 SNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEM 336

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           ++SGI PDGTAFV VLSACSHAGLTD+GLEYF  MK  Y L+PGPEHY+CMVDLLGRAG+
Sbjct: 337 IRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGR 396

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L EA  LIESM ++PDGAVWGALLGACKIHKNVELAELAF +VI+LEP N GYYVLLSNI
Sbjct: 397 LKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNI 456

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           YS A N  G++R+R+MM+E++LKKDPG SYVELKGRVH F+VGDRNH Q+ EIYR+L++L
Sbjct: 457 YSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEEL 516

Query: 421 ENLVQEHDGTKRSD--QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGD 478
           E ++ +  G    D  ++++++      VHSEKLA+AFG++NT+ G E+V++KNLRIC D
Sbjct: 517 EAIIMQEFGKPEKDNREESNKDGFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICED 576

Query: 479 CHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           CHLF K+VSKIV RQ  VRDATRFHHF++G CSCKDYW
Sbjct: 577 CHLFFKMVSKIVHRQLTVRDATRFHHFRNGSCSCKDYW 614



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/374 (28%), Positives = 180/374 (48%), Gaps = 8/374 (2%)

Query: 30  EAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLM 89
           +A+SL+ +M   G   N+ T    L  C       LG   H    K G   +  V   L+
Sbjct: 23  QALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLI 82

Query: 90  TMYVKCGSVDYGRKLFDQV--PEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           +MY K   VD  RK+F++     K  + +NA++SGY  N   +  + L+R+M   GV  +
Sbjct: 83  SMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEGVPVN 142

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
           +VT +G++ +C       +G  +       GF S+  + N  I MY +CG++  A+ +FD
Sbjct: 143 SVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFD 202

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            MP K ++SW A++ GY  +G     ++L+  M  +G+ PD    V VLS+C++ G    
Sbjct: 203 EMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSV 262

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           G E  + M+   G    P     ++++  R G L +A  + + M  E     W A++G  
Sbjct: 263 GHEVEFKMQAS-GFTSNPFLNNALINMYARCGNLTKAQAVFDGM-PERTLVSWTAIIGGY 320

Query: 328 KIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKD 385
            +H + E+A   F ++I+  +EP  T +  +LS          G+   +MM R  +L+  
Sbjct: 321 GMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPG 380

Query: 386 PGY--SYVELKGRV 397
           P +    V+L GR 
Sbjct: 381 PEHYSCMVDLLGRA 394



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 93/212 (43%), Gaps = 6/212 (2%)

Query: 116 WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175
           WN  +   A+       L LY +M   G  P+A TF   L SCA L    +G +   QI 
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67

Query: 176 ANGFGSNPFLNNALINMYARCGNLKKARAIFDG--MPRKTVVSWTAIIGGYGIHGHGEVA 233
             G    PF+   LI+MY +   +  AR +F+     RK  V + A++ GY  +     A
Sbjct: 68  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDA 127

Query: 234 VQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293
           V LF +M + G+  +    + ++ AC      + G    +    KYG         C + 
Sbjct: 128 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELG-SSLHCSTLKYGFDSDVSVVNCFIT 186

Query: 294 LLGRAGQLNEALELIESMLVEPDGAV-WGALL 324
           +  + G +N A +L + M V+  G + W A++
Sbjct: 187 MYMKCGSVNYAQKLFDEMPVK--GLISWNAMV 216


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/516 (65%), Positives = 419/516 (81%), Gaps = 2/516 (0%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF+E+ +S+ L+VCYNALISGY  NS V++A  +F +M+E GV ++SVTML L+P+C  P
Sbjct: 110 VFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVP 169

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
            YLWLG   H  CVK GLD + +V N  +TMY+KCGSV+ GR+LFD++P KGLITWNA+I
Sbjct: 170 EYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVI 229

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGY+QNGLA  VLELY +MKS GVCPD  T V VLSSCAHLGA  +G EV + +++NGF 
Sbjct: 230 SGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFV 289

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            N F++NA I+MYARCGNL KARA+FD MP K++VSWTA+IG YG+HG GE+ + LFD+M
Sbjct: 290 PNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDM 349

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           +K GIRPDG  FV VLSACSH+GLTDKGLE F  MK +Y L+PGPEHY+C+VDLLGRAG+
Sbjct: 350 IKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGR 409

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L+EA+E IESM VEPDGAVWGALLGACKIHKNV++AELAF KVI+ EP N GYYVL+SNI
Sbjct: 410 LDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNI 469

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           YS+++N +GI R+R+MMRER  +K PGYSYVE KGRVHLF+ GDR+H QT E++RMLD+L
Sbjct: 470 YSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDEL 529

Query: 421 ENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCH 480
           E  V E  G    D+   EE  + T  HSE+LAIAFGI+N+ PGTEI+V+KNLR+C DCH
Sbjct: 530 ETSVMELAGNMDCDR--GEEVSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCH 587

Query: 481 LFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +F+K VSKIVDRQF+VRDA+RFH+FK G CSCKDYW
Sbjct: 588 VFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 114/388 (29%), Positives = 187/388 (48%), Gaps = 8/388 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N  +      SL SE++SL+  M   G   ++ +   +L  C        G   HC   
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT--WNAMISGYAQNGLATHV 132
           K G + +  V   L++MY KCG V   RK+F++ P+   ++  +NA+ISGY  N   T  
Sbjct: 81  KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
             ++R MK  GV  D+VT +G++  C       +G  +  Q    G  S   + N+ I M
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITM 200

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CG+++  R +FD MP K +++W A+I GY  +G     ++L+++M  SG+ PD    
Sbjct: 201 YMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTL 260

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           VSVLS+C+H G    G E    +++  G  P        + +  R G L +A  + + M 
Sbjct: 261 VSVLSSCAHLGAKKIGHEVGKLVESN-GFVPNVFVSNASISMYARCGNLAKARAVFDIMP 319

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDGI 370
           V+     W A++G   +H   E+  + F  +IK  + P    + ++LS          G+
Sbjct: 320 VK-SLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGL 378

Query: 371 MRVRMMMRERRLKKDPGY--SYVELKGR 396
              R M RE +L+  P +    V+L GR
Sbjct: 379 ELFRAMKREYKLEPGPEHYSCLVDLLGR 406


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/516 (65%), Positives = 417/516 (80%), Gaps = 2/516 (0%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF+E+  S+ L VCYNALISGY  NS VS+A  +F +M+E GV ++SVT+L L+P+C  P
Sbjct: 107 VFEENPHSSQLGVCYNALISGYTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVP 166

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
            YLWLG   H  CVK G   + +V N  +TMY+KCGSV+ GR+LFD++P KGLITWNA+I
Sbjct: 167 EYLWLGRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVI 226

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGY+QNGLA  VLEL+ +MKS GVCPD  T V VLSSCAHLGA  +G EV + ++ANGF 
Sbjct: 227 SGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFA 286

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            N FL+NALI+MYARCGNL KARA+FD MP K++VSWTA+IG YG+HG GE  + LFD+M
Sbjct: 287 PNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDM 346

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           +K GIRPDG  FV VLSACSH+GLTDKGLE F  MK +Y L+PGPEHY+C+VDLLGRAG+
Sbjct: 347 IKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGR 406

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L+EA+E I+SM VEPDGAVWGALLGACKIHKNV++AELAF KVI+ EPMN GYYVL+SNI
Sbjct: 407 LDEAMEFIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPMNIGYYVLMSNI 466

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           YS+++N +GI R+R+MMRER  +K PGYSYVE KG+VHLF+ GDR+H QT E++RMLD+L
Sbjct: 467 YSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGKVHLFLAGDRSHEQTEEVHRMLDEL 526

Query: 421 ENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCH 480
           E  V E  G    D+   EE  + T  HSE+LAIAFGI+N+ PGTEI+V+KNLR+C DCH
Sbjct: 527 ETSVMELAGNMDCDR--GEEVSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCH 584

Query: 481 LFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +FIKLVSKIVDR+F+VRDA+RFH+FK G CSCKDYW
Sbjct: 585 VFIKLVSKIVDRRFVVRDASRFHYFKDGVCSCKDYW 620



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 185/391 (47%), Gaps = 8/391 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +  +N  +      SL +E++SL+  M   G   ++ +   +L  C        G   HC
Sbjct: 15  STSWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHC 74

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL--ITWNAMISGYAQNGLA 129
             ++ G + +  V   L++MY KCG V+  RK+F++ P      + +NA+ISGY  N   
Sbjct: 75  HVIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKV 134

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
           +    ++R MK  GV  D+VT +G++  C       +G  +  +    G  S   + N+ 
Sbjct: 135 SDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSF 194

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           I MY +CG+++  R +FD MP K +++W A+I GY  +G     ++LF++M  SG+ PD 
Sbjct: 195 ITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDP 254

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
              VSVLS+C+H G    G E    +    G  P       ++ +  R G L +A  + +
Sbjct: 255 FTLVSVLSSCAHLGAKKIGQE-VGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFD 313

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNL 367
            M V+     W A++G   +H   E     F  +IK  + P    + ++LS         
Sbjct: 314 IMPVK-SLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTD 372

Query: 368 DGIMRVRMMMRERRLKKDPGY--SYVELKGR 396
            G+   R M RE +L+  P +    V+L GR
Sbjct: 373 KGLELFRAMKREYKLEPGPEHYSCLVDLLGR 403


>gi|356537109|ref|XP_003537073.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Glycine max]
          Length = 630

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/523 (65%), Positives = 411/523 (78%), Gaps = 10/523 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQ-------GVEINSVTMLCL 53
           VFDE     + T+CYNA+ISGY  NS    AV LF KMR +        V +N+VT+L L
Sbjct: 111 VFDEM---PNPTICYNAMISGYSFNSKPLHAVCLFRKMRREEEDGLDVDVNVNAVTLLSL 167

Query: 54  LPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL 113
           +  C    +L +G+C H  CV+FG   D +V N L+TMYVKCG V+  RK+FD++  + L
Sbjct: 168 VSGCSVATHLTIGVCLHGCCVRFGFVTDLAVANSLVTMYVKCGEVELARKVFDEMLVRDL 227

Query: 114 ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQ 173
           ITWNAMISGYAQNG A  VLE+Y EMK  GV  DAVT +GV+S+CA+LGA  +G EVE++
Sbjct: 228 ITWNAMISGYAQNGHARCVLEVYSEMKLSGVSADAVTLLGVMSACANLGAQGIGREVERE 287

Query: 174 IQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVA 233
           I+  GFG NPFL NAL+NMYARCGNL +AR +FD    K+VVSWTAIIGGYGIHGHGEVA
Sbjct: 288 IERRGFGCNPFLRNALVNMYARCGNLTRAREVFDRSGEKSVVSWTAIIGGYGIHGHGEVA 347

Query: 234 VQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293
           ++LFDEM++S +RPD T FVSVLSACSHAGLTD+GLEYF  M+ KYGLQPGPEHY+C+VD
Sbjct: 348 LELFDEMVESAVRPDKTVFVSVLSACSHAGLTDRGLEYFKEMERKYGLQPGPEHYSCVVD 407

Query: 294 LLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGY 353
           LLGRAG+L EA+ LI+SM V+PDGAVWGALLGACKIHKN E+AELAF  V++LEP N GY
Sbjct: 408 LLGRAGRLEEAVNLIKSMKVKPDGAVWGALLGACKIHKNAEIAELAFQHVVELEPTNIGY 467

Query: 354 YVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEI 413
           YVLLSNIY++A NL+G+ RVR+MMRER+L+KDPGYSYVE KG+++LF  GD +H QT +I
Sbjct: 468 YVLLSNIYTDANNLEGVSRVRVMMRERKLRKDPGYSYVEYKGKMNLFYSGDLSHPQTKQI 527

Query: 414 YRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
           YRMLD+LE+LV+E        Q  SEE L  T VHSEKLAIAF ++NT  GTEI VMKNL
Sbjct: 528 YRMLDELESLVKEVHPPNEKCQGRSEELLIGTGVHSEKLAIAFALLNTKSGTEITVMKNL 587

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           R+C DCHLFIKLVSKIV+RQFIVRDATRFHHF+ G CSCKDYW
Sbjct: 588 RVCVDCHLFIKLVSKIVNRQFIVRDATRFHHFRDGICSCKDYW 630



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 178/378 (47%), Gaps = 14/378 (3%)

Query: 30  EAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLM 89
           EA++L+  M       N+ T   LL  C            H   ++ G   D    + L+
Sbjct: 37  EALTLYRHMLRSSFFPNTFTFPFLLKSCAFLSLPLAASQLHAHVIRTGSQPDPYTRSSLI 96

Query: 90  TMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK-------SL 142
             Y KC    + RK+FD++P    I +NAMISGY+ N    H + L+R+M+        +
Sbjct: 97  NTYAKCSLHHHARKVFDEMPNP-TICYNAMISGYSFNSKPLHAVCLFRKMRREEEDGLDV 155

Query: 143 GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202
            V  +AVT + ++S C+     ++G+ +       GF ++  + N+L+ MY +CG ++ A
Sbjct: 156 DVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFGFVTDLAVANSLVTMYVKCGEVELA 215

Query: 203 RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262
           R +FD M  + +++W A+I GY  +GH    ++++ EM  SG+  D    + V+SAC++ 
Sbjct: 216 RKVFDEMLVRDLITWNAMISGYAQNGHARCVLEVYSEMKLSGVSADAVTLLGVMSACANL 275

Query: 263 GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGA 322
           G    G E       + G    P     +V++  R G L  A E+ +    E     W A
Sbjct: 276 GAQGIGREVER-EIERRGFGCNPFLRNALVNMYARCGNLTRAREVFDRS-GEKSVVSWTA 333

Query: 323 LLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380
           ++G   IH + E+A   F ++++  + P  T +  +LS          G+   + M R+ 
Sbjct: 334 IIGGYGIHGHGEVALELFDEMVESAVRPDKTVFVSVLSACSHAGLTDRGLEYFKEMERKY 393

Query: 381 RLKKDPGY--SYVELKGR 396
            L+  P +    V+L GR
Sbjct: 394 GLQPGPEHYSCVVDLLGR 411



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 10/218 (4%)

Query: 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
            WN  +   ++       L LYR M      P+  TF  +L SCA L       ++   +
Sbjct: 21  AWNNQLRQLSKQRQYREALTLYRHMLRSSFFPNTFTFPFLLKSCAFLSLPLAASQLHAHV 80

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
              G   +P+  ++LIN YA+C     AR +FD MP  T+  + A+I GY  +     AV
Sbjct: 81  IRTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEMPNPTIC-YNAMISGYSFNSKPLHAV 139

Query: 235 QLFDEM-------LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH 287
            LF +M       L   +  +    +S++S CS A     G+   +G   ++G       
Sbjct: 140 CLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGV-CLHGCCVRFGFVTDLAV 198

Query: 288 YTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
              +V +  + G++  A ++ + MLV  D   W A++ 
Sbjct: 199 ANSLVTMYVKCGEVELARKVFDEMLVR-DLITWNAMIS 235


>gi|242054799|ref|XP_002456545.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
 gi|241928520|gb|EES01665.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
          Length = 640

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 280/528 (53%), Positives = 368/528 (69%), Gaps = 19/528 (3%)

Query: 4   ESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL 63
           ES   T L   +N++ISG  L++L   + +LF +MR   V  ++VT+L L+P       L
Sbjct: 117 ESTPHTTLRTAFNSVISGCALHALPVASFALFRRMRAAAVGFDAVTLLALVPATP----L 172

Query: 64  WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS--VDYGRKLFDQVP--EKGLITWNAM 119
            +    H +  + GL  + SV NCLM+ Y + G+      R++FD++P   + L++WNA+
Sbjct: 173 SVVPQVHALAARVGLATETSVANCLMSTYARGGAFGAALARRVFDEMPLASRDLVSWNAV 232

Query: 120 ISGYAQNGLATHVLELYREMKSL---GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
           +S +AQNGLA   LELYR M+S    GV PDAVT VGVLSS AHLGA  VG +VE  ++ 
Sbjct: 233 LSAHAQNGLAVDALELYRRMRSPEGSGVEPDAVTIVGVLSSAAHLGARGVGFDVEHYVRQ 292

Query: 177 N--GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
              GF +N  L NALIN +ARCG+L +A+ +FD MPRK++VSWTA+I G+G+HG+G+VAV
Sbjct: 293 RIPGFHTNVQLCNALINFHARCGSLPRAQQLFDEMPRKSIVSWTALITGHGMHGNGDVAV 352

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
            LF+ M+  GIRPD  A V++ SACSHAGL D+G  YF  M++ Y L+P  EHYTCMVDL
Sbjct: 353 SLFERMVSEGIRPDNVAMVALFSACSHAGLYDEGRRYFSAMESVYKLRPTLEHYTCMVDL 412

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           LGRAG+L EA ELI SM +  DGAVWGALLGACKIHKNV++ E AF +VI+LEP N GYY
Sbjct: 413 LGRAGRLEEARELISSMPMPADGAVWGALLGACKIHKNVDVGEEAFTRVIELEPKNVGYY 472

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
           VL+SNIY++   LD + RVR MMRER LKK+PG SYVE KGRVHLFM  D +H Q   IY
Sbjct: 473 VLMSNIYTDTGQLDCVARVRAMMRERGLKKEPGCSYVEHKGRVHLFMADDHSHPQARRIY 532

Query: 415 RMLDKLENLVQEHDGTKRSDQKNSEEHLNDTE------VHSEKLAIAFGIINTSPGTEIV 468
            ++ +LE +V+E  G + S+   ++  +          +HSEKLA+AFG++NT  G+EIV
Sbjct: 533 ELVIRLELMVKEKSGMRESEVAAAKGRMEKAAAQPLVGIHSEKLAVAFGLLNTEAGSEIV 592

Query: 469 VMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           V+KNLR+CGDCH F+K+VS   +R F+VRDA+RFH F  G CSCKDYW
Sbjct: 593 VIKNLRVCGDCHSFLKVVSATTNRAFLVRDASRFHRFDGGVCSCKDYW 640



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 136/265 (51%), Gaps = 11/265 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMRE---QGVEINSVTMLCLLPIC 57
           VFDE   ++   V +NA++S +  N L  +A+ L+ +MR     GVE ++VT++ +L   
Sbjct: 215 VFDEMPLASRDLVSWNAVLSAHAQNGLAVDALELYRRMRSPEGSGVEPDAVTIVGVLSSA 274

Query: 58  VDPGYLWLGMCC-HCICVKF-GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT 115
              G   +G    H +  +  G   +  + N L+  + +CGS+   ++LFD++P K +++
Sbjct: 275 AHLGARGVGFDVEHYVRQRIPGFHTNVQLCNALINFHARCGSLPRAQQLFDEMPRKSIVS 334

Query: 116 WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175
           W A+I+G+  +G     + L+  M S G+ PD V  V + S+C+H G +  G      ++
Sbjct: 335 WTALITGHGMHGNGDVAVSLFERMVSEGIRPDNVAMVALFSACSHAGLYDEGRRYFSAME 394

Query: 176 ANGFGSNPFLNN--ALINMYARCGNLKKARAIFDGMPRKTV-VSWTAIIGGYGIHGHGEV 232
           +  +   P L +   ++++  R G L++AR +   MP       W A++G   IH + +V
Sbjct: 395 SV-YKLRPTLEHYTCMVDLLGRAGRLEEARELISSMPMPADGAVWGALLGACKIHKNVDV 453

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLS 257
             + F  +++  + P    +  ++S
Sbjct: 454 GEEAFTRVIE--LEPKNVGYYVLMS 476


>gi|414879943|tpg|DAA57074.1| TPA: hypothetical protein ZEAMMB73_804341 [Zea mays]
          Length = 1056

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 277/528 (52%), Positives = 359/528 (67%), Gaps = 19/528 (3%)

Query: 4    ESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL 63
            ES   T L   +N+LISG   +SL     +LF +MR   V  ++VT+L L+P       L
Sbjct: 533  ESTSHTTLRTAFNSLISGCARHSLPVACFALFRRMRAIAVRFDAVTLLALVPA----APL 588

Query: 64   WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS--VDYGRKLFDQVP--EKGLITWNAM 119
             +    H +  + GL  + SV NCLM+ Y + G+      R++FD++P   + L++WNA+
Sbjct: 589  SVVPQVHALAAQVGLATETSVANCLMSTYARGGAFGAALARRVFDEMPLASRDLVSWNAV 648

Query: 120  ISGYAQNGLATHVLELYREMKSL---GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI-- 174
            +S +AQNGLA   L+LYR M+S    GV PDAVT VGVLSS AHLGA  VG + E  +  
Sbjct: 649  LSAHAQNGLAVDALDLYRRMRSPEGSGVEPDAVTIVGVLSSAAHLGARGVGFDAEHYVVQ 708

Query: 175  QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
            +  GF +N  L NALIN +ARCG+L +A+ +FD MP K++VSWTA+I G+G+HG+G VAV
Sbjct: 709  RLPGFRTNVQLCNALINFHARCGSLPRAQQLFDEMPAKSIVSWTALITGHGMHGNGGVAV 768

Query: 235  QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
             LF+ M+  GI PD  A V VLSACSHAGL D+G  YF  M++ Y L+P  EHYTC+VDL
Sbjct: 769  SLFERMVSEGIHPDNVAMVGVLSACSHAGLYDEGRMYFSTMESVYKLRPTLEHYTCIVDL 828

Query: 295  LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
            LGRAG+L EA ELI SM +  DGAVWGALLGACKIHKNVE+ E AF +V++LEP N GYY
Sbjct: 829  LGRAGRLEEARELISSMPMPADGAVWGALLGACKIHKNVEIGEEAFARVVELEPRNVGYY 888

Query: 355  VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
            VL+SNIY++   LD + RVR +MR+R LKK+PG SYVE  GRVHLFM  D +H Q   IY
Sbjct: 889  VLMSNIYTDTGQLDCVARVRAVMRKRGLKKEPGCSYVEHNGRVHLFMADDHSHPQARRIY 948

Query: 415  RMLDKLENLVQEHDGTKRS----DQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIV 468
             ++ +LE +V+E  G + S     +   E+      V  HSEKLA+AFG++NT  G+EIV
Sbjct: 949  ELVTRLELMVKEKSGVRESVVAVPKGRMEKEAAQPLVGFHSEKLAVAFGLLNTEAGSEIV 1008

Query: 469  VMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            V+KNLR+CGDCH F+K VS   +R F+VRDA+RFH F  G CSCKDYW
Sbjct: 1009 VIKNLRVCGDCHSFLKAVSATTNRSFLVRDASRFHRFDGGVCSCKDYW 1056



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 131/250 (52%), Gaps = 9/250 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMRE---QGVEINSVTMLCLLPIC 57
           VFDE   ++   V +NA++S +  N L  +A+ L+ +MR     GVE ++VT++ +L   
Sbjct: 631 VFDEMPLASRDLVSWNAVLSAHAQNGLAVDALDLYRRMRSPEGSGVEPDAVTIVGVLSSA 690

Query: 58  VDPGYLWLGMCCHCICVKF--GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT 115
              G   +G       V+   G   +  + N L+  + +CGS+   ++LFD++P K +++
Sbjct: 691 AHLGARGVGFDAEHYVVQRLPGFRTNVQLCNALINFHARCGSLPRAQQLFDEMPAKSIVS 750

Query: 116 WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175
           W A+I+G+  +G     + L+  M S G+ PD V  VGVLS+C+H G +  G      ++
Sbjct: 751 WTALITGHGMHGNGGVAVSLFERMVSEGIHPDNVAMVGVLSACSHAGLYDEGRMYFSTME 810

Query: 176 ANGFGSNPFLNN--ALINMYARCGNLKKARAIFDGMPRKTV-VSWTAIIGGYGIHGHGEV 232
           +  +   P L +   ++++  R G L++AR +   MP       W A++G   IH + E+
Sbjct: 811 SV-YKLRPTLEHYTCIVDLLGRAGRLEEARELISSMPMPADGAVWGALLGACKIHKNVEI 869

Query: 233 AVQLFDEMLK 242
             + F  +++
Sbjct: 870 GEEAFARVVE 879


>gi|357131197|ref|XP_003567226.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Brachypodium distachyon]
          Length = 648

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 282/526 (53%), Positives = 366/526 (69%), Gaps = 20/526 (3%)

Query: 5   SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLW 64
           S     L   +N+LISG  L++L +   +LF +MR  GV  ++VT+L L+P    P  + 
Sbjct: 129 STPPATLCTAFNSLISGCALHALPAACFALFRRMRVAGVRFDAVTLLTLVP-AAPPSVVP 187

Query: 65  LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP--EKGLITWNAMISG 122
                  +  + GL  + SV NCL+++Y + G+    R++FD++P   + L++WNA++S 
Sbjct: 188 QLHA---LAARAGLAAETSVANCLISVYARRGAA-LARQVFDEMPAASRDLVSWNAVLSA 243

Query: 123 YAQNGLATHVLELYREMKSL---GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN-- 177
           ++QNGLA   L+LY  M+     GV PDAVT V VLSSCAHLGA SVGL VE+ ++    
Sbjct: 244 HSQNGLAVDALDLYSRMRGCDGHGVEPDAVTLVSVLSSCAHLGARSVGLGVERYMRGKLP 303

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
           GF +N  L NALIN YARCG L +A+ +F+ MPRK++VSWTA+I GYG+HGHGEVA+ LF
Sbjct: 304 GFRTNVQLCNALINFYARCGCLPQAQQLFNEMPRKSIVSWTALITGYGMHGHGEVAINLF 363

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
             M+  GIRPD  A V +LSACSHAG+ D+G +YF  M++ Y L+P  EHYTCMVDLLGR
Sbjct: 364 QTMVSEGIRPDNVAMVGLLSACSHAGMYDEGRKYFSAMESAYQLRPTLEHYTCMVDLLGR 423

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
           AG+L EA ELI SM +  DGAVWGALLGACKIHKNVE+ E AF  VI++EP N GYYVL+
Sbjct: 424 AGRLKEARELISSMPMPADGAVWGALLGACKIHKNVEIGEEAFEHVIEVEPTNVGYYVLM 483

Query: 358 SNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML 417
           +NIY++   LD ++RVR MMRER LKK+PG SYVE KGRVHLFM  D +H Q   IY ++
Sbjct: 484 ANIYTDTGQLDCVVRVRAMMRERGLKKEPGCSYVEHKGRVHLFMADDHSHPQAKRIYELV 543

Query: 418 DKLENLVQEH-DGT-KRSDQKNSEEHLNDTEV-----HSEKLAIAFGIINTSPGTEIVVM 470
            KLE +V+E  DGT      +  E H   T V     HSEKLA+AFG++NT  G+EI V+
Sbjct: 544 LKLEQMVKEKTDGTVGIQGGRMIEGHSEKTAVPLIGFHSEKLAVAFGMLNTV-GSEIAVI 602

Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KNLR+CG+CH F+K VS I +R F+VRDA+RFH F+ G CSCKDYW
Sbjct: 603 KNLRVCGNCHSFLKTVSAIANRVFLVRDASRFHRFEDGACSCKDYW 648



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 135/250 (54%), Gaps = 9/250 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMR---EQGVEINSVTMLCLLPIC 57
           VFDE   ++   V +NA++S +  N L  +A+ L+ +MR     GVE ++VT++ +L  C
Sbjct: 223 VFDEMPAASRDLVSWNAVLSAHSQNGLAVDALDLYSRMRGCDGHGVEPDAVTLVSVLSSC 282

Query: 58  VDPGY--LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT 115
              G   + LG+  +      G   +  + N L+  Y +CG +   ++LF+++P K +++
Sbjct: 283 AHLGARSVGLGVERYMRGKLPGFRTNVQLCNALINFYARCGCLPQAQQLFNEMPRKSIVS 342

Query: 116 WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175
           W A+I+GY  +G     + L++ M S G+ PD V  VG+LS+C+H G +  G +    ++
Sbjct: 343 WTALITGYGMHGHGEVAINLFQTMVSEGIRPDNVAMVGLLSACSHAGMYDEGRKYFSAME 402

Query: 176 ANGFGSNPFLNN--ALINMYARCGNLKKARAIFDGMPRKTV-VSWTAIIGGYGIHGHGEV 232
            + +   P L +   ++++  R G LK+AR +   MP       W A++G   IH + E+
Sbjct: 403 -SAYQLRPTLEHYTCMVDLLGRAGRLKEARELISSMPMPADGAVWGALLGACKIHKNVEI 461

Query: 233 AVQLFDEMLK 242
             + F+ +++
Sbjct: 462 GEEAFEHVIE 471


>gi|125528180|gb|EAY76294.1| hypothetical protein OsI_04228 [Oryza sativa Indica Group]
          Length = 646

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 268/527 (50%), Positives = 362/527 (68%), Gaps = 19/527 (3%)

Query: 5   SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVDPGYL 63
           S         +N+LISG  L+ + +   SLF +MR   GV  ++VT+L L+P+      L
Sbjct: 124 STPPATARTAFNSLISGCALHGVPAGCFSLFRRMRVAAGVRFDAVTLLALVPV----APL 179

Query: 64  WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS--VDYGRKLFDQVPE--KGLITWNAM 119
            +    H +  + GL  + SV NCL+++Y + G       R++F+++P   + L++WNA+
Sbjct: 180 GIVPQLHALAARSGLAANTSVANCLVSVYARGGGGGASLARQVFEEMPRASRDLVSWNAV 239

Query: 120 ISGYAQNGLATHVLELYREMKSL---GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
           IS +AQNGLA   +ELYR M+     GV PDAVT VGVLSSCAH GA  VGL+VEQ ++ 
Sbjct: 240 ISAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSCAHTGARRVGLDVEQYVRD 299

Query: 177 N--GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
              GF  N  L NALIN +ARCG+L +A+ +FD MP ++VVSWTA+I GYG+HG G++AV
Sbjct: 300 TIPGFRDNLPLCNALINFHARCGSLAQAQELFDEMPERSVVSWTALIIGYGMHGQGDIAV 359

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
            LF+ M+     PD  A V +LSACSHAG+ D+G +YF  M+  Y L+P  EHYTCMVDL
Sbjct: 360 DLFETMVSEATAPDSVAMVGLLSACSHAGMYDEGRKYFSTMERDYCLRPKLEHYTCMVDL 419

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           LGRAG+L+EA ELI SM +  DGAVWGALLGACKIHKNVE+ E AF +V+ LEP N GYY
Sbjct: 420 LGRAGRLDEARELIASMPMAADGAVWGALLGACKIHKNVEMGEEAFERVVSLEPANVGYY 479

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
           VL++NIY++A  LDG+ +VR  MR R L+K+PG SYVE KG+VHLFM  D +H Q   IY
Sbjct: 480 VLMANIYADAGQLDGVAKVRAAMRRRGLRKEPGCSYVEHKGKVHLFMADDHSHPQARRIY 539

Query: 415 RMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEV-----HSEKLAIAFGIINTSPGTEIVV 469
            ++ +LE +V+E  G    +++  +       V     HSEKLA+AFG++NT  G+EIVV
Sbjct: 540 ELVVELERMVKEKTGGDVVEERAEKAVAEAAAVPLVGFHSEKLAVAFGLLNTEAGSEIVV 599

Query: 470 MKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +KNLR+CGDCH F+K +S++ +R F+VRDA+RFH F++G CSC+DYW
Sbjct: 600 IKNLRVCGDCHSFLKTISELTNRAFLVRDASRFHRFENGACSCRDYW 646



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 132/250 (52%), Gaps = 9/250 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQ---GVEINSVTMLCLLPIC 57
           VF+E  +++   V +NA+IS +  N L  EAV L+ +MR     GVE ++VT++ +L  C
Sbjct: 222 VFEEMPRASRDLVSWNAVISAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSC 281

Query: 58  VDPGYLWLGMCCHCICVKF--GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT 115
              G   +G+           G   +  + N L+  + +CGS+   ++LFD++PE+ +++
Sbjct: 282 AHTGARRVGLDVEQYVRDTIPGFRDNLPLCNALINFHARCGSLAQAQELFDEMPERSVVS 341

Query: 116 WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175
           W A+I GY  +G     ++L+  M S    PD+V  VG+LS+C+H G +  G +    ++
Sbjct: 342 WTALIIGYGMHGQGDIAVDLFETMVSEATAPDSVAMVGLLSACSHAGMYDEGRKYFSTME 401

Query: 176 ANGFGSNPFLNN--ALINMYARCGNLKKARAIFDGMPRKTV-VSWTAIIGGYGIHGHGEV 232
            + +   P L +   ++++  R G L +AR +   MP       W A++G   IH + E+
Sbjct: 402 RD-YCLRPKLEHYTCMVDLLGRAGRLDEARELIASMPMAADGAVWGALLGACKIHKNVEM 460

Query: 233 AVQLFDEMLK 242
             + F+ ++ 
Sbjct: 461 GEEAFERVVS 470



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 123/253 (48%), Gaps = 24/253 (9%)

Query: 101 GRKLFDQVP------EKGLITWNAMISGYAQNGLATHVLELYREMK-SLGVCPDAVTFVG 153
            R+L D++P            +N++ISG A +G+      L+R M+ + GV  DAVT + 
Sbjct: 113 ARQLLDELPLASTPPATARTAFNSLISGCALHGVPAGCFSLFRRMRVAAGVRFDAVTLLA 172

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR--CGNLKKARAIFDGMPR 211
            L   A LG   +  ++      +G  +N  + N L+++YAR   G    AR +F+ MPR
Sbjct: 173 -LVPVAPLG---IVPQLHALAARSGLAANTSVANCLVSVYARGGGGGASLARQVFEEMPR 228

Query: 212 --KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS---GIRPDGTAFVSVLSACSHAGLTD 266
             + +VSW A+I  +  +G    AV+L+  M      G+ PD    V VLS+C+H G   
Sbjct: 229 ASRDLVSWNAVISAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSCAHTGARR 288

Query: 267 KGLEYFYGMKNKY-GLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAV--WGAL 323
            GL+    +++   G +        +++   R G L +A EL + M   P+ +V  W AL
Sbjct: 289 VGLDVEQYVRDTIPGFRDNLPLCNALINFHARCGSLAQAQELFDEM---PERSVVSWTAL 345

Query: 324 LGACKIHKNVELA 336
           +    +H   ++A
Sbjct: 346 IIGYGMHGQGDIA 358


>gi|115440727|ref|NP_001044643.1| Os01g0819800 [Oryza sativa Japonica Group]
 gi|21104789|dbj|BAB93376.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113534174|dbj|BAF06557.1| Os01g0819800 [Oryza sativa Japonica Group]
          Length = 646

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 266/527 (50%), Positives = 361/527 (68%), Gaps = 19/527 (3%)

Query: 5   SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVDPGYL 63
           S         +N+LISG  L+ + +   SLF +MR   GV  ++VT+L L+P+      L
Sbjct: 124 STPPATARTAFNSLISGCALHGVPAGCFSLFRRMRVAAGVRFDAVTLLALVPV----APL 179

Query: 64  WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS--VDYGRKLFDQVPE--KGLITWNAM 119
            +    H +  + GL  + SV NCL+++Y + G       R++F+++P   + L++WNA+
Sbjct: 180 GIVPQLHALAARSGLAANTSVANCLVSVYARGGGGGASLARQVFEEMPRASRDLVSWNAV 239

Query: 120 ISGYAQNGLATHVLELYREMKSL---GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
           IS +AQNGLA   +ELYR M+     GV PDAVT VGVLSSCAH GA  VGL+VE+ ++ 
Sbjct: 240 ISAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSCAHTGARRVGLDVERYVRD 299

Query: 177 N--GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
              GF  N  L NALIN +ARCG+L +A+ +FD MP ++VVSWT +I GYG+HG G++AV
Sbjct: 300 TIPGFRDNLPLCNALINFHARCGSLAQAQELFDEMPERSVVSWTTLIIGYGMHGQGDIAV 359

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
            LF+ M+     PD  A V +LSACSHAG+ D+G +YF  M+  Y L+P  EHYTCMVDL
Sbjct: 360 DLFETMVSEATAPDSVAMVGLLSACSHAGMYDEGRKYFSTMERDYCLRPKLEHYTCMVDL 419

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           LGRAG+L+EA ELI SM +  DGAVWGALLGACKIHKNVE+ E AF +V+ LEP N GYY
Sbjct: 420 LGRAGRLDEARELIASMPMAADGAVWGALLGACKIHKNVEMGEEAFERVVSLEPANVGYY 479

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
           VL++NIY++A  LDG+ +VR  MR R L+K+PG SYVE KG+VHLFM  D +H Q   IY
Sbjct: 480 VLMANIYADAGQLDGVAKVRAAMRRRGLRKEPGCSYVEHKGKVHLFMADDHSHPQARRIY 539

Query: 415 RMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEV-----HSEKLAIAFGIINTSPGTEIVV 469
            ++ +LE +V+E  G    +++  +       V     HSEKLA+AFG++NT  G+EIVV
Sbjct: 540 ELVVELERMVKEKTGGDVVEERAEKAVAEAAAVPLVGFHSEKLAVAFGLLNTEAGSEIVV 599

Query: 470 MKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +KNLR+CGDCH F+K +S++ +R F+VRDA+RFH F++G CSC+DYW
Sbjct: 600 IKNLRVCGDCHSFLKTISELTNRAFLVRDASRFHRFENGACSCRDYW 646



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 131/250 (52%), Gaps = 9/250 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQ---GVEINSVTMLCLLPIC 57
           VF+E  +++   V +NA+IS +  N L  EAV L+ +MR     GVE ++VT++ +L  C
Sbjct: 222 VFEEMPRASRDLVSWNAVISAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSC 281

Query: 58  VDPGYLWLGMCCHCICVKF--GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT 115
              G   +G+           G   +  + N L+  + +CGS+   ++LFD++PE+ +++
Sbjct: 282 AHTGARRVGLDVERYVRDTIPGFRDNLPLCNALINFHARCGSLAQAQELFDEMPERSVVS 341

Query: 116 WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175
           W  +I GY  +G     ++L+  M S    PD+V  VG+LS+C+H G +  G +    ++
Sbjct: 342 WTTLIIGYGMHGQGDIAVDLFETMVSEATAPDSVAMVGLLSACSHAGMYDEGRKYFSTME 401

Query: 176 ANGFGSNPFLNN--ALINMYARCGNLKKARAIFDGMPRKTV-VSWTAIIGGYGIHGHGEV 232
            + +   P L +   ++++  R G L +AR +   MP       W A++G   IH + E+
Sbjct: 402 RD-YCLRPKLEHYTCMVDLLGRAGRLDEARELIASMPMAADGAVWGALLGACKIHKNVEM 460

Query: 233 AVQLFDEMLK 242
             + F+ ++ 
Sbjct: 461 GEEAFERVVS 470



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 122/253 (48%), Gaps = 24/253 (9%)

Query: 101 GRKLFDQVP------EKGLITWNAMISGYAQNGLATHVLELYREMK-SLGVCPDAVTFVG 153
            R+L D++P            +N++ISG A +G+      L+R M+ + GV  DAVT + 
Sbjct: 113 ARQLLDELPLASTPPATARTAFNSLISGCALHGVPAGCFSLFRRMRVAAGVRFDAVTLLA 172

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR--CGNLKKARAIFDGMPR 211
            L   A LG   +  ++      +G  +N  + N L+++YAR   G    AR +F+ MPR
Sbjct: 173 -LVPVAPLG---IVPQLHALAARSGLAANTSVANCLVSVYARGGGGGASLARQVFEEMPR 228

Query: 212 --KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS---GIRPDGTAFVSVLSACSHAGLTD 266
             + +VSW A+I  +  +G    AV+L+  M      G+ PD    V VLS+C+H G   
Sbjct: 229 ASRDLVSWNAVISAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSCAHTGARR 288

Query: 267 KGLEYFYGMKNKY-GLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAV--WGAL 323
            GL+    +++   G +        +++   R G L +A EL + M   P+ +V  W  L
Sbjct: 289 VGLDVERYVRDTIPGFRDNLPLCNALINFHARCGSLAQAQELFDEM---PERSVVSWTTL 345

Query: 324 LGACKIHKNVELA 336
           +    +H   ++A
Sbjct: 346 IIGYGMHGQGDIA 358


>gi|297740128|emb|CBI30310.3| unnamed protein product [Vitis vinifera]
          Length = 543

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 251/349 (71%), Positives = 288/349 (82%), Gaps = 1/349 (0%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE+  S +L VCYNALI+GY LNS  S+AV LF +MR++GV +N+VTML L+P+C  P
Sbjct: 113 VFDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGP 172

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
            +L  G   H   V+FGLD D SVGNCL+TMYV+CGSVD+ RKLFD +PEKGLITWNAMI
Sbjct: 173 IHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMI 232

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGYAQNGLA HVL+LYR+M+  G+ PD VT VGVLSSCAHLGAH+ G EVEQ+I+ +GFG
Sbjct: 233 SGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFG 292

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            NPFL NALINMYARCGNL KARAIFDGM  K V+SWTAII GYG+HG GE+AVQLFDEM
Sbjct: 293 FNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEM 352

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           + S   PDG AFVSVLSACSHAGLT+KGL YF  M+  YGLQPGPEHY+C+VDLLGRAG+
Sbjct: 353 ISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGR 412

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGK-VIKLEP 348
           L EA +LI SM VEPDGAVWGALLGACKIH+NVELAELAF K  +K EP
Sbjct: 413 LEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKRKLKKEP 461



 Score =  278 bits (710), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 181/536 (33%), Positives = 268/536 (50%), Gaps = 44/536 (8%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T  +NA +          EA++L+ +M   G   N+ T       C        G   H 
Sbjct: 21  TASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHG 80

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV--PEKGLITWNAMISGYAQNGLA 129
             +K G + +  V   L++MY KC ++   RK+FD+        + +NA+I+GY+ N   
Sbjct: 81  HVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRF 140

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCA---HLGAHSVGLEVEQQIQANGFGSNPFLN 186
           +  + L+R+M+  GV  +AVT +G++  CA   HLG    G  +       G   +  + 
Sbjct: 141 SDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLG---FGTSLHACSVRFGLDGDLSVG 197

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           N L+ MY RCG++  AR +FDGMP K +++W A+I GY  +G     + L+ +M  +GI 
Sbjct: 198 NCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIV 257

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMK-NKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
           PD    V VLS+C+H G    G E    ++ + +G  P  ++   ++++  R G L +A 
Sbjct: 258 PDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKN--ALINMYARCGNLVKAR 315

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE--PMNTGYYVLLSNIYSE 363
            + + M  E +   W A++    +H   ELA   F ++I  +  P    +  +LS     
Sbjct: 316 AIFDGM-TEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHA 374

Query: 364 ARNLDGIMRVRMMMRERRLKKDP-----------------------GYSYVELKGRVHLF 400
                G+     M R+  L+  P                       G   VE  G V   
Sbjct: 375 GLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGA 434

Query: 401 MVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIIN 460
           ++G    H+ VE       L  L  E    K+  +  +EE +    VHSEKLAIAFG+IN
Sbjct: 435 LLGACKIHRNVE-------LAELAFEKRKLKKEPESRNEELITGMGVHSEKLAIAFGLIN 487

Query: 461 TSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           T PGTEI V+KNLR+CGDCHLF+KLVS+IVDRQ +VRDATRFHHFK+G CSCKDYW
Sbjct: 488 TEPGTEITVIKNLRVCGDCHLFLKLVSEIVDRQLVVRDATRFHHFKNGVCSCKDYW 543


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 249/510 (48%), Positives = 338/510 (66%), Gaps = 8/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + YNA+ISGY  N     AV+LF ++   G  +NS T++ L+P+ +   +L L      +
Sbjct: 281 ISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNL 340

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G+ L  SV   L T+Y +   V + R+LFD+ PEK L +WNAMISGY QNGL    
Sbjct: 341 SLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRA 400

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + L++EM    + P+ VT   +LS+CA LGA S+G  V   I++    SN +++ AL++M
Sbjct: 401 ISLFQEMMP-QLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDM 459

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG++ +AR +FD M  K VV+W A+I GYG+HGHG+ A++LF EML+SGI P G  F
Sbjct: 460 YAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTF 519

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +S+L ACSH+GL  +G E F+ M N YG QP  EHY CMVD+LGRAGQL  ALE IE M 
Sbjct: 520 LSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMP 579

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           +EP  AVWGALLGAC IHKN E+A +A  ++ +L+P N GYYVLLSNIYS  RN      
Sbjct: 580 LEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAAS 639

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHD---- 428
           VR ++++R+L K PG + +E+  + ++F  GDR+H Q   I+ ML+KL   ++E      
Sbjct: 640 VRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAE 699

Query: 429 --GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
              T   D ++ E+ L    VHSEKLAIAFG+I+T PGTEI ++KNLR+C DCH   K +
Sbjct: 700 TVTTALHDVEDEEKELM-VNVHSEKLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFI 758

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SKI +R  +VRDA RFHHFK+G CSC DYW
Sbjct: 759 SKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 163/319 (51%), Gaps = 3/319 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           TV +N +ISG+  NS   +++ +F  M + G+  +S T+  +L    +     LGM   C
Sbjct: 179 TVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQC 238

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           +  K GL  D  V   L+++Y KCG    GR LFDQ+ +  LI++NAMISGY  N     
Sbjct: 239 LASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETES 298

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            + L+RE+ + G   ++ T VG++          +   ++      G    P ++ AL  
Sbjct: 299 AVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTT 358

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +Y R   ++ AR +FD  P K++ SW A+I GY  +G  + A+ LF EM+   + P+   
Sbjct: 359 VYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVT 417

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
             S+LSAC+  G    G ++ +G+     L+      T +VD+  + G + EA +L + +
Sbjct: 418 VTSILSACAQLGALSIG-KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFD-L 475

Query: 312 LVEPDGAVWGALLGACKIH 330
           +V+ +   W A++    +H
Sbjct: 476 MVDKNVVTWNAMITGYGLH 494



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 184/404 (45%), Gaps = 54/404 (13%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +N LI G+  N L   ++ L+  +R+   +  ++ T    +          +G+  H   
Sbjct: 80  FNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHS 139

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           +  G+  +  VG+ ++ +Y K    +  RK+FD +PE+  + WN MISG+++N      +
Sbjct: 140 IVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSI 199

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
            ++ +M  +G+  D+ T   VL++ A L  + +G+ ++      G  S+ ++   LI++Y
Sbjct: 200 RVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLY 259

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
           ++CG   K R +FD + +  ++S+ A+I GY  +   E AV LF E+L SG R + +  V
Sbjct: 260 SKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLV 319

Query: 254 SVLSA---CSHAGLTDKGLEYFYGMKNKYGLQP-------------------------GP 285
            ++      +H  L+   L     +K    LQP                          P
Sbjct: 320 GLIPVYLPFNHLQLSR--LIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESP 377

Query: 286 EH----YTCMVDLLGRAGQLNEALELIESML--VEPDGAVWGALLGACKIHKNVELAELA 339
           E     +  M+    + G  + A+ L + M+  + P+     ++L AC      +L  L+
Sbjct: 378 EKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSAC-----AQLGALS 432

Query: 340 FGK----VIKLEPMNTGYYV--LLSNIYS------EARNLDGIM 371
            GK    +IK E + +  YV   L ++Y+      EAR L  +M
Sbjct: 433 IGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLM 476



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 131/274 (47%), Gaps = 13/274 (4%)

Query: 77  GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY 136
           G+  D S    L   +   G+V + R+LF++V +  L  +N +I G++ NGL    + LY
Sbjct: 41  GIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLY 100

Query: 137 REM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR 195
             + K   + PD  T+   +S+ + L    VG+ +      +G  SN F+ +A++++Y +
Sbjct: 101 THLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFK 160

Query: 196 CGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSV 255
               + AR +FD MP +  V W  +I G+  + + E ++++F +ML  G+  D T   +V
Sbjct: 161 FTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATV 220

Query: 256 LSACSHAGLTDKGLEYFYGM-----KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
           L+A +         EY  GM      +K GL       T ++ L  + G+  +   L + 
Sbjct: 221 LTAVAELQ------EYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQ 274

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVI 344
            + +PD   + A++     +   E A   F +++
Sbjct: 275 -IDQPDLISYNAMISGYTFNHETESAVTLFRELL 307


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 249/510 (48%), Positives = 338/510 (66%), Gaps = 8/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + YNA+ISGY  N     AV+LF ++   G  +NS T++ L+P+ +   +L L      +
Sbjct: 281 ISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNL 340

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G+ L  SV   L T+Y +   V + R+LFD+ PEK L +WNAMISGY QNGL    
Sbjct: 341 SLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRA 400

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + L++EM    + P+ VT   +LS+CA LGA S+G  V   I++    SN +++ AL++M
Sbjct: 401 ISLFQEMMP-QLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDM 459

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG++ +AR +FD M  K VV+W A+I GYG+HGHG+ A++LF EML+SGI P G  F
Sbjct: 460 YAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTF 519

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +S+L ACSH+GL  +G E F+ M N YG QP  EHY CMVD+LGRAGQL  ALE IE M 
Sbjct: 520 LSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMP 579

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           +EP  AVWGALLGAC IHKN E+A +A  ++ +L+P N GYYVLLSNIYS  RN      
Sbjct: 580 LEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAAS 639

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHD---- 428
           VR ++++R+L K PG + +E+  + ++F  GDR+H Q   I+ ML+KL   ++E      
Sbjct: 640 VRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAE 699

Query: 429 --GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
              T   D ++ E+ L    VHSEKLAIAFG+I+T PGTEI ++KNLR+C DCH   K +
Sbjct: 700 TVTTALHDVEDEEKELM-VNVHSEKLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFI 758

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SKI +R  +VRDA RFHHFK+G CSC DYW
Sbjct: 759 SKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 163/319 (51%), Gaps = 3/319 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           TV +N +ISG+  NS   +++ +F  M + G+  +S T+  +L    +     LGM   C
Sbjct: 179 TVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQC 238

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           +  K GL  D  V   L+++Y KCG    GR LFDQ+ +  LI++NAMISGY  N     
Sbjct: 239 LASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETES 298

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            + L+RE+ + G   ++ T VG++          +   ++      G    P ++ AL  
Sbjct: 299 AVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTT 358

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +Y R   ++ AR +FD  P K++ SW A+I GY  +G  + A+ LF EM+   + P+   
Sbjct: 359 VYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVT 417

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
             S+LSAC+  G    G ++ +G+     L+      T +VD+  + G + EA +L + +
Sbjct: 418 VTSILSACAQLGALSIG-KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFD-L 475

Query: 312 LVEPDGAVWGALLGACKIH 330
           +V+ +   W A++    +H
Sbjct: 476 MVDKNVVTWNAMITGYGLH 494



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 185/404 (45%), Gaps = 54/404 (13%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +N LI G+  N L   ++ L+  +R++  +  ++ T    +          +G+  H   
Sbjct: 80  FNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHS 139

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           +  G+  +  VG+ ++ +Y K    +  RK+FD +PE+  + WN MISG+++N      +
Sbjct: 140 IVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSI 199

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
            ++ +M  +G+  D+ T   VL++ A L  + +G+ ++      G  S+ ++   LI++Y
Sbjct: 200 RVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLY 259

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
           ++CG   K R +FD + +  ++S+ A+I GY  +   E AV LF E+L SG R + +  V
Sbjct: 260 SKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLV 319

Query: 254 SVLSA---CSHAGLTDKGLEYFYGMKNKYGLQP-------------------------GP 285
            ++      +H  L+   L     +K    LQP                          P
Sbjct: 320 GLIPVYLPFNHLQLSR--LIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESP 377

Query: 286 EH----YTCMVDLLGRAGQLNEALELIESML--VEPDGAVWGALLGACKIHKNVELAELA 339
           E     +  M+    + G  + A+ L + M+  + P+     ++L AC      +L  L+
Sbjct: 378 EKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSAC-----AQLGALS 432

Query: 340 FGK----VIKLEPMNTGYYV--LLSNIYS------EARNLDGIM 371
            GK    +IK E + +  YV   L ++Y+      EAR L  +M
Sbjct: 433 IGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLM 476



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 131/274 (47%), Gaps = 13/274 (4%)

Query: 77  GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY 136
           G+  D S    L   +   G+V + R+LF++V +  L  +N +I G++ NGL    + LY
Sbjct: 41  GIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLY 100

Query: 137 REM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR 195
             + K   + PD  T+   +S+ + L    VG+ +      +G  SN F+ +A++++Y +
Sbjct: 101 THLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFK 160

Query: 196 CGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSV 255
               + AR +FD MP +  V W  +I G+  + + E ++++F +ML  G+  D T   +V
Sbjct: 161 FTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATV 220

Query: 256 LSACSHAGLTDKGLEYFYGM-----KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
           L+A +         EY  GM      +K GL       T ++ L  + G+  +   L + 
Sbjct: 221 LTAVAELQ------EYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQ 274

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVI 344
            + +PD   + A++     +   E A   F +++
Sbjct: 275 -IDQPDLISYNAMISGYTFNHETESAVTLFRELL 307


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 247/506 (48%), Positives = 341/506 (67%), Gaps = 4/506 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NA+I GY LNS   EA++ F +M+ +G++ NS+TM+ +LP C     L  G   H   +
Sbjct: 290 WNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAI 349

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           + G + +  VGN L+ MY KCG+V+   KLF+++P+K ++ WNA+ISGY+Q+G     L 
Sbjct: 350 RSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALA 409

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+ EM++ G+ PD+   V VL +CAH  A   G ++      +GF SN  +   L+++YA
Sbjct: 410 LFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYA 469

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CGN+  A+ +F+ MP + VVSWT +I  YGIHGHGE A+ LF +M ++G + D  AF +
Sbjct: 470 KCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTA 529

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           +L+ACSHAGL D+GL+YF  MK+ YGL P  EHY C+VDLLGRAG L+EA  +I++M +E
Sbjct: 530 ILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLE 589

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
           PD  VWGALLGAC+IH N+EL E A   + +L+P N GYYVLLSNIY+EA+  + + ++R
Sbjct: 590 PDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLR 649

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH---DGTK 431
            MM+E+ +KK PG S V +   V  F+VGDR H Q+ +IY ML+ L   +++      T 
Sbjct: 650 KMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILYEQMRKAGYVPNTN 709

Query: 432 RSDQKNSEE-HLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIV 490
            + Q   EE   N    HSEKLAI+FGIINTSPG  I +MKNLR+C DCH   K +SKIV
Sbjct: 710 LALQDVEEEAKENILSSHSEKLAISFGIINTSPGIPIRIMKNLRVCSDCHNATKFISKIV 769

Query: 491 DRQFIVRDATRFHHFKSGFCSCKDYW 516
            R+ IVRDA RFHH K+GFCSC DYW
Sbjct: 770 GREIIVRDANRFHHVKNGFCSCGDYW 795



 Score =  238 bits (608), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 131/343 (38%), Positives = 196/343 (57%), Gaps = 4/343 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD   K     V +NA+I+GY  N    EA++LF +M+  G++ NS T++ ++P+C   
Sbjct: 177 VFDRMPKRD--VVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHL 234

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   HC  ++ G++ D  V N L+ MY KCG+V+   KLF+++P + + +WNA+I
Sbjct: 235 LALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAII 294

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GY+ N      L  +  M+  G+ P+++T V VL +CAHL A   G ++      +GF 
Sbjct: 295 GGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFE 354

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           SN  + NAL+NMYA+CGN+  A  +F+ MP+K VV+W AII GY  HGH   A+ LF EM
Sbjct: 355 SNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEM 414

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
              GI+PD  A VSVL AC+H    ++G +  +G   + G +      T +VD+  + G 
Sbjct: 415 QAQGIKPDSFAIVSVLPACAHFLALEQGKQ-IHGYTIRSGFESNVVVGTGLVDIYAKCGN 473

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
           +N A +L E M  E D   W  ++ A  IH + E A   F K+
Sbjct: 474 VNTAQKLFERM-PEQDVVSWTTMILAYGIHGHGEDALALFSKM 515



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 104/319 (32%), Positives = 173/319 (54%), Gaps = 2/319 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +   I GYV N   ++A+ L+ +M+  G+  + +  L ++  C     L  G   H 
Sbjct: 85  AVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHE 144

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +  G + D  VG  L +MY KCGS++  R++FD++P++ +++WNA+I+GY+QNG    
Sbjct: 145 DIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYE 204

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L L+ EM+  G+ P++ T V V+  CAHL A   G ++      +G  S+  + N L+N
Sbjct: 205 ALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVN 264

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+CGN+  A  +F+ MP + V SW AIIGGY ++     A+  F+ M   GI+P+   
Sbjct: 265 MYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSIT 324

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            VSVL AC+H    ++G +  +G   + G +        +V++  + G +N A +L E M
Sbjct: 325 MVSVLPACAHLFALEQG-QQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERM 383

Query: 312 LVEPDGAVWGALLGACKIH 330
             + +   W A++     H
Sbjct: 384 -PKKNVVAWNAIISGYSQH 401



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 135/250 (54%), Gaps = 10/250 (4%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+ISGY  +    EA++LF +M+ QG++ +S  ++ +LP C     L  G   H  
Sbjct: 389 VAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGY 448

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ G + +  VG  L+ +Y KCG+V+  +KLF+++PE+ +++W  MI  Y  +G     
Sbjct: 449 TIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDA 508

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           L L+ +M+  G   D + F  +L++C+H G    GL+  Q ++++ +G  P L +   L+
Sbjct: 509 LALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSD-YGLAPKLEHYACLV 567

Query: 191 NMYARCGNLKKARAIFDGM---PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           ++  R G+L +A  I   M   P   V  W A++G   IH + E+  Q    + +  + P
Sbjct: 568 DLLGRAGHLDEANGIIKNMSLEPDANV--WGALLGACRIHCNIELGEQAAKHLFE--LDP 623

Query: 248 DGTAFVSVLS 257
           D   +  +LS
Sbjct: 624 DNAGYYVLLS 633



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 2/115 (1%)

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270
           R   V W   I GY  +G    A++L+ +M ++GI PD   F+SV+ AC        G +
Sbjct: 82  RNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRK 141

Query: 271 YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
               +  + G +      T +  +  + G L  A ++ + M  + D   W A++ 
Sbjct: 142 VHEDIIAR-GFESDVIVGTALASMYTKCGSLENARQVFDRM-PKRDVVSWNAIIA 194


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 249/509 (48%), Positives = 330/509 (64%), Gaps = 6/509 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V YNA+ISGY  N+    +V LF ++   G ++NS +++ L+P+    G+L L  C H  
Sbjct: 274 VSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGF 333

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
           C K G+  + SV   L T+Y +   ++  R LFD+  EK L +WNAMISGYAQNGL    
Sbjct: 334 CTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKA 393

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + L++EM+   V P+ VT   +LS+CA LGA S+G  V   I    F SN F++ ALI+M
Sbjct: 394 ISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDM 453

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG++ +A+ +F  MP K  V+W A+I GYG+HG+G  A+ LF+EML S + P G  F
Sbjct: 454 YAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTF 513

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +SVL ACSHAGL  +G E F  M + +G +P PEHY CMVDLLGRAG L++AL+ I  M 
Sbjct: 514 LSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMP 573

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           VEP   VWGALLGAC IHK+  LA LA  K+ +L+P N GYYVLLSNIYS  +N      
Sbjct: 574 VEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAAS 633

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL-----ENLVQEH 427
           VR +++ R+L K PG + +E+   +H+F  GD++H Q   IY ML+KL     E   Q  
Sbjct: 634 VRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAMLEKLTGKMREAGFQTE 693

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
            GT   D +  E+ L   +VHSEKLAIAFG+I + PGTEI ++KNLR+C DCH   K +S
Sbjct: 694 TGTALHDVEEEEKELM-VKVHSEKLAIAFGLITSEPGTEIRIIKNLRVCLDCHNATKFIS 752

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KI +R  +VRDA RFHHFK G CSC DYW
Sbjct: 753 KITERVIVVRDANRFHHFKDGICSCGDYW 781



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 163/319 (51%), Gaps = 2/319 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           TV +N ++SG V NS   EA+ +FG M + G+  +S T+  +LP   +   L LGM   C
Sbjct: 172 TVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQC 231

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + +K G      V   L  +Y KCG ++  R LF Q+ +  L+++NAMISGY  N     
Sbjct: 232 LAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETES 291

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            + L++E+   G   ++ + VG++      G   +   +      +G  SN  ++ AL  
Sbjct: 292 SVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTT 351

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +Y+R   ++ AR +FD    K++ SW A+I GY  +G  E A+ LF EM K  +RP+   
Sbjct: 352 VYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVT 411

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
             S+LSAC+  G    G ++ + + N+   +      T ++D+  + G + EA  L  SM
Sbjct: 412 VTSILSACAQLGALSLG-KWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLF-SM 469

Query: 312 LVEPDGAVWGALLGACKIH 330
           + E +   W A++    +H
Sbjct: 470 MPEKNAVTWNAMISGYGLH 488



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 181/406 (44%), Gaps = 48/406 (11%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           YN LI  + LN+  S AVSL+  +R+   +E ++ T   ++        L L +  H I 
Sbjct: 76  YNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASS-LGLGLLLHAHSIV 134

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
             FG DL   VG+ ++  Y K   V   RK+FD + E+  + WN M+SG  +N      +
Sbjct: 135 AGFGSDL--FVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAI 192

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
            ++ +M   G+  D+ T   VL   A L   ++G+ ++      GF S+ ++   L  +Y
Sbjct: 193 LIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLY 252

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
           ++CG ++ AR +F  + +  +VS+ A+I GY  +   E +V+LF E+L SG + + ++ V
Sbjct: 253 SKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIV 312

Query: 254 SV-----------LSACSHAGLTD----------KGLEYFYGMKNKY---------GLQP 283
            +           L+ C H   T             L   Y   N+            + 
Sbjct: 313 GLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEK 372

Query: 284 GPEHYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGACKIHKNVELAELAF 340
               +  M+    + G   +A+ L + M    V P+     ++L AC      +L  L+ 
Sbjct: 373 SLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSAC-----AQLGALSL 427

Query: 341 GK----VIKLEPMNTGYYV--LLSNIYSEARNLDGIMRVRMMMRER 380
           GK    +I  E   +  +V   L ++Y++  ++    R+  MM E+
Sbjct: 428 GKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEK 473


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 246/509 (48%), Positives = 323/509 (63%), Gaps = 6/509 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V YNALISG+  N     AV  F ++   G  ++S TM+ L+P+    G+L L  C    
Sbjct: 271 VSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGF 330

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
           CVK G  L  SV   L T+Y +   +D  R+LFD+  EK +  WNAMISGYAQ+GL    
Sbjct: 331 CVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMA 390

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + L++EM +    P+ VT   +LS+CA LGA S G  V Q I++     N +++ ALI+M
Sbjct: 391 ISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDM 450

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CGN+ +A  +FD    K  V+W  +I GYG+HG+G+ A++LF+EML  G +P    F
Sbjct: 451 YAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTF 510

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +SVL ACSHAGL  +G E F+ M NKY ++P  EHY CMVD+LGRAGQL +ALE I  M 
Sbjct: 511 LSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMP 570

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           VEP  AVWG LLGAC IHK+  LA +A  ++ +L+P N GYYVLLSNIYS  RN      
Sbjct: 571 VEPGPAVWGTLLGACMIHKDTNLARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAAS 630

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE-----H 427
           VR  +++R L K PG + +E+ G  H+F+ GDR+H QT  IY  L++L   ++E      
Sbjct: 631 VREAVKKRNLSKTPGCTLIEVNGTPHVFVCGDRSHSQTTSIYAKLEELTGKMREMGYQSE 690

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
             T   D +  E+ L    VHSEKLAIAFG+I T PGTEI ++KNLR+C DCH   K +S
Sbjct: 691 TVTALHDVEEEEKELM-FNVHSEKLAIAFGLITTEPGTEIRIIKNLRVCLDCHAATKFIS 749

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KI +R  +VRDA RFHHFK G CSC DYW
Sbjct: 750 KITERVIVVRDANRFHHFKDGICSCGDYW 778



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 175/348 (50%), Gaps = 4/348 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           TV +N +I+G V N    ++V +F  M  QGV ++S T+  +LP   +   + +GM   C
Sbjct: 169 TVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQC 228

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + +K G   D  V   L++++ KC  VD  R LF  + +  L+++NA+ISG++ NG    
Sbjct: 229 LALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETEC 288

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            ++ +RE+   G    + T VG++   +  G   +   ++     +G    P ++ AL  
Sbjct: 289 AVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTT 348

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +Y+R   +  AR +FD    KTV +W A+I GY   G  E+A+ LF EM+ +   P+   
Sbjct: 349 IYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVT 408

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
             S+LSAC+  G    G      +K+K  L+      T ++D+  + G ++EA +L + +
Sbjct: 409 ITSILSACAQLGALSFGKSVHQLIKSK-NLEQNIYVSTALIDMYAKCGNISEASQLFD-L 466

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKL--EPMNTGYYVLL 357
             E +   W  ++    +H   + A   F +++ L  +P +  +  +L
Sbjct: 467 TSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVL 514



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 115/236 (48%), Gaps = 6/236 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDES + T     +NA+ISGY  + L   A+SLF +M       N VT+  +L  C   
Sbjct: 362 LFDESSEKT--VAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQL 419

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  G   H +     L+ +  V   L+ MY KCG++    +LFD   EK  +TWN MI
Sbjct: 420 GALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMI 479

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GY  +G     L+L+ EM  LG  P +VTF+ VL +C+H G    G E+   +  N + 
Sbjct: 480 FGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAM-VNKYR 538

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMPRKT-VVSWTAIIGGYGIHGHGEVA 233
             P   +   ++++  R G L+KA      MP +     W  ++G   IH    +A
Sbjct: 539 IEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLA 594



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 177/379 (46%), Gaps = 20/379 (5%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N LI G+  +   S        ++   +  ++ T    +    D     LGMC H   V
Sbjct: 74  FNVLIKGFSFSPDASSISFYTHLLKNTTLSPDNFTYAFAISASPDDN---LGMCLHAHAV 130

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             G D +  V + L+ +Y K   V Y RK+FD++P++  + WN MI+G  +N      ++
Sbjct: 131 VDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQ 190

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           ++++M + GV  D+ T   VL + A +    VG+ ++      GF  + ++   LI++++
Sbjct: 191 VFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFS 250

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +C ++  AR +F  + +  +VS+ A+I G+  +G  E AV+ F E+L SG R   +  V 
Sbjct: 251 KCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVG 310

Query: 255 VLSACS-----HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
           ++   S     H     +G    + +K+   LQP     T +  +  R  +++ A +L +
Sbjct: 311 LIPVSSPFGHLHLACCIQG----FCVKSGTILQPSVS--TALTTIYSRLNEIDLARQLFD 364

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDG 369
               E   A W A++         E+A   F +++  E   T   V +++I S    L  
Sbjct: 365 ES-SEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTE--FTPNPVTITSILSACAQLGA 421

Query: 370 I---MRVRMMMRERRLKKD 385
           +     V  +++ + L+++
Sbjct: 422 LSFGKSVHQLIKSKNLEQN 440



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 124/275 (45%), Gaps = 5/275 (1%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   ++ G   D +    L       G+  + R LF  VP+  +  +N +I G++ +  A
Sbjct: 28  HAQLIRNGYQHDLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKGFSFSPDA 87

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
           + +      +K+  + PD  T+   +S+       ++G+ +      +GF SN F+ +AL
Sbjct: 88  SSISFYTHLLKNTTLSPDNFTYAFAISASPD---DNLGMCLHAHAVVDGFDSNLFVASAL 144

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           +++Y +   +  AR +FD MP +  V W  +I G   +   + +VQ+F +M+  G+R D 
Sbjct: 145 VDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDS 204

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
           T   +VL A +       G+     +  K G        T ++ +  +   ++ A  L+ 
Sbjct: 205 TTVATVLPAVAEMQEVKVGMG-IQCLALKLGFHFDDYVLTGLISVFSKCEDVDTA-RLLF 262

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI 344
            M+ +PD   + AL+     +   E A   F +++
Sbjct: 263 GMIRKPDLVSYNALISGFSCNGETECAVKYFRELL 297


>gi|76556518|emb|CAJ32535.1| pentatricopeptide repeat-containing protein [Hordeum vulgare subsp.
           vulgare]
          Length = 652

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 252/525 (48%), Positives = 350/525 (66%), Gaps = 26/525 (4%)

Query: 5   SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQ--GVEINSVTMLCLLPICVDPGY 62
           S     +   +N+LISG  L++L     +LF +MR    G+  N+VT+L LLP  V P  
Sbjct: 132 STPPATVLTAFNSLISGCALHALTPACFALFRRMRVHVAGLRFNAVTLLALLP--VAPAT 189

Query: 63  LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP--EKGLITWNAMI 120
           +   +    +  + GL    +V NCL+++Y +  S    R++FD++P   + L++W A++
Sbjct: 190 VVPQL--QALAAQSGLASRTTVANCLISVYGR-SSPTLARQVFDEMPLATRDLVSWTAVL 246

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN--G 178
           S +AQ GLA   LELYR M+  GV PDA+T VGVLSSC+HL A SVGL+V++ ++    G
Sbjct: 247 SAHAQGGLAVDALELYRRMRGHGVEPDALTLVGVLSSCSHLAARSVGLDVDRYVRQRLPG 306

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
           F +N  L +ALIN +ARCG+L +A+ +FD MPRK++VSWTA+I GYG+HGHG++A+  F 
Sbjct: 307 FRANVQLCSALINFHARCGSLPQAQQLFDEMPRKSIVSWTALITGYGMHGHGDIAINFFQ 366

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
            M+  GIRPD  + V++LSACSHAG  ++G +YF+ M++ Y L+P  EHY CMVDLLGRA
Sbjct: 367 RMVSQGIRPDNVSMVALLSACSHAGKYEEGCKYFFAMESTYKLRPTLEHYACMVDLLGRA 426

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           G+L EA ELI SM +  DG+VWGALLGACKIHKNVE  E AF  VI LEP N GYYVL++
Sbjct: 427 GRLEEARELISSMPMPADGSVWGALLGACKIHKNVEAGEEAFKHVIMLEPSNVGYYVLMA 486

Query: 359 NIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD 418
           N+Y+++   DG+ RVR MMRER LKK+PG + V      HL M  D +H Q   IY ++ 
Sbjct: 487 NMYTDSGQQDGVARVRAMMRERGLKKEPGRTQVVR----HLLMDDDHSHPQAKRIYELVI 542

Query: 419 KLENLVQE-------HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMK 471
           +LE +V+E       ++G   +D+K +   +     HSEKLA+ F ++NT    EIVVM 
Sbjct: 543 ELEQMVKEKMNVTAXNEGKLSADKKVAAPLVG---THSEKLAVPFSLLNTV-DVEIVVMM 598

Query: 472 NLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           NLR+CGDCH  +K+ S I +R F+VRD++ FH F+ G C C+DYW
Sbjct: 599 NLRVCGDCHSLLKMASAIANRVFLVRDSSCFHRFEVGACPCQDYW 643



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 143/301 (47%), Gaps = 30/301 (9%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE   +T   V + A++S +    L  +A+ L+ +MR  GVE +++T++ +       
Sbjct: 228 VFDEMPLATRDLVSWTAVLSAHAQGGLAVDALELYRRMRGHGVEPDALTLVGV------- 280

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVG-------------NCLMTMYVKCGSVDYGRKLFDQ 107
               L  C H      GLD+D  V              + L+  + +CGS+   ++LFD+
Sbjct: 281 ----LSSCSHLAARSVGLDVDRYVRQRLPGFRANVQLCSALINFHARCGSLPQAQQLFDE 336

Query: 108 VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVG 167
           +P K +++W A+I+GY  +G     +  ++ M S G+ PD V+ V +LS+C+H G +  G
Sbjct: 337 MPRKSIVSWTALITGYGMHGHGDIAINFFQRMVSQGIRPDNVSMVALLSACSHAGKYEEG 396

Query: 168 LEVEQQIQANGFGSNPFLNN--ALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGY 224
            +    +++  +   P L +   ++++  R G L++AR +   MP     S W A++G  
Sbjct: 397 CKYFFAMEST-YKLRPTLEHYACMVDLLGRAGRLEEARELISSMPMPADGSVWGALLGAC 455

Query: 225 GIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG 284
            IH + E   + F  ++   + P    +  +++          G+     M  + GL+  
Sbjct: 456 KIHKNVEAGEEAFKHVIM--LEPSNVGYYVLMANMYTDSGQQDGVARVRAMMRERGLKKE 513

Query: 285 P 285
           P
Sbjct: 514 P 514



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 145/306 (47%), Gaps = 25/306 (8%)

Query: 70  HCICVKFGL--DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG------LITWNAMIS 121
           H +  K GL    D  + + L++ Y + G +   R+L D++P         L  +N++IS
Sbjct: 88  HALAAKGGLVPASDSYILSALLSSYCRLGLLPCARQLLDEMPAASTPPATVLTAFNSLIS 147

Query: 122 GYAQNGLATHVLELYREMK--SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           G A + L      L+R M+    G+  +AVT + +L     +   +V  +++     +G 
Sbjct: 148 GCALHALTPACFALFRRMRVHVAGLRFNAVTLLALLP----VAPATVVPQLQALAAQSGL 203

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKT--VVSWTAIIGGYGIHGHGEVAVQLF 237
            S   + N LI++Y R  +   AR +FD MP  T  +VSWTA++  +   G    A++L+
Sbjct: 204 ASRTTVANCLISVYGR-SSPTLARQVFDEMPLATRDLVSWTAVLSAHAQGGLAVDALELY 262

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEY-FYGMKNKYGLQPGPEHYTCMVDLLG 296
             M   G+ PD    V VLS+CSH      GL+   Y  +   G +   +  + +++   
Sbjct: 263 RRMRGHGVEPDALTLVGVLSSCSHLAARSVGLDVDRYVRQRLPGFRANVQLCSALINFHA 322

Query: 297 RAGQLNEALELIESMLVEPDGAV--WGALLGACKIHKNVELAELAFGKVIK--LEPMNTG 352
           R G L +A +L + M   P  ++  W AL+    +H + ++A   F +++   + P N  
Sbjct: 323 RCGSLPQAQQLFDEM---PRKSIVSWTALITGYGMHGHGDIAINFFQRMVSQGIRPDNVS 379

Query: 353 YYVLLS 358
              LLS
Sbjct: 380 MVALLS 385



 Score = 42.0 bits (97), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 72/191 (37%), Gaps = 15/191 (7%)

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF--GSNPFLNNALINMYARCGNLKKAR 203
           P A+     L  CA L   S   +V       G    S+ ++ +AL++ Y R G L  AR
Sbjct: 63  PQALGLPSALICCAALSLPSGVAQVHALAAKGGLVPASDSYILSALLSSYCRLGLLPCAR 122

Query: 204 AIFDGMPRKT------VVSWTAIIGGYGIHGHGEVAVQLFDEML--KSGIRPDGTAFVSV 255
            + D MP  +      + ++ ++I G  +H        LF  M    +G+R +    +++
Sbjct: 123 QLLDEMPAASTPPATVLTAFNSLISGCALHALTPACFALFRRMRVHVAGLRFNAVTLLAL 182

Query: 256 LSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEP 315
           L       +          +  + GL        C++ + GR+          E  L   
Sbjct: 183 LPVAPATVVPQ-----LQALAAQSGLASRTTVANCLISVYGRSSPTLARQVFDEMPLATR 237

Query: 316 DGAVWGALLGA 326
           D   W A+L A
Sbjct: 238 DLVSWTAVLSA 248


>gi|125595828|gb|EAZ35608.1| hypothetical protein OsJ_19898 [Oryza sativa Japonica Group]
          Length = 602

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 240/449 (53%), Positives = 318/449 (70%), Gaps = 12/449 (2%)

Query: 80  LDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE--KGLITWNAMISGYAQNGLATHVLELYR 137
           L +   +CL T           R++F+++P   + L++WNA+IS +AQNGLA   +ELYR
Sbjct: 154 LPWPTASCLSTRAAAAAGASLARQVFEEMPRASRDLVSWNAVISAHAQNGLAVEAVELYR 213

Query: 138 EMKSL---GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN--GFGSNPFLNNALINM 192
            M+     GV PDAVT VGVLSSCAH GA  VGL+VE+ ++    GF  N  L NALIN 
Sbjct: 214 RMRGPEGGGVEPDAVTLVGVLSSCAHTGARRVGLDVERYVRDTIPGFRDNLPLCNALINF 273

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           +ARCG+L +A+ +FD MP ++VVSWT +I GYG+HG G++AV LF+ M+     PD  A 
Sbjct: 274 HARCGSLAQAQELFDEMPERSVVSWTTLIIGYGMHGQGDIAVDLFETMVSEATAPDSVAM 333

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           V +LSACSHAG+ D+G +YF  M+  Y L+P  EHYTCMVDLLGRAG+L+EA ELI SM 
Sbjct: 334 VGLLSACSHAGMYDEGRKYFSTMERDYCLRPKLEHYTCMVDLLGRAGRLDEARELIASMP 393

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           +  DGAVWGALLGACKIHKNVE+ E AF +V+ LEP N GYYVL++NIY++A  LDG+ +
Sbjct: 394 MAADGAVWGALLGACKIHKNVEMGEEAFERVVSLEPANVGYYVLMANIYADAGQLDGVAK 453

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR  MR R L+K+PG SYVE KG+VHLFM  D +H Q   IY ++ +LE +V+E  G   
Sbjct: 454 VRAAMRRRGLRKEPGCSYVEHKGKVHLFMADDHSHPQARRIYELVVELERMVKEKTGGDV 513

Query: 433 SDQKNSEEHLNDTEV-----HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
            +++  +       V     HSEKLA+AFG++NT  G+EIVV+KNLR+CGDCH F+K +S
Sbjct: 514 VEERAEKAVAEAAAVPLVGFHSEKLAVAFGLLNTEAGSEIVVIKNLRVCGDCHSFLKTIS 573

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           ++ +R F+VRDA+RFH F++G CSC+DYW
Sbjct: 574 ELTNRAFLVRDASRFHRFENGACSCRDYW 602



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 131/249 (52%), Gaps = 9/249 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQ---GVEINSVTMLCLLPIC 57
           VF+E  +++   V +NA+IS +  N L  EAV L+ +MR     GVE ++VT++ +L  C
Sbjct: 178 VFEEMPRASRDLVSWNAVISAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSC 237

Query: 58  VDPGYLWLGMCCHCICVKF--GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT 115
              G   +G+           G   +  + N L+  + +CGS+   ++LFD++PE+ +++
Sbjct: 238 AHTGARRVGLDVERYVRDTIPGFRDNLPLCNALINFHARCGSLAQAQELFDEMPERSVVS 297

Query: 116 WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175
           W  +I GY  +G     ++L+  M S    PD+V  VG+LS+C+H G +  G +    ++
Sbjct: 298 WTTLIIGYGMHGQGDIAVDLFETMVSEATAPDSVAMVGLLSACSHAGMYDEGRKYFSTME 357

Query: 176 ANGFGSNPFLNN--ALINMYARCGNLKKARAIFDGMPRKTV-VSWTAIIGGYGIHGHGEV 232
            + +   P L +   ++++  R G L +AR +   MP       W A++G   IH + E+
Sbjct: 358 RD-YCLRPKLEHYTCMVDLLGRAGRLDEARELIASMPMAADGAVWGALLGACKIHKNVEM 416

Query: 233 AVQLFDEML 241
             + F+ ++
Sbjct: 417 GEEAFERVV 425


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 243/516 (47%), Positives = 332/516 (64%), Gaps = 7/516 (1%)

Query: 6   IKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWL 65
           I+   L  C NA+ISG+  N    ++V LF ++   G  ++S T++ L+P+    G+ +L
Sbjct: 92  IRKKDLISC-NAMISGFTCNGETEDSVRLFKELLSSGERVSSSTIVGLIPVYSPFGHSYL 150

Query: 66  GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
             C H  CVK G+    SV   L T+Y +   + + R+LFD+  EK L +WNAMISG  Q
Sbjct: 151 CNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQ 210

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
           NGL    + L++ M+   V P+ VT   +LS+CA +GA S+G  V   I++N F SN ++
Sbjct: 211 NGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYV 270

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
           + ALI+MYA+CG++  AR +FD MP K  V+W A+I GYG+HGHG+ A++LF +ML S +
Sbjct: 271 STALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSV 330

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
           +P G  F+SVL ACSHAGL  +G   F+ M + +G +P  EHY CMVD+LGRAGQL +AL
Sbjct: 331 KPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKAL 390

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR 365
           E I++M VEP   VWGALLGAC IHK+  LA +A  K+ +L+P N GYYVL+SNIYS  R
Sbjct: 391 EFIKAMPVEPGPPVWGALLGACMIHKDTNLAHVASEKLFELDPENIGYYVLMSNIYSVER 450

Query: 366 NLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL----- 420
                  VR + +++RL K PG + +E+    H+F  GD++H Q+  IY  LDKL     
Sbjct: 451 KYPQAASVRQVAKKKRLAKTPGCTLIEIGQVPHVFTSGDQSHPQSKAIYAELDKLTGKMT 510

Query: 421 ENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCH 480
           E   Q    T   D +  E+ L   +VHSEKLAIAFG+I+T PG EI ++KNLR+C DCH
Sbjct: 511 EAGFQTETTTVLHDLEEEEKELT-MKVHSEKLAIAFGLISTEPGAEIRIIKNLRVCLDCH 569

Query: 481 LFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            + K +SKI  R  +VRDA RFHHFK G CSC DYW
Sbjct: 570 NWTKFLSKITKRVIVVRDANRFHHFKDGLCSCGDYW 605



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 169/346 (48%), Gaps = 4/346 (1%)

Query: 18  LISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKF 76
           +ISG+V NS   +++ +FG M    G   +  T++ +LP   +   L LGM   C+ +K 
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 77  GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY 136
           G     S+   L++++ KCG V+  R LF ++ +K LI+ NAMISG+  NG     + L+
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120

Query: 137 REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196
           +E+ S G    + T VG++   +  G   +   +       G  S+  ++ AL  +Y R 
Sbjct: 121 KELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRL 180

Query: 197 GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL 256
             +  AR +FD    KT+ SW A+I G   +G  + A+ LF  M K+ + P+     S+L
Sbjct: 181 NEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSIL 240

Query: 257 SACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPD 316
           SAC+  G    G E+ + +      +      T ++D+  + G +  A EL + ++ E +
Sbjct: 241 SACAQIGALSLG-EWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFD-LMPEKN 298

Query: 317 GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362
              W A++    +H + + A   F  ++      TG    LS +Y+
Sbjct: 299 EVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTG-LTFLSVLYA 343


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 239/513 (46%), Positives = 322/513 (62%), Gaps = 17/513 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V YNA+I GY  N     ++SLF ++   G  + S T++ L+P+    G+L L    H  
Sbjct: 288 VAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVS---GHLMLIYAIHGY 344

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
           C+K       SV   L T+Y K   ++  RKLFD+ PEK L +WNAMISGY QNGL    
Sbjct: 345 CLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDA 404

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + L+REM+     P+ VT   +LS+CA LGA S+G  V   +++  F S+ +++ ALI M
Sbjct: 405 ISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGM 464

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG++ +AR +FD M +K  V+W  +I GYG+HG G+ A+ +F EML SGI P    F
Sbjct: 465 YAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTF 524

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + VL ACSHAGL  +G E F  M ++YG +P  +HY CMVD+LGRAG L  AL+ IE+M 
Sbjct: 525 LCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMS 584

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           +EP  +VW  LLGAC+IHK+  LA     K+ +L+P N GY+VLLSNI+S  RN      
Sbjct: 585 IEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAAT 644

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR   ++R+L K PGY+ +E+    H+F  GD++H Q  EIY  L+KLE  ++E      
Sbjct: 645 VRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMRE-----A 699

Query: 433 SDQKNSEEHLNDTE---------VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFI 483
             Q  +E  L+D E         VHSE+LAIAFG+I T PGTEI ++KNLR+C DCH   
Sbjct: 700 GYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVT 759

Query: 484 KLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KL+SKI +R  +VRDA RFHHFK G CSC DYW
Sbjct: 760 KLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 154/324 (47%), Gaps = 14/324 (4%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
           T+ +N +ISGY  N +  E++ +F  +  E    +++ T+L +LP   +   L LGM  H
Sbjct: 185 TILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIH 244

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
            +  K G      V    +++Y KCG +  G  LF +  +  ++ +NAMI GY  NG   
Sbjct: 245 SLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETE 304

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHL----GAHSVGLEVEQQIQANGFGSNPFLN 186
             L L++E+   G    + T V ++    HL      H   L+       + F S+  ++
Sbjct: 305 LSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLK-------SNFLSHASVS 357

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
            AL  +Y++   ++ AR +FD  P K++ SW A+I GY  +G  E A+ LF EM KS   
Sbjct: 358 TALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFS 417

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           P+      +LSAC+  G    G ++ + +      +      T ++ +  + G + EA  
Sbjct: 418 PNPVTITCILSACAQLGALSLG-KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARR 476

Query: 307 LIESMLVEPDGAVWGALLGACKIH 330
           L + ++ + +   W  ++    +H
Sbjct: 477 LFD-LMTKKNEVTWNTMISGYGLH 499



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 130/251 (51%), Gaps = 6/251 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGYL--WLGMCCHC 71
           +N L+ G+ +N     ++S+F  +R+   ++ NS T      I    G+     G   H 
Sbjct: 86  FNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYA--FAISAASGFRDDRAGRVIHG 143

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             V  G D +  +G+ ++ MY K   V+  RK+FD++PEK  I WN MISGY +N +   
Sbjct: 144 QAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVE 203

Query: 132 VLELYREMKSLGVCP-DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
            ++++R++ +      D  T + +L + A L    +G+++       G  S+ ++    I
Sbjct: 204 SIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFI 263

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           ++Y++CG +K   A+F    +  +V++ A+I GY  +G  E+++ LF E++ SG R   +
Sbjct: 264 SLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSS 323

Query: 251 AFVSVLSACSH 261
             VS++    H
Sbjct: 324 TLVSLVPVSGH 334


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/509 (45%), Positives = 323/509 (63%), Gaps = 6/509 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + YNA+ISG+  N     +V LF ++   G  ++S T++ L+P+    G+L L    H  
Sbjct: 276 IAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGF 335

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
           CVK G+ L+ +V      +Y K   +D  R LFD+ PEK ++ WNAMISGY QNG     
Sbjct: 336 CVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETA 395

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + L++EM      P+AVT   +LS+CA LG+ S G  V   I++     N +++ AL++M
Sbjct: 396 ISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDM 455

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CGN+ +A  +FD M  K  V+W  +I GYG+HG+G  A++L++EML  G  P    F
Sbjct: 456 YAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTF 515

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +SVL ACSHAGL  +G E F+ M NKY ++P  EHY CMVD+LGR+GQL +ALE I+ M 
Sbjct: 516 LSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMP 575

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           VEP  AVWG LLGAC IHK+ ++A LA  ++ +L+P + GYYVLLSNIYS  RN      
Sbjct: 576 VEPGPAVWGTLLGACMIHKDTDIARLASERLFELDPGSVGYYVLLSNIYSVERNFPKAAS 635

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           +R ++++R+L K PG + +E+ G  H+F+ GDR+H    +IY  L+KL   ++E      
Sbjct: 636 IRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGDRSHSHATDIYAKLEKLTGKMREMGYQAE 695

Query: 433 S-----DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           +     D +  E+ L    VHSEKLAIAFG+I T PG EI ++KNLR+C DCH   K +S
Sbjct: 696 TVPALHDVEEEEKEL-AVNVHSEKLAIAFGLITTEPGNEIRIIKNLRVCLDCHTATKFIS 754

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KI +R  +VRDA RFHHFK G CSC DYW
Sbjct: 755 KITERVIVVRDANRFHHFKDGICSCGDYW 783



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 164/319 (51%), Gaps = 2/319 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           TV +N +I+G V N    +++ LF +M   GV ++S T+  +LP   +   L +GM   C
Sbjct: 174 TVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQC 233

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + +K G      V   L+++Y KCG V+  R LF ++    LI +NAMISG+  NG    
Sbjct: 234 LALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTEC 293

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            ++L+RE+   G    + T VG++   +  G   +   +      +G   NP ++ A   
Sbjct: 294 SVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTA 353

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +Y +   +  AR +FD  P KTVV+W A+I GY  +G  E A+ LF EM+K+   P+   
Sbjct: 354 IYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVT 413

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
             ++LSAC+  G    G ++ + +     L+P     T +VD+  + G ++EA +L +SM
Sbjct: 414 ITTILSACAQLGSLSFG-KWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSM 472

Query: 312 LVEPDGAVWGALLGACKIH 330
             E +   W  ++    +H
Sbjct: 473 -SEKNTVTWNTMIFGYGLH 490



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/406 (26%), Positives = 188/406 (46%), Gaps = 48/406 (11%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +N L+ G+ LN   S ++SL+  +R    +  ++ T    +  C +  +L L +  H I 
Sbjct: 78  FNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLML-LHAHSII 136

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
             +G ++   VG+ L+ +Y K   V Y RK+FD +PE+  + WN MI+G  +N      +
Sbjct: 137 DGYGSNV--FVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSI 194

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
           +L+REM + GV  D+ T   VL + A L    VG+ ++      GFG   ++   LI++Y
Sbjct: 195 QLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLY 254

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
           ++CG++  AR +F  + R  ++++ A+I G+  +G  E +V+LF E+L SG R   +  V
Sbjct: 255 SKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIV 314

Query: 254 SVLS----------ACSHAGLTDKG--------LEYFYGMKNKYG--------LQPGPEH 287
            ++           ACS  G   K            F  + NK              PE 
Sbjct: 315 GLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEK 374

Query: 288 ----YTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGACKIHKNVELAELAF 340
               +  M+    + G    A+ L + M+     P+      +L AC      +L  L+F
Sbjct: 375 TVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSAC-----AQLGSLSF 429

Query: 341 GK----VIKLEPMNTGYYV--LLSNIYSEARNLDGIMRVRMMMRER 380
           GK    +IK E +    YV   L ++Y++  N+    ++   M E+
Sbjct: 430 GKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEK 475



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 118/256 (46%), Gaps = 18/256 (7%)

Query: 77  GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY 136
           G   D +    L        +  + R LF  VP+  +  +N ++ G++ N   +  + LY
Sbjct: 39  GYRFDLATLTKLTQKLFDFSATRHARALFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLY 98

Query: 137 REM-KSLGVCPDAVTFVGVLSSCAH------LGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
             + ++  + PD  T+   +++C++      L AHS+          +G+GSN F+ +AL
Sbjct: 99  THLRRNTNLSPDNFTYAFAVAACSNDKHLMLLHAHSI---------IDGYGSNVFVGSAL 149

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           +++Y +   +  AR +FDGMP +  V W  +I G   +   + ++QLF EM+  G+R D 
Sbjct: 150 VDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDS 209

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
           +   +VL A +       G+     +  K G        T ++ L  + G +N A  L+ 
Sbjct: 210 STVTAVLPAAAELQELKVGMG-IQCLALKIGFGFCDYVLTGLISLYSKCGDVNTA-RLLF 267

Query: 310 SMLVEPDGAVWGALLG 325
             +  PD   + A++ 
Sbjct: 268 RRINRPDLIAYNAMIS 283


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 242/530 (45%), Positives = 341/530 (64%), Gaps = 16/530 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLF---------GKMREQGVEINSVTML 51
           +FDE  +     V + +LI+GYV N    EA+ +F         G   E G  ++SV M+
Sbjct: 139 LFDEIPRRN--IVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMI 196

Query: 52  CLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK 111
            +L  C       +    H + +K GLD    V N L+  Y KCG V   RK+FD + EK
Sbjct: 197 SVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEK 256

Query: 112 GLITWNAMISGYAQNGLATHVLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEV 170
            +++WN+MI+ YAQNGL+T   E++  M K+ G   + VT   +L +CAH GA  VG+ +
Sbjct: 257 DVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCL 316

Query: 171 EQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHG 230
             Q+   G+ +N  +  ++I+MY +CG  + AR  FDGM  K V SWTA+I GYG+HG  
Sbjct: 317 HDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFA 376

Query: 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC 290
             A+ +F +M+ +G++P+   F+SVL+ACSHAG  ++G  +F  M ++Y ++PG EHY C
Sbjct: 377 REALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGC 436

Query: 291 MVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN 350
           MVDLLGRAG + EA  LI+SM V  D  +WG+LL AC+IHK+VELAE++  ++ KL+P N
Sbjct: 437 MVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSN 496

Query: 351 TGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQT 410
            GYYVLL+NIY++A     + R+R+++++R L K PGYS VELKGRVH+F+VGD+ H Q 
Sbjct: 497 CGYYVLLANIYADAGRWKDVERMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKEHPQH 556

Query: 411 VEIYRMLDKLENLVQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTE 466
            +IY+ L++L   +QE     +        + EE      VHSEKLA+AFG++N+ PG+ 
Sbjct: 557 EKIYKYLEELSVKLQEAGYVPNMASVLHDVDEEEKEMIVRVHSEKLAVAFGVMNSIPGST 616

Query: 467 IVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           I V+KNLR+CGDCH  IKL+SKIV R+ IVRDA RFHHFK G CSC DYW
Sbjct: 617 IHVIKNLRVCGDCHTVIKLISKIVSREIIVRDAKRFHHFKDGLCSCGDYW 666



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 160/345 (46%), Gaps = 24/345 (6%)

Query: 8   STHLTVCYNALISG---YVLNSLVSE---------AVSLFGKMREQGVEINSVTMLCLLP 55
           +T+LT  +N        Y  NSL++E         ++  F  MR+  ++ N  T  C + 
Sbjct: 31  NTNLTTLFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIK 90

Query: 56  ICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT 115
            C     L  G   H   + FG + D  V + L+ MY KCG +   R LFD++P + ++T
Sbjct: 91  SCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVT 150

Query: 116 WNAMISGYAQNGLATHVLELYREM---------KSLGVCPDAVTFVGVLSSCAHLGAHSV 166
           W ++I+GY QN  A   L +++E          + +G   D+V  + VLS+C+ +   +V
Sbjct: 151 WTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAV 210

Query: 167 GLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGI 226
              V       G      + N L++ YA+CG +  +R +FD M  K VVSW ++I  Y  
Sbjct: 211 SEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQ 270

Query: 227 HGHGEVAVQLFDEMLKS-GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
           +G    A ++F  MLK+ G + +     ++L AC+H G    G+   +    K G     
Sbjct: 271 NGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGM-CLHDQVIKMGYVNNV 329

Query: 286 EHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
              T ++D+  + GQ   A    + M  E +   W A++    +H
Sbjct: 330 IMATSIIDMYCKCGQAEMARNAFDGM-KEKNVRSWTAMIAGYGMH 373


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/513 (46%), Positives = 324/513 (63%), Gaps = 17/513 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V YNA+I GY  N     ++SLF ++   G ++ S T++ L+P+    G+L L    H  
Sbjct: 288 VAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVS---GHLMLIYAIHGY 344

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K       SV   L T+Y K   ++  RKLFD+ PEK L +WNAMISGY QNGL    
Sbjct: 345 SLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDA 404

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + L+REM++    P+ VT   +LS+CA LGA S+G  V   +++  F S+ +++ ALI M
Sbjct: 405 ISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGM 464

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG++ +AR +FD MP+K  V+W  +I GYG+HGHG+ A+ +F EML SGI P    F
Sbjct: 465 YAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTF 524

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + VL ACSHAGL  +G E F  M ++YG +P  +HY C+VD+LGRAG L  AL+ IE+M 
Sbjct: 525 LCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMP 584

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           ++P  +VW  LLGAC+IHK+  LA     K+ +L+P N GY+VLLSNI+S  RN      
Sbjct: 585 IQPGPSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAAT 644

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR   ++R+L K PGY+ +E+    H+F  GD++H Q   I+  L+KLE  ++E      
Sbjct: 645 VRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKAIHEKLEKLEGKMRE-----A 699

Query: 433 SDQKNSEEHLNDTE---------VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFI 483
             Q  +E  L+D E         VHSE+LAIAFG+I T PGTEI ++KNLR+C DCH   
Sbjct: 700 GYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTAT 759

Query: 484 KLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KL+SKI +R  +VRDA RFHHFK G CSC DYW
Sbjct: 760 KLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 157/338 (46%), Gaps = 14/338 (4%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
           T+ +N +ISGY  N +  E++ +F  +  E    +++ T+L +LP   +   L LGM  H
Sbjct: 185 TILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIH 244

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
            +  K G      V    +++Y KCG +     LF +     ++ +NAMI GY  NG   
Sbjct: 245 SLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETE 304

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHL----GAHSVGLEVEQQIQANGFGSNPFLN 186
             L L++E+   G    + T V ++    HL      H   L+       + F S+  ++
Sbjct: 305 LSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLIYAIHGYSLK-------SNFLSHTSVS 357

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
            AL  +Y++   ++ AR +FD  P K++ SW A+I GY  +G  E A+ LF EM  S   
Sbjct: 358 TALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFS 417

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           P+      +LSAC+  G    G ++ + +      +      T ++ +  + G + EA  
Sbjct: 418 PNPVTITCILSACAQLGALSLG-KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARR 476

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI 344
           L + M  + +   W  ++    +H + + A   F +++
Sbjct: 477 LFDFM-PKKNEVTWNTMISGYGLHGHGQEALTIFSEML 513



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 130/251 (51%), Gaps = 6/251 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGYL--WLGMCCHC 71
           +N L+ G+ +N     ++++F  +R+   ++ NS T      I    G+     G   H 
Sbjct: 86  FNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYA--FAISAASGFRDDRAGCVIHG 143

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +  G D +  +G+ ++ MY K   V+  RK+FD++PEK  I WN MISGY +N +   
Sbjct: 144 QAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVE 203

Query: 132 VLELYREMKSLGVCP-DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
            ++++R++ +      D  T + +L + A L    +G+++       G  S+ ++    I
Sbjct: 204 SIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFI 263

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           ++Y++CG +K A  +F    R  +V++ A+I GY  +G  E+++ LF E++ SG +   +
Sbjct: 264 SLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSS 323

Query: 251 AFVSVLSACSH 261
             VS++    H
Sbjct: 324 TLVSLVPVSGH 334


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 239/511 (46%), Positives = 325/511 (63%), Gaps = 9/511 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V YNALISGY +N +V  +V LF ++   G+  +S T++ L+P+    G+  L  C H  
Sbjct: 288 VTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAH 347

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK GLD +  V   L T+Y +   +D  R+ FD +PEK + +WNAMISGYAQNGL    
Sbjct: 348 VVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMA 407

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + L+++M++L V P+ +T    LS+CA LGA S+G  V + I       N ++  ALI+M
Sbjct: 408 VALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANEKLELNVYVMTALIDM 467

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CG++ +AR IFD M  K VVSW  +I GYG+HG G  A++L+ +M+ + + P  + F
Sbjct: 468 YVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPTSSTF 527

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +SVL ACSH GL  +G   F  M + YG+ PG EH TCMVDLLGRAGQL EA ELI    
Sbjct: 528 LSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRAGQLKEAFELISEFP 587

Query: 313 VEPDGA-VWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
               G  +WGALLGAC +HK+ +LA+LA  K+ +LEP NTGYYVLLSN+Y+  +      
Sbjct: 588 KSAVGPGIWGALLGACMVHKDGDLAKLASQKLFELEPENTGYYVLLSNLYTSKKQYSEAA 647

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
            VR   + R+L K PG + +E+  R H+FM GDR H Q+  IY  L+KL   + E     
Sbjct: 648 VVRQEAKSRKLVKTPGCTLIEIGDRPHVFMAGDRAHPQSDAIYLYLEKLTAKMIE--AGY 705

Query: 432 RSDQKNS------EEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
           R D + +      EE  +  +VHSEKLAIAFG++NT PGTEI ++KNLR+C DCH   K+
Sbjct: 706 RPDTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLNTEPGTEIRIIKNLRVCLDCHNATKI 765

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +SK+  R  +VRDA+RFHHF+ G CSC DYW
Sbjct: 766 ISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 796



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 155/301 (51%), Gaps = 6/301 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMCCH 70
           TV +N L++G       SEA+  F +M   G V  +S T+  +LP   +     +G C H
Sbjct: 189 TVLWNTLLAGLS----GSEALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVH 244

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
               K GL     V   L+++Y KCG ++  R LFD++    L+T+NA+ISGY+ NG+  
Sbjct: 245 AFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVG 304

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             +EL++E+  +G+ P + T V ++   +  G   +   +   +   G  +N  ++ AL 
Sbjct: 305 SSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALT 364

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
            +Y R  ++  AR  FD MP KT+ SW A+I GY  +G  E+AV LF +M    +RP+  
Sbjct: 365 TLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPL 424

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
              S LSAC+  G    G ++ + +     L+      T ++D+  + G + EA  + +S
Sbjct: 425 TISSALSACAQLGALSLG-KWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDS 483

Query: 311 M 311
           M
Sbjct: 484 M 484



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 153/373 (41%), Gaps = 60/373 (16%)

Query: 26  SLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVG 85
           S    A SL       G+   S     L P+             H + V  G   D  V 
Sbjct: 115 SFAFAATSLASSCSRGGISPPSAASAALRPL-------------HALAVASGFAADNFVA 161

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG-V 144
           + L  +Y      +  RK+FD VP    + WN +++G +     +  LE +  M   G V
Sbjct: 162 SALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLS----GSEALEAFVRMAGAGSV 217

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARA 204
            PD+ T   VL + A +   ++G  V    +  G   +  +   LI++YA+CG+++ AR 
Sbjct: 218 RPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARH 277

Query: 205 IFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSV--------- 255
           +FD M    +V++ A+I GY I+G    +V+LF E++  G+RP  +  V++         
Sbjct: 278 LFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGH 337

Query: 256 --LSACSHAGLTDKGLE--------------YFYGM---KNKYGLQPGP--EHYTCMVDL 294
             L+ C HA +   GL+               F  M   +  +   P    E +  M+  
Sbjct: 338 EPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISG 397

Query: 295 LGRAGQLNEALELIESML---VEPDGAVWGALLGACKIHKNVELAELAFG----KVIKLE 347
             + G    A+ L + M    V P+     + L AC      +L  L+ G    K+I  E
Sbjct: 398 YAQNGLTEMAVALFQQMQALNVRPNPLTISSALSAC-----AQLGALSLGKWVHKIIANE 452

Query: 348 PMNTGYYVLLSNI 360
            +    YV+ + I
Sbjct: 453 KLELNVYVMTALI 465


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 247/532 (46%), Positives = 342/532 (64%), Gaps = 18/532 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLF-----------GKMREQGVEINSVT 49
           +FDE  +     V + ++ISGYV N    EAV LF            ++   GV ++SV 
Sbjct: 143 LFDEIPERN--VVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVL 200

Query: 50  MLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP 109
           + C++  C       +  C H + VK G +   +VGN LM  Y KCG +   RK+FD + 
Sbjct: 201 LGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGME 260

Query: 110 EKGLITWNAMISGYAQNGLATHVLELYREMKSLG-VCPDAVTFVGVLSSCAHLGAHSVGL 168
           E  + +WN++I+ YAQNGL+     L+ +M   G V  +AVT   VL +CAH GA  +G 
Sbjct: 261 ETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGK 320

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
            +  Q+       N  +  ++++MY +CG ++ AR  FD + RK V SWT ++ GYG+HG
Sbjct: 321 CIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHG 380

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY 288
           HG+ A+++F EM++ GI+P+   FVSVL+ACSHAGL  +G  +F  MK ++ ++PG EHY
Sbjct: 381 HGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHY 440

Query: 289 TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEP 348
           +CMVDLLGRAG L EA  LI+ M V+PD  VWG+LLGAC+IHKNVEL E++  K+ KL+P
Sbjct: 441 SCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDP 500

Query: 349 MNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHH 408
            N GYYVLLSNIY++A   D + R+R++M+   L K PGYS VE KGRVH+F+VGD+ H 
Sbjct: 501 SNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEHP 560

Query: 409 QTVEIYRMLDKLENLVQE----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPG 464
           Q  +IY  LD+L   +QE     + T      + EE      VHSEKLA+AFGI+N+ PG
Sbjct: 561 QHEKIYEYLDELNVKLQEVGYMPNVTSVLYDVDVEEKGMVLRVHSEKLAVAFGIMNSVPG 620

Query: 465 TEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           + I ++KNLRICGDCH  IKL+SKIV+R+ ++RD+ RFHHFK G CSC DYW
Sbjct: 621 SVIQIIKNLRICGDCHFAIKLISKIVNREIVIRDSKRFHHFKDGLCSCGDYW 672



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 165/343 (48%), Gaps = 14/343 (4%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N++I+ +  +    +A+  F  MR+  +  N  T  C +  C     L  G   H    
Sbjct: 54  WNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIHQQAF 113

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
            FG   D  V + L+ MY KCG ++  RKLFD++PE+ +++W +MISGY QN  A   + 
Sbjct: 114 VFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVF 173

Query: 135 LYR-----------EMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP 183
           L++           E+  +GV  D+V    V+S+CA +   SV   V       GF    
Sbjct: 174 LFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCL 233

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
            + N L++ YA+CG +  +R +FDGM    V SW ++I  Y  +G    A  LF +M+K 
Sbjct: 234 AVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKR 293

Query: 244 G-IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
           G +R +     +VL AC+H+G    G +  +    K  L+      T +VD+  + G++ 
Sbjct: 294 GEVRYNAVTLSAVLLACAHSGALQIG-KCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVE 352

Query: 303 EALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345
            A +  +  L   +   W  ++    +H + + A   F ++I+
Sbjct: 353 MARKAFDR-LKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIR 394



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 122/236 (51%), Gaps = 14/236 (5%)

Query: 102 RKLFDQ-VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160
           R +F + V +  + +WN++I+ +A++G +   L  +  M+ L + P+  TF   + SC+ 
Sbjct: 39  RSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSS 98

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           L     G ++ QQ    G+GS+ F+ +ALI+MY++CG L  AR +FD +P + VVSWT++
Sbjct: 99  LYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSM 158

Query: 221 IGGYGIHGHGEVAVQLF-----------DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
           I GY  +     AV LF           DE++  G+  D      V+SAC+   +     
Sbjct: 159 ISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSV-T 217

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           E  +G+  K G +        ++D   + G+++ + ++ + M  E D   W +L+ 
Sbjct: 218 ECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGM-EETDVCSWNSLIA 272


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 239/529 (45%), Positives = 342/529 (64%), Gaps = 15/529 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGK--MREQGVE------INSVTMLC 52
           +FDE   S    V + ++I+GYV N     A+ LF +  + E G E      ++ + M+ 
Sbjct: 209 LFDEI--SHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVS 266

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           +L  C       +    H   +K G + D  V N LM  Y KCG +   R++FD + E+ 
Sbjct: 267 VLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERD 326

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLG-VCPDAVTFVGVLSSCAHLGAHSVGLEVE 171
           +I+WN++I+ YAQNG++T  +E++  M   G +  +AVT   VL +CAH G+  +G  + 
Sbjct: 327 VISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIH 386

Query: 172 QQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGE 231
            Q+   G  SN F+  ++I+MY +CG ++ AR  FD M  K V SW+A++ GYG+HGH +
Sbjct: 387 DQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAK 446

Query: 232 VAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCM 291
            A+++F EM  +G++P+   FVSVL+ACSHAGL ++G  +F  M +++ ++PG EHY CM
Sbjct: 447 EALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCM 506

Query: 292 VDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351
           VDLLGRAG L EA +LI+ M + PD  VWGALLGAC++HKNV+L E++  K+ +L+P N 
Sbjct: 507 VDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNC 566

Query: 352 GYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTV 411
           GYYVLLSNIY++A   + + R+R++M+   L K PG+S V++KGRVH+F+VGDR H Q  
Sbjct: 567 GYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHE 626

Query: 412 EIYRMLDKLENLVQE----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEI 467
           +IY  L+KL   +QE     D T        EE      VHSEKLA+AFGI+NT PGT I
Sbjct: 627 KIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTTI 686

Query: 468 VVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            ++KNLR+CGDCH  IK +SKIVDR+ +VRD+ RFHHF+ G CSC DYW
Sbjct: 687 HIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 735



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 174/349 (49%), Gaps = 12/349 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +F++ +  T++   +N++I+    +    EA+  F  MR+  ++ N  T  C +  C   
Sbjct: 107 LFNKYVDKTNV-FSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSAL 165

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H   + FG + D  V + L+ MY KCG +   R LFD++  + +++W +MI
Sbjct: 166 LDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMI 225

Query: 121 SGYAQNGLATHVLELYREM-----KSLG---VCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
           +GY QN  A   L L++E       S G   VC D +  V VLS+C+ +   S+   V  
Sbjct: 226 TGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHG 285

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
            +   GF  +  + N L++ YA+CG L  +R +FDGM  + V+SW +II  Y  +G    
Sbjct: 286 FLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTE 345

Query: 233 AVQLFDEMLKSG-IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCM 291
           ++++F  M+K G I  +     +VL AC+H+G    G +  +    K GL+      T +
Sbjct: 346 SMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLG-KCIHDQVIKMGLESNVFVGTSI 404

Query: 292 VDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           +D+  + G++  A +  + M  E +   W A++    +H + + A   F
Sbjct: 405 IDMYCKCGKVEMARKAFDRMR-EKNVKSWSAMVAGYGMHGHAKEALEVF 452


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 239/517 (46%), Positives = 334/517 (64%), Gaps = 13/517 (2%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEI--------NSVTMLCLLPICVDPGYLW 64
            V + ++I+GYV N     A+ LF    E+  E+        +SV M+ +L  C       
Sbjct: 2082 VSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKG 2141

Query: 65   LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYA 124
            +    H   VK G D    VGN LM  Y KCG     +K+FD + EK  I+WN+MI+ YA
Sbjct: 2142 ITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYA 2201

Query: 125  QNGLATHVLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP 183
            Q+GL+   LE++  M + +GV  +AVT   VL +CAH GA   G  +  Q+       N 
Sbjct: 2202 QSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNV 2261

Query: 184  FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
             +  ++I+MY +CG ++ A+  FD M  K V SWTA++ GYG+HG  + A+ +F +M+++
Sbjct: 2262 CVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRA 2321

Query: 244  GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
            G++P+   FVSVL+ACSHAGL ++G  +F  MK+KY ++PG EHY CMVDL GRAG LNE
Sbjct: 2322 GVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNE 2381

Query: 304  ALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE 363
            A  LI+ M ++PD  VWG+LLGAC+IHKNV+L E+A  K+ +L+P N GYYVLLSN+Y++
Sbjct: 2382 AYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYAD 2441

Query: 364  ARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENL 423
            A     + R+RM+M+ R+L K PG+S VELKGRVH+F+VGD+ H     IY+ L+KL   
Sbjct: 2442 AGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLE 2501

Query: 424  VQE----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDC 479
            +Q+     + T      + EE      VHSEKLA+AFG++N++PGT I ++KNLR+CGDC
Sbjct: 2502 LQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDC 2561

Query: 480  HLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            H  IKL+SK+V R F+VRD+ RFHHFK G CSC DYW
Sbjct: 2562 HTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 2598



 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 100/326 (30%), Positives = 164/326 (50%), Gaps = 31/326 (9%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T  +N +I    +N L  +A+ L+  M  QG+  +  T   ++  C +   + LG   H 
Sbjct: 90  TFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHG 149

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYG------------------------------ 101
             +K+G   D  V N L+  Y KCG   +                               
Sbjct: 150 SLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQE 209

Query: 102 -RKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160
            R++FD++P K +++W AMI+GY +N      LEL++ M++  + P+  T V ++ +C  
Sbjct: 210 ARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTE 269

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           +G  ++G  +      N      +L  ALI+MY++CG++K A  +F+ MPRK++ +W ++
Sbjct: 270 MGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSM 329

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           I   G+HG G+ A+ LF EM +  ++PD   F+ VL AC H     +G  YF  M   YG
Sbjct: 330 ITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYG 389

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALE 306
           + P PEHY CM +L  R+  L+EA +
Sbjct: 390 IAPIPEHYECMTELYARSNNLDEAFK 415



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 164/343 (47%), Gaps = 17/343 (4%)

Query: 15   YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
            +N++I+         EA+  F  +R+ G+     +  C +  C     L  G   H    
Sbjct: 1983 WNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAF 2042

Query: 75   KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             FG + D  V + L+ MY KCG +   R LFD++P + +++W +MI+GY QN  A + L 
Sbjct: 2043 VFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALL 2102

Query: 135  LYR-------EMKSLGVCP-DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
            L++       E++     P D+V  V VLS+C+ +    +   V   +   GF  +  + 
Sbjct: 2103 LFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVG 2162

Query: 187  NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS-GI 245
            N L++ YA+CG    ++ +FD M  K  +SW ++I  Y   G    A+++F  M++  G+
Sbjct: 2163 NTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGV 2222

Query: 246  RPDGTAFVSVLSACSHAGLTDKGL---EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
            R +     +VL AC+HAG    G    +    M  +Y +  G    T ++D+  + G++ 
Sbjct: 2223 RYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVG----TSIIDMYCKCGRVE 2278

Query: 303  EALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345
             A +  + M  E +   W A++    +H   + A   F K+++
Sbjct: 2279 MAKKTFDRM-KEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVR 2320



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 131/295 (44%), Gaps = 39/295 (13%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   ++ GL  D  +   L+ +Y   G + Y   LF Q+      TWN +I     NGL+
Sbjct: 47  HAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLS 106

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              L LY+ M   G+  D  TF  V+ +C +  +  +G  V   +   GF  + F+ N L
Sbjct: 107 EQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNL 166

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWT------------------------------- 218
           I+ Y +CG+ + A  +F+ M  + VVSWT                               
Sbjct: 167 IDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWT 226

Query: 219 AIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKN 277
           A+I GY  +   E A++LF  M    I P+    VS++ AC+  G+   G   + Y +KN
Sbjct: 227 AMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKN 286

Query: 278 --KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
             + G+  G    T ++D+  + G + +A+E+ E+M        W +++ +  +H
Sbjct: 287 CIEIGVYLG----TALIDMYSKCGSIKDAIEVFETM-PRKSLPTWNSMITSLGVH 336



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 119/231 (51%), Gaps = 12/231 (5%)

Query: 104  LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163
             +  V +  + +WN++I+  A+ G +   L  +  ++ LG+ P   +F   + SC+ L  
Sbjct: 1971 FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCD 2030

Query: 164  HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGG 223
               G    QQ    GF ++ F+++ALI+MY++CG LK ARA+FD +P + VVSWT++I G
Sbjct: 2031 LVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITG 2090

Query: 224  YGIHGHGEVAVQLFDEMLK--------SGIRPDGTAFVSVLSACSHAGLTDKGL-EYFYG 274
            Y  +   + A+ LF + L+        + +  D    VSVLSACS   ++ KG+ E  +G
Sbjct: 2091 YVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSR--VSGKGITEGVHG 2148

Query: 275  MKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
               K G          ++D   + GQ   + ++ + M  E D   W +++ 
Sbjct: 2149 FVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWM-EEKDDISWNSMIA 2198



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 1/145 (0%)

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
           ++  +I  +G  ++  L   LI++Y+  G +  A  +F  +      +W  II    I+G
Sbjct: 45  QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTING 104

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY 288
             E A+ L+  M+  GI  D   F  V+ AC++    D G +  +G   KYG        
Sbjct: 105 LSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLG-KVVHGSLIKYGFSGDVFVQ 163

Query: 289 TCMVDLLGRAGQLNEALELIESMLV 313
             ++D   + G    AL++ E M V
Sbjct: 164 NNLIDFYFKCGHTRFALKVFEKMRV 188


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 237/511 (46%), Positives = 326/511 (63%), Gaps = 9/511 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V YNALISGY +N +V  +V LF ++   G   NS T++ ++P+    G+  L  C H  
Sbjct: 279 VAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAF 338

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK  LD D  V   L T+Y +   ++  R +FD + EK + +WNAMISGYAQNGL    
Sbjct: 339 VVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMA 398

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + L++ M+ L V P+ +T    LS+CAHLGA S+G  V + I       N ++  ALI+M
Sbjct: 399 VALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDM 458

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG++ +AR+IFD M  K VVSW A+I GYG+HG G  A++L+ +ML + I P  + F
Sbjct: 459 YAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARILPTSSTF 518

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +SV+ ACSH GL D+G + F  M N+Y + PG EH TCMVDLLGRAG+LNEALELI    
Sbjct: 519 LSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNEALELISEFP 578

Query: 313 VEPDGA-VWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
               G  VWGALLGAC +HKN +LA+LA  K+ +L+  N GYYVLLSN+Y+  ++     
Sbjct: 579 QSAIGPGVWGALLGACMVHKNSDLAKLASQKLFELDSENAGYYVLLSNLYTSKKHYSEAA 638

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
            VR   + R+L K PG + +E+  R H+FM GD  H Q+  IY  L++L   + E     
Sbjct: 639 VVRQEAKTRKLVKTPGCTLIEIGDRPHVFMAGDHLHPQSEAIYSYLERLTAKMIEAGYQP 698

Query: 432 RSD------QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
            ++      ++  +EH+   +VHSEKLAIAFG+++T PGTEI ++KNLR+C DCH   K 
Sbjct: 699 VTEAALYDVEEEEKEHM--VKVHSEKLAIAFGLLSTEPGTEIRIIKNLRVCLDCHNATKF 756

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +SK+  R  +VRDA+RFHHF+ G CSC DYW
Sbjct: 757 ISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 166/320 (51%), Gaps = 7/320 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMCCH 70
           T+ +N L++G       SEA+  F +M + G V  +S T+   L    +  ++ +G C H
Sbjct: 180 TILWNTLLAGLP----GSEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVH 235

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
              VK GL     V   LM++Y KCG +D  + LFD++    L+ +NA+ISGY+ NG+  
Sbjct: 236 GYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVE 295

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             +EL++E+ + G  P++ T V V+   +  G   +   +   +      ++  ++ AL 
Sbjct: 296 SSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALT 355

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
            +Y R  +++ AR+IFD M  KT+ SW A+I GY  +G  E+AV LF  M +  ++P+  
Sbjct: 356 TLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPI 415

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
              S LSAC+H G    G ++ + + +K  L+      T ++D+  + G + EA  + + 
Sbjct: 416 TISSTLSACAHLGALSLG-KWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDR 474

Query: 311 MLVEPDGAVWGALLGACKIH 330
           M    +   W A++    +H
Sbjct: 475 M-DNKNVVSWNAMISGYGLH 493



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 139/329 (42%), Gaps = 47/329 (14%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H + V  G   D  V + L  +Y K    D  RK+FD VP    I WN +++G       
Sbjct: 137 HGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLP----G 192

Query: 130 THVLELYREMKSLG-VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
           +  LE +  M   G V PD+ T    L + A     ++G  V       G   +  +   
Sbjct: 193 SEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTG 252

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           L+++Y++CG++  A+ +FD M    +V++ A+I GY ++G  E +V+LF E+  SG RP+
Sbjct: 253 LMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPN 312

Query: 249 GTAFVSV-----------LSACSHA----------GLTDKGLEYFYGMKNKYG------- 280
            +  V+V           L+ C HA           L    L   Y   N          
Sbjct: 313 SSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFD 372

Query: 281 --LQPGPEHYTCMVDLLGRAGQLNEAL---ELIESMLVEPDGAVWGALLGACKIHKNVEL 335
             L+   E +  M+    + G    A+   +L++ + V+P+     + L AC       L
Sbjct: 373 AMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSAC-----AHL 427

Query: 336 AELAFGK----VIKLEPMNTGYYVLLSNI 360
             L+ GK    +I  E +    YV+ + I
Sbjct: 428 GALSLGKWVHRIISKEKLELNVYVMTALI 456


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 239/517 (46%), Positives = 334/517 (64%), Gaps = 13/517 (2%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEI--------NSVTMLCLLPICVDPGYLW 64
            V + ++I+GYV N     A+ LF    E+  E+        +SV M+ +L  C       
Sbjct: 1209 VSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKG 1268

Query: 65   LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYA 124
            +    H   VK G D    VGN LM  Y KCG     +K+FD + EK  I+WN+MI+ YA
Sbjct: 1269 ITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYA 1328

Query: 125  QNGLATHVLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP 183
            Q+GL+   LE++  M + +GV  +AVT   VL +CAH GA   G  +  Q+       N 
Sbjct: 1329 QSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNV 1388

Query: 184  FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
             +  ++I+MY +CG ++ A+  FD M  K V SWTA++ GYG+HG  + A+ +F +M+++
Sbjct: 1389 CVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRA 1448

Query: 244  GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
            G++P+   FVSVL+ACSHAGL ++G  +F  MK+KY ++PG EHY CMVDL GRAG LNE
Sbjct: 1449 GVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNE 1508

Query: 304  ALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE 363
            A  LI+ M ++PD  VWG+LLGAC+IHKNV+L E+A  K+ +L+P N GYYVLLSN+Y++
Sbjct: 1509 AYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYAD 1568

Query: 364  ARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENL 423
            A     + R+RM+M+ R+L K PG+S VELKGRVH+F+VGD+ H     IY+ L+KL   
Sbjct: 1569 AGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLE 1628

Query: 424  VQE----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDC 479
            +Q+     + T      + EE      VHSEKLA+AFG++N++PGT I ++KNLR+CGDC
Sbjct: 1629 LQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDC 1688

Query: 480  HLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            H  IKL+SK+V R F+VRD+ RFHHFK G CSC DYW
Sbjct: 1689 HTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 1725



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 100/326 (30%), Positives = 164/326 (50%), Gaps = 31/326 (9%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T  +N +I    +N L  +A+ L+  M  QG+  +  T   ++  C +   + LG   H 
Sbjct: 90  TFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHG 149

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYG------------------------------ 101
             +K+G   D  V N L+  Y KCG   +                               
Sbjct: 150 SLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQE 209

Query: 102 -RKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160
            R++FD++P K +++W AMI+GY +N      LEL++ M++  + P+  T V ++ +C  
Sbjct: 210 ARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTE 269

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           +G  ++G  +      N      +L  ALI+MY++CG++K A  +F+ MPRK++ +W ++
Sbjct: 270 MGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSM 329

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           I   G+HG G+ A+ LF EM +  ++PD   F+ VL AC H     +G  YF  M   YG
Sbjct: 330 ITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYG 389

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALE 306
           + P PEHY CM +L  R+  L+EA +
Sbjct: 390 IAPIPEHYECMTELYARSNNLDEAFK 415



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 164/343 (47%), Gaps = 17/343 (4%)

Query: 15   YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
            +N++I+         EA+  F  +R+ G+     +  C +  C     L  G   H    
Sbjct: 1110 WNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAF 1169

Query: 75   KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             FG + D  V + L+ MY KCG +   R LFD++P + +++W +MI+GY QN  A + L 
Sbjct: 1170 VFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALL 1229

Query: 135  LYR-------EMKSLGVCP-DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
            L++       E++     P D+V  V VLS+C+ +    +   V   +   GF  +  + 
Sbjct: 1230 LFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVG 1289

Query: 187  NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS-GI 245
            N L++ YA+CG    ++ +FD M  K  +SW ++I  Y   G    A+++F  M++  G+
Sbjct: 1290 NTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGV 1349

Query: 246  RPDGTAFVSVLSACSHAGLTDKGL---EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
            R +     +VL AC+HAG    G    +    M  +Y +  G    T ++D+  + G++ 
Sbjct: 1350 RYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVG----TSIIDMYCKCGRVE 1405

Query: 303  EALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345
             A +  + M  E +   W A++    +H   + A   F K+++
Sbjct: 1406 MAKKTFDRM-KEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVR 1447



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 131/295 (44%), Gaps = 39/295 (13%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   ++ GL  D  +   L+ +Y   G + Y   LF Q+      TWN +I     NGL+
Sbjct: 47  HAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLS 106

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              L LY+ M   G+  D  TF  V+ +C +  +  +G  V   +   GF  + F+ N L
Sbjct: 107 EQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNL 166

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWT------------------------------- 218
           I+ Y +CG+ + A  +F+ M  + VVSWT                               
Sbjct: 167 IDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWT 226

Query: 219 AIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKN 277
           A+I GY  +   E A++LF  M    I P+    VS++ AC+  G+   G   + Y +KN
Sbjct: 227 AMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKN 286

Query: 278 --KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
             + G+  G    T ++D+  + G + +A+E+ E+M        W +++ +  +H
Sbjct: 287 CIEIGVYLG----TALIDMYSKCGSIKDAIEVFETM-PRKSLPTWNSMITSLGVH 336



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 119/231 (51%), Gaps = 12/231 (5%)

Query: 104  LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163
             +  V +  + +WN++I+  A+ G +   L  +  ++ LG+ P   +F   + SC+ L  
Sbjct: 1098 FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCD 1157

Query: 164  HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGG 223
               G    QQ    GF ++ F+++ALI+MY++CG LK ARA+FD +P + VVSWT++I G
Sbjct: 1158 LVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITG 1217

Query: 224  YGIHGHGEVAVQLFDEMLK--------SGIRPDGTAFVSVLSACSHAGLTDKGL-EYFYG 274
            Y  +   + A+ LF + L+        + +  D    VSVLSACS   ++ KG+ E  +G
Sbjct: 1218 YVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSR--VSGKGITEGVHG 1275

Query: 275  MKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
               K G          ++D   + GQ   + ++ + M  E D   W +++ 
Sbjct: 1276 FVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWM-EEKDDISWNSMIA 1325



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 1/146 (0%)

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
           ++  +I  +G  ++  L   LI++Y+  G +  A  +F  +      +W  II    I+G
Sbjct: 45  QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTING 104

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY 288
             E A+ L+  M+  GI  D   F  V+ AC++    D G +  +G   KYG        
Sbjct: 105 LSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLG-KVVHGSLIKYGFSGDVFVQ 163

Query: 289 TCMVDLLGRAGQLNEALELIESMLVE 314
             ++D   + G    AL++ E M V 
Sbjct: 164 NNLIDFYFKCGHTRFALKVFEKMRVR 189


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/511 (45%), Positives = 324/511 (63%), Gaps = 9/511 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V YNALISGY +N +V  +V+LF ++   G+  NS T++ L+P+    G+  L  C H  
Sbjct: 279 VAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGF 338

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G   +  V   + T++ +   ++  RK FD +PEK + +WNAMISGYAQNGL    
Sbjct: 339 VLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMA 398

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + L+ +M  L V P+ +T    LS+CA LGA S+G  + + I       N ++  ALI+M
Sbjct: 399 VALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALIDM 458

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG++ +AR IF+ M  K VVSW A+I GYG+HG G  A++L+ +ML + + P    F
Sbjct: 459 YAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSATF 518

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +SVL ACSH GL ++G + F  M + Y + PG EH TCMVDLLGRAGQL EA ELI    
Sbjct: 519 LSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFELISEFP 578

Query: 313 VEPDGA-VWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
               G  VWGALLGAC +HK+ +LA+LA  K+ +L+P N+GYYVLLSN+++  +      
Sbjct: 579 KSAVGPGVWGALLGACMVHKDSDLAKLASQKLFELDPENSGYYVLLSNLHTSKKQYSEAA 638

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
            VR   + R+L K PGY+ +E+  + H+FM GDR H Q+  IY  L+KL   + E     
Sbjct: 639 VVRQEAKSRKLVKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIYSYLEKLTAKMIEAGYRP 698

Query: 432 RSD------QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
            ++      ++  +EH+   +VHSEKLAIAFG+++T PGTEI ++KNLR+C DCH   K 
Sbjct: 699 ETEAALYDVEEEEKEHM--VKVHSEKLAIAFGLLSTEPGTEIRIIKNLRVCLDCHNATKF 756

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +SK+  R  +VRDA+RFHHF+ G CSC DYW
Sbjct: 757 ISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/320 (30%), Positives = 170/320 (53%), Gaps = 7/320 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMCCH 70
           TV +N L++G       SEAV  F +M   G V  ++ T+  +LP   +   + +G C H
Sbjct: 180 TVLWNTLLAGLS----GSEAVESFARMVCDGSVRPDATTLASVLPAAAEVADVTMGRCVH 235

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
               K GL     V   L+++Y KCG V+  R LFD + +  L+ +NA+ISGY+ NG+  
Sbjct: 236 SFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVG 295

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             + L+ E+ +LG+ P++ T V ++   +  G   +   +   +  +GF +N  ++ A+ 
Sbjct: 296 SSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAIT 355

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
            ++ R  +++ AR  FD MP KT+ SW A+I GY  +G  E+AV LF++M+K  +RP+  
Sbjct: 356 TLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPI 415

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
              S LSAC+  G    G ++ + +  +  L+P     T ++D+  + G ++EA  +  +
Sbjct: 416 TISSTLSACAQLGALSLG-KWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNT 474

Query: 311 MLVEPDGAVWGALLGACKIH 330
           M    +   W A++    +H
Sbjct: 475 M-DNKNVVSWNAMIAGYGLH 493



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 128/267 (47%), Gaps = 7/267 (2%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140
           D  V + L  +Y     VD+ RK+FD VP    + WN +++G +     +  +E +  M 
Sbjct: 148 DTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLS----GSEAVESFARMV 203

Query: 141 SLG-VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNL 199
             G V PDA T   VL + A +   ++G  V    +  G   +  +   LI++Y++CG++
Sbjct: 204 CDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDV 263

Query: 200 KKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC 259
           + AR +FD M +  +V++ A+I GY ++G    +V LF E++  G+ P+ +  V+++   
Sbjct: 264 ESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVH 323

Query: 260 SHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAV 319
           S  G  D   +  +G   K G        T +  L  R   +  A +  ++M  E     
Sbjct: 324 SPFG-HDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTM-PEKTMES 381

Query: 320 WGALLGACKIHKNVELAELAFGKVIKL 346
           W A++     +   E+A   F +++KL
Sbjct: 382 WNAMISGYAQNGLTEMAVALFEQMVKL 408


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 242/527 (45%), Positives = 340/527 (64%), Gaps = 15/527 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQG--VEINSVTMLCLLPICV 58
            FDE I S +  V   A+ SGYV N+LV  +++LF K+   G    ++    L       
Sbjct: 147 AFDE-IPSPN-PVIITAMASGYVRNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASA 204

Query: 59  DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYG--RKLFDQVPEKGLITW 116
                 +    H + VK GLD D  V N ++  Y K G  D G  RK+FD + EK +++W
Sbjct: 205 RIPDCGITSSLHALVVKTGLDGDAGVVNTMLDAYAKGGRRDLGAARKVFDTM-EKDVVSW 263

Query: 117 NAMISGYAQNGLATHVLELYREMKSLG--VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
           N+MI+ YAQNG++   L LYR+M ++   +  +AVT   +L +CAH G    G  +  Q+
Sbjct: 264 NSMIALYAQNGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQV 323

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
              G   N ++  ++++MY++CG ++ AR  F  +  K ++SW+A+I GYG+HGHG+ A+
Sbjct: 324 VRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEAL 383

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
            +F+EM +SG  P+   F+SVL+ACSHAGL DKG  ++  MK ++G++PG EHY CMVDL
Sbjct: 384 DIFNEMCRSGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDL 443

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           LGRAG L+EA  LI+ M V+PD A+WGALL AC+IHKNVELAE++  ++ +L+  N GYY
Sbjct: 444 LGRAGCLDEAYGLIKEMKVKPDAAIWGALLSACRIHKNVELAEISAKRLFELDATNCGYY 503

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
           VLLSNIY+EA     + R+R++++ R ++K PGYS VELKGR HLF VGD++H Q  EIY
Sbjct: 504 VLLSNIYAEAGMWKDVERMRVLVKTRGIEKPPGYSSVELKGRTHLFYVGDKSHPQHKEIY 563

Query: 415 RMLDKLENLVQE-----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVV 469
             L KL   +QE     + G+   D  + EE  +   +HSEKLAIAF ++N+ PG+ I V
Sbjct: 564 SYLGKLLEKMQEAGYVPNTGSVLHDL-DEEEKASALHIHSEKLAIAFALMNSVPGSVIHV 622

Query: 470 MKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +KNLR+C DCH  IKL++KI  R+ IVRD  RFHHFK G CSC DYW
Sbjct: 623 IKNLRVCTDCHTAIKLITKIAQREIIVRDLQRFHHFKDGSCSCGDYW 669



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 135/300 (45%), Gaps = 11/300 (3%)

Query: 66  GMCCHCICVKFGL-DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYA 124
           G   H + ++ GL   D    + L+ MY  C      RK FD++P    +   AM SGY 
Sbjct: 108 GRQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYV 167

Query: 125 QNGLATHVLELYREMKSLG--VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN 182
           +N L    L L+R++ + G     D    +   S+ A +    +   +   +   G   +
Sbjct: 168 RNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLDGD 227

Query: 183 PFLNNALINMYARCG--NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
             + N +++ YA+ G  +L  AR +FD M  K VVSW ++I  Y  +G    A+ L+ +M
Sbjct: 228 AGVVNTMLDAYAKGGRRDLGAARKVFDTM-EKDVVSWNSMIALYAQNGMSADALGLYRKM 286

Query: 241 L--KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
           L     I+ +     ++L AC+HAG    G +  +    + GL+      T +VD+  + 
Sbjct: 287 LNVSGSIKCNAVTLSAILLACAHAGTIQTG-KCIHNQVVRMGLEENVYVGTSVVDMYSKC 345

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           G++  A +  +  + E +   W A++    +H + + A   F ++ +    N  Y   +S
Sbjct: 346 GRVEMARKAFQK-IKEKNILSWSAMITGYGMHGHGQEALDIFNEMCR-SGQNPNYITFIS 403


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 234/552 (42%), Positives = 340/552 (61%), Gaps = 37/552 (6%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +F++ +  T++   +N++I+    +    EA+  F  MR+  ++ N  T  C +  C   
Sbjct: 31  LFNKYVDKTNV-FSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSAL 89

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H   + FG + D  V + L+ MY KCG +   R LFD++  + +++W +MI
Sbjct: 90  LDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMI 149

Query: 121 SGY-------------------------------AQNGLATHVLELYREMKSLG-VCPDA 148
           +GY                               AQNG++T  +E++  M   G +  +A
Sbjct: 150 TGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNA 209

Query: 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208
           VT   VL +CAH G+  +G  +  Q+   G  SN F+  ++I+MY +CG ++ AR  FD 
Sbjct: 210 VTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDR 269

Query: 209 MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
           M  K V SW+A++ GYG+HGH + A+++F EM  +G++P+   FVSVL+ACSHAGL ++G
Sbjct: 270 MREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEG 329

Query: 269 LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACK 328
             +F  M +++ ++PG EHY CMVDLLGRAG L EA +LI+ M + PD  VWGALLGAC+
Sbjct: 330 WHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACR 389

Query: 329 IHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGY 388
           +HKNV+L E++  K+ +L+P N GYYVLLSNIY++A   + + R+R++M+   L K PG+
Sbjct: 390 MHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGF 449

Query: 389 SYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----HDGTKRSDQKNSEEHLND 444
           S V++KGRVH+F+VGDR H Q  +IY  L+KL   +QE     D T        EE    
Sbjct: 450 SLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMV 509

Query: 445 TEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHH 504
             VHSEKLA+AFGI+NT PGT I ++KNLR+CGDCH  IK +SKIVDR+ +VRD+ RFHH
Sbjct: 510 LRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHH 569

Query: 505 FKSGFCSCKDYW 516
           F+ G CSC DYW
Sbjct: 570 FRDGLCSCGDYW 581


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/529 (44%), Positives = 333/529 (62%), Gaps = 15/529 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM------REQGVEINSVTMLCLL 54
           VFDE  K     V + ++I GY LN    +AVSLF  +       +  + ++S+ M+ ++
Sbjct: 133 VFDEIPKRN--IVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVI 190

Query: 55  PICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS--VDYGRKLFDQVPEKG 112
             C       L    H   +K G D   SVGN L+  Y K G   V   RK+FDQ+ +K 
Sbjct: 191 SACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKD 250

Query: 113 LITWNAMISGYAQNGLATHVLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVE 171
            +++N+++S YAQ+G++    +++R + K   V  + +T   VL + +H GA  +G  + 
Sbjct: 251 RVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIH 310

Query: 172 QQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGE 231
            Q+   G   +  +  ++I+MY +CG ++ AR  FD M  K V SWTA+I GYG+HGH  
Sbjct: 311 DQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAA 370

Query: 232 VAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCM 291
            A++LF  M+ SG+RP+   FVSVL+ACSHAGL D G  +F  MK ++G++PG EHY CM
Sbjct: 371 KALELFPAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCM 430

Query: 292 VDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351
           VDLLGRAG L +A +LI+ M +EPD  +W +LL AC+IHKNVELAE++  ++ +L+P N 
Sbjct: 431 VDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLLAACRIHKNVELAEISVARLFELDPSNC 490

Query: 352 GYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTV 411
           GYY+LLS+IY+++     + RVRM M+ R L K PG+S +EL G VH+F++GD  H Q  
Sbjct: 491 GYYMLLSHIYADSGRWKDVERVRMTMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQRE 550

Query: 412 EIYRMLDKLENLVQE----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEI 467
           +IY  L +L   + E     + +      + EE      VHSEKLAIAFGI+NT PG+ +
Sbjct: 551 KIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTV 610

Query: 468 VVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            V+KNLR+C DCH  IKL+SKIVDR+F+VRDA RFHHFK GFCSC DYW
Sbjct: 611 NVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGFCSCGDYW 659



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 155/360 (43%), Gaps = 52/360 (14%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N++I+    +   +EA+  F  MR+  +     +  C +  C     ++ G   H    
Sbjct: 44  WNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFSGKQTHQQAF 103

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
            FG   D  V + L+ MY  CG ++  RK+FD++P++ +++W +MI GY  NG A   + 
Sbjct: 104 VFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVS 163

Query: 135 LYREMKSLGVCPDAVTF------VGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
           L++++       DA  F      V V+S+C+ + A  +   +   +   GF     + N 
Sbjct: 164 LFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNT 223

Query: 189 LINMYARCGN--LKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           L++ YA+ G   +  AR IFD +  K  VS+ +I+  Y   G    A  +F  ++K  + 
Sbjct: 224 LLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVV 283

Query: 247 P-DGTAFVSVLSACSHAG-----------LTDKGLE------------------------ 270
             +     +VL A SH+G           +   GLE                        
Sbjct: 284 TFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARL 343

Query: 271 YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGAC 327
            F  MKNK         +T M+   G  G   +ALEL  +M+   V P+   + ++L AC
Sbjct: 344 AFDRMKNK-----NVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAAC 398



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 122/231 (52%), Gaps = 11/231 (4%)

Query: 104 LFDQ-VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162
           LF++ V +  + +WN++I+  A++G +   L  +  M+ L + P   +F   + +C+ L 
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLL 90

Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIG 222
               G +  QQ    G+ S+ F+++ALI MY+ CG L+ AR +FD +P++ +VSWT++I 
Sbjct: 91  DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIR 150

Query: 223 GYGIHGHGEVAVQLFDEMLKSGIRPDGTAF------VSVLSACSHAGLTDKGL-EYFYGM 275
           GY ++G+   AV LF ++L      D T F      VSV+SACS   +  KGL E  +  
Sbjct: 151 GYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSR--VAAKGLTESIHSF 208

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEAL-ELIESMLVEPDGAVWGALLG 325
             K G   G      ++D   + G+   A+   I   +V+ D   + +++ 
Sbjct: 209 VIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMS 259


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 236/509 (46%), Positives = 319/509 (62%), Gaps = 4/509 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            + ++A+I+ Y  +    +A+ LF  M   G+  + +T+  LL  C D   L +G   H 
Sbjct: 197 VISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHH 256

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           I  KFGLDLD  V   L+ MY KC  ++  R LFD++PE+ L+TW  MI GYA+ G A  
Sbjct: 257 IVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANE 316

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L L+ +M+  GV PD V  V V+ +CA LGA      ++  IQ   F  +  L  A+I+
Sbjct: 317 SLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMID 376

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           M+A+CG ++ AR IFD M  K V+SW+A+I  YG HG G  A+ LF  ML+SGI P+   
Sbjct: 377 MHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKIT 436

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            VS+L ACSHAGL ++GL +F  M   Y ++   +HYTC+VDLLGRAG+L+EAL+LIESM
Sbjct: 437 LVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESM 496

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            VE D  +WGA LGAC+ HK+V LAE A   +++L+P N G+Y+LLSNIY+ A   + + 
Sbjct: 497 TVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVA 556

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML----DKLENLVQEH 427
           + R +M +RRLKK PG++++E+  + H F VGD  H ++ EIY ML    +KLE +    
Sbjct: 557 KTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVP 616

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           D        + E  +     HSEKLAIAFG+I T   T I ++KNLR+CGDCH F KLVS
Sbjct: 617 DTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVS 676

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            I  R  IVRDA RFHHFK G CSC DYW
Sbjct: 677 AITGRVIIVRDANRFHHFKEGACSCGDYW 705



 Score =  197 bits (502), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 115/303 (37%), Positives = 165/303 (54%), Gaps = 9/303 (2%)

Query: 28  VSEAVSLFGKMREQ---GVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSV 84
           V + ++ FG  RE    G   ++ T+  ++  C D   L +G   H I  KFGLDLD  V
Sbjct: 8   VGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFV 67

Query: 85  GNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGV 144
              L+ MYVKC  ++  R LFD++ E+ L+TW  MI GYA+ G A   L L+ +M+  GV
Sbjct: 68  CAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGV 127

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARA 204
            PD V  V V+ +CA LGA      ++  IQ   F  +  L  A+I+MYA+CG ++ AR 
Sbjct: 128 VPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESARE 187

Query: 205 IFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL 264
           IFD M  K V+SW+A+I  YG HG G  A+ LF  ML SG+ PD     S+L ACS    
Sbjct: 188 IFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKN 247

Query: 265 TDKGLEYFYGMKNKYGLQPGPEHYTC--MVDLLGRAGQLNEALELIESMLVEPDGAVWGA 322
              G    + +  K+GL    +H+ C  +VD+ G+  ++ +A  L + M  E D   W  
Sbjct: 248 LQMG-RLIHHIVYKFGLD--LDHFVCAALVDMYGKCREIEDARFLFDKM-PERDLVTWTV 303

Query: 323 LLG 325
           ++G
Sbjct: 304 MIG 306



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 169/321 (52%), Gaps = 8/321 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  +I GY      +E++ LF KMRE+GV  + V M+ ++  C   G +         
Sbjct: 97  VTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDY 156

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             +    LD  +G  ++ MY KCG V+  R++FD++ EK +I+W+AMI+ Y  +G     
Sbjct: 157 IQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKA 216

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+L+R M S G+ PD +T   +L +C+ L    +G  +   +   G   + F+  AL++M
Sbjct: 217 LDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDM 276

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +C  ++ AR +FD MP + +V+WT +IGGY   G+   ++ LFD+M + G+ PD  A 
Sbjct: 277 YGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAM 336

Query: 253 VSVLSACSHAGLTDKGL---EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
           V+V+ AC+  G   K     +Y    K +  +  G    T M+D+  + G +  A E+ +
Sbjct: 337 VTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILG----TAMIDMHAKCGCVESAREIFD 392

Query: 310 SMLVEPDGAVWGALLGACKIH 330
            M  E +   W A++ A   H
Sbjct: 393 RM-EEKNVISWSAMIAAYGYH 412



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 106/215 (49%), Gaps = 8/215 (3%)

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           M+ G+A+ G   +    +RE+   G  PD  T   V+ +C  L    +G  +   +   G
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
              + F+  AL++MY +C  ++ AR +FD M  + +V+WT +IGGY   G    ++ LF+
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGL---EYFYGMKNKYGLQPGPEHYTCMVDLL 295
           +M + G+ PD  A V+V+ AC+  G   K     +Y    K +  +  G    T M+D+ 
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILG----TAMIDMY 176

Query: 296 GRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
            + G +  A E+ + M  E +   W A++ A   H
Sbjct: 177 AKCGCVESAREIFDRM-EEKNVISWSAMIAAYGYH 210


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/510 (44%), Positives = 319/510 (62%), Gaps = 5/510 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +NA+I+GY  +    EA++ F +M+   V  N  TM+ +L  C   G L LG     
Sbjct: 229 AVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRS 288

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                GL  +  + N L+ MY KCG +D  R LF+ + EK +I+WN MI GY+       
Sbjct: 289 WIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKE 348

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG-SNPFLNNALI 190
            L L+R+M+   V P+ VTFV +L +CA+LGA  +G  +   I     G +N  L  +LI
Sbjct: 349 ALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLI 408

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MYA+CGN++ A+ +F GM  K++ SW A+I G  +HGH  +A++LF +M   G  PD  
Sbjct: 409 DMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDI 468

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            FV VLSACSHAGL + G + F  M   Y + P  +HY CM+DLLGRAG  +EA  L+++
Sbjct: 469 TFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKN 528

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M ++PDGA+WG+LLGAC++H NVEL E A   + +LEP N G YVLLSNIY+ A   D +
Sbjct: 529 MEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDV 588

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE---- 426
            R+R  + ++ +KK PG S +E+   VH F+VGD+ H Q+ +IY+MLD+++ L+++    
Sbjct: 589 ARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAGHV 648

Query: 427 HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
            D ++     + E        HSEKLAIAFG+I+T P T I ++KNLR+CG+CH  IKL+
Sbjct: 649 PDTSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIVKNLRVCGNCHSAIKLI 708

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SKI +R+ I RD  RFHHFK G CSC DYW
Sbjct: 709 SKIFNREIIARDRNRFHHFKDGSCSCMDYW 738



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/388 (30%), Positives = 192/388 (49%), Gaps = 35/388 (9%)

Query: 4   ESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL 63
           ESI+  +  + +N +I G  L+S    A+  + +M   GVE NS T   LL  C   G  
Sbjct: 90  ESIEQPNQFI-WNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGAT 148

Query: 64  WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYG---------------------- 101
             G   H   +K GL+ D  V   L+ MY + G + Y                       
Sbjct: 149 QEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGY 208

Query: 102 ---------RKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFV 152
                    R+LF+++P +  ++WNAMI+GYAQ+G     L  ++EMK   V P+  T V
Sbjct: 209 TLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMV 268

Query: 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK 212
            VLS+CA  G+  +G  V   I+ +G GSN  L NALI+MY++CG+L KAR +F+G+  K
Sbjct: 269 TVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEK 328

Query: 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF 272
            ++SW  +IGGY      + A+ LF +M +S + P+   FVS+L AC++ G  D G    
Sbjct: 329 DIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIH 388

Query: 273 YGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKN 332
             +  K+        +T ++D+  + G +  A ++   M  +  G+ W A++    +H +
Sbjct: 389 AYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGS-WNAMISGLAMHGH 447

Query: 333 VELAELAFGKVIK--LEPMNTGYYVLLS 358
             +A   F ++     EP +  +  +LS
Sbjct: 448 ANMALELFRQMRDEGFEPDDITFVGVLS 475



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 135/296 (45%), Gaps = 37/296 (12%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
           G++ Y   LF+ + +     WN MI G + +      ++ Y  M   GV P++ TF  +L
Sbjct: 80  GNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLL 139

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGN----------------- 198
            SCA +GA   G ++   +   G  S+PF++ +LINMYA+ G                  
Sbjct: 140 KSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAV 199

Query: 199 --------------LKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
                         L  AR +F+ +P +  VSW A+I GY   G  E A+  F EM ++ 
Sbjct: 200 SFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRAN 259

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
           + P+ +  V+VLSAC+ +G  + G  +       +GL         ++D+  + G L++A
Sbjct: 260 VAPNESTMVTVLSACAQSGSLELG-NWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKA 318

Query: 305 LELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK---LEPMNTGYYVLL 357
            +L E  + E D   W  ++G    H N     LA  + ++   +EP +  +  +L
Sbjct: 319 RDLFEG-ICEKDIISWNVMIGGYS-HMNSYKEALALFRKMQQSNVEPNDVTFVSIL 372


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/529 (44%), Positives = 334/529 (63%), Gaps = 15/529 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM------REQGVEINSVTMLCLL 54
           VFDE  K     V + ++I GY LN    +AVSLF  +       +  + ++S+ ++ ++
Sbjct: 133 VFDEIPKRN--IVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVI 190

Query: 55  PICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS--VDYGRKLFDQVPEKG 112
             C       L    H   +K G D   SVGN L+  Y K G   V   RK+FDQ+ +K 
Sbjct: 191 SACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKD 250

Query: 113 LITWNAMISGYAQNGLATHVLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVE 171
            +++N+++S YAQ+G++    E++R + K+  V  +A+T   VL + +H GA  +G  + 
Sbjct: 251 RVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIH 310

Query: 172 QQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGE 231
            Q+   G   +  +  ++I+MY +CG ++ AR  FD M  K V SWTA+I GYG+HGH  
Sbjct: 311 DQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAA 370

Query: 232 VAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCM 291
            A++LF  M+ SG+RP+   FVSVL+ACSHAGL  +G  +F  MK ++G++PG EHY CM
Sbjct: 371 KALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCM 430

Query: 292 VDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351
           VDLLGRAG L +A +LI+ M ++PD  +W +LL AC+IHKNVELAE++  ++ +L+  N 
Sbjct: 431 VDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNC 490

Query: 352 GYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTV 411
           GYY+LLS+IY++A     + RVRM+M+ R L K PG+S +EL G VH+F++GD  H Q  
Sbjct: 491 GYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQRE 550

Query: 412 EIYRMLDKLENLVQE----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEI 467
           +IY  L +L   + E     + +      + EE      VHSEKLAIAFGI+NT PG+ +
Sbjct: 551 KIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTV 610

Query: 468 VVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            V+KNLR+C DCH  IKL+SKIVDR+F+VRDA RFHHFK G CSC DYW
Sbjct: 611 NVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 158/339 (46%), Gaps = 11/339 (3%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N++I+    +   +EA+  F  MR+  +     +  C +  C     ++ G   H    
Sbjct: 44  WNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAF 103

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
            FG   D  V + L+ MY  CG ++  RK+FD++P++ +++W +MI GY  NG A   + 
Sbjct: 104 VFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVS 163

Query: 135 LYREM------KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
           L++++          +  D++  V V+S+C+ + A  +   +   +   GF     + N 
Sbjct: 164 LFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNT 223

Query: 189 LINMYARCGN--LKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           L++ YA+ G   +  AR IFD +  K  VS+ +I+  Y   G    A ++F  ++K+ + 
Sbjct: 224 LLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVV 283

Query: 247 P-DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
             +     +VL A SH+G    G +  +    + GL+      T ++D+  + G++  A 
Sbjct: 284 TFNAITLSTVLLAVSHSGALRIG-KCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETAR 342

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI 344
           +  + M    +   W A++    +H +   A   F  +I
Sbjct: 343 KAFDRM-KNKNVRSWTAMIAGYGMHGHAAKALELFPAMI 380



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 121/231 (52%), Gaps = 11/231 (4%)

Query: 104 LFDQ-VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162
           LF++ V +  + +WN++I+  A++G +   L  +  M+ L + P   +F   + +C+ L 
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90

Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIG 222
               G +  QQ    G+ S+ F+++ALI MY+ CG L+ AR +FD +P++ +VSWT++I 
Sbjct: 91  DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIR 150

Query: 223 GYGIHGHGEVAVQLFDEML------KSGIRPDGTAFVSVLSACSHAGLTDKGL-EYFYGM 275
           GY ++G+   AV LF ++L         +  D    VSV+SACS   +  KGL E  +  
Sbjct: 151 GYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSR--VPAKGLTESIHSF 208

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEAL-ELIESMLVEPDGAVWGALLG 325
             K G   G      ++D   + G+   A+   I   +V+ D   + +++ 
Sbjct: 209 VIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMS 259


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/527 (42%), Positives = 338/527 (64%), Gaps = 15/527 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM--REQGVEINSVTMLCLLPICV 58
            FDE      + V   A+ SGYV N+LV  ++ LF  M   +    ++    L       
Sbjct: 151 AFDEIPDPNPVIV--TAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASA 208

Query: 59  DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDY--GRKLFDQVPEKGLITW 116
                 +    H +  K G + +  V N ++  Y K GS D    RK+FD + E+ +++W
Sbjct: 209 RVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSW 267

Query: 117 NAMISGYAQNGLATHVLELYREMKSLG--VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
           N+MI+ YAQNG++   + LY +M ++G  +  +AV    VL +CAH GA   G  +  Q+
Sbjct: 268 NSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQV 327

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
              G   N ++  ++++MY++CG ++ A   F  +  K ++SW+A+I GYG+HG G+ A+
Sbjct: 328 VRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEAL 387

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
           ++F EM +SG+RP+   F+SVL+ACSHAGL D+G  ++  MK ++G++ G EHY CMVDL
Sbjct: 388 EIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDL 447

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           LGRAG L+EA  LI+ M V+PD A+WGALL AC+IHKNVELAE++  ++ +L+  N+GYY
Sbjct: 448 LGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYY 507

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
           VLLSNIY+EAR    + R+R++++ RR++K PGYS  ELKG+++LF VGD++H Q +EIY
Sbjct: 508 VLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIY 567

Query: 415 RMLDKLENLVQE-----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVV 469
             L+KL   +QE     + G+   D  + EE  +   +HSEKLA+AF ++N+ P + I +
Sbjct: 568 SYLEKLLERMQEAGYVPNTGSVLHDL-DEEEKESALRIHSEKLAVAFALMNSVPRSVIHI 626

Query: 470 MKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +KNLR+C DCH  +K ++KI +R+ I+RD  RFHHFK G CSC+DYW
Sbjct: 627 IKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 673



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 128/269 (47%), Gaps = 12/269 (4%)

Query: 70  HCICVKFGL-DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
           H + ++ GL   D    + L+ MY  C      R+ FD++P+   +   AM SGY +N L
Sbjct: 116 HLLALRSGLFPSDPYSASALLHMYHHCSRPMDARRAFDEIPDPNPVIVTAMASGYVRNNL 175

Query: 129 ATHVLELYREM---KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
             H LEL+R M    S  V  +A   V   S+ A +    V   +   I   GF  N  +
Sbjct: 176 VYHSLELFRAMIASDSASVVDEAAALVA-FSASARVPDRGVTASLHALIAKIGFERNAGV 234

Query: 186 NNALINMYARCG--NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK- 242
            N +++ YA+ G  +L+ AR +FD M R  VVSW ++I  Y  +G    A+ L+ +ML  
Sbjct: 235 VNTMLDSYAKGGSRDLEVARKVFDTMERD-VVSWNSMIALYAQNGMSAEAIGLYSKMLNV 293

Query: 243 -SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301
             GI+ +  A  +VL AC+HAG    G +  +    + GL+      T +VD+  + G++
Sbjct: 294 GGGIKCNAVALSAVLLACAHAGAIQTG-KRIHNQVVRMGLEENVYVGTSIVDMYSKCGRV 352

Query: 302 NEALELIESMLVEPDGAVWGALLGACKIH 330
             A       + E +   W A++    +H
Sbjct: 353 EMASRAFRK-IKEKNILSWSAMITGYGMH 380


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/529 (44%), Positives = 334/529 (63%), Gaps = 15/529 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM------REQGVEINSVTMLCLL 54
           VFDE  K     V + ++I GY LN    +AVSLF  +       +  + ++S+ ++ ++
Sbjct: 133 VFDEIPKRD--IVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVI 190

Query: 55  PICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS--VDYGRKLFDQVPEKG 112
             C       L    H   +K G D   SVGN L+  Y K G   V   RK+FDQ+ +K 
Sbjct: 191 SACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKD 250

Query: 113 LITWNAMISGYAQNGLATHVLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVE 171
            +++N+++S YAQ+G++    E++R + K+  V  +A+T   VL + +H GA  +G  + 
Sbjct: 251 RVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIH 310

Query: 172 QQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGE 231
            Q+   G   +  +  ++I+MY +CG ++ AR  FD M  K V SWTA+I GYG+HGH  
Sbjct: 311 DQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAA 370

Query: 232 VAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCM 291
            A++LF  M+ SG+RP+   FVSVL+ACSHAGL  +G  +F  MK ++G++PG EHY CM
Sbjct: 371 KALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCM 430

Query: 292 VDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351
           VDLLGRAG L +A +LI+ M ++PD  +W +LL AC+IHKNVELAE++  ++ +L+  N 
Sbjct: 431 VDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNC 490

Query: 352 GYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTV 411
           GYY+LLS+IY++A     + RVRM+M+ R L K PG+S +EL G VH+F++GD  H Q  
Sbjct: 491 GYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQRE 550

Query: 412 EIYRMLDKLENLVQE----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEI 467
           +IY  L +L   + E     + +      + EE      VHSEKLAIAFGI+NT PG+ +
Sbjct: 551 KIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTV 610

Query: 468 VVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            V+KNLR+C DCH  IKL+SKIVDR+F+VRDA RFHHFK G CSC DYW
Sbjct: 611 NVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 158/339 (46%), Gaps = 11/339 (3%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N++I+    +   +EA+  F  MR+  +     +  C +  C     ++ G   H    
Sbjct: 44  WNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAF 103

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
            FG   D  V + L+ MY  CG ++  RK+FD++P++ +++W +MI GY  NG A   + 
Sbjct: 104 VFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVS 163

Query: 135 LYREM------KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
           L++++          +  D++  V V+S+C+ + A  +   +   +   GF     + N 
Sbjct: 164 LFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNT 223

Query: 189 LINMYARCGN--LKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           L++ YA+ G   +  AR IFD +  K  VS+ +I+  Y   G    A ++F  ++K+ + 
Sbjct: 224 LLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVV 283

Query: 247 P-DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
             +     +VL A SH+G    G +  +    + GL+      T ++D+  + G++  A 
Sbjct: 284 TFNAITLSTVLLAVSHSGALRIG-KCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETAR 342

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI 344
           +  + M    +   W A++    +H +   A   F  +I
Sbjct: 343 KAFDRM-KNKNVRSWTAMIAGYGMHGHAAKALELFPAMI 380



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 121/231 (52%), Gaps = 11/231 (4%)

Query: 104 LFDQ-VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162
           LF++ V +  + +WN++I+  A++G +   L  +  M+ L + P   +F   + +C+ L 
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90

Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIG 222
               G +  QQ    G+ S+ F+++ALI MY+ CG L+ AR +FD +P++ +VSWT++I 
Sbjct: 91  DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIR 150

Query: 223 GYGIHGHGEVAVQLFDEML------KSGIRPDGTAFVSVLSACSHAGLTDKGL-EYFYGM 275
           GY ++G+   AV LF ++L         +  D    VSV+SACS   +  KGL E  +  
Sbjct: 151 GYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSR--VPAKGLTESIHSF 208

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEAL-ELIESMLVEPDGAVWGALLG 325
             K G   G      ++D   + G+   A+   I   +V+ D   + +++ 
Sbjct: 209 VIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMS 259


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/523 (45%), Positives = 323/523 (61%), Gaps = 27/523 (5%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           T  +V +NA+I GY  N    EA++LF +M E+GV++  V++L  L  C + G L  GM 
Sbjct: 224 TKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMR 283

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            H + V+ GLD + SV N L+TMY KC  VD    +FD++  +  ++WNAMI G AQNG 
Sbjct: 284 VHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGC 343

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG---------AHSVGLEVEQQIQANGF 179
           +   + L+  M+   V PD+ T V V+ + A +           +S+ L ++Q +     
Sbjct: 344 SEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDV----- 398

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
               ++  ALI+MYA+CG +  AR +F+    + V++W A+I GYG HG G+ AV+LF+E
Sbjct: 399 ----YVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEE 454

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M   GI P+ T F+SVLSACSHAGL D+G EYF  MK  YGL+PG EHY  MVDLLGRAG
Sbjct: 455 MKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAG 514

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
           +L+EA   I+ M ++P  +V+GA+LGACK+HKNVELAE +  K+ +L P    Y+VLL+N
Sbjct: 515 KLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLAN 574

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
           IY+ A     + RVR  M +  L+K PG+S ++LK  +H F  G  NH Q  EIY  L K
Sbjct: 575 IYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAK 634

Query: 420 L-ENL-----VQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
           L E +     V + D     +     + LN    HSEKLAIAFG+I T+PGT I + KNL
Sbjct: 635 LIEEIKAVGYVPDTDSIHDVEDDVKAQLLN---THSEKLAIAFGLIRTAPGTTIQIKKNL 691

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           R+C DCH   KL+S +  R+ I+RD  RFHHFK G CSC DYW
Sbjct: 692 RVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 113/352 (32%), Positives = 175/352 (49%), Gaps = 11/352 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +NAL++GY  N L   A+ +  +M+E+ G   +S+T++ +LP C +   L      H 
Sbjct: 126 VAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHA 185

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             ++ GL+   +V   ++  Y KCG +   R +FD +P K  ++WNAMI GYAQNG +  
Sbjct: 186 FAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSRE 245

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L L+  M   GV    V+ +  L +C  LG    G+ V + +   G  SN  + NALI 
Sbjct: 246 ALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALIT 305

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY++C  +  A  +FD + R+T VSW A+I G   +G  E AV+LF  M    ++PD   
Sbjct: 306 MYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFT 365

Query: 252 FVSVLSACSHAGLTDK-GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            VSV+ A   A ++D     + +G   +  L       T ++D+  + G++N A  L  S
Sbjct: 366 LVSVIPAL--ADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNS 423

Query: 311 MLVEPDGAVWGALLGACKIH----KNVELAELAFGKVIKLEPMNTGYYVLLS 358
              E     W A++     H      VEL E    K I + P  T +  +LS
Sbjct: 424 AR-ERHVITWNAMIHGYGSHGFGKAAVELFEEM--KSIGIVPNETTFLSVLS 472



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 164/347 (47%), Gaps = 4/347 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           ++A +      S +  A++ F  M   G      T   LL +C   G L  G   H    
Sbjct: 27  HHARLRASAARSDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLA 86

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             G+D +      L  MY KC      R++FD++P +  + WNA+++GYA+NGLA   +E
Sbjct: 87  ARGIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAME 146

Query: 135 LYREMK-SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
           +   M+   G  PD++T V VL +CA+  A +   E       +G      +  A+++ Y
Sbjct: 147 MVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAY 206

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
            +CG+++ AR +FD MP K  VSW A+I GY  +G    A+ LF+ M++ G+     + +
Sbjct: 207 CKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVL 266

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           + L AC   G  D+G+   + +  + GL         ++ +  +  +++ A  + +  L 
Sbjct: 267 AALQACGELGCLDEGMR-VHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDE-LD 324

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
                 W A++  C  +   E A   F + ++LE +    + L+S I
Sbjct: 325 RRTQVSWNAMILGCAQNGCSEDAVRLFTR-MQLENVKPDSFTLVSVI 370


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/523 (45%), Positives = 323/523 (61%), Gaps = 27/523 (5%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           T  +V +NA+I GY  N    EA++LF +M E+GV++  V++L  L  C + G L  GM 
Sbjct: 224 TKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMR 283

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            H + V+ GLD + SV N L+TMY KC  VD    +FD++  +  ++WNAMI G AQNG 
Sbjct: 284 VHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGC 343

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG---------AHSVGLEVEQQIQANGF 179
           +   + L+  M+   V PD+ T V V+ + A +           +S+ L ++Q +     
Sbjct: 344 SEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDV----- 398

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
               ++  ALI+MYA+CG +  AR +F+    + V++W A+I GYG HG G+ AV+LF+E
Sbjct: 399 ----YVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEE 454

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M   GI P+ T F+SVLSACSHAGL D+G EYF  MK  YGL+PG EHY  MVDLLGRAG
Sbjct: 455 MKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAG 514

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
           +L+EA   I+ M ++P  +V+GA+LGACK+HKNVELAE +  K+ +L P    Y+VLL+N
Sbjct: 515 KLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLAN 574

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
           IY+ A     + RVR  M +  L+K PG+S ++LK  +H F  G  NH Q  EIY  L K
Sbjct: 575 IYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAK 634

Query: 420 L-ENL-----VQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
           L E +     V + D     +     + LN    HSEKLAIAFG+I T+PGT I + KNL
Sbjct: 635 LIEEIKAVGYVPDTDSIHDVEDDVKAQLLN---THSEKLAIAFGLIRTAPGTTIQIKKNL 691

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           R+C DCH   KL+S +  R+ I+RD  RFHHFK G CSC DYW
Sbjct: 692 RVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 113/352 (32%), Positives = 175/352 (49%), Gaps = 11/352 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +NAL++GY  N L   A+ +  +M+E+ G   +S+T++ +LP C +   L      H 
Sbjct: 126 VAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHA 185

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             ++ GL+   +V   ++  Y KCG +   R +FD +P K  ++WNAMI GYAQNG +  
Sbjct: 186 FAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSRE 245

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L L+  M   GV    V+ +  L +C  LG    G+ V + +   G  SN  + NALI 
Sbjct: 246 ALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALIT 305

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY++C  +  A  +FD + R+T VSW A+I G   +G  E AV+LF  M    ++PD   
Sbjct: 306 MYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFT 365

Query: 252 FVSVLSACSHAGLTDK-GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            VSV+ A   A ++D     + +G   +  L       T ++D+  + G++N A  L  S
Sbjct: 366 LVSVIPAL--ADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNS 423

Query: 311 MLVEPDGAVWGALLGACKIH----KNVELAELAFGKVIKLEPMNTGYYVLLS 358
              E     W A++     H      VEL E    K I + P  T +  +LS
Sbjct: 424 AR-ERHVITWNAMIHGYGSHGFGKAAVELFEEM--KSIGIVPNETTFLSVLS 472



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 158/331 (47%), Gaps = 4/331 (1%)

Query: 31  AVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90
           A++ F  M   G      T   LL +C   G L  G   H      G+D +      L  
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 91  MYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK-SLGVCPDAV 149
           MY KC      R++FD++P +  + WNA+++GYA+NGLA   +E+   M+   G  PD++
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
           T V VL +CA+  A +   E       +G      +  A+++ Y +CG+++ AR +FD M
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWM 222

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
           P K  VSW A+I GY  +G    A+ LF+ M++ G+     + ++ L AC   G  D+G+
Sbjct: 223 PTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGM 282

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
              + +  + GL         ++ +  +  +++ A  + +  L       W A++  C  
Sbjct: 283 R-VHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDE-LDRRTQVSWNAMILGCAQ 340

Query: 330 HKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           +   E A   F + ++LE +    + L+S I
Sbjct: 341 NGCSEDAVRLFTR-MQLENVKPDSFTLVSVI 370


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/515 (42%), Positives = 333/515 (64%), Gaps = 13/515 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKM--REQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
           V   A+ SGYV N+LV  ++ LF  M   +    ++    L             +    H
Sbjct: 16  VIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLH 75

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDY--GRKLFDQVPEKGLITWNAMISGYAQNGL 128
            +  K G + +  V N ++  Y K GS D    RK+FD + E+ +++WN+MI+ YAQNG+
Sbjct: 76  ALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGM 134

Query: 129 ATHVLELYREMKSLG--VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
           +   + LY +M ++G  +  +AV    VL +CAH GA   G  +  Q+   G   N ++ 
Sbjct: 135 SAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQVVRMGLEENVYVG 194

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
            ++++MY++CG ++ A   F  +  K ++SW+A+I GYG+HG G+ A+++F EM +SG+R
Sbjct: 195 TSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLR 254

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           P+   F+SVL+ACSHAGL D+G  ++  MK ++G++ G EHY CMVDLLGRAG L+EA  
Sbjct: 255 PNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYS 314

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366
           LI+ M V+PD A+WGALL AC+IHKNVELAE++  ++ +L+  N+GYYVLLSNIY+EA  
Sbjct: 315 LIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEAGM 374

Query: 367 LDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE 426
              + R+R++++ RR++K PGYS  ELKG+++LF VGD++H Q +EIY  L+KL   +QE
Sbjct: 375 WKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQE 434

Query: 427 -----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHL 481
                + G+   D  + EE  +   +HSEKLA+AF ++N+ P + I ++KNLR+C DCH 
Sbjct: 435 AGYVPNTGSVLHDL-DEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHT 493

Query: 482 FIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +K ++KI +R+ I+RD  RFHHFK G CSC+DYW
Sbjct: 494 AMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 528



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 116/237 (48%), Gaps = 11/237 (4%)

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM---KSLGVCPDAVTFVGVLSS 157
            R+ FD++P+   +   AM SGY +N L  H LEL+R M    S  V  +A   V   S+
Sbjct: 3   ARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVA-FSA 61

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG--NLKKARAIFDGMPRKTVV 215
            A +    V   +   I   GF  N  + N +++ YA+ G  +L+ AR +FD M R  VV
Sbjct: 62  SARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTMERD-VV 120

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLK--SGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
           SW ++I  Y  +G    A+ L+ +ML    GI+ +  A  +VL AC+HAG    G ++ +
Sbjct: 121 SWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTG-KHIH 179

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
               + GL+      T +VD+  + G++  A       + E +   W A++    +H
Sbjct: 180 NQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRK-IKEKNILSWSAMITGYGMH 235


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/522 (44%), Positives = 327/522 (62%), Gaps = 10/522 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+        V + A+ISGY+      EA+ +F ++ E  +  +S T++ +L  C   
Sbjct: 169 VFDDIPDKN--VVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQL 226

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  G   H   ++ G+  +  VG  L+ MY KCG+++  R +FD +PEK +++W AMI
Sbjct: 227 GDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMI 286

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GYA NGL    ++L+ +M+   V PD  T VGVLS+CA LGA  +G  V   +  N F 
Sbjct: 287 QGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFL 346

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            NP L  ALI++YA+CG++ +A  +F GM  K  V W AII G  ++G+ +++  LF ++
Sbjct: 347 YNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQV 406

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            K GI+PDG  F+ +L  C+HAGL D+G  YF  M   + L P  EHY CMVDLLGRAG 
Sbjct: 407 EKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGL 466

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L+EA +LI +M +E +  VWGALLGAC+IH++ +LAELA  ++I+LEP N+G YVLLSNI
Sbjct: 467 LDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNI 526

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           YS     D   +VR+ M E+R++K PG S++E+ G VH F+VGD+ H  + +IY  LD+L
Sbjct: 527 YSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDEL 586

Query: 421 ENLVQEHDGTKRSD------QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLR 474
              ++       +D      ++  +EH      HSEKLAIAFG+I+ +P   I V+KNLR
Sbjct: 587 TKKMKVAGYVPTTDFVLFDIEEEEKEHF--LGCHSEKLAIAFGLISATPTAVIRVVKNLR 644

Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +CGDCH+ IKL+S I  R+  VRD  RFH F+ G CSC DYW
Sbjct: 645 VCGDCHMAIKLISSITGREITVRDNNRFHCFREGSCSCNDYW 686



 Score =  221 bits (562), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 116/332 (34%), Positives = 189/332 (56%), Gaps = 2/332 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N +I G V N    +A+  +G MR +G   N+ T   +L  C     L LG+  H + V
Sbjct: 80  WNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVV 139

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K G D D  V   L+ +Y KCG ++   K+FD +P+K +++W A+ISGY   G     ++
Sbjct: 140 KGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAID 199

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           ++R +  + + PD+ T V VLS+C  LG  + G  + + I   G   N F+  +L++MYA
Sbjct: 200 MFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYA 259

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CGN++KAR++FDGMP K +VSW A+I GY ++G  + A+ LF +M +  ++PD    V 
Sbjct: 260 KCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVG 319

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VLSAC+  G  + G E+  G+ ++      P   T ++DL  + G ++ A E+ + M  E
Sbjct: 320 VLSACARLGALELG-EWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGM-KE 377

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
            D  VW A++    ++  V+++   FG+V KL
Sbjct: 378 KDRVVWNAIISGLAMNGYVKISFGLFGQVEKL 409



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 84/254 (33%), Positives = 130/254 (51%), Gaps = 10/254 (3%)

Query: 75  KFGLDLDFSVGNCLMTMYVKCG----SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
           +FGL  D    N L+ M ++C       +Y R LF Q+ +  +  WN MI G   N    
Sbjct: 39  RFGLCHD----NYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFD 94

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             +E Y  M+S G  P+  TF  VL +CA L    +G+++   +   GF  + F+  +L+
Sbjct: 95  DAIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLV 154

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
            +YA+CG L+ A  +FD +P K VVSWTAII GY   G    A+ +F  +L+  + PD  
Sbjct: 155 CLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSF 214

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
             V VLSAC+  G  + G E+ +    + G+       T +VD+  + G + +A  + + 
Sbjct: 215 TIVRVLSACTQLGDLNSG-EWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDG 273

Query: 311 MLVEPDGAVWGALL 324
           M  E D   WGA++
Sbjct: 274 M-PEKDIVSWGAMI 286


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/507 (42%), Positives = 330/507 (65%), Gaps = 13/507 (2%)

Query: 21  GYVLNSLVSEAVSLFGKM--REQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGL 78
           GYV N+LV  ++ LF  M   +    ++    L             +    H +  K G 
Sbjct: 170 GYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGF 229

Query: 79  DLDFSVGNCLMTMYVKCGSVDY--GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY 136
           + +  V N ++  Y K GS D    RK+FD + E+ +++WN+MI+ YAQNG++   + LY
Sbjct: 230 ERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLY 288

Query: 137 REMKSLG--VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
            +M ++G  +  +AV    VL +CAH GA   G  +  Q+   G   N ++  ++++MY+
Sbjct: 289 SKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYS 348

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG ++ A   F  +  K ++SW+A+I GYG+HG G+ A+++F EM +SG+RP+   F+S
Sbjct: 349 KCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFIS 408

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VL+ACSHAGL D+G  ++  MK ++G++ G EHY CMVDLLGRAG L+EA  LI+ M V+
Sbjct: 409 VLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVK 468

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
           PD A+WGALL AC+IHKNVELAE++  ++ +L+  N+GYYVLLSNIY+EAR    + R+R
Sbjct: 469 PDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIR 528

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE-----HDG 429
           ++++ RR++K PGYS  ELKG+++LF VGD++H Q +EIY  L+KL   +QE     + G
Sbjct: 529 LLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTG 588

Query: 430 TKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKI 489
           +   D  + EE  +   +HSEKLA+AF ++N+ P + I ++KNLR+C DCH  +K ++KI
Sbjct: 589 SVLHDL-DEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKI 647

Query: 490 VDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +R+ I+RD  RFHHFK G CSC+DYW
Sbjct: 648 TEREIIIRDLQRFHHFKDGLCSCRDYW 674


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 220/508 (43%), Positives = 326/508 (64%), Gaps = 4/508 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +NALISGY       +AVSLF KM  + ++ N  T+  +L        + +    H I
Sbjct: 351 IAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTI 410

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G+  DF V N L+  Y KC  +D   K+F++   + L+ + +MI+ Y+Q G     
Sbjct: 411 SIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEA 470

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+LY +M+   + PD      +L++CA+L A+  G ++       GF  + F +N+L+NM
Sbjct: 471 LKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNM 530

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG+++ A   F  +P + +VSW+A+IGGY  HGHG+ A++LF++ML+ G+ P+    
Sbjct: 531 YAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITL 590

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           VSVL AC+HAGL ++G +YF  M+  +G++P  EHY CM+DLLGR+G+LNEA+EL+ S+ 
Sbjct: 591 VSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIP 650

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            E DG VWGALLGA +IHKN+EL + A   +  LEP  +G +VLL+NIY+ A   + + +
Sbjct: 651 FEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWENVAK 710

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE--HDGT 430
           VR  M++ ++KK+PG S++E+K +V+ F+VGDR+H ++ EIY  LD+L +L+ +  +   
Sbjct: 711 VRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSHSRSDEIYAKLDQLGDLLSKAGYSSI 770

Query: 431 KRSDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
              D  N ++   +  +  HSEKLA+AFG+I T PG  I V KNLRIC DCH F K V K
Sbjct: 771 VEIDIHNVDKSEKEKLLYHHSEKLAVAFGLIATPPGGPIRVKKNLRICVDCHTFFKFVCK 830

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           IV R+ IVRD  RFHHFK G CSC DYW
Sbjct: 831 IVSREIIVRDINRFHHFKDGSCSCGDYW 858



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 161/313 (51%), Gaps = 2/313 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +++L+SGYV N  V EA+ +F +M   GV+ N  T   +L  C     L +G   H 
Sbjct: 47  VVSWSSLLSGYVQNGFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHG 106

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + V  G + D  V N L+ MY KCG +D  R+LF  + E+ +++WNA+ S Y Q+ L   
Sbjct: 107 MAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGE 166

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            + L++EM   G+ P+  +   +L++CA L    +G ++   +   G   + F  NAL++
Sbjct: 167 AVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVD 226

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY++ G ++ A A+F  +    VVSW AII G  +H   ++A+ L DEM  SG RP+   
Sbjct: 227 MYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFT 286

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
             S L AC+  G  + G +    +  K            +VD+  +   +++A    +SM
Sbjct: 287 LSSALKACAAMGFKELGRQLHSSLI-KMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSM 345

Query: 312 LVEPDGAVWGALL 324
             + D   W AL+
Sbjct: 346 -PKKDIIAWNALI 357



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 94/271 (34%), Positives = 145/271 (53%), Gaps = 4/271 (1%)

Query: 67  MCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQN 126
           M  H   +KFG   D S+ N L+T+Y KC    Y RKL D+  E  +++W++++SGY QN
Sbjct: 1   MELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN 60

Query: 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
           G     L ++ EM  LGV  +  TF  VL +C+     ++G +V       GF S+ F+ 
Sbjct: 61  GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVA 120

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           N L+ MYA+CG L  +R +F G+  + VVSW A+   Y        AV LF EM++SGI 
Sbjct: 121 NTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIM 180

Query: 247 PDGTAFVSVLSACSHAGLTDKGL-EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
           P+  +   +L+AC  AGL +  L    +G+  K GL         +VD+  +AG++  A+
Sbjct: 181 PNEFSISIILNAC--AGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAV 238

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELA 336
            + +  +  PD   W A++  C +H   +LA
Sbjct: 239 AVFQD-IAHPDVVSWNAIIAGCVLHDCNDLA 268



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 142/298 (47%), Gaps = 1/298 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +NAL S YV + L  EAV LF +M   G+  N  ++  +L  C       LG   H 
Sbjct: 148 VVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHG 207

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + +K GLDLD    N L+ MY K G ++    +F  +    +++WNA+I+G   +     
Sbjct: 208 LMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDL 267

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L L  EMK  G  P+  T    L +CA +G   +G ++   +      S+ F    L++
Sbjct: 268 ALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVD 327

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY++C  +  AR  +D MP+K +++W A+I GY   G    AV LF +M    I  + T 
Sbjct: 328 MYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTT 387

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
             +VL + +      K  +  + +  K G+         ++D  G+   ++EA ++ E
Sbjct: 388 LSTVLKSVASLQAI-KVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFE 444



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 168/336 (50%), Gaps = 6/336 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +NA+I+G VL+     A+ L  +M+  G   N  T+   L  C   G+  LG   H 
Sbjct: 249 VVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHS 308

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K     D      L+ MY KC  +D  R+ +D +P+K +I WNA+ISGY+Q G    
Sbjct: 309 SLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLD 368

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            + L+ +M S  +  +  T   VL S A L A  V  ++      +G  S+ ++ N+L++
Sbjct: 369 AVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLD 428

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
            Y +C ++ +A  IF+    + +V++T++I  Y  +G GE A++L+ +M  + I+PD   
Sbjct: 429 TYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFI 488

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
             S+L+AC++    ++G +  +    K+G          +V++  + G + +A      +
Sbjct: 489 CSSLLNACANLSAYEQGKQ-LHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEI 547

Query: 312 LVEPDGAV--WGALLGACKIHKNVELAELAFGKVIK 345
              P+  +  W A++G    H + + A   F ++++
Sbjct: 548 ---PNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLR 580


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/510 (44%), Positives = 318/510 (62%), Gaps = 5/510 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T  +++LI+     S   E++  + +M    +  ++ T   ++    D     +G   HC
Sbjct: 83  TFLFHSLITLTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHC 142

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                G  LD  V   L++ Y K G V   RK+FD++PEK ++ WN+MISGY QNG    
Sbjct: 143 HVYICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKE 202

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            +EL+  M+ LGV PD+ TFV +LS+CA +GA  +G  V + I  N F  N  L  AL+N
Sbjct: 203 AVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMN 262

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY+RCGN+ KAR +FD M  K +V+WTA+I GYG+HGHG  A++LF+EM   G RP+   
Sbjct: 263 MYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVT 322

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           FV+VLSAC+HAGL D+G + F  MK +YGL P  EH  CMVD+LGRAG LNEA + I++ 
Sbjct: 323 FVAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNT 382

Query: 312 LV-EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
              EP  AVW A+LGACK+HKN +L       ++ +EP N G+YV+LSNIY+ A  +D +
Sbjct: 383 SPKEPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSIEPENPGHYVMLSNIYALAGRMDRV 442

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
            ++R +M   RLKK+ GYS +++  +V+LF +GD++H +T +IY  LD+L +  +E    
Sbjct: 443 EKIRNIMIRNRLKKEVGYSTIDVDHKVYLFSMGDKSHPKTNQIYLYLDELMSRCREAGYI 502

Query: 431 KRSDQ----KNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
             S+        EE       HSEKLAIAFG++ T  G  I ++KNLR+C DCH  IK +
Sbjct: 503 PASESVMHEVEEEEREYALRYHSEKLAIAFGLLKTGSGVAIRIVKNLRMCEDCHTAIKYI 562

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           S I +R+  VRD  RFHHFK G CSC+DYW
Sbjct: 563 SIIANREINVRDRLRFHHFKDGSCSCQDYW 592



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 141/273 (51%), Gaps = 12/273 (4%)

Query: 92  YVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTF 151
           Y     + Y R+LF  +P+     ++++I+  ++       L  YR M    +     TF
Sbjct: 62  YAAASPISYTRRLFFSIPKPDTFLFHSLITLTSKFSFPQESLLCYRRMLLANISSSNYTF 121

Query: 152 VGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR 211
             V+ S A L A S+G  +   +   G+G + ++  AL++ YA+ G++  AR +FD MP 
Sbjct: 122 SAVIKSSADLTAFSIGETIHCHVYICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMPE 181

Query: 212 KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL-E 270
           KTVV+W ++I GY  +G G+ AV+LF  M   G++PD + FVS+LSAC+  G    G   
Sbjct: 182 KTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWV 241

Query: 271 YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           + Y  +N + L       T ++++  R G +++A E+ +SM  E +   W A++    +H
Sbjct: 242 HEYIARNCFDLNVVLG--TALMNMYSRCGNVSKAREVFDSM-EEKNIVAWTAMISGYGMH 298

Query: 331 ----KNVEL-AELAFGKVIKLEPMNTGYYVLLS 358
               + +EL  E++F       P N  +  +LS
Sbjct: 299 GHGSQAIELFNEMSFDGP---RPNNVTFVAVLS 328


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 219/520 (42%), Positives = 328/520 (63%), Gaps = 6/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+ ++     + + A+I G   +   +EA++++ +M++ GVE N VT   +L  C  P
Sbjct: 385 VFDKMVRKD--VISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSP 442

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H   V+ GL  D  VGN L+ MY  CGSV   R++FD++ ++ ++ +NAMI
Sbjct: 443 AALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMI 502

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GYA + L    L+L+  ++  G+ PD VT++ +L++CA+ G+     E+   ++  GF 
Sbjct: 503 GGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFF 562

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S+  + NAL++ YA+CG+   A  +F+ M ++ V+SW AIIGG   HG G+ A+QLF+ M
Sbjct: 563 SDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERM 622

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
              G++PD   FVS+LSACSHAGL ++G  YF  M   + + P  EHY CMVDLLGRAGQ
Sbjct: 623 KMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQ 682

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L+EA  LI++M  + +  +WGALLGAC+IH NV +AE A    +KL+  N   YV LS++
Sbjct: 683 LDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHM 742

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+ A   D   ++R +M +R + K+PG S++++  ++H F+  DR+H Q+ +IY  LD+L
Sbjct: 743 YAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHYFVAEDRSHPQSEKIYAELDRL 802

Query: 421 ENLVQE--HDGTKRSDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
            + ++   +    RS   + +E   +  V  HSE+LAIA+G+I+T PGT I + KNLR+C
Sbjct: 803 THAMKMKGYVPDTRSVMHDVDEGEKENAVCHHSERLAIAYGLISTPPGTRIHIFKNLRVC 862

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DCH   K +SKIVDR+ I RD  RFHHFK G CSC DYW
Sbjct: 863 PDCHTATKFISKIVDREIIARDVNRFHHFKDGVCSCGDYW 902



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 174/318 (54%), Gaps = 2/318 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N +I G        EA  ++ +M+ +GV  N +T + LL  CV+   L  G   H  
Sbjct: 294 IAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSR 353

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K G   D  V N L++MY +CGS+   R +FD++  K +I+W AMI G A++G     
Sbjct: 354 VAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEA 413

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L +Y+EM+  GV P+ VT+  +L++C+   A   G  + QQ+   G  ++  + N L+NM
Sbjct: 414 LTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNM 473

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y+ CG++K AR +FD M ++ +V++ A+IGGY  H  G+ A++LFD + + G++PD   +
Sbjct: 474 YSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTY 533

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +++L+AC+++G  +   E  + +  K G          +V    + G  ++A  + E M 
Sbjct: 534 INMLNACANSGSLEWARE-IHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKM- 591

Query: 313 VEPDGAVWGALLGACKIH 330
            + +   W A++G    H
Sbjct: 592 TKRNVISWNAIIGGSAQH 609



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 116/381 (30%), Positives = 198/381 (51%), Gaps = 7/381 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+  K +   V +   I GY        A  +F KM ++GV  N +T + +L     P
Sbjct: 183 VFDKMEKKS--VVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSP 240

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H   +  G + D +VG  L+ MY KCGS    R++F+++  + LI WN MI
Sbjct: 241 AALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMI 300

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            G A+ G      E+Y +M+  GV P+ +T+V +L++C +  A   G E+  ++   GF 
Sbjct: 301 GGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFT 360

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S+  + NALI+MY+RCG++K AR +FD M RK V+SWTA+IGG    G G  A+ ++ EM
Sbjct: 361 SDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEM 420

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            ++G+ P+   + S+L+ACS     + G    +    + GL         +V++    G 
Sbjct: 421 QQAGVEPNRVTYTSILNACSSPAALEWG-RRIHQQVVEAGLATDAHVGNTLVNMYSMCGS 479

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
           + +A ++ + M ++ D   + A++G    H   + A   F ++ +  L+P    Y  +L 
Sbjct: 480 VKDARQVFDRM-IQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINML- 537

Query: 359 NIYSEARNLDGIMRVRMMMRE 379
           N  + + +L+    +  ++R+
Sbjct: 538 NACANSGSLEWAREIHTLVRK 558



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 168/311 (54%), Gaps = 2/311 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NA++ GY+    + +A+ L  +M++ G+  +  T++  L  C  PG L  G   H   +
Sbjct: 94  WNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAM 153

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           + GL  D  V NC++ MY KCGS++  R++FD++ +K +++W   I GYA  G +    E
Sbjct: 154 QAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFE 213

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           ++++M+  GV P+ +T++ VL++ +   A   G  V  +I   G  S+  +  AL+ MYA
Sbjct: 214 IFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYA 273

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG+ K  R +F+ +  + +++W  +IGG    G+ E A +++++M + G+ P+   +V 
Sbjct: 274 KCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVI 333

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           +L+AC ++     G E  +    K G          ++ +  R G + +A  L+   +V 
Sbjct: 334 LLNACVNSAALHWGKE-IHSRVAKAGFTSDIGVQNALISMYSRCGSIKDA-RLVFDKMVR 391

Query: 315 PDGAVWGALLG 325
            D   W A++G
Sbjct: 392 KDVISWTAMIG 402



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 169/332 (50%), Gaps = 6/332 (1%)

Query: 31  AVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90
           AV +   +++QG ++NS   + +L  C++   L  G   H   ++     D    N L+ 
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALIN 66

Query: 91  MYVKCGSVDYGRKLFDQVP--EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDA 148
           MY++CGS++  R+++ ++   E+ + +WNAM+ GY Q G     L+L R+M+  G+ PD 
Sbjct: 67  MYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126

Query: 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208
            T +  LSSC   GA   G E+  Q    G   +  + N ++NMYA+CG++++AR +FD 
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDK 186

Query: 209 MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
           M +K+VVSWT  IGGY   G  E A ++F +M + G+ P+   ++SVL+A S       G
Sbjct: 187 MEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWG 246

Query: 269 LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACK 328
                 + N  G +      T +V +  + G   +  ++ E  LV  D   W  ++G   
Sbjct: 247 KAVHSRILNA-GHESDTAVGTALVKMYAKCGSYKDCRQVFEK-LVNRDLIAWNTMIGGLA 304

Query: 329 IHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
                E A   + ++ +  + P    Y +LL+
Sbjct: 305 EGGYWEEASEVYNQMQREGVMPNKITYVILLN 336


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/511 (44%), Positives = 319/511 (62%), Gaps = 10/511 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++ +I G+V N         F ++   G + ++ ++  ++  C D   L +G   H  
Sbjct: 67  VSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHST 126

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K GL LD  V + L+ MY KCG +D  ++LFD++P+K L+T   MI+GYA+ G     
Sbjct: 127 VLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNES 186

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
             L+ +M+  G  PD V  V ++++CA LGA +    V   + A  +  +  L  A+I+M
Sbjct: 187 WVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDM 246

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG++  +R IFD M +K V+SW+A+IG YG HG G  A++LF  ML SGI P+   F
Sbjct: 247 YAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITF 306

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +S+L ACSHAGL D GL+ F  M   YG++P  +HYTCMVDLLGRAG+L++AL LIE+M 
Sbjct: 307 ISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENME 366

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           VE D  +W A LGAC+IH+ V+LAE A   ++ L+  N G+Y+LLSNIY+ A     + +
Sbjct: 367 VEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRWKDVAK 426

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           +R +M +RRLKK PGY+++E+   ++ F  GD +H ++ EIY M   L++L Q+ +    
Sbjct: 427 IRNLMAKRRLKKIPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEM---LKSLSQKLESAGY 483

Query: 433 SDQKNSEEHLNDTEV-------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
               NS  H  D EV       HSEKLAIAFG+I T  GT I + KNLR+CGDCH F KL
Sbjct: 484 VPDTNSVLHDVDEEVKLGILHAHSEKLAIAFGLIATPDGTPIRITKNLRVCGDCHSFCKL 543

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           VS I  R  IVRDA RFHHFK G CSC DYW
Sbjct: 544 VSAITQRDIIVRDANRFHHFKEGICSCGDYW 574



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 132/262 (50%), Gaps = 4/262 (1%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H      G+  D  V N L+ M  K   +     LF+++ E+  ++W+ MI G+ +NG  
Sbjct: 23  HAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKNGDY 82

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
               + +RE+   G  PD  +   V+ +C       +G  +   +  NG   + F+ + L
Sbjct: 83  ERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFVCSTL 142

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++MYA+CG +  A+ +FD MP+K +V+ T +I GY   G    +  LFD+M + G  PD 
Sbjct: 143 VDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFVPDK 202

Query: 250 TAFVSVLSACSHAGLTDKG-LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
            A V++++AC+  G  +K  L + Y    +Y L    E  T M+D+  + G ++ + E+ 
Sbjct: 203 VAMVTIVNACAKLGAMNKARLVHDYVCARRYSLD--VELGTAMIDMYAKCGSIDSSREIF 260

Query: 309 ESMLVEPDGAVWGALLGACKIH 330
           + M  + +   W A++GA   H
Sbjct: 261 DRM-EQKNVISWSAMIGAYGYH 281



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 10/168 (5%)

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF 206
           D   F+  L  C ++       +V  Q+   G   +  + N L+ M A+  +L  A  +F
Sbjct: 2   DPDFFISTLFKCRNIFQIK---QVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLF 58

Query: 207 DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA-GLT 265
           + M  +  VSW+ +IGG+  +G  E   Q F E++++G +PD  +   V+ AC    GL 
Sbjct: 59  NKMEERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLI 118

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTC--MVDLLGRAGQLNEALELIESM 311
              L +   +KN   L    +++ C  +VD+  + G ++ A +L + M
Sbjct: 119 MGRLIHSTVLKNGLHL----DNFVCSTLVDMYAKCGMIDNAKQLFDRM 162


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/512 (45%), Positives = 318/512 (62%), Gaps = 10/512 (1%)

Query: 12   TVCYNALISGYVLNSLVSEAVSLFGKMREQ---GVEINSVTMLCLLPICVDPGYLWLGMC 68
            +V ++ ++ G+   + V + ++ FG  RE    G   ++ T+  ++  C D   L +G  
Sbjct: 801  SVSWSVMVGGF---AKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRL 857

Query: 69   CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
             H I  KFGLDLD  V   L+ MY KC  ++  R LFD++ E+ L+TW  MI GYA+ G 
Sbjct: 858  IHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGN 917

Query: 129  ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
            A   L L+ +M+  GV PD V  V V+ +CA LGA      ++  IQ   F  +  L  A
Sbjct: 918  ANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTA 977

Query: 189  LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
            +I+M+A+CG ++ AR IFD M  K V+SW+A+I  YG HG G  A+ LF  ML+SGI P+
Sbjct: 978  MIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPN 1037

Query: 249  GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
                VS+L ACSHAGL ++GL +F  M   Y ++   +HYTC+VDLLGRAG+L+EAL+LI
Sbjct: 1038 KITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLI 1097

Query: 309  ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
             SM  E D  +WGA LGAC+ HK+V LAE A   +++L+P N G+Y+LLSNIY+ A   +
Sbjct: 1098 XSMTXEKDEGLWGAFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWE 1157

Query: 369  GIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML----DKLENLV 424
             + ++R +M +RRLKK PG++++E+  + H F VGD  H ++ EIY ML    +KLE + 
Sbjct: 1158 DVAKIRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVG 1217

Query: 425  QEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
               D        + E  +     HSEKLAIAFG+I T   T I ++KNLR+CGDCH F K
Sbjct: 1218 YVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCK 1277

Query: 485  LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            LVS I  R  IVRDA RFHHFK G CSC DYW
Sbjct: 1278 LVSAITGRVIIVRDANRFHHFKEGACSCGDYW 1309



 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/470 (42%), Positives = 286/470 (60%), Gaps = 10/470 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQ---GVEINSVTMLCLLPICVDPGYLWLGMC 68
           +V ++ ++ G+   + V + ++ FG  RE    G   ++ T+  ++  C D   L +G  
Sbjct: 125 SVSWSVMVGGF---AKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRL 181

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            H I  KFGLDLD  V   L+ MYVKC  ++  R LFD++ E+ L+TW  MI GYA+ G 
Sbjct: 182 IHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGK 241

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
           A   L L+ +M+  GV PD V  V V+ +CA LGA      ++  IQ   F  +  L  A
Sbjct: 242 ANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTA 301

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           +I+MYA+CG ++ AR IFD M  K V+SW+A+I  YG HG G  A+ LF  ML SG+ PD
Sbjct: 302 MIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPD 361

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
                S+L ACSHAGL ++GL +F  M   Y ++   +HYTC+VDLLGRAG+L+EAL+LI
Sbjct: 362 KITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLI 421

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
           +SM +E D  +WGA LGAC+ HK+V LAE A   +++L+  N G+YVLLSNIY+ A   +
Sbjct: 422 KSMTIEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWE 481

Query: 369 GIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ--- 425
            + ++R +M +RRLKK PG++++E+  + H F VGD  H ++ EIY ML  L N ++   
Sbjct: 482 DVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLSNKLELVG 541

Query: 426 -EHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLR 474
              D        + E  +     HSEKLAIAFG+I T   T I ++KNLR
Sbjct: 542 YVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLR 591



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 127/257 (49%), Gaps = 8/257 (3%)

Query: 77   GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY 136
            G+  +  V N L+  Y    ++D    LFD +  +  ++W+ M+ G+A+ G   +    +
Sbjct: 765  GMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTF 824

Query: 137  REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196
            RE+   G  PD  T   V+ +C  L    +G  +   +   G   + F+  AL++MY +C
Sbjct: 825  RELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKC 884

Query: 197  GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL 256
              ++ AR +FD M  + +V+WT +IGGY   G+   ++ LFD+M + G+ PD  A V+V+
Sbjct: 885  REIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVV 944

Query: 257  SACSHAGLTDKGL---EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
             AC+  G   K     +Y    K +  +  G    T M+D+  + G +  A E+ + M  
Sbjct: 945  FACAKLGAMHKARTIDDYIQRKKFQLDVILG----TAMIDMHAKCGCVESAREIFDRM-E 999

Query: 314  EPDGAVWGALLGACKIH 330
            E +   W A++ A   H
Sbjct: 1000 EKNVISWSAMIAAYGYH 1016



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 126/257 (49%), Gaps = 8/257 (3%)

Query: 77  GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY 136
           G+  +  V N L+  Y    ++D    LFD +  +  ++W+ M+ G+A+ G   +    +
Sbjct: 89  GMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTF 148

Query: 137 REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196
           RE+   G  PD  T   V+ +C  L    +G  +   +   G   + F+  AL++MY +C
Sbjct: 149 RELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKC 208

Query: 197 GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL 256
             ++ AR +FD M  + +V+WT +IGGY   G    ++ LF++M + G+ PD  A V+V+
Sbjct: 209 REIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVV 268

Query: 257 SACSHAGLTDKGL---EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
            AC+  G   K     +Y    K +  +  G    T M+D+  + G +  A E+ + M  
Sbjct: 269 FACAKLGAMHKARIIDDYIQRKKFQLDVILG----TAMIDMYAKCGCVESAREIFDRM-E 323

Query: 314 EPDGAVWGALLGACKIH 330
           E +   W A++ A   H
Sbjct: 324 EKNVISWSAMIAAYGYH 340



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 6/159 (3%)

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
           +V  Q   +G   N  + N L+  Y+    L  A  +FDGM  +  VSW+ ++GG+   G
Sbjct: 756 QVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVG 815

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY 288
                   F E+++ G RPD      V+ AC        G    + +  K+GL    +H+
Sbjct: 816 DYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMG-RLIHHIVYKFGLD--LDHF 872

Query: 289 TC--MVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
            C  +VD+ G+  ++ +A  L + M  E D   W  ++G
Sbjct: 873 VCAALVDMYGKCREIEDARFLFDKM-XERDLVTWTVMIG 910



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 9/177 (5%)

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
           ++  L +C +L   +   +V  Q   +G   N  + N LI  Y+    L  A  +FDGM 
Sbjct: 65  YISALVNCRNL---TQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMC 121

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270
            +  VSW+ ++GG+   G        F E+++ G RPD      V+ AC        G  
Sbjct: 122 VRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMG-R 180

Query: 271 YFYGMKNKYGLQPGPEHYTC--MVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
             + +  K+GL    +H+ C  +VD+  +  ++ +A  L + M  E D   W  ++G
Sbjct: 181 LIHHIVYKFGLD--LDHFVCAALVDMYVKCREIEDARFLFDKMQ-ERDLVTWTVMIG 234


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/521 (43%), Positives = 318/521 (61%), Gaps = 9/521 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD   + T   V +N+++ GYV N    +A+++F KM E+G++   VT++  L  C D 
Sbjct: 305 IFDGMDQKT--VVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADL 362

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  G   H    +  L  D SV N L++MY KC  VD    +F+ +  +  ++WNAMI
Sbjct: 363 GDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMI 422

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GYAQNG  +  L  + EMKSLG+ PD+ T V V+ + A L        +   I  +   
Sbjct: 423 LGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLD 482

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            N F+  AL++MY++CG +  AR +FD +  + V++W A+I GYG HG G  A+ LFD+M
Sbjct: 483 KNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKM 542

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            K  + P+   ++SV+SACSH+GL D+GL +F  MK  YGL+P  +HY  MVDLLGRAG+
Sbjct: 543 KKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGR 602

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           + EA + IE+M + P   V+GA+LGACKIHKN+E+ E A  K+ +L P   GY+VLL+NI
Sbjct: 603 IKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANI 662

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+       +  VR  M ++ LKK PG S VEL+  VH F  G   H Q+  IY  L++L
Sbjct: 663 YASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEEL 722

Query: 421 ENLVQEHDGTKRSD-----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRI 475
              ++       ++     + + +E L ++  HSEKLAIAFG++NTSPGT I V KNLR+
Sbjct: 723 VYEIKAAGYVPDTNLILDVEDDVQEQLLNS--HSEKLAIAFGLLNTSPGTTIHVRKNLRV 780

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           CGDCH   K +S +  R+ IVRD  RFHHFK+G CSC DYW
Sbjct: 781 CGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 110/388 (28%), Positives = 197/388 (50%), Gaps = 6/388 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +I+G+  N    +A+ L  +M+++G   +S+T++ +LP   D G L +G   H  
Sbjct: 214 VSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGY 273

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ G     ++   L  MY KCGSV+  R +FD + +K +++WN+M+ GY QNG     
Sbjct: 274 AIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKA 333

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + ++ +M   G+ P  VT +  L +CA LG    G  V + +     GS+  + N+LI+M
Sbjct: 334 IAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISM 393

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++C  +  A  IF+ +  +T VSW A+I GY  +G    A+  F EM   G++PD    
Sbjct: 394 YSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTM 453

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           VSV+ A +   +T +  ++ +G+  +  L       T +VD+  + G ++ A +L + M+
Sbjct: 454 VSVIPALAELSVT-RHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFD-MI 511

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDGI 370
            +     W A++     H     A   F K+ K  +EP +  Y  ++S         +G+
Sbjct: 512 SDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGL 571

Query: 371 MRVRMMMRERRLKKDPGY--SYVELKGR 396
              + M ++  L+    +  + V+L GR
Sbjct: 572 RHFKSMKQDYGLEPSMDHYGAMVDLLGR 599



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 89/258 (34%), Positives = 141/258 (54%)

Query: 11  LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
           L   Y+ ++ GY  NS +  A++   +MR   V+        LL +C D   L  G   H
Sbjct: 111 LDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIH 170

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
              +      +      ++ MY KC  +D   K+FD++PE+ L++WN +I+G++QNG A 
Sbjct: 171 GQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAK 230

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             LEL   M+  G  PD++T V VL + A +G   VG  +       GF     ++ AL 
Sbjct: 231 KALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALA 290

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MY++CG+++ AR IFDGM +KTVVSW +++ GY  +G  E A+ +F++ML+ GI P G 
Sbjct: 291 DMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGV 350

Query: 251 AFVSVLSACSHAGLTDKG 268
             +  L AC+  G  ++G
Sbjct: 351 TIMEALHACADLGDLERG 368



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 1/240 (0%)

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + +K GL  +      L++++ K GS++   ++F+ + +K    ++ M+ GYA+N     
Sbjct: 71  LVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLET 130

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L     M+   V P    F  +L  C        G E+  Q+  N F +N F    ++N
Sbjct: 131 ALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVN 190

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+C  +  A  +FD MP + +VSW  II G+  +G  + A++L   M   G RPD   
Sbjct: 191 MYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSIT 250

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            V+VL A +  GL   G +  +G   + G        T + D+  + G +  A  + + M
Sbjct: 251 LVTVLPAAADVGLLMVG-KSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGM 309


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/520 (44%), Positives = 325/520 (62%), Gaps = 27/520 (5%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V +NA+I GY  N   +EA++LF +M  +GV++  V++L  L  C + G+L  G   H 
Sbjct: 393 SVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHE 452

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + V+ GL+ + +V N L+TMY KC   D   ++FD++  K  ++WNAMI G  QNG +  
Sbjct: 453 LLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSED 512

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLG---------AHSVGLEVEQQIQANGFGSN 182
            + L+  M+   V PD+ T V ++ + A +           +S+ L ++Q +        
Sbjct: 513 AVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDV-------- 564

Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
            ++  ALI+MYA+CG +  AR++F+    + V++W A+I GYG HG G+VAV+LF+EM  
Sbjct: 565 -YVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKS 623

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
           SG  P+ T F+SVLSACSHAGL D+G EYF  MK  YGL+PG EHY  MVDLLGRAG+L+
Sbjct: 624 SGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLH 683

Query: 303 EALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362
           EA   I+ M +EP  +V+GA+LGACK+HKNVELAE +  ++ +LEP    Y+VLL+NIY+
Sbjct: 684 EAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYA 743

Query: 363 EARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL-E 421
            A     + RVR  M ++ L+K PG+S V+LK  +H F  G  NH Q  +IY  L KL E
Sbjct: 744 NASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARLAKLIE 803

Query: 422 NL-----VQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
            +     V + D     +     + LN    HSEKLAIA+G+I T+PGT I + KNLR+C
Sbjct: 804 EIKAVGYVPDTDSIHDVEDDVKAQLLN---THSEKLAIAYGLIRTAPGTTIQIKKNLRVC 860

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DCH   KL+S +  R+ I+RD  RFHHFK G CSC DYW
Sbjct: 861 KDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 900



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 157/300 (52%), Gaps = 4/300 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +NAL++GY  N L   AV +  +M+E+ G   ++VT++ +LP C D   L      H 
Sbjct: 292 VAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACREVHA 351

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             V+ G D   +V   ++ +Y KCG+VD  RK+FD + ++  ++WNAMI GYA+NG AT 
Sbjct: 352 FAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATE 411

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L L++ M   GV    V+ +  L +C  LG    G  V + +   G  SN  + NALI 
Sbjct: 412 ALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALIT 471

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY +C     A  +FD +  KT VSW A+I G   +G  E AV+LF  M    ++PD   
Sbjct: 472 MYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFT 531

Query: 252 FVSVLSACSHAGLTDK-GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            VS++ A   A ++D     + +G   +  L       T ++D+  + G+++ A  L  S
Sbjct: 532 LVSIIPAL--ADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNS 589



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 148/313 (47%), Gaps = 4/313 (1%)

Query: 49  TMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV 108
           T   LL +C     L  G   H      GL  +      L  MY KC      R++FD++
Sbjct: 227 TFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRM 286

Query: 109 PEKGLITWNAMISGYAQNGLATHVLELYREMKSL-GVCPDAVTFVGVLSSCAHLGAHSVG 167
           P +  + WNA+++GYA+NGLA   + +   M+   G  PDAVT V VL +CA   A    
Sbjct: 287 PARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGAC 346

Query: 168 LEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH 227
            EV       GF     ++ A++++Y +CG +  AR +FDGM  +  VSW A+I GY  +
Sbjct: 347 REVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAEN 406

Query: 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH 287
           G    A+ LF  M+  G+     + ++ L AC   G  D+G    + +  + GL+     
Sbjct: 407 GDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEG-RRVHELLVRIGLESNVNV 465

Query: 288 YTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE 347
              ++ +  +  + + A ++ + +  +     W A++  C  + + E A   F + ++LE
Sbjct: 466 MNALITMYCKCKRTDLAAQVFDELGYKTR-VSWNAMILGCTQNGSSEDAVRLFSR-MQLE 523

Query: 348 PMNTGYYVLLSNI 360
            +    + L+S I
Sbjct: 524 NVKPDSFTLVSII 536



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 83/183 (45%), Gaps = 3/183 (1%)

Query: 143 GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202
           G  P   TF  +L  CA     + G  V  Q+ A G         AL NMYA+C     A
Sbjct: 220 GSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDA 279

Query: 203 RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML-KSGIRPDGTAFVSVLSACSH 261
           R +FD MP +  V+W A++ GY  +G  E AV +   M  + G RPD    VSVL AC+ 
Sbjct: 280 RRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACAD 339

Query: 262 AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWG 321
           A       E  +    + G        T ++D+  + G ++ A ++ + M  + +   W 
Sbjct: 340 AQALGACRE-VHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQ-DRNSVSWN 397

Query: 322 ALL 324
           A++
Sbjct: 398 AMI 400


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/508 (42%), Positives = 321/508 (63%), Gaps = 4/508 (0%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
            + + A+I G   + L +EA+++F  M++ G++ N VT   +L  C  P  L  G   H  
Sbjct: 513  ISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQ 572

Query: 73   CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             ++ GL  D  V N L+ MY  CGSV   R++FD++ ++ ++ +NAMI GYA + L    
Sbjct: 573  VIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEA 632

Query: 133  LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            L+L+  ++  G+ PD VT++ +L++CA+ G+     E+   +  +G+ S+  L NAL++ 
Sbjct: 633  LKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVST 692

Query: 193  YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
            YA+CG+   A  +FD M ++ V+SW AIIGG   HG G+  +QLF+ M   GI+PD   F
Sbjct: 693  YAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTF 752

Query: 253  VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            VS+LSACSHAGL ++G  YF  M   +G+ P  EHY CMVDLLGRAGQL+E   LI++M 
Sbjct: 753  VSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMP 812

Query: 313  VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
             + +  +WGALLGAC+IH NV +AE A    +KL+P N   YV LS++Y+ A   D   +
Sbjct: 813  FQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAK 872

Query: 373  VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENL--VQEHDGT 430
            +R +M +R + K+PG S++E+  ++H F+  DR+H ++ +IY  LDKL +   ++ +   
Sbjct: 873  LRKLMEQRGVTKEPGRSWIEVGDKLHYFVAEDRSHPESEKIYAELDKLTHAMKMEGYVPD 932

Query: 431  KRSDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
             RS   + +E   +  V  HSE+LAIA+G+I+T PGT I + KNLR+C DCH   K ++K
Sbjct: 933  TRSVMHDVDEGEKENAVCHHSERLAIAYGLISTLPGTPIRIFKNLRVCPDCHTATKFITK 992

Query: 489  IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            IVDR+ + RD  RFHHFK G CSC DYW
Sbjct: 993  IVDREIVARDVNRFHHFKDGVCSCGDYW 1020



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 181/318 (56%), Gaps = 2/318 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N +I G        EA  ++ +M+ +G+  N +T + LL  CV+P  L  G   H  
Sbjct: 412 IAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSR 471

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK G   D SV N L++MY +CGS+   R LF+++  K +I+W AMI G A++GL    
Sbjct: 472 VVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEA 531

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L ++++M+  G+ P+ VT+  +L++C+   A   G  + QQ+   G  ++  + N L+NM
Sbjct: 532 LAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNM 591

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y+ CG++K AR +FD M ++ +V++ A+IGGY  H  G+ A++LFD + + G++PD   +
Sbjct: 592 YSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTY 651

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +++L+AC+++G  +   E  + +  K G          +V    + G  ++AL + + M+
Sbjct: 652 INMLNACANSGSLEWAKE-IHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMM 710

Query: 313 VEPDGAVWGALLGACKIH 330
            + +   W A++G C  H
Sbjct: 711 -KRNVISWNAIIGGCAQH 727



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/330 (31%), Positives = 176/330 (53%), Gaps = 4/330 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+    T   V +  +I GY        A  +F KM+++GV  N +T + +L     P
Sbjct: 301 VFDK--METKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGP 358

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H   +  G + D +VG  L+ MY KCGS    R++F+++  + LI WN MI
Sbjct: 359 AALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMI 418

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            G A+ G      E+Y +M+  G+ P+ +T+V +L++C +  A   G E+  ++  +GF 
Sbjct: 419 GGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFM 478

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            +  + NALI+MYARCG++K AR +F+ M RK ++SWTA+IGG    G G  A+ +F +M
Sbjct: 479 FDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDM 538

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            ++G++P+   + S+L+ACS     D G    +    + GL         +V++    G 
Sbjct: 539 QQAGLKPNRVTYTSILNACSSPAALDWG-RRIHQQVIEAGLATDAHVANTLVNMYSMCGS 597

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIH 330
           + +A ++ + M  + D   + A++G    H
Sbjct: 598 VKDARQVFDRM-TQRDIVAYNAMIGGYAAH 626



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 162/311 (52%), Gaps = 2/311 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NA++ GYV    + EA+ L  +M++ G+ +   T + LL  C  P  L  G   H   +
Sbjct: 212 WNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAM 271

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K  L  D +V NC++ MY KCGS+   R++FD++  K +++W  +I GYA  G +    E
Sbjct: 272 KARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFE 331

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           ++++M+  GV P+ +T++ VL++ +   A   G  V   I   G  S+  +  AL+ MYA
Sbjct: 332 IFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYA 391

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG+ K  R +F+ +  + +++W  +IGG    G+ E A +++ +M + G+ P+   +V 
Sbjct: 392 KCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVI 451

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           +L+AC +      G E  +    K G          ++ +  R G + +A  L   M V 
Sbjct: 452 LLNACVNPTALHWGRE-IHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKM-VR 509

Query: 315 PDGAVWGALLG 325
            D   W A++G
Sbjct: 510 KDIISWTAMIG 520



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 169/333 (50%), Gaps = 6/333 (1%)

Query: 30  EAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLM 89
            A+ +   +++QG  +NS   + +L  C++   L  G   H   ++    LD    N L+
Sbjct: 124 RAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALI 183

Query: 90  TMYVKCGSVDYGRKLFDQV--PEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
            MY++CGS++  R++++++   E+ + +WNAM+ GY Q G     L+L REM+  G+   
Sbjct: 184 NMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALG 243

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
             T + +LSSC    A   G E+  +        +  + N ++NMYA+CG++ +AR +FD
Sbjct: 244 RATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFD 303

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            M  K+VVSWT IIGGY   GH E+A ++F +M + G+ P+   +++VL+A S       
Sbjct: 304 KMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKW 363

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           G      + N  G +      T +V +  + G   +  ++ E  LV  D   W  ++G  
Sbjct: 364 GKTVHSHILNA-GHESDLAVGTALVKMYAKCGSYKDCRQVFEK-LVNRDLIAWNTMIGGL 421

Query: 328 KIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
               N E A   + ++ +  + P    Y +LL+
Sbjct: 422 AEGGNWEEASEIYHQMQREGMMPNKITYVILLN 454


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/527 (42%), Positives = 331/527 (62%), Gaps = 16/527 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD    S+   V +N++ISG+     V+ AV +F  MR+ GV  + +T+L L       
Sbjct: 227 VFDG--MSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQC 284

Query: 61  GYLWLGMCCHCICVKFGLDL-DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
           G +  G   HC  V+ G D+ D   GN ++ MY K   ++  +++FD +P +  ++WN +
Sbjct: 285 GDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTL 344

Query: 120 ISGYAQNGLATHVLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           I+GY QNGLA+  + +Y  M K  G+ P   TFV VL + +HLGA   G  +       G
Sbjct: 345 ITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTG 404

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
              + ++   +I++YA+CG L +A  +F+  PR++   W A+I G G+HGHG  A+ LF 
Sbjct: 405 LNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFS 464

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
           +M + GI PD   FVS+L+ACSHAGL D+G  +F  M+  YG++P  +HY CMVD+ GRA
Sbjct: 465 QMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRA 524

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           GQL++A + I +M ++PD A+WGALLGAC+IH NVE+ ++A   + +L+P N GYYVL+S
Sbjct: 525 GQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMS 584

Query: 359 NIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRN--HHQTVEIYR- 415
           N+Y++    DG+  VR ++R + L+K PG+S +E+K  V++F  G++   H Q  EI R 
Sbjct: 585 NMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQMNIHPQHEEIQRE 644

Query: 416 ---MLDKLENLVQEHDGT---KRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVV 469
              +L K+ +L    D +   +  ++   E+ LN+   HSE+LAIAFGIINT P T + +
Sbjct: 645 LLDLLAKIRSLGYVPDYSFVLQDVEEDEKEQILNN---HSERLAIAFGIINTPPRTPLHI 701

Query: 470 MKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            KNLR+CGDCH   K +SKI +R+ IVRD+ RFHHFK G+CSC D+W
Sbjct: 702 YKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGYCSCGDFW 748



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 117/369 (31%), Positives = 194/369 (52%), Gaps = 11/369 (2%)

Query: 14  CYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
            +NA++SG   N+  +EAV LFG+M  +GV  ++VT+  +LP+CV  G   L +  H   
Sbjct: 137 AWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYA 196

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           VK GLD +  V N ++ +Y K G ++  RK+FD +  + L+TWN++ISG+ Q G     +
Sbjct: 197 VKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAV 256

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL-NNALINM 192
           E++  M+  GV PD +T + + S+ A  G    G  V   +   G+     +  NA+++M
Sbjct: 257 EMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDM 316

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK-SGIRPDGTA 251
           YA+   ++ A+ +FD MP +  VSW  +I GY  +G    A+ ++D M K  G++P    
Sbjct: 317 YAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGT 376

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           FVSVL A SH G   +G    + +  K GL       TC++DL  + G+L+EA+ L E  
Sbjct: 377 FVSVLPAYSHLGALQQGTR-MHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQT 435

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLL-----SNIYSEA 364
                G  W A++    +H +   A   F ++ +  + P +  +  LL     + +  + 
Sbjct: 436 PRRSTGP-WNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQG 494

Query: 365 RNLDGIMRV 373
           RN   +M+ 
Sbjct: 495 RNFFNMMQT 503



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 120/256 (46%), Gaps = 2/256 (0%)

Query: 70  HCICVKFGL-DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
           H   ++ GL   D      L+  Y++ G V    + FD++  + +  WNAM+SG  +N  
Sbjct: 91  HACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNAR 150

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
           A   + L+  M   GV  DAVT   VL  C  LG  ++ L +      +G     F+ NA
Sbjct: 151 AAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNA 210

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           +I++Y + G L++ R +FDGM  + +V+W +II G+   G    AV++F  M  SG+ PD
Sbjct: 211 MIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPD 270

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
               +S+ SA +  G    G      M  +            +VD+  +  ++  A  + 
Sbjct: 271 VLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMF 330

Query: 309 ESMLVEPDGAVWGALL 324
           +SM V  D   W  L+
Sbjct: 331 DSMPVR-DAVSWNTLI 345


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 212/513 (41%), Positives = 320/513 (62%), Gaps = 5/513 (0%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           S    V +NA+I+ YV +     A++ F  + ++G++ NS T   +L +C     L LG 
Sbjct: 475 SKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGK 534

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
             H + +K GL+ D  V N L++M+V CG +   + LF+ +P++ L++WN +I+G+ Q+G
Sbjct: 535 WVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHG 594

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
                 + ++ M+  G+ PD +TF G+L++CA   A + G  +   I    F  +  +  
Sbjct: 595 KNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGT 654

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
            LI+MY +CG+++ A  +F  +P+K V SWT++I GY  HG G+ A++LF +M + G++P
Sbjct: 655 GLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKP 714

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           D   FV  LSAC+HAGL ++GL +F  MK ++ ++P  EHY CMVDL GRAG LNEA+E 
Sbjct: 715 DWITFVGALSACAHAGLIEEGLHHFQSMK-EFNIEPRMEHYGCMVDLFGRAGLLNEAVEF 773

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNL 367
           I  M VEPD  VWGALLGAC++H NVELAE A  K ++L+P + G +V+LSNIY+ A   
Sbjct: 774 IIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMW 833

Query: 368 DGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH 427
             + ++R +M +R + K PG S++E+ G+VH F   D+ H QT EI+  L++L   +++ 
Sbjct: 834 KEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQL 893

Query: 428 DGTKRSDQKNSEEHLNDTE----VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFI 483
                +     +   N+ E     HSE+LAI +G++ T P T IV+ KNLR+CGDCH   
Sbjct: 894 GYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLKTPPLTPIVISKNLRVCGDCHTAT 953

Query: 484 KLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K +SKI  RQ I RD+ RFHHFK G CSC D+W
Sbjct: 954 KFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 188/353 (53%), Gaps = 18/353 (5%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N L+ GYV + L  EA  L  +M +  V+ +  T + +L  C D   +  G   + + +
Sbjct: 179 WNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLIL 238

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K G D D  VG  L+ M++KCG +    K+FD +P + L+TW +MI+G A++G       
Sbjct: 239 KAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACN 298

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L++ M+  GV PD V FV +L +C H  A   G +V  +++  G+ +  ++  A+++MY 
Sbjct: 299 LFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYT 358

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG+++ A  +FD +  + VVSWTA+I G+  HG  + A   F++M++SGI P+   F+S
Sbjct: 359 KCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMS 418

Query: 255 VLSACSHAGLTDKG-------LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           +L ACS      +G       +E  YG  ++          T ++ +  + G L +A  +
Sbjct: 419 ILGACSSPSALKRGQQIQDHIIEAGYGSDDRV--------RTALLSMYAKCGSLKDAHRV 470

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
            E  + + +   W A++ A   H+  + A   F  ++K  ++P ++ +  +L+
Sbjct: 471 FEK-ISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILN 522



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 100/336 (29%), Positives = 175/336 (52%), Gaps = 4/336 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD     T   V + ++I+G   +    +A +LF +M E+GV+ + V  + LL  C  P
Sbjct: 268 VFDNL--PTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHP 325

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H    + G D +  VG  +++MY KCGS++   ++FD V  + +++W AMI
Sbjct: 326 EALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMI 385

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +G+AQ+G        + +M   G+ P+ VTF+ +L +C+   A   G +++  I   G+G
Sbjct: 386 AGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYG 445

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S+  +  AL++MYA+CG+LK A  +F+ + ++ VV+W A+I  Y  H   + A+  F  +
Sbjct: 446 SDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQAL 505

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           LK GI+P+ + F S+L+ C  +   + G ++ + +  K GL+        +V +    G 
Sbjct: 506 LKEGIKPNSSTFTSILNVCKSSDSLELG-KWVHFLIMKAGLESDLHVSNALVSMFVNCGD 564

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELA 336
           L  A  L   M  + D   W  ++     H   ++A
Sbjct: 565 LMSAKNLFNDM-PKRDLVSWNTIIAGFVQHGKNQVA 599



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 104/348 (29%), Positives = 170/348 (48%), Gaps = 33/348 (9%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+I+G+  +  + EA   F KM E G+E N VT + +L  C  P  L  G      
Sbjct: 379 VSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDH 438

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ G   D  V   L++MY KCGS+    ++F+++ ++ ++ WNAMI+ Y Q+    + 
Sbjct: 439 IIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNA 498

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L  ++ +   G+ P++ TF  +L+ C    +  +G  V   I   G  S+  ++NAL++M
Sbjct: 499 LATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSM 558

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           +  CG+L  A+ +F+ MP++ +VSW  II G+  HG  +VA   F  M +SGI+PD   F
Sbjct: 559 FVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITF 618

Query: 253 VSVLSACS-----------HAGLTDKGLEY-------FYGMKNKYG--------LQPGPE 286
             +L+AC+           HA +T+   +           M  K G            P+
Sbjct: 619 TGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPK 678

Query: 287 H----YTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGAC 327
                +T M+    + G+  EALEL   M    V+PD   +   L AC
Sbjct: 679 KNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSAC 726



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 104/345 (30%), Positives = 180/345 (52%), Gaps = 6/345 (1%)

Query: 16  NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVK 75
           NA+++        +EA+ +  ++    ++I   T   LL +C+    L  G   +    K
Sbjct: 79  NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138

Query: 76  FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLEL 135
            G+  D  + N L+ MY KCG+    +++FD + EK + +WN ++ GY Q+GL     +L
Sbjct: 139 SGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKL 198

Query: 136 YREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR 195
           + +M    V PD  TFV +L++CA       G E+   I   G+ ++ F+  ALINM+ +
Sbjct: 199 HEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIK 258

Query: 196 CGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSV 255
           CG++  A  +FD +P + +V+WT++I G   HG  + A  LF  M + G++PD  AFVS+
Sbjct: 259 CGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSL 318

Query: 256 LSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEP 315
           L AC+H    ++G +    MK + G        T ++ +  + G + +ALE+ +  LV+ 
Sbjct: 319 LRACNHPEALEQGKKVHARMK-EVGWDTEIYVGTAILSMYTKCGSMEDALEVFD--LVKG 375

Query: 316 DGAV-WGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLL 357
              V W A++     H  ++ A L F K+I+  +EP    +  +L
Sbjct: 376 RNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSIL 420


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/519 (42%), Positives = 319/519 (61%), Gaps = 5/519 (0%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD     T   V +N++I GYV N     A+ +F KM ++ VE+ +VT++  L  C D 
Sbjct: 333 IFDRMTGKT--VVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADL 390

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G +  G   H +  +  L  D SV N L++MY KC  VD   ++F+ +  K L++WNAMI
Sbjct: 391 GDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMI 450

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GYAQNG     ++ + +M+   + PD+ T V V+ + A L        +   +      
Sbjct: 451 LGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLD 510

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            N F+  AL++MYA+CG +  AR +FD M  + V +W A+I GYG HG G+ A++LF++M
Sbjct: 511 KNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKM 570

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            K  I+P+   F+ VLSACSH+GL ++G +YF  MK  YGL+P  +HY  MVDLLGRA +
Sbjct: 571 KKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANR 630

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           LNEA + I+ M +EP  +V+GA+LGAC+IHKNVEL E A  ++  L+P + GY+VLL+NI
Sbjct: 631 LNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANI 690

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+ A   D + RVR  M ++ ++K PG+S VEL+  VH F  G  +H Q  +IY  L+ L
Sbjct: 691 YATASMWDKVARVRTTMEKKGIQKTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLETL 750

Query: 421 ENLVQEHDGTKRSDQKNSEEHLNDTEV---HSEKLAIAFGIINTSPGTEIVVMKNLRICG 477
            N ++       ++  +  E +   ++   HSEKLAIAF ++NTSPGT I + KNLR+CG
Sbjct: 751 GNRIKAAGYMPDTNSVHDVEDVVKEQLLNSHSEKLAIAFSLLNTSPGTTIHLRKNLRVCG 810

Query: 478 DCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           DCH   K +S +  R+ IVRD  RFHHFK G CSC DYW
Sbjct: 811 DCHNATKYISLVTKREIIVRDMRRFHHFKDGTCSCGDYW 849



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 111/350 (31%), Positives = 182/350 (52%), Gaps = 8/350 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           VC+N +ISGY  N     A+ L  +M+E+G   +S+T++ +LP   D G L +G   H  
Sbjct: 242 VCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGY 301

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ G +   +V   L+ MY KCGSV   R +FD++  K +++WN+MI GY QNG     
Sbjct: 302 SMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAA 361

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           +E++++M    V    VT +G L +CA LG    G  V + +     GS+  + N+LI+M
Sbjct: 362 MEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISM 421

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++C  +  A  IF+ +  KT+VSW A+I GY  +G    A+  F +M    I+PD    
Sbjct: 422 YSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTM 481

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           VSV+ A +   +  +  ++ +G+  +  L       T +VD+  + G ++ A +L + M+
Sbjct: 482 VSVIPALAELSVLPQA-KWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFD-MM 539

Query: 313 VEPDGAVWGALLGACKIH----KNVELAELAFGKVIKLEPMNTGYYVLLS 358
            E     W A++     H      +EL E    +VIK  P    +  +LS
Sbjct: 540 DERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIK--PNEVTFLCVLS 587



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 93/297 (31%), Positives = 156/297 (52%), Gaps = 1/297 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           Y+ ++ GY  NS + +AVS F +MR  GV         LL +C D   L  G   HC  +
Sbjct: 143 YHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLI 202

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             G   +      ++ MY KC  V+   K+FD++PE+ L+ WN +ISGYAQNG     LE
Sbjct: 203 VNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALE 262

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L   M+  G  PD++T V +L + A +G+  +G  +       GF S   ++ AL++MY+
Sbjct: 263 LVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYS 322

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG++  AR IFD M  KTVVSW ++I GY  +G    A+++F +M+   +       + 
Sbjct: 323 KCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMG 382

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            L AC+  G  ++G  + + + ++  L         ++ +  +  +++ A E+ E++
Sbjct: 383 ALHACADLGDVEQG-RFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENL 438



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 116/240 (48%), Gaps = 1/240 (0%)

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + +K GL  +      L++++ K GS+    ++F  + +K    ++ M+ GYA+N     
Sbjct: 99  LIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDD 158

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            +  +  M+  GV P    F  +L  C        G E+  Q+  NGF SN F    ++N
Sbjct: 159 AVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVN 218

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+C  +++A  +FD MP + +V W  II GY  +G G+ A++L   M + G RPD   
Sbjct: 219 MYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSIT 278

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            VS+L A +  G    G    +G   + G +      T +VD+  + G +  A  + + M
Sbjct: 279 IVSILPAVADVGSLRIG-RSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRM 337


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/515 (42%), Positives = 332/515 (64%), Gaps = 19/515 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + ++ISGY  N L  EA+ +FG+MR++ V+ + + ++ +L    D   L  G   H  
Sbjct: 236 VSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGC 295

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK GL+ +  +   L  MY KCG V   R  FDQ+    ++ WNAMISGYA+NG     
Sbjct: 296 VVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEA 355

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + L++EM S  +  D++T    + +CA +G+  +   +   I    + ++ F+N ALI+M
Sbjct: 356 VGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDM 415

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           +A+CG++  AR +FD    K VV W+A+I GYG+HG G+ A+ LF  M ++G+ P+   F
Sbjct: 416 FAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTF 475

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           V +L+AC+H+GL ++G E F+ MK  YG++   +HY C+VDLLGR+G LNEA + I +M 
Sbjct: 476 VGLLTACNHSGLVEEGWELFHSMK-YYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMP 534

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           +EP  +VWGALLGACKI+++V L E A  ++  L+P NTG+YV LSN+Y+ +R  D + +
Sbjct: 535 IEPGVSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAK 594

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE------ 426
           VR++MRE+ L KD GYS +E+ G++  F VGD++H +  EI+  L+ LE  ++E      
Sbjct: 595 VRILMREKGLSKDLGYSLIEINGKLQAFRVGDKSHPRFKEIFEELESLERRLKEAGFIPH 654

Query: 427 -----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHL 481
                HD     +Q+  EE L +   HSE+LAIA+G+I+T+PGT + + KNLR C +CH 
Sbjct: 655 IESVLHD----LNQEEKEETLCN---HSERLAIAYGLISTAPGTTLRITKNLRACINCHS 707

Query: 482 FIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
             KL+SK+V+R+ +VRDA RFHHFK+G CSC+DYW
Sbjct: 708 ATKLISKLVNREIVVRDANRFHHFKNGVCSCRDYW 742



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 99/330 (30%), Positives = 164/330 (49%), Gaps = 4/330 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  + +     +NA+I GY  ++   +A+ ++ +M+  GV  +  T+ C+L  C   
Sbjct: 125 VFDEFPEPS--VFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGV 182

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L +G   H    + G + D  V N L+ +Y KCG V+  R +F+ + ++ +++W +MI
Sbjct: 183 PVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMI 242

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGY QNGL    L ++ +M+   V PD +  V VL +   +     G  +   +   G  
Sbjct: 243 SGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLE 302

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
             P L  +L  MYA+CG +  AR+ FD M    V+ W A+I GY  +G+   AV LF EM
Sbjct: 303 FEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEM 362

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           +   IR D     S + AC+  G  D   ++     NK   +      T ++D+  + G 
Sbjct: 363 ISKNIRTDSITVRSAILACAQVGSLDLA-KWMGDYINKTEYRNDVFVNTALIDMFAKCGS 421

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIH 330
           ++ A E+ +  L + D  VW A++    +H
Sbjct: 422 VDLAREVFDRTL-DKDVVVWSAMIVGYGLH 450



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 80/241 (33%), Positives = 136/241 (56%), Gaps = 6/241 (2%)

Query: 88  LMTMYVKC----GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG 143
           L+T +V      G + Y RK+FD+ PE  +  WNA+I GY+ +      +E+Y  M++ G
Sbjct: 105 LVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASG 164

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
           V PD  T   VL +C+ +    VG  V  QI   GF S+ F+ N L+ +YA+CG +++AR
Sbjct: 165 VNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQAR 224

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG 263
            +F+G+  + +VSWT++I GYG +G    A+++F +M +  ++PD  A VSVL A +   
Sbjct: 225 IVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVE 284

Query: 264 LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGAL 323
             ++G +  +G   K GL+  P+    +  +  + GQ+  A    + M + P+  +W A+
Sbjct: 285 DLEQG-KSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEI-PNVMMWNAM 342

Query: 324 L 324
           +
Sbjct: 343 I 343



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 1/143 (0%)

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
           ++  Q+  +G   + FL    +N     G +  AR +FD  P  +V  W AII GY  H 
Sbjct: 89  QIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHN 148

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY 288
               A++++  M  SG+ PDG     VL ACS   + + G +  +G   + G +      
Sbjct: 149 FFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVG-KRVHGQIFRLGFESDVFVQ 207

Query: 289 TCMVDLLGRAGQLNEALELIESM 311
             +V L  + G++ +A  + E +
Sbjct: 208 NGLVALYAKCGRVEQARIVFEGL 230


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/513 (41%), Positives = 320/513 (62%), Gaps = 5/513 (0%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           S    V +NA+I+ YV +     A++ F  + ++G++ NS T   +L +C     L LG 
Sbjct: 475 SKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGK 534

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
             H + +K GL+ D  V N L++M+V CG +   + LF+ +P++ L++WN +I+G+ Q+G
Sbjct: 535 WVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHG 594

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
                 + ++ M+  G+ PD +TF G+L++CA   A + G  +   I    F  +  +  
Sbjct: 595 KNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGT 654

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
            LI+MY +CG+++ A  +F  +P+K V SWT++I GY  HG G+ A++LF +M + G++P
Sbjct: 655 GLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKP 714

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           D   FV  LSAC+HAGL ++GL +F  MK ++ ++P  EHY CMVDL GRAG LNEA+E 
Sbjct: 715 DWITFVGALSACAHAGLIEEGLHHFQSMK-EFNIEPRMEHYGCMVDLFGRAGLLNEAVEF 773

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNL 367
           I  M VEPD  VWGALLGAC++H NVELAE A  K ++L+P + G +V+LSNIY+ A   
Sbjct: 774 IIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMW 833

Query: 368 DGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH 427
             + ++R +M +R + K PG S++E+ G+VH F   D+ H QT EI+  L++L   +++ 
Sbjct: 834 KEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQL 893

Query: 428 DGTKRSDQKNSEEHLNDTE----VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFI 483
                +     +   N+ E     HSE+LAI +G++ T P T IV+ KNLR+CGDCH   
Sbjct: 894 GYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLKTPPLTPIVISKNLRVCGDCHTAT 953

Query: 484 KLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K +SKI  RQ I RD+ RFHHFK G CSC D+W
Sbjct: 954 KFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 199/380 (52%), Gaps = 19/380 (5%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N L+ GYV + L  EA  L  +M +  V+ +  T + +L  C D   +  G   + + +
Sbjct: 179 WNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLIL 238

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K G D D  VG  L+ M++KCG +    K+FD +P + L+TW +MI+G A++G       
Sbjct: 239 KAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACN 298

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L++ M+  GV PD V FV +L +C H  A   G +V  +++  G+ +  ++  A+++MY 
Sbjct: 299 LFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYT 358

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG+++ A  +FD +  + VVSWTA+I G+  HG  + A   F++M++SGI P+   F+S
Sbjct: 359 KCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMS 418

Query: 255 VLSACSHAGLTDKG-------LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           +L ACS      +G       +E  YG  ++          T ++ +  + G L +A  +
Sbjct: 419 ILGACSSPSALKRGQQIQDHIIEAGYGSDDRV--------RTALLSMYAKCGSLKDAHRV 470

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEAR 365
            E  + + +   W A++ A   H+  + A   F  ++K  ++P N+  +  + N+   + 
Sbjct: 471 FEK-ISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKP-NSSTFTSILNVCKSSD 528

Query: 366 NLDGIMRVRMMMRERRLKKD 385
           +L+    V  ++ +  L+ D
Sbjct: 529 SLELGKWVHFLIMKAGLESD 548



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 100/336 (29%), Positives = 175/336 (52%), Gaps = 4/336 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD     T   V + ++I+G   +    +A +LF +M E+GV+ + V  + LL  C  P
Sbjct: 268 VFDNL--PTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHP 325

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H    + G D +  VG  +++MY KCGS++   ++FD V  + +++W AMI
Sbjct: 326 EALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMI 385

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +G+AQ+G        + +M   G+ P+ VTF+ +L +C+   A   G +++  I   G+G
Sbjct: 386 AGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYG 445

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S+  +  AL++MYA+CG+LK A  +F+ + ++ VV+W A+I  Y  H   + A+  F  +
Sbjct: 446 SDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQAL 505

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           LK GI+P+ + F S+L+ C  +   + G ++ + +  K GL+        +V +    G 
Sbjct: 506 LKEGIKPNSSTFTSILNVCKSSDSLELG-KWVHFLIMKAGLESDLHVSNALVSMFVNCGD 564

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELA 336
           L  A  L   M  + D   W  ++     H   ++A
Sbjct: 565 LMSAKNLFNDM-PKRDLVSWNTIIAGFVQHGKNQVA 599



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/348 (29%), Positives = 170/348 (48%), Gaps = 33/348 (9%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+I+G+  +  + EA   F KM E G+E N VT + +L  C  P  L  G      
Sbjct: 379 VSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDH 438

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ G   D  V   L++MY KCGS+    ++F+++ ++ ++ WNAMI+ Y Q+    + 
Sbjct: 439 IIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNA 498

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L  ++ +   G+ P++ TF  +L+ C    +  +G  V   I   G  S+  ++NAL++M
Sbjct: 499 LATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSM 558

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           +  CG+L  A+ +F+ MP++ +VSW  II G+  HG  +VA   F  M +SGI+PD   F
Sbjct: 559 FVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITF 618

Query: 253 VSVLSACS-----------HAGLTDKGLEY-------FYGMKNKYG--------LQPGPE 286
             +L+AC+           HA +T+   +           M  K G            P+
Sbjct: 619 TGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPK 678

Query: 287 H----YTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGAC 327
                +T M+    + G+  EALEL   M    V+PD   +   L AC
Sbjct: 679 KNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSAC 726



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 104/345 (30%), Positives = 180/345 (52%), Gaps = 6/345 (1%)

Query: 16  NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVK 75
           NA+++        +EA+ +  ++    ++I   T   LL +C+    L  G   +    K
Sbjct: 79  NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138

Query: 76  FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLEL 135
            G+  D  + N L+ MY KCG+    +++FD + EK + +WN ++ GY Q+GL     +L
Sbjct: 139 SGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKL 198

Query: 136 YREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR 195
           + +M    V PD  TFV +L++CA       G E+   I   G+ ++ F+  ALINM+ +
Sbjct: 199 HEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIK 258

Query: 196 CGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSV 255
           CG++  A  +FD +P + +V+WT++I G   HG  + A  LF  M + G++PD  AFVS+
Sbjct: 259 CGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSL 318

Query: 256 LSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEP 315
           L AC+H    ++G +    MK + G        T ++ +  + G + +ALE+ +  LV+ 
Sbjct: 319 LRACNHPEALEQGKKVHARMK-EVGWDTEIYVGTAILSMYTKCGSMEDALEVFD--LVKG 375

Query: 316 DGAV-WGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLL 357
              V W A++     H  ++ A L F K+I+  +EP    +  +L
Sbjct: 376 RNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSIL 420


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/521 (42%), Positives = 316/521 (60%), Gaps = 9/521 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD   + T   V +N+++ GYV N    +A+++F KM E+G++   VT++  L  C D 
Sbjct: 305 IFDGMDQKT--VVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADL 362

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  G   H    +  L  D SV N L++MY KC  VD    +F+ +  +  ++WNAMI
Sbjct: 363 GDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMI 422

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GYAQNG  +  L  + EMKSLG+ PD+ T V V+ + A L        +   I  +   
Sbjct: 423 LGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLD 482

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            N F+  AL++MY++CG +  AR +FD +  + V++W A+I GYG HG G  A+ LFD+M
Sbjct: 483 KNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKM 542

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            K  + P+   ++SV+SACSH+GL D+GL +F  MK  YGL+P  +HY  MVDLLGRAG+
Sbjct: 543 KKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGR 602

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           + EA + IE+M + P   V+GA  GACKIHKN+E+ E A  K+ +L P   GY+VLL+NI
Sbjct: 603 IKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANI 662

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+       +  VR  M ++ LKK PG S VEL+  VH F  G   H Q+  IY  L++L
Sbjct: 663 YASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEEL 722

Query: 421 ENLVQEHDGTKRSD-----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRI 475
              ++       ++     + + +E L ++  HSEKLAIAFG++NTSPGT I V KNLR+
Sbjct: 723 VYEIKAAGYVPDTNLILDVEDDVQEQLLNS--HSEKLAIAFGLLNTSPGTTIHVRKNLRV 780

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           CGDCH   K +S +  R+ IVRD  RFHHFK+G CSC DYW
Sbjct: 781 CGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 110/388 (28%), Positives = 197/388 (50%), Gaps = 6/388 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +I+G+  N    +A+ L  +M+++G   +S+T++ +LP   D G L +G   H  
Sbjct: 214 VSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGY 273

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ G     ++   L  MY KCGSV+  R +FD + +K +++WN+M+ GY QNG     
Sbjct: 274 AIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKA 333

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + ++ +M   G+ P  VT +  L +CA LG    G  V + +     GS+  + N+LI+M
Sbjct: 334 IAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISM 393

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++C  +  A  IF+ +  +T VSW A+I GY  +G    A+  F EM   G++PD    
Sbjct: 394 YSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTM 453

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           VSV+ A +   +T +  ++ +G+  +  L       T +VD+  + G ++ A +L + M+
Sbjct: 454 VSVIPALAELSVT-RHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFD-MI 511

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDGI 370
            +     W A++     H     A   F K+ K  +EP +  Y  ++S         +G+
Sbjct: 512 SDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGL 571

Query: 371 MRVRMMMRERRLKKDPGY--SYVELKGR 396
              + M ++  L+    +  + V+L GR
Sbjct: 572 RHFKSMKQDYGLEPSMDHYGAMVDLLGR 599



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 89/258 (34%), Positives = 141/258 (54%)

Query: 11  LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
           L   Y+ ++ GY  NS +  A++   +MR   V+        LL +C D   L  G   H
Sbjct: 111 LDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIH 170

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
              +      +      ++ MY KC  +D   K+FD++PE+ L++WN +I+G++QNG A 
Sbjct: 171 GQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAK 230

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             LEL   M+  G  PD++T V VL + A +G   VG  +       GF     ++ AL 
Sbjct: 231 KALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALA 290

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MY++CG+++ AR IFDGM +KTVVSW +++ GY  +G  E A+ +F++ML+ GI P G 
Sbjct: 291 DMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGV 350

Query: 251 AFVSVLSACSHAGLTDKG 268
             +  L AC+  G  ++G
Sbjct: 351 TIMEALHACADLGDLERG 368



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 1/240 (0%)

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + +K GL  +      L++++ K GS++   ++F+ + +K    ++ M+ GYA+N     
Sbjct: 71  LVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLET 130

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L     M+   V P    F  +L  C        G E+  Q+  N F +N F    ++N
Sbjct: 131 ALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVN 190

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+C  +  A  +FD MP + +VSW  II G+  +G  + A++L   M   G RPD   
Sbjct: 191 MYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSIT 250

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            V+VL A +  GL   G +  +G   + G        T + D+  + G +  A  + + M
Sbjct: 251 LVTVLPAAADVGLLMVG-KSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGM 309


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/515 (43%), Positives = 324/515 (62%), Gaps = 14/515 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++IS       V+ AV LF  M E GV  + +T++ L       G        HC 
Sbjct: 235 VTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCY 294

Query: 73  CVKFGLDL-DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             + G D+ D   GN ++ MY K   +D  +K+FD +P++ +++WN +I+GY QNGLA  
Sbjct: 295 VRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANE 354

Query: 132 VLELYREMKS-LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
            + +Y +M +  G+ P   TFV VL + ++LG    G+ +       G   + ++   LI
Sbjct: 355 AIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLI 414

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           ++YA+CG L +A  +F+ MPR++   W AII G G+HGHG  A+ LF +M +  I+PD  
Sbjct: 415 DLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHV 474

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            FVS+L+ACSHAGL D+G  +F  M+  YG+ P  +HYTCMVD+LGRAGQL+EA E I+S
Sbjct: 475 TFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQS 534

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M ++PD AVWGALLGAC+IH NVE+ ++A   + +L+P N GYYVL+SN+Y++    DG+
Sbjct: 535 MPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGV 594

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRN--HHQTVEIYR----MLDKLENLV 424
             VR ++R + L+K PG+S +E+KG V +F  G +   H Q  EI R    +L K+++  
Sbjct: 595 DAVRSLVRRQNLQKTPGWSSMEVKGSVSVFYSGTQTEPHPQHEEIQRGLHDLLAKMKSAG 654

Query: 425 QEHDGT---KRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHL 481
              D +   +  ++   E+ LN+   HSE+LAIAFGIINT PGT + + KNLR+CGDCH 
Sbjct: 655 YVPDYSFVLQDVEEDEKEQILNN---HSERLAIAFGIINTPPGTPLHIYKNLRVCGDCHS 711

Query: 482 FIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
             K +SKI +R+ IVRDA RFHHFK G CSC D+W
Sbjct: 712 ATKYISKITEREIIVRDANRFHHFKDGHCSCGDFW 746



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 107/332 (32%), Positives = 174/332 (52%), Gaps = 6/332 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  +       +NA++SG   N+  ++AV+L G+M  +GV  ++VT+  +LP+CV  
Sbjct: 124 VFDEMPERD--VPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVL 181

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G   L +  H   VK GL  +  V N L+ +Y K G +     +F  +  + L+TWN++I
Sbjct: 182 GDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSII 241

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           S   Q G     +EL+  M   GVCPD +T V + S+ A  G       V   ++  G+ 
Sbjct: 242 SANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWD 301

Query: 181 SNPFL-NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
               +  NA+++MYA+   +  A+ +FD +P + VVSW  +I GY  +G    A++++++
Sbjct: 302 VGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYND 361

Query: 240 MLK-SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
           M    G++P    FVSVL A S+ G   +G+   + +  K GL       TC++DL  + 
Sbjct: 362 MHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMR-MHALSIKTGLNLDVYVTTCLIDLYAKC 420

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           G+L EA+ L E M     G  W A++    +H
Sbjct: 421 GKLVEAMFLFEHMPRRSTGP-WNAIIAGLGVH 451



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 126/257 (49%), Gaps = 4/257 (1%)

Query: 70  HCICVKFGL-DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
           H   ++ GL   +      L+  Y++ G V    ++FD++PE+ +  WNAM+SG  +N  
Sbjct: 89  HACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTR 148

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
           A   + L   M   GV  DAVT   VL  C  LG  ++ L +      +G     F+ NA
Sbjct: 149 AADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNA 208

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           LI++Y + G L +A  +F GM  + +V+W +II      G    AV+LF  M++SG+ PD
Sbjct: 209 LIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPD 268

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP-EHYTCMVDLLGRAGQLNEALEL 307
               VS+ SA +  G  + G +  +    + G   G       MVD+  +  +++ A ++
Sbjct: 269 VLTLVSLASAVAQCG-DELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKV 327

Query: 308 IESMLVEPDGAVWGALL 324
            ++ L + D   W  L+
Sbjct: 328 FDN-LPDRDVVSWNTLI 343


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/515 (42%), Positives = 323/515 (62%), Gaps = 18/515 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +NA+ISG+  N    EA SLF  M  +G+  N  T+  +L         ++    H +
Sbjct: 279 IAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHAL 338

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G + D  V N L+  Y KCG V+   ++F++ P   L+ + ++++ YAQ+G     
Sbjct: 339 SLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEA 398

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L LY EM+  G+ PD+     +L++CA L A+  G +V   I   GF S+ F  N+L+NM
Sbjct: 399 LRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNM 458

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG+++ A   F  +P + +VSW+A+IGG   HG+G+ A+QLF +MLK G+ P+    
Sbjct: 459 YAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITL 518

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           VSVL AC+HAGL  +   YF  MK  +G++P  EHY CM+DLLGRAG+L  A+EL+  M 
Sbjct: 519 VSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMP 578

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            + +  VWGALLGA +IHKN++L E A   ++ LEP  +G +VLL+NIY+     D + R
Sbjct: 579 FQANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVAR 638

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE------ 426
           VR +M++ ++KK+PG S++E+K +V+ F+VGDR+H ++ EIY  LD+L +L+++      
Sbjct: 639 VRRLMKDGKVKKEPGMSWLEVKDKVYTFIVGDRSHSRSTEIYAKLDELSDLLKKAGYVPM 698

Query: 427 -----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHL 481
                HD  +RS+++    H      HSEKLA+AFG+I T PG  I V KNLRIC DCH 
Sbjct: 699 VEIDLHD-VERSEKEQLLYH------HSEKLAVAFGLIATPPGAPIRVKKNLRICFDCHT 751

Query: 482 FIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +K +SKIV R+ IVRD  RFHHF+ G CSC +YW
Sbjct: 752 VLKFISKIVSREIIVRDTNRFHHFREGSCSCGEYW 786



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 175/384 (45%), Gaps = 41/384 (10%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +NAL S YV + +  EAVSLF  M   G+  N  ++  ++ +C        G   H 
Sbjct: 76  VVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHG 135

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K G D D    N L+ MY K G ++    +FD++ +  +++WNA+I+G   +     
Sbjct: 136 YLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHR 195

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            LEL REM   G+CP+  T    L +CA +    +G ++   +     GS+ FL   LI+
Sbjct: 196 ALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLID 255

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY++C ++  AR +F  MP + +++W A+I G+  +   E A  LF  M   GI  + T 
Sbjct: 256 MYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTT 315

Query: 252 FVSVLSACS-----------HAGLTDKGLEY----FYGMKNKYG-----------LQPGP 285
             +VL + +           HA     G E+       + + YG            +  P
Sbjct: 316 LSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESP 375

Query: 286 ----EHYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGACKIHKNVELAEL 338
                 +T +V    + GQ  EAL L   M    ++PD  V  +LL AC       L+  
Sbjct: 376 IVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNAC-----ASLSAY 430

Query: 339 AFGKVIKLEPMNTGYYVLLSNIYS 362
             GK + +  +  G+   +S+I++
Sbjct: 431 EQGKQVHVHILKFGF---MSDIFA 451



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 116/409 (28%), Positives = 190/409 (46%), Gaps = 39/409 (9%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  K     V +NA+I+G VL+     A+ L  +M + G+  N  T+   L  C   
Sbjct: 168 VFDEIAKPD--IVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGM 225

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
               LG   H   +K  +  D  +G  L+ MY KC S+D  R +F  +PE+ +I WNA+I
Sbjct: 226 ALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVI 285

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SG++QN        L+  M + G+  +  T   VL S A L A+ +  ++      +GF 
Sbjct: 286 SGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFE 345

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            + ++ N+LI+ Y +CG+++ A  +F+  P   +V +T+++  Y   G GE A++L+ EM
Sbjct: 346 FDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEM 405

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEY-------------FYG--MKNKYGLQPGP 285
              GI+PD     S+L+AC+     ++G +              F G  + N Y      
Sbjct: 406 QDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSI 465

Query: 286 EHYTC---------------MVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGAC 327
           E  +C               M+  L + G   EAL+L + ML   V P+     ++L AC
Sbjct: 466 EDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCAC 525

Query: 328 KIHKNVELAELAFGK---VIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
                V  A+  F     +  +EPM   +Y  + ++   A  L+  M +
Sbjct: 526 NHAGLVAEAKHYFNSMKILFGIEPMQE-HYACMIDLLGRAGKLEAAMEL 573



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 150/300 (50%), Gaps = 7/300 (2%)

Query: 42  GVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYG 101
           G++ N      +L  C     L LG   H I V  G D D  V N L+ +Y KCG     
Sbjct: 5   GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDA 64

Query: 102 RKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL 161
           R LFD +P++ +++WNA+ S Y  + +    + L+ +M   G+ P+  +   +++ C  L
Sbjct: 65  RSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGL 124

Query: 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
                G ++   +   G+ S+ F  NAL++MYA+ G L+ A ++FD + +  +VSW AII
Sbjct: 125 EDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAII 184

Query: 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281
            G  +H +   A++L  EM KSG+ P+     S L AC+   L + G +    +     +
Sbjct: 185 AGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSL---IKM 241

Query: 282 QPGPEHY--TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL-GACKIHKNVELAEL 338
             G + +    ++D+  +   +++A  L+  ++ E D   W A++ G  +  ++ E A L
Sbjct: 242 DMGSDSFLGVGLIDMYSKCNSMDDA-RLVFKLMPERDMIAWNAVISGHSQNEEDEEAASL 300



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 106/197 (53%), Gaps = 10/197 (5%)

Query: 139 MKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGN 198
           M  LG+  +   F  VL +C       +G +V   +   GF S+ F+ N+L+ +YA+CG 
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 199 LKKARAIFDGMPRKTVVSWTAIIGGYGIHG--HGEVAVQLFDEMLKSGIRPDGTAFVSVL 256
              AR++FD +P ++VVSW A+   Y +H   HGE AV LF +M+ SGIRP+  +  S++
Sbjct: 61  FGDARSLFDAIPDRSVVSWNALFSCY-VHSDMHGE-AVSLFHDMVLSGIRPNEFSLSSMI 118

Query: 257 SACSHAGLTD--KGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           + C+  GL D  +G +  +G   K G          +VD+  + G L +A  + +  + +
Sbjct: 119 NVCT--GLEDSVQGRK-IHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDE-IAK 174

Query: 315 PDGAVWGALLGACKIHK 331
           PD   W A++  C +H+
Sbjct: 175 PDIVSWNAIIAGCVLHE 191


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/537 (40%), Positives = 316/537 (58%), Gaps = 35/537 (6%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           YN+ I G+  +    ++   + + +  G+  +++T   L+  C   G L +G+  H   +
Sbjct: 81  YNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQII 140

Query: 75  KFGLDLDFSVGNCLMTMY-------------------------------VKCGSVDYGRK 103
           + G D D  V N L+TMY                               +K G V   RK
Sbjct: 141 RHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARK 200

Query: 104 LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163
           LFD++PEK L+TW+ MISGYA+N      +ELY  ++S GV  +    V V++SCAHLGA
Sbjct: 201 LFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGA 260

Query: 164 HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGG 223
             +G      I  N    N  L  AL++MYARCG++ KA  +FD +P +  +SWT +I G
Sbjct: 261 LELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAG 320

Query: 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP 283
           + +HG+ E A++ F  M K+G+ P    F +VLSACSH GL ++GLE F  MK  Y ++P
Sbjct: 321 FAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEP 380

Query: 284 GPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
             EHY CMVDLLGRAG+L EA + +  M ++P+  +WGALLGAC+IHKN E+AE A   +
Sbjct: 381 RLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKTL 440

Query: 344 IKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVG 403
           I+L+P ++GYYVLLSNIY+     + +  +R MM+ER + K PGY+  E+ G+VH F +G
Sbjct: 441 IELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKVHKFTIG 500

Query: 404 DRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQK----NSEEHLNDTEVHSEKLAIAFGII 459
           D+ H +  +I RM +++   ++    T  +D      + EE  ++   HSEKLAIA+ I+
Sbjct: 501 DKTHPEIQQIERMWEEILGKIRLAGYTGNNDDALFDIDEEEKESNIHRHSEKLAIAYAIM 560

Query: 460 NTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            T     I ++KNLR+C DCH   KL+SK+ +R+ IVRD  RFHHFK G CSC DYW
Sbjct: 561 RTKGHDPIRIVKNLRVCEDCHTATKLISKVYERELIVRDRNRFHHFKGGACSCMDYW 617



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 135/248 (54%), Gaps = 6/248 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++ +ISGY  NS   +A+ L+  ++ +GV  N   M+ ++  C   G L LG   H  
Sbjct: 211 VTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDY 270

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++  + ++  +G  L+ MY +CGS+D    +FDQ+P +  ++W  +I+G+A +G A   
Sbjct: 271 ILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKA 330

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           LE +  M+  G+ P  +TF  VLS+C+H G    GLE+ + ++ + +   P L +   ++
Sbjct: 331 LEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRD-YRIEPRLEHYGCMV 389

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++  R G L +A    + MP K     W A++G   IH + E+A +    +++  ++P+ 
Sbjct: 390 DLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIE--LKPEH 447

Query: 250 TAFVSVLS 257
           + +  +LS
Sbjct: 448 SGYYVLLS 455



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 154/344 (44%), Gaps = 44/344 (12%)

Query: 51  LCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE 110
           L  L  C    +L +    H   ++     D    +CL+++ +    +DY  ++F Q+  
Sbjct: 19  LSFLESCTTLSHLKI---IHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQN 75

Query: 111 KGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEV 170
             L  +N+ I G++ +         Y + K  G+ PD +T+  ++ +C   G+  +G++ 
Sbjct: 76  PNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQA 135

Query: 171 EQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHG 230
             QI  +GF S+ ++ N+L+ MY+  G++K A  +F  +    VVSWT+++ GY   G  
Sbjct: 136 HGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDV 195

Query: 231 EVAVQLFDEM------------------------------LKS-GIRPDGTAFVSVLSAC 259
             A +LFD+M                              L+S G+  + T  VSV+++C
Sbjct: 196 TSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASC 255

Query: 260 SHAG---LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPD 316
           +H G   L ++  +Y    K    L  G    T +VD+  R G +++A+ + +  L   D
Sbjct: 256 AHLGALELGERAHDYILRNKMTVNLILG----TALVDMYARCGSIDKAIWVFDQ-LPGRD 310

Query: 317 GAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
              W  L+    +H   E A   F ++ K  L P    +  +LS
Sbjct: 311 ALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLS 354


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/518 (43%), Positives = 319/518 (61%), Gaps = 13/518 (2%)

Query: 8    STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
            S+   V +N+LI+GY        A+ +F K+R   +  ++ TM+ ++P C     L  G 
Sbjct: 492  SSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGT 551

Query: 68   CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP-EKGLITWNAMISGYAQN 126
            C H + VK G + D  V N L+ MY KCGS+     LF++    K  +TWN +I+ Y QN
Sbjct: 552  CIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQN 611

Query: 127  GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
            G A   +  + +M+     P++VTFV VL + A+L A   G+     I   GF SN  + 
Sbjct: 612  GHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVG 671

Query: 187  NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
            N+LI+MYA+CG L  +  +F+ M  K  VSW A++ GY +HGHG+ A+ LF  M +S ++
Sbjct: 672  NSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQ 731

Query: 247  PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
             D  +FVSVLSAC HAGL ++G + F+ M +KY ++P  EHY CMVDLLGRAG  +E L 
Sbjct: 732  IDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLG 791

Query: 307  LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366
             I+ M VEPD  VWGALLG+C++H NV+L E+A   ++KLEP N  ++V+LS+IY+++  
Sbjct: 792  FIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGR 851

Query: 367  LDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY----RMLDKLEN 422
                 + R  M +  LKK PG S+VELK +VH F VGD++H Q   ++     +L+K+E 
Sbjct: 852  WADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEK 911

Query: 423  LVQEHDGTKRSDQKNSEEHLNDTEV----HSEKLAIAFGIINTSPGTEIVVMKNLRICGD 478
            +    D  +    +N EE   D E+    HSE+LAI F ++NT PG+ I ++KNLR+C D
Sbjct: 912  IGYVPD--RSCVLQNVEE--EDKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCAD 967

Query: 479  CHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            CH   K +SKI  R+ IVRDATRFHHF+ G CSC DYW
Sbjct: 968  CHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/319 (32%), Positives = 168/319 (52%), Gaps = 3/319 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++A+I+  V      EA+SLF +M+ Q ++ N VT++ +LP C D   L LG   HC 
Sbjct: 396 VAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCF 455

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK  +D D S G  L++MY KCG        F+++  + ++TWN++I+GYAQ G   + 
Sbjct: 456 TVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNA 515

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           ++++ +++   + PDA T VGV+ +CA L     G  +   I   GF S+  + NALI+M
Sbjct: 516 IDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDM 575

Query: 193 YARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           YA+CG+L  A  +F+     K  V+W  II  Y  +GH + A+  F +M      P+   
Sbjct: 576 YAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVT 635

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           FVSVL A ++     +G+  F+    + G          ++D+  + GQL+ + +L   M
Sbjct: 636 FVSVLPAAAYLAAFREGMA-FHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEM 694

Query: 312 LVEPDGAVWGALLGACKIH 330
               D   W A+L    +H
Sbjct: 695 -DHKDTVSWNAMLSGYAVH 712



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 149/326 (45%), Gaps = 3/326 (0%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+ +      V +  +++GY  N    E + LF KM+   V IN V+ +       + 
Sbjct: 285 VFDQMVDQD--DVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAET 342

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H   ++  +D D  V   LM MY KCG  +  ++LF  +  + L+ W+A+I
Sbjct: 343 IDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAII 402

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +   Q G     L L++EM++  + P+ VT + +L +CA L    +G  +          
Sbjct: 403 AALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMD 462

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S+     AL++MYA+CG    A   F+ M  + +V+W ++I GY   G    A+ +F ++
Sbjct: 463 SDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKL 522

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
             S I PD    V V+ AC+     D+G    +G+  K G +        ++D+  + G 
Sbjct: 523 RLSAINPDAGTMVGVVPACALLNDLDQG-TCIHGLIVKLGFESDCHVKNALIDMYAKCGS 581

Query: 301 LNEALELIESMLVEPDGAVWGALLGA 326
           L  A  L        D   W  ++ A
Sbjct: 582 LPSAEFLFNKTDFTKDEVTWNVIIAA 607



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/330 (30%), Positives = 161/330 (48%), Gaps = 18/330 (5%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLP-ICVD 59
           VFD+  K     V +NA+I+G   +    EAV  F  M+  GVE +SV++L L P IC  
Sbjct: 186 VFDKMPKRD--VVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKL 243

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
                + +C       F  D   +V N L+ +Y KCG VD  R++FDQ+ ++  ++W  M
Sbjct: 244 SN---IELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTM 300

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL-----GAHSVGLEVEQQI 174
           ++GYA NG    VLEL+ +MK   V  + V+ V    + A       G    G  ++Q+I
Sbjct: 301 MAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRI 360

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
            ++   + P     L+ MYA+CG  +KA+ +F G+  + +V+W+AII      G+ E A+
Sbjct: 361 DSDILVATP-----LMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEAL 415

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
            LF EM    ++P+    +S+L AC+   L   G +  +    K  +       T +V +
Sbjct: 416 SLFQEMQNQKMKPNRVTLMSILPACADLSLLKLG-KSIHCFTVKADMDSDLSTGTALVSM 474

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALL 324
             + G    AL     M    D   W +L+
Sbjct: 475 YAKCGFFTAALTTFNRM-SSRDIVTWNSLI 503



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 162/326 (49%), Gaps = 6/326 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD +   +   + +N++I  Y  +   +EA+ ++  M E+G+E +  T   +L  C   
Sbjct: 85  VFDSTPNPSR--ILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGA 142

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G+  H    + GL+ D  +G  L+ MY K G +   R++FD++P++ ++ WNAMI
Sbjct: 143 LNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMI 202

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +G +Q+      ++ +R M+ +GV P +V+ + +      L    +   +   +    F 
Sbjct: 203 AGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFS 262

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S   ++N LI++Y++CG++  AR +FD M  +  VSW  ++ GY  +G     ++LFD+M
Sbjct: 263 SA--VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKM 320

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
               +R +  + VS   A +     +KG E  +G   +  +       T ++ +  + G+
Sbjct: 321 KLGNVRINKVSAVSAFLAAAETIDLEKGKE-IHGCALQQRIDSDILVATPLMVMYAKCGE 379

Query: 301 LNEALELIESMLVEPDGAVWGALLGA 326
             +A +L    L   D   W A++ A
Sbjct: 380 TEKAKQLFWG-LQGRDLVAWSAIIAA 404



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 110/241 (45%), Gaps = 13/241 (5%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L +++ KC   D  R +FD  P    I WN+MI  Y ++      LE+Y  M   G+ PD
Sbjct: 72  LYSLFHKC---DLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPD 128

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
             TF  VL +C        G+    +I   G   + F+   L++MY++ G+LK+AR +FD
Sbjct: 129 KYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFD 188

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC---SHAGL 264
            MP++ VV+W A+I G         AV  F  M   G+ P   + +++       S+  L
Sbjct: 189 KMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIEL 248

Query: 265 TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
                 Y +       +  G      ++DL  + G ++ A  + + M V+ D   WG ++
Sbjct: 249 CRSIHGYVFRRDFSSAVSNG------LIDLYSKCGDVDVARRVFDQM-VDQDDVSWGTMM 301

Query: 325 G 325
            
Sbjct: 302 A 302



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 6/172 (3%)

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
           +LSSC HL      L++  QI  +GF  +  + + LIN+Y+       AR++FD  P  +
Sbjct: 38  LLSSCKHLNPL---LQIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTPNPS 93

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
            + W ++I  Y        A++++  M++ G+ PD   F  VL AC+ A    +G+ +F+
Sbjct: 94  RILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGV-WFH 152

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           G  ++ GL+        +VD+  + G L  A E+ + M  + D   W A++ 
Sbjct: 153 GEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKM-PKRDVVAWNAMIA 203


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/508 (42%), Positives = 315/508 (62%), Gaps = 7/508 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N +ISGY  N+    A  +F  M + G+  +  T+L LL  C D   +  G   H   V
Sbjct: 230 WNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAV 289

Query: 75  KFGL-DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           +  + + +    N L+ MY  C  +   R+LF++V  K  ++WN+MI GYA+NG A   L
Sbjct: 290 RNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESL 349

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
            L+R M   G  PD VTF+ VL +C  + A   G+ +   +   GF +N  +  AL++MY
Sbjct: 350 RLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMY 409

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
           ++CG+L  +R +FD MP K++VSW+A++ GYG+HG G  A+ + D M  + + PD   F 
Sbjct: 410 SKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFT 469

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           S+LSACSHAGL  +G E FY M+ +Y ++P   HY+CMVDLLGRAG L+EA  +I +M +
Sbjct: 470 SILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEI 529

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
           +P   +W ALL A ++HKN++LAE++  KV  + P     Y+ LSNIY+  +  D + RV
Sbjct: 530 KPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPKVVSSYICLSNIYAAEKRWDDVERV 589

Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS 433
           R M+R + LKK PG S++EL   VH F+VGD++H QT +IY  L++L+  ++E  G K  
Sbjct: 590 RAMVRRKGLKKSPGCSFIELDNMVHRFLVGDKSHQQTEDIYAKLNELKQQLKEA-GYKPD 648

Query: 434 DQ---KNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
                 + EE + +  +  HSE+LAIAF +INT PGT I + KNLR+CGDCH   KL+S+
Sbjct: 649 TSLVFYDVEEEVKEKMLWDHSERLAIAFALINTGPGTVIRITKNLRVCGDCHTVTKLISE 708

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +  R+ I+RD  RFHHF  GFCSC DYW
Sbjct: 709 LTGREIIMRDIHRFHHFIKGFCSCGDYW 736



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 118/412 (28%), Positives = 175/412 (42%), Gaps = 50/412 (12%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTML---CLLPICVDPGYLWLGMCCHC 71
           YN+  S +     V++ V     MRE  ++   +T L    LL    +      G   H 
Sbjct: 25  YNSFTSHFSQGD-VAQMVERSLSMREHPLQQYPLTSLQCGALLQSFTNTKSFKQGQQLHA 83

Query: 72  ICVKFG-LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
             + F  L+ +  +   L   Y  CG +     +FD +  K    WN MI GYA NGL  
Sbjct: 84  HMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYASNGLPM 143

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             L LYREM   G   D  T+  VL +C  L    +G  V  ++   G  S+ ++ N+L+
Sbjct: 144 KSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLL 203

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
            MYA+ G++  AR +FD M  + + SW  +I GY  +     A  +FD M K+G+  D T
Sbjct: 204 AMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCT 263

Query: 251 AFVSVLSACSHAGLTDKG-------LEYFYGMKNKYGLQPGPEHY---TCMVD------- 293
             + +LSAC+      +G       +    G  NK+      E Y    CMVD       
Sbjct: 264 TLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFER 323

Query: 294 ------------LLG--RAGQLNEALELIESMLVE---PDGAVWGALLGACKIHKNVELA 336
                       +LG  R G   E+L L   M ++   PD   + A+LGAC      ++A
Sbjct: 324 VRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACD-----QIA 378

Query: 337 ELAFGKVI------KLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRL 382
            L +G  I      K    NT     L ++YS+  +L    RV   M ++ L
Sbjct: 379 ALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSL 430



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 138/281 (49%), Gaps = 14/281 (4%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           TV +N++I GY  N    E++ LF +M   G   + VT + +L  C     L  GM  H 
Sbjct: 329 TVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHS 388

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             VK G D +  VG  L+ MY KCGS+   R++FD++P+K L++W+AM++GY  +G    
Sbjct: 389 YLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGRE 448

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN--NAL 189
            + +   MK+  V PD   F  +LS+C+H G    G E+  +++   +   P L+  + +
Sbjct: 449 AISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKE-YNVKPALSHYSCM 507

Query: 190 INMYARCGNLKKARAIFDGMPRK-TVVSWTAIIGGYGIHGH---GEVAVQ-LFDEMLKSG 244
           +++  R G+L +A  I   M  K T   W A++    +H +    E++ Q +FD      
Sbjct: 508 VDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFD------ 561

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
           + P   +    LS    A      +E    M  + GL+  P
Sbjct: 562 MNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSP 602


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/509 (43%), Positives = 310/509 (60%), Gaps = 4/509 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +NA+I+GY       EA+ LF  MR+  V  N  T++ +L  C     L LG     
Sbjct: 226 VVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRS 285

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                GL  +  + N L+ MY KCG +   R+LFD + E+ +I+WN MI GY        
Sbjct: 286 WIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKE 345

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L L+REM + GV P  +TF+ +L SCAHLGA  +G  +   I  N    +  L+ +LI+
Sbjct: 346 ALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLID 405

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +YA+CGN+  AR +FDGM  K++ SW A+I G  +HG  + A +LF +M   GI P+   
Sbjct: 406 LYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEIT 465

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           FV +LSAC HAGL D G ++F  M   Y + P  +HY CM+DLLGRAG   EA  L+++M
Sbjct: 466 FVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNM 525

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            V+PDGA+WG+LLGAC+ H  VEL EL   ++ +LEP N G YVLLSNIY+ A   D + 
Sbjct: 526 EVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVA 585

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH---- 427
           R+R  + +R +KK PG + +E+   VH F+VGD+ H Q+ +IYRML++++  ++      
Sbjct: 586 RIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVA 645

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           D ++     + E        HSEKLAIAFG+I+T PGT I ++KNLR+C +CH   KL+S
Sbjct: 646 DTSEVLYDMDEEWKEGALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLIS 705

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KI +R+ I RD  RFHHFK G CSC DYW
Sbjct: 706 KIFNREIIARDRNRFHHFKDGSCSCNDYW 734



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/387 (31%), Positives = 188/387 (48%), Gaps = 36/387 (9%)

Query: 5   SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLW 64
           SI+  +L + +N++I G  ++   + A+  F +M   GVE NS T   LL  C       
Sbjct: 88  SIEEPNLFI-WNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAH 146

Query: 65  LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSV-------------------------- 98
            G   H   +K G   D  +   L+ MY + G +                          
Sbjct: 147 EGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYA 206

Query: 99  -----DYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVG 153
                D  R+LFD++P K +++WNAMI+GYAQ G +   L L+ +M+   V P+  T V 
Sbjct: 207 LWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVS 266

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
           VLS+CA   A  +G  +   I+  G  SN  L NALI+MY++CG+L+ AR +FD M  + 
Sbjct: 267 VLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERD 326

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
           V+SW  +IGGY      + A+ LF EML SG+ P    F+S+L +C+H G  D G ++ +
Sbjct: 327 VISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLG-KWIH 385

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNV 333
              NK          T ++DL  + G +  A ++ + M ++   A W A++    +H   
Sbjct: 386 AYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIK-SLASWNAMICGLAMHGQA 444

Query: 334 ELAELAFGKVIK--LEPMNTGYYVLLS 358
           + A   F K+    +EP    +  +LS
Sbjct: 445 DKAFELFSKMSSDGIEPNEITFVGILS 471



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 126/263 (47%), Gaps = 33/263 (12%)

Query: 94  KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVG 153
           + G + Y   LF+ + E  L  WN+MI G + +      L  +  M   GV P++ TF  
Sbjct: 75  RSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPF 134

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK------------- 200
           +L SCA L +   G ++   +   GF S+ F++ +LINMYA+ G +              
Sbjct: 135 LLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRD 194

Query: 201 ------------------KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
                             +AR +FD MP K VVSW A+I GY   G  + A+ LF++M K
Sbjct: 195 AISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRK 254

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
           + + P+ +  VSVLSAC+ +   D G      ++++ GL    +    ++D+  + G L 
Sbjct: 255 ANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDR-GLCSNLKLVNALIDMYSKCGDLQ 313

Query: 303 EALELIESMLVEPDGAVWGALLG 325
            A EL + ML E D   W  ++G
Sbjct: 314 TARELFDDML-ERDVISWNVMIG 335



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 33/173 (19%), Positives = 74/173 (42%), Gaps = 15/173 (8%)

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
           VL+ +  +K L  C    TF  + +     G H+    + + I+               +
Sbjct: 26  VLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIE--------------FS 71

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
             +R G++  A ++F+ +    +  W ++I G  +     +A+  F  M+ SG+ P+   
Sbjct: 72  AVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYT 131

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
           F  +L +C+      +G +  +    K G       +T ++++  ++G++N A
Sbjct: 132 FPFLLKSCAKLASAHEG-KQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNA 183


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/508 (42%), Positives = 309/508 (60%), Gaps = 4/508 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  LI+GY     V  A+ L  KM++  V  N +T   +L  C  P  L  G   H  
Sbjct: 264 VTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRY 323

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ G   +  V N L+TMY KCG +   RKLF  +P + ++TW AM++GYAQ G     
Sbjct: 324 IIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEA 383

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           ++L+R M+  G+ PD +TF   L+SC+       G  + QQ+   G+  + +L +AL++M
Sbjct: 384 IDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSM 443

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG++  AR +F+ M  + VV+WTA+I G   HG    A++ F++M K GI+PD   F
Sbjct: 444 YAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTF 503

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            SVLSAC+H GL ++G ++F  M   YG++P  EHY+C VDLLGRAG L EA  +I +M 
Sbjct: 504 TSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMP 563

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            +P  +VWGALL AC+IH +VE  E A   V+KL+P + G YV LSNIY+ A   +   +
Sbjct: 564 FQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEK 623

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH----D 428
           VR +M +R + K+PG S++E+ G+VH+F V D++H +  EIY  L KL   ++E     D
Sbjct: 624 VRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELGKLTEQIKEQGYVPD 683

Query: 429 GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
                   + E+ +     HSE+LAI +G++ T PGT I ++KNLR+CGDCH   K +SK
Sbjct: 684 TRFVLHDVDEEQKVQTLCSHSERLAITYGLMKTPPGTPIRIVKNLRVCGDCHTASKFISK 743

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +V R+ I RDA RFHHF  G CSC D+W
Sbjct: 744 VVGREIIARDAHRFHHFVDGVCSCGDFW 771



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 186/360 (51%), Gaps = 6/360 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD  I+  ++ V + A+I  +V  +   EA   +  M+  G + + VT + LL    +P
Sbjct: 153 VFD-GIRDRNI-VSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNP 210

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L +G   H    K GL+L+  VG  L+ MY KCG +   + +FD++PEK ++TW  +I
Sbjct: 211 ELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLI 270

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GYAQ G     LEL  +M+   V P+ +T+  +L  C    A   G +V + I  +G+G
Sbjct: 271 AGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYG 330

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
              ++ NALI MY +CG LK+AR +F  +P + VV+WTA++ GY   G  + A+ LF  M
Sbjct: 331 REIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRM 390

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            + GI+PD   F S L++CS      +G      + +  G        + +V +  + G 
Sbjct: 391 QQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHA-GYSLDVYLQSALVSMYAKCGS 449

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
           +++A  L+ + + E +   W A++  C  H     A   F ++ K  ++P    +  +LS
Sbjct: 450 MDDA-RLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLS 508



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 184/394 (46%), Gaps = 44/394 (11%)

Query: 28  VSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNC 87
           + EA+ +   M  QG  + S     LL  C     L  G   H   +K G+  +  + N 
Sbjct: 77  LKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENT 136

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L++MY KCGS+   R++FD + ++ +++W AMI  +          + Y  MK  G  PD
Sbjct: 137 LLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPD 196

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
            VTFV +L++  +     VG +V  +I   G    P +  +L+ MYA+CG++ KA+ IFD
Sbjct: 197 KVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFD 256

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            +P K VV+WT +I GY   G  +VA++L ++M ++ + P+   + S+L  C+     + 
Sbjct: 257 KLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEH 316

Query: 268 GLE-YFYGMKNKYGLQ---------------------------PGPE--HYTCMVDLLGR 297
           G + + Y +++ YG +                           P  +   +T MV    +
Sbjct: 317 GKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQ 376

Query: 298 AGQLNEALELIESML---VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
            G  +EA++L   M    ++PD   + + L +C        A L  GK I  + ++ GY 
Sbjct: 377 LGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCS-----SPAFLQEGKSIHQQLVHAGYS 431

Query: 355 V------LLSNIYSEARNLDGIMRVRMMMRERRL 382
           +       L ++Y++  ++D    V   M ER +
Sbjct: 432 LDVYLQSALVSMYAKCGSMDDARLVFNQMSERNV 465


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/518 (43%), Positives = 318/518 (61%), Gaps = 13/518 (2%)

Query: 8    STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
            S+   V +N+LI+GY        A+ +F K+R   +  ++ TM+ ++P C     L  G 
Sbjct: 492  SSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGT 551

Query: 68   CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP-EKGLITWNAMISGYAQN 126
            C H + VK G + D  V N L+ MY KCGS+     LF++    K  +TWN +I+ Y QN
Sbjct: 552  CIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQN 611

Query: 127  GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
            G A   +  + +M+     P++VTFV VL + A+L A   G+     I   GF SN  + 
Sbjct: 612  GHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVG 671

Query: 187  NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
            N+LI+MYA+CG L  +  +F+ M  K  VSW A++ GY +HGHG+ A+ LF  M +S ++
Sbjct: 672  NSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQ 731

Query: 247  PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
             D  +FVSVLSAC H GL ++G + F+ M +KY ++P  EHY CMVDLLGRAG  +E L 
Sbjct: 732  IDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLG 791

Query: 307  LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366
             I+ M VEPD  VWGALLG+C++H NV+L E+A   ++KLEP N  ++V+LS+IY+++  
Sbjct: 792  FIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGR 851

Query: 367  LDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY----RMLDKLEN 422
                 + R  M +  LKK PG S+VELK +VH F VGD++H Q   ++     +L+K+E 
Sbjct: 852  WADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEK 911

Query: 423  LVQEHDGTKRSDQKNSEEHLNDTEV----HSEKLAIAFGIINTSPGTEIVVMKNLRICGD 478
            +    D  +    +N EE   D E+    HSE+LAI F ++NT PG+ I ++KNLR+C D
Sbjct: 912  IGYVPD--RSCVLQNVEE--EDKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCAD 967

Query: 479  CHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            CH   K +SKI  R+ IVRDATRFHHF+ G CSC DYW
Sbjct: 968  CHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 104/319 (32%), Positives = 167/319 (52%), Gaps = 3/319 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++A+I+  V      EA+SLF +M+ Q ++ N VT++ +LP C D   L LG   HC 
Sbjct: 396 VAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCF 455

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK  +D D S G  L++MY KCG        F+++  + ++TWN++I+GYAQ G   + 
Sbjct: 456 TVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNA 515

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           ++++ +++   + PDA T VGV+ +CA L     G  +   I   GF S+  + NALI+M
Sbjct: 516 IDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDM 575

Query: 193 YARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           YA+CG+L  A  +F+     K  V+W  II  Y  +GH + A+  F +M      P+   
Sbjct: 576 YAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVT 635

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           FVSVL A ++     +G+  F+    + G          ++D+  + GQL  + +L   M
Sbjct: 636 FVSVLPAAAYLAAFREGMA-FHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEM 694

Query: 312 LVEPDGAVWGALLGACKIH 330
               D   W A+L    +H
Sbjct: 695 -DHKDTVSWNAMLSGYAVH 712



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 149/326 (45%), Gaps = 3/326 (0%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+ +      V +  +++GY  N    E + LF KM+   V IN V+ +       + 
Sbjct: 285 VFDQMVDQD--DVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAET 342

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H   ++  +D D  V   LM MY KCG  +  ++LF  +  + L+ W+A+I
Sbjct: 343 IDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAII 402

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +   Q G     L L++EM++  + P+ VT + +L +CA L    +G  +          
Sbjct: 403 AALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMD 462

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S+     AL++MYA+CG    A   F+ M  + +V+W ++I GY   G    A+ +F ++
Sbjct: 463 SDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKL 522

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
             S I PD    V V+ AC+     D+G    +G+  K G +        ++D+  + G 
Sbjct: 523 RLSAINPDAGTMVGVVPACALLNDLDQG-TCIHGLIVKLGFESDCHVKNALIDMYAKCGS 581

Query: 301 LNEALELIESMLVEPDGAVWGALLGA 326
           L  A  L        D   W  ++ A
Sbjct: 582 LPSAEFLFNKTDFTKDEVTWNVIIAA 607



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/330 (30%), Positives = 161/330 (48%), Gaps = 18/330 (5%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLP-ICVD 59
           VFD+  K     V +NA+I+G   +    EAV  F  M+  GVE +SV++L L P IC  
Sbjct: 186 VFDKMPKRD--VVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKL 243

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
                + +C       F  D   +V N L+ +Y KCG VD  R++FDQ+ ++  ++W  M
Sbjct: 244 SN---IELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTM 300

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL-----GAHSVGLEVEQQI 174
           ++GYA NG    VLEL+ +MK   V  + V+ V    + A       G    G  ++Q+I
Sbjct: 301 MAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRI 360

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
            ++   + P     L+ MYA+CG  +KA+ +F G+  + +V+W+AII      G+ E A+
Sbjct: 361 DSDILVATP-----LMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEAL 415

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
            LF EM    ++P+    +S+L AC+   L   G +  +    K  +       T +V +
Sbjct: 416 SLFQEMQNQKMKPNRVTLMSILPACADLSLLKLG-KSIHCFTVKADMDSDLSTGTALVSM 474

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALL 324
             + G    AL     M    D   W +L+
Sbjct: 475 YAKCGFFTAALTTFNRM-SSRDIVTWNSLI 503



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 162/326 (49%), Gaps = 6/326 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD +   +   + +N++I  Y  +   +EA+ ++  M E+G+E +  T   +L  C   
Sbjct: 85  VFDSTPNPSR--ILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGA 142

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G+  H    + GL+ D  +G  L+ MY K G +   R++FD++P++ ++ WNAMI
Sbjct: 143 LNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMI 202

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +G +Q+      ++ +R M+ +GV P +V+ + +      L    +   +   +    F 
Sbjct: 203 AGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFS 262

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S   ++N LI++Y++CG++  AR +FD M  +  VSW  ++ GY  +G     ++LFD+M
Sbjct: 263 SA--VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKM 320

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
               +R +  + VS   A +     +KG E  +G   +  +       T ++ +  + G+
Sbjct: 321 KLGNVRINKVSAVSAFLAAAETIDLEKGKE-IHGCALQQRIDSDILVATPLMVMYAKCGE 379

Query: 301 LNEALELIESMLVEPDGAVWGALLGA 326
             +A +L    L   D   W A++ A
Sbjct: 380 TEKAKQLFWG-LQGRDLVAWSAIIAA 404



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 110/241 (45%), Gaps = 13/241 (5%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L +++ KC   D  R +FD  P    I WN+MI  Y ++      LE+Y  M   G+ PD
Sbjct: 72  LYSLFHKC---DLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPD 128

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
             TF  VL +C        G+    +I   G   + F+   L++MY++ G+LK+AR +FD
Sbjct: 129 KYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFD 188

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC---SHAGL 264
            MP++ VV+W A+I G         AV  F  M   G+ P   + +++       S+  L
Sbjct: 189 KMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIEL 248

Query: 265 TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
                 Y +       +  G      ++DL  + G ++ A  + + M V+ D   WG ++
Sbjct: 249 CRSIHGYVFRRDFSSAVSNG------LIDLYSKCGDVDVARRVFDQM-VDQDDVSWGTMM 301

Query: 325 G 325
            
Sbjct: 302 A 302



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 6/172 (3%)

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
           +LSSC HL      L++  QI  +GF  +  + + LIN+Y+       AR++FD  P  +
Sbjct: 38  LLSSCKHLNPL---LQIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTPNPS 93

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
            + W ++I  Y        A++++  M++ G+ PD   F  VL AC+ A    +G+ +F+
Sbjct: 94  RILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGV-WFH 152

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           G  ++ GL+        +VD+  + G L  A E+ + M  + D   W A++ 
Sbjct: 153 GEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKM-PKRDVVAWNAMIA 203


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/538 (40%), Positives = 314/538 (58%), Gaps = 41/538 (7%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPIC-VDPGYLWLGMCCHCIC 73
           + A+I G+ L  L  +A++ + +M  QGVE N+ T   +L +C ++PG        H   
Sbjct: 96  WTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCPIEPG-----KALHSQA 150

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT------------------ 115
           VK G D D  V   L+ +Y + G V   ++LFD +PEK L++                  
Sbjct: 151 VKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAAR 210

Query: 116 -------------WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162
                        WN MI GY QNG+    L L+R M      P+ VT + VLS+C  LG
Sbjct: 211 VLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLG 270

Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIG 222
           A   G  V   I+ NG   N  +  AL++MY++CG+L+ AR +FD +  K VV+W ++I 
Sbjct: 271 ALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIV 330

Query: 223 GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQ 282
           GY +HG  + A+QLF  M + G+ P    F+ +LSAC H+G   +G + F  MK++YG++
Sbjct: 331 GYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIE 390

Query: 283 PGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGK 342
           P  EHY CMV+LLGRAG + +A EL+++M +EPD  +WG LLGAC++H  + L E     
Sbjct: 391 PKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVEL 450

Query: 343 VIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMV 402
           ++     N+G Y+LLSNIY+   N DG+ R+R MM++  +KK+PG S +E+  +VH F+ 
Sbjct: 451 LVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLA 510

Query: 403 GDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGI 458
           G  NH +  EIY ML+++   ++ H  T ++D         E     EVHSEKLAIAFG+
Sbjct: 511 GGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGL 570

Query: 459 INTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           INT PGT I ++KNLR+C DCH   KL+SKI  R+ +VRD  RFHHF +G CSC DYW
Sbjct: 571 INTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 628



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 133/241 (55%), Gaps = 4/241 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           VC+N +I GY  N + +EA+ LF +M +   + N VT+L +L  C   G L  G   H  
Sbjct: 222 VCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSY 281

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               G+  +  VG  L+ MY KCGS++  R +FD++ +K ++ WN+MI GYA +G +   
Sbjct: 282 IENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEA 341

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           L+L++ M  +G+ P  +TF+G+LS+C H G  + G ++  +++ + +G  P + +   ++
Sbjct: 342 LQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMK-DEYGIEPKIEHYGCMV 400

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           N+  R G++++A  +   M      V W  ++G   +HG   +  ++ + ++   +   G
Sbjct: 401 NLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSG 460

Query: 250 T 250
           T
Sbjct: 461 T 461



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 139/322 (43%), Gaps = 39/322 (12%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H +  + GLD    +   L   Y   G +DY   LF +     +  W A+I G+A  GL 
Sbjct: 50  HAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLH 109

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              L  Y +M + GV P+A TF  +L  C        G  +  Q    GF S+ ++   L
Sbjct: 110 EQALNFYAQMLTQGVEPNAFTFSSILKLC----PIEPGKALHSQAVKLGFDSDLYVRTGL 165

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD----------- 238
           +++YAR G++  A+ +FD MP K++VS TA++  Y  HG  + A  LFD           
Sbjct: 166 LDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWN 225

Query: 239 --------------------EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278
                                MLK+  +P+    +SVLSAC   G  + G  + +     
Sbjct: 226 VMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESG-RWVHSYIEN 284

Query: 279 YGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAEL 338
            G+Q      T +VD+  + G L +A  L+   + + D   W +++    +H   + A  
Sbjct: 285 NGIQFNVHVGTALVDMYSKCGSLEDA-RLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQ 343

Query: 339 AFGKVIK--LEPMNTGYYVLLS 358
            F  + +  L P N  +  +LS
Sbjct: 344 LFKSMCRMGLHPTNITFIGILS 365



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 5/144 (3%)

Query: 168 LEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH 227
           L++   +  +G   +P LN  L   YA  G L  + A+F      +V  WTAII G+ + 
Sbjct: 47  LQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALR 106

Query: 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH 287
           G  E A+  + +ML  G+ P+   F S+L  C      + G +  +    K G       
Sbjct: 107 GLHEQALNFYAQMLTQGVEPNAFTFSSILKLCP----IEPG-KALHSQAVKLGFDSDLYV 161

Query: 288 YTCMVDLLGRAGQLNEALELIESM 311
            T ++D+  R G +  A +L ++M
Sbjct: 162 RTGLLDVYARGGDVVSAQQLFDTM 185


>gi|115487662|ref|NP_001066318.1| Os12g0181900 [Oryza sativa Japonica Group]
 gi|77553160|gb|ABA95956.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648825|dbj|BAF29337.1| Os12g0181900 [Oryza sativa Japonica Group]
 gi|125578708|gb|EAZ19854.1| hypothetical protein OsJ_35439 [Oryza sativa Japonica Group]
          Length = 584

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/522 (44%), Positives = 320/522 (61%), Gaps = 15/522 (2%)

Query: 10  HLTVCYNALISGYVLNSLVS---------EAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           HL    +     ++L+SL           EA++ +G++    +  +S         C D 
Sbjct: 63  HLLAASHPACDSFLLSSLARAAAHRGLPGEAIAFYGRLLAAALPFSSFAFTAAAKACADL 122

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  GM  H   V  G   D  V   L+ +Y KCG +   RKLFD + ++ ++ WNAMI
Sbjct: 123 SALRTGMAVHAHSVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMI 182

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGY QNGLA   +E+YREM+   V PD+ TFV  LS+CA  GA  +G EVE++I ++   
Sbjct: 183 SGYEQNGLAERAIEVYREMQVAQVVPDSATFVATLSACAQAGALDLGREVERRIVSDQMD 242

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            + FL +AL+NMYARCG + KAR  FD +  + VV+WT++I GYG+HGHG  A++LF  M
Sbjct: 243 VSVFLGSALVNMYARCGLVSKARDWFDRLQERNVVTWTSMIAGYGMHGHGREAIKLFHLM 302

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            + G  P+   FV+VL+AC+HAGL ++G   F  MK  YGL P  EHY  MVD+ GRAG 
Sbjct: 303 RREGPTPNDVTFVAVLAACAHAGLVNEGRNAFDSMKRVYGLVPRAEHYCSMVDMYGRAGL 362

Query: 301 LNEALELI-ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
           L++A++ I +S+  EP   VW A+LGACK+HKN  L      ++I LEP N  + VLLSN
Sbjct: 363 LDDAMQFICDSIPEEPGPEVWTAMLGACKMHKNFNLGVEVAERLIALEPENPSHRVLLSN 422

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
           IY+ +  ++ + +VR +M +RRLKK  GYS +EL G  HLF +G+++H QT EIYR L++
Sbjct: 423 IYALSGKMNHVEKVRNVMIKRRLKKQIGYSLIELGGTSHLFRMGEKSHQQTREIYRYLEE 482

Query: 420 LENLVQEHDGTKRSDQKNSEEHLNDTEV----HSEKLAIAFGIINTSPGT-EIVVMKNLR 474
           L + + +      +D    E    + EV    HSEKLA+A+G++ +S  T  I V+KNLR
Sbjct: 483 LIHRISDAGYVPETDSVLHELEEEEREVALRYHSEKLAVAYGLMMSSGSTAPIRVIKNLR 542

Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           ICGDCHL IK +S +  R+ IVRD  RFHHFK G CSC +YW
Sbjct: 543 ICGDCHLAIKFMSSVESREIIVRDKHRFHHFKDGKCSCLEYW 584


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/551 (40%), Positives = 326/551 (59%), Gaps = 37/551 (6%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD S K     V +N +ISGY  +    E++ LF +M    V  +S+T++ +L  C   
Sbjct: 176 VFDRSSKGD--VVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKL 233

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVD--------------------- 99
             L +G   H       ++    + N L+ MY  CG +D                     
Sbjct: 234 KDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIV 293

Query: 100 ----------YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
                       R  FD++PE+  ++W AMI GY Q      VL L+REM++  + PD  
Sbjct: 294 TGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEF 353

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
           T V +L++CAHLGA  +G  ++  I  N    + F+ NALI+MY  CGN++KA  IF+ M
Sbjct: 354 TMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAM 413

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
           P +  +SWTA+I G  I+G+GE A+ +F +MLK+ I PD    + VL AC+H+G+ DKG 
Sbjct: 414 PHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGK 473

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
           ++F  M  ++G++P   HY CMVDLLGRAG L EA E+I++M V+P+  VWG+LLGAC++
Sbjct: 474 KFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRV 533

Query: 330 HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYS 389
           H++ E+AE+A  ++++LEP N   YVLL NIY+     + +  VR +M +R +KK PG S
Sbjct: 534 HRDEEMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCS 593

Query: 390 YVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ----EHDGTKRSDQKNSEEHLNDT 445
            +E+ G VH F+ GD+ H Q+ EIY  LD++   ++      D ++       EE  +  
Sbjct: 594 LIEMNGSVHEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKESAV 653

Query: 446 EVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHF 505
             HSEKLAIAFG+I++ PG  I ++KNLR+C DCH   KLVSK+ +R+ IVRD TRFHHF
Sbjct: 654 YRHSEKLAIAFGLISSGPGVTIRIVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFHHF 713

Query: 506 KSGFCSCKDYW 516
           + G CSCKDYW
Sbjct: 714 RHGSCSCKDYW 724



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 109/376 (28%), Positives = 175/376 (46%), Gaps = 35/376 (9%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD      H    +N +I GY      + AVS++ +M E+GV  +  T   LL      
Sbjct: 75  VFDTMPGPNHFV--WNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRD 132

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             +  G   H   VK G   +  V N L+ +Y   G V   R +FD+  +  ++TWN MI
Sbjct: 133 TAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMI 192

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGY ++      ++L+ EM+ + V P ++T V VLS+C+ L   +VG  V + ++     
Sbjct: 193 SGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIE 252

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYG--------------- 225
               L NALI+MYA CG++  A  IFD M  + V+SWTAI+ G+                
Sbjct: 253 PVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKM 312

Query: 226 -----------IHGHGEV-----AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
                      I G+ +V      + LF EM  + I+PD    VS+L+AC+H G  + G 
Sbjct: 313 PERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELG- 371

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
           E+     +K  ++        ++D+    G + +A+ +  +M    D   W A++    I
Sbjct: 372 EWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAM-PHRDKISWTAVIFGLAI 430

Query: 330 HKNVELAELAFGKVIK 345
           +   E A   F +++K
Sbjct: 431 NGYGEEALDMFSQMLK 446



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 119/248 (47%), Gaps = 2/248 (0%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
           G ++Y R +FD +P      WN MI GY++ G     + +Y EM   GV PD  T+  +L
Sbjct: 67  GDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLL 126

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
                  A   G E+   I   GF SN F+ NALI++Y+  G +  AR +FD   +  VV
Sbjct: 127 KRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVV 186

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           +W  +I GY      + +++LFDEM +  + P     VSVLSACS     + G      +
Sbjct: 187 TWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYV 246

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVEL 335
           K+   ++P       ++D+    G ++ AL + ++M    D   W A++        V L
Sbjct: 247 KD-LKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSR-DVISWTAIVTGFTNLGQVGL 304

Query: 336 AELAFGKV 343
           A   F K+
Sbjct: 305 ARNYFDKM 312


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/508 (41%), Positives = 325/508 (63%), Gaps = 5/508 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + ++ISGY  N    EA+ +F +MR+  V  + + ++ +L    D   L  G   H  
Sbjct: 240 VSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGC 299

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K GL+ +F +   L ++Y KCG V   R  F+QV    LI WNAMISGY +NG A   
Sbjct: 300 VIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEA 359

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           +EL+R MKS  + PD++T    +++CA +G+  +   +++ I  + F ++  +N +LI+ 
Sbjct: 360 IELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDT 419

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG++  AR +FD +P K VV W+A++ GYG+HG G  ++ LF  M ++G+ P+   F
Sbjct: 420 YAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTF 479

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           V +L+AC ++GL ++G + F+ M++ YG++P  +HY C+VDLLGRAG L+ A   + +M 
Sbjct: 480 VGLLTACKNSGLVEEGWDLFHRMRD-YGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMP 538

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           +EP  +VWGALL ACKIH++V L E A  ++  L+P NTG+YV LSN+Y+ +   D + +
Sbjct: 539 IEPGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAK 598

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR++MRE+ L K  GYS +E+ G++  F  GD+ H ++ EI+  ++ LE  ++E      
Sbjct: 599 VRVLMREKGLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDLERRLKEAGFVPH 658

Query: 433 SDQKNSEEHLNDTEV----HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
           ++    + +  +TE     HSE+LAIA+G+I+T PGT + + KNLR C +CH  IKL+SK
Sbjct: 659 TESVLHDLNYEETEETLCNHSERLAIAYGLISTPPGTTLRITKNLRACDNCHAAIKLISK 718

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +V R+ +VRDA RFHHFK G CSC DYW
Sbjct: 719 LVSREIVVRDACRFHHFKDGACSCGDYW 746



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 126/230 (54%), Gaps = 2/230 (0%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
           G V   RKLFD+ P+  +  WNA++  Y+++G   H +E+Y  M+   V PD  +F  VL
Sbjct: 121 GEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVL 180

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
            +C+ L A  +G  V  QI  +GF S+ F+ N L+ +YA+CG + +A A+F  +  +T+V
Sbjct: 181 KACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIV 240

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           SWT+II GY  +G    A+++F EM K+ +RPD  A VSVL A +     + G +  +G 
Sbjct: 241 SWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHG-KSIHGC 299

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
             K GL+   +    +  L  + G +  A  L  + +  P    W A++ 
Sbjct: 300 VIKMGLECEFDLLISLTSLYAKCGHVMVA-RLFFNQVENPSLIFWNAMIS 348



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 149/319 (46%), Gaps = 8/319 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NA++  Y  +     A+ ++ +M+   V  +  +  C+L  C     L +G   H    
Sbjct: 141 WNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIF 200

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           + G + D  V N L+ +Y KCG +     +F ++ ++ +++W ++ISGYAQNG     L 
Sbjct: 201 RHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALR 260

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           ++ EM+   V PD +  V VL +   +     G  +   +   G      L  +L ++YA
Sbjct: 261 IFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYA 320

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG++  AR  F+ +   +++ W A+I GY  +G+ E A++LF  M    IRPD     S
Sbjct: 321 KCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTS 380

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY---TCMVDLLGRAGQLNEALELIESM 311
            ++AC+  G     LE    M     +          T ++D   + G ++ A   +   
Sbjct: 381 SIAACAQIG----SLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMA-RFVFDR 435

Query: 312 LVEPDGAVWGALLGACKIH 330
           + + D  VW A++    +H
Sbjct: 436 IPDKDVVVWSAMMVGYGLH 454



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 84/209 (40%), Gaps = 38/209 (18%)

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
           ++  ++   G     FL   L+N  +  G +  AR +FD  P   V  W AI+  Y  HG
Sbjct: 93  QIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHG 152

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS-----HAGLTDKGLEYFYGMKNKYGLQP 283
               A++++  M  + + PDG +F  VL ACS       G    G  + +G ++   +Q 
Sbjct: 153 FFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQN 212

Query: 284 G-------------------------PEHYTCMVDLLGRAGQLNEALELIESML---VEP 315
           G                            +T ++    + GQ  EAL +   M    V P
Sbjct: 213 GLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRP 272

Query: 316 DGAVWGALLGACKIHKNVELAELAFGKVI 344
           D   W AL+   + + +VE  +L  GK I
Sbjct: 273 D---WIALVSVLRAYTDVE--DLEHGKSI 296


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/524 (43%), Positives = 317/524 (60%), Gaps = 23/524 (4%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+I+GY       EA+ +F +M + G   N VT++ LL  CV  G L  G   HC 
Sbjct: 466 VTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCY 525

Query: 73  CVKFGLDLD--------FSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG--LITWNAMISG 122
            +KF L+LD          V N L+ MY KC S +  RK+FD V  K   ++TW  MI G
Sbjct: 526 AIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGG 585

Query: 123 YAQNGLATHVLELYREMKSL--GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           YAQ+G A + L+L+  M  +   + P+  T    L +CA L A   G +V   +  N +G
Sbjct: 586 YAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYG 645

Query: 181 S-NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
           S   F+ N LI+MY++ G++  A+ +FD MP++  VSWT+++ GYG+HG GE A+++FDE
Sbjct: 646 SVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDE 705

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M K  + PDG  F+ VL ACSH+G+ D G+ +F  M   +G+ PGPEHY CMVDL GRAG
Sbjct: 706 MRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAG 765

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
           +L EA++LI  M +EP   VW ALL AC++H NVEL E A  ++++LE  N G Y LLSN
Sbjct: 766 RLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLLELESGNDGSYTLLSN 825

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
           IY+ AR    + R+R  M+   +KK PG S+++ +  V  F VGDR+H Q+ +IY   + 
Sbjct: 826 IYANARRWKDVARIRYTMKRTGIKKRPGCSWIQGRKGVATFYVGDRSHPQSQQIY---ET 882

Query: 420 LENLVQEHDGTKRSDQKNSEEHLNDTE-------VHSEKLAIAFGIINTSPGTEIVVMKN 472
           L +L+Q         Q +   H  D E        HSEKLA+A+GI+   P   I + KN
Sbjct: 883 LADLIQRIKAIGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTLHPRAPIRITKN 942

Query: 473 LRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           LRICGDCH  I  +SKI++ + I+RD++RFHHFK+G CSCK YW
Sbjct: 943 LRICGDCHSAITYISKIIEHEIILRDSSRFHHFKNGSCSCKGYW 986



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 185/394 (46%), Gaps = 51/394 (12%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGV-EINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +N+++S Y+  S  + A++LF KM  + +   + ++++ +LP C        G   H 
Sbjct: 329 VSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHG 388

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM------------ 119
             ++ GL  D  VGN ++ MY KCG ++   K+F ++  K +++WNAM            
Sbjct: 389 FSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEH 448

Query: 120 -----------------------ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS 156
                                  I+GYAQ G     L+++R+M   G  P+ VT V +LS
Sbjct: 449 ALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLS 508

Query: 157 SCAHLGAHSVGLEVE---QQIQANGFGSNPFLN-----NALINMYARCGNLKKARAIFDG 208
           +C  +GA   G E      +   N  G +P  +     N LI+MYA+C + + AR +FD 
Sbjct: 509 ACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDS 568

Query: 209 MPRK--TVVSWTAIIGGYGIHGHGEVAVQLFDEMLK--SGIRPDGTAFVSVLSACSHAGL 264
           +  K   VV+WT +IGGY  HG    A+QLF  M K    I+P+       L AC+    
Sbjct: 569 VSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAA 628

Query: 265 TDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGAL 323
              G + + Y ++N YG         C++D+  ++G ++ A  + ++M  + +   W +L
Sbjct: 629 LRFGRQVHAYVLRNFYG-SVMLFVANCLIDMYSKSGDVDTAQIVFDNM-PQRNAVSWTSL 686

Query: 324 LGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
           +    +H   E A   F ++ K+  +  G   L+
Sbjct: 687 MTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLV 720



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 167/382 (43%), Gaps = 51/382 (13%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N LI   +      +  +L+ +M+  G   +  T   +   C +   L LG   H    
Sbjct: 227 WNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVS 286

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG---LITWNAMISGYAQNGLATH 131
           + G   +  V N +++MY KCG++ +   +FD +  +G   L++WN+++S Y     A  
Sbjct: 287 RSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANT 346

Query: 132 VLELYREMKSLGV-CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
            L L+ +M +  +  PD ++ V +L +CA L A   G +V      +G   + F+ NA++
Sbjct: 347 ALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVV 406

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVS---------------------------------- 216
           +MYA+CG +++A  +F  M  K VVS                                  
Sbjct: 407 DMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVV 466

Query: 217 -WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYG 274
            WTA+I GY   G G  A+ +F +M   G RP+    VS+LSAC   G    G E + Y 
Sbjct: 467 TWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYA 526

Query: 275 MK---NKYGLQPGPEHYTC---MVDLLGRAGQLNEALELIESMLVEP---DGAVWGALLG 325
           +K   N  G  PG +       ++D+  +      A ++ +S  V P   D   W  ++G
Sbjct: 527 IKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDS--VSPKDRDVVTWTVMIG 584

Query: 326 ACKIHKNVELAELAFGKVIKLE 347
               H +   A   F  + K++
Sbjct: 585 GYAQHGDANNALQLFSGMFKMD 606



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 126/251 (50%), Gaps = 8/251 (3%)

Query: 80  LDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK--GLITWNAMISGYAQNGLATHVLELYR 137
           L F +   L+  Y+   S  Y   L +++P     +  WN +I      G    V  LYR
Sbjct: 189 LLFHLATNLIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYR 248

Query: 138 EMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG 197
           +MKSLG  PD  TF  V  +CA+L + S+G  +   +  +GF SN F+ NA+++MY +CG
Sbjct: 249 QMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCG 308

Query: 198 NLKKARAIFDGMPRKTV---VSWTAIIGGYGIHGHGEVAVQLFDEM-LKSGIRPDGTAFV 253
            L+ A  +FD +  + +   VSW +++  Y        A+ LF +M  +  + PD  + V
Sbjct: 309 ALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLV 368

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           ++L AC+    + +G +  +G   + GL         +VD+  + G++ EA ++ + M  
Sbjct: 369 NILPACASLAASLRGRQ-VHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKF 427

Query: 314 EPDGAVWGALL 324
           + D   W A++
Sbjct: 428 K-DVVSWNAMV 437



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 128/257 (49%), Gaps = 9/257 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM--REQGVEINSVTMLCLLPICV 58
           +FD         V +  +I GY  +   + A+ LF  M   ++ ++ N  T+ C L  C 
Sbjct: 565 MFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACA 624

Query: 59  DPGYLWLGMCCHCICVK--FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
               L  G   H   ++  +G  + F V NCL+ MY K G VD  + +FD +P++  ++W
Sbjct: 625 RLAALRFGRQVHAYVLRNFYGSVMLF-VANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSW 683

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
            ++++GY  +G     L ++ EM+ + + PD +TF+ VL +C+H G    G+    ++  
Sbjct: 684 TSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSK 743

Query: 177 NGFGSNPFLNN--ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVA 233
           + FG +P   +   +++++ R G L +A  + + MP   T V W A++    +H + E+ 
Sbjct: 744 D-FGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELG 802

Query: 234 VQLFDEMLKSGIRPDGT 250
               + +L+     DG+
Sbjct: 803 EFAANRLLELESGNDGS 819


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/539 (40%), Positives = 319/539 (59%), Gaps = 39/539 (7%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NA+I G+  +    +A   + + + QG+  +++T   L+  C     + +G   H   +
Sbjct: 87  FNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHII 146

Query: 75  KFGLDLDFSVGNCLMTMYV-------------------------------KCGSVDYGRK 103
           K G + D  V N L+ MY                                KCG V+  RK
Sbjct: 147 KHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARK 206

Query: 104 LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163
           LFDQ+PEK L+TW+ MISGYAQN      +EL++ ++S GV  +    V V+SSCAHLGA
Sbjct: 207 LFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGA 266

Query: 164 HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGG 223
             +G      +  NG   N  L  AL++MYARCG++ KA  +F+ +P +  +SWTA+I G
Sbjct: 267 LELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAG 326

Query: 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP 283
             +HG+ E +++ F  M+++G+ P    F +VLSACSH GL ++G + F  MK  + ++P
Sbjct: 327 LAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEP 386

Query: 284 GPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
             EHY CMVDLLGRAG+L EA   +  M V+P+  VWGALLGAC+IHKN E+ E     +
Sbjct: 387 RLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKIL 446

Query: 344 IKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVG 403
           I+L P ++GYYVLLSNIY+ A+  + +  +R MM+ + LKK PG+S +EL GRVH F +G
Sbjct: 447 IQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVHKFTIG 506

Query: 404 DRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNS------EEHLNDTEVHSEKLAIAFG 457
           D +H +  +I RM +++  L++      R +  ++      EE  +    HSEKLAIAFG
Sbjct: 507 DSSHPEMDKIERMWEEI--LMRIRAAGYRGNTADALFDIDEEEKESALHRHSEKLAIAFG 564

Query: 458 IINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           ++ +  GT I ++KNLR+C DCH   KL+SK+  R+ IVRD  RFHHF+ G CSC DYW
Sbjct: 565 MMRSEAGTPIRIVKNLRVCEDCHTATKLISKVFGRELIVRDRNRFHHFRQGLCSCMDYW 623



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 152/294 (51%), Gaps = 10/294 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++ +ISGY  N+   +AV LF  ++ QGV  N   M+ ++  C   G L LG   H  
Sbjct: 217 VTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDY 276

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK G+ L+  +G  L+ MY +CGS+D    +F+ +PE+  ++W A+I+G A +G +   
Sbjct: 277 VVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERS 336

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           L+ +  M   G+ P  +TF  VLS+C+H G    G ++ + ++ +     P L +   ++
Sbjct: 337 LKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRD-HRVEPRLEHYGCMV 395

Query: 191 NMYARCGNLKKARAIFDGMPRK-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++  R G L++A      MP K     W A++G   IH + E+  ++   +++  + P  
Sbjct: 396 DLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQ--LLPQH 453

Query: 250 TAFVSVLSAC-SHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
           + +  +LS   ++A   +K  E    MK K GL+  P H   +++L GR  +  
Sbjct: 454 SGYYVLLSNIYANAKEWEKVTEMRQMMKAK-GLKKPPGH--SLIELDGRVHKFT 504



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 136/294 (46%), Gaps = 35/294 (11%)

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
           +DY  ++F Q+    L  +NAMI G++ +         Y + +  G+ PD +TF  ++ S
Sbjct: 69  IDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKS 128

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
           C  L   S+G +    I  +GF  + ++ N+L++MYA  G+ + A  IF  M    VVSW
Sbjct: 129 CTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSW 188

Query: 218 TA-------------------------------IIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           T+                               +I GY  + H + AV+LF  +   G+R
Sbjct: 189 TSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVR 248

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
            + T  VSV+S+C+H G  + G E  +    K G+       T +VD+  R G +++A+ 
Sbjct: 249 ANETVMVSVISSCAHLGALELG-ERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVW 307

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
           + E  L E D   W AL+    +H   E +   F  +++  L P +  +  +LS
Sbjct: 308 VFED-LPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLS 360


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/507 (43%), Positives = 316/507 (62%), Gaps = 6/507 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N +I GY  +     A+ L+ +M    +E ++ T   LL        +  G   H I +
Sbjct: 108 WNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAI 167

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           + G +    V N L+ MY  CG  +   KLF+ + E+ L+TWN++I+GYA NG     L 
Sbjct: 168 RNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALT 227

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+REM   GV PD  T V +LS+CA LGA ++G      +   G   N    NAL+++YA
Sbjct: 228 LFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYA 287

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG++++A  +FD M  K+VVSWT++I G  ++G G+ A++LF E+ + G+ P    FV 
Sbjct: 288 KCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVG 347

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VL ACSH G+ D+G +YF  MK +YG+ P  EHY CMVDLLGRAG + +A E I++M ++
Sbjct: 348 VLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQ 407

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
           P+  VW  LLGAC IH ++ L E+A  ++++LEP ++G YVLLSN+Y+  +    + +VR
Sbjct: 408 PNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVR 467

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ-----EHDG 429
             M    +KK PG+S VEL+ R+H F++GDR+H QT EIY  L ++  L++      H  
Sbjct: 468 RTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHIS 527

Query: 430 TKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKI 489
              +D +  EE       HSEK+AIAF +INT+ G  I V+KNLR+C DCHL IKL+SK+
Sbjct: 528 NVLADIEE-EEKETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIKLISKV 586

Query: 490 VDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DR+ +VRD +RFHHFK G CSCKDYW
Sbjct: 587 FDREIVVRDRSRFHHFKDGHCSCKDYW 613



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 133/227 (58%), Gaps = 7/227 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++I+GY LN   +EA++LF +M  +GVE +  TM+ LL  C + G L LG   H  
Sbjct: 207 VTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVY 266

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK GLD +   GN L+ +Y KCGS+    K+FD++ EK +++W ++I G A NG     
Sbjct: 267 MVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEA 326

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           LEL++E++  G+ P  +TFVGVL +C+H G    G +  ++++   +G  P + +   ++
Sbjct: 327 LELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEE-YGIVPKIEHYGCMV 385

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGH---GEVA 233
           ++  R G +K+A      MP +   V W  ++G   IHGH   GEVA
Sbjct: 386 DLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVA 432



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/275 (32%), Positives = 136/275 (49%), Gaps = 12/275 (4%)

Query: 70  HCICVKFGLDL-DFSVGNCLM-TMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
           H   ++ G+ L +  +G  L+ T+   C  + Y  ++F Q+    + TWN MI GYA++ 
Sbjct: 60  HAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESE 119

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
                LELYR+M    + PD  T+  +L + A L     G +V      NGF S  F+ N
Sbjct: 120 NPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQN 179

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
            L++MYA CG+ + A  +F+ M  + +V+W ++I GY ++G    A+ LF EM   G+ P
Sbjct: 180 TLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEP 239

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           DG   VS+LSAC+  G    G      M  K GL         ++DL  + G + +A ++
Sbjct: 240 DGFTMVSLLSACAELGALALGRRAHVYMV-KVGLDGNLHAGNALLDLYAKCGSIRQAHKV 298

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFGK 342
            + M  E     W +L+        V LA   FGK
Sbjct: 299 FDEM-EEKSVVSWTSLI--------VGLAVNGFGK 324


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/509 (42%), Positives = 324/509 (63%), Gaps = 10/509 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NA+ISGY  N   +EA+ +  +MR +GV+++++T+  +LP+C   G +  G   H   +
Sbjct: 63  WNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVI 122

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K GL+ +  V N L+ MY K GS+ + +K+F  +  K +++WN +I+GYAQNGLA+  +E
Sbjct: 123 KHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLI-KDVVSWNTLITGYAQNGLASEAIE 181

Query: 135 LYREMKS-LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
           +Y  M+    + P+  T+V +L + +H+GA   G+ +  Q+  N   S+ F+   LI+MY
Sbjct: 182 VYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMY 241

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
            +CG L  A ++F  +PRK  V W A+I  YG+HG GE A++LF EM    ++PD   FV
Sbjct: 242 GKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFV 301

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           S+LSACSH+GL       F  M+ +YG++P  +HY CMVDL GRAG+L  A   I+ M +
Sbjct: 302 SLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPI 361

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
           +PD + WGALL AC+IH N+EL + A  ++ +++  N GYYVLLSNIY+     +G+  V
Sbjct: 362 QPDASAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWEGVDDV 421

Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLEN------LVQEH 427
           R + R+R L+K+PG+S + L  +V +F  G++ H +  EIYR L  L +       V + 
Sbjct: 422 RSLARDRGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEEIYRELRDLTSKIKTIGYVPDF 481

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
               +  +++ +EH+     HSE+LAIA+GII+TSP T I + KNLR+CGDCH   K +S
Sbjct: 482 CFVLQDVEEDEKEHI--LMGHSERLAIAYGIISTSPKTPIRIFKNLRVCGDCHTVTKFIS 539

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            I +R+ IVRD++RFHHFK G CSC DYW
Sbjct: 540 IITEREIIVRDSSRFHHFKGGTCSCGDYW 568



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 110/332 (33%), Positives = 167/332 (50%), Gaps = 6/332 (1%)

Query: 55  PICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLI 114
           P+    G L  G   HC+ +K G + D  V   L+ MY + G V   RKLFD +P +   
Sbjct: 2   PVVKACGDLLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRG 61

Query: 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
           +WNAMISGY QNG A   L++  EM+  GV  DA+T   VL  CA +G    G  +   +
Sbjct: 62  SWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYV 121

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
             +G     F++NALINMYA+ G+L  A+ +F G+  K VVSW  +I GY  +G    A+
Sbjct: 122 IKHGLEFELFVSNALINMYAKFGSLGHAQKVF-GLLIKDVVSWNTLITGYAQNGLASEAI 180

Query: 235 QLFDEMLK-SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293
           +++  M +   I P+   +VS+L A SH G   +G+   +G   K  L       TC++D
Sbjct: 181 EVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMR-IHGQVIKNCLYSDVFVGTCLID 239

Query: 294 LLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG--KVIKLEPMNT 351
           + G+ G+L++A+ L    +   +   W A++    +H + E A   F   K  +++P + 
Sbjct: 240 MYGKCGKLDDAISLF-YQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHI 298

Query: 352 GYYVLLSNIYSEARNLDGIMRVRMMMRERRLK 383
            +  LLS         D      MM  E  +K
Sbjct: 299 TFVSLLSACSHSGLVSDAQWCFNMMEEEYGIK 330



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 119/225 (52%), Gaps = 5/225 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
            V +N LI+GY  N L SEA+ ++  M E + +  N  T + +LP     G L  GM  H
Sbjct: 160 VVSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIH 219

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
              +K  L  D  VG CL+ MY KCG +D    LF QVP K  + WNAMIS Y  +G   
Sbjct: 220 GQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGE 279

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--A 188
             LEL+REMK+  V PD +TFV +LS+C+H G  S        ++   +G  P L +   
Sbjct: 280 KALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEE-YGIKPSLKHYGC 338

Query: 189 LINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEV 232
           +++++ R G L+ A      MP +    +W A++    IHG+ E+
Sbjct: 339 MVDLFGRAGELEMAFNFIKKMPIQPDASAWGALLNACRIHGNIEL 383


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/525 (42%), Positives = 316/525 (60%), Gaps = 14/525 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  K       +N ++ GYV N +  +AVS++GKMR  GV  +  T   ++  C + 
Sbjct: 91  LFDEMHKPR--PFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVIKACAEL 148

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             LW G+  H   VK GL+   +V   LM MYVK G +     LF  + E+ L+ WNA+I
Sbjct: 149 AELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLVAWNALI 208

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +   Q G ++  L+ +REM   G+ PD+VT V  LS+C HLG    G E+ +  +  G  
Sbjct: 209 AVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFAREEGID 268

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           SN  ++NA ++M A+CG++ KA  +FD MP++ V+SW+ +IGGY ++G  E A+ LF  M
Sbjct: 269 SNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKALALFSRM 328

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM--KNKYGLQPGPEHYTCMVDLLGRA 298
              G++P+   F++VLSACSH G  ++G +YF  M   +   +QP  EHY CMVDLLGR+
Sbjct: 329 KNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKEHYACMVDLLGRS 388

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           G L EA   I+ M +E D  +WGALLGAC IH+N++L +     + +L P    Y+VLLS
Sbjct: 389 GHLEEAYNFIKIMPIEADPGIWGALLGACAIHQNIKLGQHVADLLFELAPEIASYHVLLS 448

Query: 359 NIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD 418
           N+Y+ A     + +VR  M+++  +K   YS VE  G +H+   GD++H Q+  I   L 
Sbjct: 449 NMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFNGEIHILYGGDKSHPQSASI---LA 505

Query: 419 KLENLVQEHDGTKRSDQKNS-------EEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMK 471
           KLE+L+++        + +S       EE  +    HSEKLAIAF +IN SP   I VMK
Sbjct: 506 KLEDLLKQMKSMGYIPETDSVFHDVEDEEKESTLSTHSEKLAIAFSLINGSPKFPIRVMK 565

Query: 472 NLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           NLRICGDCH F KLVS+I  R+ I+RD  RFHHFK+G CSCKD+W
Sbjct: 566 NLRICGDCHTFCKLVSRITMREIIMRDKNRFHHFKNGICSCKDFW 610



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 140/309 (45%), Gaps = 12/309 (3%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
           G + Y R+LFD++ +     WN ++ GY +NG+    + +Y +M+ LGV PD  TF  V+
Sbjct: 83  GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVI 142

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
            +CA L     GL +   +  +G      +   L+ MY + G L  A  +F  M  + +V
Sbjct: 143 KACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLV 202

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           +W A+I      G    A+Q F EM  +GI+PD    VS LSAC H G  + G E  Y  
Sbjct: 203 AWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETG-EEIYEF 261

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAV--WGALLGACKIHKNV 333
             + G+      +   +D+  + G +++A+ L + M   P   V  W  ++G   ++   
Sbjct: 262 AREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEM---PQRNVISWSTVIGGYAVNGES 318

Query: 334 ELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSY- 390
           E A   F ++    ++P    +  +LS      R  +G      M +       P   + 
Sbjct: 319 EKALALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKEHY 378

Query: 391 ---VELKGR 396
              V+L GR
Sbjct: 379 ACMVDLLGR 387


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/511 (43%), Positives = 309/511 (60%), Gaps = 7/511 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGY-LWLGMCCHC 71
           V +NA+ISGY  +  V EA++ F +MR   V  N  TML +L  C   G  L LG     
Sbjct: 226 VSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRS 285

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                GL  +  + N L+ MYVKCG ++    LF+++ +K +++WN MI GY        
Sbjct: 286 WIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKE 345

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN--GFGSNPFLNNAL 189
            L L+R M    + P+ VTF+ +L +CA+LGA  +G  V   +  N     +   L  +L
Sbjct: 346 ALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSL 405

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           I+MYA+CG+L  A+ IFD M  K++ +W A+I G+ +HGH + A+ LF  M   G  PD 
Sbjct: 406 IDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDD 465

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
             FV VL+AC HAGL   G  YF  M   Y + P   HY CM+DL GRAG  +EA  L++
Sbjct: 466 ITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVK 525

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDG 369
           +M ++PDGA+W +LLGAC+IH+ +ELAE     + +LEP N   YVLLSNIY+ A   + 
Sbjct: 526 NMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAGAGRWED 585

Query: 370 IMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH-- 427
           + ++R  + + R+KK PG S +E+   VH F+VGD+ H Q+ EIY+MLD+++  +++   
Sbjct: 586 VAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSNEIYKMLDEIDMRLEKAGF 645

Query: 428 --DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
             D ++     + E        HSEKLAIAFG+I+T PGT I +MKNLR+CG+CH   KL
Sbjct: 646 VPDTSEVLYDMDEEWKEGVLSHHSEKLAIAFGLISTKPGTTIRIMKNLRVCGNCHSATKL 705

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +SKI +R+ I RD  RFHHFK G CSCKDYW
Sbjct: 706 ISKIFNREIIARDRNRFHHFKDGSCSCKDYW 736



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 171/364 (46%), Gaps = 34/364 (9%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +I G   +     A+  +  M   G E N  T   +   C        G   H  
Sbjct: 94  VIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAH 153

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSV-------------------------------DYG 101
            +K GL+ +  V   L+ MY + G +                               D  
Sbjct: 154 VLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEA 213

Query: 102 RKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL 161
           R+LFD++P + +++WNAMISGYAQ+G     +  + EM+   V P+  T + VLS+CA  
Sbjct: 214 RELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQS 273

Query: 162 GAH-SVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           G+   +G  V   I+  G GSN  L N LI+MY +CG+L++A  +F+ +  K VVSW  +
Sbjct: 274 GSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVM 333

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG-LEYFYGMKNKY 279
           IGGY      + A+ LF  M++S I P+   F+S+L AC++ G  D G   + Y  KN  
Sbjct: 334 IGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMK 393

Query: 280 GLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELA 339
            ++     +T ++D+  + G L  A  + + M  +   A W A++    +H + + A   
Sbjct: 394 SMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTK-SLATWNAMISGFAMHGHTDTALGL 452

Query: 340 FGKV 343
           F ++
Sbjct: 453 FSRM 456



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 115/262 (43%), Gaps = 34/262 (12%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
           G + Y   LF  +     + WN MI G + +      LE Y  M S G  P+  TF  + 
Sbjct: 76  GDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIF 135

Query: 156 SSCAHL-GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGN---------------- 198
            SC  + GAH  G +V   +   G   N F++ +LINMYA+ G                 
Sbjct: 136 KSCTKIRGAHE-GKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDA 194

Query: 199 ---------------LKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
                          L +AR +FD +P + VVSW A+I GY   G  E A+  F+EM ++
Sbjct: 195 VSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRA 254

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
            + P+ +  +SVLSAC+ +G + +   +        GL         ++D+  + G L E
Sbjct: 255 KVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEE 314

Query: 304 ALELIESMLVEPDGAVWGALLG 325
           A  L E  + + +   W  ++G
Sbjct: 315 ASNLFEK-IQDKNVVSWNVMIG 335


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/538 (40%), Positives = 313/538 (58%), Gaps = 41/538 (7%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPIC-VDPGYLWLGMCCHCIC 73
           + A+I G+ L  L  +A++ + +M  QGVE N+ T   +L +C ++PG        H   
Sbjct: 43  WTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCPIEPG-----KALHSQA 97

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT------------------ 115
           VK G D D  V   L+ +Y + G V   ++LFD +PEK L++                  
Sbjct: 98  VKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAAR 157

Query: 116 -------------WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162
                        WN MI GY QNG+    L L+R M      P+ VT + VLS+C  LG
Sbjct: 158 VLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLG 217

Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIG 222
           A   G  V   I+ NG   N  +  AL++MY++CG+L+ AR +FD +  K VV+W ++I 
Sbjct: 218 ALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIV 277

Query: 223 GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQ 282
           GY + G  + A+QLF  M + G+ P    F+ +LSAC H+G   +G + F  MK++YG++
Sbjct: 278 GYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIE 337

Query: 283 PGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGK 342
           P  EHY CMV+LLGRAG + +A EL+++M +EPD  +WG LLGAC++H  + L E     
Sbjct: 338 PKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVEL 397

Query: 343 VIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMV 402
           ++     N+G Y+LLSNIY+   N DG+ R+R MM++  +KK+PG S +E+  +VH F+ 
Sbjct: 398 LVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLA 457

Query: 403 GDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGI 458
           G  NH +  EIY ML+++   ++ H  T ++D         E     EVHSEKLAIAFG+
Sbjct: 458 GGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGL 517

Query: 459 INTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           INT PGT I ++KNLR+C DCH   KL+SKI  R+ +VRD  RFHHF +G CSC DYW
Sbjct: 518 INTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 575



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 132/241 (54%), Gaps = 4/241 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           VC+N +I GY  N + +EA+ LF +M +   + N VT+L +L  C   G L  G   H  
Sbjct: 169 VCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSY 228

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               G+  +  VG  L+ MY KCGS++  R +FD++ +K ++ WN+MI GYA  G +   
Sbjct: 229 IENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEA 288

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           L+L++ M  +G+ P  +TF+G+LS+C H G  + G ++  +++ + +G  P + +   ++
Sbjct: 289 LQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMK-DEYGIEPKIEHYGCMV 347

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           N+  R G++++A  +   M      V W  ++G   +HG   +  ++ + ++   +   G
Sbjct: 348 NLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSG 407

Query: 250 T 250
           T
Sbjct: 408 T 408



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 118/268 (44%), Gaps = 37/268 (13%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L   Y   G +DY   LF +     +  W A+I G+A  GL    L  Y +M + GV P+
Sbjct: 15  LQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPN 74

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
           A TF  +L  C        G  +  Q    GF S+ ++   L+++YAR G++  A+ +FD
Sbjct: 75  AFTFSSILKLCPI----EPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFD 130

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD----------------------------- 238
            MP K++VS TA++  Y  HG  + A  LFD                             
Sbjct: 131 TMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVL 190

Query: 239 --EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
              MLK+  +P+    +SVLSAC   G  + G  + +      G+Q      T +VD+  
Sbjct: 191 FRRMLKAKAKPNEVTVLSVLSACGQLGALESG-RWVHSYIENNGIQFNVHVGTALVDMYS 249

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALL 324
           + G L +A  L+   + + D   W +++
Sbjct: 250 KCGSLEDA-RLVFDKIDDKDVVAWNSMI 276


>gi|242080213|ref|XP_002444875.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
 gi|241941225|gb|EES14370.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
          Length = 583

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/508 (44%), Positives = 312/508 (61%), Gaps = 6/508 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           + +L        L + A++ + ++    +  +S     +   C D   L  GM  H   V
Sbjct: 76  FCSLTRAAARRGLPAAALAFYRRLLAAALPFSSFAFTSVAKACADLSALRAGMGVHAHAV 135

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             G   D  V   L+ +Y KCG +D  RKLFD + ++ ++ WNAMISGY QNGLA   +E
Sbjct: 136 LLGFGSDRFVQTALVVLYSKCGKLDVARKLFDAIRDRSVVAWNAMISGYEQNGLAGRAIE 195

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           +YREM+  G  PD+ TFV  LS+CA  GA  +G EVE+ I +     N  L  AL+NMYA
Sbjct: 196 VYREMRVAGEAPDSATFVATLSACAQAGALDLGHEVERLIVSERMEMNVVLGAALVNMYA 255

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           RCG + KAR  FD +  + VV+WT++I GYG+HGHG  AV+LFD M + G  P+   FV+
Sbjct: 256 RCGLVNKAREWFDMLQERNVVTWTSMIAGYGMHGHGGEAVKLFDLMRQQGPPPNDVTFVA 315

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI-ESMLV 313
           VLSAC+HAGL   G + F  MK+ YGL P  EHY  MVD+ GRAG L++A++ I +S+  
Sbjct: 316 VLSACAHAGLVSDGRDAFASMKSVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFIHDSIPG 375

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
           EP   VW A+LGACK+HKN  L      ++I LEP N  + VLLSNIY+ +  ++ + +V
Sbjct: 376 EPGPEVWTAMLGACKMHKNFSLGVEVAERLIALEPENPSHRVLLSNIYALSGKMNHVEKV 435

Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS 433
           R  M +RRLKK  GYS +E+ G  H+F +G+++H +T EIY+ L+KL + + +      +
Sbjct: 436 RNTMIKRRLKKPIGYSLIEIGGVAHVFRMGEKSHPKTPEIYQYLEKLIHRITDAGYMPET 495

Query: 434 DQ----KNSEEHLNDTEVHSEKLAIAFGIINTSPGT-EIVVMKNLRICGDCHLFIKLVSK 488
           D        EE       H EKLA+AFG++ TS  T  I ++KNLRICGDCHL IK +S 
Sbjct: 496 DSVLHELEEEEREFALRYHGEKLAVAFGLMMTSGCTAPIRIIKNLRICGDCHLAIKYMSA 555

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           + +R+ IVRD  RFHHFK+G CSC++YW
Sbjct: 556 VENREIIVRDMHRFHHFKAGKCSCQEYW 583



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 135/250 (54%), Gaps = 7/250 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +NA+ISGY  N L   A+ ++ +MR  G   +S T +  L  C   G L LG     
Sbjct: 174 VVAWNAMISGYEQNGLAGRAIEVYREMRVAGEAPDSATFVATLSACAQAGALDLGHEVER 233

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + V   ++++  +G  L+ MY +CG V+  R+ FD + E+ ++TW +MI+GY  +G    
Sbjct: 234 LIVSERMEMNVVLGAALVNMYARCGLVNKAREWFDMLQERNVVTWTSMIAGYGMHGHGGE 293

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--AL 189
            ++L+  M+  G  P+ VTFV VLS+CAH G  S G +    +++  +G  P   +  ++
Sbjct: 294 AVKLFDLMRQQGPPPNDVTFVAVLSACAHAGLVSDGRDAFASMKSV-YGLVPRAEHYCSM 352

Query: 190 INMYARCGNLKKA-RAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           ++MY R G L  A + I D +P +     WTA++G   +H +  + V++ + ++   + P
Sbjct: 353 VDMYGRAGLLDDAMQFIHDSIPGEPGPEVWTAMLGACKMHKNFSLGVEVAERLI--ALEP 410

Query: 248 DGTAFVSVLS 257
           +  +   +LS
Sbjct: 411 ENPSHRVLLS 420



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 111/225 (49%), Gaps = 8/225 (3%)

Query: 109 PEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGL 168
           P      + ++    A+ GL    L  YR + +  +   +  F  V  +CA L A   G+
Sbjct: 69  PSPDSFLFCSLTRAAARRGLPAAALAFYRRLLAAALPFSSFAFTSVAKACADLSALRAGM 128

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
            V       GFGS+ F+  AL+ +Y++CG L  AR +FD +  ++VV+W A+I GY  +G
Sbjct: 129 GVHAHAVLLGFGSDRFVQTALVVLYSKCGKLDVARKLFDAIRDRSVVAWNAMISGYEQNG 188

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE---YFYGMKNKYGLQPGP 285
               A++++ EM  +G  PD   FV+ LSAC+ AG  D G E        + +  +  G 
Sbjct: 189 LAGRAIEVYREMRVAGEAPDSATFVATLSACAQAGALDLGHEVERLIVSERMEMNVVLG- 247

Query: 286 EHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
                +V++  R G +N+A E  + ML E +   W +++    +H
Sbjct: 248 ---AALVNMYARCGLVNKAREWFD-MLQERNVVTWTSMIAGYGMH 288


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/492 (44%), Positives = 297/492 (60%), Gaps = 5/492 (1%)

Query: 30  EAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLM 89
           + V  + +M   G   ++ T   ++  C D   L LG   H   +  G   D  V   L+
Sbjct: 108 DTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALI 167

Query: 90  TMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
            +Y K   +   +K+FD +P++ +I WN++ISGY QNGL    + L+  M   G  PD+ 
Sbjct: 168 ALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSA 227

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
           T V +LSSC+ LGA   G  +      NGF  N  L  +LINMY RCGN+ KAR +FD M
Sbjct: 228 TIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSM 287

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
             + VV+WTA+I GYG+HG+G  A++LF EM   G RP+   FV+VLSAC+H+GL D G 
Sbjct: 288 KERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGR 347

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV-EPDGAVWGALLGACK 328
             F  MK  YGL PG EH  CMVD+ GRAG LN+A + I+  +  EP  AVW ++LGAC+
Sbjct: 348 RVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACR 407

Query: 329 IHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGY 388
           +H+N +L       V+ +EP N G+YV+LSNIY+ A  +D +  VR MM  RRLKK  GY
Sbjct: 408 MHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGY 467

Query: 389 SYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE--HDGTKRSDQKNSEEHLNDTE 446
           S +E+  + +LF +GD++H QT  IYR LD+L     E  +     S   + EE   D  
Sbjct: 468 STIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERDYA 527

Query: 447 V--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHH 504
           +  HSEKLA+AFG++ T+ G  I ++KNLRIC DCH  IK +S I DR+ IVRD  RFHH
Sbjct: 528 LRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHH 587

Query: 505 FKSGFCSCKDYW 516
           FK G CSC DYW
Sbjct: 588 FKDGSCSCLDYW 599



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/261 (33%), Positives = 142/261 (54%), Gaps = 9/261 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD   + T   + +N+LISGY  N L  E++ LF  M E G + +S T++ LL  C   
Sbjct: 182 VFDAMPQRT--IIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQL 239

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  G   H      G DL+  +G  L+ MY +CG+V   R++FD + E+ ++TW AMI
Sbjct: 240 GALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMI 299

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGY  +G     +EL+ EM++ G  P+ +TFV VLS+CAH G    G  V   ++   +G
Sbjct: 300 SGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMK-EAYG 358

Query: 181 SNPFL--NNALINMYARCGNLKKA-RAIFDGMPRKT-VVSWTAIIGGYGIHGHGEVAVQL 236
             P +  N  +++M+ R G L  A + I   +P++     WT+++G   +H + ++ V++
Sbjct: 359 LVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKV 418

Query: 237 FDEMLKSGIRPDGTAFVSVLS 257
            + +L   + P+      +LS
Sbjct: 419 AEHVL--SVEPENPGHYVMLS 437



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 138/261 (52%), Gaps = 2/261 (0%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   +  GL    S+   L+++    GS+ Y R+LF  VP      +++++   ++ G +
Sbjct: 47  HAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFS 106

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              +  YR M   G      TF  V+ +CA L A  +G E+   +   G+GS+ ++  AL
Sbjct: 107 IDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAAL 166

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           I +YA+  ++K A+ +FD MP++T+++W ++I GY  +G  + ++ LF  M++SG +PD 
Sbjct: 167 IALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDS 226

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
              VS+LS+CS  G  D G  + +   +  G        T ++++  R G +++A E+ +
Sbjct: 227 ATIVSLLSSCSQLGALDFGC-WLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFD 285

Query: 310 SMLVEPDGAVWGALLGACKIH 330
           SM  E +   W A++    +H
Sbjct: 286 SM-KERNVVTWTAMISGYGMH 305


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/492 (44%), Positives = 297/492 (60%), Gaps = 5/492 (1%)

Query: 30  EAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLM 89
           + V  + +M   G   ++ T   ++  C D   L LG   H   +  G   D  V   L+
Sbjct: 172 DTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALI 231

Query: 90  TMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
            +Y K   +   +K+FD +P++ +I WN++ISGY QNGL    + L+  M   G  PD+ 
Sbjct: 232 ALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSA 291

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
           T V +LSSC+ LGA   G  +      NGF  N  L  +LINMY RCGN+ KAR +FD M
Sbjct: 292 TIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSM 351

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
             + VV+WTA+I GYG+HG+G  A++LF EM   G RP+   FV+VLSAC+H+GL D G 
Sbjct: 352 KERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGR 411

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV-EPDGAVWGALLGACK 328
             F  MK  YGL PG EH  CMVD+ GRAG LN+A + I+  +  EP  AVW ++LGAC+
Sbjct: 412 RVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACR 471

Query: 329 IHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGY 388
           +H+N +L       V+ +EP N G+YV+LSNIY+ A  +D +  VR MM  RRLKK  GY
Sbjct: 472 MHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGY 531

Query: 389 SYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE--HDGTKRSDQKNSEEHLNDTE 446
           S +E+  + +LF +GD++H QT  IYR LD+L     E  +     S   + EE   D  
Sbjct: 532 STIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERDYA 591

Query: 447 V--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHH 504
           +  HSEKLA+AFG++ T+ G  I ++KNLRIC DCH  IK +S I DR+ IVRD  RFHH
Sbjct: 592 LRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHH 651

Query: 505 FKSGFCSCKDYW 516
           FK G CSC DYW
Sbjct: 652 FKDGSCSCLDYW 663



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/261 (33%), Positives = 142/261 (54%), Gaps = 9/261 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD   + T   + +N+LISGY  N L  E++ LF  M E G + +S T++ LL  C   
Sbjct: 246 VFDAMPQRT--IIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQL 303

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  G   H      G DL+  +G  L+ MY +CG+V   R++FD + E+ ++TW AMI
Sbjct: 304 GALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMI 363

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGY  +G     +EL+ EM++ G  P+ +TFV VLS+CAH G    G  V   ++   +G
Sbjct: 364 SGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMK-EAYG 422

Query: 181 SNPFL--NNALINMYARCGNLKKA-RAIFDGMPRKT-VVSWTAIIGGYGIHGHGEVAVQL 236
             P +  N  +++M+ R G L  A + I   +P++     WT+++G   +H + ++ V++
Sbjct: 423 LVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKV 482

Query: 237 FDEMLKSGIRPDGTAFVSVLS 257
            + +L   + P+      +LS
Sbjct: 483 AEHVL--SVEPENPGHYVMLS 501



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 138/261 (52%), Gaps = 2/261 (0%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   +  GL    S+   L+++    GS+ Y R+LF  VP      +++++   ++ G +
Sbjct: 111 HAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFS 170

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              +  YR M   G      TF  V+ +CA L A  +G E+   +   G+GS+ ++  AL
Sbjct: 171 IDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAAL 230

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           I +YA+  ++K A+ +FD MP++T+++W ++I GY  +G  + ++ LF  M++SG +PD 
Sbjct: 231 IALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDS 290

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
              VS+LS+CS  G  D G  + +   +  G        T ++++  R G +++A E+ +
Sbjct: 291 ATIVSLLSSCSQLGALDFGC-WLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFD 349

Query: 310 SMLVEPDGAVWGALLGACKIH 330
           SM  E +   W A++    +H
Sbjct: 350 SM-KERNVVTWTAMISGYGMH 369


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/517 (43%), Positives = 318/517 (61%), Gaps = 10/517 (1%)

Query: 1   VFDE-SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD 59
           +FDE  IK     V +NA+ISGY       EA+ LF +M +  V+ +  TM  +L  C  
Sbjct: 166 MFDEIPIKDV---VSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTH 222

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
            G + LG   H      G   +  + N L+ +Y KCG ++    LF+ +  K +I+WN +
Sbjct: 223 SGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTL 282

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI--QAN 177
           I GYA        L +++EM  LG  P+ VT + +L +CAHLGA  +G  +   I  +  
Sbjct: 283 IGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLK 342

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
           G  +N  L  +LI+MYA+CGN++ A  +FD +  K++ S  A+I G+ +HG  + A  L 
Sbjct: 343 GIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLL 402

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
             M K GI PD   FV +LSACSHAGL+D G + F  M   Y ++P  EHY CM+DLLGR
Sbjct: 403 SRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGR 462

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
           +G   EA ELI SM +EPDG +WG+LL ACKIHKN+EL EL   K++K+EP N G YVLL
Sbjct: 463 SGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLL 522

Query: 358 SNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML 417
           SNIY+ +   D + RVR ++ ++ LKK PG S +E+   VH F++GD+ H Q  EIY+ML
Sbjct: 523 SNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFLIGDKFHPQNKEIYKML 582

Query: 418 DKLENLVQEHDGTKRSDQ--KNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNL 473
           +++++L+ E      + +  +  EE L +  +  HSEKLAIAFG+I+T PGT++ ++KNL
Sbjct: 583 EEIDSLLAETGFVSDTSEVLQEMEEELKEGALSYHSEKLAIAFGLISTKPGTKLRIVKNL 642

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFC 510
           R+C +CH   KL+SKI  R+ I RD +RFHHFK G C
Sbjct: 643 RVCRNCHEATKLISKIYKREIIARDRSRFHHFKDGMC 679



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 142/298 (47%), Gaps = 39/298 (13%)

Query: 80  LDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM 139
           LDF    C++T Y     + Y   +F  + E   ++WN MI G+A +      L LY  M
Sbjct: 16  LDF----CILTPYFH--GLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYM 69

Query: 140 KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC--- 196
            SLG+ P++ TF  +  SCA   A   G ++  QI   G   +  ++ +LI+MYA+    
Sbjct: 70  ISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIV 129

Query: 197 ----------------------------GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
                                       GN+ KA+ +FD +P K VVSW A+I GY   G
Sbjct: 130 EDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIG 189

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY 288
             + A++LF+EM+K  ++PD +   +VLS C+H+G  + G +    + N +G     +  
Sbjct: 190 RYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDN-HGFGSNLKLV 248

Query: 289 TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
             ++DL  + G++  A  L E +  + D   W  L+G      + + A L F +++KL
Sbjct: 249 NALIDLYSKCGEMERAHGLFEGLQYK-DVISWNTLIGGYAYINHHKEALLVFQEMLKL 305


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/546 (41%), Positives = 317/546 (58%), Gaps = 46/546 (8%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N +I G VLN    E++ ++  MR++G+  +S T   LL  C       LG+  H + V
Sbjct: 76  FNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVV 135

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG---------------------- 112
           K G + D  V   L+++Y KCG +D   K+FD +PEK                       
Sbjct: 136 KAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAID 195

Query: 113 ----------------LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS 156
                           +++W++MI GYA NGL    L+L+ +M + G  PD    VGVL 
Sbjct: 196 MFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLC 255

Query: 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS 216
           +CA LGA  +G      +  N F  NP L  ALI+MYA+CG +  A  +F GM +K +V 
Sbjct: 256 ACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVV 315

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
           W A I G  + GH + A  LF +M KSGI PDG  FV +L AC+HAGL D+G +YF  M+
Sbjct: 316 WNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSME 375

Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELA 336
             + L P  EHY CMVDLLGRAG L+EA +L++SM +E +  VWGALLG C++H++ +L 
Sbjct: 376 RVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLV 435

Query: 337 ELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGR 396
           E    ++I LEP N+G YVLLSNIYS +   +   ++R +M ER +KK PGYS++E+ G 
Sbjct: 436 EGVLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGV 495

Query: 397 VHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD------QKNSEEHLNDTEVHSE 450
           VH F+VGD +H  + +IY  L +L   ++       +D      ++  +EH      HSE
Sbjct: 496 VHEFLVGDTSHPLSEKIYAKLGELVKDLKASGYVPTTDYVLFDIEEEEKEHF--IGCHSE 553

Query: 451 KLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFC 510
           KLAIAFG+I+T+P  +I V+KNLR+CGDCH  IK +S+   R+ IVRD  RFH F  G C
Sbjct: 554 KLAIAFGLISTAPNDKIRVVKNLRVCGDCHEAIKHISRFTGREIIVRDNNRFHCFNDGSC 613

Query: 511 SCKDYW 516
           SCKDYW
Sbjct: 614 SCKDYW 619



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 149/328 (45%), Gaps = 42/328 (12%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   ++ GLD D  + N ++      G+ +Y  ++F Q  E  +  +N MI G   N   
Sbjct: 30  HAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDSF 89

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              +E+Y  M+  G+ PD+ TF  +L +CA L    +G+++   +   G  S+ F+N +L
Sbjct: 90  QESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAFVNTSL 149

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIG--------------------------- 222
           +++Y +CG +  A  +FD +P K V +WTAII                            
Sbjct: 150 VSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLE 209

Query: 223 -----------GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEY 271
                      GY  +G  + A+ LF +ML  G RPD  A V VL AC+  G  + G  +
Sbjct: 210 KDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELG-NW 268

Query: 272 FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHK 331
              + ++      P   T ++D+  + G+++ A E+   M  + D  VW A +    +  
Sbjct: 269 ASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMR-KKDIVVWNAAISGLAMSG 327

Query: 332 NVELAELAFGKVIK--LEPMNTGYYVLL 357
           +V+ A   FG++ K  +EP    +  LL
Sbjct: 328 HVKAAFGLFGQMEKSGIEPDGNTFVGLL 355



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 137/296 (46%), Gaps = 8/296 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD  ++     V ++++I GY  N L  EA+ LF KM  +G   +   M+ +L  C   
Sbjct: 203 VFDGMLEKD--IVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARL 260

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L LG     +  +     +  +G  L+ MY KCG +D   ++F  + +K ++ WNA I
Sbjct: 261 GALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAI 320

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SG A +G       L+ +M+  G+ PD  TFVG+L +C H G    G +    ++   F 
Sbjct: 321 SGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSME-RVFT 379

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLF 237
             P + +   ++++  R G L +A  +   MP     + W A++GG  +H   ++   + 
Sbjct: 380 LTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVL 439

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293
            +++   + P  +    +LS    A    +       + ++ G++  P +    VD
Sbjct: 440 KQLI--ALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVD 493


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/508 (41%), Positives = 317/508 (62%), Gaps = 5/508 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + ++I+GYV   L   A+ LF +M+ +GV  +   +  +L  C   G L  G   H  
Sbjct: 420 VSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDY 479

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             +  L+ +  V N L  MY KCGS+     +F  + +K +I+WN MI GY +N L    
Sbjct: 480 IRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEA 539

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+ EM+     PD  T   +L +CA L A   G E+      NG+  + ++ NA+++M
Sbjct: 540 LTLFAEMQRESK-PDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDM 598

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CG L  AR++FD +P K +VSWT +I GYG+HG+G  A+  F++M  +GI PD  +F
Sbjct: 599 YVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSF 658

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +S+L ACSH+GL D+G + F  MK +  ++P  EHY CMVDLL R G L +A + I++M 
Sbjct: 659 ISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMP 718

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           ++PD  +WGALL  C+IH +V+LAE    ++ +LEP NTGYYVLL+NIY+EA   + + +
Sbjct: 719 IKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQK 778

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           +R  + +R LKK+PG S++E+KG++++F+ GD +  Q  +I  +L +L + ++E   + +
Sbjct: 779 LRKKIGQRGLKKNPGCSWIEIKGKINIFVAGDCSKPQAKKIELLLKRLRSKMKEEGYSPK 838

Query: 433 SDQK--NSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
           +     N++E   +  +  HSEKLA+AFG++N  PG  I V KNLR+CGDCH   K +SK
Sbjct: 839 TAYALLNADEREKEVALCGHSEKLAMAFGMLNLPPGKTIRVTKNLRVCGDCHEMAKFMSK 898

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
              R+ I+RD++RFHHFK G CSC+ YW
Sbjct: 899 SASREIILRDSSRFHHFKDGSCSCRGYW 926



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 114/334 (34%), Positives = 180/334 (53%), Gaps = 12/334 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE   +    + +N++ISGYV N L    + +F KM   GV+I+  TM+ +   C + 
Sbjct: 308 LFDEL--TDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANI 365

Query: 61  GYLWLGMCCHCICVKFG-LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
           G L LG   H   +K   LD +    N L+ MY KCG ++   ++F+++ EK +++W +M
Sbjct: 366 GTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSM 425

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I+GY + GL+   ++L+ EMKS GV PD      +L++CA  G    G  V   I+ N  
Sbjct: 426 ITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNL 485

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            +N F++NAL +MYA+CG++K A  +F  M +K V+SW  +IGGY  +     A+ LF E
Sbjct: 486 ETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAE 545

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHY--TCMVDLLG 296
           M +   +PDGT    +L AC+     DKG E + Y ++N Y      + Y    +VD+  
Sbjct: 546 MQRES-KPDGTTVACILPACASLAALDKGREIHGYALRNGY----SEDKYVTNAVVDMYV 600

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           + G L  A  L + M+   D   W  ++    +H
Sbjct: 601 KCGLLVLARSLFD-MIPNKDLVSWTVMIAGYGMH 633



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 102/326 (31%), Positives = 170/326 (52%), Gaps = 5/326 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+  +S      +N +IS Y  +    E+++LF +M E G++ NS T   +L      
Sbjct: 207 VFDKLSESK--IFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAV 264

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             +  G   H +  K G +   +V N L++ Y     V   +KLFD++ ++ +I+WN+MI
Sbjct: 265 ARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMI 324

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ-QIQANGF 179
           SGY +NGL    +E++ +M   GV  D  T V V  +CA++G   +G  +    I+A   
Sbjct: 325 SGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATL 384

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
                 NN L++MY++CG+L  A  +F+ M  KTVVSWT++I GY   G  + A++LFDE
Sbjct: 385 DREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDE 444

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M   G+ PD  A  S+L+AC+  G    G +  +    +  L+        + D+  + G
Sbjct: 445 MKSRGVVPDVYAVTSILNACAINGNLKSG-KIVHDYIRENNLETNSFVSNALTDMYAKCG 503

Query: 300 QLNEALELIESMLVEPDGAVWGALLG 325
            + +A ++  S + + D   W  ++G
Sbjct: 504 SMKDAHDVF-SHMKKKDVISWNTMIG 528



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 132/260 (50%), Gaps = 2/260 (0%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           +L +C +   +  G     I    G+ +D  +G  L+ MYVKCG +  GR +FD++ E  
Sbjct: 156 ILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESK 215

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
           +  WN MIS Y+ +G     + L+++M  LG+ P++ TF  +L   A +     G +V  
Sbjct: 216 IFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHG 275

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
            I   GF S   + N+LI+ Y     ++ A+ +FD +  + V+SW ++I GY  +G  + 
Sbjct: 276 LICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDR 335

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG-LEYFYGMKNKYGLQPGPEHYTCM 291
            +++F +ML  G+  D    V+V  AC++ G    G + + Y +K    L         +
Sbjct: 336 GIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAA-TLDREVRFNNTL 394

Query: 292 VDLLGRAGQLNEALELIESM 311
           +D+  + G LN A+ + E M
Sbjct: 395 LDMYSKCGDLNSAIRVFERM 414



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 60/122 (49%)

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF 206
           D   +  +L  CA   +   G  V   I+++G   +  L   L+ MY +CG+LK+ R +F
Sbjct: 149 DLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVF 208

Query: 207 DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD 266
           D +    +  W  +I  Y   G+   ++ LF +ML+ GI+P+   F S+L   +     +
Sbjct: 209 DKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVE 268

Query: 267 KG 268
           +G
Sbjct: 269 EG 270


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/509 (43%), Positives = 315/509 (61%), Gaps = 7/509 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++I  YV N    EA+ +F KM ++GV+   V+++  L  C D G L  G   H +
Sbjct: 303 VSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKL 362

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            V+ GLD + SV N L++MY KC  VD    +F ++  + L++WNAMI G+AQNG     
Sbjct: 363 SVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDA 422

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L  + +M+S  V PD  T+V V+++ A L        +   +  +    N F+  AL++M
Sbjct: 423 LNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDM 482

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG +  AR IFD M  + V +W A+I GYG HG G+ A++LF+EM K  I+P+G  F
Sbjct: 483 YAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTF 542

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +SV+SACSH+GL + GL+ FY MK  Y ++   +HY  MVDLLGRAG+LNEA + I  M 
Sbjct: 543 LSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMP 602

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           V+P   V+GA+LGAC+IHKNV  AE A  ++ +L P + GY+VLL+NIY  A   + + +
Sbjct: 603 VKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQ 662

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR+ M  + L+K PG S VE+K  VH F  G   H  + +IY  L+KL   ++E      
Sbjct: 663 VRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPD 722

Query: 433 SD-----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           ++     + + +E L  T  HSEKLAI+FG++NT+ GT I V KNLR+C DCH   K +S
Sbjct: 723 TNLVLGVENDVKEQLLST--HSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYIS 780

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +  R+ +VRD  RFHHFK+G CSC DYW
Sbjct: 781 LVTGREIVVRDMQRFHHFKNGACSCGDYW 809



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 162/300 (54%), Gaps = 1/300 (0%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           + L V Y+ ++ G+   S + +A+  F +MR   VE        LL +C D   L +G  
Sbjct: 97  SKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKE 156

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            H + VK G  LD      L  MY KC  V+  RK+FD++PE+ L++WN +++GY+QNG+
Sbjct: 157 IHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGM 216

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
           A   LE+ + M    + P  +T V VL + + L   SVG E+      +GF S   ++ A
Sbjct: 217 ARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTA 276

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           L++MYA+CG+L+ AR +FDGM  + VVSW ++I  Y  + + + A+ +F +ML  G++P 
Sbjct: 277 LVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPT 336

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
             + +  L AC+  G  ++G  + + +  + GL         ++ +  +  +++ A  + 
Sbjct: 337 DVSVMGALHACADLGDLERG-RFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMF 395



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 163/318 (51%), Gaps = 2/318 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +++GY  N +   A+ +   M E+ ++ + +T++ +LP       + +G   H  
Sbjct: 202 VSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGY 261

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ G D   ++   L+ MY KCGS++  R+LFD + E+ +++WN+MI  Y QN      
Sbjct: 262 AMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEA 321

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + ++++M   GV P  V+ +G L +CA LG    G  + +     G   N  + N+LI+M
Sbjct: 322 MLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISM 381

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +C  +  A ++F  +  +T+VSW A+I G+  +G    A+  F +M    ++PD   +
Sbjct: 382 YCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTY 441

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           VSV++A +   +T    ++ +G+  +  L       T +VD+  + G +  A  LI  M+
Sbjct: 442 VSVITAIAELSITHHA-KWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIA-RLIFDMM 499

Query: 313 VEPDGAVWGALLGACKIH 330
            E     W A++     H
Sbjct: 500 SERHVTTWNAMIDGYGTH 517



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 127/257 (49%), Gaps = 2/257 (0%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L++++ + GSVD   ++F+ +  K  + ++ M+ G+A+       L+ +  M+   V P 
Sbjct: 75  LVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPV 134

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
              F  +L  C       VG E+   +  +GF  + F    L NMYA+C  + +AR +FD
Sbjct: 135 VYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFD 194

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            MP + +VSW  I+ GY  +G   +A+++   M +  ++P     VSVL A S   L   
Sbjct: 195 RMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISV 254

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           G E  +G   + G        T +VD+  + G L  A +L + ML E +   W +++ A 
Sbjct: 255 GKE-IHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGML-ERNVVSWNSMIDAY 312

Query: 328 KIHKNVELAELAFGKVI 344
             ++N + A L F K++
Sbjct: 313 VQNENPKEAMLIFQKML 329



 Score = 45.1 bits (105), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 2/149 (1%)

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
           NG     F    L++++ R G++ +A  +F+ +  K  V +  ++ G+      + A+Q 
Sbjct: 63  NGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQF 122

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           F  M    + P    F  +L  C        G E  +G+  K G        T + ++  
Sbjct: 123 FVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKE-IHGLLVKSGFSLDLFAMTGLENMYA 181

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLG 325
           +  Q+NEA ++ + M  E D   W  ++ 
Sbjct: 182 KCRQVNEARKVFDRM-PERDLVSWNTIVA 209


>gi|125535994|gb|EAY82482.1| hypothetical protein OsI_37700 [Oryza sativa Indica Group]
          Length = 584

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/522 (43%), Positives = 319/522 (61%), Gaps = 15/522 (2%)

Query: 10  HLTVCYNALISGYVLNSLVS---------EAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           HL    +     ++L+SL           EA++ +G++    +  +S         C D 
Sbjct: 63  HLLAASHPACDSFLLSSLARAAAHRGLPGEAIAFYGRLLAAALPFSSFAFTAAAKACADL 122

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  GM  H   V  G   D  V   L+ +Y KCG +   RKLFD + ++ ++ WNAMI
Sbjct: 123 SALRTGMAVHAHSVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMI 182

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGY QNGLA   +E+YREM+   V PD+ TFV  LS+CA  GA  +G EVE++I ++   
Sbjct: 183 SGYEQNGLAERAIEVYREMQVAQVVPDSATFVTTLSACAQAGALDLGREVERRIVSDQMD 242

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            + FL +AL+NMYARCG + KAR  FD +  + VV+WT++I GYG+HGHG  A++LF  M
Sbjct: 243 VSVFLGSALVNMYARCGLVSKARDWFDRLQERNVVTWTSMIAGYGMHGHGCEAIKLFHLM 302

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
              G  P+   FV+VL+AC+HAGL ++G   F  MK  YGL P  EHY  MVD+ GRAG 
Sbjct: 303 RLEGPTPNDVTFVAVLAACAHAGLVNEGRSAFDSMKRVYGLVPRAEHYCSMVDMYGRAGL 362

Query: 301 LNEALELI-ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
           L++A++ I +S+  EP   VW A+LGACK+HKN  L      ++I LEP N  + VLLSN
Sbjct: 363 LDDAMQFIRDSIPGEPGPEVWTAMLGACKMHKNFNLGVEVAERLIALEPENPSHRVLLSN 422

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
           IY+ +  ++ + +VR +M +RRLKK  GYS +EL G  HLF +G+++H QT EIY+ L++
Sbjct: 423 IYALSGKMNHVEKVRNVMIKRRLKKQIGYSLIELGGTSHLFRMGEKSHQQTREIYQYLEE 482

Query: 420 LENLVQEHDGTKRSDQKNSEEHLNDTEV----HSEKLAIAFGIINTS-PGTEIVVMKNLR 474
           L + + +      +D    E    + EV    HSEKLA+A+G++ +S   T I V+KNLR
Sbjct: 483 LIHRISDAGYVPETDSVLHELEEEEREVALRYHSEKLAVAYGLMMSSGSTTPIRVIKNLR 542

Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           ICGDCHL IK +S +  R+ IVRD  RFHHFK G CSC +YW
Sbjct: 543 ICGDCHLAIKFMSSVESREIIVRDKHRFHHFKDGKCSCLEYW 584


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/519 (40%), Positives = 316/519 (60%), Gaps = 17/519 (3%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           S    V +NA+I+ YV +     AV+ F  + ++G++ +S T   +L +C  P  L LG 
Sbjct: 469 SKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGK 528

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
               + ++ G + D  + N L++M+V CG +     LF+ +PE+ L++WN +I+G+ Q+G
Sbjct: 529 WVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHG 588

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
                 + ++ M+  GV PD +TF G+L++CA   A + G  +   I       +  +  
Sbjct: 589 ENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGT 648

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
            LI+MY +CG++  A  +F  +P+K V SWT++I GY  HG G+ A++LF +M + G++P
Sbjct: 649 GLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKP 708

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           D   FV  LSAC+HAGL  +GL +F  MK+ + ++P  EHY CMVDL GRAG L+EA+E 
Sbjct: 709 DWITFVGALSACAHAGLIKEGLHHFESMKD-FNIEPRMEHYGCMVDLFGRAGLLHEAVEF 767

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNL 367
           I  M V+PD  +WGALLGAC++H +VELAE    K ++L+P + G YV+LSNIY+ A   
Sbjct: 768 INKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMW 827

Query: 368 DGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH 427
             + ++R +M +R + K PG S++E+ GRVH+F   D+ H Q  EI+  L +L      H
Sbjct: 828 KEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDDKTHPQIEEIHAELGRL------H 881

Query: 428 DGTKR----SDQKNSEEHLNDTEV------HSEKLAIAFGIINTSPGTEIVVMKNLRICG 477
              K+     D +     + D+E       HSE+LAIA+G++ T P T IV+ KNLR+CG
Sbjct: 882 MEMKKLGYVPDTRYVLHDVEDSEKEHALCHHSERLAIAYGLLKTPPLTPIVISKNLRVCG 941

Query: 478 DCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           DCH   KL+SKI  RQ I RD+ RFHHFK G CSC D+W
Sbjct: 942 DCHTATKLISKITKRQIIARDSNRFHHFKDGVCSCGDFW 980



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 186/360 (51%), Gaps = 6/360 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE          +N L+ GYV +    EA  L  +M + GV+ +  T + +L  C D 
Sbjct: 161 IFDEMPDKD--VYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADA 218

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             +  G     + +  G D D  VG  L+ M++KCG VD   K+F+ +P + LITW +MI
Sbjct: 219 KNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMI 278

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +G A++        L++ M+  GV PD V FV +L +C H  A   G  V  +++  G  
Sbjct: 279 TGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLD 338

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           +  ++  AL++MY +CG+++ A  +F+ +  + VVSWTA+I G+  HG  E A   F++M
Sbjct: 339 TEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKM 398

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           ++SGI P+   F+S+L ACS      +G +  +    K G        T ++ +  + G 
Sbjct: 399 IESGIEPNRVTFMSILGACSRPSALKQGRQ-IHDRIIKAGYITDDRVRTALLSMYAKCGS 457

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
           L +A  + E  + + +   W A++ A   H+  + A   F  ++K  ++P ++ +  +L+
Sbjct: 458 LMDARNVFER-ISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILN 516



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 167/324 (51%), Gaps = 2/324 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + + ++I+G   +    +A +LF  M E+GV+ + V  + LL  C  P  L  G   H  
Sbjct: 272 ITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHAR 331

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             + GLD +  VG  L++MY KCGS++   ++F+ V  + +++W AMI+G+AQ+G     
Sbjct: 332 MKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEA 391

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
              + +M   G+ P+ VTF+ +L +C+   A   G ++  +I   G+ ++  +  AL++M
Sbjct: 392 FLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSM 451

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG+L  AR +F+ + ++ VV+W A+I  Y  H   + AV  F  +LK GI+PD + F
Sbjct: 452 YAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTF 511

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S+L+ C      + G ++   +  + G +        +V +    G L  A+ L   M 
Sbjct: 512 TSILNVCKSPDALELG-KWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDM- 569

Query: 313 VEPDGAVWGALLGACKIHKNVELA 336
            E D   W  ++     H   + A
Sbjct: 570 PERDLVSWNTIIAGFVQHGENQFA 593



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 108/348 (31%), Positives = 170/348 (48%), Gaps = 33/348 (9%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+I+G+  +  + EA   F KM E G+E N VT + +L  C  P  L  G   H  
Sbjct: 373 VSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDR 432

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G   D  V   L++MY KCGS+   R +F+++ ++ ++ WNAMI+ Y Q+    + 
Sbjct: 433 IIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNA 492

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           +  ++ +   G+ PD+ TF  +L+ C    A  +G  V+  I   GF S+  + NAL++M
Sbjct: 493 VATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSM 552

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           +  CG+L  A  +F+ MP + +VSW  II G+  HG  + A   F  M +SG++PD   F
Sbjct: 553 FVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITF 612

Query: 253 VSVLSACS-----------HAGLTDKGLEY-------FYGMKNKYG--------LQPGPE 286
             +L+AC+           HA +T+  L+           M  K G            P+
Sbjct: 613 TGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPK 672

Query: 287 H----YTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGAC 327
                +T M+    + G+  EALEL   M    V+PD   +   L AC
Sbjct: 673 KNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSAC 720



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 181/346 (52%), Gaps = 8/346 (2%)

Query: 16  NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVK 75
           NA ++       +SEA+ +   +    ++I+  T   LL +C+    L  G   H   +K
Sbjct: 73  NAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHN-HIK 131

Query: 76  FG-LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           F  +  D  + N L++MY KCG+ +  +++FD++P+K + +WN ++ GY Q+        
Sbjct: 132 FSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFR 191

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+ +M   GV PD  TFV +L++CA       G E+   I   G+ ++ F+  ALINM+ 
Sbjct: 192 LHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHI 251

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG +  A  +F+ +PR+ +++WT++I G   H   + A  LF  M + G++PD  AFVS
Sbjct: 252 KCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVS 311

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           +L AC+H    ++G      MK + GL       T ++ +  + G + +ALE+    LV+
Sbjct: 312 LLKACNHPEALEQGKRVHARMK-EVGLDTEIYVGTALLSMYTKCGSMEDALEVFN--LVK 368

Query: 315 PDGAV-WGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLL 357
               V W A++     H  +E A L F K+I+  +EP    +  +L
Sbjct: 369 GRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSIL 414


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/511 (41%), Positives = 312/511 (61%), Gaps = 10/511 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V YN +I+GY  + +  +A+ +  +M    ++ +S T+  +LPI  +   +  G   H  
Sbjct: 208 VSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGY 267

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ G+D D  +G+ L+ MY K   ++   ++F ++  +  I+WN++++GY QNG     
Sbjct: 268 VIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEA 327

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+R+M +  V P AV F  V+ +CAHL    +G ++   +   GFGSN F+ +AL++M
Sbjct: 328 LRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDM 387

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++CGN+K AR IFD M     VSWTAII G+ +HGHG  AV LF+EM + G++P+  AF
Sbjct: 388 YSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAF 447

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           V+VL+ACSH GL D+   YF  M   YGL    EHY  + DLLGRAG+L EA   I  M 
Sbjct: 448 VAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMC 507

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           VEP G+VW  LL +C +HKN+ELAE    K+  ++  N G YVL+ N+Y+       + +
Sbjct: 508 VEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAK 567

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL------ENLVQE 426
           +R+ MR++ L+K P  S++E+K + H F+ GDR+H    +I   L  +      E  V +
Sbjct: 568 LRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVAD 627

Query: 427 HDGTKRS-DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
             G     D+++  E L     HSE+LA+AFGIINT PGT I V KN+RIC DCH+ IK 
Sbjct: 628 TSGVLHDVDEEHKRELLFG---HSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKF 684

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +SKI +R+ IVRD +RFHHF  G CSC DYW
Sbjct: 685 ISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 162/354 (45%), Gaps = 38/354 (10%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + + ++I  +   SL S+A++ F +MR  G   +      +L  C     L  G   H  
Sbjct: 71  LAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGF 130

Query: 73  CVKFGLDLDFSVGNCLMTMYVKC---GS-------------------------------- 97
            V+ G+D D   GN LM MY K    GS                                
Sbjct: 131 IVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPF 190

Query: 98  -VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS 156
            +D  R++F+ +P K ++++N +I+GYAQ+G+    L + REM +  + PD+ T   VL 
Sbjct: 191 GIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLP 250

Query: 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS 216
             +       G E+   +   G  S+ ++ ++L++MYA+   ++ +  +F  +  +  +S
Sbjct: 251 IFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGIS 310

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
           W +++ GY  +G    A++LF +M+ + ++P   AF SV+ AC+H      G +  +G  
Sbjct: 311 WNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQ-LHGYV 369

Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
            + G        + +VD+  + G +  A ++ + M V  D   W A++    +H
Sbjct: 370 LRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNV-LDEVSWTAIIMGHALH 422



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 117/282 (41%), Gaps = 38/282 (13%)

Query: 80  LDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM 139
           L  +  + ++++Y     +     LF  +    ++ W ++I  +    L +  L  + EM
Sbjct: 37  LSHTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEM 96

Query: 140 KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR---- 195
           ++ G CPD   F  VL SC  +     G  V   I   G   + +  NAL+NMYA+    
Sbjct: 97  RASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGM 156

Query: 196 -----CGN---------------------------LKKARAIFDGMPRKTVVSWTAIIGG 223
                 GN                           +   R +F+ MPRK VVS+  II G
Sbjct: 157 GSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAG 216

Query: 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP 283
           Y   G  E A+++  EM  + ++PD     SVL   S      KG E  +G   + G+  
Sbjct: 217 YAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKE-IHGYVIRKGIDS 275

Query: 284 GPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
                + +VD+  ++ ++ ++ E + S L   DG  W +L+ 
Sbjct: 276 DVYIGSSLVDMYAKSARIEDS-ERVFSRLYCRDGISWNSLVA 316


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/509 (43%), Positives = 314/509 (61%), Gaps = 7/509 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++I  YV N    EA+ +F KM ++GV+   V+++  L  C D G L  G   H +
Sbjct: 303 VSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKL 362

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            V+  LD + SV N L++MY KC  VD    +F ++  + +++WNAMI G+AQNG     
Sbjct: 363 SVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEA 422

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L  + +M++  V PD  T+V V+++ A L        +   +  N    N F+  AL++M
Sbjct: 423 LNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDM 482

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG +  AR IFD M  + V +W A+I GYG HG G+ A++LF+EM K  IRP+G  F
Sbjct: 483 YAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTF 542

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +SV+SACSH+GL + GL+ F+ MK  Y ++P  +HY  MVDLLGRAG+LNEA + I  M 
Sbjct: 543 LSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMP 602

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           V+P   V+GA+LGAC+IHKNV  AE    ++ +L P + GY+VLL+NIY  A   + + +
Sbjct: 603 VKPAVNVYGAMLGACQIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQ 662

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR+ M  + L+K PG S VE+K  VH F  G   H  + +IY  L+KL   ++E      
Sbjct: 663 VRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPSSKKIYAFLEKLICQIKEAGYVPD 722

Query: 433 SD-----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           ++     + + +E L  +  HSEKLAI+FG++NT+ GT I V KNLR+C DCH   K +S
Sbjct: 723 TNLILGLEDDVKEQLLSS--HSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYIS 780

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +  R+ IVRD  RFHHFK+G CSC DYW
Sbjct: 781 LVTGREIIVRDMQRFHHFKNGACSCGDYW 809



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/258 (34%), Positives = 141/258 (54%)

Query: 11  LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
           L V Y  ++ G+   S + +A+  F +MR+  VE        LL +C D   L +G   H
Sbjct: 99  LNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIH 158

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
            + VK G  LD      L  MY KC  V   RK+FD++PE+ L++WN +++GY+QNG+A 
Sbjct: 159 GLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMAR 218

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             LE+   M    + P  +T V VL + + L    +G E+       GF S   +  AL+
Sbjct: 219 MALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALV 278

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MYA+CG+LK AR +FDGM  + VVSW ++I  Y  + + + A+ +F +ML  G++P   
Sbjct: 279 DMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDV 338

Query: 251 AFVSVLSACSHAGLTDKG 268
           + +  L AC+  G  ++G
Sbjct: 339 SVMGALHACADLGDLERG 356



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 137/293 (46%), Gaps = 10/293 (3%)

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVG--------NCLMTMYVKCGSVDYGRKLFDQVPEK 111
           P  L L  C     ++  L L F  G          L++++ + GSVD   ++F+ + +K
Sbjct: 39  PAALLLERCSSLKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKK 98

Query: 112 GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVE 171
             + +  M+ G+A+       L+ +  M+   V P    F  +L  C       VG E+ 
Sbjct: 99  LNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIH 158

Query: 172 QQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGE 231
             +  +GF  + F    L NMYA+C  + +AR +FD MP + +VSW  I+ GY  +G   
Sbjct: 159 GLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMAR 218

Query: 232 VAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCM 291
           +A+++ + M +  ++P     VSVL A S   L   G E  +G   + G        T +
Sbjct: 219 MALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKE-IHGYAMRAGFDSLVNIATAL 277

Query: 292 VDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI 344
           VD+  + G L  A  L + ML E +   W +++ A   ++N + A + F K++
Sbjct: 278 VDMYAKCGSLKTARLLFDGML-ERNVVSWNSMIDAYVQNENPKEAMVIFQKML 329


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/511 (41%), Positives = 310/511 (60%), Gaps = 10/511 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V YN +I+GY  + +  +A+ +  +M    ++ ++ T+  +LPI  +   +  G   H  
Sbjct: 172 VSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGY 231

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ G+D D  +G+ L+ MY K   ++   ++F  +  +  I+WN++++GY QNG     
Sbjct: 232 VIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEA 291

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+R+M S  V P AV F  V+ +CAHL    +G ++   +   GFG N F+ +AL++M
Sbjct: 292 LRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDM 351

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++CGN++ AR IFD M     VSWTAII G+ +HGHG  AV LF+EM + G++P+  AF
Sbjct: 352 YSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAF 411

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           V+VL+ACSH GL D+   YF  M   YGL    EHY  + DLLGRAG+L EA + I  M 
Sbjct: 412 VAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMR 471

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           VEP G+VW  LL +C +HKN+ELAE    K+  ++  N G YVL+ N+Y+       + +
Sbjct: 472 VEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAK 531

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL------ENLVQE 426
           +R+ +R++ L+K P  S++E+K + H F+ GDR+H     I   L  +      E  V +
Sbjct: 532 LRLRVRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDRINEFLKAVMEQMEKEGYVAD 591

Query: 427 HDGTKRS-DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
             G     D+++  E L     HSE+LA+AFGIINT PGT I V KN+RIC DCH+ IK 
Sbjct: 592 TSGVLHDVDEEHKRELLFG---HSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKF 648

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +SKI +R+ IVRD +RFHHF  G CSC DYW
Sbjct: 649 ISKITEREIIVRDNSRFHHFNRGSCSCGDYW 679



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 160/318 (50%), Gaps = 2/318 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + + ++I  +   SL S A++ F +MR  G   +      +L  C     L  G   H  
Sbjct: 71  LAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGF 130

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            V+ G+D D   GN LM MY K   +D  RK+F+ +P K ++++N +I+GYAQ+G+    
Sbjct: 131 IVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDA 190

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L + REM +  + PDA T   VL   +       G E+   +   G  S+ ++ ++L++M
Sbjct: 191 LRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDM 250

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+   ++ +  +F  + R+  +SW +++ GY  +G    A++LF +M+ + +RP   AF
Sbjct: 251 YAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAF 310

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            SV+ AC+H      G +  +G   + G        + +VD+  + G +  A ++ + M 
Sbjct: 311 SSVIPACAHLATLHLGKQ-LHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMN 369

Query: 313 VEPDGAVWGALLGACKIH 330
           +  D   W A++    +H
Sbjct: 370 LH-DEVSWTAIIMGHALH 386



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 122/237 (51%), Gaps = 12/237 (5%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           ++ +N+L++GYV N   +EA+ LF +M    V   +V    ++P C     L LG   H 
Sbjct: 272 SISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHG 331

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             ++ G   +  + + L+ MY KCG++   RK+FD++     ++W A+I G+A +G    
Sbjct: 332 YVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHE 391

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG----FGSNPFLNN 187
            + L+ EMK  GV P+ V FV VL++C+H     VGL  E     N     +G N  L +
Sbjct: 392 AVSLFEEMKRQGVKPNQVAFVAVLTACSH-----VGLVDEAWGYFNSMTKVYGLNQELEH 446

Query: 188 --ALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFDEML 241
             A+ ++  R G L++A      M  +   S W+ ++    +H + E+A ++ +++ 
Sbjct: 447 YAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIF 503



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 114/246 (46%), Gaps = 2/246 (0%)

Query: 80  LDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM 139
           L  +  + ++++Y     +     +F  +    ++ W ++I  +    L +  L  + EM
Sbjct: 37  LSHTSASIVISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEM 96

Query: 140 KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNL 199
           ++ G CPD   F  VL SC  +     G  V   I   G   + +  NAL+NMY++   +
Sbjct: 97  RASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGI 156

Query: 200 KKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC 259
              R +F+ MPRK VVS+  +I GY   G  E A+++  EM  S ++PD     SVL   
Sbjct: 157 DSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIF 216

Query: 260 SHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAV 319
           S      KG E  +G   + G+       + +VD+  ++ ++ ++ E + S L   D   
Sbjct: 217 SEYVDVLKGKE-IHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDS-ERVFSHLYRRDSIS 274

Query: 320 WGALLG 325
           W +L+ 
Sbjct: 275 WNSLVA 280



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 84/216 (38%), Gaps = 45/216 (20%)

Query: 10  HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCC 69
           H  V + A+I G+ L+    EAVSLF +M+ QGV+ N V  + +L  C   G        
Sbjct: 371 HDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGL------- 423

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
                   +D  +   N +  +Y     +++   + D +                  G A
Sbjct: 424 --------VDEAWGYFNSMTKVYGLNQELEHYAAVADLL------------------GRA 457

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
             + E Y  +  + V P    +  +LSSC+    H   LE+ +++    F  +     A 
Sbjct: 458 GKLEEAYDFISKMRVEPTGSVWSTLLSSCS---VHK-NLELAEKVAEKIFTIDSENMGAY 513

Query: 190 I---NMYARCGNLK-----KARAIFDGMPRKTVVSW 217
           +   NMYA  G  K     + R    G+ +K   SW
Sbjct: 514 VLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSW 549


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/509 (42%), Positives = 309/509 (60%), Gaps = 7/509 (1%)

Query: 15  YNALISGYV-LNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +N LI  Y       S +   +  M   GV  N  T   +L  C   G L LG C H   
Sbjct: 92  FNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLGKCVHGCV 151

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGS--VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           VKFG + D  V N L+ MY   G    ++  K+FD  P+   +TW+AMI+G+ + G ++ 
Sbjct: 152 VKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGFVRLGCSSR 211

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            ++L+REM+ +GVCPD +T V VLS+CA LGA  +G  VE  ++      +  L NALI+
Sbjct: 212 AVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVEKKNIPKSVELCNALID 271

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           M+A+CGN+ KA  +F  M  +T+VSWT++I G  +HG G  AV LFDEM+++GI PD  A
Sbjct: 272 MFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENGITPDDVA 331

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+ VLSACSH+GL DKG  YF  M+  + + P  EHY CMVDLL R G + EA E ++ M
Sbjct: 332 FIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCRGGFVKEAFEFVQKM 391

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
             EP+  +W  ++ AC     ++L E    ++IK EPM+   YVLLSNIY++ R  +   
Sbjct: 392 PFEPNQIIWRTIITACHATGELKLGESISKELIKSEPMHESNYVLLSNIYAKLRQWEKKT 451

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
           +VR MM  R +KK PG + +E+   ++ F+ GD++H Q  EIY M+D++   +++     
Sbjct: 452 KVREMMDMRGMKKVPGSTMIEVNNEMYEFVAGDKSHDQYKEIYEMVDEMGREIKKAGYVP 511

Query: 432 RSDQK----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
            + Q     + E+  +    HSEKLAIAF ++NT PGT I ++KNLR+C DCH   K +S
Sbjct: 512 TTSQVLLDIDEEDKEDALYRHSEKLAIAFALLNTPPGTSIRIVKNLRVCEDCHSATKFIS 571

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K+ +R+ +VRD  RFHHFK+G CSC+D+W
Sbjct: 572 KVYNREIVVRDRNRFHHFKNGLCSCRDFW 600



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 126/246 (51%), Gaps = 6/246 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+S K    TV ++A+I+G+V     S AV LF +M+  GV  + +TM+ +L  C D 
Sbjct: 184 VFDDSPKMD--TVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADL 241

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L LG        K  +     + N L+ M+ KCG+VD   KLF Q+  + +++W ++I
Sbjct: 242 GALELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVI 301

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +G A +G     + L+ EM   G+ PD V F+GVLS+C+H G    G      ++ N F 
Sbjct: 302 AGLAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERN-FS 360

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLF 237
             P + +   ++++  R G +K+A      MP     + W  II      G  ++   + 
Sbjct: 361 IVPKVEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGESIS 420

Query: 238 DEMLKS 243
            E++KS
Sbjct: 421 KELIKS 426


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/520 (41%), Positives = 319/520 (61%), Gaps = 7/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD  + S    V + +LI+ Y    L  EA+ LF +M  +GV  +  T+  +L  C   
Sbjct: 55  VFD--LMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACN 112

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  G   H    +  +  +  V N LM MY KCGS++    +F ++P K +I+WN MI
Sbjct: 113 GSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMI 172

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GY++N L    L L+ +M  L + PD  T   +L +CA L +   G EV   I  NGF 
Sbjct: 173 GGYSKNSLPNEALSLFGDM-VLEMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFF 231

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S+  + NAL++MY +CG    AR +FD +P K +++WT +I GYG+HG G  A+  F+EM
Sbjct: 232 SDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEM 291

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            ++GI PD  +F+S+L ACSH+GL D+G  +F  M+++  ++P  EHY C+VDLL R+G+
Sbjct: 292 RQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGK 351

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L  A + I+SM +EPD  +WGALL  C+IH +V+LAE     V +LEP NTGYYVLL+N 
Sbjct: 352 LAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANT 411

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+EA   + + ++R  +  R LKK+PG S++E+K +VH+F+ G+ +H Q  +I  +L +L
Sbjct: 412 YAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRL 471

Query: 421 ENLVQEHD--GTKRSDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
            + ++E       R    N++    +T +  HSEKLA+AFGI+N  P   I V KNLR+C
Sbjct: 472 RSKMKEEGYFPKTRYALINADSLQKETALCGHSEKLAMAFGILNLPPARTIRVSKNLRVC 531

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           GDCH   K +SK + R+ ++RD+ RFHHFK G C C+ +W
Sbjct: 532 GDCHEMAKFISKTLGREIVLRDSNRFHHFKDGVCCCRGFW 571



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 89/281 (31%), Positives = 146/281 (51%), Gaps = 3/281 (1%)

Query: 50  MLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP 109
           M+ +L  C + G + LG   H   VK  +    +  N L+ MY KCG +D    +FD + 
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 110 EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLE 169
            + ++TW ++I+ YA+ GL+   + L+ EM   GV PD  T   VL +CA  G+   G +
Sbjct: 61  VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKD 120

Query: 170 VEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGH 229
           V   I+ N   SN F+ NAL++MYA+CG+++ A ++F  MP K ++SW  +IGGY  +  
Sbjct: 121 VHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSL 180

Query: 230 GEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYT 289
              A+ LF +M+   ++PDGT    +L AC+     D+G E  +G   + G     +   
Sbjct: 181 PNEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKE-VHGHILRNGFFSDQQVAN 238

Query: 290 CMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
            +VD+  + G +     L+  M+   D   W  ++    +H
Sbjct: 239 ALVDMYVKCG-VPVLARLLFDMIPTKDLITWTVMIAGYGMH 278


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/510 (43%), Positives = 307/510 (60%), Gaps = 6/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+ISGYV +    EA+  F +M+E  V  N  TM+ +L  C       LG      
Sbjct: 229 VSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSW 288

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               G   +  + N L+ MY KCG  D  R+LFD + EK +I+WN MI GY+   L    
Sbjct: 289 VRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEA 348

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN-GFGSNPFLNNALIN 191
           L L+  M    V P+ VTF+G+L +CA LGA  +G  V   I  N    SN  L  +LI+
Sbjct: 349 LALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLID 408

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI-RPDGT 250
           MYA+CG ++ A  +F  M  + + SW A++ G+ +HGH E A+ LF EM+  G+ RPD  
Sbjct: 409 MYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDI 468

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            FV VLSAC+ AGL D G +YF  M   YG+ P  +HY CM+DLL RA +  EA  L+++
Sbjct: 469 TFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKN 528

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M +EPDGA+WG+LL ACK H  VE  E    ++ +LEP N G +VLLSNIY+ A   D +
Sbjct: 529 MEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDV 588

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
            R+R  + ++ +KK PG + +E+ G VH F+VGD+ H +   IY+ML++++ L++E+   
Sbjct: 589 ARIRTRLNDKGMKKVPGCTSIEIDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFV 648

Query: 431 KRSDQ----KNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
             + +     + E        HSEKLAI+FG+I T PGT I ++KNLR+CG+CH   KL+
Sbjct: 649 PNTSEVLYDMDEEWKEGALSQHSEKLAISFGLIKTKPGTTIRIVKNLRVCGNCHSATKLI 708

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SKI +R+ I RD  RFHHFK GFCSC D W
Sbjct: 709 SKIFNREIIARDRNRFHHFKDGFCSCNDCW 738



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 175/366 (47%), Gaps = 32/366 (8%)

Query: 10  HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCC 69
           H    +N+LI GY L+S    ++ LF +M   GV+ NS T   L   C        G   
Sbjct: 94  HNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQL 153

Query: 70  HCICVKFGL------------------DLDFS-------------VGNCLMTMYVKCGSV 98
           H   +K  L                  ++DF+                 L+T YV  G +
Sbjct: 154 HAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCL 213

Query: 99  DYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC 158
           D  R+LFD++P K +++WNAMISGY Q+G     +  + EM+   V P+  T V VLS+C
Sbjct: 214 DDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSAC 273

Query: 159 AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWT 218
            H  +  +G  +   ++ NGFGSN  L NALI+MY +CG    AR +FDG+  K V+SW 
Sbjct: 274 GHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWN 333

Query: 219 AIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278
            +IGGY      E A+ LF+ ML+S ++P+   F+ +L AC+  G  D G      +   
Sbjct: 334 TMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKN 393

Query: 279 YGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAEL 338
                    +T ++D+  + G +  A  +  SM    + A W A+L    +H + E A  
Sbjct: 394 LRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSR-NLASWNAMLSGFAMHGHAERALA 452

Query: 339 AFGKVI 344
            F +++
Sbjct: 453 LFSEMV 458



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 122/292 (41%), Gaps = 38/292 (13%)

Query: 70  HCICVKFGLDLDFSVGNCLMTM--YVKCGSVDYGRKLFD---QVPEKGLITWNAMISGYA 124
           H + +K GL+    V + L+        G + Y   LF+   Q  +  +  WN++I GY+
Sbjct: 48  HSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQHHKHNVFIWNSLIRGYS 107

Query: 125 QNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF 184
            +      L L+  M   GV P++ TF  +  SC    A   G ++           NP 
Sbjct: 108 LSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPH 167

Query: 185 LNNALINMYARCGN-------------------------------LKKARAIFDGMPRKT 213
           ++ ++I+MYA  G                                L  AR +FD +P K 
Sbjct: 168 VHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKD 227

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
           VVSW A+I GY   G  E A+  F EM ++ + P+ +  V VLSAC H    + G ++  
Sbjct: 228 VVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELG-KWIG 286

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
                 G     +    ++D+  + G+ + A EL +  + E D   W  ++G
Sbjct: 287 SWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDG-IEEKDVISWNTMIG 337


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/510 (41%), Positives = 314/510 (61%), Gaps = 9/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + ++I+GY    L   +V LF +M ++G+  +  T+  +L  C   G L  G   H  
Sbjct: 318 VSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNY 377

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             +  +  D  V N LM MY KCGS+     +F ++  K +++WN MI GY++N L    
Sbjct: 378 IKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEA 437

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+ EM+     P+++T   +L +CA L A   G E+   I  NGF  +  + NAL++M
Sbjct: 438 LNLFVEMQ-YNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDM 496

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CG L  AR +FD +P K +VSWT +I GYG+HG+G  A+  F+EM  SGI PD  +F
Sbjct: 497 YLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSF 556

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +S+L ACSH+GL D+G  +F  M+N   ++P  EHY C+VDLL RAG L++A + I+ M 
Sbjct: 557 ISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMP 616

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           +EPD  +WGALL  C+I+ +V+LAE     V +LEP NTGYYVLL+NIY+EA   + + +
Sbjct: 617 IEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKK 676

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           +R  +  R L+K+PG S++E+KG+VH+F+ GD +H    +I  +L K    ++E     +
Sbjct: 677 LRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPK 736

Query: 433 SDQKNSEEHLNDTEV------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
              + +    +DTE       HSEK+A+AFGI++  PG  + V KNLR+CGDCH   K +
Sbjct: 737 --MRYALIKADDTEKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFM 794

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SK+V R  I+RD+ RFHHFK G CSC+ +W
Sbjct: 795 SKMVKRDIILRDSNRFHHFKDGSCSCRGHW 824



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 181/347 (52%), Gaps = 5/347 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N++ISGYV N L  + + LF +M   G+  +  TM+ ++  C + G L LG   H  
Sbjct: 217 ISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGY 276

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K     + ++ NCL+ MY K G+++   ++F+ + E+ +++W +MI+GYA+ GL+   
Sbjct: 277 AIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMS 336

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + L+ EM+  G+ PD  T   +L +CA  G    G +V   I+ N   S+ F++NAL++M
Sbjct: 337 VRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDM 396

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG++  A ++F  M  K +VSW  +IGGY  +     A+ LF EM +   +P+    
Sbjct: 397 YAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEM-QYNSKPNSITM 455

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
             +L AC+     ++G E  +G   + G          +VD+  + G L  A  L+  M+
Sbjct: 456 ACILPACASLAALERGQE-IHGHILRNGFSLDRHVANALVDMYLKCGALGLA-RLLFDMI 513

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLL 357
            E D   W  ++    +H     A  AF ++    +EP    +  +L
Sbjct: 514 PEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISIL 560



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 131/229 (57%), Gaps = 4/229 (1%)

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
           V+  RKLFD++ ++ +I+WN+MISGY  NGL+   L+L+ +M  LG+  D  T V V++ 
Sbjct: 201 VESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAG 260

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
           C++ G   +G  +        FG    LNN L++MY++ GNL  A  +F+ M  ++VVSW
Sbjct: 261 CSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSW 320

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMK 276
           T++I GY   G  +++V+LF EM K GI PD     ++L AC+  GL + G + + Y  +
Sbjct: 321 TSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKE 380

Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           NK  +Q        ++D+  + G + +A  +   M V+ D   W  ++G
Sbjct: 381 NK--MQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVK-DIVSWNTMIG 426


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/516 (41%), Positives = 309/516 (59%), Gaps = 19/516 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  LI+GY     V  A+ L   M++  V  N +T   +L  C  P  L  G   H  
Sbjct: 215 VTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRY 274

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ G   +  V N L+TMY KCG ++  RKLF  +P + ++TW AM++GYAQ G     
Sbjct: 275 IIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEA 334

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + L+R M+  G+ PD +TF  VL+SC+       G  + QQ+   G+  + +L +AL++M
Sbjct: 335 INLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSM 394

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGY-GIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           YA+CG++  A  +F+ M  + VV+WTAII G    HG    A++ FD+M K GI+PD   
Sbjct: 395 YAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVT 454

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F SVLSAC+H GL ++G ++F  M   YG++P  EHY+C VDLLGRAG L EA  +I SM
Sbjct: 455 FTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSM 514

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
              P  +VWGALL AC++H +VE  E A   V+KL+P + G YV LS+IY+ A   +   
Sbjct: 515 PFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAE 574

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----- 426
           +VR +M +R + K+PG S++E+ G+VH+F V D++H ++ +IY  L KL   ++E     
Sbjct: 575 KVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESEQIYVELGKLTEQIKEMGYVP 634

Query: 427 ------HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCH 480
                 HD     D++  E  L     HSE+LAI +G++ T PG  I ++KNLR+CGDCH
Sbjct: 635 DTRFVLHD----VDEEQKERILFS---HSERLAITYGLMKTPPGMPIRIVKNLRVCGDCH 687

Query: 481 LFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
              K +SK+V R+ I RDA RFHHF  G CSC D+W
Sbjct: 688 TATKFISKVVGREIIARDAQRFHHFADGVCSCGDFW 723



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 116/361 (32%), Positives = 189/361 (52%), Gaps = 7/361 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD SI+  ++ V + A+I  +V  +   EA   +  M+  G + + VT + LL    +P
Sbjct: 104 VFD-SIRDRNI-VSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNP 161

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L LG   H   V+ GL+L+  VG  L+ MY KCG +   R +FD++PEK ++TW  +I
Sbjct: 162 ELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLI 221

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GYAQ G     LEL   M+   V P+ +TF  +L  C    A   G +V + I  +G+G
Sbjct: 222 AGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYG 281

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
              ++ N+LI MY +CG L++AR +F  +P + VV+WTA++ GY   G  + A+ LF  M
Sbjct: 282 RELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRM 341

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            + GI+PD   F SVL++CS      +G      + +  G        + +V +  + G 
Sbjct: 342 QQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHA-GYNLDVYLQSALVSMYAKCGS 400

Query: 301 LNEALELIESMLVEPDGAVWGALL-GACKIHKNVELAELAFGKVIK--LEPMNTGYYVLL 357
           +++A  L+ + + E +   W A++ G C  H     A   F ++ K  ++P    +  +L
Sbjct: 401 MDDA-SLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVL 459

Query: 358 S 358
           S
Sbjct: 460 S 460



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 108/394 (27%), Positives = 183/394 (46%), Gaps = 44/394 (11%)

Query: 28  VSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNC 87
           + EA+ +   M  QG  + S     LL  C     L  G   H   +K G+  +  + N 
Sbjct: 28  LKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENT 87

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L++MY KCGS+   R++FD + ++ +++W AMI  +          + Y  MK  G  PD
Sbjct: 88  LLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPD 147

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
            VTFV +L++  +     +G +V  +I   G    P +  +L+ MYA+CG++ KAR IFD
Sbjct: 148 KVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFD 207

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            +P K VV+WT +I GY   G  +VA++L + M ++ + P+   F S+L  C+     + 
Sbjct: 208 RLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEH 267

Query: 268 GLE-YFYGMKNKYGLQ--------------PGPEH---------------YTCMVDLLGR 297
           G + + Y +++ YG +               G E                +T MV    +
Sbjct: 268 GKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQ 327

Query: 298 AGQLNEALELIESML---VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
            G  +EA+ L   M    ++PD   + ++L +C        A L  GK I  + ++ GY 
Sbjct: 328 LGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCS-----SPAFLQEGKRIHQQLVHAGYN 382

Query: 355 V------LLSNIYSEARNLDGIMRVRMMMRERRL 382
           +       L ++Y++  ++D    V   M ER +
Sbjct: 383 LDVYLQSALVSMYAKCGSMDDASLVFNQMSERNV 416


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/541 (41%), Positives = 317/541 (58%), Gaps = 37/541 (6%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++IS +   +   +A+ LF KM  + V  NSVTM+ +L  C     L  G      
Sbjct: 193 VSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSY 252

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW---------------- 116
             + G+ +D ++ N ++ MY KCGSVD  +KLFD++PE+ + +W                
Sbjct: 253 IERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAA 312

Query: 117 ---------------NAMISGYAQNGLATHVLELYREMKSLGVC-PDAVTFVGVLSSCAH 160
                          N +IS Y QNG     L ++ E++   +  PD VT V  LS+CA 
Sbjct: 313 RLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQ 372

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           LGA  +G  +   I+  G   N  L ++L++MYA+CG+L+KA  +F  +  + V  W+A+
Sbjct: 373 LGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAM 432

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           I G G+HG G+ A+ LF EM ++ ++P+   F +VL ACSHAGL D+G  +F+ M+  YG
Sbjct: 433 IAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYG 492

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           + P  +HY CMVD+LGRAG L EA+ELI  M   P  +VWGALLGAC +H NVEL ELA 
Sbjct: 493 VVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELAS 552

Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400
            +++KLEP N G  VLLSNIY++    + +  +R +MR+  LKK+PG S +E  G VH F
Sbjct: 553 DQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVHEF 612

Query: 401 MVGDRNHHQTVEIYRMLDKLENLVQE---HDGTKRSDQKNSEEHLNDT--EVHSEKLAIA 455
           +VGD  H  +  IY  L+++   ++            Q   E+ L +    +HSEKLAIA
Sbjct: 613 LVGDNTHPLSSNIYSKLEEIATKLKSVGYEPNKSHLLQLIEEDDLKEQALSLHSEKLAIA 672

Query: 456 FGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDY 515
           FG++  +P   I V+KNLRICGDCH F KLVS++ DR  ++RD  RFHHF+ G CSC DY
Sbjct: 673 FGLVTLAPSQPIRVVKNLRICGDCHAFAKLVSRVYDRDILLRDRYRFHHFRDGHCSCMDY 732

Query: 516 W 516
           W
Sbjct: 733 W 733



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 164/349 (46%), Gaps = 35/349 (10%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEI-NSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +N LI  Y  +S   ++  +F  + ++  ++ N  T   ++    +     +G   H + 
Sbjct: 93  WNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMA 152

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           +K    +D  + N L+  Y  CG +    +LF  +  K +++WN+MIS +AQ       L
Sbjct: 153 IKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDAL 212

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
           EL+ +M+   V P++VT VGVLS+CA       G  V   I+  G   +  L NA+++MY
Sbjct: 213 ELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMY 272

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGI--------------------------- 226
            +CG++  A+ +FD MP + V SWT ++ GY                             
Sbjct: 273 TKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLIS 332

Query: 227 ----HGHGEVAVQLFDEMLKSGI-RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281
               +G  + A+ +F+E+  S I +PD    VS LSAC+  G  D G  + +    + G+
Sbjct: 333 AYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLG-GWIHVYIKREGI 391

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
                  + +VD+  + G L +ALE+  S + E D  VW A++    +H
Sbjct: 392 VLNCHLISSLVDMYAKCGSLEKALEVFYS-VEERDVYVWSAMIAGLGMH 439



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 7/249 (2%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC---PDAVTFV 152
            ++DY R LFDQ+P+  L TWN +I  YA +        ++ ++  L  C   P+  TF 
Sbjct: 73  STLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDL--LDKCEDLPNKFTFP 130

Query: 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK 212
            V+ + + L A  VG  V        FG + ++ N+L+  Y  CG+L  A  +F G+  K
Sbjct: 131 FVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCK 190

Query: 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF 272
            VVSW ++I  +      E A++LF +M +  + P+    V VLSAC+     + G  + 
Sbjct: 191 DVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFG-RWV 249

Query: 273 YGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKN 332
                + G++        M+D+  + G +++A +L + M  E D   W  +L       +
Sbjct: 250 CSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEM-PERDVFSWTIMLDGYAKMGD 308

Query: 333 VELAELAFG 341
            + A L F 
Sbjct: 309 YDAARLVFN 317


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/541 (41%), Positives = 319/541 (58%), Gaps = 37/541 (6%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++I+ +V      EA+ LF +M  Q V+ N +TM+ +L  C        G   H  
Sbjct: 203 VSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSY 262

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW---------------- 116
             +  +    ++ N ++ MY KCGSV+  ++LFD++PEK +++W                
Sbjct: 263 IERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAA 322

Query: 117 ---------------NAMISGYAQNGLATHVLELYREMK-SLGVCPDAVTFVGVLSSCAH 160
                          NA+IS Y Q G     LEL+ E++ S    PD VT V  LS+CA 
Sbjct: 323 QGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQ 382

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           LGA  +G  +   I+  G   N  L  +LI+MY +CG+L+KA  +F  + RK V  W+A+
Sbjct: 383 LGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAM 442

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           I G  +HGHG+ A+ LF +M +  ++P+   F ++L ACSH GL ++G  +F  M+  YG
Sbjct: 443 IAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYG 502

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           + PG +HY CMVD+LGRAG L EA+ELIE M + P  +VWGALLGAC IH+NV LAE A 
Sbjct: 503 VLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQAC 562

Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400
            ++I+LEP N G YVLLSNIY++A   D +  +R +MR+  LKK+PG S +E+ G VH F
Sbjct: 563 SQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEF 622

Query: 401 MVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD---QKNSEEHLNDTE--VHSEKLAIA 455
           +VGD +H    +IY  LD++   ++            Q   EE + +    +HSEKLAIA
Sbjct: 623 LVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIA 682

Query: 456 FGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDY 515
           FG+I+T     I ++KNLR+CGDCH   KLVSK+ DR+ ++RD  RFHHF+ G CSC DY
Sbjct: 683 FGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHCSCMDY 742

Query: 516 W 516
           W
Sbjct: 743 W 743



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/376 (28%), Positives = 179/376 (47%), Gaps = 37/376 (9%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEI-NSVTMLCLLPICVD 59
           VFD+       T  +N LI  Y  +S   +++ +F +M  Q  +  +  T   L+    +
Sbjct: 91  VFDQIPHPNLYT--WNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASE 148

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              L+ G   H + +K  L  D  + N L+  Y KCG +  G ++F  +P + +++WN+M
Sbjct: 149 LEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSM 208

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I+ + Q G     LEL++EM++  V P+ +T VGVLS+CA       G  V   I+ N  
Sbjct: 209 ITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRI 268

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
           G +  L+NA+++MY +CG+++ A+ +FD MP K +VSWT ++ GY   G  + A  +FD 
Sbjct: 269 GESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDA 328

Query: 240 M--------------------------------LKSGIRPDGTAFVSVLSACSHAGLTDK 267
           M                                L    +PD    VS LSAC+  G  D 
Sbjct: 329 MPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDL 388

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           G  + +    K G++      T ++D+  + G L +AL +  S +   D  VW A++   
Sbjct: 389 G-GWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHS-VERKDVFVWSAMIAGL 446

Query: 328 KIHKNVELAELAFGKV 343
            +H + + A   F K+
Sbjct: 447 AMHGHGKDAIALFSKM 462



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 118/239 (49%), Gaps = 12/239 (5%)

Query: 97  SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY-REMKSLGVCPDAVTFVGVL 155
           S+DY +++FDQ+P   L TWN +I  YA +      L ++ R +      PD  TF  ++
Sbjct: 84  SLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLI 143

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
            + + L     G      +     GS+ F+ N+LI+ YA+CG L     +F  +PR+ VV
Sbjct: 144 KAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVV 203

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG-LEYFYG 274
           SW ++I  +   G  E A++LF EM    ++P+G   V VLSAC+     + G   + Y 
Sbjct: 204 SWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYI 263

Query: 275 MKNKYGLQPGPEHYT---CMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL-GACKI 329
            +N+ G     E  T    M+D+  + G + +A  L + M  E D   W  +L G  KI
Sbjct: 264 ERNRIG-----ESLTLSNAMLDMYTKCGSVEDAKRLFDKM-PEKDIVSWTTMLVGYAKI 316


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/508 (41%), Positives = 322/508 (63%), Gaps = 5/508 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           VC+  +I+G   N    EAV ++ +M ++ VE + V ML L+  C   G+  +G+  H  
Sbjct: 172 VCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGY 231

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++  + +D  V   L+ MY K G ++    +F ++  K +I+W+A+ISG+AQNG A + 
Sbjct: 232 MIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNA 291

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+L  +M+S G  PD+V+ V VL +C+ +G   +G  V   I       +   + A+I+M
Sbjct: 292 LQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYI-VRRLHFDCVSSTAVIDM 350

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++CG+L  AR +FD +  +  +SW AII  YGIHG GE A+ LF +M ++ ++PD   F
Sbjct: 351 YSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATF 410

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S+LSA SH+GL +KG  +F  M N+Y +QP  +HY CMVDLL RAG++ EA ELIESM+
Sbjct: 411 ASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMI 470

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            EP  A+W ALL  C  H    + E+A  KV++L P + G Y L+SN ++ AR  D +  
Sbjct: 471 TEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFATARRWDEVAE 530

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR +M++  +KK PGYS +E+ G++H F++ D++HHQ  EI ++L KL+  ++      +
Sbjct: 531 VRKIMKKTGMKKVPGYSVMEVNGKLHAFLMEDKSHHQYEEIMQVLGKLDYEMKAMGYVPK 590

Query: 433 SD--QKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
           ++    N EE + +  +  HSE+LAIAFG++NT PGT +++ KNLR+CGDCH   K +SK
Sbjct: 591 TEFVLHNLEEEVKERMLCNHSERLAIAFGLLNTGPGTRLLITKNLRVCGDCHEATKFISK 650

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           IV+R+ +VRD  RFHHFK G CSC DYW
Sbjct: 651 IVNREIVVRDVKRFHHFKDGVCSCGDYW 678



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 108/365 (29%), Positives = 180/365 (49%), Gaps = 17/365 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+S +       +NA+I  Y     + EA+SL+ +M  +GV  +S T   +L  C   
Sbjct: 61  VFDKSPQCG--VDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRS 118

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G       V  G   D  VG  ++ +Y KCG +D   ++FD++  + L+ W  MI
Sbjct: 119 LDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMI 178

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +G AQNG A   +++YR+M    V  D V  +G++ +C  LG   +GL +   +      
Sbjct: 179 TGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDII 238

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            +  +  +L++MYA+ G+L+ A  +F  M  K V+SW+A+I G+  +G    A+QL  +M
Sbjct: 239 MDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDM 298

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC-----MVDLL 295
              G +PD  + VSVL ACS  G    G       K+ +G      H+ C     ++D+ 
Sbjct: 299 QSFGYKPDSVSLVSVLLACSQVGFLKLG-------KSVHGYIVRRLHFDCVSSTAVIDMY 351

Query: 296 GRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV--IKLEPMNTGY 353
            + G L+ A  + + +    D   W A++ +  IH + E A   F ++    ++P +  +
Sbjct: 352 SKCGSLSFARTVFDQISFR-DSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATF 410

Query: 354 YVLLS 358
             LLS
Sbjct: 411 ASLLS 415



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 122/237 (51%), Gaps = 2/237 (0%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L+  Y + G ++  R++FD+ P+ G+  WNAMI  Y++ G     L LY  M S GV PD
Sbjct: 45  LIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPD 104

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
           + T+  VL +C        G E  +Q    G+G + F+  A++N+YA+CG + +A  +FD
Sbjct: 105 SSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFD 164

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            M R+ +V WT +I G   +G    AV ++ +M K  +  DG   + ++ AC+  G +  
Sbjct: 165 KMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKM 224

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
           GL   +G   +  +       T +VD+  + G L  A  +   ML + +   W AL+
Sbjct: 225 GLS-IHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYK-NVISWSALI 279



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 11/144 (7%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+   S   ++ +NA+I+ Y ++    EA+SLF +MRE  V+ +  T   LL      
Sbjct: 363 VFDQI--SFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHS 420

Query: 61  GYLWLGMCCHCICV-KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQ-VPEKGLITWNA 118
           G +  G     I V ++ +        C++ +  + G V+  ++L +  + E G+  W A
Sbjct: 421 GLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVA 480

Query: 119 MISGYAQNG-------LATHVLEL 135
           ++SG   +G        A  VLEL
Sbjct: 481 LLSGCLNHGKFLIGEMAAKKVLEL 504


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/508 (43%), Positives = 315/508 (62%), Gaps = 8/508 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           + A ISGYV      EA+ +F ++ E G+  +S +++ +L  C   G L  G        
Sbjct: 177 WTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYIT 236

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           + G+  +  V   L+  Y KCG+++  R +FD + EK +++W++MI GYA NGL    L+
Sbjct: 237 ENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALD 296

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+ +M + G+ PD    VGVL SCA LGA  +G      I  N F  N  L  ALI+MYA
Sbjct: 297 LFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYA 356

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG + +A  +F GM +K  V W A I G  + GH + A+ LF +M KSGI+PD   FV 
Sbjct: 357 KCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVG 416

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           +L AC+HAGL ++G  YF  M+  + L P  EHY CMVDLLGRAG L+EA +LI+SM +E
Sbjct: 417 LLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPME 476

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
            +  VWGALLG C++H++ +L E+   K+I LEP ++G YVLLSNIY+ +   +   ++R
Sbjct: 477 ANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIR 536

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD 434
            +M ER +KK PGYS++E+ G VH F+VGD +H  + +IY  L +L   ++       +D
Sbjct: 537 SIMSERGVKKIPGYSWIEVDGVVHQFLVGDTSHPLSEKIYAKLGELAKDLKAAGYVPTTD 596

Query: 435 ------QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
                 ++  +EH      HSEKLA+AFG+I+T+P  +I+V+KNLR+CGDCH  IK +S+
Sbjct: 597 HVLFDIEEEEKEHF--IGCHSEKLAVAFGLISTAPNDKILVVKNLRVCGDCHEAIKHISR 654

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           I  R+ IVRD  RFH F  G CSCKDYW
Sbjct: 655 IAGREIIVRDNNRFHCFTDGLCSCKDYW 682



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 187/345 (54%), Gaps = 4/345 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N +I G VLN    E++ ++  MR++G+  +S T   +L  C       LG+  H + V
Sbjct: 76  FNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVV 135

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K G + D  V   L+ +Y KCG +D   K+FD +P+K   +W A ISGY   G     ++
Sbjct: 136 KAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAID 195

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           ++R +  +G+ PD+ + V VLS+C   G    G  +++ I  NG   N F+  AL++ Y 
Sbjct: 196 MFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYG 255

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CGN+++AR++FDGM  K +VSW+++I GY  +G  + A+ LF +ML  G++PD  A V 
Sbjct: 256 KCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVG 315

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VL +C+  G  + G ++   + N           T ++D+  + G+++ A E+   M  +
Sbjct: 316 VLCSCARLGALELG-DWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMR-K 373

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLL 357
            D  VW A +    +  +V+ A   FG++ K  ++P    +  LL
Sbjct: 374 KDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLL 418



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 127/255 (49%), Gaps = 2/255 (0%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   ++ GLD D  + N ++      G+ +Y  ++ DQ  E  +  +N MI G   N   
Sbjct: 30  HAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLNDCF 89

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              +E+Y  M+  G+ PD+ TF  VL +CA +    +G+++   +   G  ++ F+  +L
Sbjct: 90  QESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKISL 149

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           IN+Y +CG +  A  +FD +P K   SWTA I GY   G    A+ +F  +L+ G+RPD 
Sbjct: 150 INLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDS 209

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
            + V VLSAC   G    G E+      + G+       T +VD  G+ G +  A  + +
Sbjct: 210 FSLVEVLSACKRTGDLRSG-EWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFD 268

Query: 310 SMLVEPDGAVWGALL 324
            ML E +   W +++
Sbjct: 269 GML-EKNIVSWSSMI 282



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 8/115 (6%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM----C 68
           V +NA ISG  ++  V +A+ LFG+M + G++ +  T + LL  C   G +  G      
Sbjct: 377 VVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNS 436

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP-EKGLITWNAMISG 122
             C+   F L  +     C++ +  + G +D   +L   +P E   I W A++ G
Sbjct: 437 MECV---FTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGG 488


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/510 (42%), Positives = 324/510 (63%), Gaps = 6/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +N +I+G+  N +  EA+ +  +M + G ++ +S T+  +LPI  +   +  G   H 
Sbjct: 192 VSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHG 251

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             V+ G D D  +G+ L+ MY KC  ++   + F  +P K  I+WN++I+G  QNG    
Sbjct: 252 YAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDR 311

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L  +R M    V P AV+F  V+ +CAHL A S+G ++   I   GF  N F+ ++L++
Sbjct: 312 GLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVD 371

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+CGN+K AR +FD + ++ +V+WTAII G  +HGH   AV LF+ ML+ G+RP   A
Sbjct: 372 MYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVA 431

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F++VL+ACSHAGL D+G  YF  M+  +G+ PG EHY  + DLLGRAG+L EA + I +M
Sbjct: 432 FMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNM 491

Query: 312 L-VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
             V+P G+VW  LL AC+ HK+VELAE    K++ ++  N G YVL+SNIYS A+     
Sbjct: 492 RGVQPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDA 551

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
            R+R+ MR++ LKK P  S++E+  +VH FM GD++H    +I + LD L   +++    
Sbjct: 552 ARLRIHMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVLLEQMEKEGYV 611

Query: 431 KRSDQ--KNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
             ++Q   + +E L    +  HSE+LAIA+GII+T+ GT I V+KN+R+C DCH  IK +
Sbjct: 612 IDTNQVLHDVDEELKRELLHNHSERLAIAYGIISTTAGTTIRVIKNIRVCADCHTAIKFI 671

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +KIV R+  VRD +RFHHFK+G CSC DYW
Sbjct: 672 TKIVGREITVRDNSRFHHFKNGSCSCGDYW 701



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 157/332 (47%), Gaps = 18/332 (5%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           ++++I  Y  +SL+  + S F  MR   V  N      LL       +  L    H   V
Sbjct: 78  WSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACTV 137

Query: 75  KFGLDLDFSVGNCLMTMYVKC---------------GSVDYGRKLFDQVPEKGLITWNAM 119
           + GLD D  + N L+  Y K                  +D  +K+FD +P + +++WN +
Sbjct: 138 RLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTV 197

Query: 120 ISGYAQNGLATHVLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           I+G+AQNG+    L++ REM K+  + PD+ T   +L   A     + G E+      NG
Sbjct: 198 IAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNG 257

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
           F  + F+ ++LI+MYA+C  L+ +   F  +PRK  +SW +II G   +G  +  +  F 
Sbjct: 258 FDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFR 317

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
            MLK  ++P   +F SV+ AC+H      G +  +G   + G        + +VD+  + 
Sbjct: 318 RMLKENVKPMAVSFSSVIPACAHLTALSLGRQ-LHGCIVRLGFDDNEFIASSLVDMYAKC 376

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           G +  A  + +  + + D   W A++  C +H
Sbjct: 377 GNIKMARYVFDR-IDKRDMVAWTAIIMGCAMH 407


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/520 (41%), Positives = 318/520 (61%), Gaps = 6/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+ +  +   V +  +I  Y    L  EA+ LF +M    V+ N +T++ +L  C   
Sbjct: 194 VFDKMVNKS--VVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARS 251

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L      H    + G+     + + LM +Y KCG     R LF+++PEK L  WN MI
Sbjct: 252 RDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMI 311

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +G+ ++      L L+ EM+  GV  D VT   +L +C HLGA  +G  +   I+     
Sbjct: 312 NGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIE 371

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            +  L  AL++MYA+CG+++ A  +F  MP K V++WTA+I G  + G G  A++LF EM
Sbjct: 372 VDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEM 431

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
             S ++PD   FV VL+ACSHAGL ++G+ YF  M NKYG+QP  EHY CMVD+LGRAG+
Sbjct: 432 QMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGR 491

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           + EA +LI++M + PD  V   LL AC+IH N+ +AE A  ++I+L+P N G YVLLSNI
Sbjct: 492 IAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNI 551

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           YS  +N +   ++R +M ER +KK PG S +E+ G VH F+ GD +H Q+ EIY  LD +
Sbjct: 552 YSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDM 611

Query: 421 ENLVQE----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
              ++      D ++     + +E  N+  +HSEKLAIAFG+++T+PGT I V+KNLR+C
Sbjct: 612 MRRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVC 671

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DCH  +K +S++ +R+ IVRD  RFHHF  G CSC+D+W
Sbjct: 672 SDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 711



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 101/324 (31%), Positives = 161/324 (49%), Gaps = 7/324 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF++    T  T   N++I GY   +L  +A+  +  M  QG++ +  T   L   C   
Sbjct: 96  VFNQIPNPTTFTC--NSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSC--- 150

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  G   HC   K G   D  + N LM MY  CG +   RK+FD++  K +++W  MI
Sbjct: 151 GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMI 210

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
             YAQ  L    ++L+R M+   V P+ +T V VL++CA         +V + I   G G
Sbjct: 211 GAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIG 270

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            +  L +AL+++Y +CG    AR +F+ MP K +  W  +I G+      E A+ LF+EM
Sbjct: 271 FHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEM 330

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
             SG++ D     S+L AC+H G  + G ++ +    K  ++      T +VD+  + G 
Sbjct: 331 QLSGVKGDKVTMASLLIACTHLGALELG-KWLHVYIEKEKIEVDVALGTALVDMYAKCGS 389

Query: 301 LNEALELIESMLVEPDGAVWGALL 324
           +  A+ + + M  E D   W AL+
Sbjct: 390 IESAMRVFQEM-PEKDVMTWTALI 412



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 88/167 (52%), Gaps = 3/167 (1%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
           GS+ Y R +F+Q+P     T N++I GY    L    +  Y+ M   G+ PD  TF  + 
Sbjct: 88  GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLF 147

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
            SC   G    G ++       GF S+ ++ N L+NMY+ CG L  AR +FD M  K+VV
Sbjct: 148 KSC---GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVV 204

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262
           SW  +IG Y        A++LF  M  + ++P+    V+VL+AC+ +
Sbjct: 205 SWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARS 251


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/520 (41%), Positives = 323/520 (62%), Gaps = 7/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD     T   V + ++ISGY  N    EA+ +F +MR  GV+ + + ++ +L    D 
Sbjct: 211 VFDGLYHRT--IVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDV 268

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H   +K GL+ + ++   L   Y KCG V   +  FDQ+    +I WNAMI
Sbjct: 269 DDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMI 328

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGYA+NG A   + L+  M S  + PD+VT    + + A +G+  +   ++  +  + +G
Sbjct: 329 SGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYG 388

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S+ F+N +LI+MYA+CG+++ AR +FD    K VV W+A+I GYG+HG G  A+ L+  M
Sbjct: 389 SDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVM 448

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            ++G+ P+   F+ +L+AC+H+GL  +G E F+ MK+ + + P  EHY+C+VDLLGRAG 
Sbjct: 449 KQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCMKD-FEIVPRNEHYSCVVDLLGRAGY 507

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L EA   I  + +EP  +VWGALL ACKI++ V L E A  K+  L+P NTG+YV LSN+
Sbjct: 508 LGEACAFIMKIPIEPGVSVWGALLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNL 567

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+ +   D +  VR++MRE+ L KD GYS +E+ G++  F VGD++H    EI+  L +L
Sbjct: 568 YASSCLWDCVAHVRVLMREKGLNKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDELQRL 627

Query: 421 ENLVQEHDGTKRSDQK----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
           E  ++E      ++      N EE   +   HSE++A+A+G+I+T+PGT + + KNLR C
Sbjct: 628 ERRLKEVGFVPYTESVLHDLNYEEKEENLSFHSERIAVAYGLISTAPGTTLRITKNLRAC 687

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +CH  IKL+SK+V+R+ IVRDA RFHHFK G CSC DYW
Sbjct: 688 VNCHSAIKLISKLVEREIIVRDANRFHHFKDGLCSCGDYW 727



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 156/320 (48%), Gaps = 10/320 (3%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCC--HCI 72
           +NA+I  Y  N++  + V ++  MR  GV  +  T   +L  C +   L  G+ C  H  
Sbjct: 122 WNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTE--LLDFGLSCIIHGQ 179

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K+G   D  V N L+ +Y KCG +   + +FD +  + +++W ++ISGYAQNG A   
Sbjct: 180 IIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEA 239

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L ++ +M++ GV PD +  V +L +   +     G  +   +   G    P L  +L   
Sbjct: 240 LRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAF 299

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG +  A++ FD M    V+ W A+I GY  +GH E AV LF  M+   I+PD    
Sbjct: 300 YAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTV 359

Query: 253 VSVLSACSHAGLTDKGLEYF--YGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            S + A +  G  +   ++   Y  K+ YG        T ++D+  + G +  A  + + 
Sbjct: 360 RSAVLASAQVGSLELA-QWMDDYVSKSNYGSDIFVN--TSLIDMYAKCGSVEFARRVFDR 416

Query: 311 MLVEPDGAVWGALLGACKIH 330
              + D  +W A++    +H
Sbjct: 417 N-SDKDVVMWSAMIMGYGLH 435



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 138/269 (51%), Gaps = 14/269 (5%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
           G + Y RKLFD+     +  WNA+I  Y++N +    +E+YR M+  GV PD  TF  VL
Sbjct: 102 GQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVL 161

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
            +C  L    +   +  QI   GFGS+ F+ N L+ +YA+CG++  A+ +FDG+  +T+V
Sbjct: 162 KACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIV 221

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           SWT+II GY  +G    A+++F +M  +G++PD  A VS+L A +     ++G    +G 
Sbjct: 222 SWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQG-RSIHGF 280

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVEL 335
             K GL+  P     +     + G +  A    + M    +  +W A++     + + E 
Sbjct: 281 VIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKT-TNVIMWNAMISGYAKNGHAE- 338

Query: 336 AELAFGKVIKLEPMNTGYYVLLSNIYSEA 364
                      E +N  +Y++  NI  ++
Sbjct: 339 -----------EAVNLFHYMISRNIKPDS 356



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 3/137 (2%)

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
           ++  ++  +G   N FL   L+N  +  G +  AR +FD      V  W AII  Y  + 
Sbjct: 74  QIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNN 133

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEH 287
                V+++  M  +G+ PDG  F  VL AC+   L D GL    +G   KYG       
Sbjct: 134 MYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTE--LLDFGLSCIIHGQIIKYGFGSDVFV 191

Query: 288 YTCMVDLLGRAGQLNEA 304
              +V L  + G +  A
Sbjct: 192 QNGLVALYAKCGHIGVA 208


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/508 (43%), Positives = 314/508 (61%), Gaps = 9/508 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           ++ ++ G+      +   + F ++   GV  ++ T+  ++  C D   L +G   H + +
Sbjct: 69  WSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVL 128

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K GL  D  V   L+ MY KC  V+  ++LF+++  K L+TW  MI  YA    A   L 
Sbjct: 129 KHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCN-AYESLV 187

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+  M+  GV PD V  V V+++CA LGA          I  NGF  +  L  A+I+MYA
Sbjct: 188 LFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYA 247

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG+++ AR +FD M  K V+SW+A+I  YG HG G+ A+ LF  ML   I P+   FVS
Sbjct: 248 KCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVS 307

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           +L ACSHAGL ++GL +F  M  ++ ++P  +HYTCMVDLLGRAG+L+EAL LIE+M VE
Sbjct: 308 LLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVE 367

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
            D  +W ALLGAC+IH  +ELAE A   +++L+P N G+YVLLSNIY++A   + + + R
Sbjct: 368 KDERLWSALLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFR 427

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML----DKLE--NLVQEHD 428
            MM +R+LKK PG++++E+  + + F VGDR+H Q+ EIY ML     KLE    V + D
Sbjct: 428 DMMTQRKLKKIPGWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAGYVPDTD 487

Query: 429 GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
              +  ++  ++ +  T  HSEKLAIAFG+I    G  I + KNLR+CGDCH F K+VS 
Sbjct: 488 FVLQDVEEEVKQEMLYT--HSEKLAIAFGLIAIPEGEPIRISKNLRVCGDCHTFSKMVSS 545

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           I+ R  IVRDA RFHHF  G CSC DYW
Sbjct: 546 IMRRSIIVRDANRFHHFNDGTCSCGDYW 573



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 127/262 (48%), Gaps = 5/262 (1%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   V  G   D  + N L+  Y +  ++D    LFD +  +   TW+ M+ G+A+ G  
Sbjct: 23  HAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKAGDH 82

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
                 +RE+   GV PD  T   V+ +C       +G  +   +  +G  S+ F+  +L
Sbjct: 83  AGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVCASL 142

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++MYA+C  ++ A+ +F+ M  K +V+WT +IG Y      E  V LFD M + G+ PD 
Sbjct: 143 VDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNAYESLV-LFDRMREEGVVPDK 201

Query: 250 TAFVSVLSACSHAGLTDKG-LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
            A V+V++AC+  G   +      Y ++N + L       T M+D+  + G +  A E+ 
Sbjct: 202 VAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILG--TAMIDMYAKCGSVESAREVF 259

Query: 309 ESMLVEPDGAVWGALLGACKIH 330
           + M  E +   W A++ A   H
Sbjct: 260 DRM-KEKNVISWSAMIAAYGYH 280



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 6/160 (3%)

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
           +V   + ANG   +  + N L+  YA+   +  A ++FDG+  +   +W+ ++GG+   G
Sbjct: 21  QVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKAG 80

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY 288
                   F E+L+ G+ PD      V+  C        G    + +  K+GL    +H+
Sbjct: 81  DHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIG-RVIHDVVLKHGLL--SDHF 137

Query: 289 TC--MVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
            C  +VD+  +   + +A  L E ML   D   W  ++GA
Sbjct: 138 VCASLVDMYAKCIVVEDAQRLFERML-SKDLVTWTVMIGA 176


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/510 (43%), Positives = 306/510 (60%), Gaps = 9/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++I GYV +     A+ +F KM ++GV+  +VT++  L  C D G L  G   H +
Sbjct: 198 VSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKL 257

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             +  LD D SV N L++MY KC  VD    +F  +  K L++WNAMI GYAQNG     
Sbjct: 258 VDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEA 317

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L  + EM+S  + PD+ T V V+ + A L        +   +       N F+  AL++M
Sbjct: 318 LNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDM 377

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG +  AR +FD M  + V++W A+I GYG HG G+ +V+LF EM K  I+P+   F
Sbjct: 378 YAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITF 437

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +  LSACSH+GL ++GL +F  MK  YG++P  +HY  MVDLLGRAG+LN+A + I+ M 
Sbjct: 438 LCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMP 497

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           ++P   V+GA+LGACKIHKNV+L E A  ++ KL P + GY+VLL+NIY+ A     + +
Sbjct: 498 IKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAK 557

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR +M +  L+K PG S VE+   VH F  G  +H Q+ +IY     LE LV E      
Sbjct: 558 VRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYSY---LETLVDEIRAAGY 614

Query: 433 SDQKNSEEHLNDT------EVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
               NS   + D         HSEKLAIAFG++NTS GT I + KNLR+CGDCH   K +
Sbjct: 615 VPDTNSIHDVEDDVKVQLLNTHSEKLAIAFGLLNTSTGTPIHIRKNLRVCGDCHNATKYI 674

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           S +  R+ IVRD  RFH FK G CSC DYW
Sbjct: 675 SLVTGREIIVRDMHRFHLFKDGVCSCGDYW 704



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 166/318 (52%), Gaps = 2/318 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           VC+N +ISGY  N     A+ L  +M E+G   +S+T++ +LP   D   L +GM  H  
Sbjct: 97  VCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGY 156

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ G +   +V   L+ MY KCGSV   R +FD +  + +++WN+MI GY Q+G A   
Sbjct: 157 VLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGA 216

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + ++++M   GV P  VT +G L +CA LG    G  V + +      S+  + N+LI+M
Sbjct: 217 MLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISM 276

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++C  +  A  IF  +  KT+VSW A+I GY  +G    A+  F EM    I+PD    
Sbjct: 277 YSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTM 336

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           VSV+ A +   +  +  ++ +G+  +  L       T +VD+  + G ++ A +L + M+
Sbjct: 337 VSVIPALAELSIPRQA-KWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFD-MM 394

Query: 313 VEPDGAVWGALLGACKIH 330
                  W A++     H
Sbjct: 395 NARHVITWNAMIDGYGTH 412



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 152/294 (51%), Gaps = 1/294 (0%)

Query: 18  LISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFG 77
           ++ GY  +S +  A+S F +M+   V         LL +C D   L  G   H   +  G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 78  LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYR 137
              +      ++ MY KC  ++    +FD++PE+ L+ WN MISGYAQNG A   L L  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 138 EMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG 197
            M   G  PD++T V +L + A      +G+ V   +   GF S   ++ AL++MY++CG
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180

Query: 198 NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257
           ++  AR IFDGM  +TVVSW ++I GY   G  E A+ +F +ML  G++P     +  L 
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALH 240

Query: 258 ACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           AC+  G  ++G ++ + + ++  L         ++ +  +  +++ A ++ +++
Sbjct: 241 ACADLGDLERG-KFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNL 293


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/530 (43%), Positives = 334/530 (63%), Gaps = 21/530 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGV-----EINSVTMLCLLP 55
            FDE    T   V   A+ SG + N+LV   +S+F  M   G      E  ++  L    
Sbjct: 146 AFDEI--PTPNPVIVTAMASGCMRNNLVYTTLSIFRSMVASGSAGVVDEAAALVALSASA 203

Query: 56  ICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYG--RKLFDQVPEKGL 113
              D G   +    H +  K GLD    V N ++  Y K G  D G  RKLFD + ++ +
Sbjct: 204 RVPDRG---ITGGIHALVSKIGLDGQTGVANTIIDAYAKGGGHDLGAARKLFDMM-DRDV 259

Query: 114 ITWNAMISGYAQNGLATHVLELYREMKSLG--VCPDAVTFVGVLSSCAHLGAHSVGLEVE 171
           ++WN MI+ YAQNGL+T  L LY +M  +G  V  +AVT   VL +CAH GA   G  + 
Sbjct: 260 VSWNTMIALYAQNGLSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIH 319

Query: 172 QQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGE 231
            Q+   G   N ++  ++++MY++CG ++ A   F  +  K ++SW+A+I GYG+HG+G+
Sbjct: 320 NQVVRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQ 379

Query: 232 VAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCM 291
            A+ +F +M KSG++P+   F++VL+ACSHAGL  +G  ++  MK ++G++PG EHY CM
Sbjct: 380 EALHVFTDMRKSGLKPNYITFITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCM 439

Query: 292 VDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351
           VDLLGRAG L+EA  LI+ M V+PD A+WGALL AC+I+KNVELA++   ++ +L+  N+
Sbjct: 440 VDLLGRAGCLDEAYGLIKEMKVKPDAALWGALLSACRIYKNVELAKICAERLFELDATNS 499

Query: 352 GYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTV 411
           GYYVLLSNIY+EA     + R+R++++ R ++K PGYS VELKG+ HLF VGD++H Q  
Sbjct: 500 GYYVLLSNIYAEAGMWKEVERMRVLVKTRGIEKPPGYSSVELKGKTHLFYVGDKSHPQYK 559

Query: 412 EIYRMLDKLENLVQE-----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTE 466
           EIY  L+KL   + +     + G+   D  + EE  +   +HSEKLA+AF ++N+  G+ 
Sbjct: 560 EIYAYLEKLLERIHDAGYVPNTGSVLHDL-DVEERESMLRIHSEKLAVAFALMNSVQGSV 618

Query: 467 IVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           I V+KNLR+C DCH  IK+++K+  R+ I+RD  RFHHFK G CSC DYW
Sbjct: 619 IHVIKNLRVCTDCHAAIKIITKLTGREIIIRDLKRFHHFKDGLCSCGDYW 668



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 122/272 (44%), Gaps = 10/272 (3%)

Query: 66  GMCCHCICVKFGL-DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYA 124
           G   H + ++ GL   D    + L+ MY  C      R+ FD++P    +   AM SG  
Sbjct: 107 GRQLHLLALRSGLFPSDAYCASALLHMYHHCFRPLDARRAFDEIPTPNPVIVTAMASGCM 166

Query: 125 QNGLATHVLELYREMKSLGVCP--DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN 182
           +N L    L ++R M + G     D    +  LS+ A +    +   +   +   G    
Sbjct: 167 RNNLVYTTLSIFRSMVASGSAGVVDEAAALVALSASARVPDRGITGGIHALVSKIGLDGQ 226

Query: 183 PFLNNALINMYARCG--NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
             + N +I+ YA+ G  +L  AR +FD M R  VVSW  +I  Y  +G    A+ L+ +M
Sbjct: 227 TGVANTIIDAYAKGGGHDLGAARKLFDMMDRD-VVSWNTMIALYAQNGLSTEALGLYSKM 285

Query: 241 LKSG--IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
           L  G  +R +     +VL AC+HAG    G +  +    + GL+      T +VD+  + 
Sbjct: 286 LIVGGDVRCNAVTLSAVLLACAHAGAIQTG-KRIHNQVVRMGLEDNVYVGTSVVDMYSKC 344

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           G++  A +  + +  + +   W A++    +H
Sbjct: 345 GKVEMAWKAFQKIKGK-NILSWSAMIAGYGMH 375


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/545 (40%), Positives = 328/545 (60%), Gaps = 45/545 (8%)

Query: 14  CYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
            + ALI  Y L   +S+A+S +  MR++ V   S T   L   C    +  LG   H   
Sbjct: 76  AWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHAQT 135

Query: 74  VKFG-LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE---------------------- 110
           +  G    D  V N ++ MYVKCGS+   R +FD++PE                      
Sbjct: 136 LLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAA 195

Query: 111 ---------KGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL 161
                    K ++TW AM++GYAQN +    LE++R ++  GV  D VT VGV+S+CA L
Sbjct: 196 RDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQL 255

Query: 162 GAHSVGLEVEQQIQANGFG--SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
           GA      +    +++GFG   N  + +ALI+MY++CGN+++A  +F GM  + V S+++
Sbjct: 256 GASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSS 315

Query: 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279
           +I G+ IHG    A++LF +ML++G++P+   FV VL+ACSHAGL D+G + F  M+  Y
Sbjct: 316 MIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCY 375

Query: 280 GLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELA 339
           G+ P  E Y CM DLL RAG L +AL+L+E+M +E DGAVWGALLGA  +H N ++AE+A
Sbjct: 376 GVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIA 435

Query: 340 FGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELK-GRVH 398
             ++ +LEP N G Y+LLSN Y+ A   D + +VR ++RE+ LKK+PG+S+VE K G +H
Sbjct: 436 SKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVEAKNGMIH 495

Query: 399 LFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEH-LNDTE------VHSEK 451
            F+ GD +H +  EI +   +L +L++   G       +S  + +ND E       HSEK
Sbjct: 496 KFVAGDVSHPKINEIKK---ELNDLLERLKGIGYQPNLSSLPYGINDREKRLLLMAHSEK 552

Query: 452 LAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCS 511
           LA+AFG+++T  G+ I +MKNLRIC DCH+ +   SK+  R+ +VRD TRFHHF +G CS
Sbjct: 553 LALAFGLLSTDVGSTIKIMKNLRICEDCHIVMCGASKVTGRKIVVRDNTRFHHFLNGACS 612

Query: 512 CKDYW 516
           C ++W
Sbjct: 613 CSNFW 617



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 128/225 (56%), Gaps = 4/225 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+++GY  N++  +A+ +F ++R++GVEI+ VT++ ++  C   G          I
Sbjct: 208 VTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDI 267

Query: 73  CVK--FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
                FG+  +  VG+ L+ MY KCG+V+    +F  + E+ + ++++MI G+A +G A 
Sbjct: 268 AESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRAR 327

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA-NGFGSNPFLNNAL 189
             ++L+ +M   GV P+ VTFVGVL++C+H G    G ++   ++   G      L   +
Sbjct: 328 AAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTAELYACM 387

Query: 190 INMYARCGNLKKARAIFDGMPRKTV-VSWTAIIGGYGIHGHGEVA 233
            ++ +R G L+KA  + + MP ++    W A++G   +HG+ +VA
Sbjct: 388 TDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVA 432



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 112/246 (45%), Gaps = 35/246 (14%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           Y R LF Q+       W A+I  YA  G  +  L  Y  M+   V P + TF  + S+CA
Sbjct: 61  YPRLLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACA 120

Query: 160 HLGAHSVGLEVE-QQIQANGFGSNPFLNNALINMYARCGNL------------------- 199
            +   ++G ++  Q +   GF S+ ++NNA+I+MY +CG+L                   
Sbjct: 121 AVRHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWT 180

Query: 200 ------------KKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
                       + AR +FDG+P K +V+WTA++ GY  +     A+++F  +   G+  
Sbjct: 181 GLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEI 240

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY--TCMVDLLGRAGQLNEAL 305
           D    V V+SAC+  G   K   +   +    G   G      + ++D+  + G + EA 
Sbjct: 241 DEVTLVGVISACAQLG-ASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAY 299

Query: 306 ELIESM 311
           ++ + M
Sbjct: 300 DVFKGM 305


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/512 (43%), Positives = 309/512 (60%), Gaps = 17/512 (3%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NA+I G        EA+SLF +MR +G   ++ T + +L   V    L      H   +
Sbjct: 404 WNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAI 463

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             GL +D  VGN L+ MY KCG+  Y +++FD + E+ + TW  MISG AQ+G       
Sbjct: 464 DAGL-VDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFS 522

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+ +M   G+ PDA T+V +LS+CA  GA     EV       G  S+  + NAL++MYA
Sbjct: 523 LFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYA 582

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG++  AR +FD M  + V SWT +IGG   HG G  A+ LF +M   G +P+G +FV+
Sbjct: 583 KCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVA 642

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VLSACSHAGL D+G   F  +   YG++P  EHYTCMVDLLGRAGQL EA   I +M +E
Sbjct: 643 VLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIE 702

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
           P  A WGALLGAC  + N+E+AE A  + +KL+P +   YVLLSNIY+   N +  + VR
Sbjct: 703 PGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVR 762

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT---- 430
            MM+ R ++K+PG S++E+  ++H F+VGD +H ++ EIY    KL++L++         
Sbjct: 763 SMMQRRGIRKEPGRSWIEVDNQIHSFVVGDTSHPESKEIYA---KLKDLIKRLKAEGYVP 819

Query: 431 ------KRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
                 + +DQ+  E+ L     HSEKLAI +G+++T     I V KNLR+C DCH   K
Sbjct: 820 DTRLVLRNTDQEYKEQALCS---HSEKLAIVYGLMHTPYRNPIRVYKNLRVCSDCHTATK 876

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +SK+  R+ + RDA RFHHFK G CSC DYW
Sbjct: 877 FISKVTGREIVARDAKRFHHFKDGVCSCGDYW 908



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 160/312 (51%), Gaps = 8/312 (2%)

Query: 18  LISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFG 77
           +I GY       +A+ ++ +MR +G + N +T L +L  C  P  L  G   H   ++ G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 78  LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYR 137
              D  V   L+ MYVKCGS+D  + +FD++ E+ +I+W  MI G A  G        + 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 138 EMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG 197
           +M+  G  P++ T+V +L++ A  GA     EV       G   +  + NAL++MYA+ G
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 198 NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257
           ++  AR +FDGM  + + SWT +IGG   HG G+ A  LF +M + G  P+ T ++S+L+
Sbjct: 181 SIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILN 240

Query: 258 ACSHAGLTDKG-LEY---FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           A   + +T  G LE+    +    K G          ++ +  + G +++A  + + M  
Sbjct: 241 A---SAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGM-C 296

Query: 314 EPDGAVWGALLG 325
           + D   W A++G
Sbjct: 297 DRDVISWNAMIG 308



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/333 (30%), Positives = 165/333 (49%), Gaps = 6/333 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD+ ++     + +  +I G        EA   F +M+ +G   NS T + +L      
Sbjct: 87  IFDKMVERN--VISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASA 144

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L      H   V  GL LD  VGN L+ MY K GS+D  R +FD + E+ + +W  MI
Sbjct: 145 GALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMI 204

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA--HLGAHSVGLEVEQQIQANG 178
            G AQ+G       L+ +M+  G  P+  T++ +L++ A    GA     EV +     G
Sbjct: 205 GGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAG 264

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
           F S+  + NALI+MYA+CG++  AR +FDGM  + V+SW A+IGG   +G G  A  +F 
Sbjct: 265 FISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFL 324

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
           +M + G  PD T ++S+L+     G  +  ++  +    + GL       +  V +  R 
Sbjct: 325 KMQQEGFVPDSTTYLSLLNTHVSTGAWE-WVKEVHKHAVEVGLVSDLRVGSAFVHMYIRC 383

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHK 331
           G +++A +LI   L   +   W A++G     K
Sbjct: 384 GSIDDA-QLIFDKLAVRNVTTWNAMIGGVAQQK 415



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 125/420 (29%), Positives = 186/420 (44%), Gaps = 47/420 (11%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLL--PICV 58
           VFD  ++    +  +  +I G   +    EA SLF +M   G   N  T L +L      
Sbjct: 188 VFDGMVERDIFS--WTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAIT 245

Query: 59  DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
             G L      H    K G   D  VGN L+ MY KCGS+D  R +FD + ++ +I+WNA
Sbjct: 246 STGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNA 305

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           MI G AQNG       ++ +M+  G  PD+ T++ +L++    GA     EV +     G
Sbjct: 306 MIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVG 365

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
             S+  + +A ++MY RCG++  A+ IFD +  + V +W A+IGG      G  A+ LF 
Sbjct: 366 LVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFL 425

Query: 239 EMLKSGIRPDGTAFVSVLSA----------------CSHAGLTD----KGLEYFYG---- 274
           +M + G  PD T FV++LSA                   AGL D      L + Y     
Sbjct: 426 QMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVGNALVHMYAKCGN 485

Query: 275 -MKNKYGLQPGPEH----YTCMVDLLGRAGQLNEALELIESMLVE---PDGAVWGALLGA 326
            M  K       E     +T M+  L + G  +EA  L   ML E   PD   + ++L A
Sbjct: 486 TMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSA 545

Query: 327 CKIHKNVELAELAFGKVIKLEPMNTGYYV------LLSNIYSEARNLDGIMRVRMMMRER 380
           C          L + K +    +N G          L ++Y++  ++D   RV   M ER
Sbjct: 546 C-----ASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLER 600


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/506 (42%), Positives = 311/506 (61%), Gaps = 4/506 (0%)

Query: 15   YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
            +N +I G+  +     ++ L+ KM E+G++ +       L  C     L  G   H   V
Sbjct: 786  WNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLV 845

Query: 75   KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
              G   D  V   L+ MY KCG ++  R +FD++  + L++W +MISGYA NG  +  L 
Sbjct: 846  CCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLG 905

Query: 135  LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
             +  M+S GV P+ V+ + VL +C +LGA   G      +   GF  +  +  A+++MY+
Sbjct: 906  FFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYS 965

Query: 195  RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
            +CG+L  AR +FD    K +V W+A+I  YGIHGHG  A+ LFD+M+K+G+RP    F  
Sbjct: 966  KCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTC 1025

Query: 255  VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
            VLSACSH+GL ++G  YF  M  ++ +     +Y CMVDLLGRAGQL+EA++LIE+M VE
Sbjct: 1026 VLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVE 1085

Query: 315  PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
            PD ++WG+LLGAC+IH N++LAE     +  L+P++ GY+VLLSNIY+     + + +VR
Sbjct: 1086 PDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVR 1145

Query: 375  MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD 434
             MM  R   K  G+S VE   +VH F VGDR+H Q  ++Y  L++L   ++       +D
Sbjct: 1146 KMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTD 1205

Query: 435  --QKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIV 490
                + EE   +  +  HSE+LAIAFG+INTSPGT + + KNLRICGDCH  IKL+SKIV
Sbjct: 1206 FVLHDIEEEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIV 1265

Query: 491  DRQFIVRDATRFHHFKSGFCSCKDYW 516
            +R  +VRD  RFH F+ G CSC DYW
Sbjct: 1266 NRVILVRDMHRFHRFEDGVCSCGDYW 1291



 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 176/411 (42%), Positives = 260/411 (63%), Gaps = 1/411 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            + ++ +I+ Y  N   +EA++LF +M E+  E NSVT++  L  C     L  G   H 
Sbjct: 272 VISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHK 331

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           I V  G +LDFSV   L+ MY+KC   D    LF ++P+K +++W A++SGYAQNG+A  
Sbjct: 332 IAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYK 391

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            + ++R M S G+ PDAV  V +L++ + LG     L +   +  +GF SN F+  +LI 
Sbjct: 392 SMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIE 451

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK-SGIRPDGT 250
           +Y++CG+L  A  +F GM  + VV W+++I  YGIHG G  A+++FD+M+K S +RP+  
Sbjct: 452 LYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNV 511

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            F+S+LSACSHAGL ++GL+ F  M + Y L+P  EH+  MVDLLGR GQL +A+++I  
Sbjct: 512 TFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINR 571

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M +     VWGALLGAC+IH N+E+ E A   +  L+P + GYY+LLSNIY+     D +
Sbjct: 572 MPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDNV 631

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLE 421
             +R  ++ER LKK  G S VE++G VH F+  DR H  + +IY +L KLE
Sbjct: 632 AELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKIYELLRKLE 682



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 115/403 (28%), Positives = 202/403 (50%), Gaps = 10/403 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVD 59
           VF+E  +    TV + ++++GY  N+   EA++LF +M     V ++ VT++ ++  C  
Sbjct: 161 VFEEFQRPD--TVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQ 218

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              +  G C H + ++   D D  + N L+ +Y K G       LF ++PEK +I+W+ M
Sbjct: 219 LLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTM 278

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I+ YA N  A   L L+ EM      P++VT V  L +CA       G ++ +     GF
Sbjct: 279 IACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGF 338

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             +  ++ ALI+MY +C    +A  +F  +P+K VVSW A++ GY  +G    ++ +F  
Sbjct: 339 ELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRN 398

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           ML  GI+PD  A V +L+A S  G+  + L   +G   + G          +++L  + G
Sbjct: 399 MLSDGIQPDAVAVVKILAASSELGIFQQAL-CLHGYVVRSGFNSNVFVGASLIELYSKCG 457

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK---LEPMNTGYYVL 356
            L +A++L + M+V  D  +W +++ A  IH     A   F +++K   + P N  +  +
Sbjct: 458 SLGDAVKLFKGMIVR-DVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSI 516

Query: 357 LSNIYSEARNLDGIMRVRMMMRERRLKKDPGYS--YVELKGRV 397
           LS         +G+     M+ + +L+ D  +    V+L GR+
Sbjct: 517 LSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRI 559



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 173/365 (47%), Gaps = 19/365 (5%)

Query: 70   HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
            H     +GL  D  +      MYV    +D    +F+ +P      WN MI G+A +G  
Sbjct: 740  HAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRF 799

Query: 130  THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
               LELY +M   G+ PD   F   L SCA L     G  + Q +   G  ++ F++ AL
Sbjct: 800  LSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAAL 859

Query: 190  INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
            ++MYA+CG+++ AR +FD M  + +VSWT++I GY  +G+    +  FD M  SG+ P+ 
Sbjct: 860  VDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNR 919

Query: 250  TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
             + +SVL AC + G   KG E+F+    + G +      T ++D+  + G L+ A  L +
Sbjct: 920  VSILSVLLACGNLGALRKG-EWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFD 978

Query: 310  SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNL 367
                  D   W A++ +  IH +   A   F +++K  + P +  +  +LS         
Sbjct: 979  ET-AGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLE 1037

Query: 368  DGIMRVRMMMRERRL-KKDPGYS-YVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ 425
            +G M  ++M  E  + +K   Y+  V+L GR               ++   +D +EN+  
Sbjct: 1038 EGKMYFQLMTEEFVIARKLSNYACMVDLLGRAG-------------QLSEAVDLIENMPV 1084

Query: 426  EHDGT 430
            E D +
Sbjct: 1085 EPDAS 1089



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 119/231 (51%), Gaps = 2/231 (0%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
            V + ++ISGY  N   SE +  F  MR  GV  N V++L +L  C + G L  G   H  
Sbjct: 885  VSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSY 944

Query: 73   CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             ++ G + D  V   +M MY KCGS+D  R LFD+   K L+ W+AMI+ Y  +G     
Sbjct: 945  VIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKA 1004

Query: 133  LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA-LIN 191
            ++L+ +M   GV P  VTF  VLS+C+H G    G    Q +      +    N A +++
Sbjct: 1005 IDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVD 1064

Query: 192  MYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFDEML 241
            +  R G L +A  + + MP +   S W +++G   IH + ++A ++ D + 
Sbjct: 1065 LLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLF 1115



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 127/301 (42%), Gaps = 36/301 (11%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H    K G+  D      L ++Y KC S+   RK+FD+ P   +  WN+ +  Y +    
Sbjct: 24  HSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQW 83

Query: 130 THVLELYREMK-SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG-FGSNPFLNN 187
              L L+  M  + G  PD  T    L +CA L    +G  +    + N   GS+ F+ +
Sbjct: 84  EETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGS 143

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM-LKSGIR 246
           AL+ +Y++CG + +A  +F+   R   V WT+++ GY  +   E A+ LF +M +   + 
Sbjct: 144 ALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVV 203

Query: 247 PDGTAFVSVLSACSHA----------GLT-----DKGLEYFYGMKNKYG----------- 280
            D    VSV+SAC+            GL      D  L     + N Y            
Sbjct: 204 LDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANL 263

Query: 281 LQPGPEH----YTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGACKIHKNV 333
               PE     ++ M+         NEAL L   M+    EP+     + L AC + +N+
Sbjct: 264 FSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNL 323

Query: 334 E 334
           E
Sbjct: 324 E 324



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 87/182 (47%), Gaps = 6/182 (3%)

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
           ++  Q+   G   + F    L ++YA+C +L+ AR +FD  P   V  W + +  Y    
Sbjct: 22  QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREK 81

Query: 229 HGEVAVQLFDEML-KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH 287
             E  ++LF  M+  +G  PD       L AC+   + + G +  +G   K   + G + 
Sbjct: 82  QWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELG-KVIHGFAKKND-EIGSDM 139

Query: 288 Y--TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345
           +  + +V+L  + GQ+ EAL++ E     PD  +W +++   + + + E A   F +++ 
Sbjct: 140 FVGSALVELYSKCGQMGEALKVFEE-FQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVM 198

Query: 346 LE 347
           ++
Sbjct: 199 MD 200


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/515 (42%), Positives = 311/515 (60%), Gaps = 9/515 (1%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           S+   V +N +I GY  N    EA + F KM ++GVE  +V+M+  L  C + G L  G 
Sbjct: 305 SSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGR 364

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
             H +  +  +  D SV N L++MY KC  VD    +F  +  K ++TWNAMI GYAQNG
Sbjct: 365 YVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNG 424

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
                L L+ EM+S  + PD+ T V V+++ A L        +           N F+  
Sbjct: 425 CVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCT 484

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           ALI+ +A+CG ++ AR +FD M  + V++W A+I GYG +GHG  A+ LF+EM    ++P
Sbjct: 485 ALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKP 544

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           +   F+SV++ACSH+GL ++G+ YF  MK  YGL+P  +HY  MVDLLGRAG+L++A + 
Sbjct: 545 NEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKF 604

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNL 367
           I+ M V+P   V GA+LGAC+IHKNVEL E    ++  L+P + GY+VLL+N+Y+ A   
Sbjct: 605 IQDMPVKPGITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMW 664

Query: 368 DGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLEN----- 422
           D + RVR  M ++ ++K PG S VEL+  VH F  G  NH Q+  IY  L+ L +     
Sbjct: 665 DKVARVRTAMEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETLGDEMKAA 724

Query: 423 -LVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHL 481
             V + +     ++   E+ L+    HSE+LAIAFG++NT  GT I + KNLR+CGDCH 
Sbjct: 725 GYVPDTNSIHDVEEDVKEQLLSS---HSERLAIAFGLLNTRHGTAIHIRKNLRVCGDCHE 781

Query: 482 FIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
             K +S +  R+ IVRD  RFHHFK+G CSC DYW
Sbjct: 782 ATKYISLVTGREIIVRDLRRFHHFKNGICSCGDYW 816



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 162/312 (51%), Gaps = 2/312 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +++GY  N     AV +  +M+E G + +S+T++ +LP   D   L +G   H  
Sbjct: 209 VSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGY 268

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             + G +   +V   ++  Y KCGSV   R +F  +  + +++WN MI GYAQNG +   
Sbjct: 269 AFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEA 328

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
              + +M   GV P  V+ +G L +CA+LG    G  V + +     G +  + N+LI+M
Sbjct: 329 FATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISM 388

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++C  +  A ++F  +  KTVV+W A+I GY  +G    A+ LF EM    I+PD    
Sbjct: 389 YSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTL 448

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           VSV++A +   +T +  ++ +G+  +  +       T ++D   + G +  A +L + ++
Sbjct: 449 VSVITALADLSVTRQA-KWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFD-LM 506

Query: 313 VEPDGAVWGALL 324
            E     W A++
Sbjct: 507 QERHVITWNAMI 518



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 135/258 (52%)

Query: 11  LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
           L V Y+ ++ GY  NS + +AV  + +MR   V         LL +  +   L  G   H
Sbjct: 106 LDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIH 165

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
            + +  G   +      ++ +Y KC  ++   K+F+++P++ L++WN +++GYAQNG A 
Sbjct: 166 GMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFAR 225

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             +++  +M+  G  PD++T V VL + A L A  +G  +       GF     +  A++
Sbjct: 226 RAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAML 285

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           + Y +CG+++ AR +F GM  + VVSW  +I GY  +G  E A   F +ML  G+ P   
Sbjct: 286 DTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNV 345

Query: 251 AFVSVLSACSHAGLTDKG 268
           + +  L AC++ G  ++G
Sbjct: 346 SMMGALHACANLGDLERG 363



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 122/265 (46%), Gaps = 4/265 (1%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L++++ K  S+    ++F+ V  K  + ++ M+ GYA+N      +  Y  M+   V P 
Sbjct: 82  LISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPV 141

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
              F  +L           G E+   +  NGF SN F   A++N+YA+C  ++ A  +F+
Sbjct: 142 VYDFTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFE 201

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            MP++ +VSW  ++ GY  +G    AVQ+  +M ++G +PD    VSVL A +       
Sbjct: 202 RMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRI 261

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           G    +G   + G +      T M+D   + G +  A  L+   +   +   W  ++   
Sbjct: 262 G-RSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSA-RLVFKGMSSRNVVSWNTMIDGY 319

Query: 328 KIHKNVELAELAFGKVIK--LEPMN 350
             +   E A   F K++   +EP N
Sbjct: 320 AQNGESEEAFATFLKMLDEGVEPTN 344



 Score = 42.4 bits (98), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 65/152 (42%), Gaps = 2/152 (1%)

Query: 174 IQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVA 233
           I  NGF +       LI+++ +  ++ +A  +F+ +  K  V +  ++ GY  +     A
Sbjct: 67  IIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDA 126

Query: 234 VQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293
           V+ ++ M    + P    F  +L          +G E  +GM    G Q      T +V+
Sbjct: 127 VRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGRE-IHGMVITNGFQSNLFAMTAVVN 185

Query: 294 LLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           L  +  Q+ +A ++ E M  + D   W  ++ 
Sbjct: 186 LYAKCRQIEDAYKMFERM-PQRDLVSWNTVVA 216


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/508 (41%), Positives = 302/508 (59%), Gaps = 4/508 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+I+GY  + L +EA+ LF +M  QG+  +++     +  C     L  G   H  
Sbjct: 482 VSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQ 541

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               G   D S+GN L+++Y +CG        F+++  K  I+WNA+ISG+AQ+G     
Sbjct: 542 SYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEA 601

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+++ +M   GV  +  TF   +S+ A+      G ++   +   G+ S    +N LI +
Sbjct: 602 LQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITL 661

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++CG+++ A+  F  MP K VVSW A+I GY  HG+G  AV LF+EM + G+ P+   F
Sbjct: 662 YSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTF 721

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           V VLSACSH GL ++GL YF  M  ++GL P PEHY C+VDLLGRA  L  A E IE M 
Sbjct: 722 VGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMP 781

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           +EPD  +W  LL AC +HKN+E+ E A   +++LEP ++  YVLLSN+Y+ +   D   R
Sbjct: 782 IEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDR 841

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----HD 428
            R MM++R +KK+PG S++E+K  +H F VGDR H    +IY  +D L     E     D
Sbjct: 842 TRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDDLNERAGEIGYVQD 901

Query: 429 GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
                +    E+      +HSEKLA+AFG+++ +    I V+KNLR+C DCH +IK VSK
Sbjct: 902 RYNLLNDVEQEQKDPTAYIHSEKLAVAFGLLSLTNTMPIRVIKNLRVCNDCHNWIKFVSK 961

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           I +R  +VRDA RFHHF+ G CSCKDYW
Sbjct: 962 ISNRAIVVRDAYRFHHFEGGVCSCKDYW 989



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 111/397 (27%), Positives = 193/397 (48%), Gaps = 8/397 (2%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           T   V +N ++  Y     +SE+  +F +M+ +G+  N  T   +L  C   G L LG  
Sbjct: 377 TENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQ 436

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            H   +K G   +  V + L+ MY K G +D  R +  ++ E+ +++W AMI+GY Q+ L
Sbjct: 437 IHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDL 496

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
               L+L++EM++ G+  D + F   +S+CA + A + G ++  Q   +G+  +  + NA
Sbjct: 497 FAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNA 556

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           L+++YARCG  + A   F+ +  K  +SW A+I G+   GH E A+Q+F +M ++G+  +
Sbjct: 557 LVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEAN 616

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA-LEL 307
              F S +SA ++     +G +  + M  K G     E    ++ L  + G + +A  E 
Sbjct: 617 LFTFGSAVSATANTANIKQGKQ-IHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREF 675

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFG--KVIKLEPMNTGYYVLLSNIYSEAR 365
            E  + E +   W A++     H     A   F   K + L P +  +  +LS       
Sbjct: 676 FE--MPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGL 733

Query: 366 NLDGIMRVRMMMRERRLKKDPGY--SYVELKGRVHLF 400
             +G+   R M +E  L   P +    V+L GR  L 
Sbjct: 734 VNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALL 770



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 152/313 (48%), Gaps = 2/313 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + YN+LISG         A+ LF KM+   ++ + VT+  LL  C   G  + G   H  
Sbjct: 280 ISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSY 339

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G+  D  +   L+ +YVKC  ++   + F     + ++ WN M+  Y Q G  +  
Sbjct: 340 VIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSES 399

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
             ++ +M+  G+ P+  T+  +L +C  LGA  +G ++  Q+  +GF  N ++ + LI+M
Sbjct: 400 YWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDM 459

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+ G L  AR I   +  + VVSWTA+I GY  H     A++LF EM   GIR D   F
Sbjct: 460 YAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGF 519

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S +SAC+     ++G +  +      G          +V L  R G+  +A    E + 
Sbjct: 520 SSAISACAGIQALNQG-QQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKID 578

Query: 313 VEPDGAVWGALLG 325
            + D   W AL+ 
Sbjct: 579 AK-DNISWNALIS 590



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 98/280 (35%), Positives = 143/280 (51%), Gaps = 12/280 (4%)

Query: 38  MREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS 97
           M E+G+  N  T L L   C + G L      H    K G D +  +G+ L+ +Y+  G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
           VD   KLFD +P   +  WN +ISG     LA+ VL L+  M +  V PD  TF  VL +
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 158 CAHLGAHSVGLEVEQQIQA----NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
           C+         +V +QI A    +GFGS+P + N LI++Y++ G++  A+ +F+ +  K 
Sbjct: 121 CS---GGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKD 177

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
            VSW A+I G   +G  + A+ LF +M KS + P    F SVLSAC+   L   G E  +
Sbjct: 178 SVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLG-EQLH 236

Query: 274 GMKNKYGLQPGPEHYTC--MVDLLGRAGQLNEALELIESM 311
           G   K+GL    E + C  +V L  R G L  A ++   M
Sbjct: 237 GFIVKWGL--SSETFVCNALVTLYSRWGNLIAAEQIFSKM 274



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 157/319 (49%), Gaps = 2/319 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V + A+ISG   N    EA+ LF +M +  V         +L  C       LG   H 
Sbjct: 178 SVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHG 237

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             VK+GL  +  V N L+T+Y + G++    ++F ++  +  I++N++ISG AQ G +  
Sbjct: 238 FIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDR 297

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L+L+ +M+   + PD VT   +LS+CA +GA   G ++   +   G  S+  +  +L++
Sbjct: 298 ALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLD 357

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +Y +C +++ A   F     + VV W  ++  YG  G+   +  +F +M   G+ P+   
Sbjct: 358 LYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYT 417

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           + S+L  C+  G  D G E  +    K G Q      + ++D+  + G+L+ A  +++  
Sbjct: 418 YPSILRTCTSLGALDLG-EQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQR- 475

Query: 312 LVEPDGAVWGALLGACKIH 330
           L E D   W A++     H
Sbjct: 476 LREEDVVSWTAMIAGYTQH 494



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 120/461 (26%), Positives = 208/461 (45%), Gaps = 57/461 (12%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD- 59
           +FD+ I S++++  +N +ISG +   L S+ + LF  M  + V  +  T   +L  C   
Sbjct: 67  LFDD-IPSSNVSF-WNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGG 124

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
                +    H   +  G      V N L+ +Y K G VD  + +F+++  K  ++W AM
Sbjct: 125 KAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAM 184

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           ISG +QNG     + L+ +M    V P    F  VLS+C  +    +G ++   I   G 
Sbjct: 185 ISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGL 244

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            S  F+ NAL+ +Y+R GNL  A  IF  M R+  +S+ ++I G    G  + A+QLF++
Sbjct: 245 SSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEK 304

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMK---------------------- 276
           M    ++PD     S+LSAC+  G   KG + + Y +K                      
Sbjct: 305 MQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFD 364

Query: 277 ----NKYGLQPGPEH---YTCMVDLLGRAGQLNEALELIESMLVE---PDGAVWGALLGA 326
               ++Y L    E+   +  M+   G+ G L+E+  +   M +E   P+   + ++L  
Sbjct: 365 IETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRT 424

Query: 327 CKIHKNVELAELAFGKVIKLEPMNTGYYV--LLSNIYSEARNLD---GIMRVRMMMRERR 381
           C     ++L E    +VIK        YV  +L ++Y++   LD   GI+        +R
Sbjct: 425 CTSLGALDLGEQIHTQVIK-SGFQFNVYVCSVLIDMYAKHGELDTARGIL--------QR 475

Query: 382 LKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLEN 422
           L+++   S+  +       + G   H    E  ++  ++EN
Sbjct: 476 LREEDVVSWTAM-------IAGYTQHDLFAEALKLFQEMEN 509



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 92/215 (42%), Gaps = 1/215 (0%)

Query: 139 MKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGN 198
           M+  G+  +  T++ +   C + G+     ++  +I  +GF     L + LI++Y   G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 199 LKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSA 258
           +  A  +FD +P   V  W  +I G          + LF  M+   + PD + F SVL A
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 259 CSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGA 318
           CS      +  E  +     +G    P     ++DL  + G ++ A  + E + ++ D  
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLK-DSV 179

Query: 319 VWGALLGACKIHKNVELAELAFGKVIKLEPMNTGY 353
            W A++     +   + A L F ++ K   + T Y
Sbjct: 180 SWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPY 214


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/526 (41%), Positives = 321/526 (61%), Gaps = 22/526 (4%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + ++A+I+GY       EA+  F +M   G E NSVT++ LL  C   G L  GM  H  
Sbjct: 361 ITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAY 420

Query: 73  CVKFGL------------DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP--EKGLITWNA 118
            +K  L              D  V N L+ MY KC S    R +F+ +P  E+ ++TW  
Sbjct: 421 SLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTV 480

Query: 119 MISGYAQNGLATHVLELYREM--KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
           MI GYAQ G +   L+L+ EM  K   V P+A T   +L +CAHL +  +G ++   +  
Sbjct: 481 MIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTR 540

Query: 177 NGF--GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
           +     S  F+ N LI+MY++CG++  AR +FD MP++  VSWT+++ GYG+HG G+ A+
Sbjct: 541 HHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEAL 600

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
            +FD+M K+G  PD  +F+ +L ACSH+G+ D+GL+YF  M++ YG+    +HY C++DL
Sbjct: 601 DIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDL 660

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           L R+G+L++A + I+ M +EP  A+W ALL AC++H NVELAE A  K++ ++  N G Y
Sbjct: 661 LARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSY 720

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
            L+SNIY+ AR    + R+R +M++  +KK PG S+V+ K     F VGDR+H  + EIY
Sbjct: 721 TLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIY 780

Query: 415 RMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVM 470
            +L++L   ++       ++      + EE  N    HSEKLA+A+G++ TSPG  I + 
Sbjct: 781 SLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLTEHSEKLALAYGLLTTSPGCPIRIT 840

Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KNLR+CGDCH     +SKIVD + IVRD++RFHHFK+G CSC  YW
Sbjct: 841 KNLRVCGDCHSAFIYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 126/517 (24%), Positives = 225/517 (43%), Gaps = 90/517 (17%)

Query: 1   VFDE-SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM----REQGVEINS--VTMLCL 53
           VFDE + K     + +N++++ +V  S    A+ LF +M     E+     S  ++++ +
Sbjct: 206 VFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNI 265

Query: 54  LPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL 113
           LP C     L      H   ++ G   D  V N L+  Y KCGS+     +F+ +  K +
Sbjct: 266 LPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDV 325

Query: 114 ITWNAMISGYAQNGLATHVLELYREMKS-------------------------------- 141
           ++WNAM++GY Q+G      EL++ M+                                 
Sbjct: 326 VSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQ 385

Query: 142 ---LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ------------QIQANGFGSNPFLN 186
               G  P++VT + +LS+CA LGA S G+E                   +G G +  ++
Sbjct: 386 MILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVH 445

Query: 187 NALINMYARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS- 243
           NALI+MY++C + K AR IF+ +PR  + VV+WT +IGGY  +G    A++LF EM+   
Sbjct: 446 NALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKP 505

Query: 244 -GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYT-CMVDLLGRAGQL 301
             + P+      +L AC+H      G +    +   +  +        C++D+  + G +
Sbjct: 506 YAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDV 565

Query: 302 NEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLL-- 357
           + A  + +SM  + +   W +++    +H   + A   F K+ K    P +  + VLL  
Sbjct: 566 DTARNVFDSM-PKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYA 624

Query: 358 ---SNIYSEARNLDGIMR---------------VRMMMRERRLKKDPGYSYV-----ELK 394
              S +  +  +   IMR               + ++ R  RL  D  +  +     E  
Sbjct: 625 CSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRL--DKAWKTIQEMPMEPS 682

Query: 395 GRVHLFMVGDRNHHQTVEIYR-MLDKLENLVQEHDGT 430
             + + ++     H  VE+    L+KL ++  E+DG+
Sbjct: 683 AAIWVALLSACRVHSNVELAEYALNKLVSMKAENDGS 719



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 144/304 (47%), Gaps = 10/304 (3%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +N L+  ++    +  A+ +  +M   G + +  T+   L  C +      G   H 
Sbjct: 114 AVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYRSGSAFHG 173

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL---ITWNAMISGYAQNGL 128
           +    G + +  V N L+ MY + GS++    +FD++  KG+   I+WN++++ + +   
Sbjct: 174 LICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSN 233

Query: 129 ATHVLELYREM------KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN 182
               L+L+ EM      K+     D ++ V +L +CA L A     E+      NG  ++
Sbjct: 234 PRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFAD 293

Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
            F+ NALI+ YA+CG++K A  +F+ M  K VVSW A++ GY   G    A +LF  M K
Sbjct: 294 AFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRK 353

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
             I  D   + +V++  +  G   + L+ F  M   YG +P       ++      G L+
Sbjct: 354 ENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMI-LYGSEPNSVTIISLLSACASLGALS 412

Query: 303 EALE 306
           + +E
Sbjct: 413 QGME 416



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 116/255 (45%), Gaps = 19/255 (7%)

Query: 83  SVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL 142
           S+G  ++  Y+ CG+      + ++V     + WN ++  + + G     + +   M   
Sbjct: 84  SLGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRA 143

Query: 143 GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202
           G  PD  T    L +C  L ++  G      I  NGF SN F+ NAL+ MY+R G+L+ A
Sbjct: 144 GTKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDA 203

Query: 203 RAIFDGMPRK---TVVSWTAIIGGYGIHGHGEVAVQLFDEMLK------SGIRPDGTAFV 253
             +FD + RK    V+SW +I+  +    +   A+ LF EM        +  R D  + V
Sbjct: 204 SLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIV 263

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPG--PEHYTC--MVDLLGRAGQLNEALELIE 309
           ++L AC+      +  E      + Y ++ G   + + C  ++D   + G + +A+ +  
Sbjct: 264 NILPACASLKALPQTKEI-----HSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFN 318

Query: 310 SMLVEPDGAVWGALL 324
            M  + D   W A++
Sbjct: 319 VMEFK-DVVSWNAMV 332



 Score = 39.3 bits (90), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 81/202 (40%), Gaps = 11/202 (5%)

Query: 130 THVLELYREMKSLGVCPD---AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
           TH   L +E +S+         +   G+LS  A L + S+       + ++ + S   L 
Sbjct: 32  THFASLLKECRSVNTVRQIHQKIIAYGLLSYPASLLSVSL-----PPLPSHSYVSPKSLG 86

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
             ++  Y  CG    A ++ + +     V W  ++  +   G  + A+ +   ML++G +
Sbjct: 87  TGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTK 146

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           PD       L AC        G   F+G+    G +        +V +  R+G L +A  
Sbjct: 147 PDHFTLPYALKACGELPSYRSG-SAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASL 205

Query: 307 LIESMLVE--PDGAVWGALLGA 326
           + + +  +   D   W +++ A
Sbjct: 206 VFDEITRKGIDDVISWNSIVAA 227


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/520 (40%), Positives = 313/520 (60%), Gaps = 6/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD  +   H  + +  +I  Y  +    EA  L  +M ++G + N++T + +L  C   
Sbjct: 186 IFDNLM--NHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASE 243

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L      H   +  GL+LD  VG  L+ MY K GS+D  R +FD++  + +++WN MI
Sbjct: 244 GALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMI 303

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
             +A++G      +L+ +M++ G  PDA+ F+ +L++CA  GA     ++ +    +G  
Sbjct: 304 GAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLE 363

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            +  +  AL++MY++ G++  AR +FD M  + VVSW A+I G   HG G+ A+++F  M
Sbjct: 364 VDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRM 423

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
              G++PD   FV+VLSACSHAGL D+G   +  M   YG++P   H  CMVDLLGRAG+
Sbjct: 424 TAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGR 483

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L EA   I++M V+PD A WGALLG+C+ + NVEL EL   + +KL+P N   YVLLSNI
Sbjct: 484 LMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLDPKNAATYVLLSNI 543

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+EA   D +  VR MMRER ++K+PG S++E+  ++H F+V D +H +  EI    DK+
Sbjct: 544 YAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLVADSSHPECKEINESKDKV 603

Query: 421 ENLVQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
              ++      D       KN ++   D   HSEKLAI +G+++T PG  I V KNLR+C
Sbjct: 604 IEKIKAEGYIPDTRLVLKNKNMKDKELDICSHSEKLAIVYGLMHTPPGNPIRVFKNLRVC 663

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DCH   KL+SK+  R+ IVRDA RFHHFK G CSC DYW
Sbjct: 664 TDCHGATKLISKVEGREIIVRDANRFHHFKDGVCSCGDYW 703



 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 108/334 (32%), Positives = 175/334 (52%), Gaps = 12/334 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD  +K +  +  +NA+I+GYV +    +A+ LF +M  +GV+ N+ T + +L  C   
Sbjct: 85  VFDALVKKSGAS--WNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASL 142

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H      GL+ D  VG  L+ MY KCGS++  R++FD +    +I+W  MI
Sbjct: 143 SALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMI 202

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
             YAQ+G       L  +M+  G  P+A+T+V +L++CA  GA      V +     G  
Sbjct: 203 GAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLE 262

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            +  +  AL+ MYA+ G++  AR +FD M  + VVSW  +IG +  HG G  A  LF +M
Sbjct: 263 LDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQM 322

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY----TCMVDLLG 296
              G +PD   F+S+L+AC+ AG     LE+   + +++ L  G E      T +V +  
Sbjct: 323 QTEGCKPDAIMFLSILNACASAG----ALEWVKKI-HRHALDSGLEVDVRVGTALVHMYS 377

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           ++G +++A  + + M V  +   W A++     H
Sbjct: 378 KSGSIDDARVVFDRMKVR-NVVSWNAMISGLAQH 410



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 163/303 (53%), Gaps = 2/303 (0%)

Query: 28  VSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNC 87
           +SEA+ +     ++G+  +S   + +L  C+    L      H   +K  ++ +  V N 
Sbjct: 9   LSEAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNN 68

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L+ +Y++CG +   R +FD + +K   +WNAMI+GY ++  A   + L+REM   GV P+
Sbjct: 69  LLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPN 128

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
           A T++ +L +CA L A   G EV   I+  G  S+  +  AL+ MY +CG++ +AR IFD
Sbjct: 129 AGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFD 188

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            +    ++SWT +IG Y   G+G+ A +L  +M + G +P+   +VS+L+AC+  G   K
Sbjct: 189 NLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGAL-K 247

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
            ++  +      GL+      T +V +  ++G +++A  + + M V  D   W  ++GA 
Sbjct: 248 WVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVR-DVVSWNVMIGAF 306

Query: 328 KIH 330
             H
Sbjct: 307 AEH 309


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/544 (41%), Positives = 317/544 (58%), Gaps = 41/544 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +NA+ISGY+ + L  +A++LF KMR  GV+++  T   ++  C D G+  LG   H  
Sbjct: 255 IAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAY 314

Query: 73  CVKFGL--DLDF--SVGNCLMTMYVKCGSVDYGRKLF----------------------- 105
            +K  L  D DF  SVGN L+T+Y K G VD  RK+F                       
Sbjct: 315 ILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGR 374

Query: 106 --------DQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
                    Q+PEK L+TW  MISG AQNG     L+L+ +MK  G  P+   F G +++
Sbjct: 375 MEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITA 434

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
           C+ LGA   G ++  QI   G  S   + NA+I MYARCG ++ AR +F  MP    VSW
Sbjct: 435 CSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSW 494

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
            ++I   G HGHG  A++L+++MLK GI PD   F++VLSACSHAGL ++G  YF  M  
Sbjct: 495 NSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLE 554

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
            YG+ PG +HY  M+DL  RAG+ ++A  +I+SM  E    +W ALL  C+ H N++L  
Sbjct: 555 NYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGI 614

Query: 338 LAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRV 397
            A  K+ KL P + G YVLLSN+Y+     + + R R +MR+R +KK+P  S+ E++ +V
Sbjct: 615 EAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVENKV 674

Query: 398 HLFMVGDRNHHQTVEIYRMLDKLENLVQEHDG----TKRSDQKNSEEHLN-DTEVHSEKL 452
           H+F+V D  H + + IY  L+KL NL  +  G    TK        EH       HSEKL
Sbjct: 675 HVFLVDDTVHPEVLSIYNYLEKL-NLEMKKIGYIPDTKYVLHDMESEHKEYALSTHSEKL 733

Query: 453 AIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSC 512
           A+AFG++    G  + V KNLRICGDCH  IK +SK+V R+ +VRD  RFHHFK+G CSC
Sbjct: 734 AVAFGLMKLPQGATVRVFKNLRICGDCHNAIKFMSKVVGREIVVRDGKRFHHFKNGECSC 793

Query: 513 KDYW 516
           ++YW
Sbjct: 794 RNYW 797



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 138/548 (25%), Positives = 218/548 (39%), Gaps = 136/548 (24%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +F+E+      TV YNA+I+GY   +    A+ LF  MR    + +  T   +L      
Sbjct: 101 IFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLI 160

Query: 61  GYLWLGMC--CHCICVKFGLDLDFSVGNCLMTMYVKCGS---------VDYGRKLFDQVP 109
            Y     C   H   VKFG+++  +V N L+++YVKC S         +   RKLFD++P
Sbjct: 161 FYD-ERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMP 219

Query: 110 -------------------------------EKGLITWNAMISGYAQNGLATHVLELYRE 138
                                          E+  I WNAMISGY  +GL    L L+R+
Sbjct: 220 KRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRK 279

Query: 139 MKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN---------------- 182
           M+ LGV  D  T+  V+S+CA  G   +G +V   I  N    +                
Sbjct: 280 MRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYW 339

Query: 183 ---------------PFLN----NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGG 223
                          P  +    N L++ Y   G +++A++ F  MP K +++WT +I G
Sbjct: 340 KYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISG 399

Query: 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEY------------ 271
              +G GE A++LF++M   G  P+  AF   ++ACS  G  + G +             
Sbjct: 400 LAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDST 459

Query: 272 ----------------FYGMKNKYGLQP--GPEHYTCMVDLLGRAGQLNEALELIESMLV 313
                               +  +   P   P  +  M+  LG+ G   +A+EL E ML 
Sbjct: 460 LSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLK 519

Query: 314 E---PDGAVWGALLGACKIHKNVELAELAFGKVIK---LEPMNTGYYVLL-----SNIYS 362
           E   PD   +  +L AC     VE     F  +++   + P    Y  ++     +  +S
Sbjct: 520 EGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFS 579

Query: 363 EARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLEN 422
           +A+N+     +  M  E R    P +  +         + G R H          +KL  
Sbjct: 580 DAKNV-----IDSMPFEARA---PIWEAL---------LAGCRTHGNMDLGIEAAEKLFK 622

Query: 423 LVQEHDGT 430
           L+ +HDGT
Sbjct: 623 LIPQHDGT 630



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 139/358 (38%), Gaps = 82/358 (22%)

Query: 65  LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT--------- 115
           L    H   +  G  L   + N L+ +Y K     Y RKLFD++P+  +I          
Sbjct: 31  LARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTLITAYS 90

Query: 116 ------------------------WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTF 151
                                   +NAMI+GY+        +EL+R M+     PD  TF
Sbjct: 91  ALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTF 150

Query: 152 VGVLSS----------CAHLGAHSVGLEVE------------------------------ 171
             VLS+          C  +    V   +E                              
Sbjct: 151 ASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMAS 210

Query: 172 -QQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHG 230
            +++       N F+   LI  Y R G+L  AR I D M  +  ++W A+I GY  HG  
Sbjct: 211 ARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLF 270

Query: 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHY- 288
           E A+ LF +M   G++ D + + SV+SAC+  G    G + + Y +KN+  L P  +   
Sbjct: 271 EDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNE--LNPDRDFLL 328

Query: 289 ---TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
                ++ L  + G+++ A ++   M V+ D   W  LL        +E A+  F ++
Sbjct: 329 SVGNTLITLYWKYGKVDGARKIFYEMPVK-DIITWNTLLSGYVNAGRMEEAKSFFAQM 385


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/551 (39%), Positives = 319/551 (57%), Gaps = 37/551 (6%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD   K+  +T  +N +IS Y       E+  LF  M ++ V   +VT++ +L  C   
Sbjct: 175 VFDVCPKADVIT--WNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKL 232

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS----------------------- 97
             L  G   H       ++ +  + N ++ MY  CG                        
Sbjct: 233 KDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIV 292

Query: 98  --------VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
                   +D  R  FD++PEK  ++W AMI GY ++      LEL+R M++  V PD  
Sbjct: 293 SGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEF 352

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
           T V VL++CAHLGA  +G  +   I  N   ++ F+ NALI+MY +CG++ KA +IF  M
Sbjct: 353 TMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREM 412

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
            ++   +WTA+I G  ++GHGE A+ +F  MLK+ I PD   ++ VLSAC+H GL DKG 
Sbjct: 413 SQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGR 472

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
           +YF  M +++G++P   HY C+VDLL RAG+L EA E+IE+M ++ +  VWGALL  C++
Sbjct: 473 KYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRV 532

Query: 330 HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYS 389
           ++  ++AE+   ++++LEP N   YVLL NIY+  +  + +  +R MM ++ +KK PG S
Sbjct: 533 YRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCS 592

Query: 390 YVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ----EHDGTKRSDQKNSEEHLNDT 445
            +E+ GRVH F+ GDR+H QT  I   LDK+   ++      D ++       E+  N  
Sbjct: 593 LIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSV 652

Query: 446 EVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHF 505
             HSEKLAIAFG+IN+ PG  I + KNLR+C DCH   KLVSK+ +R+ IVRD TRFHHF
Sbjct: 653 FRHSEKLAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHF 712

Query: 506 KSGFCSCKDYW 516
           K G CSCKDYW
Sbjct: 713 KHGLCSCKDYW 723



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 109/376 (28%), Positives = 170/376 (45%), Gaps = 35/376 (9%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE I   +L + +N +I GY         VSL+ +M  +GV+ +  T   L       
Sbjct: 74  LFDE-IPEPNLFI-WNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRD 131

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H   +K GL  +  V   L+ MY+ CG +D  R +FD  P+  +ITWN +I
Sbjct: 132 IALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMII 191

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           S Y + G       L+  M+   V P  VT V VLS+C+ L     G +V   ++     
Sbjct: 192 SAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVE 251

Query: 181 SNPFLNNALINMYARCGNLKK-------------------------------ARAIFDGM 209
           SN  L NA+I+MYA CG +                                 AR  FD M
Sbjct: 252 SNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKM 311

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
           P K  VSWTA+I GY      + A++LF  M  + ++PD    VSVL+AC+H G  + G 
Sbjct: 312 PEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELG- 370

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
           E+     ++  ++        ++D+  + G +++A  +   M  + D   W A++    +
Sbjct: 371 EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREM-SQRDKFTWTAMIVGLAV 429

Query: 330 HKNVELAELAFGKVIK 345
           + + E A   F  ++K
Sbjct: 430 NGHGEKALDMFSNMLK 445



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 137/305 (44%), Gaps = 11/305 (3%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYV--KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
           HC  +K GL+ +  + N +MT     + G   Y R+LFD++PE  L  WN MI GY++  
Sbjct: 38  HCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLD 97

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
                + LY EM   GV PD  TF  +        A   G ++   +  +G   N F++ 
Sbjct: 98  FPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHT 157

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           AL+ MY  CG L  AR +FD  P+  V++W  II  Y   G  E + +LF  M    + P
Sbjct: 158 ALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLP 217

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
                V VLSACS       G +    +KN   ++        M+D+    G+++ AL +
Sbjct: 218 TTVTLVLVLSACSKLKDLRTGKKVHSYVKN-CKVESNLVLENAMIDMYADCGEMDSALGI 276

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV-----IKLEPMNTGYYVLLSNIYS 362
             SM    D   W  ++        +++A   F K+     +    M  GY  + SN + 
Sbjct: 277 FRSM-NNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGY--IRSNRFK 333

Query: 363 EARNL 367
           EA  L
Sbjct: 334 EALEL 338


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/526 (41%), Positives = 318/526 (60%), Gaps = 13/526 (2%)

Query: 2   FDESIK-----STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPI 56
           FD+++K          V + A+I+GY+ +    EA+  F K+ E G++ +S +++ +L  
Sbjct: 165 FDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAA 224

Query: 57  CVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
           C   G    G          G+  +  V   L+ MYVKCG+++    +F  +PEK +++W
Sbjct: 225 CARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSW 284

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
           + MI GYA NGL    L+L+ +M+S  + PD  T VGVLS+CA LGA  +G+     +  
Sbjct: 285 STMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDR 344

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
           N F SNP L  ALI+MY++CG++ +A  IF  M RK  V W A++ G  ++GH +    L
Sbjct: 345 NEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSL 404

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           F  + K GIRPD   F+ +L  C+H G  ++G ++F  MK  + L P  EHY CMVDLLG
Sbjct: 405 FSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLG 464

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356
           RAG LNEA +LI +M ++P+  VWGALLG CK+HK+  LAE    K+I+LEP N+G YV 
Sbjct: 465 RAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQ 524

Query: 357 LSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRM 416
           LSNIYS     +   ++R  M+E++++K    S++E+ G VH F+VGD++H  + +IY  
Sbjct: 525 LSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAK 584

Query: 417 LDKLENLVQEHDGTKRSD------QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVM 470
           LD+L   ++       ++      ++  +EH      HSEKLA+AFG+I + P   I V+
Sbjct: 585 LDELGRELKAVGHVPTTEFVLFDIEEEEKEHF--LGYHSEKLAVAFGLIASPPNHVIRVV 642

Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KNLR+CGDCH  IKL+SKI  R+ I+RD  RFH F  G CSC+DYW
Sbjct: 643 KNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 102/310 (32%), Positives = 174/310 (56%), Gaps = 2/310 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N +I G V      +A+ L+G MR  G   N+ T+  +L  C     + LG+  H + V
Sbjct: 82  WNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLV 141

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K G D D  V   L+++YVKC + D   K+FD +P+K +++W A+I+GY  +G     + 
Sbjct: 142 KAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIG 201

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
            ++++  +G+ PD+ + V VL++CA LG  + G  +++ I  +G G N F+  +L++MY 
Sbjct: 202 AFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYV 261

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CGNL++A  IF  MP K +VSW+ +I GY  +G  + A+ LF +M    ++PD    V 
Sbjct: 262 KCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVG 321

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VLSAC+  G  D G+ +   + ++      P   T ++D+  + G + +A E+  +M   
Sbjct: 322 VLSACATLGALDLGI-WASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAM-KR 379

Query: 315 PDGAVWGALL 324
            D  VW A++
Sbjct: 380 KDRVVWNAMM 389



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 125/255 (49%), Gaps = 2/255 (0%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   ++  LD D  + N ++   +  GS +Y + +F QV E  +  WN MI G       
Sbjct: 36  HARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCF 95

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              + LY  M+  G  P+  T   VL +CA      +GL++   +   G+  + F+  +L
Sbjct: 96  DDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSL 155

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           +++Y +C N   A  +FD +P K VVSWTAII GY   GH   A+  F ++L+ G++PD 
Sbjct: 156 LSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDS 215

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
            + V VL+AC+  G    G E+     +  G+       T ++D+  + G L  A  LI 
Sbjct: 216 FSLVKVLAACARLGDCTSG-EWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERA-NLIF 273

Query: 310 SMLVEPDGAVWGALL 324
           S + E D   W  ++
Sbjct: 274 SAMPEKDIVSWSTMI 288


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 211/513 (41%), Positives = 327/513 (63%), Gaps = 11/513 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +N++I+ Y  N     A   F KM+  G+E + +T++ L  I             H 
Sbjct: 339 VVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHG 398

Query: 72  ICVKFGLDLD-FSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
             ++ G  ++   +GN +M MY K G +D   K+F+ +P K +++WN +ISGY QNGLA+
Sbjct: 399 FIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLAS 458

Query: 131 HVLELYREMKS-LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
             +E+YR M+    +  +  T+V +L++ AH+GA   G+ +   +       + F+   L
Sbjct: 459 EAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCL 518

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           I++Y +CG L  A  +F  +PR++ V W AII  +GIHGHGE A++LF EM   G++PD 
Sbjct: 519 IDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDH 578

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
             F+S+LSACSH+GL D+G ++F+ +  +YG++P  +HY CMVDLLGRAG L  A + I+
Sbjct: 579 VTFISLLSACSHSGLVDEG-KWFFHLMQEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIK 637

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDG 369
            M + PD ++WGALLGAC+IH N+EL + A  ++ +++  N GYYVLLSNIY+     +G
Sbjct: 638 DMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEG 697

Query: 370 IMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY---RMLD-KLENL-- 423
           + +VR + RER LKK PG+S +E+  RV +F  G+++H +  EIY   R+L  K+++L  
Sbjct: 698 VDKVRSLARERGLKKTPGWSSIEVNRRVDIFYTGNQSHPKCKEIYAELRILTAKMKSLGY 757

Query: 424 VQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFI 483
           + ++    +  +++ +EH+  +  HSE+LAIAFGII+T P + I + KNLR+CGDCH   
Sbjct: 758 IPDYSFVLQDVEEDEKEHILTS--HSERLAIAFGIISTPPKSAIRIFKNLRVCGDCHNAT 815

Query: 484 KLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K +S+I +R+ +VRD+ RFHHFK+G CSC DYW
Sbjct: 816 KFISRITEREIVVRDSKRFHHFKNGICSCGDYW 848



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 85/248 (34%), Positives = 121/248 (48%), Gaps = 2/248 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N++IS YV N    EA+  F ++    V           P+      L  G   HC   
Sbjct: 142 WNSMISAYVRNGHFREAIDCFYQLLL--VTKFQADFYTFPPVLKACQTLVDGRKIHCWVF 199

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K G   D  V   L+ MY + G V   R LFD +P + + +WNAMISG  QNG A   L+
Sbjct: 200 KLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALD 259

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           +  EM+  G+  D+VT   +L  CA LG  S    +   +  +G     F++NALINMYA
Sbjct: 260 VLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYA 319

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           + GNL  A+ +F  M  + VVSW +II  Y  +     A   F +M  +G+ PD    VS
Sbjct: 320 KFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVS 379

Query: 255 VLSACSHA 262
           + S  + +
Sbjct: 380 LASIAAQS 387



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 142/283 (50%), Gaps = 11/283 (3%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE-LYREMKSLGVCP 146
           L+ +Y   G V   R  FDQ+  K + TWN+MIS Y +NG     ++  Y+ +       
Sbjct: 114 LVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQA 173

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF 206
           D  TF  VL +C  L     G ++   +   GF  + F+  +LI+MY+R G +  AR++F
Sbjct: 174 DFYTFPPVLKACQTLVD---GRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLF 230

Query: 207 DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG-LT 265
           D MP + + SW A+I G   +G+   A+ + DEM   GI  D     S+L  C+  G ++
Sbjct: 231 DDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDIS 290

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
              L + Y +  K+GL+        ++++  + G L +A ++ + M +  D   W +++ 
Sbjct: 291 TATLIHLYVI--KHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLR-DVVSWNSIIA 347

Query: 326 ACKIHKNVELAELAFGKVI--KLEPMNTGYYVLLSNIYSEARN 366
           A + + +   A   F K+    LEP +    V L++I +++R+
Sbjct: 348 AYEQNDDPVTARGFFFKMQLNGLEP-DLLTLVSLASIAAQSRD 389



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 42/247 (17%)

Query: 168 LEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH 227
           L V  +IQ+N      F++  L+N+YA  G++  +R  FD + RK V +W ++I  Y  +
Sbjct: 99  LVVSGKIQSN------FISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRN 152

Query: 228 GHGEVAVQLFDE-MLKSGIRPDGTAFVSVLSACS--------HAGLTDKGLEY------- 271
           GH   A+  F + +L +  + D   F  VL AC         H  +   G ++       
Sbjct: 153 GHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVDGRKIHCWVFKLGFQWDVFVAAS 212

Query: 272 FYGMKNKYGL----------QPGPE--HYTCMVDLLGRAGQLNEALELIESMLVEP---D 316
              M +++G            P  +   +  M+  L + G   +AL++++ M +E    D
Sbjct: 213 LIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMD 272

Query: 317 GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV--LLSNIYSEARNLDGIMRV- 373
                ++L  C    ++  A L    VIK   +    +V   L N+Y++  NL    +V 
Sbjct: 273 SVTVASILPVCAQLGDISTATLIHLYVIK-HGLEFELFVSNALINMYAKFGNLGDAQKVF 331

Query: 374 -RMMMRE 379
            +M +R+
Sbjct: 332 QQMFLRD 338


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/551 (39%), Positives = 319/551 (57%), Gaps = 37/551 (6%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD   K+  +T  +N +IS Y       E+  LF  M ++ V   +VT++ +L  C   
Sbjct: 196 VFDVCPKADVIT--WNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKL 253

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS----------------------- 97
             L  G   H       ++ +  + N ++ MY  CG                        
Sbjct: 254 KDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIV 313

Query: 98  --------VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
                   +D  R  FD++PEK  ++W AMI GY ++      LEL+R M++  V PD  
Sbjct: 314 SGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEF 373

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
           T V VL++CAHLGA  +G  +   I  N   ++ F+ NALI+MY +CG++ KA +IF  M
Sbjct: 374 TMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREM 433

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
            ++   +WTA+I G  ++GHGE A+ +F  MLK+ I PD   ++ VLSAC+H GL DKG 
Sbjct: 434 SQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGR 493

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
           +YF  M +++G++P   HY C+VDLL RAG+L EA E+IE+M ++ +  VWGALL  C++
Sbjct: 494 KYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRV 553

Query: 330 HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYS 389
           ++  ++AE+   ++++LEP N   YVLL NIY+  +  + +  +R MM ++ +KK PG S
Sbjct: 554 YRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCS 613

Query: 390 YVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ----EHDGTKRSDQKNSEEHLNDT 445
            +E+ GRVH F+ GDR+H QT  I   LDK+   ++      D ++       E+  N  
Sbjct: 614 LIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSV 673

Query: 446 EVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHF 505
             HSEKLAIAFG+IN+ PG  I + KNLR+C DCH   KLVSK+ +R+ IVRD TRFHHF
Sbjct: 674 FRHSEKLAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHF 733

Query: 506 KSGFCSCKDYW 516
           K G CSCKDYW
Sbjct: 734 KHGLCSCKDYW 744



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/376 (28%), Positives = 170/376 (45%), Gaps = 35/376 (9%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE I   +L + +N +I GY         VSL+ +M  +GV+ +  T   L       
Sbjct: 95  LFDE-IPEPNLFI-WNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRD 152

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H   +K GL  +  V   L+ MY+ CG +D  R +FD  P+  +ITWN +I
Sbjct: 153 IALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMII 212

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           S Y + G       L+  M+   V P  VT V VLS+C+ L     G +V   ++     
Sbjct: 213 SAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVE 272

Query: 181 SNPFLNNALINMYARCGNLKK-------------------------------ARAIFDGM 209
           SN  L NA+I+MYA CG +                                 AR  FD M
Sbjct: 273 SNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKM 332

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
           P K  VSWTA+I GY      + A++LF  M  + ++PD    VSVL+AC+H G  + G 
Sbjct: 333 PEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELG- 391

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
           E+     ++  ++        ++D+  + G +++A  +   M  + D   W A++    +
Sbjct: 392 EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREM-SQRDKFTWTAMIVGLAV 450

Query: 330 HKNVELAELAFGKVIK 345
           + + E A   F  ++K
Sbjct: 451 NGHGEKALDMFSNMLK 466



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 137/305 (44%), Gaps = 11/305 (3%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYV--KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
           HC  +K GL+ +  + N +MT     + G   Y R+LFD++PE  L  WN MI GY++  
Sbjct: 59  HCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLD 118

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
                + LY EM   GV PD  TF  +        A   G ++   +  +G   N F++ 
Sbjct: 119 FPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHT 178

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           AL+ MY  CG L  AR +FD  P+  V++W  II  Y   G  E + +LF  M    + P
Sbjct: 179 ALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLP 238

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
                V VLSACS       G +    +KN   ++        M+D+    G+++ AL +
Sbjct: 239 TTVTLVLVLSACSKLKDLRTGKKVHSYVKN-CKVESNLVLENAMIDMYADCGEMDSALGI 297

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV-----IKLEPMNTGYYVLLSNIYS 362
             SM    D   W  ++        +++A   F K+     +    M  GY  + SN + 
Sbjct: 298 FRSM-NNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGY--IRSNRFK 354

Query: 363 EARNL 367
           EA  L
Sbjct: 355 EALEL 359


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/511 (42%), Positives = 308/511 (60%), Gaps = 11/511 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N ++SG+V N     A  +FG MR  G   +  T+L LL  C D   L +G   H   V
Sbjct: 193 WNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVV 252

Query: 75  KFGLDLDFSVG---NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + G       G   N ++ MY  C SV   RKLF+ +  K +++WN++ISGY + G A  
Sbjct: 253 RNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQ 312

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            LEL+  M  +G  PD VT + VL++C  + A  +G  V+  +   G+  N  +  ALI 
Sbjct: 313 ALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIG 372

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA CG+L  A  +FD MP K + + T ++ G+GIHG G  A+ +F EML  G+ PD   
Sbjct: 373 MYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGI 432

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F +VLSACSH+GL D+G E FY M   Y ++P P HY+C+VDLLGRAG L+EA  +IE+M
Sbjct: 433 FTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENM 492

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            ++P+  VW ALL AC++H+NV+LA ++  K+ +L P     YV LSNIY+  R  + + 
Sbjct: 493 KLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVE 552

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
            VR ++ +RRL+K P YS+VEL   VH F VGD +H Q+ +IY  L  L    Q      
Sbjct: 553 NVRALVAKRRLRKPPSYSFVELNKMVHQFFVGDTSHEQSDDIYAKLKDLNE--QLKKAGY 610

Query: 432 RSDQK----NSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
           + D      + EE + +  +  HSE+LA+AF +INT PGT I + KNLR+CGDCH  IK+
Sbjct: 611 KPDTSLVLYDVEEEIKEKMLWDHSERLALAFALINTGPGTTIRITKNLRVCGDCHTVIKM 670

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +SK+ +R+ I+RD  RFHHF+ G CSC  YW
Sbjct: 671 ISKLTNREIIMRDICRFHHFRDGLCSCGGYW 701



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 121/397 (30%), Positives = 189/397 (47%), Gaps = 43/397 (10%)

Query: 1   VFDESI-KSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD 59
           +FD+ + K++ L   +N++I GY  N+  S A+ L+ KM   G + ++ T   +L  C D
Sbjct: 80  IFDQIVLKNSFL---WNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGD 136

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
                +G   H + V  GL+ D  VGN +++MY K G V+  R +FD++  + L +WN M
Sbjct: 137 LLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTM 196

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           +SG+ +NG A    E++ +M+  G   D  T + +LS+C  +    VG E+   +  NG 
Sbjct: 197 MSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGE 256

Query: 180 GS---NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
                N FL N++I+MY  C ++  AR +F+G+  K VVSW ++I GY   G    A++L
Sbjct: 257 SGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALEL 316

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEY------------------FYGMKNK 278
           F  M+  G  PD    +SVL+AC+       G                       GM   
Sbjct: 317 FGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYAN 376

Query: 279 YG--------LQPGPEHY----TCMVDLLGRAGQLNEALELIESML---VEPDGAVWGAL 323
            G            PE      T MV   G  G+  EA+ +   ML   V PD  ++ A+
Sbjct: 377 CGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAV 436

Query: 324 LGACKIHKNVELAELAFGKVIK---LEPMNTGYYVLL 357
           L AC     V+  +  F K+ +   +EP  T Y  L+
Sbjct: 437 LSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLV 473



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 135/279 (48%), Gaps = 8/279 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N+LISGY       +A+ LFG+M   G   + VT++ +L  C     L LG      
Sbjct: 295 VSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSY 354

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK G  ++  VG  L+ MY  CGS+    ++FD++PEK L     M++G+  +G     
Sbjct: 355 VVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREA 414

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN-GFGSNPFLNNALIN 191
           + ++ EM   GV PD   F  VLS+C+H G    G E+  ++  +      P   + L++
Sbjct: 415 ISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVD 474

Query: 192 MYARCGNLKKARAIFDGM---PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           +  R G L +A A+ + M   P + V  WTA++    +H + ++AV    ++ +  + PD
Sbjct: 475 LLGRAGYLDEAYAVIENMKLKPNEDV--WTALLSACRLHRNVKLAVISAQKLFE--LNPD 530

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH 287
           G +    LS    A    + +E    +  K  L+  P +
Sbjct: 531 GVSGYVCLSNIYAAERRWEDVENVRALVAKRRLRKPPSY 569



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 92/172 (53%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L   Y  CG + Y + +FDQ+  K    WN+MI GYA N   +  L LY +M   G  PD
Sbjct: 64  LAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPD 123

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
             T+  VL +C  L    +G +V   +   G   + ++ N++++MY + G+++ AR +FD
Sbjct: 124 NFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFD 183

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC 259
            M  + + SW  ++ G+  +G    A ++F +M + G   D T  +++LSAC
Sbjct: 184 RMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSAC 235



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 3/172 (1%)

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANG-FGSNPFLNNALINMYARCGNLKKARAIFDGMPRK 212
           +L S  +  + +  L++   +   G    N +L   L   YA CG++  A+ IFD +  K
Sbjct: 28  LLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLK 87

Query: 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF 272
               W ++I GY  +     A+ L+ +ML  G +PD   +  VL AC    L + G +  
Sbjct: 88  NSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRK-V 146

Query: 273 YGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
           + +    GL+        ++ +  + G +  A  + + MLV  D   W  ++
Sbjct: 147 HALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVR-DLTSWNTMM 197


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/507 (43%), Positives = 309/507 (60%), Gaps = 4/507 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +I G   N    EA + F KM ++G     VTM+ +L  C + G L  G   H +
Sbjct: 313 VSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKL 372

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K  LD + SV N L++MY KC  VD    +F+ + EK  +TWNAMI GYAQNG     
Sbjct: 373 LDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNL-EKTNVTWNAMILGYAQNGCVKEA 431

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+  M+S G+  D  T VGV+++ A    +     +          +N F++ AL++M
Sbjct: 432 LNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDM 491

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG +K AR +FD M  + V++W A+I GYG HG G+  + LF+EM K  ++P+   F
Sbjct: 492 YAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITF 551

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +SV+SACSH+G  ++GL  F  M+  Y L+P  +HY+ MVDLLGRAGQL++A   I+ M 
Sbjct: 552 LSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMP 611

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           ++P  +V GA+LGACKIHKNVEL E A  K+ KL+P   GY+VLL+NIY+     D + +
Sbjct: 612 IKPGISVLGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAK 671

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR  M ++ L K PG S+VEL+  +H F  G  NH ++ +IY  L+ L + ++       
Sbjct: 672 VRTAMEDKGLHKTPGCSWVELRNEIHTFYSGSTNHPESKKIYAFLETLGDEIKAAGYVPD 731

Query: 433 SDQ-KNSEEHLNDT--EVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKI 489
            D   + EE +       HSE+LAIAFG++NTSPGT + + KNLR+CGDCH   K +S +
Sbjct: 732 PDSIHDVEEDVKKQLLSSHSERLAIAFGLLNTSPGTTLHIRKNLRVCGDCHDTTKYISLV 791

Query: 490 VDRQFIVRDATRFHHFKSGFCSCKDYW 516
             R+ IVRD  RFHHFK+G CSC DYW
Sbjct: 792 TGREIIVRDLRRFHHFKNGSCSCGDYW 818



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 161/314 (51%), Gaps = 3/314 (0%)

Query: 11  LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
           L V Y+ ++ GY  NS + +A+  F +M    V +      CLL +C +   L  G   H
Sbjct: 109 LDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIH 168

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
            + +  G + +  V   +M++Y KC  +D   K+F+++  K L++W  +++GYAQNG A 
Sbjct: 169 GLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAK 228

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             L+L  +M+  G  PD+VT V +L + A + A  +G  +      +GF S   + NAL+
Sbjct: 229 RALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALL 288

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MY +CG+ + AR +F GM  KTVVSW  +I G   +G  E A   F +ML  G  P   
Sbjct: 289 DMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRV 348

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
             + VL AC++ G  ++G  + + + +K  L         ++ +  +  +++ A  +  +
Sbjct: 349 TMMGVLLACANLGDLERGW-FVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNN 407

Query: 311 MLVEPDGAVWGALL 324
           +  E     W A++
Sbjct: 408 L--EKTNVTWNAMI 419



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 97/318 (30%), Positives = 162/318 (50%), Gaps = 3/318 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  L++GY  N     A+ L  +M+E G + +SVT++ +LP   D   L +G   H  
Sbjct: 212 VSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGY 271

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             + G +   +V N L+ MY KCGS    R +F  +  K +++WN MI G AQNG +   
Sbjct: 272 AFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEA 331

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
              + +M   G  P  VT +GVL +CA+LG    G  V + +      SN  + N+LI+M
Sbjct: 332 FATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISM 391

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++C  +  A +IF+ +  KT V+W A+I GY  +G  + A+ LF  M   GI+ D    
Sbjct: 392 YSKCKRVDIAASIFNNL-EKTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTL 450

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           V V++A +   + ++  ++ +G+  +  +       T +VD+  + G +  A +L + M+
Sbjct: 451 VGVITALADFSV-NRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFD-MM 508

Query: 313 VEPDGAVWGALLGACKIH 330
            E     W A++     H
Sbjct: 509 QERHVITWNAMIDGYGTH 526



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 120/261 (45%), Gaps = 10/261 (3%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           +++++ K GS     ++F+ V  K  + ++ M+ GYA+N      L  +  M    +C +
Sbjct: 85  VISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRM----MCDE 140

Query: 148 AVTFVG----VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
               VG    +L  C        G E+   I  NGF SN F+  A++++YA+C  +  A 
Sbjct: 141 VRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAY 200

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG 263
            +F+ M  K +VSWT ++ GY  +GH + A+QL  +M ++G +PD    VS+L A +   
Sbjct: 201 KMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMK 260

Query: 264 LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGAL 323
               G    +G   + G +        ++D+  + G    A  L+   +       W  +
Sbjct: 261 ALRIG-RSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIA-RLVFKGMRSKTVVSWNTM 318

Query: 324 LGACKIHKNVELAELAFGKVI 344
           +  C  +   E A   F K++
Sbjct: 319 IDGCAQNGESEEAFATFLKML 339


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/488 (45%), Positives = 297/488 (60%), Gaps = 5/488 (1%)

Query: 34  LFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYV 93
            + +M    V  ++ T   ++  C D   L  G   H   +  G  LD  V   L+ +Y 
Sbjct: 98  FYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVALYG 157

Query: 94  KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVG 153
           KCG +   RK+FD++ E+ ++ WN+MISGY QNG A   + L+  MK  GV PD+ TFV 
Sbjct: 158 KCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVS 217

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
           VLS+CAHLGA S+G  V + I  NG   N  L  +LINMY RCGN+ KAR +FD M  + 
Sbjct: 218 VLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERN 277

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
           VV+WTA+I GYG +G+G  AV+LF EM ++G+ P+   FV+VLSAC+HAGL ++G   F 
Sbjct: 278 VVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSACAHAGLVNEGRRLFA 337

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE-PDGAVWGALLGACKIHKN 332
            ++ +Y L PG EH  C+VD+LGRAG L+EA   I+  + E P  A+  A+LGACK+HKN
Sbjct: 338 SIREEYHLVPGVEHNVCLVDMLGRAGLLDEAYNFIKEEIPENPAPAILTAMLGACKMHKN 397

Query: 333 VELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVE 392
            +L       ++  EP N  +YV+LSNIY+ A  +D +  VR  M  + LKK  GYS VE
Sbjct: 398 FDLGAQVAEHLLAAEPENPAHYVILSNIYALAGRMDQVEIVRNNMIRKCLKKQVGYSTVE 457

Query: 393 LKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQ----KNSEEHLNDTEVH 448
           +  + +LF +GD++H +T  IY  LD+L     E      SD        EE       H
Sbjct: 458 VDQKTYLFSMGDKSHSETNAIYHYLDELMWKCSEAGYVPVSDSVMHELEEEEREYALRYH 517

Query: 449 SEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSG 508
           SEKLAIAFG++ TS GT I ++KNLR+C DCH  IK +S I  R+ IVRD  RFHHFK G
Sbjct: 518 SEKLAIAFGLLKTSHGTPIRIVKNLRMCEDCHSAIKFISAISSREIIVRDKLRFHHFKVG 577

Query: 509 FCSCKDYW 516
            CSC DYW
Sbjct: 578 SCSCLDYW 585



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/261 (34%), Positives = 146/261 (55%), Gaps = 9/261 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+  + +   V +N++ISGY  N    EA+ LF +M+E GVE +S T + +L  C   
Sbjct: 168 VFDKIRERS--IVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHL 225

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G   LG   H   V  GLDL+  +G  L+ MY++CG+V   R++FD + E+ ++ W AMI
Sbjct: 226 GAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMI 285

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGY  NG  +  +EL+ EM+  G+ P+++TFV VLS+CAH G  + G  +   I+   + 
Sbjct: 286 SGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSACAHAGLVNEGRRLFASIREE-YH 344

Query: 181 SNPFL--NNALINMYARCGNLKKA-RAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQL 236
             P +  N  L++M  R G L +A   I + +P     +  TA++G   +H + ++  Q+
Sbjct: 345 LVPGVEHNVCLVDMLGRAGLLDEAYNFIKEEIPENPAPAILTAMLGACKMHKNFDLGAQV 404

Query: 237 FDEMLKSGIRPDGTAFVSVLS 257
            + +L +   P+  A   +LS
Sbjct: 405 AEHLLAA--EPENPAHYVILS 423



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 127/242 (52%), Gaps = 9/242 (3%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQN-GLATHVLELYREMKSLGVCP 146
           L+ +    GS+ Y R++F  VP      + ++I   +++   + + L  Y  M    V P
Sbjct: 50  LLNLACAAGSISYTRQIFLAVPNPDSFLFTSLIKSTSKSHNFSIYSLYFYSRMVLSNVSP 109

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF 206
              TF  V+ SCA L A   G  V   +  +GFG + ++  AL+ +Y +CG+L  AR +F
Sbjct: 110 SNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINARKVF 169

Query: 207 DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD 266
           D +  +++V+W ++I GY  +G  + A+ LFD M ++G+ PD   FVSVLSAC+H G   
Sbjct: 170 DKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFS 229

Query: 267 KGL---EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGAL 323
            G    EY  G     GL       T ++++  R G +++A E+ +SM  E +   W A+
Sbjct: 230 LGCWVHEYIVGN----GLDLNVVLGTSLINMYIRCGNVSKAREVFDSM-KERNVVAWTAM 284

Query: 324 LG 325
           + 
Sbjct: 285 IS 286



 Score = 42.4 bits (98), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 77/195 (39%), Gaps = 38/195 (19%)

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYG-IH 227
           +V   I  +G+G +  L   L+N+    G++   R IF  +P      +T++I      H
Sbjct: 30  QVHAHIIVSGYGRSRSLLTKLLNLACAAGSISYTRQIFLAVPNPDSFLFTSLIKSTSKSH 89

Query: 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH-AGLTDKGLEYFYGMKNKYGLQPGPE 286
                ++  +  M+ S + P    F SV+ +C+  + L    + + + + + +GL    +
Sbjct: 90  NFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVYVQ 149

Query: 287 HYTCMVDLLGRAGQL-------------------------------NEALELIESML--- 312
               +V L G+ G L                                EA+ L + M    
Sbjct: 150 --AALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETG 207

Query: 313 VEPDGAVWGALLGAC 327
           VEPD A + ++L AC
Sbjct: 208 VEPDSATFVSVLSAC 222


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/512 (42%), Positives = 308/512 (60%), Gaps = 8/512 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+I+GYV +    EA++ F +M+E  V  N  TM+ +L  C     L LG      
Sbjct: 225 VSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSW 284

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               G   +  + N L+ MY KCG +   RKLFD + +K +I WN MI GY    L    
Sbjct: 285 VRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEA 344

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGS----NPFLNNA 188
           L L+  M    V P+ VTF+ VL +CA LGA  +G  V   I  N  G+    N  L  +
Sbjct: 345 LVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTS 404

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           +I MYA+CG ++ A  +F  M  +++ SW A+I G  ++GH E A+ LF+EM+  G +PD
Sbjct: 405 IIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPD 464

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
              FV VLSAC+ AG  + G  YF  M   YG+ P  +HY CM+DLL R+G+ +EA  L+
Sbjct: 465 DITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLM 524

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
            +M +EPDGA+WG+LL AC+IH  VE  E    ++ +LEP N+G YVLLSNIY+ A   D
Sbjct: 525 GNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWD 584

Query: 369 GIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE-- 426
            + ++R  + ++ +KK PG + +E+ G VH F+VGD+ H Q+  I+RMLD+++ L++E  
Sbjct: 585 DVAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETG 644

Query: 427 --HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
              D ++     + E        HSEKLAIAFG+I+T PG+ I ++KNLR+C +CH   K
Sbjct: 645 FVPDTSEVLYDMDEEWKEGALTQHSEKLAIAFGLISTKPGSTIRIVKNLRVCRNCHSATK 704

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           L+SKI +R+ I RD  RFHHFK GFCSC D W
Sbjct: 705 LISKIFNREIIARDRNRFHHFKDGFCSCNDRW 736



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/380 (29%), Positives = 174/380 (45%), Gaps = 37/380 (9%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N LI  + L    + ++ LF +M   G+  NS T   L   C            H   +
Sbjct: 95  WNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHAL 154

Query: 75  KFGLDLDFSVGNCLMTMY-------------------------------VKCGSVDYGRK 103
           K  L L   V   L+ MY                               V  G VD  R+
Sbjct: 155 KLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARR 214

Query: 104 LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163
           LFD++P K +++WNAMI+GY Q+G     L  +  M+   V P+  T V VLS+C HL +
Sbjct: 215 LFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRS 274

Query: 164 HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGG 223
             +G  +   ++  GFG N  L NAL++MY++CG +  AR +FDGM  K V+ W  +IGG
Sbjct: 275 LELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGG 334

Query: 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG-LEYFYGMKNKYGLQ 282
           Y      E A+ LF+ ML+  + P+   F++VL AC+  G  D G   + Y  KN  G  
Sbjct: 335 YCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTG 394

Query: 283 --PGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
                  +T ++ +  + G +  A ++  SM      A W A++    ++ + E A   F
Sbjct: 395 NVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSR-SLASWNAMISGLAMNGHAERALGLF 453

Query: 341 GKVIK--LEPMNTGYYVLLS 358
            ++I    +P +  +  +LS
Sbjct: 454 EEMINEGFQPDDITFVGVLS 473



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 123/291 (42%), Gaps = 37/291 (12%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVD--YGRKLFDQVPEK--GLITWNAMISGYAQ 125
           H + +K GL       + L+       S D  Y   LF  +  +   +  WN +I  ++ 
Sbjct: 45  HSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRAHSL 104

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
               T  L L+ +M   G+ P++ TF  +  SCA   A     ++           +P +
Sbjct: 105 TPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHV 164

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE------ 239
           + +LI+MY++ G L+ AR +FD    +  VS+TA+I GY   GH + A +LFDE      
Sbjct: 165 HTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDV 224

Query: 240 -------------------------MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYG 274
                                    M ++ + P+ +  VSVLSAC H    + G ++   
Sbjct: 225 VSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELG-KWIGS 283

Query: 275 MKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
                G     +    +VD+  + G++  A +L + M  + D  +W  ++G
Sbjct: 284 WVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGM-EDKDVILWNTMIG 333


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/509 (42%), Positives = 312/509 (61%), Gaps = 4/509 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V +NA+I GY  N   +EA++LF +M ++GV++   ++L  L  C + GYL      H 
Sbjct: 185 SVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHE 244

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV-PEKGLITWNAMISGYAQNGLAT 130
           + V+ GL  + SV N L+T Y KC   D   ++F+++  +K  I+WNAMI G+ QN    
Sbjct: 245 LLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPE 304

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
               L+  M+   V PD+ T V V+ + A +        +      +    + ++  ALI
Sbjct: 305 DAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALI 364

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MY++CG +  AR +FD    + V++W A+I GYG HG G+ AV+LF+EM  +G  P+ T
Sbjct: 365 DMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNET 424

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            F+SVL+ACSHAGL D+G +YF  MK  YGL+PG EHY  MVDLLGRAG+L+EA   I++
Sbjct: 425 TFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKN 484

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M +EP  +V+GA+LGACK+HKNVELAE +   + +L P    Y+VLL+NIY+ A     +
Sbjct: 485 MPIEPGISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYANASMWKDV 544

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
            RVR  M ++ L+K PG+S ++LK  VH F  G  NH    +IY  L KL   +++    
Sbjct: 545 ARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYARLAKLIEEIKDMGYV 604

Query: 431 KRSDQKNSEEHLNDTEV---HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
             +D  +  E     ++   HSEKLAIA+G+I T+PGT I + KNLR+C DCH   KL+S
Sbjct: 605 PDTDSIHDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCNDCHNATKLIS 664

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +  R+ I+RD  RFHHFK G CSC DYW
Sbjct: 665 LLTGREIIMRDIQRFHHFKDGKCSCGDYW 693



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 153/302 (50%), Gaps = 6/302 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMR--EQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
           V +NA+++GY  N L S A+    +M+  E G   +SVT++ +LP C D   L      H
Sbjct: 83  VAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHACREVH 142

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
              ++ GLD   +V   ++  Y KCG+V+  R +FD +P +  ++WNAMI GYA NG AT
Sbjct: 143 AFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNAT 202

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             + L+  M   GV     + +  L +C  LG       V + +   G  SN  + NALI
Sbjct: 203 EAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALI 262

Query: 191 NMYARCGNLKKARAIFDGM-PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
             YA+C     A  +F+ +  +KT +SW A+I G+  +   E A +LF  M    +RPD 
Sbjct: 263 TTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDS 322

Query: 250 TAFVSVLSACSHAGLTDK-GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
              VSV+ A   A ++D     + +G   ++ L       T ++D+  + G+++ A  L 
Sbjct: 323 FTLVSVIPAV--ADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLF 380

Query: 309 ES 310
           +S
Sbjct: 381 DS 382



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 147/314 (46%), Gaps = 4/314 (1%)

Query: 49  TMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV 108
           T   LL +C     L  G   H      GL  +      L  MY KC      R++FD++
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRM 77

Query: 109 PEKGLITWNAMISGYAQNGLATHVLELYREMKSL--GVCPDAVTFVGVLSSCAHLGAHSV 166
           P +  + WNA+++GYA+NGL +  +E    M+    G  PD+VT V VL +CA   A   
Sbjct: 78  PSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHA 137

Query: 167 GLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGI 226
             EV       G      ++ A+++ Y +CG ++ ARA+FD MP +  VSW A+I GY  
Sbjct: 138 CREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYAD 197

Query: 227 HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPE 286
           +G+   A+ LF  M++ G+     + ++ L AC   G  D+ +   + +  + GL     
Sbjct: 198 NGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDE-VRRVHELLVRVGLSSNVS 256

Query: 287 HYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
               ++    +  + + A ++   +  +     W A++     ++  E AE  F + ++L
Sbjct: 257 VTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFAR-MQL 315

Query: 347 EPMNTGYYVLLSNI 360
           E +    + L+S I
Sbjct: 316 ENVRPDSFTLVSVI 329



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 89/202 (44%), Gaps = 4/202 (1%)

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P   TF  +L  CA     + G  V  Q++A G  S    + AL NMY +C     AR +
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRV 73

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML--KSGIRPDGTAFVSVLSACSHAG 263
           FD MP +  V+W A++ GY  +G    A++    M   + G RPD    VSVL AC+ A 
Sbjct: 74  FDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADAR 133

Query: 264 LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGAL 323
                 E  +    + GL       T ++D   + G +  A  + + M V  +   W A+
Sbjct: 134 ALHACRE-VHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVR-NSVSWNAM 191

Query: 324 LGACKIHKNVELAELAFGKVIK 345
           +     + N   A   F ++++
Sbjct: 192 IDGYADNGNATEAMALFWRMVQ 213


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/508 (41%), Positives = 304/508 (59%), Gaps = 4/508 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N+++SGY  N L  E V LF K+ E  +E + VTM+ +L  C     L +G      
Sbjct: 188 VAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEY 247

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            V  GL  + ++   L+ MY KCG VD  RKLFD++ ++ ++ W+AMISGYAQ       
Sbjct: 248 IVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEA 307

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+ EM+   V P+ VT V VL SCA LGA+  G  V   I+         L   LI+ 
Sbjct: 308 LNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDF 367

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG + ++  +F  M  K V +WTA+I G   +G G++A++ F  ML++ ++P+   F
Sbjct: 368 YAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTF 427

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + VLSACSHA L D+G   F  M+  + ++P  EHY CMVD+LGRAG L EA + I++M 
Sbjct: 428 IGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMP 487

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
             P+  VW  LL +C+ HKN+E+AE +   + +LEP ++G Y+LLSN Y+    ++  +R
Sbjct: 488 FPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIR 547

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR +++E+ +KK PG S +EL G VH F   D  H  + EI+  LDK+   ++       
Sbjct: 548 VRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHSKEIHDALDKMMKQIKRLGYVPN 607

Query: 433 SDQK--NSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
           +D     +EE   +T V  HSEKLAIA+G+I TSP T I + KNLR+C DCH   K +S+
Sbjct: 608 TDDARLEAEEESKETSVSHHSEKLAIAYGLIRTSPRTTIRISKNLRMCRDCHNATKFISQ 667

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           + +R  IVRD  RFHHFK G CSC DYW
Sbjct: 668 VFERMIIVRDRNRFHHFKDGLCSCNDYW 695



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 102/311 (32%), Positives = 163/311 (52%), Gaps = 4/311 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           YN +I G         A+ LF KM E+ V+ +  T   +L  C     L  G   H + +
Sbjct: 89  YNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALIL 148

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K G   +  V N L+ MY  CG +   R +FD +PE+ ++ WN+M+SGY +NGL   V++
Sbjct: 149 KSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVK 208

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+R++  L +  D VT + VL +C  L    +G  + + I + G   N  L  +LI+MYA
Sbjct: 209 LFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYA 268

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG +  AR +FD M ++ VV+W+A+I GY      + A+ LF EM K  + P+    VS
Sbjct: 269 KCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVS 328

Query: 255 VLSACSHAGLTDKG-LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           VL +C+  G  + G   +FY  K K  L       T ++D   + G ++ ++E+ + M  
Sbjct: 329 VLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLG--TQLIDFYAKCGYIDRSVEVFKEMSF 386

Query: 314 EPDGAVWGALL 324
           + +   W AL+
Sbjct: 387 K-NVFTWTALI 396



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 119/232 (51%), Gaps = 8/232 (3%)

Query: 97  SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS 156
           ++DY   +F+ + +     +N MI G A      + L L+++M    V  D  TF  VL 
Sbjct: 70  TIDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLK 129

Query: 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS 216
           +C+ + A   G +V   I  +GF SN F+ N LI MYA CG +  AR +FDGMP +++V+
Sbjct: 130 ACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVA 189

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL---EYFY 273
           W +++ GY  +G  +  V+LF ++L+  I  D    +SVL AC      + G    EY  
Sbjct: 190 WNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIV 249

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
                 GL+      T ++D+  + GQ++ A +L + M  + D   W A++ 
Sbjct: 250 SK----GLRRNNTLTTSLIDMYAKCGQVDTARKLFDEM-DKRDVVAWSAMIS 296


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/526 (41%), Positives = 318/526 (60%), Gaps = 13/526 (2%)

Query: 2   FDESIK-----STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPI 56
           FD+++K          V + A+I+GY+ +    EA+  F K+ E G++ +S +++ +L  
Sbjct: 165 FDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAA 224

Query: 57  CVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
           C   G    G          G+  +  V   L+ MYVKCG+++    +F  +PEK +++W
Sbjct: 225 CARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSW 284

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
           + MI GYA NGL    L+L+ +M+S  + PD  T VGVLS+CA LGA  +G+     +  
Sbjct: 285 STMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDR 344

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
           N F SNP L  ALI+MY++CG++ +A  IF  M +K  V W A++ G  ++GH +    L
Sbjct: 345 NEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSL 404

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           F  + K GIRPD   F+ +L  C+H G  ++G ++F  MK  + L P  EHY CMVDLLG
Sbjct: 405 FSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLG 464

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356
           RAG LNEA +LI +M ++P+  VWGALLG CK+HK+  LAE    K+I+LEP N+G YV 
Sbjct: 465 RAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQ 524

Query: 357 LSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRM 416
           LSNIYS     +   ++R  M+E++++K    S++E+ G VH F+VGD++H  + +IY  
Sbjct: 525 LSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAK 584

Query: 417 LDKLENLVQEHDGTKRSD------QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVM 470
           LD+L   ++       ++      ++  +EH      HSEKLA+AFG+I + P   I V+
Sbjct: 585 LDELGRELKAVGHVPTTEFVLFDIEEEEKEHF--LGYHSEKLAVAFGLIASPPNHVIRVV 642

Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KNLR+CGDCH  IKL+SKI  R+ I+RD  RFH F  G CSC+DYW
Sbjct: 643 KNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 102/310 (32%), Positives = 175/310 (56%), Gaps = 2/310 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N +I G V      +A+ L+G MR  G   N+ T+  +L  C     + LG+  H + V
Sbjct: 82  WNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLV 141

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K G D D  V   L+++YVKC + D   K+FD +P+K +++W A+I+GY  +G     + 
Sbjct: 142 KAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIG 201

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
            ++++  +G+ PD+ + V VL++CA LG  + G  +++ I  +G G N F+  +L++MY 
Sbjct: 202 AFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYV 261

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CGNL++A  IF  MP K +VSW+ +I GY  +G  + A+ LF +M    ++PD    V 
Sbjct: 262 KCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVG 321

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VLSAC+  G  D G+ +   + ++      P   T ++D+  + G + +A E+  +M  +
Sbjct: 322 VLSACATLGALDLGI-WASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAM-KK 379

Query: 315 PDGAVWGALL 324
            D  VW A++
Sbjct: 380 KDRVVWNAMM 389



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 125/255 (49%), Gaps = 2/255 (0%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   ++  LD D  + N ++   +  GS +Y + +F QV E  +  WN MI G       
Sbjct: 36  HARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCF 95

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              + LY  M+  G  P+  T   VL +CA      +GL++   +   G+  + F+  +L
Sbjct: 96  DDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSL 155

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           +++Y +C N   A  +FD +P K VVSWTAII GY   GH   A+  F ++L+ G++PD 
Sbjct: 156 LSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDS 215

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
            + V VL+AC+  G    G E+     +  G+       T ++D+  + G L  A  LI 
Sbjct: 216 FSLVKVLAACARLGDCTSG-EWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERA-NLIF 273

Query: 310 SMLVEPDGAVWGALL 324
           S + E D   W  ++
Sbjct: 274 SAMPEKDIVSWSTMI 288


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 211/520 (40%), Positives = 312/520 (60%), Gaps = 6/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  +    T  +N++ +GY  +    E V LF +M E  +  + VT++ +L  C   
Sbjct: 181 VFDEMSERNVRT--WNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRL 238

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L LG   +    + GL  + ++   L+ MY KCG VD  R+LFDQ+  + ++ W+AMI
Sbjct: 239 ADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMI 298

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGY+Q       L+L+ EM+   + P+ +T V +LSSCA LGA   G  V   I+     
Sbjct: 299 SGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMK 358

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
               L  AL++ YA+CG+++ +  +F  MP K V+SWT +I G   +G G+ A++ F  M
Sbjct: 359 LTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLM 418

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           L+  + P+   F+ VLSACSHAGL D+G + F  M   +G++P  EHY CMVD+LGRAG 
Sbjct: 419 LEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGL 478

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           + EA + I++M ++P+  +W  LL +CK+HKNVE+ E +  ++I LEP ++G Y+LLSNI
Sbjct: 479 IEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNI 538

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+     +  ++VR  M+E+ +KK PG S +EL G +H F   D  H Q+ EIY  ++ +
Sbjct: 539 YASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDM 598

Query: 421 ENLVQEHDGTKRSDQKNSEEHLNDTEV----HSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
              ++       + +   +   +D E     HSEKLAIAFG+I + PGT I + KNLR+C
Sbjct: 599 MKQIKSAGYVPNTAEARLDAEEDDKESSVSHHSEKLAIAFGLIKSPPGTTIRITKNLRVC 658

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DCH   KLVSK+ +R+ +VRD TRFHHFK G CSC DYW
Sbjct: 659 TDCHNATKLVSKVFNREIVVRDRTRFHHFKEGSCSCNDYW 698



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 171/346 (49%), Gaps = 33/346 (9%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           YN +I G+ L     EA+ LF +M E  V+ +  T  C+L +C     L  G   H + +
Sbjct: 92  YNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIM 151

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K G      V N L+ MY  CG V+  R++FD++ E+ + TWN+M +GY ++G    V++
Sbjct: 152 KCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVK 211

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+ EM  L +  D VT V VL++C  L    +G  + + ++  G   NP L  +L++MYA
Sbjct: 212 LFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYA 271

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG +  AR +FD M R+ VV+W+A+I GY        A+ LF EM K+ I P+    VS
Sbjct: 272 KCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVS 331

Query: 255 VLSACSHAGLTDKGLEYFYGMKNK----------------------------YGLQPGPE 286
           +LS+C+  G  + G    + +K K                            +G  P   
Sbjct: 332 ILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKN 391

Query: 287 --HYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGAC 327
              +T ++  L   GQ  +ALE    ML   VEP+   +  +L AC
Sbjct: 392 VLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSAC 437



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 118/229 (51%), Gaps = 2/229 (0%)

Query: 97  SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS 156
           S+DY   +F Q+ E     +N MI G+         + L++EM    V PD  TF  +L 
Sbjct: 73  SMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILK 132

Query: 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS 216
            C+ L A S G ++   I   GFGS+ F+ N LI+MYA CG ++ AR +FD M  + V +
Sbjct: 133 VCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRT 192

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
           W ++  GY   G+ E  V+LF EML+  IR D    VSVL+AC      + G E+     
Sbjct: 193 WNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELG-EWINRYV 251

Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
            + GL+  P   T +VD+  + GQ++ A  L + M    D   W A++ 
Sbjct: 252 EEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQM-DRRDVVAWSAMIS 299


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/521 (42%), Positives = 312/521 (59%), Gaps = 18/521 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++A ISGY    L  EA+ +  +M   G++ N VT++ +L  C   G L  G   HC 
Sbjct: 331 VTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCY 390

Query: 73  CVKFGLDL-------DFSVGNCLMTMYVKCGSVDYGRKLFDQVP--EKGLITWNAMISGY 123
            +K+ +DL       +  V N L+ MY KC  VD  R +FD +   E+ ++TW  MI GY
Sbjct: 391 AIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGY 450

Query: 124 AQNGLATHVLELYREM--KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGS 181
           +Q+G A   LEL  EM  +     P+A T    L +CA L A S+G ++      N   +
Sbjct: 451 SQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNA 510

Query: 182 NP-FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            P F++N LI+MYA+CG++  AR +FD M  K  V+WT+++ GYG+HG+GE A+ +F+EM
Sbjct: 511 VPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEM 570

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            + G + DG   + VL ACSH+G+ D+G+EYF  MK  +G+ PGPEHY C+VDLLGRAG+
Sbjct: 571 RRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGR 630

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           LN AL LIE M +EP   VW ALL  C+IH  VEL E A  K+ +L   N G Y LLSN+
Sbjct: 631 LNAALRLIEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNM 690

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+ A     + R+R +MR + +KK PG S+VE       F VGD+ H    EIY++L   
Sbjct: 691 YANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDH 750

Query: 421 ENLVQE-----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRI 475
              +++       G    D  + EE  +    HSEKLA+A+GI+ T  G  I + KNLR+
Sbjct: 751 MQRIKDIGYVPETGFALHDV-DDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRV 809

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           CGDCH     +S+I+D + I+RD++RFHHFK+G CSCK YW
Sbjct: 810 CGDCHTAFTYMSRIIDHEIILRDSSRFHHFKNGLCSCKGYW 850



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/378 (29%), Positives = 174/378 (46%), Gaps = 52/378 (13%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVD 59
           VFDE        V +N++I  Y        A+ +F KM  E G   + +T++ +LP C  
Sbjct: 184 VFDE--MPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCAS 241

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
            G   LG   H   V   +  +  VGNCL+ MY K G +D    +F  +P K +++WNAM
Sbjct: 242 VGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAM 301

Query: 120 I-----------------------------------SGYAQNGLATHVLELYREMKSLGV 144
           +                                   SGYAQ GL    L + R+M S G+
Sbjct: 302 VAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGI 361

Query: 145 CPDAVTFVGVLSSCAHLGA-------HSVGLEVEQQIQANGFGSNPFLNNALINMYARCG 197
            P+ VT + VLS CA +GA       H   ++    ++ NG G    + N LI+MYA+C 
Sbjct: 362 KPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCK 421

Query: 198 NLKKARAIFDGMPRKT--VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG--IRPDGTAFV 253
            +  ARA+FD +  K   VV+WT +IGGY  HG    A++L  EM +     RP+     
Sbjct: 422 KVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTIS 481

Query: 254 SVLSAC-SHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
             L AC S A L+     + Y ++N+    P      C++D+  + G + +A  + ++M+
Sbjct: 482 CALVACASLAALSIGKQIHAYALRNQQNAVPLFVS-NCLIDMYAKCGDIGDARLVFDNMM 540

Query: 313 VEPDGAVWGALLGACKIH 330
            E +   W +L+    +H
Sbjct: 541 -EKNEVTWTSLMTGYGMH 557



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 106/381 (27%), Positives = 174/381 (45%), Gaps = 47/381 (12%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N+LI  Y  N   ++ +S F  M       ++ T   +   C +   +  G   H +  
Sbjct: 95  WNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSR 154

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             G   +  VGN L+ MY +CGS+   RK+FD++P   +++WN++I  YA+ G     LE
Sbjct: 155 VTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALE 214

Query: 135 LYREMKS-LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
           ++ +M +  G  PD +T V VL  CA +G  S+G +       +    N F+ N L++MY
Sbjct: 215 MFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMY 274

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD--------------- 238
           A+ G + +A  +F  MP K VVSW A++ GY   G  E AV+LF+               
Sbjct: 275 AKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWS 334

Query: 239 --------------------EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKN 277
                               +ML SGI+P+    +SVLS C+  G    G E + Y +K 
Sbjct: 335 AAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKY 394

Query: 278 KYGLQP---GPEHYTC--MVDLLGRAGQLNEALELIESMLV-EPDGAVWGALLGACKIH- 330
              L+    G E+     ++D+  +  +++ A  + +S+   E D   W  ++G    H 
Sbjct: 395 PMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHG 454

Query: 331 ---KNVELAELAFGKVIKLEP 348
              K +EL    F +  +  P
Sbjct: 455 DANKALELLSEMFEEDCQTRP 475



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 129/259 (49%), Gaps = 6/259 (2%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP--EKGLITWNAMISGYAQNG 127
           H   + FG+ L  ++ + L++ Y+  G + +   L  + P  + G+  WN++I  Y  NG
Sbjct: 48  HQKLLSFGI-LTLNLTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNG 106

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
            A   L  +  M SL   PD  TF  V  +C  + +   G       +  GF SN F+ N
Sbjct: 107 RANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGN 166

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS-GIR 246
           AL+ MY+RCG+L  AR +FD MP   VVSW +II  Y   G  ++A+++F +M    G R
Sbjct: 167 ALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFR 226

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           PD    V+VL  C+  G    G + F+G      +        C+VD+  + G ++EA  
Sbjct: 227 PDDITLVNVLPPCASVGTRSLGKQ-FHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANT 285

Query: 307 LIESMLVEPDGAVWGALLG 325
           +  +M V+ D   W A++ 
Sbjct: 286 VFSNMPVK-DVVSWNAMVA 303



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 118/248 (47%), Gaps = 8/248 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEI--NSVTMLCLLPICV 58
           +FD         V +  +I GY  +   ++A+ L  +M E+  +   N+ T+ C L  C 
Sbjct: 429 MFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACA 488

Query: 59  DPGYLWLGMCCHCICVKFGLD-LDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWN 117
               L +G   H   ++   + +   V NCL+ MY KCG +   R +FD + EK  +TW 
Sbjct: 489 SLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWT 548

Query: 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
           ++++GY  +G     L ++ EM+ +G   D VT + VL +C+H G    G+E   +++ +
Sbjct: 549 SLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTD 608

Query: 178 -GFGSNPFLNNALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGH---GEV 232
            G    P     L+++  R G L  A  + + MP     V W A++    IHG    GE 
Sbjct: 609 FGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGKVELGEY 668

Query: 233 AVQLFDEM 240
           A +   E+
Sbjct: 669 AAKKITEL 676


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/559 (40%), Positives = 323/559 (57%), Gaps = 51/559 (9%)

Query: 5   SIKSTHLTVCYNALISGYVLNS-----LVSEAVSLFGKMREQGVEINSVTMLCLLPICVD 59
           S+   H T   N  +  +++N+     L   A+S + +M    ++ N+ T+  LL  C  
Sbjct: 74  SVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACT- 132

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT---- 115
              L      H   +KFGL     V   L+  Y + G V   +KLFD +PE+ L++    
Sbjct: 133 ---LHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAM 189

Query: 116 ---------------------------WNAMISGYAQNGLATHVLELYREMKSL------ 142
                                      WN MI GYAQ+G     L  +R+M  +      
Sbjct: 190 LTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGN 249

Query: 143 -GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKK 201
             V P+ +T V VLSSC  +GA   G  V   ++ NG   N  +  AL++MY +CG+L+ 
Sbjct: 250 GKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLED 309

Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261
           AR +FD M  K VV+W ++I GYGIHG  + A+QLF EM   G++P    FV+VL+AC+H
Sbjct: 310 ARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAH 369

Query: 262 AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWG 321
           AGL  KG E F  MK+ YG++P  EHY CMV+LLGRAG++ EA +L+ SM VEPD  +WG
Sbjct: 370 AGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWG 429

Query: 322 ALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERR 381
            LL AC+IH NV L E     ++     ++G YVLLSN+Y+ ARN  G+ +VR MM+   
Sbjct: 430 TLLWACRIHSNVSLGEEIAEILVSNGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSG 489

Query: 382 LKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD----QKN 437
           ++K+PG S +E+K RVH F+ GDR H ++ +IY ML+K+   ++E   T ++D       
Sbjct: 490 VEKEPGCSSIEVKNRVHEFVAGDRRHPRSKDIYSMLEKMNGWLKERHYTPKTDAVLHDIG 549

Query: 438 SEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVR 497
            +E     EVHSEKLA+AFG+I+TSPG  I ++KNLR+C DCH  +K++SKI  R+ I+R
Sbjct: 550 EQEKEQSLEVHSEKLALAFGLISTSPGAAIKIVKNLRVCLDCHAVMKIMSKISGRKIIMR 609

Query: 498 DATRFHHFKSGFCSCKDYW 516
           D  RFHHF++G CSC+DYW
Sbjct: 610 DRNRFHHFENGSCSCRDYW 628



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 131/311 (42%), Gaps = 46/311 (14%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L   Y   G + +   LF + P   +  W  +I+ +A   L  H L  Y +M +  + P+
Sbjct: 61  LQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPN 120

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
           A T   +L +C    A +    V       G  S+ +++  L++ YAR G++  A+ +FD
Sbjct: 121 AFTLSSLLKACTLHPARA----VHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFD 176

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM--------------------------- 240
            MP +++VS+TA++  Y  HG    A  LF+ M                           
Sbjct: 177 AMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVF 236

Query: 241 -----------LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYT 289
                          +RP+    V+VLS+C   G  + G ++ +      G++      T
Sbjct: 237 FRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECG-KWVHSYVENNGIKVNVRVGT 295

Query: 290 CMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV--IKLE 347
            +VD+  + G L +A ++ + M  + D   W +++    IH   + A   F ++  I ++
Sbjct: 296 ALVDMYCKCGSLEDARKVFDVMEGK-DVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVK 354

Query: 348 PMNTGYYVLLS 358
           P +  +  +L+
Sbjct: 355 PSDITFVAVLT 365



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 11/147 (7%)

Query: 168 LEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH 227
           L++   +   G   +P LN  L   YA  G+L  +  +F   P   V  WT II     H
Sbjct: 40  LQIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINA---H 96

Query: 228 GHGEV---AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG 284
            H ++   A+  + +ML   I+P+     S+L AC     T       +    K+GL   
Sbjct: 97  AHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKAC-----TLHPARAVHSHAIKFGLSSH 151

Query: 285 PEHYTCMVDLLGRAGQLNEALELIESM 311
               T +VD   R G +  A +L ++M
Sbjct: 152 LYVSTGLVDAYARGGDVASAQKLFDAM 178


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/506 (43%), Positives = 313/506 (61%), Gaps = 5/506 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N LI GY  N     A+ L+ KM + G+  ++ T+  +L  C     +  G   H   +
Sbjct: 116 WNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVI 175

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K G + D  VG  L+ MY KCG V    ++FD++  +  + WN+M++ YAQNG     + 
Sbjct: 176 KSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESIS 235

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L REM + GV P   T V V+SS A +     G E+      +GF SN  +  ALI+MYA
Sbjct: 236 LCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYA 295

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG++K A A+F+ +  K VVSW AII GY +HG    A+ LFD+M K   RPD   FV 
Sbjct: 296 KCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMRKED-RPDHITFVG 354

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VL+ACS   L D+G   +  M   YG+ P  +HYTCM+DLLG  GQL+EA +LI +M V+
Sbjct: 355 VLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVK 414

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
           PD  VWGALL +CKIH NVELAELA  K+I+LEP ++G YV+L+N+Y+++   +G+ ++R
Sbjct: 415 PDSGVWGALLNSCKIHGNVELAELALEKLIELEPDDSGNYVILANMYAQSGKWEGVEKLR 474

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH----DGT 430
            +M ++R+KK+   S++E+K +V+ F+ GD +H  +  IY  L +LE L+ E     D  
Sbjct: 475 QVMIDKRIKKNIACSWIEVKNKVYAFLAGDVSHSNSDAIYAELKRLEGLMHEAGYAPDTG 534

Query: 431 KRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIV 490
                   +E  +    HSE+LAIAFG+I+TSPGT +++ KNLRIC DCH+ IK +SKI+
Sbjct: 535 SVFHDVEEDEKTSMVCSHSERLAIAFGLISTSPGTRLLITKNLRICEDCHVAIKFISKIM 594

Query: 491 DRQFIVRDATRFHHFKSGFCSCKDYW 516
           +R+  VRD  R+H FK G CSC D+W
Sbjct: 595 EREITVRDVNRYHSFKHGMCSCGDHW 620



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 138/278 (49%), Gaps = 2/278 (0%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           LL  C+D   L  G   H      G+  +  +   L+ +Y    S+   R LFD++P++ 
Sbjct: 53  LLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPKQN 112

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
           L  WN +I GYA NG   + + LY +M   G+ PD  T   VL +C+ L A   G  + +
Sbjct: 113 LFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHE 172

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
            +  +G+  + F+  ALI+MYA+CG +  A  +FD +  +  V W +++  Y  +GH + 
Sbjct: 173 YVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDE 232

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
           ++ L  EM  +G+RP     V+V+S+ +       G E  +G   ++G Q   +  T ++
Sbjct: 233 SISLCREMAANGVRPTEATLVTVISSSADVACLPYGRE-IHGFGWRHGFQSNDKVKTALI 291

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           D+  + G +  AL L E  L E     W A++    +H
Sbjct: 292 DMYAKCGSVKVALALFER-LREKRVVSWNAIITGYAMH 328



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 131/260 (50%), Gaps = 9/260 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+ +      V +N++++ Y  N    E++SL  +M   GV     T++ ++    D 
Sbjct: 205 VFDKIVVRD--AVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADV 262

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H    + G   +  V   L+ MY KCGSV     LF+++ EK +++WNA+I
Sbjct: 263 ACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAII 322

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GYA +GLA   L+L+ +M+     PD +TFVGVL++C+       G  +   +    +G
Sbjct: 323 TGYAMHGLAVGALDLFDKMRKEDR-PDHITFVGVLAACSRGRLLDEGRAL-YNLMVRDYG 380

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLF 237
             P + +   +I++   CG L +A  +   M  K     W A++    IHG+ E+A    
Sbjct: 381 ITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELAELAL 440

Query: 238 DEMLKSGIRPDGTAFVSVLS 257
           +++++  + PD +    +L+
Sbjct: 441 EKLIE--LEPDDSGNYVILA 458



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 97/209 (46%), Gaps = 20/209 (9%)

Query: 126 NGLATHVLELYREMKSLGVCPDAVT----FVGVLSSCAHLGAHSVGLEVEQQIQANGFGS 181
           + LATH      +  S+   P   T    +  +L SC    A + G ++  Q    G   
Sbjct: 27  HSLATH------QTASVDSFPPQPTTHYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAY 80

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           N  L   L+++YA   +L  AR +FD +P++ +  W  +I GY  +G  + A+ L+ +ML
Sbjct: 81  NQDLATKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKML 140

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY----TCMVDLLGR 297
             G+RPD      VL ACS      +G        ++Y ++ G E        ++D+  +
Sbjct: 141 DYGLRPDNFTLPFVLKACSALSAIGEGRSI-----HEYVIKSGWERDLFVGAALIDMYAK 195

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGA 326
            G + +A  + + ++V  D  +W ++L A
Sbjct: 196 CGCVMDAGRVFDKIVVR-DAVLWNSMLAA 223


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/527 (42%), Positives = 318/527 (60%), Gaps = 21/527 (3%)

Query: 1    VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
            +FD+ +   H+T  +NA+I G        EA+SLF +M+ +G   ++ T + +L   VD 
Sbjct: 581  LFDK-LSVRHVTT-WNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDE 638

Query: 61   GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
              L      H      GL +D  VGN L+  Y KCG+V Y +++FD + E+ + TW  MI
Sbjct: 639  EALEWVKEVHSHATDAGL-VDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMI 697

Query: 121  SGYAQNGLA----THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
             G AQ+G      +H L++ RE    G+ PDA T+V +LS+CA  GA     EV     +
Sbjct: 698  GGLAQHGCGHDAFSHFLQMLRE----GIVPDATTYVSILSACASTGALEWVKEVHNHAVS 753

Query: 177  NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
             G  S+  + NAL++MYA+CG++  AR++FD M  + V SWT +IGG   HG G  A+  
Sbjct: 754  AGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDF 813

Query: 237  FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
            F +M   G +P+G ++V+VL+ACSHAGL D+G   F  M   YG++P  EHYTCMVDLLG
Sbjct: 814  FVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLG 873

Query: 297  RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356
            RAG L EA   I +M +EPD A WGALLGAC  + N+E+AE A  + +KL+P +   YVL
Sbjct: 874  RAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVL 933

Query: 357  LSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRM 416
            LSNIY+     +  + VR MM+ + ++K+PG S++E+  R+H F+VGD +H ++ EIY  
Sbjct: 934  LSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSFVVGDTSHPESKEIYAQ 993

Query: 417  LDKLENLVQEHDGT-------KRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVV 469
            L+ L   ++            + +DQ++ E+ L     HSEKLAI +G+++T     I V
Sbjct: 994  LNDLIERLKAKGYVPDTRLVLRNTDQEHKEQALCS---HSEKLAIVYGLMHTQSKDPIRV 1050

Query: 470  MKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
             KNLR+C DCH   K +SKI  R+ + RDA RFHHFK G CSC DYW
Sbjct: 1051 YKNLRVCSDCHTATKFISKITGREIVARDAKRFHHFKDGVCSCGDYW 1097



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 168/326 (51%), Gaps = 4/326 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+ +K       +  +I GY       +A+ ++ KMR++  + N +T L +L  C  P
Sbjct: 175 VFDKLLKKN--IYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCP 232

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H   ++ G   D  V   L+ MYVKCGS++  + +FD++ E+ +I+W  MI
Sbjct: 233 VNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMI 292

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            G A  G       L+ +M+  G  P++ T+V +L++ A  GA     EV       G  
Sbjct: 293 GGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLA 352

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            +  + NAL++MYA+ G++  AR +FDGM  + + SWT +IGG   HG G+ A  LF +M
Sbjct: 353 LDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQM 412

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTD-KGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
            ++G  P+ T ++S+L+A + A  +  + ++  +    + G          ++ +  + G
Sbjct: 413 QRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCG 472

Query: 300 QLNEALELIESMLVEPDGAVWGALLG 325
            +++A  + + M  + D   W A++G
Sbjct: 473 SIDDARLVFDGM-CDRDVISWNAMMG 497



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 166/322 (51%), Gaps = 6/322 (1%)

Query: 13  VCYNALISGYVLNS----LVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           VC NA + G    +       +AV++     +QG+ I+S + + +L  C+    + L   
Sbjct: 80  VCANASVDGAAEQTHNVITAKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQ 139

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            H   +K G++ +  V N L+ +Y++CG +   R++FD++ +K +  W  MI GYA+ G 
Sbjct: 140 VHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGH 199

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
           A   + +Y +M+     P+ +T++ +L +C        G ++   I  +GF S+  +  A
Sbjct: 200 AEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETA 259

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           L+NMY +CG+++ A+ IFD M  + V+SWT +IGG   +G G+ A  LF +M + G  P+
Sbjct: 260 LVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPN 319

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
              +VS+L+A + AG  +   E      N  GL         +V +  ++G +++A  + 
Sbjct: 320 SYTYVSILNANASAGALEWVKEVHSHAVNA-GLALDLRVGNALVHMYAKSGSIDDARVVF 378

Query: 309 ESMLVEPDGAVWGALLGACKIH 330
           + M  E D   W  ++G    H
Sbjct: 379 DGM-TERDIFSWTVMIGGLAQH 399



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/360 (29%), Positives = 170/360 (47%), Gaps = 31/360 (8%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLL---PICVDPGYLWLGMCCHC 71
           +  +I G   +    EA SLF +M+  G   N  T L +L    I       W+ +  H 
Sbjct: 389 WTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVV-HK 447

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              + G   D  +GN L+ MY KCGS+D  R +FD + ++ +I+WNAM+ G AQNG    
Sbjct: 448 HAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHE 507

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
              ++ +M+  G+ PD+ T++ +L++     A     EV +     G  S+  + +A I+
Sbjct: 508 AFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIH 567

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY RCG++  AR +FD +  + V +W A+IGG      G  A+ LF +M + G  PD T 
Sbjct: 568 MYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATT 627

Query: 252 FVSVLSAC-----------SHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           F+++LSA             H+  TD GL           L+ G      +V    + G 
Sbjct: 628 FINILSANVDEEALEWVKEVHSHATDAGL---------VDLRVG----NALVHTYSKCGN 674

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
           +  A ++ + M VE +   W  ++G    H     A   F ++++  + P  T Y  +LS
Sbjct: 675 VKYAKQVFDDM-VERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILS 733



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 108/217 (49%), Gaps = 6/217 (2%)

Query: 113 LITWNAMISGYAQNG----LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGL 168
           L+  NA + G A+       A   + + +     G+  D+ ++V +L  C       +  
Sbjct: 79  LVCANASVDGAAEQTHNVITAKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAK 138

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
           +V   I  +G   N ++ N L+ +Y RCG L+ AR +FD + +K +  WT +IGGY  +G
Sbjct: 139 QVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYG 198

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY 288
           H E A++++D+M +   +P+   ++S+L AC    +  K  +  +    + G Q      
Sbjct: 199 HAEDAMRVYDKMRQECGQPNEITYLSILKACC-CPVNLKWGKKIHAHIIQSGFQSDVRVE 257

Query: 289 TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           T +V++  + G + +A +LI   +VE +   W  ++G
Sbjct: 258 TALVNMYVKCGSIEDA-QLIFDKMVERNVISWTVMIG 293


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/526 (41%), Positives = 316/526 (60%), Gaps = 22/526 (4%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + ++A+I+GY       EA+  F +M   G E NSVT++ LL  C   G L  GM  H  
Sbjct: 361 ITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAY 420

Query: 73  CVKFGL------------DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP--EKGLITWNA 118
            +K  L              D  V N L+ MY KC S    R +FD +P  E+ ++TW  
Sbjct: 421 SLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTV 480

Query: 119 MISGYAQNGLATHVLELYREM--KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
           MI GYAQ G +   L+++ EM  K   V P+A T   +L +CAHL A  +G ++   +  
Sbjct: 481 MIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTR 540

Query: 177 NGF--GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
           +     S  F+ N LI+MY++CG++  AR +FD MP++  VSWT+++ GYG+HG G+ A+
Sbjct: 541 HHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEAL 600

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
            +FD+M K+G  PD  +F+ +L ACSH+G+ D+GL YF  M+  Y +    EHY C++DL
Sbjct: 601 DIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDL 660

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           L R G+L++A + I+ M +EP   +W ALL AC++H NVELAE A  K++ ++  N G Y
Sbjct: 661 LARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSY 720

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
            L+SNIY+ AR    + R+R +M++  +KK PG S+V+ K     F VGDR+H  + EIY
Sbjct: 721 TLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIY 780

Query: 415 RMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVM 470
            +L++L   ++       ++      + EE  N    HSEKLA+A+G++ TSPG  I + 
Sbjct: 781 SLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLSEHSEKLALAYGLLTTSPGCPIRIT 840

Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KNLR+CGDCH     +SKIVD + IVRD++RFHHFK+G CSC  YW
Sbjct: 841 KNLRVCGDCHSAFTYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 130/517 (25%), Positives = 230/517 (44%), Gaps = 90/517 (17%)

Query: 1   VFDE-SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM----REQGVEINS--VTMLCL 53
           VFDE + K     + +N++++ +V  S    A+ LF +M     E+     S  ++++ +
Sbjct: 206 VFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNI 265

Query: 54  LPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL 113
           LP C     L      H   ++ G   D  V N L+  Y KCGS++   K+F+ +  K +
Sbjct: 266 LPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDV 325

Query: 114 ITWNAMIS-----------------------------------GYAQNGLATHVLELYRE 138
           ++WNAM++                                   GYAQ G +   L+ +++
Sbjct: 326 VSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQ 385

Query: 139 MKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ------------QIQANGFGSNPFLN 186
           M   G  P++VT + +LS+CA LGA S G+E+                  +G G +  + 
Sbjct: 386 MILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVY 445

Query: 187 NALINMYARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS- 243
           NALI+MY++C + K AR+IFD +PR  + VV+WT +IGGY  +G    A+++F EM+   
Sbjct: 446 NALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKP 505

Query: 244 -GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYT-CMVDLLGRAGQL 301
             + P+      +L AC+H      G +    +   +  +P       C++D+  + G +
Sbjct: 506 YAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDV 565

Query: 302 NEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLL-- 357
           + A  + +SM  + +   W +++    +H   + A   F K+ K    P +  + VLL  
Sbjct: 566 DTARNVFDSM-PKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYA 624

Query: 358 ---SNIYSEARNLDGIMR---------------VRMMMRERRLKKDPGYSYV-----ELK 394
              S +  +  N   IMR               + ++ R  RL  D  +  +     E  
Sbjct: 625 CSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRL--DKAWKTIQEMPMEPS 682

Query: 395 GRVHLFMVGDRNHHQTVEIYR-MLDKLENLVQEHDGT 430
             + + ++     H  VE+    L+KL N+  E+DG+
Sbjct: 683 AVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGS 719



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 147/305 (48%), Gaps = 10/305 (3%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +N L+  ++    +  A+ +  +M   G + +  T+   L  C +      G   H 
Sbjct: 114 AVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYCCGRALHG 173

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL---ITWNAMISGYAQNGL 128
           +    G + +  V N L+ MY +CGS++    +FD++  KG+   I+WN++++ + +   
Sbjct: 174 LICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSN 233

Query: 129 ATHVLELYREM------KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN 182
               LEL+ EM      K+     D ++ V +L +CA L A     E+      NG  ++
Sbjct: 234 PRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFAD 293

Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
            F+ NALI+ YA+CG++  A  +F+ M  K VVSW A++ GY   G+   A +LF+ M K
Sbjct: 294 AFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRK 353

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
             I  D   + +V++  +  G + + L+ F  M    G +P       ++      G L+
Sbjct: 354 ENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILD-GSEPNSVTIISLLSACASLGALS 412

Query: 303 EALEL 307
           + +E+
Sbjct: 413 QGMEI 417



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 121/255 (47%), Gaps = 19/255 (7%)

Query: 83  SVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL 142
           S+G  ++  Y+ CG+      + ++V     + WN ++  + + G     + +   M   
Sbjct: 84  SLGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRA 143

Query: 143 GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202
           G  PD  T    L +C  L ++  G  +   I  NGF SN F+ NAL+ MY+RCG+L+ A
Sbjct: 144 GTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDA 203

Query: 203 RAIFDGMPRK---TVVSWTAIIGGYGIHGHGEVAVQLFDEML------KSGIRPDGTAFV 253
             +FD + RK    V+SW +I+  +    +   A++LF EM        +  R D  + V
Sbjct: 204 SLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIV 263

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPG--PEHYTC--MVDLLGRAGQLNEALELIE 309
           ++L AC+      +  E      + Y ++ G   + + C  ++D   + G +N+A+++  
Sbjct: 264 NILPACASLKALPQIKEI-----HSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFN 318

Query: 310 SMLVEPDGAVWGALL 324
            M  + D   W A++
Sbjct: 319 VMEFK-DVVSWNAMV 332



 Score = 38.5 bits (88), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 39/86 (45%)

Query: 174 IQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVA 233
           + ++ + S   L   ++  Y  CG  K A ++ + +     V W  ++  +   GH + A
Sbjct: 74  LPSHSYVSPKSLGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRA 133

Query: 234 VQLFDEMLKSGIRPDGTAFVSVLSAC 259
           + +   ML++G +PD       L AC
Sbjct: 134 IGVSCRMLRAGTKPDHFTLPYALKAC 159


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/536 (41%), Positives = 318/536 (59%), Gaps = 39/536 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  LISG++     +E+V LF +MR + + ++   +  L+  C     L LG   H +
Sbjct: 357 VAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSL 416

Query: 73  CVKFGLDLDFSVGNCLMTMYVKC-------------------------------GSVDYG 101
           C+K G      V N L++MY KC                               G+V   
Sbjct: 417 CLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKA 476

Query: 102 RKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG-VCPDAVTFVGVLSSCAH 160
           R+ FD + EK +ITWNAM+  Y Q+G     L +Y+ M S   V PD VT+V +   CA 
Sbjct: 477 REFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCAD 536

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           LGA+ +G ++  +    G   +  + NA+I MY++CG + +AR +FD +  K +VSW A+
Sbjct: 537 LGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAM 596

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           I GY  HG G+ A+++FD++LK G +PD  ++V+VLS CSH+GL  +G  YF  MK  + 
Sbjct: 597 ITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHN 656

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           + PG EH++CMVDLLGRAG L EA +LI+ M ++P   VWGALL ACKIH N ELAELA 
Sbjct: 657 ISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAA 716

Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400
             V +L+  ++G Y+L++ IY++A   D   ++R +MR++ +KK+PGYS++E+  +VH+F
Sbjct: 717 KHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVF 776

Query: 401 MVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIIN 460
              D +H Q + I + LD+L   +    G  R+D   SE H      HSEKLA+AFG++ 
Sbjct: 777 KADDVSHPQVLAIRKKLDELMEKIARL-GYVRTDSTRSEIH------HSEKLAVAFGLMT 829

Query: 461 TSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
                 I +MKNLRICGDCH  IKL+S +  R+F++RDA RFHHF  G CSC DYW
Sbjct: 830 LPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW 885



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/445 (23%), Positives = 189/445 (42%), Gaps = 47/445 (10%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N ++S    +  V EA+ +   M+ +GV ++S T    L  C     L  G   H  
Sbjct: 256 VSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQ 315

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++    +D  V + L+ +Y K G     + +F+ + ++  + W  +ISG+ Q G  T  
Sbjct: 316 VIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTES 375

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           +EL+ +M++  +  D      ++S C       +G ++      +G      ++N+LI+M
Sbjct: 376 VELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISM 435

Query: 193 YARC-------------------------------GNLKKARAIFDGMPRKTVVSWTAII 221
           YA+C                               GN+ KAR  FDGM  K V++W A++
Sbjct: 436 YAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAML 495

Query: 222 GGYGIHGHGEVAVQLFDEMLKSG-IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           G Y  HG  E  ++++  ML    +RPD   +V++   C+  G    G +   G   K G
Sbjct: 496 GAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLG-DQIIGRTVKVG 554

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           L         ++ +  + G++ EA ++ + + V+ D   W A++     H   + A   F
Sbjct: 555 LIIDTSVANAVITMYSKCGRILEARKVFDFLNVK-DIVSWNAMITGYSQHGMGKQAIEIF 613

Query: 341 GKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSY----VELK 394
             ++K   +P    Y  +LS         +G     MM R   +   PG  +    V+L 
Sbjct: 614 DDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNIS--PGLEHFSCMVDLL 671

Query: 395 GRV-HLF----MVGDRNHHQTVEIY 414
           GR  HL     ++ D     T E++
Sbjct: 672 GRAGHLTEAKDLIDDMPMKPTAEVW 696



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/439 (23%), Positives = 196/439 (44%), Gaps = 40/439 (9%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEI-NSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +N L+SGY  +     ++  F  M   G    N+ T+ C +  C   G+  L +    + 
Sbjct: 125 WNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMV 184

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLF---------------------------- 105
            KF    D  V   L+ M+V+CG+VD   +LF                            
Sbjct: 185 QKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHAL 244

Query: 106 ---DQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162
              D +PE+ +++WN M+S  +Q+G     L++  +M+S GV  D+ T+   L++CA L 
Sbjct: 245 ELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLS 304

Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIG 222
           +   G ++  Q+  N    +P++ +AL+ +YA+ G  K+A+ +F+ +  +  V+WT +I 
Sbjct: 305 SLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLIS 364

Query: 223 GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQ 282
           G+  +G    +V+LF++M    +  D  A  +++S C        G +  + +  K G  
Sbjct: 365 GFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQ-LHSLCLKSGQI 423

Query: 283 PGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGK 342
                   ++ +  +   L  A E I   + E D   W +++ A     NV  A   F  
Sbjct: 424 QAVVVSNSLISMYAKCDNLQSA-EAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDG 482

Query: 343 VIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVEL-KGRVHLFM 401
           + +   +   +  +L          DG+   ++M+ E  ++ D   +YV L KG   L  
Sbjct: 483 MSEKNVIT--WNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPD-WVTYVTLFKGCADLGA 539

Query: 402 --VGDRNHHQTVEIYRMLD 418
             +GD+   +TV++  ++D
Sbjct: 540 NKLGDQIIGRTVKVGLIID 558



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 113/272 (41%), Gaps = 34/272 (12%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG-V 144
           N ++  Y K G +    +LF ++P + + +WN ++SGY Q+      LE +  M   G  
Sbjct: 95  NVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDS 154

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG------- 197
            P+A T    + SC  LG HS+ L++   +Q      +  +  AL++M+ RCG       
Sbjct: 155 WPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASR 214

Query: 198 ------------------------NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVA 233
                                    +  A  +FD MP + VVSW  ++      G    A
Sbjct: 215 LFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREA 274

Query: 234 VQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293
           + +  +M   G+R D T + S L+AC+       G +  +    +      P   + +V+
Sbjct: 275 LDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWG-KQLHAQVIRNLPHIDPYVASALVE 333

Query: 294 LLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           L  ++G   EA  +  S L + +   W  L+ 
Sbjct: 334 LYAKSGCFKEAKGVFNS-LHDRNNVAWTVLIS 364



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 2/128 (1%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           N   +N ++N YA+ G L  A  +F  MP + V SW  ++ GY       V+++ F  M 
Sbjct: 90  NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 149

Query: 242 KSGIR-PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           +SG   P+       + +C   G     L+    M  K+  Q   E    +VD+  R G 
Sbjct: 150 RSGDSWPNAFTLACAMKSCGALGWHSLALQ-LLAMVQKFDSQDDSEVAAALVDMFVRCGA 208

Query: 301 LNEALELI 308
           ++ A  L 
Sbjct: 209 VDLASRLF 216


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/512 (40%), Positives = 316/512 (61%), Gaps = 10/512 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N++I  Y LN     A+SLF +MR   ++ + +T++ L  I    G +         
Sbjct: 314 ISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGF 373

Query: 73  CVKFGLDL-DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
            ++ G  L D ++GN ++ MY K G VD  R +F+ +P   +I+WN +ISGYAQNG A+ 
Sbjct: 374 TLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASE 433

Query: 132 VLELYREMKSLG-VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
            +E+Y  M+  G +  +  T+V VL +C+  GA   G+++  ++  NG   + F+  +L 
Sbjct: 434 AIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLA 493

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MY +CG L+ A ++F  +PR   V W  +I  +G HGHGE AV LF EML  G++PD  
Sbjct: 494 DMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHI 553

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            FV++LSACSH+GL D+G   F  M+  YG+ P  +HY CMVD+ GRAGQL  AL+ I+S
Sbjct: 554 TFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKS 613

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M ++PD ++WGALL AC++H NV+L ++A   + ++EP + GY+VLLSN+Y+ A   +G+
Sbjct: 614 MSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGV 673

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLE------NLV 424
             +R +   + L+K PG+S +E+  +V +F  G++ H    E+YR L  L+        V
Sbjct: 674 DEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYV 733

Query: 425 QEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
            +H    +  + + +EH+     HSE+LAIAF +I T   T I + KNLR+CGDCH   K
Sbjct: 734 PDHRFVLQDVEDDEKEHI--LMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTK 791

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +SKI +R+ IVRD+ RFHHFK+G CSC DYW
Sbjct: 792 FISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 130/253 (51%), Gaps = 14/253 (5%)

Query: 15  YNALISGYVLNSLVSEAVSLFGK-MREQGVEINSVTMLCLLPIC---VDPGYLWLGMCCH 70
           +N +ISGY      SE +  F   M   G+  +  T   +L  C   +D      G   H
Sbjct: 120 WNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID------GNKIH 173

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
           C+ +KFG   D  V   L+ +Y +  +V   R LFD++P + + +WNAMISGY Q+G A 
Sbjct: 174 CLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAK 233

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             L L   ++++    D+VT V +LS+C   G  + G+ +      +G  S  F++N LI
Sbjct: 234 EALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLI 289

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           ++YA  G L+  + +FD M  + ++SW +II  Y ++     A+ LF EM  S I+PD  
Sbjct: 290 DLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCL 349

Query: 251 AFVSVLSACSHAG 263
             +S+ S  S  G
Sbjct: 350 TLISLASILSQLG 362



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 128/251 (50%), Gaps = 20/251 (7%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYRE-MKSLGVCP 146
           L+ +Y   G+V   R  FD +  + +  WN MISGY + G ++ V+  +   M S G+ P
Sbjct: 92  LVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTP 151

Query: 147 DAVTFVGVLSSCAHL----GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202
           D  TF  VL +C  +      H + L+        GF  + ++  +LI++Y+R   +  A
Sbjct: 152 DYRTFPSVLKACRTVIDGNKIHCLALKF-------GFMWDVYVAASLIHLYSRYKAVGNA 204

Query: 203 RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP-DGTAFVSVLSACSH 261
           R +FD MP + + SW A+I GY   G+ + A+      L +G+R  D    VS+LSAC+ 
Sbjct: 205 RILFDEMPVRDMGSWNAMISGYCQSGNAKEALT-----LSNGLRAMDSVTVVSLLSACTE 259

Query: 262 AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWG 321
           AG  ++G+   +    K+GL+        ++DL    G+L +  ++ + M V  D   W 
Sbjct: 260 AGDFNRGVT-IHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVR-DLISWN 317

Query: 322 ALLGACKIHKN 332
           +++ A ++++ 
Sbjct: 318 SIIKAYELNEQ 328



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 91/203 (44%), Gaps = 17/203 (8%)

Query: 168 LEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH 227
           L V +QIQ      N  ++  L+N+Y   GN+  AR  FD +  + V +W  +I GYG  
Sbjct: 77  LVVSKQIQ------NVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRA 130

Query: 228 GHGEVAVQLFDE-MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPE 286
           G+    ++ F   ML SG+ PD   F SVL AC      +K     + +  K+G      
Sbjct: 131 GNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNK----IHCLALKFGFMWDVY 186

Query: 287 HYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL-GACKIHKNVELAELAFGKVIK 345
               ++ L  R   +  A  L + M V   G+ W A++ G C+     E   L+ G    
Sbjct: 187 VAASLIHLYSRYKAVGNARILFDEMPVRDMGS-WNAMISGYCQSGNAKEALTLSNG---- 241

Query: 346 LEPMNTGYYVLLSNIYSEARNLD 368
           L  M++   V L +  +EA + +
Sbjct: 242 LRAMDSVTVVSLLSACTEAGDFN 264


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/490 (44%), Positives = 302/490 (61%), Gaps = 4/490 (0%)

Query: 31  AVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90
           ++  + +M    V  ++ T   ++  C D   L  G   H   +  G   D  V   LM+
Sbjct: 95  SLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMS 154

Query: 91  MYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVT 150
            Y KCG +   RK+FD++ ++ ++TWN+MISGY QNG A   + L+  MK +GV P++ T
Sbjct: 155 FYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSAT 214

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
           FV VLS+CAHLGA  +G  V +    NG   N  L  +LINMY RCGN+ KAR +FD M 
Sbjct: 215 FVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMK 274

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270
            + VV+WTA+I GYG +G+G  AV+LF EM ++G+ P+   FV+VLSAC+HAGL ++G  
Sbjct: 275 ERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRR 334

Query: 271 YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
            F  M+ +Y L P  EH+ C+VD+LGRAG L+EA   I+ +  EP  A+W A+LGACK+H
Sbjct: 335 VFESMREEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEEPAPAIWTAMLGACKMH 394

Query: 331 KNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSY 390
           KN  L        +  EP N  +YV+LSNIY+ A  +D +  VR  M  + LKK  GYS 
Sbjct: 395 KNFGLGAQVAEHRLASEPGNPAHYVILSNIYALAGRMDQVEMVRDNMIRKCLKKQVGYST 454

Query: 391 VELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTE---- 446
           ++L  + +LF +GD++H +T EIY  LD+L    +E      SD    E    + E    
Sbjct: 455 IDLDRKTYLFSMGDKSHTETNEIYHYLDQLMRKCREAGYVTVSDSVMHELEEEEREYALG 514

Query: 447 VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFK 506
            HSEKLAIAFG++ TS GT I ++KNLR+C DCH  IK +S I +R+ IVRD  RFHHFK
Sbjct: 515 YHSEKLAIAFGLLKTSRGTVIRIVKNLRMCEDCHSAIKYISVISNREIIVRDKLRFHHFK 574

Query: 507 SGFCSCKDYW 516
           +G CSC DYW
Sbjct: 575 NGSCSCLDYW 584



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 90/260 (34%), Positives = 141/260 (54%), Gaps = 8/260 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+    +   V +N++ISGY  N    EA+ LF +M+E GVE NS T + +L  C   
Sbjct: 168 VFDKMRDRS--VVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHL 225

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G   LG   H   V  GLDL+  +G  L+ MY +CG+V   R++FD + E+ ++ W AMI
Sbjct: 226 GAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMI 285

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGY  NG  +  +EL+ EM+  G+ P+++TFV VLS+CAH G  + G  V + ++   + 
Sbjct: 286 SGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMREE-YR 344

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLF 237
             P + +   L++M  R G L +A      +  +   + WTA++G   +H +  +  Q+ 
Sbjct: 345 LVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEEPAPAIWTAMLGACKMHKNFGLGAQVA 404

Query: 238 DEMLKSGIRPDGTAFVSVLS 257
           +  L S   P   A   +LS
Sbjct: 405 EHRLAS--EPGNPAHYVILS 422



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 128/240 (53%), Gaps = 5/240 (2%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ-NGLATHVLELYREMKSLGVCP 146
           L+ +    GS+ Y R++F  VP      + ++I   ++ +  + + L  Y  M    V P
Sbjct: 50  LLNLACAAGSISYTRQIFLIVPNPDSFLFTSLIRSTSKFHNFSVYSLYFYTRMVLSNVAP 109

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF 206
              TF  V+ SCA L A   G  +   +  NGFGS+ ++  AL++ Y +CG L  AR +F
Sbjct: 110 SNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKVF 169

Query: 207 DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD 266
           D M  ++VV+W ++I GY  +G  + A++LFD M + G+ P+   FVSVLSAC+H G   
Sbjct: 170 DKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFI 229

Query: 267 KG-LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
            G   + Y + N  GL       T ++++  R G +++A E+ +SM  E +   W A++ 
Sbjct: 230 LGCWVHEYAVGN--GLDLNVVLGTSLINMYTRCGNVSKAREVFDSM-KERNVVAWTAMIS 286



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/194 (20%), Positives = 85/194 (43%), Gaps = 7/194 (3%)

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYG-IH 227
           +V   +  +G+G + FL   L+N+    G++   R IF  +P      +T++I      H
Sbjct: 30  QVHAHVIVSGYGCSRFLLTKLLNLACAAGSISYTRQIFLIVPNPDSFLFTSLIRSTSKFH 89

Query: 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH-AGLTDKGLEYFYGMKNKYGLQPGPE 286
                ++  +  M+ S + P    F SV+ +C+    L    + + + + N +G     +
Sbjct: 90  NFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQ 149

Query: 287 HYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV--I 344
             T ++   G+ G L  A ++ + M  +     W +++   + +   + A   F ++  I
Sbjct: 150 --TALMSFYGKCGVLCNARKVFDKMR-DRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEI 206

Query: 345 KLEPMNTGYYVLLS 358
            +EP +  +  +LS
Sbjct: 207 GVEPNSATFVSVLS 220


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/543 (39%), Positives = 325/543 (59%), Gaps = 41/543 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++ISG+V      EA+ LF +M+ +    N VTM+ +L  C     L  G      
Sbjct: 198 VSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDY 257

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW---------------- 116
             + G+D++  + N ++ MYVKCGS++  R+LFD++ EK +++W                
Sbjct: 258 IERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAA 317

Query: 117 ---------------NAMISGYAQNGLATHVLELYREMK-SLGVCPDAVTFVGVLSSCAH 160
                          NA+IS Y QNG     L ++RE++ +    P+ VT    L++CA 
Sbjct: 318 RRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQ 377

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           LGA  +G  +   I+  G   N  +  +LI+MY++CG+L+KA  +F  + R+ V  W+A+
Sbjct: 378 LGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAM 437

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           I G  +HGHG  A+ LF +M ++ ++P+   F ++L ACSH+GL D+G  +F  M+  YG
Sbjct: 438 IAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYG 497

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           + PG +HY CMVD+LGRAG L EA+ELIE M + P  +VWGALLGAC+I+ NVELAE+A 
Sbjct: 498 VVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMAC 557

Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400
            ++++ +  N G YVLLSNIY++A   D + R+R  M+   L+K+PG S +E+ G +H F
Sbjct: 558 SRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEF 617

Query: 401 MVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKN-----SEEHLND--TEVHSEKLA 453
           +VGD +H  + EIY  LD++   ++       SD+ +      EE++ +    +HSEKLA
Sbjct: 618 LVGDNSHPLSTEIYSKLDEIVARIKSTGYV--SDESHLLQFVEEEYMKEHALNLHSEKLA 675

Query: 454 IAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCK 513
           IA+G+I   P   I ++KNLR+CGDCH   KL+SK+ +R  ++RD  RFHHF  G CSC 
Sbjct: 676 IAYGLIRMEPSQPIRIVKNLRVCGDCHSVAKLISKLYNRDILLRDRYRFHHFSGGNCSCM 735

Query: 514 DYW 516
           DYW
Sbjct: 736 DYW 738



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 178/392 (45%), Gaps = 39/392 (9%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEI-NSVTMLCLLPICVD 59
           VFD+  +    T  +N LI  +  +    + + +F +M  +     NS T   ++    +
Sbjct: 86  VFDQIPRPNLYT--WNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATE 143

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              L  G   H + +K     D  + N L+  Y   G +D    +F ++ EK +++WN+M
Sbjct: 144 VSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSM 203

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           ISG+ Q G     L+L++ MK     P+ VT VGVLS+CA       G      I+ NG 
Sbjct: 204 ISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGI 263

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             N  L+NA+++MY +CG+L+ AR +FD M  K +VSWT +I GY   G  + A ++FD 
Sbjct: 264 DINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDV 323

Query: 240 MLKSGI--------------------------------RPDGTAFVSVLSACSHAGLTDK 267
           M +  I                                +P+     S L+AC+  G  D 
Sbjct: 324 MPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDL 383

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           G  + +    K G++      T ++D+  + G L +ALE+  S +   D  VW A++   
Sbjct: 384 G-GWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYS-VERRDVFVWSAMIAGL 441

Query: 328 KIHKNVELAELAFGKV--IKLEPMNTGYYVLL 357
            +H +   A   F K+   K++P    +  LL
Sbjct: 442 AMHGHGRAAIDLFSKMQETKVKPNAVTFTNLL 473



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 154/351 (43%), Gaps = 14/351 (3%)

Query: 46  NSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTM--YVKCGSVDYGRK 103
           N  T+  L+  C +  +L      H   ++ GL  D      L T        S+DY  K
Sbjct: 29  NPSTVPILIDKCANKKHL---KQLHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYACK 85

Query: 104 LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM-KSLGVCPDAVTFVGVLSSCAHLG 162
           +FDQ+P   L TWN +I  +A +      L ++ +M       P++ TF  V+ +   + 
Sbjct: 86  VFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVS 145

Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIG 222
           +   G  +   +    FGS+ F++N+LI+ Y+  G+L  A  +F  +  K +VSW ++I 
Sbjct: 146 SLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMIS 205

Query: 223 GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQ 282
           G+   G  E A+QLF  M     RP+    V VLSAC+     + G  +      + G+ 
Sbjct: 206 GFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFG-RWACDYIERNGID 264

Query: 283 PGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGK 342
                   M+D+  + G L +A  L + M  E D   W  ++       + + A   F  
Sbjct: 265 INLILSNAMLDMYVKCGSLEDARRLFDKM-EEKDIVSWTTMIDGYAKVGDYDAARRVF-D 322

Query: 343 VIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVEL 393
           V+  E + T +  L+S+     +  + +     + RE +L K+   + V L
Sbjct: 323 VMPREDI-TAWNALISSYQQNGKPKEAL----AIFRELQLNKNTKPNEVTL 368


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/519 (41%), Positives = 321/519 (61%), Gaps = 11/519 (2%)

Query: 4    ESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL 63
            E+IK   + + +N LIS +  N    EA+ LF +M+ QG+  +S ++   L  C    + 
Sbjct: 559  ETIKEKTI-LSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFS 617

Query: 64   WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGY 123
             LG   H   +K G   DF V N L+ MY KCG V    K+F+++ EK L+TWN+MI G+
Sbjct: 618  QLGAQIHGYIIKTGNFNDF-VQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGF 676

Query: 124  AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP 183
            +QNG +   + L+ +M    V  D +TF+ V+ +C+HLG    G  V  ++   G   + 
Sbjct: 677  SQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDS 736

Query: 184  FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
            +L+ AL +MY++CG L+ A  +FD M  +++VSW+ +I GYG+HG     + LF++ML S
Sbjct: 737  YLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGS 796

Query: 244  GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
            GI+P+   F+ +LSACSHAG  ++G  YF  M +++G++P  +H+ CMVDLL RAG LN 
Sbjct: 797  GIKPNDITFMHILSACSHAGAVEEGKLYFNSM-SEFGVEPKHDHFACMVDLLSRAGDLNG 855

Query: 304  ALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE 363
            A ++I S+    + ++WGALL  C+IHK +++ +     ++ ++  +TGYY LLSNIY+E
Sbjct: 856  AYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAE 915

Query: 364  ARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENL 423
                D   +VR MM+ + L+K PGYS +E+  +++ F  GD +H QT +IYR L+   +L
Sbjct: 916  EGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENFRSL 975

Query: 424  VQ------EHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICG 477
            V       E D +     K ++E  N+   HSEKLAIAFGIINT PGT + + KNLR+C 
Sbjct: 976  VHAQVYDSEPDNSIVGTSKFNKE--NNVVSHSEKLAIAFGIINTRPGTTLRISKNLRVCR 1033

Query: 478  DCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DCH F K+ SKI  R+ I+RD  RFH F++G CSC DYW
Sbjct: 1034 DCHSFAKIASKITGREIIMRDLNRFHCFRNGSCSCNDYW 1072



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 110/395 (27%), Positives = 195/395 (49%), Gaps = 50/395 (12%)

Query: 25  NSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM--------CCHCICVKF 76
           N   SE + +F +M  + VE +SVTML +   C + G L LG           H   ++ 
Sbjct: 469 NGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRR 528

Query: 77  GLD--LDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
            +D  LDF +G  LM +Y   G++    K+F+ + EK +++WN +IS + +NG     L 
Sbjct: 529 AMDPELDF-LGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALL 587

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+ +M++ G+ PD+ +    LS+C  +    +G ++   I   G   N F+ NALI+MYA
Sbjct: 588 LFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTG-NFNDFVQNALIDMYA 646

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG +  A  +F+ +  K++V+W ++I G+  +G+   A+ LFD+M  + ++ D   F+S
Sbjct: 647 KCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLS 706

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL-------------------- 294
           V+ ACSH G  +KG ++ +     YGL+      T + D+                    
Sbjct: 707 VIQACSHLGYLEKG-KWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSER 765

Query: 295 -----------LGRAGQLNEALELIESML---VEPDGAVWGALLGACKIHKNVELAELAF 340
                       G  GQ+N  + L   ML   ++P+   +  +L AC     VE  +L F
Sbjct: 766 SIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYF 825

Query: 341 GKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRV 373
             + +  +EP +  ++  + ++ S A +L+G  ++
Sbjct: 826 NSMSEFGVEPKHD-HFACMVDLLSRAGDLNGAYQI 859



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 110/220 (50%), Gaps = 20/220 (9%)

Query: 125 QNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGL--EVEQQIQANGF--- 179
           +NG A+  L+++ +M S  V PD+VT + V  +C+ LG+  +G    V++    +GF   
Sbjct: 468 KNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIR 527

Query: 180 -GSNP---FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQ 235
              +P   FL  AL+ +YA  GNL+    +F+ +  KT++SW  +I  +  +G  E A+ 
Sbjct: 528 RAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALL 587

Query: 236 LFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH---YTCMV 292
           LF +M   G+ PD  +  S LSAC     +  G +      + Y ++ G  +      ++
Sbjct: 588 LFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQI-----HGYIIKTGNFNDFVQNALI 642

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKN 332
           D+  + G ++ A ++ E  + E     W +++  C   +N
Sbjct: 643 DMYAKCGFVHSANKMFEK-IKEKSLVTWNSMI--CGFSQN 679



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 70/175 (40%), Gaps = 36/175 (20%)

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
            G   +P  +  LI  YA+ G  + ++ +FD  P+     W  +I  Y   G  E AV L
Sbjct: 374 TGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSL 433

Query: 237 FDEML-KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295
           + EM+ +   +     F SVL ACS  G    G                           
Sbjct: 434 YHEMVYQDQTQISNFVFPSVLKACSGFGDLSVG--------------------------- 466

Query: 296 GRAGQLNEALELIESML---VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE 347
           G+ GQ +E L++   M+   VEPD     ++  AC      EL  L  G++ +++
Sbjct: 467 GKNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACS-----ELGSLRLGRLGRVK 516


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/536 (41%), Positives = 318/536 (59%), Gaps = 39/536 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  LISG++     +E+V LF +MR + + ++   +  L+  C     L LG   H +
Sbjct: 337 VAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSL 396

Query: 73  CVKFGLDLDFSVGNCLMTMYVKC-------------------------------GSVDYG 101
           C+K G      V N L++MY KC                               G+V   
Sbjct: 397 CLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKA 456

Query: 102 RKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG-VCPDAVTFVGVLSSCAH 160
           R+ FD + EK +ITWNAM+  Y Q+G     L +Y+ M S   V PD VT+V +   CA 
Sbjct: 457 REFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCAD 516

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           LGA+ +G ++  +    G   +  + NA+I MY++CG + +AR +FD +  K +VSW A+
Sbjct: 517 LGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAM 576

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           I GY  HG G+ A+++FD++LK G +PD  ++V+VLS CSH+GL  +G  YF  MK  + 
Sbjct: 577 ITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHN 636

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           + PG EH++CMVDLLGRAG L EA +LI+ M ++P   VWGALL ACKIH N ELAELA 
Sbjct: 637 ISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAA 696

Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400
             V +L+  ++G Y+L++ IY++A   D   ++R +MR++ +KK+PGYS++E+  +VH+F
Sbjct: 697 KHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVF 756

Query: 401 MVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIIN 460
              D +H Q + I + LD+L   +    G  R+D   SE H      HSEKLA+AFG++ 
Sbjct: 757 KADDVSHPQVLAIRKKLDELMEKIARL-GYVRTDSTRSEIH------HSEKLAVAFGLMT 809

Query: 461 TSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
                 I +MKNLRICGDCH  IKL+S +  R+F++RDA RFHHF  G CSC DYW
Sbjct: 810 LPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/445 (23%), Positives = 189/445 (42%), Gaps = 47/445 (10%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N ++S    +  V EA+ +   M+ +GV ++S T    L  C     L  G   H  
Sbjct: 236 VSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQ 295

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++    +D  V + L+ +Y K G     + +F+ + ++  + W  +ISG+ Q G  T  
Sbjct: 296 VIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTES 355

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           +EL+ +M++  +  D      ++S C       +G ++      +G      ++N+LI+M
Sbjct: 356 VELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISM 415

Query: 193 YARC-------------------------------GNLKKARAIFDGMPRKTVVSWTAII 221
           YA+C                               GN+ KAR  FDGM  K V++W A++
Sbjct: 416 YAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAML 475

Query: 222 GGYGIHGHGEVAVQLFDEMLKSG-IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           G Y  HG  E  ++++  ML    +RPD   +V++   C+  G    G +   G   K G
Sbjct: 476 GAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLG-DQIIGRTVKVG 534

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           L         ++ +  + G++ EA ++ + + V+ D   W A++     H   + A   F
Sbjct: 535 LIIDTSVANAVITMYSKCGRILEARKVFDFLNVK-DIVSWNAMITGYSQHGMGKQAIEIF 593

Query: 341 GKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSY----VELK 394
             ++K   +P    Y  +LS         +G     MM R   +   PG  +    V+L 
Sbjct: 594 DDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNIS--PGLEHFSCMVDLL 651

Query: 395 GRV-HLF----MVGDRNHHQTVEIY 414
           GR  HL     ++ D     T E++
Sbjct: 652 GRAGHLTEAKDLIDDMPMKPTAEVW 676



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 106/439 (24%), Positives = 195/439 (44%), Gaps = 40/439 (9%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEI-NSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +N L+SGY  +     ++  F  M   G    N+ T+ C +  C   G+  L +    + 
Sbjct: 105 WNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMV 164

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLF---------------------------- 105
            KF    D  V   L+ M+V+CG+VD   +LF                            
Sbjct: 165 QKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHAL 224

Query: 106 ---DQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162
              D +PE+ +++WN M+S  +Q+G     L++  +M+S GV  D+ T+   L++CA L 
Sbjct: 225 ELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLS 284

Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIG 222
           +   G ++  Q+  N    +P++ +AL+ +YA+ G  K+A+ +F+ +  +  V+WT +I 
Sbjct: 285 SLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLIS 344

Query: 223 GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQ 282
           G+  +G    +V+LF++M    +  D  A  +++S C        G +  + +  K G  
Sbjct: 345 GFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQ-LHSLCLKSGQI 403

Query: 283 PGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGK 342
                   ++ +  +   L  A E I   + E D   W +++ A     NV  A   F  
Sbjct: 404 QAVVVSNSLISMYAKCDNLQSA-EAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDG 462

Query: 343 VIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVEL-KGRVHLFM 401
           +   E     +  +L          DG+   ++M+ E  ++ D   +YV L KG   L  
Sbjct: 463 MS--EKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPD-WVTYVTLFKGCADLGA 519

Query: 402 --VGDRNHHQTVEIYRMLD 418
             +GD+   +TV++  ++D
Sbjct: 520 NKLGDQIIGRTVKVGLIID 538



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 113/272 (41%), Gaps = 34/272 (12%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG-V 144
           N ++  Y K G +    +LF ++P + + +WN ++SGY Q+      LE +  M   G  
Sbjct: 75  NVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDS 134

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG------- 197
            P+A T    + SC  LG HS+ L++   +Q      +  +  AL++M+ RCG       
Sbjct: 135 WPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASR 194

Query: 198 ------------------------NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVA 233
                                    +  A  +FD MP + VVSW  ++      G    A
Sbjct: 195 LFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREA 254

Query: 234 VQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293
           + +  +M   G+R D T + S L+AC+       G +  +    +      P   + +V+
Sbjct: 255 LDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWG-KQLHAQVIRNLPHIDPYVASALVE 313

Query: 294 LLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           L  ++G   EA  +  S L + +   W  L+ 
Sbjct: 314 LYAKSGCFKEAKGVFNS-LHDRNNVAWTVLIS 344



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 2/128 (1%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           N   +N ++N YA+ G L  A  +F  MP + V SW  ++ GY       V+++ F  M 
Sbjct: 70  NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 129

Query: 242 KSGIR-PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           +SG   P+       + +C   G     L+    M  K+  Q   E    +VD+  R G 
Sbjct: 130 RSGDSWPNAFTLACAMKSCGALGWHSLALQ-LLAMVQKFDSQDDSEVAAALVDMFVRCGA 188

Query: 301 LNEALELI 308
           ++ A  L 
Sbjct: 189 VDLASRLF 196


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/510 (41%), Positives = 317/510 (62%), Gaps = 6/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N+L++ +  N     A+ ++ KM   GV  + +T++ L  +  + G        H  
Sbjct: 307 VSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGF 366

Query: 73  CVKFGLDL-DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +    L D ++GN ++ MY K G +D  RK+F+ +P K +I+WN++I+GY+QNGLA  
Sbjct: 367 VTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANE 426

Query: 132 VLELYREMKSL-GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
            +++Y  M+   G  P+  T+V +L++ + LGA   G++   Q+  N    + F++  L+
Sbjct: 427 AIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLV 486

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MY +CG L  A ++F  +P ++ VSW AII  +G+HG+G  AV+LF EM   G++PD  
Sbjct: 487 DMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHI 546

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            FVS+LSACSH+GL D+G   F  M+  YG++P  +HY CMVDL GRAG L +A   +++
Sbjct: 547 TFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKN 606

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M V PD +VWGALLGAC+IH+NVEL       ++K+E  N GYYVLLSNIY++  + +G+
Sbjct: 607 MPVRPDVSVWGALLGACRIHENVELVRTVSDHLLKVESENVGYYVLLSNIYAKLGHWEGV 666

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD----KLENLVQE 426
             VR + R+R LKK PG+S +E+  ++ +F  G++ H +  EIY  L     K++++   
Sbjct: 667 DEVRSLARDRGLKKTPGWSSIEVDKKIDVFYTGNQTHPKCEEIYSELRNLTAKMKSIGYV 726

Query: 427 HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
            D          +E  N    HSE+LA+AFGII+T P T + + KNLR+CGDCH   K +
Sbjct: 727 PDYNFVLQDVEDDEKENILTSHSERLAMAFGIISTPPKTTLQIFKNLRVCGDCHNATKFI 786

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SKI +R+ IVRD+ RFHHFK G CSC DYW
Sbjct: 787 SKITEREIIVRDSNRFHHFKDGVCSCGDYW 816



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 106/318 (33%), Positives = 174/318 (54%), Gaps = 4/318 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NA+ISG+ LN  V+EA+ +F +MR + V ++SVT+  LLPICV    +  G+  H   +
Sbjct: 208 WNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAI 267

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K GL+ D  V N L+ MY K G +     +F+Q+  + +++WN++++ + QN      L 
Sbjct: 268 KLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALG 327

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN-GFGSNPFLNNALINMY 193
           +Y +M S+GV PD +T V + S  A LG       +   +     F  +  L NA+I+MY
Sbjct: 328 VYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMY 387

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM-LKSGIRPDGTAF 252
           A+ G +  AR +F+G+P K V+SW ++I GY  +G    A+ ++  M   SG  P+   +
Sbjct: 388 AKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTW 447

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           VS+L+A S  G   +G++  +G   K  L       TC+VD+ G+ G+L +AL L    +
Sbjct: 448 VSILTAHSQLGALKQGMKA-HGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYE-V 505

Query: 313 VEPDGAVWGALLGACKIH 330
                  W A++    +H
Sbjct: 506 PHQSSVSWNAIISCHGLH 523



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 150/315 (47%), Gaps = 13/315 (4%)

Query: 15  YNALISGYVLNSLVSEAVSLFGK-MREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +N++IS Y        AV  F + +    ++ +  T   ++  C   G L  G   HC+ 
Sbjct: 109 WNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRAC---GNLDDGRKVHCLV 165

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           +K G + D  +    +  Y + G V     LFD +  + + TWNAMISG+  NG     L
Sbjct: 166 LKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEAL 225

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
           E++ EM+   V  D+VT   +L  C  L     G+ +       G   + F+ NALINMY
Sbjct: 226 EVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMY 285

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
           A+ G L+ A  IF+ M  + +VSW +++  +  +    +A+ ++++M   G+ PD    V
Sbjct: 286 AKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLV 345

Query: 254 SVLSACSHAG--LTDKGLEYFYGMKNKY--GLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
           S+ S  +  G  L+ + +  F   +  +   +  G      ++D+  + G ++ A ++ E
Sbjct: 346 SLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALG----NAIIDMYAKLGFIDSARKVFE 401

Query: 310 SMLVEPDGAVWGALL 324
            + V+ D   W +L+
Sbjct: 402 GLPVK-DVISWNSLI 415



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 123/261 (47%), Gaps = 14/261 (5%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC-P 146
           L+  Y   G + + R  FDQ+  K + TWN+MIS YA+ G     ++ + E  S      
Sbjct: 81  LINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQS 140

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF 206
           D  TF  V+ +C +L     G +V   +   GF  + ++  + I+ Y+R G +  A  +F
Sbjct: 141 DHYTFPPVIRACGNLDD---GRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLF 197

Query: 207 DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD 266
           D M  + + +W A+I G+ ++G    A+++FDEM    +  D     S+L  C       
Sbjct: 198 DNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDII 257

Query: 267 KGLEYFYGMKNKYGLQPGPEH--YTC--MVDLLGRAGQLNEALELIESMLVEPDGAVWGA 322
            G+     + + Y ++ G E   + C  ++++  + G+L  A  +   M V  D   W +
Sbjct: 258 SGV-----LIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVR-DIVSWNS 311

Query: 323 LLGACKIHKNVELAELAFGKV 343
           LL A + +K   +A   + K+
Sbjct: 312 LLAAFEQNKKPVIALGVYNKM 332



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 6/168 (3%)

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
           +G   + FL+  LIN YA  G++  AR  FD +  K V +W ++I  Y   GH   AV  
Sbjct: 69  SGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDC 128

Query: 237 FDEMLKSG-IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295
           F+E L +  ++ D   F  V+ AC   G  D G +  + +  K G +         +   
Sbjct: 129 FNEFLSTSFLQSDHYTFPPVIRAC---GNLDDGRK-VHCLVLKLGFECDVYIAASFIHFY 184

Query: 296 GRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
            R G ++ A  L ++M++  D   W A++    ++  V  A   F ++
Sbjct: 185 SRFGFVSLACNLFDNMMIR-DIGTWNAMISGFYLNGKVAEALEVFDEM 231



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 57/111 (51%), Gaps = 2/111 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V +NA+IS + L+    +AV LF +M+ +GV+ + +T + LL  C   G +  G  C  
Sbjct: 510 SVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQ 569

Query: 72  ICVK-FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT-WNAMI 120
           +  + +G+        C++ ++ + G ++        +P +  ++ W A++
Sbjct: 570 LMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALL 620


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 205/511 (40%), Positives = 306/511 (59%), Gaps = 10/511 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N+LI G V      +A+S F KMR + ++I+  T+  +L        +   +  HC+
Sbjct: 7   VSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVHCL 66

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G +    V N L+ MY K G +D    +F ++ +K +++W ++++GY+ NG     
Sbjct: 67  IIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEA 126

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           ++L+ +M+  GV PD +    VLS+CA L     G ++   +  +G  S+  ++N+L+ M
Sbjct: 127 IKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTM 186

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG++  A   FD MP + V+SWTA+I GY  +G G+ ++Q +D+M+ +G +PD   F
Sbjct: 187 YAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITF 246

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + +L ACSH GL   G  YF  M   YG++PGPEHY CM+DLLGR+G+L EA  L+  M+
Sbjct: 247 IGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMV 306

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           V PD  VW ALL AC++HK +EL E+A   + +LEPMN+  YV+LSN+YS A   +   R
Sbjct: 307 VAPDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKWEDAAR 366

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           +R +MR R + K+PGYS++E   +V  FM  DRNH    EIY  +D++  L++E      
Sbjct: 367 IRRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEIIMLIKE---AGY 423

Query: 433 SDQKNSEEHLNDTEV-------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
               +   H  D EV       HSEKLA+AFG++    G  I + KNLR+CGDCH  +K 
Sbjct: 424 VPDMSFALHDTDDEVKELGLAYHSEKLAVAFGLLTVPQGAPIRIFKNLRVCGDCHTAMKY 483

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            SK+  R  I+RD+  FHHF  G CSC DYW
Sbjct: 484 TSKVYARHIILRDSNCFHHFTEGRCSCGDYW 514


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/537 (41%), Positives = 315/537 (58%), Gaps = 39/537 (7%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V +  LI G +     S++V LF +MR + + I+   +  L+  C +   L LG   H 
Sbjct: 336 SVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHS 395

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVD-------------------------------Y 100
           +C+K G +    V N L+++Y KCG +                                 
Sbjct: 396 LCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIK 455

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL-GVCPDAVTFVGVLSSCA 159
            R+ FD +  +  ITWNAM+  Y Q+G     L++Y  M S   V PD VT+V +   CA
Sbjct: 456 AREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCA 515

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
            +GA+ +G ++       G   N  + NA I MY++CG + +A+ +FD +  K VVSW A
Sbjct: 516 DIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNA 575

Query: 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279
           +I GY  HG G+ A + FD+ML  G +PD  ++V+VLS CSH+GL  +G  YF  M   +
Sbjct: 576 MITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVH 635

Query: 280 GLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELA 339
           G+ PG EH++CMVDLLGRAG L EA +LI+ M ++P   VWGALL ACKIH N ELAELA
Sbjct: 636 GISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELA 695

Query: 340 FGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHL 399
              V +L+  ++G Y+LL+ IYS+A   D   +VR +MR++ +KK+PGYS++E++ +VH+
Sbjct: 696 AKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHV 755

Query: 400 FMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGII 459
           F   D +H Q + I   LD+L   +  H G  R++   SE H      HSEKLA+AFGI+
Sbjct: 756 FKADDVSHPQVIAIRNKLDELMEKI-AHLGYVRTESPRSEIH------HSEKLAVAFGIM 808

Query: 460 NTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +      I +MKNLRICGDCH  IKL+S + DR+F++RD  RFHHFKSG CSC DYW
Sbjct: 809 SLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/431 (23%), Positives = 184/431 (42%), Gaps = 43/431 (9%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +I+    +  V EA+ L  +M  +GV ++S T    L  C     L  G   H  
Sbjct: 236 VSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAK 295

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++    +D  V + L+ +Y KCGS    +++F+ + ++  ++W  +I G  Q    +  
Sbjct: 296 VIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKS 355

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           +EL+ +M++  +  D      ++S C +     +G ++      +G      ++N+LI++
Sbjct: 356 VELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISL 415

Query: 193 YARCGNLK-------------------------------KARAIFDGMPRKTVVSWTAII 221
           YA+CG+L+                               KAR  FDGM  +  ++W A++
Sbjct: 416 YAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAML 475

Query: 222 GGYGIHGHGEVAVQLFDEML-KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           G Y  HG  E  ++++  ML +  + PD   +V++   C+  G    G +   G   K G
Sbjct: 476 GAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLG-DQIIGHTVKAG 534

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           L          + +  + G+++EA +L + +L   D   W A++     H   + A   F
Sbjct: 535 LILNVSVANAAITMYSKCGRISEAQKLFD-LLNGKDVVSWNAMITGYSQHGMGKQAAKTF 593

Query: 341 GKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSY----VELK 394
             ++    +P    Y  +LS         +G +   MM R   +   PG  +    V+L 
Sbjct: 594 DDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGIS--PGLEHFSCMVDLL 651

Query: 395 GRV-HLFMVGD 404
           GR  HL    D
Sbjct: 652 GRAGHLTEAKD 662



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 154/344 (44%), Gaps = 34/344 (9%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEI-NSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +N L+SGY       + +  F  M   G  + N+ T  C++  C   G   L      + 
Sbjct: 105 WNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLF 164

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV------------------------- 108
            KF    D  V   L+ M+V+CG VD+  +LF Q+                         
Sbjct: 165 WKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAI 224

Query: 109 ------PEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162
                  E+ +++WN MI+  +Q+G     L L  EM   GV  D+ T+   L++CA L 
Sbjct: 225 EYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLF 284

Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIG 222
           +   G ++  ++  +    +P++ +ALI +YA+CG+ K+A+ +F+ +  +  VSWT +IG
Sbjct: 285 SLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIG 344

Query: 223 GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQ 282
           G   +     +V+LF++M    +  D  A  +++S C +      G +  + +  K G  
Sbjct: 345 GSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQ-LHSLCLKSGHN 403

Query: 283 PGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
                   ++ L  + G L  A E + S + E D   W +++ A
Sbjct: 404 RAIVVSNSLISLYAKCGDLQNA-EFVFSSMSERDIVSWTSMITA 446



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 119/276 (43%), Gaps = 42/276 (15%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ-----NGLATHVLELYREMK 140
           N +M  Y K GS+    +LFD++P + + +WN ++SGY Q     +GL T V  ++R   
Sbjct: 75  NIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFV-SMHRSGD 133

Query: 141 SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
           SL   P+A TF  V+ SC  LG   +  ++        F  +P +  AL++M+ RCG + 
Sbjct: 134 SL---PNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVD 190

Query: 201 KARAIFDGMPRKT-------------------------------VVSWTAIIGGYGIHGH 229
            A  +F  + R T                               VVSW  +I      G 
Sbjct: 191 FASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGR 250

Query: 230 GEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYT 289
              A+ L  EM + G+R D T + S L+AC+       G +  +    +   Q  P   +
Sbjct: 251 VREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQ-LHAKVIRSLPQIDPYVAS 309

Query: 290 CMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
            +++L  + G   EA  +  S L + +   W  L+G
Sbjct: 310 ALIELYAKCGSFKEAKRVFNS-LQDRNSVSWTVLIG 344



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 2/144 (1%)

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
           +  + ++A+    N   +N ++N YA+ G+L  A  +FD MPR+ V SW  ++ GY    
Sbjct: 57  DARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQAR 116

Query: 229 HGEVAVQLFDEMLKSGIR-PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH 287
                ++ F  M +SG   P+   F  V+ +C   G  +   +   G+  K+     P+ 
Sbjct: 117 RFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQ-LLGLFWKFDFWGDPDV 175

Query: 288 YTCMVDLLGRAGQLNEALELIESM 311
            T +VD+  R G ++ A  L   +
Sbjct: 176 ETALVDMFVRCGYVDFASRLFSQI 199


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/510 (42%), Positives = 316/510 (61%), Gaps = 6/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +I+G   N +  EA+++  +M ++ +  +S T+  +LPI  +   +  G   H  
Sbjct: 165 VSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEIHGY 224

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ G D D  +G+ L+ MY KC  V+     F  +  +  I+WN++I+G  QNG     
Sbjct: 225 AIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQG 284

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L  +R M    V P  V+F  V+ +CAHL A ++G ++   I   GF  N F+ ++L++M
Sbjct: 285 LGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDM 344

Query: 193 YARCGNLKKARAIFDG--MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           YA+CGN+K AR IF+   M  + +VSWTAII G  +HGH   AV LF+EML  G++P   
Sbjct: 345 YAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYV 404

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
           AF++VL+ACSHAGL D+G +YF  M+  +G+ PG EHY  + DLLGRAG+L EA + I +
Sbjct: 405 AFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISN 464

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M  EP G+VW  LL AC+ HKN+ELAE    K++ ++P N G +V++SNIYS A+     
Sbjct: 465 MGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRDA 524

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHD-- 428
            ++R+ MR+  LKK P  S++E+  +VH F+ GD++H    +I   L+ L   +++    
Sbjct: 525 AKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYYDKINEALNILLEQMEKEGYV 584

Query: 429 -GTKRSDQKNSEEHLND-TEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
             T        EEH  D    HSE+LAIAFGII+T+ GT I V+KN+R+C DCH  IK +
Sbjct: 585 LDTNEVLHDVDEEHKRDLLRTHSERLAIAFGIISTTSGTTIRVIKNIRVCVDCHTAIKFM 644

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +KIV R+ IVRD +RFHHFK+G CSC DYW
Sbjct: 645 AKIVGREIIVRDNSRFHHFKNGSCSCGDYW 674



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 155/350 (44%), Gaps = 24/350 (6%)

Query: 4   ESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL 63
           ++ K+T  ++ +  +I  Y  + L+  +++ F  +R  G+  +      LL       + 
Sbjct: 33  KTTKATPHSLAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHF 92

Query: 64  WLGMCCHCICVKFGLDLDFSVGNCLMTMYVK----------------------CGSVDYG 101
            L    H   ++ G   D    N LM MY K                         +D  
Sbjct: 93  NLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSV 152

Query: 102 RKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL 161
           RKLFD++P + +++WN +I+G AQNG+    L + +EM    + PD+ T   +L      
Sbjct: 153 RKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEH 212

Query: 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
              + G E+      +GF  + F+ ++LI+MYA+C  ++ +   F  +  +  +SW +II
Sbjct: 213 ANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSII 272

Query: 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281
            G   +G  +  +  F  MLK  ++P   +F SV+ AC+H    + G +  +    + G 
Sbjct: 273 AGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQ-LHAYIIRLGF 331

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESM-LVEPDGAVWGALLGACKIH 330
                  + ++D+  + G +  A  +   + + + D   W A++  C +H
Sbjct: 332 DDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMH 381


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/519 (41%), Positives = 321/519 (61%), Gaps = 11/519 (2%)

Query: 4   ESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL 63
           E+IK   + + +N LIS +  N    EA+ LF +M+ QG+  +S ++   L  C    + 
Sbjct: 362 ETIKEKTI-LSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFS 420

Query: 64  WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGY 123
            LG   H   +K G   DF V N L+ MY KCG V    K+F+++ EK L+TWN+MI G+
Sbjct: 421 QLGAQIHGYIIKTGNFNDF-VQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGF 479

Query: 124 AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP 183
           +QNG +   + L+ +M    V  D +TF+ V+ +C+HLG    G  V  ++   G   + 
Sbjct: 480 SQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDS 539

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
           +L+ AL +MY++CG L+ A  +FD M  +++VSW+ +I GYG+HG     + LF++ML S
Sbjct: 540 YLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGS 599

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
           GI+P+   F+ +LSACSHAG  ++G  YF  M +++G++P  +H+ CMVDLL RAG LN 
Sbjct: 600 GIKPNDITFMHILSACSHAGAVEEGKLYFNSM-SEFGVEPKHDHFACMVDLLSRAGDLNG 658

Query: 304 ALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE 363
           A ++I S+    + ++WGALL  C+IHK +++ +     ++ ++  +TGYY LLSNIY+E
Sbjct: 659 AYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAE 718

Query: 364 ARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENL 423
               D   +VR MM+ + L+K PGYS +E+  +++ F  GD +H QT +IYR L+   +L
Sbjct: 719 EGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENFRSL 778

Query: 424 VQ------EHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICG 477
           V       E D +     K ++E  N+   HSEKLAIAFGIINT PGT + + KNLR+C 
Sbjct: 779 VHAQVYDSEPDNSIVGTSKFNKE--NNVVSHSEKLAIAFGIINTRPGTTLRISKNLRVCR 836

Query: 478 DCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           DCH F K+ SKI  R+ I+RD  RFH F++G CSC DYW
Sbjct: 837 DCHSFAKIASKITGREIIMRDLNRFHCFRNGSCSCNDYW 875



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 187/352 (53%), Gaps = 8/352 (2%)

Query: 11  LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
           +T  +  +IS Y  +    EA+++F KM+E  +E N VTM+ +L  C   G +  G   H
Sbjct: 266 MTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVH 325

Query: 71  CICVKFGLD--LDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
              ++  +D  LDF +G  LM +Y   G++    K+F+ + EK +++WN +IS + +NG 
Sbjct: 326 GFVIRRAMDPELDF-LGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQ 384

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
               L L+ +M++ G+ PD+ +    LS+C  +    +G ++   I   G   N F+ NA
Sbjct: 385 PEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTG-NFNDFVQNA 443

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           LI+MYA+CG +  A  +F+ +  K++V+W ++I G+  +G+   A+ LFD+M  + ++ D
Sbjct: 444 LIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMD 503

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
              F+SV+ ACSH G  +KG ++ +     YGL+      T + D+  + G+L  A  + 
Sbjct: 504 KLTFLSVIQACSHLGYLEKG-KWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVF 562

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI--KLEPMNTGYYVLLS 358
           + M  E     W  ++    +H  +      F +++   ++P +  +  +LS
Sbjct: 563 DRM-SERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILS 613



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 160/324 (49%), Gaps = 12/324 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +++++  +V N   SE + +F +M  + VE +SVTML +   C + G L LG   H  
Sbjct: 167 VAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGY 226

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            V+  ++ + S+ N L+ MY K G +    +LF+ VP +    W  MIS Y Q+G     
Sbjct: 227 VVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEA 286

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN-PFLNNALIN 191
           L ++ +M+   + P+ VT VGVL +CA LG    G  V   +          FL  AL+ 
Sbjct: 287 LNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALME 346

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +YA  GNL+    +F+ +  KT++SW  +I  +  +G  E A+ LF +M   G+ PD  +
Sbjct: 347 LYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYS 406

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH---YTCMVDLLGRAGQLNEALELI 308
             S LSAC     +  G +      + Y ++ G  +      ++D+  + G ++ A ++ 
Sbjct: 407 LASSLSACGTISFSQLGAQI-----HGYIIKTGNFNDFVQNALIDMYAKCGFVHSANKMF 461

Query: 309 ESMLVEPDGAVWGALLGACKIHKN 332
           E  + E     W +++  C   +N
Sbjct: 462 EK-IKEKSLVTWNSMI--CGFSQN 482



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 163/346 (47%), Gaps = 14/346 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVD 59
           VFD   K    +  +  LI  YV      EAVSL+ +M  Q   +I++     +L  C  
Sbjct: 55  VFDTFPKPD--SFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSG 112

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
            G L +G   H   +K G + D  V   L+ MY +   +D   K FD +P + ++ W+++
Sbjct: 113 FGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSI 172

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           +  + QNG A+  L+++ +M S  V PD+VT + V  +C+ LG+  +G  V   +     
Sbjct: 173 VLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREI 232

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            SN  LNN+LI MY + G+L  A  +F+ +P +    WT +I  Y   G  + A+ +F +
Sbjct: 233 ESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAK 292

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-----GPEHYTCMVDL 294
           M +  + P+    V VL AC+  G   +G    +G   +  + P     GP     +++L
Sbjct: 293 MQEFKMEPNQVTMVGVLCACARLGRVKEG-RSVHGFVIRRAMDPELDFLGP----ALMEL 347

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
               G L +  ++ E+ + E     W  L+     +   E A L F
Sbjct: 348 YADTGNLRDCHKVFET-IKEKTILSWNTLISIFTRNGQPEEALLLF 392



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 114/268 (42%), Gaps = 13/268 (4%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L+  Y + G  +  +++FD  P+     W  +I  Y   G     + LY EM    V  D
Sbjct: 39  LIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEM----VYQD 94

Query: 148 AV-----TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202
                   F  VL +C+  G  SVG +V  ++   GF S+  +  +L+ MY     L  A
Sbjct: 95  QTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDA 154

Query: 203 RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262
              FD MP + VV+W++I+  +  +G     + +F +M+   + PD    +SV  ACS  
Sbjct: 155 CKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSEL 214

Query: 263 GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGA 322
           G    G    +G   +  ++        ++ + G+ G L  A  L E++      A W  
Sbjct: 215 GSLRLG-RSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMT-APWTP 272

Query: 323 LLGACKIHKNVELAELAFGKV--IKLEP 348
           ++         + A   F K+   K+EP
Sbjct: 273 MISCYNQSGCFQEALNVFAKMQEFKMEP 300



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 3/149 (2%)

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
            G   +P  +  LI  YA+ G  + ++ +FD  P+     W  +I  Y   G  E AV L
Sbjct: 27  TGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSL 86

Query: 237 FDEML-KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295
           + EM+ +   +     F SVL ACS  G    G +  +G   K G +      T ++ + 
Sbjct: 87  YHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGK-VHGRVIKCGFESDAVVETSLLCMY 145

Query: 296 GRAGQLNEALELIESMLVEPDGAVWGALL 324
           G    L++A +  ++M +  D   W +++
Sbjct: 146 GEMSCLDDACKAFDTMPIR-DVVAWSSIV 173


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/508 (41%), Positives = 313/508 (61%), Gaps = 4/508 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +NA+ISGY       EA+SLF +M ++G+  N  T+  +L        + +    H +
Sbjct: 399 IAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGL 458

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK G   D  V N L+  Y KC  V+   ++F++     L+++ +MI+ YAQ G     
Sbjct: 459 SVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEA 518

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+L+ EM+ + + PD      +L++CA+L A   G ++   I   GF  + F  N+L+NM
Sbjct: 519 LKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNM 578

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG++  A   F  +  + +VSW+A+IGG   HGHG  A+QLF++MLK G+ P+    
Sbjct: 579 YAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITL 638

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           VSVL AC+HAGL  +   YF  M+  +G +P  EHY CM+DLLGRAG++NEA+EL+  M 
Sbjct: 639 VSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMP 698

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            E + +VWGALLGA +IHK+VEL   A   +  LEP  +G +VLL+NIY+ A   + +  
Sbjct: 699 FEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAE 758

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR +MR+ ++KK+PG S++E+K +V+ F+VGDR+H+++ EIY  LD+L +L+ +      
Sbjct: 759 VRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPM 818

Query: 433 SDQKNSEEHLNDTEV----HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
            +    +   ++ E+    HSEKLA+AFG+I T  G  I V KNLR+C DCH   K + K
Sbjct: 819 VEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICK 878

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           IV R+ IVRD  RFHHFK G CSC DYW
Sbjct: 879 IVSREIIVRDINRFHHFKDGSCSCGDYW 906



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 102/299 (34%), Positives = 156/299 (52%), Gaps = 4/299 (1%)

Query: 46  NSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLF 105
            SV+   LL  C     L  G+  H    K GL  D S+ N L+ +Y KC    Y RKL 
Sbjct: 55  TSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLV 114

Query: 106 DQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHS 165
           D+  E  L++W+A+ISGYAQNGL    L  + EM  LGV  +  TF  VL +C+ +    
Sbjct: 115 DESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLR 174

Query: 166 VGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYG 225
           +G +V   +  +GF  + F+ N L+ MYA+C     ++ +FD +P + VVSW A+   Y 
Sbjct: 175 IGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYV 234

Query: 226 IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL-EYFYGMKNKYGLQPG 284
                  AV LF EM+ SGI+P+  +  S+++AC+  GL D    +  +G   K G    
Sbjct: 235 QXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACT--GLRDSSRGKIIHGYLIKLGYDWD 292

Query: 285 PEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
           P     +VD+  + G L +A+ + E  + +PD   W A++  C +H++ E A    G++
Sbjct: 293 PFSANALVDMYAKVGDLADAISVFEK-IKQPDIVSWNAVIAGCVLHEHHEQALELLGQM 350



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 123/228 (53%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++ALISGY  N L   A+  F +M   GV+ N  T   +L  C     L +G   H +
Sbjct: 123 VSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGV 182

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            V  G + D  V N L+ MY KC      ++LFD++PE+ +++WNA+ S Y Q       
Sbjct: 183 VVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEA 242

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + L+ EM   G+ P+  +   ++++C  L   S G  +   +   G+  +PF  NAL++M
Sbjct: 243 VGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDM 302

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           YA+ G+L  A ++F+ + +  +VSW A+I G  +H H E A++L  +M
Sbjct: 303 YAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQM 350



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/382 (28%), Positives = 181/382 (47%), Gaps = 40/382 (10%)

Query: 16  NALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMC---CHC 71
           NAL+  Y     +++A+S+F K+++   V  N+V   C+L    +     LG      H 
Sbjct: 297 NALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHS 356

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K  ++ D  V   L+ MY KC  ++  R  F+ +PEK LI WNA+ISGY+Q      
Sbjct: 357 SLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDME 416

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L L+ EM   G+  +  T   +L S A L    V  +V      +GF S+ ++ N+LI+
Sbjct: 417 ALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLID 476

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
            Y +C +++ A  IF+      +VS+T++I  Y  +G GE A++LF EM    ++PD   
Sbjct: 477 SYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFV 536

Query: 252 FVSVLSACSHAGLTDKG-------------LEYFYG--MKNKYG---------------L 281
             S+L+AC++    ++G             L+ F G  + N Y                 
Sbjct: 537 CSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELT 596

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGACKIHKNVELAEL 338
           + G   ++ M+  L + G   +AL+L   ML   V P+     ++LGAC     V  A+L
Sbjct: 597 ERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKL 656

Query: 339 AFGKVIKL---EPMNTGYYVLL 357
            F  + +L   +PM   Y  ++
Sbjct: 657 YFESMEELFGFKPMQEHYACMI 678



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 106/419 (25%), Positives = 178/419 (42%), Gaps = 73/419 (17%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +     V +NAL S YV      EAV LF +M   G++ N  ++  ++  C   
Sbjct: 214 LFDEIPERN--VVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGL 271

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
                G   H   +K G D D    N L+ MY K G +     +F+++ +  +++WNA+I
Sbjct: 272 RDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVI 331

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +G   +      LEL  +MK                       HS  ++++ +       
Sbjct: 332 AGCVLHEHHEQALELLGQMKR--------------------QLHSSLMKMDME------- 364

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S+ F++  L++MY++C  L+ AR  F+ +P K +++W AII GY  +     A+ LF EM
Sbjct: 365 SDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEM 424

Query: 241 LKSGIRPDGTAFVSVLSACS-----HAGLTDKGLEYFYGMK----------NKYGLQPGP 285
            K GI  + T   ++L + +     H      GL    G            + YG     
Sbjct: 425 HKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHV 484

Query: 286 E---------------HYTCMVDLLGRAGQLNEALEL---IESMLVEPDGAVWGALLGAC 327
           E                +T M+    + GQ  EAL+L   ++ M ++PD  V  +LL AC
Sbjct: 485 EDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNAC 544

Query: 328 KIHKNVELAELAFGKVIKLEPMNTGYYV------LLSNIYSEARNLDGIMRVRMMMRER 380
                  L+    GK + +  +  G+ +       L N+Y++  ++D   R    + ER
Sbjct: 545 -----ANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTER 598



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 62/115 (53%)

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P +V++  +LS C    +   GL++   I  +G   +P + N LIN+Y++C     AR +
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKL 113

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
            D      +VSW+A+I GY  +G G  A+  F EM   G++ +   F SVL ACS
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/521 (42%), Positives = 316/521 (60%), Gaps = 9/521 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD   K  H    +N LI GY  N     AV L+ +M + G+  ++ T   +L  C   
Sbjct: 132 LFDRIPK--HNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAAL 189

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             +  G   H   V+ G + D  VG  L+ MY KCG V   R++FD++  +  + WN+M+
Sbjct: 190 SAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSML 249

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           + Y+QNG     L L  EM   G+ P   T V  +S+ A   A   G E+        F 
Sbjct: 250 AAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFE 309

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S+  +  AL++MYA+CG+++ AR +F+ +  K VVSW A+I GY +HGH   A+ LF+EM
Sbjct: 310 SHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEM 369

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            +   +PD   FV VLSACSH GL ++G  +F  M   Y + P  +HYTCMVDLLG +G+
Sbjct: 370 NRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGR 428

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L+EA  LI  M V PD  VWGALL +CKIH NVEL E+A  ++I+LEP + G YV+LSNI
Sbjct: 429 LDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNI 488

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y++A   +G+ ++R +M +RRLKK    S++E+K +VH F+ GD +H  + EIY  L+++
Sbjct: 489 YAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERV 548

Query: 421 ENLVQE-----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRI 475
             L++E       G+   D ++ +E  N    HSE+LAIAFG+I+T PGT +++ KNLRI
Sbjct: 549 GGLMKEAGYSPSTGSVFHDVED-DEKANMVCSHSERLAIAFGLISTPPGTRLLITKNLRI 607

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           C DCH+ IK +SKI +R+  VRD  R+HHFK G CSC DYW
Sbjct: 608 CEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 648



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 162/335 (48%), Gaps = 5/335 (1%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           LL  C+    +  G   H      G   D  +   L+ +Y  C S+   R LFD++P+  
Sbjct: 81  LLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHN 140

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
           +  WN +I GYA NG     ++LY +M   G+ PD  TF  VL +CA L A   G E+ +
Sbjct: 141 IFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHE 200

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
            +   G+  + F+  ALI+MYA+CG +  AR +FD +  +  V W +++  Y  +GH + 
Sbjct: 201 HVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDA 260

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
            + L  EM+ +G+RP     V+ +SA +      +G E  +G+  +   +   +  T +V
Sbjct: 261 CLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRE-LHGLSWRQEFESHDKVKTALV 319

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKL-EPMNT 351
           D+  + G +  A  L E + V+     W A++    +H +   A   F ++ ++ +P + 
Sbjct: 320 DMYAKCGSVRVARNLFERLGVK-RVVSWNAMITGYAMHGHATEALDLFEEMNRVAKPDHI 378

Query: 352 GYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDP 386
            +  +LS         +G M    M+R+ ++  DP
Sbjct: 379 TFVGVLSACSHGGLLEEGWMFFETMIRDYKI--DP 411



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 10/191 (5%)

Query: 140 KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNL 199
           +S  + P    +  +L SC    A   G ++  Q+   GFG +  +   L+N+Y  C +L
Sbjct: 67  ESTCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSL 126

Query: 200 KKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC 259
             AR +FD +P+  +  W  +I GY  +G  E AVQL+ +M   G+ PD   F  VL AC
Sbjct: 127 SSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKAC 186

Query: 260 SHAGLTDKGLEYFYGMKNKYGLQPGPEHY----TCMVDLLGRAGQLNEALELIESMLVEP 315
           +     + G E      +++ +Q G E        ++D+  + G +  A E+ + +LV  
Sbjct: 187 AALSAIEHGREI-----HEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVR- 240

Query: 316 DGAVWGALLGA 326
           D  +W ++L A
Sbjct: 241 DAVLWNSMLAA 251


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/509 (41%), Positives = 311/509 (61%), Gaps = 8/509 (1%)

Query: 15  YNALISGYVLNSLVSE-AVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +N LI  Y       + A++L+G M    +  N  T   +L  C     L LG   H   
Sbjct: 99  FNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTVHGSV 158

Query: 74  VKFGLDLDFSVGNCLMTMYVKC-GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
           VKFG D D  V N ++ MY  C G ++  RK+FD++P+   +TW+AMI GYA+ G +T  
Sbjct: 159 VKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEA 218

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + L+REM+   VCPD +T V +LS+C  LGA  +G  +E  I+ +       ++NALI+M
Sbjct: 219 VALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIERHEIHKPVEVSNALIDM 278

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           +A+CG++ KA  +F  M  KT+VSWT++I G  +HG G+ A  LF+EM  SG+ PD  AF
Sbjct: 279 FAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAF 338

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + +LSACSH+GL ++G EYF  M  KY L P  EHY CMVD+  R G + EALE + +M 
Sbjct: 339 IGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMP 398

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           +EP+  +   L+ AC+ H   +L E     ++K EP++   YVLLSNIY++  + +   +
Sbjct: 399 IEPNPVILRTLVSACRGHGEFKLGEKITKLLMKHEPLHESNYVLLSNIYAKTLSWEKKTK 458

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           +R +M  + +KK PG + +E+   ++ F+ GD++H Q  EIY M+D++   +++  G + 
Sbjct: 459 IREVMEVKGMKKVPGSTMIEIDNEIYEFVAGDKSHKQHKEIYEMVDEMGREMKK-SGYRP 517

Query: 433 SDQK-----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           S  +     N E+  +    HSEKLAIAFG++ T PGT I ++KNLR+C DCH   K +S
Sbjct: 518 STSEVLLDINEEDKEDSLNRHSEKLAIAFGLLRTPPGTPIRIVKNLRVCSDCHSASKFIS 577

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KI DR+ I+RD  RFHHFKSG CSC D+W
Sbjct: 578 KIYDREIIMRDRNRFHHFKSGQCSCGDFW 606



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 109/212 (51%), Gaps = 5/212 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  KS   +V ++A+I GY      +EAV+LF +M+   V  + +TM+ +L  C D 
Sbjct: 190 VFDEMPKSD--SVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDL 247

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L LG        +  +     V N L+ M+ KCG +    KLF  + EK +++W ++I
Sbjct: 248 GALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVI 307

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            G A +G       L+ EM S GV PD V F+G+LS+C+H G    G E    +    + 
Sbjct: 308 VGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKK-YK 366

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMP 210
             P + +   +++MY R G +K+A      MP
Sbjct: 367 LVPKIEHYGCMVDMYCRTGLVKEALEFVRNMP 398


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/514 (40%), Positives = 319/514 (62%), Gaps = 12/514 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++ISG       + A+ +F  MR  GV  + +T++ L       G        HC 
Sbjct: 236 VTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCY 295

Query: 73  CVKFGLDLD-FSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
            ++ G D+D    GN ++ MY K  +++  +++FD +P +  ++WN +I+GY QNGLA  
Sbjct: 296 VMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANE 355

Query: 132 VLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
            +E Y  M K  G+     TFV VL + +HLGA   G+ +       G   + ++   LI
Sbjct: 356 AVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLI 415

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           ++YA+CG L +A  +F+ MPR++   W AII G G+HGHG  A+ LF  M + GI+PD  
Sbjct: 416 DLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHV 475

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            FVS+L+ACSHAGL D+G  +F  M+  Y + P  +HY CM D+LGRAGQL+EA   I++
Sbjct: 476 TFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQN 535

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M ++PD AVWGALLGAC+IH NVE+ ++A   + +L+P N GYYVL+SN+Y++    DG+
Sbjct: 536 MPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGV 595

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRN----HHQTV--EIYRMLDKLENL- 423
             VR ++R + L+K PG+S +E+K  V++F  G++      H+ +  E+  +L K+ ++ 
Sbjct: 596 DEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQTEPHPQHEEIQAELRSLLAKIRSVG 655

Query: 424 -VQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLF 482
            V ++    +  + + +EH+ +   HSE+LAIAFGIINT   T + + KNLR+CGDCH  
Sbjct: 656 YVSDYSFVLQDVEDDEKEHILNN--HSERLAIAFGIINTPSRTPLHIYKNLRVCGDCHNA 713

Query: 483 IKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            K +S+I +R+ IVRD+ RFHHFK G CSC D+W
Sbjct: 714 TKYISQITEREIIVRDSNRFHHFKDGHCSCGDFW 747



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 120/382 (31%), Positives = 199/382 (52%), Gaps = 13/382 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE   S      +NA++SG   N+  +EAV LFG+M  +GV  ++VT+  +LP+CV  
Sbjct: 125 VFDE--MSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLL 182

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G   L +  H   VK GLD +  V N L+ +Y K G ++  + +F  +  + L+TWN++I
Sbjct: 183 GDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSII 242

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SG  Q G     L++++ M+  GV PD +T V + S+ A  G       +   +   G+ 
Sbjct: 243 SGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWD 302

Query: 181 SNPFL-NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            +  +  NA+++MYA+  N++ A+ +FD MP +  VSW  +I GY  +G    AV+ +  
Sbjct: 303 VDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGH 362

Query: 240 MLK-SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
           M K  G++     FVSVL A SH G   +G+   + +  K GL       TC++DL  + 
Sbjct: 363 MQKHEGLKAIQGTFVSVLPAYSHLGALQQGMR-MHALSIKIGLNVDVYVGTCLIDLYAKC 421

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVL 356
           G+L EA+ L E M     G  W A++    +H +   A   F ++ +  ++P +  +  L
Sbjct: 422 GKLAEAMLLFEKMPRRSTGP-WNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSL 480

Query: 357 L-----SNIYSEARNLDGIMRV 373
           L     + +  + R+   +M+V
Sbjct: 481 LAACSHAGLVDQGRSFFDVMQV 502



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 147/313 (46%), Gaps = 10/313 (3%)

Query: 70  HCICVKFGLDLD--FSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
           H   ++ GL     F+ G+ L+  Y++ G +    K+FD++ E+ +  WNAM+SG  +N 
Sbjct: 90  HACALRLGLVRPSVFTSGS-LVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNA 148

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
            A   + L+  M   GV  D VT   VL  C  LG   + L +      +G     F+ N
Sbjct: 149 RAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCN 208

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           ALI++Y + G L++A+ +F GM  + +V+W +II G    G    A+++F  M  SG+ P
Sbjct: 209 ALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSP 268

Query: 248 DGTAFVSVLSACSHA--GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
           D    VS+ SA +    G + K L + Y M+  + +         +VD+  +   +  A 
Sbjct: 269 DVLTLVSLASAIAQGGDGRSAKSL-HCYVMRRGWDVDDIIAG-NAIVDMYAKLSNIEAAQ 326

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT--GYYVLLSNIYSE 363
            + +SM V+ D   W  L+     +     A   +G + K E +    G +V +   YS 
Sbjct: 327 RMFDSMPVQ-DSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSH 385

Query: 364 ARNLDGIMRVRMM 376
              L   MR+  +
Sbjct: 386 LGALQQGMRMHAL 398


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/537 (41%), Positives = 315/537 (58%), Gaps = 39/537 (7%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V +  LI G +     S++V LF +MR + + I+   +  L+  C +   L LG   H 
Sbjct: 326 SVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHS 385

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVD-------------------------------Y 100
           +C+K G +    V N L+++Y KCG +                                 
Sbjct: 386 LCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIK 445

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL-GVCPDAVTFVGVLSSCA 159
            R+ FD +  +  ITWNAM+  Y Q+G     L++Y  M S   V PD VT+V +   CA
Sbjct: 446 AREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCA 505

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
            +GA+ +G ++       G   N  + NA I MY++CG + +A+ +FD +  K VVSW A
Sbjct: 506 DIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNA 565

Query: 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279
           +I GY  HG G+ A + FD+ML  G +PD  ++V+VLS CSH+GL  +G  YF  M   +
Sbjct: 566 MITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVH 625

Query: 280 GLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELA 339
           G+ PG EH++CMVDLLGRAG L EA +LI+ M ++P   VWGALL ACKIH N ELAELA
Sbjct: 626 GISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELA 685

Query: 340 FGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHL 399
              V +L+  ++G Y+LL+ IYS+A   D   +VR +MR++ +KK+PGYS++E++ +VH+
Sbjct: 686 AKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHV 745

Query: 400 FMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGII 459
           F   D +H Q + I   +D+L   +  H G  R++   SE H      HSEKLA+AFGI+
Sbjct: 746 FKADDVSHPQVIAIRNKMDELMEKI-AHLGYVRTESPRSEIH------HSEKLAVAFGIM 798

Query: 460 NTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +      I +MKNLRICGDCH  IKL+S + DR+F++RD  RFHHFKSG CSC DYW
Sbjct: 799 SLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 855



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/431 (23%), Positives = 184/431 (42%), Gaps = 43/431 (9%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +I+    +  V EA+ L  +M  +GV ++S T    L  C     L  G   H  
Sbjct: 226 VSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAK 285

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++    +D  V + L+ +Y KCGS    +++F+ + ++  ++W  +I G  Q    +  
Sbjct: 286 VIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKS 345

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           +EL+ +M++  +  D      ++S C +     +G ++      +G      ++N+LI++
Sbjct: 346 VELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISL 405

Query: 193 YARCGNLK-------------------------------KARAIFDGMPRKTVVSWTAII 221
           YA+CG+L+                               KAR  FDGM  +  ++W A++
Sbjct: 406 YAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAML 465

Query: 222 GGYGIHGHGEVAVQLFDEML-KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           G Y  HG  E  ++++  ML +  + PD   +V++   C+  G    G +   G   K G
Sbjct: 466 GAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLG-DQIIGHTVKAG 524

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           L          + +  + G+++EA +L + +L   D   W A++     H   + A   F
Sbjct: 525 LILNVSVANAAITMYSKCGRISEAQKLFD-LLNGKDVVSWNAMITGYSQHGMGKQAAKTF 583

Query: 341 GKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSY----VELK 394
             ++    +P    Y  +LS         +G +   MM R   +   PG  +    V+L 
Sbjct: 584 DDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGIS--PGLEHFSCMVDLL 641

Query: 395 GRV-HLFMVGD 404
           GR  HL    D
Sbjct: 642 GRAGHLTEAKD 652



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 158/355 (44%), Gaps = 47/355 (13%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWL---GMCC 69
           + +N +++GY     +S+A  LF +M  + V     +   L+     P   W+    + C
Sbjct: 88  ITHNIMMNGYAKQGSLSDAEELFDRMPRRDV----ASWNTLMSDTSRPAGSWMSCGALGC 143

Query: 70  HCICV-------KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV-------------- 108
             +         KF    D  V   L+ M+V+CG VD+  +LF Q+              
Sbjct: 144 RELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAG 203

Query: 109 -----------------PEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTF 151
                             E+ +++WN MI+  +Q+G     L L  EM   GV  D+ T+
Sbjct: 204 YAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTY 263

Query: 152 VGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR 211
              L++CA L +   G ++  ++  +    +P++ +ALI +YA+CG+ K+A+ +F+ +  
Sbjct: 264 TSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQD 323

Query: 212 KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEY 271
           +  VSWT +IGG   +     +V+LF++M    +  D  A  +++S C +      G + 
Sbjct: 324 RNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQ- 382

Query: 272 FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
            + +  K G          ++ L  + G L  A E + S + E D   W +++ A
Sbjct: 383 LHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNA-EFVFSSMSERDIVSWTSMITA 436



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 119/310 (38%), Gaps = 40/310 (12%)

Query: 54  LPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFD-QVPEKG 112
           L  C   G L      H   V  GL     + N L+  Y+ CG++   R+L    + E  
Sbjct: 27  LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPN 86

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVC------PDAVTFVGVLSSCAHLGAHSV 166
           +IT N M++GYA+ G  +   EL+  M    V        D     G   SC  LG   +
Sbjct: 87  VITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCREL 146

Query: 167 GLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT------------- 213
             ++        F  +P +  AL++M+ RCG +  A  +F  + R T             
Sbjct: 147 APQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAK 206

Query: 214 ------------------VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSV 255
                             VVSW  +I      G    A+ L  EM + G+R D T + S 
Sbjct: 207 LYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSS 266

Query: 256 LSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEP 315
           L+AC+       G +  +    +   Q  P   + +++L  + G   EA  +  S L + 
Sbjct: 267 LTACARLFSLGWG-KQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNS-LQDR 324

Query: 316 DGAVWGALLG 325
           +   W  L+G
Sbjct: 325 NSVSWTVLIG 334



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 20/180 (11%)

Query: 146 PDAVT--FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
           P AVT      L SC   GA +    +  ++   G  S  FL N L++ Y  CG L  AR
Sbjct: 16  PHAVTQALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDAR 75

Query: 204 AIFDG-MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI-----------RPDGTA 251
            +    +    V++   ++ GY   G    A +LFD M +  +           RP G+ 
Sbjct: 76  RLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSW 135

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
                 +C   G  +   +   G+  K+     P+  T +VD+  R G ++ A  L   +
Sbjct: 136 M-----SCGALGCRELAPQ-LLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQI 189



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 99/252 (39%), Gaps = 40/252 (15%)

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII------- 221
           +  + ++A+    N   +N ++N YA+ G+L  A  +FD MPR+ V SW  ++       
Sbjct: 73  DARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPA 132

Query: 222 GGY---GIHGHGEVAVQLFDEMLKSGI--RPD-GTAFVSVLSACSHAGLTDKGL------ 269
           G +   G  G  E+A QL     K      PD  TA V +   C +     +        
Sbjct: 133 GSWMSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERP 192

Query: 270 ------EYFYGMKNKYGLQPGPEHY-----------TCMVDLLGRAGQLNEALELIESML 312
                     G    YG+    E++             M+  L ++G++ EAL L+  M 
Sbjct: 193 TIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMH 252

Query: 313 ---VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV-LLSNIYSEARNLD 368
              V  D   + + L AC    ++   +    KVI+  P    Y    L  +Y++  +  
Sbjct: 253 RKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFK 312

Query: 369 GIMRVRMMMRER 380
              RV   +++R
Sbjct: 313 EAKRVFNSLQDR 324


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/507 (42%), Positives = 315/507 (62%), Gaps = 5/507 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +N +I G+  +   S AV LF +M     +  ++ T   L         + LG   H + 
Sbjct: 103 WNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVV 162

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           V+ G D    V N L+ MY   GS+    ++F+ +  +  + WN++I+G+A NG+    L
Sbjct: 163 VRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEAL 222

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
            LYREM S GV PD  T V +LS+C  LGA ++G  V   +   G   N   +NAL+++Y
Sbjct: 223 TLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLY 282

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
           ++CGN + A+ +FD M  ++VVSWT++I G  ++G G  A++LF E+ + G++P    FV
Sbjct: 283 SKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFV 342

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
            VL ACSH G+ D+G  YF  MK +YG+ P  EH+ CMVDLL RAG++ +A + I +M V
Sbjct: 343 GVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPV 402

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
            P+  +W  LLGAC IH ++EL E+A  ++ +LE  ++G +VLLSN+Y+  R    +  V
Sbjct: 403 PPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNV 462

Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS 433
           R +M  + +KK PGYS VELK RV+ F++GDR+H Q+ E Y ML K+  L++      R+
Sbjct: 463 RKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRT 522

Query: 434 DQ--KNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKI 489
                + EE   +T +  H+EK+AIAF ++NT PGT I +MKNLR+C DCHL IKL+SK+
Sbjct: 523 VNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKV 582

Query: 490 VDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +R+ IVRD +RFHHFK G CSCKDYW
Sbjct: 583 FEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 131/234 (55%), Gaps = 7/234 (2%)

Query: 6   IKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWL 65
           I S    V +N++I+G+ LN + +EA++L+ +M  +GVE +  TM+ LL  CV+ G L L
Sbjct: 196 IMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALAL 255

Query: 66  GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
           G   H   VK GL  +    N L+ +Y KCG+    +K+FD++ E+ +++W ++I G A 
Sbjct: 256 GERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAV 315

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
           NGL    L+L+ E++  G+ P  +TFVGVL +C+H G    G    ++++   +G  P +
Sbjct: 316 NGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEE-YGILPRI 374

Query: 186 NN--ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGH---GEVA 233
            +   ++++  R G +  A      MP     V W  ++G   IHGH   GEVA
Sbjct: 375 EHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVA 428



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 129/259 (49%), Gaps = 7/259 (2%)

Query: 70  HCICVKFGL---DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQN 126
           H   ++ G+   + DF+  + +  +      + +  ++F+Q+    + TWN MI G+A++
Sbjct: 55  HAFSIRHGVPPQNPDFN-KHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAES 113

Query: 127 GLATHVLELYREMKSL-GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
              +  +EL+ +M +   + PD  TF  +  + A L   S+G  +   +  NGF S  F+
Sbjct: 114 ENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFV 173

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
            N+L++MY+  G+L  A  +F+ M  +  V+W ++I G+ ++G    A+ L+ EM   G+
Sbjct: 174 QNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGV 233

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
            PDG   VS+LSAC   G    G E  +    K GL         ++DL  + G   +A 
Sbjct: 234 EPDGFTMVSLLSACVELGALALG-ERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQ 292

Query: 306 ELIESMLVEPDGAVWGALL 324
           ++ + M  E     W +L+
Sbjct: 293 KVFDEM-EERSVVSWTSLI 310


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/537 (41%), Positives = 315/537 (58%), Gaps = 39/537 (7%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V +  LI G +     S++V LF +MR + + I+   +  L+  C +   L LG   H 
Sbjct: 336 SVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHS 395

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVD-------------------------------Y 100
           +C+K G +    V N L+++Y KCG +                                 
Sbjct: 396 LCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIK 455

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL-GVCPDAVTFVGVLSSCA 159
            R+ FD +  +  ITWNAM+  Y Q+G     L++Y  M S   V PD VT+V +   CA
Sbjct: 456 AREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCA 515

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
            +GA+ +G ++       G   N  + NA I MY++CG + +A+ +FD +  K VVSW A
Sbjct: 516 DIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNA 575

Query: 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279
           +I GY  HG G+ A + FD+ML  G +PD  ++V+VLS CSH+GL  +G  YF  M   +
Sbjct: 576 MITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVH 635

Query: 280 GLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELA 339
           G+ PG EH++CMVDLLGRAG L EA +LI+ M ++P   VWGALL ACKIH N ELAELA
Sbjct: 636 GISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELA 695

Query: 340 FGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHL 399
              V +L+  ++G Y+LL+ IYS+A   D   +VR +MR++ +KK+PGYS++E++ +VH+
Sbjct: 696 AKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHV 755

Query: 400 FMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGII 459
           F   D +H Q + I   +D+L   +  H G  R++   SE H      HSEKLA+AFGI+
Sbjct: 756 FKADDVSHPQVIAIRNKMDELMEKI-AHLGYVRTESPRSEIH------HSEKLAVAFGIM 808

Query: 460 NTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +      I +MKNLRICGDCH  IKL+S + DR+F++RD  RFHHFKSG CSC DYW
Sbjct: 809 SLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/431 (23%), Positives = 184/431 (42%), Gaps = 43/431 (9%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +I+    +  V EA+ L  +M  +GV ++S T    L  C     L  G   H  
Sbjct: 236 VSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAK 295

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++    +D  V + L+ +Y KCGS    +++F+ + ++  ++W  +I G  Q    +  
Sbjct: 296 VIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKS 355

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           +EL+ +M++  +  D      ++S C +     +G ++      +G      ++N+LI++
Sbjct: 356 VELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISL 415

Query: 193 YARCGNLK-------------------------------KARAIFDGMPRKTVVSWTAII 221
           YA+CG+L+                               KAR  FDGM  +  ++W A++
Sbjct: 416 YAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAML 475

Query: 222 GGYGIHGHGEVAVQLFDEML-KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           G Y  HG  E  ++++  ML +  + PD   +V++   C+  G    G +   G   K G
Sbjct: 476 GAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLG-DQIIGHTVKAG 534

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           L          + +  + G+++EA +L + +L   D   W A++     H   + A   F
Sbjct: 535 LILNVSVANAAITMYSKCGRISEAQKLFD-LLNGKDVVSWNAMITGYSQHGMGKQAAKTF 593

Query: 341 GKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSY----VELK 394
             ++    +P    Y  +LS         +G +   MM R   +   PG  +    V+L 
Sbjct: 594 DDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGIS--PGLEHFSCMVDLL 651

Query: 395 GRV-HLFMVGD 404
           GR  HL    D
Sbjct: 652 GRAGHLTEAKD 662



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 176/411 (42%), Gaps = 37/411 (9%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEI-NSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +N L+SGY       + +  F  M   G  + N+ T  C++  C   G   L      + 
Sbjct: 105 WNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLF 164

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV------------------------- 108
            KF    D  V   L+ M+V+CG VD+  +LF Q+                         
Sbjct: 165 WKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAI 224

Query: 109 ------PEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162
                  E+ +++WN MI+  +Q+G     L L  EM   GV  D+ T+   L++CA L 
Sbjct: 225 EYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLF 284

Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIG 222
           +   G ++  ++  +    +P++ +ALI +YA+CG+ K+A+ +F+ +  +  VSWT +IG
Sbjct: 285 SLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIG 344

Query: 223 GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQ 282
           G   +     +V+LF++M    +  D  A  +++S C +      G +  + +  K G  
Sbjct: 345 GSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQ-LHSLCLKSGHN 403

Query: 283 PGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGK 342
                   ++ L  + G L  A E + S + E D   W +++ A     N+  A   F  
Sbjct: 404 RAIVVSNSLISLYAKCGDLQNA-EFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDG 462

Query: 343 VIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVEL 393
           +     +   +  +L          DG+     M+ ++ +  D   +YV L
Sbjct: 463 MATRNAIT--WNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPD-WVTYVTL 510



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 119/276 (43%), Gaps = 42/276 (15%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ-----NGLATHVLELYREMK 140
           N +M  Y K GS+    +LFD++P + + +WN ++SGY Q     +GL T V  ++R   
Sbjct: 75  NIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFV-SMHRSGD 133

Query: 141 SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
           SL   P+A TF  V+ SC  LG   +  ++        F  +P +  AL++M+ RCG + 
Sbjct: 134 SL---PNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVD 190

Query: 201 KARAIFDGMPRKT-------------------------------VVSWTAIIGGYGIHGH 229
            A  +F  + R T                               VVSW  +I      G 
Sbjct: 191 FASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGR 250

Query: 230 GEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYT 289
              A+ L  EM + G+R D T + S L+AC+       G +  +    +   Q  P   +
Sbjct: 251 VREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWG-KQLHAKVIRSLPQIDPYVAS 309

Query: 290 CMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
            +++L  + G   EA  +  S L + +   W  L+G
Sbjct: 310 ALIELYAKCGSFKEAKRVFNS-LQDRNSVSWTVLIG 344



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 2/144 (1%)

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
           +  + ++A+    N   +N ++N YA+ G+L  A  +FD MPR+ V SW  ++ GY    
Sbjct: 57  DARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQAR 116

Query: 229 HGEVAVQLFDEMLKSGIR-PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH 287
                ++ F  M +SG   P+   F  V+ +C   G  +   +   G+  K+     P+ 
Sbjct: 117 RFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQ-LLGLFWKFDFWGDPDV 175

Query: 288 YTCMVDLLGRAGQLNEALELIESM 311
            T +VD+  R G ++ A  L   +
Sbjct: 176 ETALVDMFVRCGYVDFASRLFSQI 199


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/508 (41%), Positives = 313/508 (61%), Gaps = 4/508 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +NA+ISGY       EA+SLF +M ++G+  N  T+  +L        + +    H +
Sbjct: 426 IAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGL 485

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK G   D  V N L+  Y KC  V+   ++F++     L+++ +MI+ YAQ G     
Sbjct: 486 SVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEA 545

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+L+ EM+ + + PD      +L++CA+L A   G ++   I   GF  + F  N+L+NM
Sbjct: 546 LKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNM 605

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG++  A   F  +  + +VSW+A+IGG   HGHG  A+QLF++MLK G+ P+    
Sbjct: 606 YAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITL 665

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           VSVL AC+HAGL  +   YF  M+  +G +P  EHY CM+DLLGRAG++NEA+EL+  M 
Sbjct: 666 VSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMP 725

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            E + +VWGALLGA +IHK+VEL   A   +  LEP  +G +VLL+NIY+ A   + +  
Sbjct: 726 FEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAE 785

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR +MR+ ++KK+PG S++E+K +V+ F+VGDR+H+++ EIY  LD+L +L+ +      
Sbjct: 786 VRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPM 845

Query: 433 SDQKNSEEHLNDTEV----HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
            +    +   ++ E+    HSEKLA+AFG+I T  G  I V KNLR+C DCH   K + K
Sbjct: 846 VEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICK 905

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           IV R+ IVRD  RFHHFK G CSC DYW
Sbjct: 906 IVSREIIVRDINRFHHFKDGSCSCGDYW 933



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/300 (35%), Positives = 160/300 (53%), Gaps = 6/300 (2%)

Query: 46  NSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLF 105
            SV+   LL  C     L  G+  H    K GL  D S+ N L+ +Y KC +  Y RKL 
Sbjct: 55  TSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLV 114

Query: 106 DQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHS 165
           D+  E  L++W+A+ISGYAQNGL    L  + EM  LGV  +  TF  VL +C+ +    
Sbjct: 115 DESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLR 174

Query: 166 VGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGY- 224
           +G +V   +  +GF  + F+ N L+ MYA+C     ++ +FD +P + VVSW A+   Y 
Sbjct: 175 IGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYV 234

Query: 225 GIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL-EYFYGMKNKYGLQP 283
            I   GE AV LF EM+ SGI+P+  +  S+++AC+  GL D    +  +G   K G   
Sbjct: 235 QIDFCGE-AVGLFYEMVLSGIKPNEFSLSSMVNACT--GLRDSSRGKIIHGYLIKLGYDW 291

Query: 284 GPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
            P     +VD+  + G L +A+ + E  + +PD   W A++  C +H++ E A    G++
Sbjct: 292 DPFSANALVDMYAKVGDLADAISVFEK-IKQPDIVSWNAVIAGCVLHEHHEQALELLGQM 350



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 161/312 (51%), Gaps = 2/312 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++ALISGY  N L   A+  F +M   GV+ N  T   +L  C     L +G   H +
Sbjct: 123 VSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGV 182

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            V  G + D  V N L+ MY KC      ++LFD++PE+ +++WNA+ S Y Q       
Sbjct: 183 VVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEA 242

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + L+ EM   G+ P+  +   ++++C  L   S G  +   +   G+  +PF  NAL++M
Sbjct: 243 VGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDM 302

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+ G+L  A ++F+ + +  +VSW A+I G  +H H E A++L  +M +SGI P+    
Sbjct: 303 YAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTL 362

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S L AC+  GL + G +    +  K  ++        +VD+  +   L +A  +  ++L
Sbjct: 363 SSALKACAGMGLKELGRQLHSSLM-KMDMESDLFVSVGLVDMYSKCDLLEDA-RMAFNLL 420

Query: 313 VEPDGAVWGALL 324
            E D   W A++
Sbjct: 421 PEKDLIAWNAII 432



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 117/390 (30%), Positives = 187/390 (47%), Gaps = 37/390 (9%)

Query: 4   ESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL 63
           E IK   + V +NA+I+G VL+    +A+ L G+M+  G+  N  T+   L  C   G  
Sbjct: 317 EKIKQPDI-VSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLK 375

Query: 64  WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGY 123
            LG   H   +K  ++ D  V   L+ MY KC  ++  R  F+ +PEK LI WNA+ISGY
Sbjct: 376 ELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGY 435

Query: 124 AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP 183
           +Q       L L+ EM   G+  +  T   +L S A L    V  +V      +GF S+ 
Sbjct: 436 SQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDI 495

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
           ++ N+LI+ Y +C +++ A  IF+      +VS+T++I  Y  +G GE A++LF EM   
Sbjct: 496 YVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDM 555

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKG-------------LEYFYG--MKNKYG-------- 280
            ++PD     S+L+AC++    ++G             L+ F G  + N Y         
Sbjct: 556 ELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDA 615

Query: 281 -------LQPGPEHYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGACKIH 330
                   + G   ++ M+  L + G   +AL+L   ML   V P+     ++LGAC   
Sbjct: 616 GRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHA 675

Query: 331 KNVELAELAFGKVIKL---EPMNTGYYVLL 357
             V  A+L F  + +L   +PM   Y  ++
Sbjct: 676 GLVTEAKLYFESMEELFGFKPMQEHYACMI 705



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 189/419 (45%), Gaps = 46/419 (10%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +     V +NAL S YV      EAV LF +M   G++ N  ++  ++  C   
Sbjct: 214 LFDEIPERN--VVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGL 271

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
                G   H   +K G D D    N L+ MY K G +     +F+++ +  +++WNA+I
Sbjct: 272 RDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVI 331

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +G   +      LEL  +MK  G+CP+  T    L +CA +G   +G ++   +      
Sbjct: 332 AGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDME 391

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S+ F++  L++MY++C  L+ AR  F+ +P K +++W AII GY  +     A+ LF EM
Sbjct: 392 SDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEM 451

Query: 241 LKSGIRPDGTAFVSVLSACS-----HAGLTDKGLEYFYG----------MKNKYGLQPGP 285
            K GI  + T   ++L + +     H      GL    G          + + YG     
Sbjct: 452 HKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHV 511

Query: 286 E---------------HYTCMVDLLGRAGQLNEALEL---IESMLVEPDGAVWGALLGAC 327
           E                +T M+    + GQ  EAL+L   ++ M ++PD  V  +LL AC
Sbjct: 512 EDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNAC 571

Query: 328 KIHKNVELAELAFGKVIKLEPMNTGYYV------LLSNIYSEARNLDGIMRVRMMMRER 380
                  L+    GK + +  +  G+ +       L N+Y++  ++D   R    + ER
Sbjct: 572 -----ANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTER 625



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 3/141 (2%)

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           +  ++Q+   T +L L   +      P +V++  +LS C    +   GL++   I  +G 
Sbjct: 31  VPQFSQDPQTTAILNL---IDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGL 87

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             +P + N LIN+Y++C N   AR + D      +VSW+A+I GY  +G G  A+  F E
Sbjct: 88  SDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHE 147

Query: 240 MLKSGIRPDGTAFVSVLSACS 260
           M   G++ +   F SVL ACS
Sbjct: 148 MHLLGVKCNEFTFSSVLKACS 168


>gi|357136551|ref|XP_003569867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Brachypodium distachyon]
          Length = 580

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/508 (43%), Positives = 309/508 (60%), Gaps = 6/508 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +++L        L   A++ +  +    +  +S     +   C D   L  GM  H   +
Sbjct: 73  FSSLARAATHQGLPLAALAFYRCLLSAALPFSSFAFTAVAKACADLSALRTGMTVHAHSI 132

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             G   D  V   L+ +Y KCG +   RKLFD + +K ++ WNAMISGY QNGLA   +E
Sbjct: 133 LLGFGSDRFVLTALVVLYSKCGRLPVARKLFDAIRDKNVVAWNAMISGYEQNGLAEQGIE 192

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           +Y+EMK     PD++TFV  LS+CA  GA  +G EVE++I +     + FL +AL+NMYA
Sbjct: 193 VYKEMKVAKAVPDSMTFVATLSACAQAGALDLGREVERRIVSERMDISVFLGSALVNMYA 252

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           RCG + KAR  FD +  + VV+WT++I GYG+HGHG  A++L+  M   G  P+   FV+
Sbjct: 253 RCGVVDKARQWFDVLQERNVVTWTSMIAGYGMHGHGHEAIKLYHLMRCKGPPPNDVTFVA 312

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI-ESMLV 313
           VLSAC+HAGL  +G + F  MK  YGL P  EHY  MVD+ GRAG+L EA++ I +SM  
Sbjct: 313 VLSACAHAGLITEGRDAFACMKRVYGLAPRVEHYCSMVDMYGRAGRLEEAMQFIRDSMPG 372

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
           +P   VW A+LGACK+HKN  L      ++I+LEP N  Y+VLLSNIY+ +  +  + +V
Sbjct: 373 DPGPEVWTAILGACKMHKNFSLGVEVAERLIRLEPENPSYHVLLSNIYALSGKMYHVEKV 432

Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH----DG 429
           R  M +RRLKK  GYS +EL G  HLF +G+++H +T EIY+ L++L + +       + 
Sbjct: 433 RNTMIKRRLKKQIGYSLIELGGTSHLFRMGEKSHQKTREIYQYLEELVHRISAAGYMPET 492

Query: 430 TKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTS-PGTEIVVMKNLRICGDCHLFIKLVSK 488
                +   EE       HSEKLA+A+G++ ++   T + V+KNLRIC DCHL IK +S 
Sbjct: 493 ESVLHELEEEEREGALRYHSEKLAVAYGLMMSAGSTTPLRVIKNLRICSDCHLAIKFMSA 552

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           + +R+ IVRD  RFHHFK G CSC +YW
Sbjct: 553 VENREIIVRDKHRFHHFKDGKCSCLEYW 580



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 137/249 (55%), Gaps = 7/249 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+ISGY  N L  + + ++ +M+      +S+T +  L  C   G L LG      
Sbjct: 172 VAWNAMISGYEQNGLAEQGIEVYKEMKVAKAVPDSMTFVATLSACAQAGALDLGREVERR 231

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            V   +D+   +G+ L+ MY +CG VD  R+ FD + E+ ++TW +MI+GY  +G     
Sbjct: 232 IVSERMDISVFLGSALVNMYARCGVVDKARQWFDVLQERNVVTWTSMIAGYGMHGHGHEA 291

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           ++LY  M+  G  P+ VTFV VLS+CAH G  + G +    ++   +G  P + +  +++
Sbjct: 292 IKLYHLMRCKGPPPNDVTFVAVLSACAHAGLITEGRDAFACMK-RVYGLAPRVEHYCSMV 350

Query: 191 NMYARCGNLKKA-RAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           +MY R G L++A + I D MP       WTAI+G   +H +  + V++ + +++  + P+
Sbjct: 351 DMYGRAGRLEEAMQFIRDSMPGDPGPEVWTAILGACKMHKNFSLGVEVAERLIR--LEPE 408

Query: 249 GTAFVSVLS 257
             ++  +LS
Sbjct: 409 NPSYHVLLS 417



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 108/225 (48%), Gaps = 8/225 (3%)

Query: 109 PEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGL 168
           P      ++++       GL    L  YR + S  +   +  F  V  +CA L A   G+
Sbjct: 66  PASDSFLFSSLARAATHQGLPLAALAFYRCLLSAALPFSSFAFTAVAKACADLSALRTGM 125

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
            V       GFGS+ F+  AL+ +Y++CG L  AR +FD +  K VV+W A+I GY  +G
Sbjct: 126 TVHAHSILLGFGSDRFVLTALVVLYSKCGRLPVARKLFDAIRDKNVVAWNAMISGYEQNG 185

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEY---FYGMKNKYGLQPGP 285
             E  ++++ EM  +   PD   FV+ LSAC+ AG  D G E        +    +  G 
Sbjct: 186 LAEQGIEVYKEMKVAKAVPDSMTFVATLSACAQAGALDLGREVERRIVSERMDISVFLG- 244

Query: 286 EHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
              + +V++  R G +++A +  + +L E +   W +++    +H
Sbjct: 245 ---SALVNMYARCGVVDKARQWFD-VLQERNVVTWTSMIAGYGMH 285


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 204/509 (40%), Positives = 324/509 (63%), Gaps = 41/509 (8%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NA+ISG + N   ++A+ +  +MR +G+++N VT++ +LP+ VD               
Sbjct: 184 WNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVD--------------- 228

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
                           MY K G +D   K+F+ +P K +I+WN +I+GYAQNGLA+  +E
Sbjct: 229 ----------------MYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIE 272

Query: 135 LYREMKSLG-VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
           +Y+ M+    + P+  T+V +L + AH+GA   G+++  ++       + F+   LI++Y
Sbjct: 273 VYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVY 332

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
            +CG L  A ++F  +P+++ V+W AII  +GIHGH E  ++LF EML  G++PD   FV
Sbjct: 333 GKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFV 392

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           S+LSACSH+G  ++G ++ + +  +YG++P  +HY CMVDLLGRAG L  A + I+ M +
Sbjct: 393 SLLSACSHSGFVEEG-KWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPL 451

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
           +PD ++WGALLGAC+IH N+EL + A  ++ +++  N GYYVLLSNIY+     +G+ +V
Sbjct: 452 QPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKV 511

Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD----KLENL--VQEH 427
           R + RER LKK PG+S +E+  +V +F  G+++H +  EIY  L     K+++L  + ++
Sbjct: 512 RSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDY 571

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
               +  +++ +EH+  +  HSE+LAIAFGII+T P + I + KNLR+CGDCH   K +S
Sbjct: 572 SFVLQDVEEDEKEHILTS--HSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFIS 629

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +I  R+ +VRD+ RFHHFK G CSC DYW
Sbjct: 630 RITQREIVVRDSNRFHHFKDGICSCGDYW 658



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/234 (35%), Positives = 122/234 (52%), Gaps = 4/234 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEI--NSVTMLCLLPICVDPGYLWLGMCC 69
            + +N LI+GY  N L SEA+ ++ KM E+  EI  N  T + +LP     G L  GM  
Sbjct: 251 VISWNTLITGYAQNGLASEAIEVY-KMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKI 309

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   +K  L LD  V  CL+ +Y KCG +     LF QVP++  +TWNA+IS +  +G A
Sbjct: 310 HGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHA 369

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              L+L+ EM   GV PD VTFV +LS+C+H G    G    + +Q  G   +      +
Sbjct: 370 EKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCM 429

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFDEMLK 242
           +++  R G L+ A      MP +   S W A++G   IHG+ E+     D + +
Sbjct: 430 VDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFE 483



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 132/287 (45%), Gaps = 17/287 (5%)

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
           C H + V  G      +   L+ +Y   G V   R  FDQ+P+K +  WN+MIS Y  NG
Sbjct: 37  CLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNG 96

Query: 128 LATHVLELYREMKSLG-VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
                +  + ++  +  + PD  TF  VL +C   G    G ++       GF  N F+ 
Sbjct: 97  HFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQWNVFVA 153

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
            +LI+MY+R G    AR++FD MP + + SW A+I G   +G+   A+ + DEM   GI+
Sbjct: 154 ASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIK 213

Query: 247 PDGTAFVSVLSAC----SHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
            +    VS+L       +  GL D   + F  +  K  +      +  ++    + G  +
Sbjct: 214 MNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVIS-----WNTLITGYAQNGLAS 268

Query: 303 EALELIESM----LVEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345
           EA+E+ + M     + P+   W ++L A      ++      G+VIK
Sbjct: 269 EAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIK 315


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/517 (43%), Positives = 317/517 (61%), Gaps = 13/517 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +IS +  +   SEA++ F  M  +GVE++ VT+  +LP C     L +G   H  
Sbjct: 180 VSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAY 239

Query: 73  CVKFGLDLDFS-VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
            ++    ++ S VG+ L+ MY  C  V+ GR++FD +  + +  WNAMISGYA+NGL   
Sbjct: 240 VLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEK 299

Query: 132 VLELYREM-KSLGVCPDAVTFVGVLSSCAH-LGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
            L L+ EM K  G+ P+  T   V+ +C H L A + G E+      N   S+  + +AL
Sbjct: 300 ALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSAL 359

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR--- 246
           ++MYA+CG L  +R +F+ MP K V++W  +I   G+HG GE A++LF  M+    R   
Sbjct: 360 VDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGE 419

Query: 247 --PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
             P+   F++V +ACSH+GL  +GL  FY MK+ +G++P  +HY C+VDLLGRAGQL EA
Sbjct: 420 AKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEA 479

Query: 305 LELIESMLVEPDG-AVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE 363
            EL+ +M  E D    W +LLGAC+IH+NVEL E+A   ++ LEP    +YVLLSNIYS 
Sbjct: 480 YELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSS 539

Query: 364 ARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENL 423
           A   +  M VR  MR+  +KK+PG S++E +  VH FM GD +H Q+ +++  L+ L   
Sbjct: 540 AGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEK 599

Query: 424 VQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDC 479
           +++     D +      + +E  N    HSEKLAIAFGI+NT PGT I V KNLR+C DC
Sbjct: 600 MRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDC 659

Query: 480 HLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           H   K +SKI++R+ IVRD  RFHHFK G CSC DYW
Sbjct: 660 HAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 696



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 159/343 (46%), Gaps = 34/343 (9%)

Query: 30  EAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGL----------- 78
           EA+S + +M   G   ++     +L        L  G   H   VKFG            
Sbjct: 75  EAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTL 134

Query: 79  -----------DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
                      D  F+  N LM MY K G VD  + LF+   ++ +++WN MIS ++Q+ 
Sbjct: 135 VNMYGKCGGIGDKTFT-NNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSD 193

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI-QANGFGSNPFLN 186
             +  L  +R M   GV  D VT   VL +C+HL    VG E+   + + N    N F+ 
Sbjct: 194 RFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVG 253

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK-SGI 245
           +AL++MY  C  ++  R +FD +  + +  W A+I GY  +G  E A+ LF EM+K +G+
Sbjct: 254 SALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGL 313

Query: 246 RPDGTAFVSVLSACSHA-GLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
            P+ T   SV+ AC H+     KG E + Y ++N   L       + +VD+  + G LN 
Sbjct: 314 LPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNM--LASDITVGSALVDMYAKCGCLNL 371

Query: 304 ALELIESMLVEPDGAV--WGALLGACKIHKNVELAELAFGKVI 344
           +  +   M   P+  V  W  L+ AC +H   E A   F  ++
Sbjct: 372 SRRVFNEM---PNKNVITWNVLIMACGMHGKGEEALELFKNMV 411



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 78/191 (40%), Gaps = 22/191 (11%)

Query: 109 PEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGL 168
           P +   +W   +    ++      +  Y EM   G  PD   F  VL + + L     G 
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 169 EVEQQIQANGFGSNP---------------------FLNNALINMYARCGNLKKARAIFD 207
           ++       G+GS+                      F NNAL+ MYA+ G +  ++A+F+
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFE 172

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
               + +VSW  +I  +        A+  F  M+  G+  DG    SVL ACSH    D 
Sbjct: 173 SFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDV 232

Query: 268 GLE-YFYGMKN 277
           G E + Y ++N
Sbjct: 233 GKEIHAYVLRN 243


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/508 (41%), Positives = 306/508 (60%), Gaps = 4/508 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+I+G + ++ + E   LF +M+E+ +  N +TML L+  C   G L LG   H  
Sbjct: 264 VSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAY 323

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ G  +  ++   L+ MY KC  +   R LFD    + ++ W AM+S YAQ       
Sbjct: 324 ILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQA 383

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
             L+ +M++ GV P  VT V +LS CA  GA  +G  V   I       +  LN AL++M
Sbjct: 384 FNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDM 443

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG++  A  +F     + +  W AII G+ +HG+GE A+ +F EM + G++P+   F
Sbjct: 444 YAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITF 503

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + +L ACSHAGL  +G + F  M + +GL P  EHY CMVDLLGRAG L+EA E+I+SM 
Sbjct: 504 IGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMP 563

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           ++P+  VWGAL+ AC++HKN +L ELA  +++++EP N GY VL+SNIY+ A        
Sbjct: 564 IKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAG 623

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH----D 428
           VR  M+   +KK+PG+S +E+ G VH F++GD++H Q   I  ML ++   + E     D
Sbjct: 624 VRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPD 683

Query: 429 GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
            +      + EE       HSEKLA+AFG+I+T+P T I ++KNLR+C DCH   KL+SK
Sbjct: 684 TSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSK 743

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           I  R  IVRD  RFHHF+ G+CSC DYW
Sbjct: 744 IYGRVIIVRDRNRFHHFREGYCSCGDYW 771



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 166/333 (49%), Gaps = 8/333 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+ ++     V ++ +I     N     A+ L  +M    V  + V M+ ++ +  D 
Sbjct: 151 VFDKMMERD--VVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADT 208

Query: 61  GYLWLGMCCHCICVKFGLD--LDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
             + +G   H   ++   +  +       L+ MY KCG +   R+LF+ + +K +++W A
Sbjct: 209 ANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTA 268

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           MI+G  ++       +L+  M+   + P+ +T + ++  C   GA  +G ++   I  NG
Sbjct: 269 MIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNG 328

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
           F  +  L  AL++MY +C +++ ARA+FD    + V+ WTA++  Y      + A  LFD
Sbjct: 329 FSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFD 388

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
           +M  SG+RP     VS+LS C+ AG  D G ++ +   +K  ++      T +VD+  + 
Sbjct: 389 QMRTSGVRPTKVTIVSLLSLCAVAGALDLG-KWVHSYIDKERVEVDCILNTALVDMYAKC 447

Query: 299 GQLNEALEL-IESMLVEPDGAVWGALLGACKIH 330
           G +N A  L IE+  +  D  +W A++    +H
Sbjct: 448 GDINAAGRLFIEA--ISRDICMWNAIITGFAMH 478



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/277 (31%), Positives = 139/277 (50%), Gaps = 6/277 (2%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           +L  C    +  LG   H   +K GLD D  VGN LM MY +C  V+Y R +FD++ E+ 
Sbjct: 100 VLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERD 159

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
           +++W+ MI   ++N      LEL REM  + V P  V  V +++  A      +G  +  
Sbjct: 160 VVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHA 219

Query: 173 QIQANGFGSNPFL--NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHG 230
            +  N    +  +    AL++MYA+CG+L  AR +F+G+ +KTVVSWTA+I G       
Sbjct: 220 YVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRL 279

Query: 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYT 289
           E   +LF  M +  I P+    +S++  C   G    G + + Y ++N + +       T
Sbjct: 280 EEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALA--T 337

Query: 290 CMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
            +VD+ G+   +  A  L +S     D  +W A+L A
Sbjct: 338 ALVDMYGKCSDIRNARALFDST-QNRDVMIWTAMLSA 373


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/515 (41%), Positives = 310/515 (60%), Gaps = 18/515 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC--CH 70
           + +N++ISGY       EA+SLF  M ++G+E N  T+  +L      G    G C   H
Sbjct: 356 IVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTA--GSQANGFCEQVH 413

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
            I +K G   D  V N L+  Y KC  ++   K+F+  P + L+ + +MI+ Y+Q GL  
Sbjct: 414 TISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGE 473

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             L++Y  M+   + PDA  F  + ++CA+L A+  G ++   +   G  S+ F  N+L+
Sbjct: 474 EALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLV 533

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           NMYA+CG++  A  IF+ +  + +VSW+A+IGG   HGHG  A+QLF +MLK+GI P+  
Sbjct: 534 NMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHI 593

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
             VSVLSAC+HAGL  +   +F  M+  +G+ P  EHY CMVD+LGR G+L+EA+ L++ 
Sbjct: 594 TLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKE 653

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M  +   AVWGALLGA +IHKN+EL   A   ++ LEP  +G ++LL+NIY+     D +
Sbjct: 654 MPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIYASTGMWDNV 713

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
            +VR  M+   +KK+PG S++ELK +V+ F+VGDR+H ++ EIY  LD L   +     T
Sbjct: 714 AKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSHPRSKEIYVKLDDLRERL-----T 768

Query: 431 KRSDQKNSEEHLNDTEV---------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHL 481
                   E  L+D E          HSEKLA+AFG+I T PG  I V KNLR+C DCH 
Sbjct: 769 SAGYVPMIETDLHDVEQIEKEQLLWHHSEKLAVAFGLIATPPGAPIRVKKNLRVCIDCHT 828

Query: 482 FIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
             K +SK+  R+ IVRD  RFHHF+ G CSC DYW
Sbjct: 829 AFKFISKVASREIIVRDINRFHHFRDGSCSCGDYW 863



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 180/368 (48%), Gaps = 11/368 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+I+G VL+     A+ L GKM    V  +  T+   L  C   G + LG   H  
Sbjct: 255 VSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSA 314

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K  ++ D  VG  L+ MY KCG +   R +FD +P K +I WN++ISGY+  G     
Sbjct: 315 LMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEA 374

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + L+  M   G+  +  T   +L S A   A+    +V      +G+  + ++ N+L++ 
Sbjct: 375 MSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDS 434

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +C  L+ A  +F+  P + +V++T++I  Y  +G GE A++++  M    I+PD   F
Sbjct: 435 YGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIF 494

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S+ +AC++    ++G +    +  K GL         +V++  + G +++A  +     
Sbjct: 495 SSLFNACANLSAYEQGKQIHVHVL-KCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNE-- 551

Query: 313 VEPDGAV-WGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS-----NIYSEA 364
           +   G V W A++G    H +   A   F +++K  + P +     +LS      + +EA
Sbjct: 552 ISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEA 611

Query: 365 RNLDGIMR 372
           R   G+M 
Sbjct: 612 RRFFGLME 619



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 166/372 (44%), Gaps = 57/372 (15%)

Query: 32  VSLFGKMREQGVEINSVTMLCLLPICV---DPGYLWLGMCCHCICVKFGLDLDFSVGNCL 88
           V+L  +M   G+  N  ++  +L  C    D  Y   GM  H   +K G D D    N L
Sbjct: 173 VALVTEMISTGISPNEFSLSTVLNACAGLEDENY---GMKVHGYLIKLGYDSDPFSANAL 229

Query: 89  MTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISG---YAQNGLATHVLELYREMKSLGVC 145
           + MY K G  +    +F ++P+  +++WNA+I+G   + +N LA   L+L  +M S  V 
Sbjct: 230 LDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLA---LKLLGKMGSYRVA 286

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P   T    L +CA +G   +G ++   +       + F+   LI+MY++CG L+ AR +
Sbjct: 287 PSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMV 346

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           FD MP K V+ W +II GY   G+   A+ LF  M K G+  + T   ++L   S AG  
Sbjct: 347 FDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILK--STAGSQ 404

Query: 266 DKGL-EYFYGMKNKYGLQ-----------------------------PGPE--HYTCMVD 293
             G  E  + +  K G Q                             P  +   YT M+ 
Sbjct: 405 ANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMIT 464

Query: 294 LLGRAGQLNEALELIESML---VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN 350
              + G   EAL++   M    ++PD  ++ +L  AC       L+    GK I +  + 
Sbjct: 465 AYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNAC-----ANLSAYEQGKQIHVHVLK 519

Query: 351 TGYYVLLSNIYS 362
            G   LLS++++
Sbjct: 520 CG---LLSDVFA 528



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 124/276 (44%), Gaps = 42/276 (15%)

Query: 89  MTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA------------------- 129
           + +Y KC      RKL     E  L++W+A+ISGY QNG                     
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 130 ---------------------THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGL 168
                                 H + L  EM S G+ P+  +   VL++CA L   + G+
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
           +V   +   G+ S+PF  NAL++MYA+ G  + A A+F  +P+  +VSW A+I G  +H 
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHE 268

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY 288
             ++A++L  +M    + P      S L AC+  GL   G +    +  K  ++P     
Sbjct: 269 KNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALM-KMDMEPDSFVG 327

Query: 289 TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
             ++D+  + G L +A  ++  ++   D  VW +++
Sbjct: 328 VGLIDMYSKCGLLQDA-RMVFDLMPXKDVIVWNSII 362


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/536 (40%), Positives = 318/536 (59%), Gaps = 39/536 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  LI+G++ +   +E+V LF +MR + + ++   +  L+  C     L LG   H +
Sbjct: 337 VAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSL 396

Query: 73  CVKFGLDLDFSVGNCLMTMYVKC-------------------------------GSVDYG 101
           C+K G      V N L++MY KC                               G++   
Sbjct: 397 CLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKA 456

Query: 102 RKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKS-LGVCPDAVTFVGVLSSCAH 160
           R+ FD +  K +ITWNAM+  Y Q+G     L +Y  M S   V PD VT+V +   CA 
Sbjct: 457 REFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCAD 516

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           LGA+ +G ++  +    G   +  + NA+I MY++CG + +AR +FD +  K +VSW A+
Sbjct: 517 LGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAM 576

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           I GY  HG G+ A+++FD++LK G +PD  ++V+VLS CSH+GL  +G  YF  MK  + 
Sbjct: 577 ITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHN 636

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           + PG EH++CMVDLLGRAG L EA +LI+ M ++P   VWGALL ACKIH N ELAELA 
Sbjct: 637 ISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAA 696

Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400
             V +L+  ++G Y+L++ IY++A   D   ++R +MR++ +KK+PGYS++E+  +VH+F
Sbjct: 697 KHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVNNKVHVF 756

Query: 401 MVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIIN 460
              D +H Q + I + LD+L   +    G  R+D   SE H      HSEKLA+AFG+++
Sbjct: 757 KADDVSHPQVIAIRKKLDELMEKIARL-GYVRTDSPRSEIH------HSEKLAVAFGLMS 809

Query: 461 TSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
                 I +MKNLRICGDCH  IKL+S +  R+F++RDA RFHHF  G CSC DYW
Sbjct: 810 LPAWMPIHIMKNLRICGDCHTVIKLISSVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 104/431 (24%), Positives = 187/431 (43%), Gaps = 43/431 (9%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N ++S    +  V EA+ +   M+ +GV ++S T    L  C     L  G   H  
Sbjct: 236 VSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQ 295

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++    +D  V + L+ +Y KCG     + +F+ + ++  + W  +I+G+ Q+G  T  
Sbjct: 296 VIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTES 355

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           +EL+ +M++  +  D      ++S C       +G ++      +G      ++N+LI+M
Sbjct: 356 VELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISM 415

Query: 193 YARC-------------------------------GNLKKARAIFDGMPRKTVVSWTAII 221
           YA+C                               GN+ KAR  FDGM  K V++W A++
Sbjct: 416 YAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAML 475

Query: 222 GGYGIHGHGEVAVQLFDEML-KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           G Y  HG  E  +++++ ML +  +RPD   +V++   C+  G    G +   G   K G
Sbjct: 476 GAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLG-DQIIGRTVKVG 534

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           L         ++ +  + G++ EA ++ + + V+ D   W A++     H   + A   F
Sbjct: 535 LILDTSVANAVITMYSKCGRILEARKVFDFLNVK-DIVSWNAMITGYSQHGMGKQAIEIF 593

Query: 341 GKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSY----VELK 394
             ++K   +P    Y  +LS         +G     MM R   +   PG  +    V+L 
Sbjct: 594 DDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNIS--PGLEHFSCMVDLL 651

Query: 395 GRV-HLFMVGD 404
           GR  HL    D
Sbjct: 652 GRAGHLTEAKD 662



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 107/439 (24%), Positives = 194/439 (44%), Gaps = 40/439 (9%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +N L+SGY  +     ++  F  M   G    N+ T    +  C   G   L +    + 
Sbjct: 105 WNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMV 164

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLF---------------------------- 105
            KFG   D  V   L+ M+V+CG+VD   +LF                            
Sbjct: 165 QKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHAL 224

Query: 106 ---DQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162
              D +PE+ +++WN M+S  +Q+G     L++  +M+S GV  D+ T+   L++CA L 
Sbjct: 225 ELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLS 284

Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIG 222
           +   G ++  Q+  N    +P++ +AL+ +YA+CG  K+A+ +F+ +  +  V+WT +I 
Sbjct: 285 SLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIA 344

Query: 223 GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQ 282
           G+  HG    +V+LF++M    +  D  A  +++S C        G +  + +  K G  
Sbjct: 345 GFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQ-LHSLCLKSGQI 403

Query: 283 PGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGK 342
                   ++ +  +   L  A E I   + E D   W +++ A     N+  A   F  
Sbjct: 404 QAVVVSNSLISMYAKCDNLQSA-ESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDG 462

Query: 343 VIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVEL-KGRVHLFM 401
           +     +   +  +L          DG+    +M+ E+ ++ D   +YV L KG   L  
Sbjct: 463 MSTKNVIT--WNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPD-WVTYVTLFKGCADLGA 519

Query: 402 --VGDRNHHQTVEIYRMLD 418
             +GD+   +TV++  +LD
Sbjct: 520 NKLGDQIIGRTVKVGLILD 538



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 117/273 (42%), Gaps = 36/273 (13%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG-V 144
           N ++  YVK G +    +LF ++P + + +WN ++SGY Q+      LE +  M   G  
Sbjct: 75  NVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDS 134

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR- 203
            P+A TF   + SC  LG  S+ L++   +Q  G   +  +  AL++M+ RCG +  A  
Sbjct: 135 SPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASR 194

Query: 204 ------------------------------AIFDGMPRKTVVSWTAIIGGYGIHGHGEVA 233
                                          +FD MP + VVSW  ++      G    A
Sbjct: 195 LFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREA 254

Query: 234 VQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMV 292
           + +  +M   G+R D T + S L+AC+       G + +   ++N   + P     + +V
Sbjct: 255 LDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVA--SALV 312

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           +L  + G   EA  +  S L + +   W  L+ 
Sbjct: 313 ELYAKCGCFKEAKGVFNS-LHDRNNVAWTVLIA 344



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 2/128 (1%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           N   +N ++N Y + G L  A  +F  MP + V SW  ++ GY        +++ F  M 
Sbjct: 70  NVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMH 129

Query: 242 KSG-IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           +SG   P+   F   + +C   G     L+   GM  K+G Q   +    +VD+  R G 
Sbjct: 130 RSGDSSPNAFTFAYAMKSCGALGERSLALQ-LLGMVQKFGSQDDSDVAAALVDMFVRCGT 188

Query: 301 LNEALELI 308
           ++ A  L 
Sbjct: 189 VDLASRLF 196


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/520 (40%), Positives = 315/520 (60%), Gaps = 4/520 (0%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+  +     + +N +I  Y  N L  EA+ LF  M  +GV  N VT++  +  C   
Sbjct: 81  VFDQIQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASL 140

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
                G   H I V   L+ D  VG  L+ M+ KC +VD  R +FD +P K L+TWN M+
Sbjct: 141 PSEEEGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMV 200

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           + Y+QN      ++++R M   GV PDAVTF+ ++ +CA L AH+ G  V   I A+G  
Sbjct: 201 AVYSQNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIP 260

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            +  L  A+++ Y +CG L  ARAIFD + +K  V+W+AI+  Y  +G+   A++L+ EM
Sbjct: 261 MDVALGTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEM 320

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           ++ G+  +G  F+ +L ACSHAG +  G++YF  M   +G+ P  EHY  ++DLLGR+GQ
Sbjct: 321 VQGGLEVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDFGVVPVFEHYLNLIDLLGRSGQ 380

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L  + +LI SM  EPD + W ALLGAC++H +V+        + +L+P ++G Y+LLSN+
Sbjct: 381 LQLSEDLINSMPYEPDSSAWLALLGACRMHGDVDRGARIAELIYELDPEDSGPYILLSNL 440

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           YS    +D   R R  MR R + K PG S +E+K RVH FM   + H Q   I+  +++L
Sbjct: 441 YSSTGRMDEARRTRKAMRLRGITKQPGLSSIEVKDRVHEFMAAQKLHPQLGRIHAEIERL 500

Query: 421 ENLVQE--HDGTKRSDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
           +  V+E  +    R+  ++ EE   +  +  HSE+LAIAFG+I+T PGT + ++KNLR+C
Sbjct: 501 KARVKEAGYVADVRAVLRDVEEEEKEQLLWYHSERLAIAFGLISTPPGTALHIVKNLRVC 560

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DCH  +K +SK+V R+ +VRDA RFHHF++G CSC DYW
Sbjct: 561 FDCHAAVKAISKVVGRKIVVRDAIRFHHFENGACSCGDYW 600



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 163/336 (48%), Gaps = 8/336 (2%)

Query: 49  TMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV 108
           T + LL  C D   L  G   H   VK G   D  + N L+ MY KCG +   R +FDQ+
Sbjct: 26  TYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARSVFDQI 85

Query: 109 PEKG--LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSV 166
            EK   +I+WN +I  Y QNGL    L L++ M   GV  + VT +  + +CA L +   
Sbjct: 86  QEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSEEE 145

Query: 167 GLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGI 226
           G  V          S+  +  +L+NM+ +C N+  ARA+FD +PRK +V+W  ++  Y  
Sbjct: 146 GRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVYSQ 205

Query: 227 HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPE 286
           +   + A+Q+F  M   G++PD   F++++ AC+      +G    +      G+     
Sbjct: 206 NWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEG-RMVHDDITASGIPMDVA 264

Query: 287 HYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA-CKIHKNVELAELAFGKVIK 345
             T ++   G+ G+L+ A  + +S L + +   W A+L A  +     E  EL + ++++
Sbjct: 265 LGTAVMHFYGKCGRLDNARAIFDS-LGKKNTVTWSAILAAYAQNGYETEAIEL-YHEMVQ 322

Query: 346 --LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379
             LE     +  LL       R++DG+     M+R+
Sbjct: 323 GGLEVNGITFLGLLFACSHAGRSMDGVDYFVSMIRD 358


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/527 (42%), Positives = 315/527 (59%), Gaps = 28/527 (5%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD- 59
           +F+ES      T  + A++SGYV N ++ EA  +F  M E+    NSV+   ++   V  
Sbjct: 257 LFEESPVRDVFT--WTAMVSGYVQNGMLDEARRVFDGMPEK----NSVSWNAIIAGYVQC 310

Query: 60  -----PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLI 114
                   L+  M C  +          S  N ++T Y + G +   R  FD++P++  I
Sbjct: 311 KRMDQARELFEAMPCQNV----------SSWNTMITGYAQNGDIAQARNFFDRMPQRDSI 360

Query: 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
           +W A+I+GYAQ+G     L L+ EMK  G   +  TF   LS+CA + A  +G +V  ++
Sbjct: 361 SWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRV 420

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
              G  S  ++ NAL+ MY +CGN+  A  +F+G+  K VVSW  +I GY  HG G+ A+
Sbjct: 421 VKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEAL 480

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
            LF+ M K+GI PD    V VLSACSH GL DKG EYFY M   YG+    +HYTCM+DL
Sbjct: 481 MLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDL 540

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           LGRAG+L++A  L+++M  EPD A WGALLGA +IH N EL E A   + ++EP N+G Y
Sbjct: 541 LGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMY 600

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
           VLLSN+Y+ +     + R+R+ MR+R +KK PGYS+VE++ ++H F VGD  H +   IY
Sbjct: 601 VLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIY 660

Query: 415 RMLDKLENLVQEHDGTKRSDQ-----KNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVV 469
             L++L+ L  + +G   S +        EE ++  + HSEKLA+AFGI+    G  I V
Sbjct: 661 TFLEELD-LKMKKEGYVSSTKLVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRV 719

Query: 470 MKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +KNLR+C DCH  +K +SKIV R  I+RD+ RFHHF  G CSC DYW
Sbjct: 720 IKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCGDYW 766



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 159/339 (46%), Gaps = 28/339 (8%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +N  I+ ++ N     A+ LF  M R   +  N++   CL     D  YL        
Sbjct: 50  VKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCL---SNDKFYL-----ARQ 101

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           +  K     D    N +++  V+  ++   R LFDQ+PE+ +++WNAM+SGYAQNG    
Sbjct: 102 LFEKMPTR-DLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKE 160

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
             E++ EM     C +++++ G+L++    G     +E  +++  +         N ++ 
Sbjct: 161 AKEIFDEMP----CKNSISWNGMLAAYVQNGR----IEDARRLFESKADWELISWNCMMG 212

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
            Y +   L  AR IFD MP +  VSW  +I GY  +G    A +LF+E   S +R D   
Sbjct: 213 GYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEE---SPVR-DVFT 268

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           + +++S     G+ D+    F GM  K  +      +  ++    +  ++++A EL E+M
Sbjct: 269 WTAMVSGYVQNGMLDEARRVFDGMPEKNSVS-----WNAIIAGYVQCKRMDQARELFEAM 323

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN 350
             + + + W  ++     + ++  A   F ++ + + ++
Sbjct: 324 PCQ-NVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSIS 361



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 39/165 (23%)

Query: 76  FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLEL 135
              D D    N  +T +++ G  D   +LF+ +P +  I+WNAMISG   N       +L
Sbjct: 43  LATDADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQL 102

Query: 136 YREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR 195
           + +M +     D V++  ++S C                                    R
Sbjct: 103 FEKMPT----RDLVSWNVMISGC-----------------------------------VR 123

Query: 196 CGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
             NL+ AR +FD MP + VVSW A++ GY  +G+ + A ++FDEM
Sbjct: 124 YRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM 168


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/520 (40%), Positives = 329/520 (63%), Gaps = 7/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+    T   V + ++ISGYV N    EA+++F +MR+  V+ + + ++ ++    + 
Sbjct: 142 VFDKLHDRT--VVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNV 199

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H +  K GL+ +  +   L TMY K G V+  R  F+++ +  LI WNAMI
Sbjct: 200 EDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMI 259

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGYA NG     ++L+REM +  +  D++T    + + A +G+  +   ++  I  + + 
Sbjct: 260 SGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYR 319

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            + F+N  LI+MYA+CG++  AR +FD +  K VV W+ +I GYG+HGHG+ A+ L++EM
Sbjct: 320 DDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEM 379

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            ++G+ P+   F+ +L+AC ++GL  +G E F+ M + +G++P  +HY+C+VDLLGRAG 
Sbjct: 380 KQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPD-HGIEPHHQHYSCVVDLLGRAGY 438

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           LN+A + I SM ++P  +VWGALL ACKIH+ V L E+A  ++  L+P NTG+YV LSN+
Sbjct: 439 LNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNL 498

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+ A     +  VR+MM ++ L KD G+S +E+ G +  F VGDR+H ++ EI+  LD+L
Sbjct: 499 YASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRL 558

Query: 421 ENLVQEHDGTKRSDQK----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
           E  ++        +      N EE       HSE+LA+A+GII+T+PGT + + KNLR C
Sbjct: 559 EKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRAC 618

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +CH  IKL+SK+VDR+ I+RDA RFHHFK G CSC D+W
Sbjct: 619 INCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 658



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 154/316 (48%), Gaps = 2/316 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NA+I GY   ++V   + ++  M+   V  N  T L +L  C       +G   H    
Sbjct: 53  WNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTF 112

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K+G   +  V N L++MY K G + Y R +FD++ ++ +++W ++ISGY QNG     L 
Sbjct: 113 KYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALN 172

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           +++EM+   V PD +  V V+++  ++     G  +   +   G    P +  +L  MYA
Sbjct: 173 VFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYA 232

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           + G ++ AR  F+ M +  ++ W A+I GY  +G+GE A++LF EM+   IR D     S
Sbjct: 233 KRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRS 292

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
            + A +  G  +    +  G  +K   +      T ++D+  + G +  A   +   + +
Sbjct: 293 AVLASAQVGSLELA-RWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLA-RCVFDRVAD 350

Query: 315 PDGAVWGALLGACKIH 330
            D  +W  ++    +H
Sbjct: 351 KDVVLWSVMIMGYGLH 366



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 127/229 (55%), Gaps = 2/229 (0%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
           G V+Y  K F +V E  ++ WNA+I GY Q  +    + +Y +M+   V P+  TF+ VL
Sbjct: 33  GDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVL 92

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
            +C       +G ++  Q    GFGSN F+ N+L++MYA+ G +  AR +FD +  +TVV
Sbjct: 93  KACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVV 152

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           SWT+II GY  +G    A+ +F EM +  ++PD  A VSV++A ++     +G +  +G+
Sbjct: 153 SWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQG-KSIHGL 211

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
             K GL+  P+    +  +  + G L E      + + +P+  +W A++
Sbjct: 212 VTKLGLEFEPDIVISLTTMYAKRG-LVEVARFFFNRMEKPNLILWNAMI 259



 Score = 46.6 bits (109), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 1/136 (0%)

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
           +V  Q+  +G     FL    IN     G++  A   F  +    ++ W AII GY    
Sbjct: 5   QVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKN 64

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY 288
             +  ++++ +M  S + P+   F+ VL AC    +   G +  +G   KYG        
Sbjct: 65  IVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQ-IHGQTFKYGFGSNVFVQ 123

Query: 289 TCMVDLLGRAGQLNEA 304
             +V +  + GQ++ A
Sbjct: 124 NSLVSMYAKFGQISYA 139


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/520 (40%), Positives = 329/520 (63%), Gaps = 7/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+    T   V + ++ISGYV N    EA+++F +MR+  V+ + + ++ ++    + 
Sbjct: 157 VFDKLHDRT--VVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNV 214

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H +  K GL+ +  +   L TMY K G V+  R  F+++ +  LI WNAMI
Sbjct: 215 EDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMI 274

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGYA NG     ++L+REM +  +  D++T    + + A +G+  +   ++  I  + + 
Sbjct: 275 SGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYR 334

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            + F+N  LI+MYA+CG++  AR +FD +  K VV W+ +I GYG+HGHG+ A+ L++EM
Sbjct: 335 DDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEM 394

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            ++G+ P+   F+ +L+AC ++GL  +G E F+ M + +G++P  +HY+C+VDLLGRAG 
Sbjct: 395 KQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPD-HGIEPHHQHYSCVVDLLGRAGY 453

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           LN+A + I SM ++P  +VWGALL ACKIH+ V L E+A  ++  L+P NTG+YV LSN+
Sbjct: 454 LNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNL 513

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+ A     +  VR+MM ++ L KD G+S +E+ G +  F VGDR+H ++ EI+  LD+L
Sbjct: 514 YASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRL 573

Query: 421 ENLVQEHDGTKRSDQK----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
           E  ++        +      N EE       HSE+LA+A+GII+T+PGT + + KNLR C
Sbjct: 574 EKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRAC 633

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +CH  IKL+SK+VDR+ I+RDA RFHHFK G CSC D+W
Sbjct: 634 INCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 673



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 154/316 (48%), Gaps = 2/316 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NA+I GY   ++V   + ++  M+   V  N  T L +L  C       +G   H    
Sbjct: 68  WNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTF 127

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K+G   +  V N L++MY K G + Y R +FD++ ++ +++W ++ISGY QNG     L 
Sbjct: 128 KYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALN 187

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           +++EM+   V PD +  V V+++  ++     G  +   +   G    P +  +L  MYA
Sbjct: 188 VFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYA 247

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           + G ++ AR  F+ M +  ++ W A+I GY  +G+GE A++LF EM+   IR D     S
Sbjct: 248 KRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRS 307

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
            + A +  G  +    +  G  +K   +      T ++D+  + G +  A   +   + +
Sbjct: 308 AVLASAQVGSLELA-RWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLA-RCVFDRVAD 365

Query: 315 PDGAVWGALLGACKIH 330
            D  +W  ++    +H
Sbjct: 366 KDVVLWSVMIMGYGLH 381



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 127/229 (55%), Gaps = 2/229 (0%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
           G V+Y  K F +V E  ++ WNA+I GY Q  +    + +Y +M+   V P+  TF+ VL
Sbjct: 48  GDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVL 107

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
            +C       +G ++  Q    GFGSN F+ N+L++MYA+ G +  AR +FD +  +TVV
Sbjct: 108 KACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVV 167

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           SWT+II GY  +G    A+ +F EM +  ++PD  A VSV++A ++     +G +  +G+
Sbjct: 168 SWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQG-KSIHGL 226

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
             K GL+  P+    +  +  + G L E      + + +P+  +W A++
Sbjct: 227 VTKLGLEFEPDIVISLTTMYAKRG-LVEVARFFFNRMEKPNLILWNAMI 274



 Score = 46.6 bits (109), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 1/136 (0%)

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
           +V  Q+  +G     FL    IN     G++  A   F  +    ++ W AII GY    
Sbjct: 20  QVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKN 79

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY 288
             +  ++++ +M  S + P+   F+ VL AC    +   G +  +G   KYG        
Sbjct: 80  IVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQ-IHGQTFKYGFGSNVFVQ 138

Query: 289 TCMVDLLGRAGQLNEA 304
             +V +  + GQ++ A
Sbjct: 139 NSLVSMYAKFGQISYA 154


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/511 (41%), Positives = 309/511 (60%), Gaps = 9/511 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +NA+I+GY       EA+ L+ +M+ +GV+   VT L LL  C +      G   H  
Sbjct: 397 ISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHED 456

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ G+  +  + N LM MY +CGS+   + +F+    + +I+WN+MI+G+AQ+G     
Sbjct: 457 ILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETA 516

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            +L++EM++  + PD +TF  VLS C +  A  +G ++  +I  +G   +  L NALINM
Sbjct: 517 YKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINM 576

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP-DGTA 251
           Y RCG+L+ AR +F  +  + V+SWTA+IGG    G    A++LF +M   G RP DG+ 
Sbjct: 577 YIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGST 636

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F S+LSAC+HAGL  +G + F  M+++YG+ P  EHY C+V LLGRA +  EA  LI  M
Sbjct: 637 FTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQM 696

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
              PD AVW  LLGAC+IH N+ LAE A    +KL   N   Y+LLSN+Y+ A   D + 
Sbjct: 697 PFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVA 756

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
           ++R +M  R ++K+PG S++E+   +H F+  DR+H +T EIY  L +L   V+  +   
Sbjct: 757 KIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLS--VEMEEAGY 814

Query: 432 RSDQKNSEEHLNDTE------VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
             D ++    L           HSE+LAIA+G+I T PGT I + KNLRICGDCH   K 
Sbjct: 815 FPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKF 874

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +SK+V R+ I RD+ RFH FK+G CSC+DYW
Sbjct: 875 ISKLVGREIIARDSNRFHSFKNGKCSCEDYW 905



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 113/315 (35%), Positives = 172/315 (54%), Gaps = 2/315 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V YNALI+    +    EA   + +MR  GV +N  T L +L  C     L  G   H  
Sbjct: 296 VVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSH 355

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             + G   D  +GN L++MY +CG +   R+LF  +P++ LI+WNA+I+GYA+       
Sbjct: 356 ISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEA 415

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + LY++M+S GV P  VTF+ +LS+CA+  A++ G  + + I  +G  SN  L NAL+NM
Sbjct: 416 MRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNM 475

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y RCG+L +A+ +F+G   + V+SW ++I G+  HG  E A +LF EM    + PD   F
Sbjct: 476 YRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITF 535

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            SVLS C +    + G +  +G   + GLQ        ++++  R G L +A  +  S L
Sbjct: 536 ASVLSGCKNPEALELGKQ-IHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHS-L 593

Query: 313 VEPDGAVWGALLGAC 327
              D   W A++G C
Sbjct: 594 QHRDVMSWTAMIGGC 608



 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 108/348 (31%), Positives = 182/348 (52%), Gaps = 4/348 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V YN ++  Y   + V E + LFG+M  +G+  + VT + LL     P  L  G   H +
Sbjct: 195 VSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKL 254

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            V+ GL+ D  VG  L+TM V+CG VD  ++ F  + ++ ++ +NA+I+  AQ+G     
Sbjct: 255 TVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEA 314

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            E Y  M+S GV  +  T++ +L++C+   A   G  +   I  +G  S+  + NALI+M
Sbjct: 315 FEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISM 374

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YARCG+L KAR +F  MP++ ++SW AII GY        A++L+ +M   G++P    F
Sbjct: 375 YARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTF 434

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + +LSAC+++     G +  +    + G++        ++++  R G L EA  + E   
Sbjct: 435 LHLLSACANSSAYADG-KMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ 493

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVI--KLEPMNTGYYVLLS 358
              D   W +++     H + E A   F ++   +LEP N  +  +LS
Sbjct: 494 AR-DVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLS 540



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 167/328 (50%), Gaps = 3/328 (0%)

Query: 43  VEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGR 102
            E +  T + LL  C     L      H   V+ G+  D  + N L+ MYVKC SV    
Sbjct: 23  TETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAH 82

Query: 103 KLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162
           ++F ++P + +I+WN++IS YAQ G      +L+ EM++ G  P+ +T++ +L++C    
Sbjct: 83  QVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPA 142

Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIG 222
               G ++  QI   G+  +P + N+L++MY +CG+L +AR +F G+  + VVS+  ++G
Sbjct: 143 ELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLG 202

Query: 223 GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQ 282
            Y    + +  + LF +M   GI PD   ++++L A +   + D+G +  + +  + GL 
Sbjct: 203 LYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEG-KRIHKLTVEEGLN 261

Query: 283 PGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH-KNVELAELAFG 341
                 T +V +  R G ++ A +  +  + + D  V+ AL+ A   H  NVE  E  + 
Sbjct: 262 SDIRVGTALVTMCVRCGDVDSAKQAFKG-IADRDVVVYNALIAALAQHGHNVEAFEQYYR 320

Query: 342 KVIKLEPMNTGYYVLLSNIYSEARNLDG 369
                  +N   Y+ + N  S ++ L+ 
Sbjct: 321 MRSDGVALNRTTYLSILNACSTSKALEA 348



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 150/313 (47%), Gaps = 2/313 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N+LIS Y       +A  LF +M+  G   N +T + +L  C  P  L  G   H  
Sbjct: 94  ISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQ 153

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G   D  V N L++MY KCG +   R++F  +  + ++++N M+  YAQ       
Sbjct: 154 IIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKEC 213

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+ +M S G+ PD VT++ +L +         G  + +     G  S+  +  AL+ M
Sbjct: 214 LGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTM 273

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
             RCG++  A+  F G+  + VV + A+I     HGH   A + +  M   G+  + T +
Sbjct: 274 CVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTY 333

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +S+L+ACS +   + G +  +   ++ G     +    ++ +  R G L +A EL  +M 
Sbjct: 334 LSILNACSTSKALEAG-KLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTM- 391

Query: 313 VEPDGAVWGALLG 325
            + D   W A++ 
Sbjct: 392 PKRDLISWNAIIA 404


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/531 (41%), Positives = 316/531 (59%), Gaps = 31/531 (5%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICV-- 58
           VFDE        V ++A+I   + +    E  SLF +M  +G   +   +L  +  CV  
Sbjct: 67  VFDEMPDKN--AVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAMA-CVRS 123

Query: 59  ----DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLI 114
               D  Y         + V+ GLD D SV +    M+ +CG V+  RKLFD +  K L+
Sbjct: 124 HEEADDVYR--------VVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLV 175

Query: 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
           TW   I  Y +  +    L L ++M   G+ PDA+T +GV+ +C+ L +  +   +   I
Sbjct: 176 TWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLA-HIVHGI 234

Query: 175 QANGFGSNPFL--NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
              GF  N  L    ALI++Y +CG+L  AR +FDGM  + +++W+A+I GYG+HG G  
Sbjct: 235 ITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGRE 294

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
           A+ LFD+M K+ ++PD   FVS+LSACSH+GL  +G E F  M   +G+ P PEHY CMV
Sbjct: 295 ALNLFDQM-KASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMV 353

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTG 352
           D+LGRAG+L+EA + IE M V P+ AVWGALLGAC+IH NV+LAE+    +  L+P N G
Sbjct: 354 DILGRAGKLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAG 413

Query: 353 YYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVE 412
            YV+L NIY+          +R +M+ R +KK  GYS +E+K +++ F+ GDR+H QT  
Sbjct: 414 RYVILYNIYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDRSHPQTDL 473

Query: 413 IYRMLDKLENLVQEHDGTK-------RSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGT 465
           IY  L++L + +++   T          D++  E  L    +HSEKLAI FG++N  PG+
Sbjct: 474 IYSELERLMDRIRQEGYTPDINFVLHDVDEETKESMLY---LHSEKLAIVFGLLNLGPGS 530

Query: 466 EIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            I + KNLR+CGDCH   K +SK+  R+ +VRDA RFHHFK+G CSC+DYW
Sbjct: 531 VIRIRKNLRVCGDCHTATKFISKVTGREIVVRDAHRFHHFKNGACSCRDYW 581



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 139/300 (46%), Gaps = 18/300 (6%)

Query: 38  MREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS 97
           M   G++ ++ T   ++  C    +   G+  H   VKFG      + N L+TMY KC  
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK 60

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
            +  R++FD++P+K  ++W+A+I    Q+        L+R+M S G  P   +   +L++
Sbjct: 61  YELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRP---SRGAILNA 117

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
            A + +H    +V + +  NG   +  + +A   M+ARCG ++ AR +FDG+  K +V+W
Sbjct: 118 MACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTW 177

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
              I  Y        A+ L  +M+  GI PD    + V+ ACS        L  F     
Sbjct: 178 ATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACS-------TLASFQLAHI 230

Query: 278 KYGLQPGPEHY-------TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
            +G+      Y       T ++DL  + G L  A ++ + M  E +   W A++    +H
Sbjct: 231 VHGIITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQ-ERNIITWSAMISGYGMH 289



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 21/236 (8%)

Query: 139 MKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGN 198
           M  LG+ PD  TF  ++ +C+ L     G+ + Q +   G+ S  F++N+LI MY +C  
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK 60

Query: 199 LKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSA 258
            + +R +FD MP K  VSW+AIIG        +    LF +ML  G RP   A ++ + A
Sbjct: 61  YELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAM-A 119

Query: 259 C--SHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPD 316
           C  SH    D      Y +  + GL       +    +  R G++  A +L + ++   D
Sbjct: 120 CVRSHEEADD-----VYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIM-SKD 173

Query: 317 GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
              W   +            E      + LE +     ++L  I+ +A  L G++R
Sbjct: 174 LVTWATTI------------EAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIR 217


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/507 (41%), Positives = 307/507 (60%), Gaps = 6/507 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N +I GY  +   S A   + +M    VE ++ T   LL        +  G   H + +
Sbjct: 86  WNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIHSVTI 145

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           + G +    V N L+ +Y  CG  +   K+F+ + E+ L+ WN+MI+G+A NG     L 
Sbjct: 146 RNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALT 205

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+REM   GV PD  T V +LS+ A LGA  +G  V   +   G   N  + N+L+++YA
Sbjct: 206 LFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYA 265

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG +++A+ +F  M  +  VSWT++I G  ++G GE A++LF EM   G+ P    FV 
Sbjct: 266 KCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVG 325

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VL ACSH G+ D+G EYF  MK + G+ P  EHY CMVDLL RAG + +A E I++M V+
Sbjct: 326 VLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQ 385

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
           P+  +W  LLGAC IH ++ L E+A   ++ LEP ++G YVLLSN+Y+  R    +  +R
Sbjct: 386 PNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPKHSGDYVLLSNLYASERRWSDVQVIR 445

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ-----EHDG 429
             M +  +KK PGYS VEL  RV+ F +GDR+H Q+ ++Y +L+K+  L++      H  
Sbjct: 446 RSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSHPQSQDVYALLEKITELLKLEGYVPHTA 505

Query: 430 TKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKI 489
              +D +  EE       HSEK+AIAF ++NT PGT I VMKNLR+C DCH+ IKL++KI
Sbjct: 506 NVLADIEE-EEKEQALSYHSEKVAIAFMLLNTPPGTPIRVMKNLRVCADCHMAIKLIAKI 564

Query: 490 VDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DR+ ++RD +RFHHF+ G CSCKDYW
Sbjct: 565 YDREIVIRDRSRFHHFRGGSCSCKDYW 591



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 130/227 (57%), Gaps = 7/227 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++I+G+ LN   +EA++LF +M  +GVE +  T++ LL    + G L LG   H  
Sbjct: 185 VAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVY 244

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K GL  +  V N L+ +Y KCG++   +++F ++ E+  ++W ++I G A NG     
Sbjct: 245 LLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEA 304

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           LEL++EM+  G+ P  +TFVGVL +C+H G    G E  ++++    G  P + +   ++
Sbjct: 305 LELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEEC-GIIPRIEHYGCMV 363

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGH---GEVA 233
           ++ +R G +K+A      MP +   V W  ++G   IHGH   GE+A
Sbjct: 364 DLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIA 410



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 125/258 (48%), Gaps = 6/258 (2%)

Query: 70  HCICVKFGLDLD-FSVGNCLM-TMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
           H   ++ G+ L+   +G  L+ T+      + Y   +F  +    + TWN +I GYA++ 
Sbjct: 38  HAFSIRHGVSLNNPDMGKHLIFTIVSLSAPMSYAYNVFTVIHNPNVFTWNTIIRGYAESD 97

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
             +     YR+M    V PD  T+  +L + +       G  +      NGF S  F+ N
Sbjct: 98  NPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQN 157

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           +L+++YA CG+ + A  +F+ M  + +V+W ++I G+ ++G    A+ LF EM   G+ P
Sbjct: 158 SLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEP 217

Query: 248 DGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           DG   VS+LSA +  G  + G   + Y +  K GL         ++DL  + G + EA  
Sbjct: 218 DGFTVVSLLSASAELGALELGRRVHVYLL--KVGLSKNSHVTNSLLDLYAKCGAIREAQR 275

Query: 307 LIESMLVEPDGAVWGALL 324
           +   M  E +   W +L+
Sbjct: 276 VFSEM-SERNAVSWTSLI 292


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/506 (40%), Positives = 312/506 (61%), Gaps = 5/506 (0%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
            V + + I+ YV   L S+A+ LF +M+ +GV  +  T+  ++  C     L  G   H  
Sbjct: 638  VSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSY 697

Query: 73   CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             +K G+  +  V N L+ MY KCGSV+  R +F ++P K +++WN MI GY+QN L    
Sbjct: 698  VIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEA 757

Query: 133  LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            LEL+ +M+     PD +T   VL +CA L A   G E+   I   G+ S+  +  AL++M
Sbjct: 758  LELFLDMQK-QFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDM 816

Query: 193  YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
            YA+CG L  A+ +FD +P+K ++SWT +I GYG+HG G  A+  F+EM  +GI PD ++F
Sbjct: 817  YAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSF 876

Query: 253  VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
              +L+ACSH+GL ++G ++F  M+N+ G++P  EHY C+VDLL R G L++A + IESM 
Sbjct: 877  SVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMP 936

Query: 313  VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            ++PD  +WG LL  C+IH +V+LAE     + +LEP NT YYV+L+N+Y+EA   + + +
Sbjct: 937  IKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKK 996

Query: 373  VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
            +R  M++R  K++PG S++E+ G+ ++F+ G+  H Q   I  +L KL   +Q  D    
Sbjct: 997  LRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKRIDVLLRKLTMQMQNEDYFSM 1056

Query: 433  SDQKNSEEHLNDTEV----HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
                   E   + E+    HSEK A+AFGI+N  PG  + V KN R+CGDCH   K +SK
Sbjct: 1057 FRYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPPGRTVRVSKNQRVCGDCHEMGKFMSK 1116

Query: 489  IVDRQFIVRDATRFHHFKSGFCSCKD 514
               R+ ++RD+ RFHHFK G CSC+D
Sbjct: 1117 TTKREIVLRDSNRFHHFKDGLCSCRD 1142



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 109/360 (30%), Positives = 187/360 (51%), Gaps = 7/360 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE   S    V +N++I+G V+N      + +F +M   GVE++  T++ +L    + 
Sbjct: 527 LFDE--LSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANI 584

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L LG   H   VK     +    N L+ MY KCG+++   ++F ++ +  +++W + I
Sbjct: 585 GNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTI 644

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           + Y + GL +  + L+ EM+S GV PD  T   ++ +CA   +   G +V   +  NG G
Sbjct: 645 AAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMG 704

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           SN  + NALINMYA+CG++++AR +F  +P K +VSW  +IGGY  +     A++LF +M
Sbjct: 705 SNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDM 764

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            K   +PD      VL AC+     DKG E  +G   + G          +VD+  + G 
Sbjct: 765 QKQ-FKPDDITMACVLPACAGLAALDKGRE-IHGHILRRGYFSDLHVACALVDMYAKCGL 822

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIH--KNVELAELAFGKVIKLEPMNTGYYVLLS 358
           L  A +L+  M+ + D   W  ++    +H   N  ++     ++  +EP  + + V+L+
Sbjct: 823 LVLA-QLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILN 881



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 149/305 (48%), Gaps = 4/305 (1%)

Query: 8   STH-LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLG 66
           +TH +T   NA I+ +     +  A+ L  K +   + +NS     +L +C +   L  G
Sbjct: 331 TTHSVTQNQNAKINKFCEMGDLRNAIELLTKSKSYELGLNSYC--SVLQLCAEKKSLEDG 388

Query: 67  MCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQN 126
              H + +  G+ +D ++G  L+ MYV CG +  GRK+FD++    +  WN ++S YA+ 
Sbjct: 389 KRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKI 448

Query: 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
           G     + L+++M+ LGV  +  TF  VL   A LG       V   +   GFGSN  + 
Sbjct: 449 GNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVV 508

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           N+LI  Y + G ++ A  +FD +    VVSW ++I G  ++G     +++F +ML  G+ 
Sbjct: 509 NSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVE 568

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
            D T  VSVL A ++ G    G    +G   K            ++D+  + G LN A E
Sbjct: 569 VDLTTLVSVLVAWANIGNLSLG-RALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATE 627

Query: 307 LIESM 311
           +   M
Sbjct: 628 VFVKM 632



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 92/214 (42%), Gaps = 4/214 (1%)

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
           NA I+ + + G   + +EL  + KS  +  +  ++  VL  CA   +   G  V   I +
Sbjct: 340 NAKINKFCEMGDLRNAIELLTKSKSYELGLN--SYCSVLQLCAEKKSLEDGKRVHSVIIS 397

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
           NG   +  L   L+ MY  CG+L + R IFD +    V  W  ++  Y   G+   +V L
Sbjct: 398 NGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 457

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           F +M K G+  +   F  VL   +  G   K  +  +G   K G          ++    
Sbjct: 458 FKKMQKLGVVGNCYTFTCVLKCFAALGKV-KECKRVHGYVLKLGFGSNTAVVNSLIAAYF 516

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           + G +  A  L +  L EPD   W +++  C ++
Sbjct: 517 KFGGVESAHNLFDE-LSEPDVVSWNSMINGCVVN 549


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/510 (40%), Positives = 315/510 (61%), Gaps = 35/510 (6%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N++ISGYV N L  + + LF +M   G+  +  TM+                     
Sbjct: 217 ISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMV--------------------- 255

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
                  ++ ++ NCL+ MY K G+++   ++F+ + E+ +++W +MI+GYA+ GL+   
Sbjct: 256 ------SVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMS 309

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + L+ EM+   + P+++T   +L +CA L A   G E+   I  NGF  +  + NAL++M
Sbjct: 310 VRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDM 369

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CG L  AR +FD +P K +VSWT +I GYG+HG+G  A+  F+EM  SGI PD  +F
Sbjct: 370 YLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSF 429

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +S+L ACSH+GL D+G  +F  M+N   ++P  EHY C+VDLL RAG L++A + I+ M 
Sbjct: 430 ISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMP 489

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           +EPD  +WGALL  C+I+ +V+LAE     V +LEP NTGYYVLL+NIY+EA   + + +
Sbjct: 490 IEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKK 549

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           +R  +  R L+K+PG S++E+KG+VH+F+ GD +H    +I  +L K    ++E     +
Sbjct: 550 LRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPK 609

Query: 433 SDQKNSEEHLNDTEV------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
              + +    +DTE       HSEK+A+AFGI++  PG  + V KNLR+CGDCH   K +
Sbjct: 610 --MRYALIKADDTEKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFM 667

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SK+V R  I+RD+ RFHHFK G CSC+ +W
Sbjct: 668 SKMVKRDIILRDSNRFHHFKDGSCSCRGHW 697



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 172/367 (46%), Gaps = 28/367 (7%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           YN  I  +     +  A+ L  +  +  +E+   T   +L +C D   +  G   H I  
Sbjct: 71  YNIEICRFCELGNLRRAMELINQSPKPDLELR--TYCSVLQLCADLKSIQDGRRIHSIIQ 128

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
              +++D  +G+ L+ MYV CG +  GR++FD+V  + +  WN +++GYA+ G     L 
Sbjct: 129 SNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLS 188

Query: 135 LYREMKSLGVC--------------PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           L++ M+ LG+                D +++  ++S     G    GL++ +Q+   G  
Sbjct: 189 LFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGIN 248

Query: 181 SN--------PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
           ++          LNN L++MY++ GNL  A  +F+ M  ++VVSWT++I GY   G  ++
Sbjct: 249 TDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDM 308

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
           +V+LF EM K  + P+      +L AC+     ++G E  +G   + G          +V
Sbjct: 309 SVRLFHEMEKEDLFPNSITMACILPACASLAALERGQE-IHGHILRNGFSLDRHVANALV 367

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMN 350
           D+  + G L  A  L+  M+ E D   W  ++    +H     A  AF ++    +EP  
Sbjct: 368 DMYLKCGALGLA-RLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDE 426

Query: 351 TGYYVLL 357
             +  +L
Sbjct: 427 VSFISIL 433


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/523 (40%), Positives = 319/523 (60%), Gaps = 30/523 (5%)

Query: 2   FDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPG 61
           + ES +S H  + Y  L+ GY                   G+  N      +L  C    
Sbjct: 83  YAESSQSKHNAIFYYNLMLGY-------------------GISPNKYAFPFVLKACAGLR 123

Query: 62  YLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKC-GSVDYGRKLFDQVPEKGLITWNAMI 120
            L LG   H   VKFG D D  V N ++ MY  C G +++ RKLFD++P+   +TW AMI
Sbjct: 124 DLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMI 183

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GYA+ G +   + L+R+M+  GVCPD VT V VLS+C  LGA  +G  +E  I+     
Sbjct: 184 GGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVL 243

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
               L+NAL++M+A+CG++ KA  +F  M ++T+VSWT++I G  +HG G  AV LF+EM
Sbjct: 244 KTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEM 303

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
             SG+ P+  AF+ +LSACSH+GL ++G +YF  M  ++G+ P  EHY CMVDLL RAG 
Sbjct: 304 KASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGL 363

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           + EALE +E M +EP+  +W  L+ AC++H  ++L E    ++I+ EPM+   YVLLSNI
Sbjct: 364 VTEALEFVERMPIEPNPIIWRTLISACRVHGELKLGESISKQLIRNEPMHESNYVLLSNI 423

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y +  + +   ++R+ M ++ ++K PG + +EL   +H F+VGDR+H+Q  EI +M++++
Sbjct: 424 YGKMLDWEKKSKIRVAMGKKGIQKVPGSTMIELDNEIHEFIVGDRSHNQYNEIIKMVNEM 483

Query: 421 ENLVQEHDGTKRS-------DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
              ++       +       D+++ E+ L+    HSEKLAIAF ++NT PG+ I + KNL
Sbjct: 484 GREMKRAGYAPTTTEVFLDIDEEDKEDALSR---HSEKLAIAFALLNTPPGSPIRITKNL 540

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           R+CGDCH   K +SKI +R+ ++RD +RFHHF+ G CSC D+W
Sbjct: 541 RVCGDCHSASKFISKIYNREIVMRDRSRFHHFRDGQCSCGDFW 583



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 125/246 (50%), Gaps = 6/246 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  K   +T  + A+I GY      + AV LF KM+  GV  + VTM+ +L  C D 
Sbjct: 167 LFDEMPKLDPVT--WTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDL 224

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L LG        K  +     + N L+ M+ KCG VD    LF  + ++ +++W ++I
Sbjct: 225 GALELGKWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVI 284

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            G A +G     + L+ EMK+ G+ P+ + F+G+LS+C+H G    G +   ++    FG
Sbjct: 285 VGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEM-TRQFG 343

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLF 237
             P + +   ++++ +R G + +A    + MP     + W  +I    +HG  ++   + 
Sbjct: 344 IVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVHGELKLGESIS 403

Query: 238 DEMLKS 243
            +++++
Sbjct: 404 KQLIRN 409


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/508 (41%), Positives = 307/508 (60%), Gaps = 4/508 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +ISG   N +  +A+ +  +M    +  +S T+  +LPI  +   L  G   H  
Sbjct: 202 VSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGY 261

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ G D D  +G+ L+ MY KC  VD   ++F  +P+   I+WN++I+G  QNG+    
Sbjct: 262 AIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEG 321

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+ +++M    + P+ V+F  ++ +CAHL    +G ++   I  + F  N F+ +AL++M
Sbjct: 322 LKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDM 381

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CGN++ AR IFD M    +VSWTA+I GY +HGH   A+ LF  M   G++P+  AF
Sbjct: 382 YAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAF 441

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           ++VL+ACSHAGL D+  +YF  M   Y + PG EHY  + DLLGR G+L EA E I  M 
Sbjct: 442 MAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMH 501

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           +EP G+VW  LL AC++HKN+ELAE    K+  ++P N G YVLLSNIYS A       +
Sbjct: 502 IEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARK 561

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYR----MLDKLENLVQEHD 428
           +R+ MR++ +KK P  S++E+K +VH F+ GD++H     I      +L+++E      D
Sbjct: 562 LRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLD 621

Query: 429 GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
            T+       E+       HSE+LAI FGII+T  GT I V KNLR+C DCH   K +SK
Sbjct: 622 TTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISK 681

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           IV R+ +VRD +RFHHFK G CSC D+W
Sbjct: 682 IVGREIVVRDNSRFHHFKDGKCSCGDFW 709



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 173/383 (45%), Gaps = 32/383 (8%)

Query: 5   SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLW 64
           S+ S   T+ + ++I  Y  + L   ++S F +M   G   +      +L  C     L 
Sbjct: 64  SLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLR 123

Query: 65  LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSV----------DYG------------- 101
            G   H   ++ G+  D    N LM MY K  S+          D G             
Sbjct: 124 FGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKES 183

Query: 102 ------RKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
                 RK+F+ +P++ +++WN +ISG AQNG+    L + REM +  + PD+ T   VL
Sbjct: 184 YYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVL 243

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
              A       G E+      NG+ ++ F+ ++LI+MYA+C  +  +  +F  +P+   +
Sbjct: 244 PIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGI 303

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           SW +II G   +G  +  ++ F +ML + I+P+  +F S++ AC+H      G +  +G 
Sbjct: 304 SWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQ-LHGY 362

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVEL 335
             +          + +VD+  + G +  A  + + M +  D   W A++    +H +   
Sbjct: 363 IIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELY-DMVSWTAMIMGYALHGHAYD 421

Query: 336 AELAFGKVIKLEPMNTGYYVLLS 358
           A ++  K +++E +   Y   ++
Sbjct: 422 A-ISLFKRMEVEGVKPNYVAFMA 443



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 139/281 (49%), Gaps = 10/281 (3%)

Query: 10  HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCC 69
           H  + +N++I+G V N +  E +  F +M    ++ N V+   ++P C     L LG   
Sbjct: 300 HDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQL 359

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   ++   D +  + + L+ MY KCG++   R +FD++    +++W AMI GYA +G A
Sbjct: 360 HGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHA 419

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN-- 187
              + L++ M+  GV P+ V F+ VL++C+H G      +    +  + +   P L +  
Sbjct: 420 YDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQD-YRIIPGLEHYA 478

Query: 188 ALINMYARCGNLKKARAIFDGM---PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
           A+ ++  R G L++A      M   P  +V  W+ ++    +H + E+A ++  ++    
Sbjct: 479 AVADLLGRVGRLEEAYEFISDMHIEPTGSV--WSTLLAACRVHKNIELAEKVSKKLFTVD 536

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
            +  G A+V + +  S AG      +    M++K G++  P
Sbjct: 537 PQNIG-AYVLLSNIYSAAGRWKDARKLRIAMRDK-GMKKKP 575



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 112/255 (43%), Gaps = 34/255 (13%)

Query: 104 LFDQVPEK-GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162
           +F+ +P     + W ++I  Y  +GL  H L  + +M + G  PD   F  VL SC  + 
Sbjct: 61  IFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMK 120

Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA-------------------- 202
               G  V   I   G G + +  NAL+NMY++  +L++                     
Sbjct: 121 DLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKE 180

Query: 203 ---------RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
                    R +F+ MP++ +VSW  +I G   +G  E A+ +  EM  + +RPD     
Sbjct: 181 KESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLS 240

Query: 254 SVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           SVL   +      KG E + Y ++N Y         + ++D+  +  +++++  +   ML
Sbjct: 241 SVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIG--SSLIDMYAKCTRVDDSCRVF-YML 297

Query: 313 VEPDGAVWGALLGAC 327
            + DG  W +++  C
Sbjct: 298 PQHDGISWNSIIAGC 312


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/511 (42%), Positives = 309/511 (60%), Gaps = 9/511 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGV-EINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V ++AL+ G+VL   + EA SLF  M  QG+  ++  ++   L  C +   L LG   H 
Sbjct: 300 VTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHA 359

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           +  K GL  D + GN L++MY K G +D    LFDQ+  K  ++++A++SGY QNG A  
Sbjct: 360 LLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADE 419

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
              ++R+M++  V PD  T V ++ +C+HL A   G      +   G  S   + NALI+
Sbjct: 420 AFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALID 479

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+CG +  +R IFD MP + +VSW  +I GYGIHG G+ A  LF +M      PD   
Sbjct: 480 MYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVT 539

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+ ++SACSH+GL  +G  +F+ M +KYG+ P  EHY  MVDLL R G L+EA + I+ M
Sbjct: 540 FICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGM 599

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            ++ D  VWGALLGAC++HKN++L +     + +L P  TG +VLLSNI+S A   D   
Sbjct: 600 PLKADVRVWGALLGACRVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAA 659

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
            VR++ +E+  KK PG S++E+ G +H F+ GDR+H Q+ EIY+ LD +  LV  +    
Sbjct: 660 EVRIIQKEQGFKKSPGCSWIEINGSLHAFIGGDRSHAQSSEIYQELDNI--LVDINKLGY 717

Query: 432 RSDQKNSEEHLNDTEV------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
           R+D     + + + E       HSEKLAIAFG++  S    I V KNLR+CGDCH  IK 
Sbjct: 718 RADTSFVLQDVEEEEKEKALLYHSEKLAIAFGVLTLSEDKTIFVTKNLRVCGDCHTVIKY 777

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           ++ +  R  IVRDA RFHHFK+G CSC D+W
Sbjct: 778 MTLVRKRAIIVRDANRFHHFKNGQCSCGDFW 808



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/289 (32%), Positives = 155/289 (53%), Gaps = 10/289 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD+ +     TV Y+AL+SGYV N    EA  +F KM+   V+ +  TM+ L+P C   
Sbjct: 392 LFDQMVVKD--TVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHL 449

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G C H   +  G+  + S+ N L+ MY KCG +D  R++FD +P + +++WN MI
Sbjct: 450 AALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMI 509

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GY  +GL      L+ +MK     PD VTF+ ++S+C+H G  + G +    + A+ +G
Sbjct: 510 AGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEG-KRWFHMMAHKYG 568

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLF 237
             P + +   ++++ AR G L +A     GMP K  V  W A++G   +H + ++  Q+ 
Sbjct: 569 ITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNIDLGKQVS 628

Query: 238 DEMLKSGIRPDGTA-FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
             + + G  P+GT  FV + +  S AG  D+  E    ++ + G +  P
Sbjct: 629 SMIQQLG--PEGTGNFVLLSNIFSAAGRFDEAAEVRI-IQKEQGFKKSP 674



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 162/324 (50%), Gaps = 8/324 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +NA+++GY L+   S+ ++    M++     N+ T++ LLP+    G L  G   H 
Sbjct: 195 VVAWNAMLAGYALHGKYSDTIACLLLMQDDHAP-NASTLVALLPLLAQHGALSQGRAVHA 253

Query: 72  ICVKFGLDLDFS----VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
             V+     D      VG  L+ MY KCG + Y  ++F+ +  +  +TW+A++ G+   G
Sbjct: 254 YSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCG 313

Query: 128 LATHVLELYREMKSLGVCPDAVTFVG-VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
                  L+++M + G+C  + T V   L +CA+L    +G ++   +  +G  ++    
Sbjct: 314 RMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAG 373

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           N+L++MYA+ G + +A  +FD M  K  VS++A++ GY  +G  + A ++F +M    ++
Sbjct: 374 NSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQ 433

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           PD    VS++ ACSH      G +  +G     G+         ++D+  + G+++ + +
Sbjct: 434 PDVATMVSLIPACSHLAALQHG-KCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQ 492

Query: 307 LIESMLVEPDGAVWGALLGACKIH 330
           + + M    D   W  ++    IH
Sbjct: 493 IFDVMPAR-DIVSWNTMIAGYGIH 515



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 150/318 (47%), Gaps = 14/318 (4%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           YNALI  Y L              R +  + N+ T   +L  C     L      HC   
Sbjct: 97  YNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVLKACSALLDLRSARAVHCHAA 156

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           + GL  D  V   L+ +Y KC S  +   +F ++P + ++ WNAM++GYA +G  +  + 
Sbjct: 157 RAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVVAWNAMLAGYALHGKYSDTIA 216

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ-QIQANGFGSNP---FLNNALI 190
               M+     P+A T V +L   A  GA S G  V    ++A     +     +  AL+
Sbjct: 217 CLLLMQD-DHAPNASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVGTALL 275

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG---IRP 247
           +MYA+CG+L  A  +F+ M  +  V+W+A++GG+ + G    A  LF +ML  G   + P
Sbjct: 276 DMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSP 335

Query: 248 DGTAFVSVLSACSHAGLTDKGL-EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
             T+  S L AC  A L+D  L +  + +  K GL         ++ +  +AG +++A  
Sbjct: 336 --TSVASALRAC--ANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATT 391

Query: 307 LIESMLVEPDGAVWGALL 324
           L + M+V+ D   + AL+
Sbjct: 392 LFDQMVVK-DTVSYSALV 408



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 13/238 (5%)

Query: 95  CGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGV 154
           CG +   R LFDQ+P  G+  +NA+I  Y+  G A  +       +     P+  TF  V
Sbjct: 76  CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFV 135

Query: 155 LSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTV 214
           L +C+ L        V       G  ++ F++ AL+++YA+C + + A  +F  MP + V
Sbjct: 136 LKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDV 195

Query: 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFY 273
           V+W A++ GY +HG     +     +++    P+ +  V++L   +  G   +G   + Y
Sbjct: 196 VAWNAMLAGYALHGKYSDTIACL-LLMQDDHAPNASTLVALLPLLAQHGALSQGRAVHAY 254

Query: 274 GMK------NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
            ++      +K G+  G    T ++D+  + G L  A  + E+M V  +   W AL+G
Sbjct: 255 SVRACSLHDHKDGVLVG----TALLDMYAKCGHLVYASRVFEAMAVRNE-VTWSALVG 307


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/544 (40%), Positives = 323/544 (59%), Gaps = 43/544 (7%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +N ++SGY       ++  LF +M ++GV  NSVT++ +L  C     L  G   + 
Sbjct: 173 VVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYK 232

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCG-------------------------------SVDY 100
                 ++ +  + N L+ M+  CG                                +D 
Sbjct: 233 YINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDL 292

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160
            RK FDQ+PE+  ++W AMI GY +       L L+REM+   V PD  T V +L++CAH
Sbjct: 293 ARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAH 352

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           LGA  +G  V+  I  N   ++ F+ NALI+MY +CGN+ KA+ +F  M  K   +WTA+
Sbjct: 353 LGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAM 412

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           I G  I+GHGE A+ +F  M+++ I PD   ++ VL AC+HAG+ +KG  +F  M  ++G
Sbjct: 413 IVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHG 472

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           ++P   HY CMVDLLGRAG+L EA E+I +M V+P+  VWG+LLGAC++HKNV+LAE+A 
Sbjct: 473 IKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAA 532

Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400
            ++++LEP N   YVLL NIY+  +  + + +VR +M ER +KK PG S +EL G V+ F
Sbjct: 533 KQILELEPENGAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEF 592

Query: 401 MVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLN----DTEV----HSEKL 452
           + GD++H Q+ EIY    KLEN++Q+      S    SE  L+    D E     HSEKL
Sbjct: 593 VAGDQSHPQSKEIYA---KLENMMQDLIKAGYSPD-TSEVFLDLGEEDKETALYRHSEKL 648

Query: 453 AIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSC 512
           AIA+ +I++ PG  I ++KNLR+C DCH   KLVS+  +R+ IVRD TRFHHF+ G CSC
Sbjct: 649 AIAYALISSGPGITIRIVKNLRMCVDCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSC 708

Query: 513 KDYW 516
            ++W
Sbjct: 709 NNFW 712



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 121/254 (47%), Gaps = 14/254 (5%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYA-----QNGLATHVLELYREMKSLGVCPDAVT 150
           G + Y R++FD +P+  L  WN MI GY+     QNG++ ++L L   +K     PD  T
Sbjct: 55  GKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIK-----PDRFT 109

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
           F  +L       A   G  +      +GF SN F+  A I+M++ C  +  AR +FD   
Sbjct: 110 FPFLLKGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGD 169

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD-KGL 269
              VV+W  ++ GY      + +  LF EM K G+ P+    V +LSACS   L D +G 
Sbjct: 170 AWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSK--LKDLEGG 227

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
           ++ Y   N   ++        ++D+    G+++EA  + ++M    D   W +++     
Sbjct: 228 KHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNM-KNRDVISWTSIVTGFAN 286

Query: 330 HKNVELAELAFGKV 343
              ++LA   F ++
Sbjct: 287 IGQIDLARKYFDQI 300


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/513 (40%), Positives = 314/513 (61%), Gaps = 11/513 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N++I  Y LN     A+ LF +MR   ++ + +T++ L  I    G +         
Sbjct: 314 ISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGF 373

Query: 73  CVKFGLDL-DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
            ++ G  L D ++GN ++ MY K G VD  R +F+ +P K +I+WN +ISGYAQNG A+ 
Sbjct: 374 TLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASE 433

Query: 132 VLELYREMKSLG--VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
            +E+Y  M+  G  +  +  T+V VL +C+  GA   G+++  ++  NG   + F+  +L
Sbjct: 434 AIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSL 493

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
            +MY +CG L  A ++F  +PR   V W  +I  +G HGHGE AV LF EML  G++PD 
Sbjct: 494 ADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDH 553

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
             FV++LSACSH+GL D+G   F  M+  YG+ P  +HY CMVDL GRAGQL  AL  I+
Sbjct: 554 ITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIK 613

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDG 369
           SM ++PD ++WGALL AC++H NV+L ++A   + ++EP + GY+VLLSN+Y+ A   +G
Sbjct: 614 SMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEG 673

Query: 370 IMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD------KLENL 423
           +  +R +   + L+K PG+S +E+  +V +F  G++ H    E+YR L       K+   
Sbjct: 674 VDEIRSITSGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALHEKLKMVGY 733

Query: 424 VQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFI 483
           V +H    +  + + +EH+     HSE+LA+AF +I T   T I + KNLR+CGDCH   
Sbjct: 734 VPDHRFVLQDVEDDEKEHI--LMSHSERLAMAFALITTPAKTTIRIFKNLRVCGDCHSVT 791

Query: 484 KLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K +SKI +R+ IVRD+ RFHHFK+G CSC DYW
Sbjct: 792 KFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 824



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/250 (33%), Positives = 133/250 (53%), Gaps = 8/250 (3%)

Query: 15  YNALISGYVLNSLVSEAVSLFGK-MREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +N +ISGY      SE +  F   M   G++ +  T   +L  C +   +  G   HC+ 
Sbjct: 120 WNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRN---VTDGNKIHCLA 176

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           +KFG   D  V   L+ +Y + G+V   R LFD++P + + +WNAMISGY Q+G A   L
Sbjct: 177 LKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEAL 236

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
            L   ++++    D+VT V +LS+C   G  + G+ +      +G  S  F++N LI++Y
Sbjct: 237 TLSDGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLY 292

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
           A  G+LK  + +FD M  + ++SW +II  Y ++     A+ LF EM  S I+PD    +
Sbjct: 293 AEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLI 352

Query: 254 SVLSACSHAG 263
           S+ S  S  G
Sbjct: 353 SLASILSQLG 362



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 137/265 (51%), Gaps = 14/265 (5%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYRE-MKSLGVCP 146
           L+ +Y   G+V   R  FD +  + +  WN MISGY + G ++ V+  +   M S G+ P
Sbjct: 92  LVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQP 151

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF 206
           D  TF  VL +C ++   + G ++       GF  + ++  +LI++Y R G +  AR +F
Sbjct: 152 DYRTFPSVLKACRNV---TDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILF 208

Query: 207 DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP-DGTAFVSVLSACSHAGLT 265
           D MP + + SW A+I GY   G+ + A+ L D     G+R  D    VS+LSAC+ AG  
Sbjct: 209 DEMPTRDMGSWNAMISGYCQSGNAKEALTLSD-----GLRAMDSVTVVSLLSACTEAGDF 263

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           ++G+   +    K+GL+        ++DL    G L +  ++ + M V  D   W +++ 
Sbjct: 264 NRGVT-IHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVR-DLISWNSIIK 321

Query: 326 ACKIHKNVELAELAFG--KVIKLEP 348
           A ++++    A L F   ++ +++P
Sbjct: 322 AYELNEQPLRAILLFQEMRLSRIQP 346



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 11/189 (5%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE-M 240
           N  ++  L+N+Y   GN+  AR  FD +  + V +W  +I GYG  G+    ++ F   M
Sbjct: 85  NVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFM 144

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           L SG++PD   F SVL AC +    +K     + +  K+G          ++ L  R G 
Sbjct: 145 LSSGLQPDYRTFPSVLKACRNVTDGNK----IHCLALKFGFMWDVYVAASLIHLYCRYGA 200

Query: 301 LNEALELIESMLVEPDGAVWGALL-GACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
           +  A  L + M     G+ W A++ G C+     E   L+ G    L  M++   V L +
Sbjct: 201 VVNARILFDEMPTRDMGS-WNAMISGYCQSGNAKEALTLSDG----LRAMDSVTVVSLLS 255

Query: 360 IYSEARNLD 368
             +EA + +
Sbjct: 256 ACTEAGDFN 264


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/521 (42%), Positives = 313/521 (60%), Gaps = 8/521 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE   S      +NA+I+G        +A+SLF +M   G   +  T+  +L  C   
Sbjct: 150 LFDE--MSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAGL 207

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H   +K G +L   VG+ L  MY+K GS+  G KL   +P + ++ WN +I
Sbjct: 208 RSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLI 267

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +G AQNG    VL  Y  MK  G  PD +TFV VLS+C+ L     G ++  ++   G  
Sbjct: 268 AGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGAS 327

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S   + ++LI+MY+R G L+ +   F       VV W+++I  YG HG GE A++LF +M
Sbjct: 328 SVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEALELFHQM 387

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
               +  +   F+S+L ACSH+GL +KG EYF  M  KY L+P  EHYTC+VDLLGRAG+
Sbjct: 388 EDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAGR 447

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L EA  +I SM V+PDG +W  LL ACK+HK  E+AE    ++IKL+P++   YVLLSNI
Sbjct: 448 LEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMAERISEEIIKLDPLDAASYVLLSNI 507

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           ++ ARN   + ++R  MR+R ++K+PG S++ELK  VH F +GD++H Q  EI   L +L
Sbjct: 508 HASARNWLNVSQIRKAMRDRSVRKEPGISWLELKNLVHQFSMGDKSHPQYFEIDLYLKEL 567

Query: 421 ENLVQEHD-----GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRI 475
            + +++H      G+   D  N E+  N    HSEK AIAF ++NTS    I VMKNLR+
Sbjct: 568 MSELKQHGYVPELGSVLHDMDNEEKEYNLAH-HSEKFAIAFALMNTSENVPIRVMKNLRV 626

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           C DCH  IK +S+I +R+ IVRDA+RFHHFK G CSC +YW
Sbjct: 627 CDDCHNAIKCISRIRNREIIVRDASRFHHFKDGECSCGNYW 667



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 143/300 (47%), Gaps = 4/300 (1%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+  Y++ G ++  +KLFD++ E+ + TWNAMI+G  Q       L L++EM  LG  
Sbjct: 132 NILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFL 191

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           PD  T   VL  CA L +   G EV   +   GF  +  + ++L +MY + G+L     +
Sbjct: 192 PDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKL 251

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
              MP +TVV+W  +I G   +G  E  +  ++ M  +G RPD   FVSVLSACS     
Sbjct: 252 IKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATL 311

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
            +G +  +    K G        + ++ +  R+G L ++++         D  +W +++ 
Sbjct: 312 GQG-QQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDR-ENFDVVLWSSMIA 369

Query: 326 ACKIHKNVELAELAFGKV--IKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLK 383
           A   H   E A   F ++  +K+E     +  LL           G     +M+++ +LK
Sbjct: 370 AYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLK 429



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 100/217 (46%), Gaps = 24/217 (11%)

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
           +  D   F  +L SC  LG+   G +V   I  +G   + F++N L+N Y++ G  K + 
Sbjct: 58  IWSDPSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSL 117

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG 263
            +F  MPR+ V+S+  +I GY   G  E A +LFDEM +  I      + ++++  +   
Sbjct: 118 VLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNI----ATWNAMIAGLTQFE 173

Query: 264 LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPD------- 316
              + L  F   K  YGL   P+ +T    L G AG        + S+L   +       
Sbjct: 174 FNKQALSLF---KEMYGLGFLPDEFTLGSVLRGCAG--------LRSLLAGQEVHACLLK 222

Query: 317 -GAVWGALLGACKIHKNVELAELAFG-KVIKLEPMNT 351
            G    +++G+   H  ++   L+ G K+IK  P+ T
Sbjct: 223 CGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRT 259


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/506 (40%), Positives = 315/506 (62%), Gaps = 5/506 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + ++I+ YV   L S+A+ LF +M+ +GV  +  T+  ++  C     L  G   H  
Sbjct: 363 VSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSY 422

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G+  +  V N L+ MY KCGSV+  R +F ++P K +++WN MI GY+QN L    
Sbjct: 423 VIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEA 482

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           LEL+ +M+     PD +T   VL +CA L A   G E+   I   G+ S+  +  AL++M
Sbjct: 483 LELFLDMQK-QFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDM 541

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG L  A+ +FD +P+K ++SWT +I GYG+HG G  A+  F+EM  +GI PD ++F
Sbjct: 542 YAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSF 601

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            ++L+ACSH+GL ++G ++F  M+N+ G++P  EHY C+VDLL R G L++A + IESM 
Sbjct: 602 SAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMP 661

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           ++PD  +WG LL  C+IH +V+LAE     + +LEP NT YYV+L+N+Y+EA   + + +
Sbjct: 662 IKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKK 721

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           +R  M++R  K++PG S++E+ G+ ++F+ G+  H Q  +I  +L KL   +Q  D +  
Sbjct: 722 LRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKKIDVLLSKLTMQMQNEDYSSM 781

Query: 433 SDQKNSEEHLNDTEV----HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
                  E   + E+    HSEK A+AFGI+N  PG  + V KN R+CGDCH   K +SK
Sbjct: 782 FRYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPPGRTVRVSKNRRVCGDCHEMGKFMSK 841

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKD 514
               + ++RD+ RFHHFK G CSC+D
Sbjct: 842 TTKMEIVLRDSNRFHHFKDGLCSCRD 867



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/360 (30%), Positives = 188/360 (52%), Gaps = 7/360 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE   S    V +N++I+G V+N      + +F +M   GVE++  T++ +L  C + 
Sbjct: 252 LFDE--LSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANI 309

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L LG   H   VK     +    N L+ MY KCG+++   ++F ++ +  +++W ++I
Sbjct: 310 GNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSII 369

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           + Y + GL +  + L+ EM+S GV PD  T   ++ +CA   +   G +V   +  NG G
Sbjct: 370 AAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMG 429

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           SN  + NALINMYA+CG++++AR +F  +P K +VSW  +IGGY  +     A++LF +M
Sbjct: 430 SNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDM 489

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            K   +PD      VL AC+     DKG E  +G   + G          +VD+  + G 
Sbjct: 490 QKQ-FKPDDITMACVLPACAGLAALDKGRE-IHGHILRRGYFSDLHVACALVDMYAKCGL 547

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIH--KNVELAELAFGKVIKLEPMNTGYYVLLS 358
           L  A +L+  M+ + D   W  ++    +H   N  ++     ++  +EP  + +  +L+
Sbjct: 548 LVLA-QLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILN 606



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 150/305 (49%), Gaps = 4/305 (1%)

Query: 8   STH-LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLG 66
           +TH +T   NA I+ +     +  A+ L  K +   + +NS     +L +C +   L  G
Sbjct: 56  TTHSVTQNQNAKINKFCEMGDLRNAIELLTKSKSYELGLNSYC--SVLQLCAEKKSLEDG 113

Query: 67  MCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQN 126
              H + +  G+ +D ++G  L+ MYV CG +  GRK+FD++    +  WN ++S YA+ 
Sbjct: 114 KRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKI 173

Query: 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
           G     + L+++M+ LGV  +  TF  VL   A LG       V   +   GFGSN  + 
Sbjct: 174 GNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVV 233

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           N+LI  Y + G ++ A  +FD +    VVSW ++I G  ++G     +++F +ML  G+ 
Sbjct: 234 NSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVE 293

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
            D T  VSVL AC++ G    G    +G   K            ++D+  + G LN A E
Sbjct: 294 VDLTTLVSVLVACANIGNLSLG-RALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATE 352

Query: 307 LIESM 311
           +   M
Sbjct: 353 VFVKM 357



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 92/214 (42%), Gaps = 4/214 (1%)

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
           NA I+ + + G   + +EL  + KS  +  +  ++  VL  CA   +   G  V   I +
Sbjct: 65  NAKINKFCEMGDLRNAIELLTKSKSYELGLN--SYCSVLQLCAEKKSLEDGKRVHSVIIS 122

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
           NG   +  L   L+ MY  CG+L + R IFD +    V  W  ++  Y   G+   +V L
Sbjct: 123 NGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 182

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           F +M K G+  +   F  VL   +  G   K  +  +G   K G          ++    
Sbjct: 183 FKKMQKLGVVGNCYTFTCVLKCFAALGKV-KECKRVHGYVLKLGFGSNTAVVNSLIAAYF 241

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           + G +  A  L +  L EPD   W +++  C ++
Sbjct: 242 KFGGVESAHNLFDE-LSEPDVVSWNSMINGCVVN 274


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/507 (42%), Positives = 314/507 (61%), Gaps = 5/507 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +N +I G+  +   S AV LF +M     +  ++ T   L         + LG   H + 
Sbjct: 103 WNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVV 162

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           V+ G D    V N L+ MY   G  +   ++F+ +  +  + WN++I+G+A NG+    L
Sbjct: 163 VRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEAL 222

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
            LYREM S GV PD  T V +LS+C  LGA ++G  V   +   G   N   +NAL+++Y
Sbjct: 223 TLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLY 282

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
           ++CGN + A+ +FD M  ++VVSWT++I G  ++G G  A++LF E+ + G++P    FV
Sbjct: 283 SKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFV 342

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
            VL ACSH G+ D+G  YF  MK +YG+ P  EH+ CMVDLL RAG++ +A + I +M V
Sbjct: 343 GVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPV 402

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
            P+  +W  LLGAC IH ++EL E+A  ++ +LE  ++G +VLLSN+Y+  R    +  V
Sbjct: 403 PPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNV 462

Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS 433
           R +M  + +KK PGYS VELK RV+ F++GDR+H Q+ E Y ML K+  L++      R+
Sbjct: 463 RKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRT 522

Query: 434 DQ--KNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKI 489
                + EE   +T +  H+EK+AIAF ++NT PGT I +MKNLR+C DCHL IKL+SK+
Sbjct: 523 VNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKV 582

Query: 490 VDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +R+ IVRD +RFHHFK G CSCKDYW
Sbjct: 583 FEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 131/234 (55%), Gaps = 7/234 (2%)

Query: 6   IKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWL 65
           I S    V +N++I+G+ LN + +EA++L+ +M  +GVE +  TM+ LL  CV+ G L L
Sbjct: 196 IMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALAL 255

Query: 66  GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
           G   H   VK GL  +    N L+ +Y KCG+    +K+FD++ E+ +++W ++I G A 
Sbjct: 256 GERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAV 315

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
           NGL    L+L+ E++  G+ P  +TFVGVL +C+H G    G    ++++   +G  P +
Sbjct: 316 NGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEE-YGILPRI 374

Query: 186 NN--ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGH---GEVA 233
            +   ++++  R G +  A      MP     V W  ++G   IHGH   GEVA
Sbjct: 375 EHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVA 428



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 116/230 (50%), Gaps = 3/230 (1%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL-GVCPDAVTFVGV 154
             + +  ++F+Q+    + TWN MI G+A++   +  +EL+ +M +   + PD  TF  +
Sbjct: 83  APMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFL 142

Query: 155 LSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTV 214
             + A L   S+G  +   +  NGF S  F+ N+L++MY+  G  + A  +F+ M  +  
Sbjct: 143 FKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDR 202

Query: 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYG 274
           V+W ++I G+ ++G    A+ L+ EM   G+ PDG   VS+LSAC   G    G E  + 
Sbjct: 203 VAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALG-ERVHM 261

Query: 275 MKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
              K GL         ++DL  + G   +A ++ + M  E     W +L+
Sbjct: 262 YMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEM-EERSVVSWTSLI 310


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/554 (39%), Positives = 319/554 (57%), Gaps = 52/554 (9%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N +  GY   +     VSL+ +M E+ V+ +  T   L         L LG   HC  V
Sbjct: 82  WNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVV 141

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFD---------------------------- 106
           K+GLD +    N L+ MY  CG +D  R +FD                            
Sbjct: 142 KYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWT 201

Query: 107 --------------------QVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCP 146
                               ++PE+  ++W AMI GY +       L L+REM++  + P
Sbjct: 202 AIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKP 261

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF 206
           D  T V VL++CA LGA  +G  +   I  N   ++ F+ NALI+MY +CGN++ A +IF
Sbjct: 262 DEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIF 321

Query: 207 DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD 266
           + +P++   +WTA++ G  I+G GE A+ +F +MLK+ + PD   +V VLSAC+H G+ D
Sbjct: 322 NTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVD 381

Query: 267 KGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
           +G ++F  M  ++G++P   HY CMVDLLG+AG L EA E+I++M ++P+  VWGALLGA
Sbjct: 382 EGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGA 441

Query: 327 CKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDP 386
           C+IHK+ E+AE A  ++++LEP N   YVL  NIY+     D +  +R +M +R +KK P
Sbjct: 442 CRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTP 501

Query: 387 GYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQK----NSEEHL 442
           G S +E+ G VH F+ GD++H QT EIY  L+K+ + ++    +  + +       E+  
Sbjct: 502 GCSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGYSPNTSEVFLDIAEEDKE 561

Query: 443 NDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRF 502
           N    HSEKLAIAFG+IN+ PG  I ++KNLR+C DCH   KLVSK+ DR+ IVRD TRF
Sbjct: 562 NAVYRHSEKLAIAFGLINSGPGVTIRIVKNLRMCIDCHHVAKLVSKVYDREVIVRDRTRF 621

Query: 503 HHFKSGFCSCKDYW 516
           HHF+ G CSCKDYW
Sbjct: 622 HHFRHGSCSCKDYW 635



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 133/254 (52%), Gaps = 8/254 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+I GY+  +   EA+ LF +M+   ++ +  TM+ +L  C   G L LG      
Sbjct: 229 VSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTY 288

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K  +  D  VGN L+ MY KCG+V+    +F+ +P++   TW AM+ G A NG     
Sbjct: 289 IDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEA 348

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA-NGFGSNPFLNNALIN 191
           L ++ +M    V PD VT+VGVLS+C H G    G +    + A +G   N      +++
Sbjct: 349 LNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVD 408

Query: 192 MYARCGNLKKARAIFDGMPRK-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP-DG 249
           +  + G+LK+A  I   MP K   + W A++G   IH   E+A +  +++L+  + P +G
Sbjct: 409 LLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILE--LEPNNG 466

Query: 250 TAFV---SVLSACS 260
             +V   ++ +AC+
Sbjct: 467 AVYVLQCNIYAACN 480



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 132/313 (42%), Gaps = 52/313 (16%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
           G + Y R+LFD +PE  + +WN M  GY++       + LY EM    V PD  T+  + 
Sbjct: 62  GDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLF 121

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD-------- 207
                  A  +G E+   +   G  SN F +NALINMY+ CG +  AR IFD        
Sbjct: 122 KGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVV 181

Query: 208 ----------------------------------------GMPRKTVVSWTAIIGGYGIH 227
                                                    MP +  VSWTA+I GY   
Sbjct: 182 TWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRL 241

Query: 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH 287
              + A+ LF EM  S I+PD    VSVL+AC+  G  + G E+     +K  ++     
Sbjct: 242 NCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELG-EWIRTYIDKNKVKNDTFV 300

Query: 288 YTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK-- 345
              ++D+  + G +  AL +  + L + D   W A++    I+   E A   F +++K  
Sbjct: 301 GNALIDMYFKCGNVEMALSIFNT-LPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKAS 359

Query: 346 LEPMNTGYYVLLS 358
           + P    Y  +LS
Sbjct: 360 VTPDEVTYVGVLS 372


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/510 (40%), Positives = 321/510 (62%), Gaps = 9/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A++S Y  N    EA+ +F +MR+  V+ + V ++ +L        L  G   H  
Sbjct: 188 VSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHAS 247

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK GL+++  +   L TMY KCG V   + LFD++    LI WNAMISGYA+NG A   
Sbjct: 248 VVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREA 307

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           ++++ EM +  V PD ++    +S+CA +G+      + + +  + +  + F+++ALI+M
Sbjct: 308 IDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDM 367

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           +A+CG+++ AR +FD    + VV W+A+I GYG+HG    A+ L+  M + G+ P+   F
Sbjct: 368 FAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTF 427

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + +L AC+H+G+  +G  +F  M + + + P  +HY C++DLLGRAG L++A E+I+ M 
Sbjct: 428 LGLLMACNHSGMVREGWWFFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMP 486

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           V+P   VWGALL ACK H++VEL E A  ++  ++P NTG+YV LSN+Y+ AR  D +  
Sbjct: 487 VQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAE 546

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR+ M+E+ L KD G S+VE++GR+  F VGD++H +  EI R ++ +E+ ++E  G   
Sbjct: 547 VRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKE--GGFV 604

Query: 433 SDQKNSEEHLNDTEV------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
           +++  S   LND E       HSE++AIA+G+I+T  GT + + KNLR C +CH   KL+
Sbjct: 605 ANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLI 664

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SK+VDR+ +VRD  RFHHFK G CSC DYW
Sbjct: 665 SKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 160/319 (50%), Gaps = 6/319 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NA+I GY  N+   +A+ ++  M+   V  +S T   LL  C    +L +G   H    
Sbjct: 87  WNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVF 146

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFD--QVPEKGLITWNAMISGYAQNGLATHV 132
           + G D D  V N L+ +Y KC  +   R +F+   +PE+ +++W A++S YAQNG     
Sbjct: 147 RLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEA 206

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           LE++ +M+ + V PD V  V VL++   L     G  +   +   G    P L  +L  M
Sbjct: 207 LEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTM 266

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG +  A+ +FD M    ++ W A+I GY  +G+   A+ +F EM+   +RPD  + 
Sbjct: 267 YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISI 326

Query: 253 VSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            S +SAC+  G  ++    Y Y  ++ Y  +      + ++D+  + G + E   L+   
Sbjct: 327 TSAISACAQVGSLEQARSMYEYVGRSDY--RDDVFISSALIDMFAKCGSV-EGARLVFDR 383

Query: 312 LVEPDGAVWGALLGACKIH 330
            ++ D  VW A++    +H
Sbjct: 384 TLDRDVVVWSAMIVGYGLH 402



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 125/232 (53%), Gaps = 4/232 (1%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
           G + + R++FD +P   +  WNA+I GY++N      L +Y  M+   V PD+ TF  +L
Sbjct: 67  GDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLL 126

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG--MPRKT 213
            +C+ L    +G  V  Q+   GF ++ F+ N LI +YA+C  L  AR +F+G  +P +T
Sbjct: 127 KACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERT 186

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
           +VSWTAI+  Y  +G    A+++F +M K  ++PD  A VSVL+A +      +G    +
Sbjct: 187 IVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQG-RSIH 245

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
               K GL+  P+    +  +  + GQ+  A  L + M   P+  +W A++ 
Sbjct: 246 ASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKM-KSPNLILWNAMIS 296



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 39/214 (18%)

Query: 172 QQIQAN----GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH 227
           +QI A     G   + FL   LI+  +  G++  AR +FD +PR  +  W AII GY  +
Sbjct: 38  KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97

Query: 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS-----------HAGL----------TD 266
            H + A+ ++  M  + + PD   F  +L ACS           HA +            
Sbjct: 98  NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQ 157

Query: 267 KGLEYFYGMKNKYGLQ-------PGPEH----YTCMVDLLGRAGQLNEALELIESML--- 312
            GL   Y    + G         P PE     +T +V    + G+  EALE+   M    
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMD 217

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
           V+PD     ++L A    ++++        V+K+
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKM 251


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/526 (41%), Positives = 313/526 (59%), Gaps = 12/526 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD++ K T     +NAL     L    ++ + L+ +M   GV  +  T   LL  CV  
Sbjct: 126 VFDKTRKRT--IYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVAS 183

Query: 61  ----GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
                +L  G   H   ++ G      V   LM MY + G V Y   +FD++P K +++W
Sbjct: 184 ECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSW 243

Query: 117 NAMISGYAQNGLATHVLELYREM--KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
           +AMI+ YA+NG     LEL+REM   +    P++VT V VL +CA   A   G  +   I
Sbjct: 244 SAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYI 303

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
              G  S   + +ALI MYARCG L+  + IFD M +K VV W ++I  YG+HG+G  A+
Sbjct: 304 LRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAI 363

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
           ++F+EM+  G  P   +F+SVL ACSH GL ++G + F  M  ++G+QP  EHY CMVDL
Sbjct: 364 KIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDL 423

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           LGRA +L+EA ++IE + +EP   VWG+LLGAC+IH +VELAE A  ++ KLEP N G Y
Sbjct: 424 LGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVELAERASKRLFKLEPTNAGNY 483

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
           VLL++IY+EA   D + RV+ ++  R L+K PG S++E++ +++ F   D  + Q  +++
Sbjct: 484 VLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGRSWIEVRRKIYSFTSVDEFNPQGEQLH 543

Query: 415 RMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVM 470
            +L  L N +++   T ++       + EE       HSEKLA+AFG+INTS G  I + 
Sbjct: 544 ALLVNLSNEMKQRGYTPQTKLVLYDLDQEEKERIVLGHSEKLAVAFGLINTSKGDTIRIT 603

Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KNLR+C DCH   K +SK  DR+ +VRD  RFHHFK G CSC DYW
Sbjct: 604 KNLRLCEDCHSVTKFISKFADREIMVRDLNRFHHFKDGVCSCGDYW 649



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 136/268 (50%), Gaps = 10/268 (3%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H + V  G D D  +   L+ M+ +  +VD  RK+FD+  ++ +  WNA+    A  G  
Sbjct: 92  HQLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRG 151

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAH----LGAHSVGLEVEQQIQANGFGSNPFL 185
             VLELY  M  +GV  D  T+  +L +C      +     G E+   I  +G+G++  +
Sbjct: 152 NDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHV 211

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML--KS 243
              L++MYAR G +  A A+FD MP K VVSW+A+I  Y  +G    A++LF EM+    
Sbjct: 212 MTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTH 271

Query: 244 GIRPDGTAFVSVLSAC-SHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
              P+    VSVL AC + A L    L + Y ++   GL       + ++ +  R G+L 
Sbjct: 272 DSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRR--GLDSILPVISALITMYARCGKL- 328

Query: 303 EALELIESMLVEPDGAVWGALLGACKIH 330
           E+ +LI   + + D  +W +L+ +  +H
Sbjct: 329 ESGQLIFDRMHKKDVVLWNSLISSYGLH 356



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 9/187 (4%)

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P   T   ++ S A   + S  L+V Q +   GF  +PFL   LINM++    +  AR +
Sbjct: 67  PTQQTCELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKV 126

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA--- 262
           FD   ++T+  W A+     + G G   ++L+  M   G+  D   +  +L AC  +   
Sbjct: 127 FDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECL 186

Query: 263 -GLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320
                KG E + + +++ YG        T ++D+  R G ++ A  + + M V+ +   W
Sbjct: 187 VSFLQKGKEIHAHILRHGYGAH--VHVMTTLMDMYARFGCVSYASAVFDEMPVK-NVVSW 243

Query: 321 GALLGAC 327
            A++ AC
Sbjct: 244 SAMI-AC 249


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/545 (39%), Positives = 321/545 (58%), Gaps = 45/545 (8%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V ++ +I GY  + L ++A+ LF +M+   VE + + +  +L  C   G L  G   H 
Sbjct: 188 VVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHD 247

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYG------------------------------ 101
             ++  + +D  + + L+TMY  CGS+D                                
Sbjct: 248 FIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIEN 307

Query: 102 -RKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160
            R +F+Q+ +K L+ W+AMISGYA++      L L+ EM+SLG+ PD VT + V+++CAH
Sbjct: 308 ARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAH 367

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           LGA      +   +  NGFG    +NNALI MYA+CG+L++AR IFD MPRK V+SWT +
Sbjct: 368 LGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCM 427

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           I  + +HG    A++ F +M    I P+G  FV VL ACSHAGL ++G + FY M N++ 
Sbjct: 428 ISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHN 487

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           + P   HY CMVDL GRA  L EALEL+E+M + P+  +WG+L+ AC++H  +EL E A 
Sbjct: 488 ITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAA 547

Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400
            ++++L+P + G +V LSNIY++AR  + + +VR +M+ + + K+ G S  EL   +H F
Sbjct: 548 KRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEF 607

Query: 401 MVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEV---------HSEK 451
           +V DR+H    EIY   +KL  +V +      S   N+   L D E          HSEK
Sbjct: 608 LVADRSHKHADEIY---EKLYEVVSKLKLVGYS--PNTCSILVDLEEEEKKEVVLWHSEK 662

Query: 452 LAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCS 511
           LA+ +G++    G+ I ++KNLR+C DCH FIKL SK+ +R+ +VRD TRFHH+K G CS
Sbjct: 663 LALCYGLMRDGTGSCIRIIKNLRVCEDCHTFIKLASKVYEREIVVRDRTRFHHYKDGVCS 722

Query: 512 CKDYW 516
           CKDYW
Sbjct: 723 CKDYW 727



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 155/330 (46%), Gaps = 37/330 (11%)

Query: 34  LFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYV 93
           ++ +MR QG+ ++  +   LL        L  G+  H +  K G D D  V   L+ MY 
Sbjct: 109 VYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYA 168

Query: 94  KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVG 153
            CG +   R +FD++  + ++TW+ MI GY Q+GL    L L+ EMK+  V PD +    
Sbjct: 169 ACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLST 228

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNL-------------- 199
           VLS+C   G  S G  +   I  N    +P L +AL+ MYA CG++              
Sbjct: 229 VLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKN 288

Query: 200 -----------------KKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
                            + AR++F+ M +K +V W+A+I GY      + A+ LF+EM  
Sbjct: 289 LVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQS 348

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
            GI+PD    +SV++AC+H G  D+  ++ +   +K G          ++++  + G L 
Sbjct: 349 LGIKPDQVTMLSVITACAHLGALDQA-KWIHLFVDKNGFGGALPINNALIEMYAKCGSLE 407

Query: 303 EALELIESMLVEPDGAV--WGALLGACKIH 330
            A  + + M   P   V  W  ++ A  +H
Sbjct: 408 RARRIFDKM---PRKNVISWTCMISAFAMH 434



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 125/251 (49%), Gaps = 4/251 (1%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
            S+DY   +F+ +P+      N  +   +++      L +Y  M++ G+  D  +F  +L
Sbjct: 70  SSLDYALSVFNLIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLL 129

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
            + + + +   GLE+       GF S+PF+   L+ MYA CG + +AR +FD M  + VV
Sbjct: 130 KALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVV 189

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG-LTDKGLEYFYG 274
           +W+ +I GY   G    A+ LF+EM    + PD     +VLSAC  AG L+   + + + 
Sbjct: 190 TWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFI 249

Query: 275 MKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVE 334
           M+N   + P  +  + +V +    G ++ AL L E M  +   A    + G  K+ + +E
Sbjct: 250 MENNIVVDPHLQ--SALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQ-IE 306

Query: 335 LAELAFGKVIK 345
            A   F +++K
Sbjct: 307 NARSVFNQMVK 317


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/508 (41%), Positives = 305/508 (60%), Gaps = 5/508 (0%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
            V + +LI+ YV   L  +A+ LF +M  +GV  +  +M  +L  C     L  G   H  
Sbjct: 721  VSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNY 780

Query: 73   CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
              K  + L   V N LM MY KCGS++    +F Q+P K +++WN MI GY++N L    
Sbjct: 781  IRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEA 840

Query: 133  LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            L+L+ EM+     PD +T   +L +C  L A  +G  +   I  NG+ S   + NALI+M
Sbjct: 841  LKLFAEMQKESR-PDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDM 899

Query: 193  YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
            Y +CG+L  AR +FD +P K +++WT +I G G+HG G  A+  F +M  +GI+PD   F
Sbjct: 900  YVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITF 959

Query: 253  VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
             S+L ACSH+GL ++G  +F  M ++  ++P  EHY CMVDLL R G L++A  LIE+M 
Sbjct: 960  TSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMP 1019

Query: 313  VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            ++PD  +WGALL  C+IH +VELAE     V +LEP N GYYVLL+NIY+EA   + + +
Sbjct: 1020 IKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKK 1079

Query: 373  VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE--HDGT 430
            +R  + +R LKK PG S++E++G+   F+  D  H Q   I+ +L+ L   ++   H   
Sbjct: 1080 LRERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSIFSLLNNLRIKMKNEGHSPK 1139

Query: 431  KRSDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
             R    N+ +   +  +  HSEKLA+AFGI+N   G  I V KNLR+C DCH   K +SK
Sbjct: 1140 MRYALINAGDMEKEVALCGHSEKLAMAFGILNLPSGRTIRVAKNLRVCDDCHEMAKFMSK 1199

Query: 489  IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
               R+ I+RD+ RFHHFK GFCSC+D+W
Sbjct: 1200 TTRREIILRDSNRFHHFKDGFCSCRDFW 1227



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 108/326 (33%), Positives = 167/326 (51%), Gaps = 5/326 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD  I S +    +N ++S Y       E++ LF KM++ G+  NS T  C+L      
Sbjct: 508 IFDH-ILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATL 566

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G +      H    K G     +V N L+  Y K G VD   KLFD++ ++ +++WN+MI
Sbjct: 567 GRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMI 626

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SG   NG +   LE + +M  L V  D  T V  +++CA++G+ S+G  +  Q     F 
Sbjct: 627 SGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFS 686

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
                NN L++MY++CGNL  A   F+ M +KTVVSWT++I  Y   G  + A++LF EM
Sbjct: 687 REVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEM 746

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
              G+ PD  +  SVL AC+     DKG + + Y  KN   L     +   ++D+  + G
Sbjct: 747 ESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSN--ALMDMYAKCG 804

Query: 300 QLNEALELIESMLVEPDGAVWGALLG 325
            + EA  L+ S +   D   W  ++G
Sbjct: 805 SMEEAY-LVFSQIPVKDIVSWNTMIG 829



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 173/347 (49%), Gaps = 5/347 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++ISG V+N     A+  F +M    V ++  T++  +  C + G L LG   H  
Sbjct: 620 VSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQ 679

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK     +    N L+ MY KCG+++   + F+++ +K +++W ++I+ Y + GL    
Sbjct: 680 GVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDA 739

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + L+ EM+S GV PD  +   VL +CA   +   G +V   I+ N       ++NAL++M
Sbjct: 740 IRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDM 799

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG++++A  +F  +P K +VSW  +IGGY  +     A++LF EM K   RPDG   
Sbjct: 800 YAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITM 858

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
             +L AC      + G    +G   + G          ++D+  + G L  A  L+  M+
Sbjct: 859 ACLLPACGSLAALEIG-RGIHGCILRNGYSSELHVANALIDMYVKCGSLVHA-RLLFDMI 916

Query: 313 VEPDGAVWGALLGACKIH--KNVELAELAFGKVIKLEPMNTGYYVLL 357
            E D   W  ++  C +H   N  +A     ++  ++P    +  +L
Sbjct: 917 PEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSIL 963



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 146/297 (49%), Gaps = 5/297 (1%)

Query: 31  AVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90
           AV L    ++  +++N+ +   +L +C +   L  G   H +    G+ ++  +G  L+ 
Sbjct: 437 AVELLRMSQKSELDLNAYS--SILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVF 494

Query: 91  MYVKCGSVDYGRKLFDQV-PEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
           MYV CG++  GR++FD +  +  +  WN M+S YA+ G     + L+++M+ LG+  ++ 
Sbjct: 495 MYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSY 554

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
           TF  +L   A LG       +   +   GFGS   + N+LI  Y + G +  A  +FD +
Sbjct: 555 TFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDEL 614

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
             + VVSW ++I G  ++G    A++ F +ML   +  D    V+ ++AC++ G    G 
Sbjct: 615 GDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLG- 673

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
              +G   K            ++D+  + G LN+A++  E M  +     W +L+ A
Sbjct: 674 RALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKM-GQKTVVSWTSLIAA 729


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/521 (42%), Positives = 316/521 (60%), Gaps = 7/521 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVD 59
           VFD+    T   V +  +I  +      +EAV LF +M + + V+ N VT++ +L  C  
Sbjct: 142 VFDKMEDKT--VVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACAR 199

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              L +    H    + G      +   LM +Y KCG V   R LFD+  EK L +WN M
Sbjct: 200 ARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIM 259

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I+G+ ++      L L+REM++ G+  D VT   +L +C HLGA  +G  +   I+    
Sbjct: 260 INGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRI 319

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             +  L  AL++MYA+CG+++ A  +F  MP K V++WTA+I G  + G  E A+Q FDE
Sbjct: 320 DVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDE 379

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M   G++PD   FV VL+ACSHAG  D+G+ +F  M + YG+QP  EHY  +VD+LGRAG
Sbjct: 380 MHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAG 439

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
           ++ EA ELI+SM + PD  V G LLGAC+IH N+E AE A  ++++++P ++G YVLLSN
Sbjct: 440 RIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSN 499

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD- 418
           IY  ++  +   R R +M ER ++K PG S +E+ G VH F+ GD +H Q+ EI  ML+ 
Sbjct: 500 IYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHGVVHEFVKGDSSHRQSSEINEMLED 559

Query: 419 ---KLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRI 475
              KL+N     D ++       EE   +  +HSEKLAIAFG+++TS GT I V+KNLRI
Sbjct: 560 MISKLKNAGYVPDKSEVLFDMAEEEKETELSLHSEKLAIAFGLLSTSVGTPIRVVKNLRI 619

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           C DCH   KL+SK+ +R+ IVRD  RFHHFK G CSC+ +W
Sbjct: 620 CSDCHSATKLISKLYNREIIVRDRNRFHHFKDGTCSCRGFW 660



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 158/325 (48%), Gaps = 8/325 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF +    T  T   N++I G    +L  EA+  + +M  QG+  +  T   L   C + 
Sbjct: 44  VFSQIPNPTSYTC--NSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNS 101

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
                G   HC   K G   D    N LM MY  CG +   RK+FD++ +K +++W  MI
Sbjct: 102 SE---GKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMI 158

Query: 121 SGYAQNGLATHVLELY-REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
             +AQ       + L+ R MKS  V P+ VT V VL++CA     ++   + + I  +GF
Sbjct: 159 GVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGF 218

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
           G +  LN  L+++Y +CG ++ AR +FD    K + SW  +I G+    + E A+ LF E
Sbjct: 219 GRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFRE 278

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M   GI+ D     S+L AC+H G  + G ++ +    K  +       T +VD+  + G
Sbjct: 279 MQTKGIKGDKVTMASLLLACTHLGALELG-KWLHAYIKKQRIDVDVALGTALVDMYAKCG 337

Query: 300 QLNEALELIESMLVEPDGAVWGALL 324
            +  A+++   M  E D   W AL+
Sbjct: 338 SIETAIQVFHEM-PEKDVMTWTALI 361



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 90/168 (53%), Gaps = 4/168 (2%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
           GS+ Y R +F Q+P     T N++I G     L    L  Y+EM   G+ PD  TF  + 
Sbjct: 36  GSLQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLF 95

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
            SC +    S G ++       GF S+ +  N L+NMY+ CG L  AR +FD M  KTVV
Sbjct: 96  KSCRN---SSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVV 152

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKS-GIRPDGTAFVSVLSACSHA 262
           SW  +IG +        AV+LFD M+KS  ++P+    V+VL+AC+ A
Sbjct: 153 SWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARA 200


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/527 (42%), Positives = 315/527 (59%), Gaps = 28/527 (5%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD- 59
           +F+ES      T  + A++SGYV N ++ EA  +F  M E+    NSV+   ++   V  
Sbjct: 176 LFEESPVRDVFT--WTAMVSGYVQNGMLDEARRVFDGMPEK----NSVSWNAIIAGYVQC 229

Query: 60  -----PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLI 114
                   L+  M C  +          S  N ++T Y + G +   R  FD++P++  I
Sbjct: 230 KRMDQARELFEAMPCQNV----------SSWNTMITGYAQNGDIAQARNFFDRMPQRDSI 279

Query: 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
           +W A+I+GYAQ+G     L L+ EMK  G   +  TF   LS+CA + A  +G +V  ++
Sbjct: 280 SWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRV 339

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
              G  S  ++ NAL+ MY +CGN+  A  +F+G+  K VVSW  +I GY  HG G+ A+
Sbjct: 340 VKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEAL 399

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
            LF+ M K+GI PD    V VLSACSH GL DKG EYFY M   YG+    +HYTCM+DL
Sbjct: 400 MLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDL 459

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           LGRAG+L++A  L+++M  EPD A WGALLGA +IH N EL E A   + ++EP N+G Y
Sbjct: 460 LGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMY 519

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
           VLLSN+Y+ +     + R+R+ MR+R +KK PGYS+VE++ ++H F VGD  H +   IY
Sbjct: 520 VLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIY 579

Query: 415 RMLDKLENLVQEHDGTKRSDQ-----KNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVV 469
             L++L +L  + +G   S +        EE ++  + HSEKLA+AFGI+    G  I V
Sbjct: 580 TFLEEL-DLKMKKEGYVSSTKLVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRV 638

Query: 470 MKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +KNLR+C DCH  +K +SKIV R  I+RD+ RFHHF  G CSC DYW
Sbjct: 639 IKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCGDYW 685



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 156/345 (45%), Gaps = 41/345 (11%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA++SGY  N  V EA  +F +M  +    NS++   +L   V  G +         
Sbjct: 62  VSWNAMLSGYAQNGYVKEAKEIFDEMPCK----NSISWNGMLAAYVQNGRIEDAR----R 113

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             +   D +    NC+M  YVK   +   R +FD++PE+  ++WN MISGYAQNG     
Sbjct: 114 LFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEA 173

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLG----AHSV--GLEVEQQIQANG-------- 178
             L+ E        D  T+  ++S     G    A  V  G+  +  +  N         
Sbjct: 174 QRLFEE----SPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQC 229

Query: 179 ---------FGSNPFLN----NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYG 225
                    F + P  N    N +I  YA+ G++ +AR  FD MP++  +SW AII GY 
Sbjct: 230 KRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYA 289

Query: 226 IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
             G+GE A+ LF EM + G R + + F S LS C+     + G +  +G   K GL+ G 
Sbjct: 290 QSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQ-VHGRVVKAGLESGC 348

Query: 286 EHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
                ++ +  + G +++A  + E  + E +   W  ++     H
Sbjct: 349 YVGNALLVMYCKCGNIDDAYIVFEG-IEEKEVVSWNTMIAGYARH 392



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 112/219 (51%), Gaps = 17/219 (7%)

Query: 93  VKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFV 152
           V+  ++   R LFDQ+PE+ +++WNAM+SGYAQNG      E++ EM     C +++++ 
Sbjct: 41  VRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMP----CKNSISWN 96

Query: 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK 212
           G+L++    G     +E  +++  +         N ++  Y +   L  AR IFD MP +
Sbjct: 97  GMLAAYVQNGR----IEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPER 152

Query: 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF 272
             VSW  +I GY  +G    A +LF+E   S +R D   + +++S     G+ D+    F
Sbjct: 153 DEVSWNTMISGYAQNGELLEAQRLFEE---SPVR-DVFTWTAMVSGYVQNGMLDEARRVF 208

Query: 273 YGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            GM  K  +      +  ++    +  ++++A EL E+M
Sbjct: 209 DGMPEKNSVS-----WNAIIAGYVQCKRMDQARELFEAM 242


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/511 (41%), Positives = 307/511 (60%), Gaps = 7/511 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+I+GYV N    EA+ LF +M    V  +  T++ +L  C   G + LG   H +
Sbjct: 181 VSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTL 240

Query: 73  CVKF-GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                G      + N  + +Y KCG V+    LF+ +  K +++WN +I GY    L   
Sbjct: 241 VDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKE 300

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI--QANGFGSNPFLNNAL 189
            L L++EM   G  P+ VT + VL +CAHLGA  +G  +   I  +  G  +   L  +L
Sbjct: 301 ALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSL 360

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           I+MYA+CG+++ A  +F+ M  K++ SW A+I G+ +HG    A  LF  M K+GI PD 
Sbjct: 361 IDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDD 420

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
              V +LSACSH+GL D G   F  +   Y + P  EHY CM+DLLG AG   EA E+I 
Sbjct: 421 ITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIH 480

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDG 369
            M +EPDG +W +LL ACK+H N+ELAE    K++++EP N+G YVLLSNIY+ A   + 
Sbjct: 481 MMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWED 540

Query: 370 IMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH-- 427
           + R+R ++  + +KK PG S +E+   VH F++GD+ H Q+ EIYRML++++ L++E   
Sbjct: 541 VARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSREIYRMLEEMDVLLEEAGF 600

Query: 428 --DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
             D ++   +   E        HSEKLAIAFG+I+T PGT++ V+KNLR+C +CH   KL
Sbjct: 601 VPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTVVKNLRVCRNCHEATKL 660

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +SKI  R+ + RD TRFHHF+ G CSC DYW
Sbjct: 661 ISKIYKREIVARDRTRFHHFRDGVCSCCDYW 691



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 180/379 (47%), Gaps = 36/379 (9%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N ++ G   +S +   + ++ +M   G   N+ T   LL  C        G   H   +
Sbjct: 51  WNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVM 110

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ--------- 125
           K G +LD      L++MY + G ++  RK+FD   ++ +++  A+I+GYA          
Sbjct: 111 KLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARK 170

Query: 126 -------------NGLAT---------HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163
                        N + T           LEL++EM    V PD  T V VLS+CA  G+
Sbjct: 171 VFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGS 230

Query: 164 HSVGLEVEQQIQA-NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIG 222
             +G E+   +   +GFGS+  + NA I +Y++CG+++ A  +F+G+  K VVSW  +IG
Sbjct: 231 IELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIG 290

Query: 223 GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGL 281
           GY      + A+ LF EML+SG  P+    +SVL AC+H G  D G   + Y  K   G+
Sbjct: 291 GYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGV 350

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG 341
             G    T ++D+  + G +  A ++  SM+     + W A++    +H     A   F 
Sbjct: 351 TNGSALRTSLIDMYAKCGDIEAAHQVFNSMM-HKSLSSWNAMIFGFAMHGRANAAFDLFS 409

Query: 342 KVIK--LEPMNTGYYVLLS 358
           ++ K  +EP +     LLS
Sbjct: 410 RMRKNGIEPDDITLVGLLS 428



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 116/257 (45%), Gaps = 32/257 (12%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           Y   +F+   E  L+ WN M+ G A +      LE+Y  M S G  P+A TF  +L SCA
Sbjct: 35  YAVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCA 94

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
                  G ++  Q+   G   + + + +LI+MYAR G L+ AR +FD   ++ VVS TA
Sbjct: 95  KSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTA 154

Query: 220 IIGGYGIHGH-------------------------------GEVAVQLFDEMLKSGIRPD 248
           +I GY   G                                 E A++LF EM+++ +RPD
Sbjct: 155 LITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPD 214

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
               VSVLSAC+ +G  + G E    + + +G     +     + L  + G +  A  L 
Sbjct: 215 EGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLF 274

Query: 309 ESMLVEPDGAVWGALLG 325
           E +  + D   W  L+G
Sbjct: 275 EGLSCK-DVVSWNTLIG 290


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/510 (40%), Positives = 320/510 (62%), Gaps = 9/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A++S Y  N    EA+ +F  MR+  V+ + V ++ +L        L  G   H  
Sbjct: 188 VSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHAS 247

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK GL+++  +   L TMY KCG V   + LFD++    LI WNAMISGYA+NG A   
Sbjct: 248 VVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREA 307

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           ++++ EM +  V PD ++    +S+CA +G+      + + +  + +  + F+++ALI+M
Sbjct: 308 IDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDM 367

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           +A+CG+++ AR +FD    + VV W+A+I GYG+HG    A+ L+  M + G+ P+   F
Sbjct: 368 FAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTF 427

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + +L AC+H+G+  +G  +F+ +   + + P  +HY C++DLLGRAG L++A E+I+ M 
Sbjct: 428 LGLLMACNHSGMVREGW-WFFNLMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMP 486

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           V+P   VWGALL ACK H++VEL E A  ++  ++P NTG+YV LSN+Y+ AR  D +  
Sbjct: 487 VQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAE 546

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR+ M+E+ L KD G S+VE++GR+  F VGD++H +  EI R ++ +E+ ++E  G   
Sbjct: 547 VRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKE--GGFV 604

Query: 433 SDQKNSEEHLNDTEV------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
           +++  S   LND E       HSE++AIA+G+I+T  GT + + KNLR C +CH   KL+
Sbjct: 605 ANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLI 664

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SK+VDR+ +VRD  RFHHFK G CSC DYW
Sbjct: 665 SKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 159/319 (49%), Gaps = 6/319 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NA+I GY  N+   +A+ ++  M+   V  +S T   LL  C    +L +G   H    
Sbjct: 87  WNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVF 146

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFD--QVPEKGLITWNAMISGYAQNGLATHV 132
           + G D D  V N L+ +Y KC  +   R +F+   +PE+ +++W A++S YAQNG     
Sbjct: 147 RLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEA 206

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           LE++  M+ + V PD V  V VL++   L     G  +   +   G    P L  +L  M
Sbjct: 207 LEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTM 266

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG +  A+ +FD M    ++ W A+I GY  +G+   A+ +F EM+   +RPD  + 
Sbjct: 267 YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISI 326

Query: 253 VSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            S +SAC+  G  ++    Y Y  ++ Y  +      + ++D+  + G + E   L+   
Sbjct: 327 TSAISACAQVGSLEQARSMYEYVGRSDY--RDDVFISSALIDMFAKCGSV-EGARLVFDR 383

Query: 312 LVEPDGAVWGALLGACKIH 330
            ++ D  VW A++    +H
Sbjct: 384 TLDRDVVVWSAMIVGYGLH 402



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 4/232 (1%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
           G + + R++FD +P   +  WNA+I GY++N      L +Y  M+   V PD+ TF  +L
Sbjct: 67  GDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLL 126

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG--MPRKT 213
            +C+ L    +G  V  Q+   GF ++ F+ N LI +YA+C  L  AR +F+G  +P +T
Sbjct: 127 KACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERT 186

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
           +VSWTAI+  Y  +G    A+++F  M K  ++PD  A VSVL+A +      +G    +
Sbjct: 187 IVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQG-RSIH 245

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
               K GL+  P+    +  +  + GQ+  A  L + M   P+  +W A++ 
Sbjct: 246 ASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKM-KSPNLILWNAMIS 296



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 89/214 (41%), Gaps = 39/214 (18%)

Query: 172 QQIQAN----GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH 227
           +QI A     G   + FL   LI+  +  G++  AR +FD +PR  +  W AII GY  +
Sbjct: 38  KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97

Query: 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS-----------HAGL----------TD 266
            H + A+ ++  M  + + PD   F  +L ACS           HA +            
Sbjct: 98  NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQ 157

Query: 267 KGLEYFYGMKNKYGLQ-------PGPEH----YTCMVDLLGRAGQLNEALEL---IESML 312
            GL   Y    + G         P PE     +T +V    + G+  EALE+   +  M 
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMD 217

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
           V+PD     ++L A    ++++        V+K+
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKM 251


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/521 (41%), Positives = 319/521 (61%), Gaps = 21/521 (4%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +NA+I+GY  N    EA+ LF  M E  G+  NS TM  ++P CV  G        H   
Sbjct: 372 WNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFV 431

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           VK GLD D  V N LM MY + G +D   ++F ++ ++ L+TWN MI+GY  +      L
Sbjct: 432 VKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDAL 491

Query: 134 ELYREMKSL-----------GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN 182
            L  +M++L            + P+++T + +L SCA L A + G E+      N   ++
Sbjct: 492 LLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATD 551

Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
             + +AL++MYA+CG L+ +R +FD +P+K V++W  II  YG+HG+G+ A+ L   M+ 
Sbjct: 552 VAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMV 611

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
            G++P+   F+SV +ACSH+G+ D+GL  FY MK  YG++P  +HY C+VDLLGRAG++ 
Sbjct: 612 QGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIK 671

Query: 303 EALELIESMLVEPDGA-VWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY 361
           EA +L+  M  + + A  W +LLGA +IH N+E+ E+A   +I+LEP    +YVLL+NIY
Sbjct: 672 EAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIY 731

Query: 362 SEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLE 421
           S A   D    VR  M+E+ ++K+PG S++E    VH F+ GD +H Q+ ++   L+ L 
Sbjct: 732 SSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLW 791

Query: 422 NLVQEHDGTKRSD--QKNSEEHLNDTEV----HSEKLAIAFGIINTSPGTEIVVMKNLRI 475
             +++      +     N EE  ++ E+    HSEKLAIAFGI+NTSPGT I V KNLR+
Sbjct: 792 ERMRKEGYVPDTSCVLHNVEE--DEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRV 849

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           C DCHL  K +SKIVDR+ I+RD  RFH FK+G CSC DYW
Sbjct: 850 CNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 163/352 (46%), Gaps = 10/352 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD- 59
           VFD    S    V +N+LIS          A+  F  M ++ VE +S T++ ++  C + 
Sbjct: 155 VFDRI--SERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 212

Query: 60  --PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWN 117
             P  L +G   H   ++ G +L+  + N L+ MY K G +   + L      + L+TWN
Sbjct: 213 PMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWN 271

Query: 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
            ++S   QN      LE  REM   GV PD  T   VL +C+HL     G E+      N
Sbjct: 272 TVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKN 331

Query: 178 G-FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
           G    N F+ +AL++MY  C  +   R +FDGM  + +  W A+I GY  + H + A+ L
Sbjct: 332 GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLL 391

Query: 237 FDEMLKS-GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295
           F  M +S G+  + T    V+ AC  +G   +  E  +G   K GL         ++D+ 
Sbjct: 392 FIGMEESAGLLANSTTMAGVVPACVRSGAFSRK-EAIHGFVVKRGLDRDRFVQNTLMDMY 450

Query: 296 GRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE 347
            R G+++ A+ +   M  + D   W  ++      ++ E A L   K+  LE
Sbjct: 451 SRLGKIDIAMRIFGKM-EDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLE 501



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 152/328 (46%), Gaps = 8/328 (2%)

Query: 18  LISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFG 77
           L+   V ++L+ EAV  +  M   G++ ++     LL    D   + LG   H    KFG
Sbjct: 68  LLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFG 127

Query: 78  LDLD-FSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY 136
             +D  +V N L+ +Y KCG      K+FD++ E+  ++WN++IS           LE +
Sbjct: 128 YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAF 187

Query: 137 REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGS---NPFLNNALINMY 193
           R M    V P + T V V+++C++L     GL + +Q+ A G      N F+ N L+ MY
Sbjct: 188 RCMLDENVEPSSFTLVSVVTACSNLPMPE-GLMMGKQVHAYGLRKGELNSFIINTLVAMY 246

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
            + G L  ++ +      + +V+W  ++     +     A++   EM+  G+ PD     
Sbjct: 247 GKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTIS 306

Query: 254 SVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           SVL ACSH  +   G E + Y +KN   L       + +VD+     Q+     + + M 
Sbjct: 307 SVLPACSHLEMLRTGKELHAYALKNG-SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMF 365

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAF 340
               G +W A++     +++ + A L F
Sbjct: 366 DRKIG-LWNAMIAGYSQNEHDKEALLLF 392



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 108/251 (43%), Gaps = 42/251 (16%)

Query: 116 WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175
           W  ++    ++ L    +  Y +M  LG+ PD   F  +L + A L    +G ++   + 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 176 ANGFGSNPF-LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
             G+G +   + N L+N+Y +CG+      +FD +  +  VSW ++I         E+A+
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK-NKYGLQPGPEH---YTC 290
           + F  ML   + P     VSV++ACS+  + + GL    G + + YGL+ G  +      
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPE-GL--MMGKQVHAYGLRKGELNSFIINT 241

Query: 291 MVDLLGRAG-------------------------------QLNEALELIESML---VEPD 316
           +V + G+ G                               QL EALE +  M+   VEPD
Sbjct: 242 LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 301

Query: 317 GAVWGALLGAC 327
                ++L AC
Sbjct: 302 EFTISSVLPAC 312


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/519 (40%), Positives = 311/519 (59%), Gaps = 12/519 (2%)

Query: 9   THLTVCYNALISGYVLNS-LVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           +H    +N LI  +   +     A+  +  MR   V  N  T   +L  C     L LG 
Sbjct: 188 SHDAFLFNTLIRAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGG 247

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKC------GSVDYGRKLFDQVPEKGLITWNAMIS 121
             H   VKFG + D  V N L+ MY  C      G V   +K+FD+ P K  +TW+AMI 
Sbjct: 248 AVHASMVKFGFEEDPHVRNTLVHMYCCCCQDGSSGPVS-AKKVFDESPVKDSVTWSAMIG 306

Query: 122 GYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGS 181
           GYA+ G +   + L+REM+  GVCPD +T V VLS+CA LGA  +G  +E  I+      
Sbjct: 307 GYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKNIMR 366

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           +  L NALI+M+A+CG++ +A  +F  M  +T+VSWT++I G  +HG G  AV +FDEM+
Sbjct: 367 SVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMM 426

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301
           + G+ PD  AF+ VLSACSH+GL DKG  YF  M+N + + P  EHY CMVD+L RAG++
Sbjct: 427 EQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCMVDMLSRAGRV 486

Query: 302 NEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY 361
           NEALE + +M VEP+  +W +++ AC     ++L E    ++I+ EP +   YVLLSNIY
Sbjct: 487 NEALEFVRAMPVEPNQVIWRSIVTACHARGELKLGESVAKELIRREPSHESNYVLLSNIY 546

Query: 362 SEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLE 421
           ++    +   +VR MM  + ++K PG + +E+   ++ F+ GD++H Q  EIY M++++ 
Sbjct: 547 AKLLRWEKKTKVREMMDVKGMRKIPGSTMIEMNNEIYEFVAGDKSHDQYKEIYEMVEEMG 606

Query: 422 NLVQEHDGTKRSDQK----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICG 477
             ++       + Q     + E+  +    HSEKLAIAF +++T PGT I ++KNLR+C 
Sbjct: 607 REIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLSTPPGTPIRIVKNLRVCE 666

Query: 478 DCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           DCH   K +SK+ +R+ +VRD  RFHHFK+G CSC D+W
Sbjct: 667 DCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCGDFW 705


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/508 (40%), Positives = 312/508 (61%), Gaps = 4/508 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +I+G   N L  E +++  +M    ++ +S T+  +LP+  +   +  G   H  
Sbjct: 266 VSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGC 325

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ GLD +  V + L+ MY KC  V    ++F  + E+  I+WN++I+G  QNGL    
Sbjct: 326 SIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEG 385

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+ +R+M    + P + +F  ++ +CAHL    +G ++   I  NGF  N F+ ++L++M
Sbjct: 386 LKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDM 445

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CGN++ AR IFD M  + +VSWTA+I G  +HGH   A++LF++M   GI P+  AF
Sbjct: 446 YAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAF 505

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           ++VL+ACSHAGL D+  +YF  M   +G+ PG EHY  + DLLGRAG+L EA + I  M 
Sbjct: 506 MAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMP 565

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           + P G+VW  LL AC++HKNV++AE    ++++++P NTG Y+LL+NIYS AR      +
Sbjct: 566 IGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAYILLANIYSAARRWKEAAK 625

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH----D 428
            R  +R   ++K P  S++E++ +V+ FM GD +H    +I   ++ L  L+++     D
Sbjct: 626 WRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCYEKIREAMEVLMELMEKEGYVPD 685

Query: 429 GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
            ++       E+       HSE+LAI FGIINT  GT I V KNLR+C DCH   K +SK
Sbjct: 686 TSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGTTIRVTKNLRVCTDCHTATKFISK 745

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           IV R+ +VRD +RFHHFK+G CSC DYW
Sbjct: 746 IVGREIVVRDNSRFHHFKNGTCSCGDYW 773



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 131/262 (50%), Gaps = 3/262 (1%)

Query: 97  SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS 156
           SVD  RK+F+ +PEK L++WN +I+G A+NGL    L + REM    + PD+ T   VL 
Sbjct: 249 SVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLP 308

Query: 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS 216
             A     S G E+       G  +  ++ ++LI+MYA+C  +  +  +F  +  +  +S
Sbjct: 309 LIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGIS 368

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
           W +II G   +G  +  ++ F +ML + I+P   +F S++ AC+H      G +  +G  
Sbjct: 369 WNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQ-LHGYI 427

Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELA 336
            + G        + +VD+  + G +  A ++ + M +  D   W A++  C +H +  L 
Sbjct: 428 TRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLR-DMVSWTAMIMGCALHGHA-LD 485

Query: 337 ELAFGKVIKLEPMNTGYYVLLS 358
            +   + +K E +   Y   ++
Sbjct: 486 AIELFEQMKTEGIEPNYVAFMA 507



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 9/132 (6%)

Query: 103 KLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162
           +LF+ +     + W ++I  Y  +GL    L  +  M + G+ PD   F  VL +CA L 
Sbjct: 63  RLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLM 122

Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKK-------ARAIFDGMPRKT-- 213
             ++G  +   I   G   + +  NAL+NMY++   LKK       A  + D M  +T  
Sbjct: 123 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRS 182

Query: 214 VVSWTAIIGGYG 225
           V + + ++G  G
Sbjct: 183 VRTASVLVGNQG 194



 Score = 40.0 bits (92), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +Y+    L  +  +F+ +     ++W ++I  Y  HG    ++  F  ML SG+ PD   
Sbjct: 51  IYSHINLLHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNV 110

Query: 252 FVSVLSACSHAGLTDKGL-EYFYGMKNKYGL 281
           F SVL AC  A L D  L E  +G   + GL
Sbjct: 111 FPSVLKAC--AMLMDLNLGESLHGYIIRVGL 139


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/521 (41%), Positives = 319/521 (61%), Gaps = 21/521 (4%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +NA+I+GY  N    EA+ LF  M E  G+  NS TM  ++P CV  G        H   
Sbjct: 372 WNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFV 431

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           VK GLD D  V N LM MY + G +D   ++F ++ ++ L+TWN MI+GY  +      L
Sbjct: 432 VKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDAL 491

Query: 134 ELYREMKSL-----------GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN 182
            L  +M++L            + P+++T + +L SCA L A + G E+      N   ++
Sbjct: 492 LLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATD 551

Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
             + +AL++MYA+CG L+ +R +FD +P+K V++W  II  YG+HG+G+ A+ L   M+ 
Sbjct: 552 VAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMV 611

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
            G++P+   F+SV +ACSH+G+ D+GL  FY MK  YG++P  +HY C+VDLLGRAG++ 
Sbjct: 612 QGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIK 671

Query: 303 EALELIESMLVEPDGA-VWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY 361
           EA +L+  M  + + A  W +LLGA +IH N+E+ E+A   +I+LEP    +YVLL+NIY
Sbjct: 672 EAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIY 731

Query: 362 SEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLE 421
           S A   D    VR  M+E+ ++K+PG S++E    VH F+ GD +H Q+ ++   L+ L 
Sbjct: 732 SSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLW 791

Query: 422 NLVQEHDGTKRSD--QKNSEEHLNDTEV----HSEKLAIAFGIINTSPGTEIVVMKNLRI 475
             +++      +     N EE  ++ E+    HSEKLAIAFGI+NTSPGT I V KNLR+
Sbjct: 792 ERMRKEGYVPDTSCVLHNVEE--DEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRV 849

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           C DCHL  K +SKIVDR+ I+RD  RFH FK+G CSC DYW
Sbjct: 850 CNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 163/352 (46%), Gaps = 10/352 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD- 59
           VFD    S    V +N+LIS          A+  F  M ++ VE +S T++ ++  C + 
Sbjct: 155 VFDRI--SERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 212

Query: 60  --PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWN 117
             P  L +G   H   ++ G +L+  + N L+ MY K G +   + L      + L+TWN
Sbjct: 213 PMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWN 271

Query: 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
            ++S   QN      LE  REM   GV PD  T   VL +C+HL     G E+      N
Sbjct: 272 TVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKN 331

Query: 178 G-FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
           G    N F+ +AL++MY  C  +   R +FDGM  + +  W A+I GY  + H + A+ L
Sbjct: 332 GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLL 391

Query: 237 FDEMLKS-GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295
           F  M +S G+  + T    V+ AC  +G   +  E  +G   K GL         ++D+ 
Sbjct: 392 FIGMEESAGLLANSTTMAGVVPACVRSGAFSRK-EAIHGFVVKRGLDRDRFVQNTLMDMY 450

Query: 296 GRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE 347
            R G+++ A+ +   M  + D   W  ++      ++ E A L   K+  LE
Sbjct: 451 SRLGKIDIAMRIFGKM-EDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLE 501



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 152/328 (46%), Gaps = 8/328 (2%)

Query: 18  LISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFG 77
           L+   V ++L+ EAV  +  M   G++ ++     LL    D   + LG   H    KFG
Sbjct: 68  LLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFG 127

Query: 78  LDLD-FSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY 136
             +D  +V N L+ +Y KCG      K+FD++ E+  ++WN++IS           LE +
Sbjct: 128 YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAF 187

Query: 137 REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGS---NPFLNNALINMY 193
           R M    V P + T V V+++C++L     GL + +Q+ A G      N F+ N L+ MY
Sbjct: 188 RCMLDENVEPSSFTLVSVVTACSNLPMPE-GLMMGKQVHAYGLRKGELNSFIINTLVAMY 246

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
            + G L  ++ +      + +V+W  ++     +     A++   EM+  G+ PD     
Sbjct: 247 GKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTIS 306

Query: 254 SVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           SVL ACSH  +   G E + Y +KN   L       + +VD+     Q+     + + M 
Sbjct: 307 SVLPACSHLEMLRTGKELHAYALKNG-SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMF 365

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAF 340
               G +W A++     +++ + A L F
Sbjct: 366 DRKIG-LWNAMIAGYSQNEHDKEALLLF 392



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 108/251 (43%), Gaps = 42/251 (16%)

Query: 116 WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175
           W  ++    ++ L    +  Y +M  LG+ PD   F  +L + A L    +G ++   + 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 176 ANGFGSNPF-LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
             G+G +   + N L+N+Y +CG+      +FD +  +  VSW ++I         E+A+
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK-NKYGLQPGPEH---YTC 290
           + F  ML   + P     VSV++ACS+  + + GL    G + + YGL+ G  +      
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPE-GL--MMGKQVHAYGLRKGELNSFIINT 241

Query: 291 MVDLLGRAG-------------------------------QLNEALELIESML---VEPD 316
           +V + G+ G                               QL EALE +  M+   VEPD
Sbjct: 242 LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 301

Query: 317 GAVWGALLGAC 327
                ++L AC
Sbjct: 302 EFTISSVLPAC 312


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/520 (41%), Positives = 316/520 (60%), Gaps = 16/520 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + ++A+I+GY       EA+ +F +M+  G+E N VT+  LL  C   G L  G   H  
Sbjct: 336 ITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAY 395

Query: 73  CVKFGLDL-------DFSVGNCLMTMYVKCGSVDYGRKLFDQV--PEKGLITWNAMISGY 123
            +K  L+L       D  V N L+ MY KC S    R +FD +   +K ++TW  MI GY
Sbjct: 396 VIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGY 455

Query: 124 AQNGLATHVLELYREM--KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGS 181
           AQ+G A   L+L+ ++  +   + P+A T    L +CA LG   +G ++      N   S
Sbjct: 456 AQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENES 515

Query: 182 NP-FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
              ++ N LI+MY++ G++  ARA+FD M  + VVSWT+++ GYG+HG GE A+ LFD+M
Sbjct: 516 EVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQM 575

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            K G   DG  F+ VL ACSH+G+ D+G+ YF+ M   +G+ PG EHY CMVDLLGRAG+
Sbjct: 576 QKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGR 635

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           LNEA+ELI++M +EP   VW ALL A +IH N+EL E A  K+ +L   N G Y LLSN+
Sbjct: 636 LNEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNL 695

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+ AR    + R+R +M+   ++K PG S+++ K     F VGDR+H ++ +IY +L  L
Sbjct: 696 YANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDL 755

Query: 421 ENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
              +++     ++       + EE  +    HSEKLA+A+GI+ T+PG  I + KNLRIC
Sbjct: 756 IKRIKDMGYVPQTSFALHDVDDEEKGDLLFEHSEKLAVAYGILTTAPGQPIRIHKNLRIC 815

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           GDCH  +  +S I+D + ++RD++RFHHFK G CSC+ YW
Sbjct: 816 GDCHSALTYISMIIDHEIVLRDSSRFHHFKKGSCSCRSYW 855



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 189/400 (47%), Gaps = 59/400 (14%)

Query: 1   VFDESI-KSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQ---GVEINSVTMLCLLPI 56
           +FDE + +     V +N++++ YV       A+ +  +M       +  +++T++ +LP 
Sbjct: 184 MFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPA 243

Query: 57  CVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
           C     L  G   H   V+ GL  D  VGN L++MY KC  ++   K+F+ + +K +++W
Sbjct: 244 CASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSW 303

Query: 117 NAMIS-----------------------------------GYAQNGLATHVLELYREMKS 141
           NAM++                                   GYAQ G     L+++R+M+ 
Sbjct: 304 NAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQL 363

Query: 142 LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN-------PFLNNALINMYA 194
            G+ P+ VT   +LS CA +GA   G +    +  N    N         + N LI+MYA
Sbjct: 364 YGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYA 423

Query: 195 RCGNLKKARAIFDGM--PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML--KSGIRPDGT 250
           +C + + AR+IFD +    K VV+WT +IGGY  HG    A++LF ++   K+ ++P+  
Sbjct: 424 KCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAF 483

Query: 251 AFVSVLSACSHAGLTDKGLE-YFYGMKNKYG---LQPGPEHYTCMVDLLGRAGQLNEALE 306
                L AC+  G    G + + Y ++N+     L  G     C++D+  ++G ++ A  
Sbjct: 484 TLSCALMACARLGELRLGRQLHAYALRNENESEVLYVG----NCLIDMYSKSGDIDAARA 539

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
           + ++M +  +   W +L+    +H   E A   F ++ KL
Sbjct: 540 VFDNMKLR-NVVSWTSLMTGYGMHGRGEEALHLFDQMQKL 578



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 150/282 (53%), Gaps = 8/282 (2%)

Query: 9   THLTV-CYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           +H TV  +NALI   V   L+ + +  + +M+  G   +  T   +L  C +   L  G 
Sbjct: 88  SHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGA 147

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK---GLITWNAMISGYA 124
             H I    GL  +  + N ++ MY +CG++D   ++FD+V E+    +++WN++++ Y 
Sbjct: 148 SVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYV 207

Query: 125 QNGLATHVLELYREMK---SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGS 181
           Q G +   L +   M    SL + PDA+T V +L +CA + A   G +V      NG   
Sbjct: 208 QGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVD 267

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           + F+ NAL++MYA+C  + +A  +F+G+ +K VVSW A++ GY   G  + A+ LF  M 
Sbjct: 268 DVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQ 327

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP 283
           +  I+ D   + +V++  +  G   + L+ F  M+  YGL+P
Sbjct: 328 EEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQ-LYGLEP 368


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/552 (40%), Positives = 320/552 (57%), Gaps = 41/552 (7%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF++    T  T   N++I GY   +L  +A+  +  M  QG++ +  T   L   C   
Sbjct: 34  VFNQIPNPTTFTC--NSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSC--- 88

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  G   HC   K G   D  + N LM MY  CG +   RK+FD++  K +++W  MI
Sbjct: 89  GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMI 148

Query: 121 SGYAQNGLATHVLELYR--------------------------------EMKSLGVCPDA 148
             YAQ  L    ++L+R                                EM+  GV  D 
Sbjct: 149 GAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDK 208

Query: 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208
           VT   +L +C HLGA  +G  +   I+      +  L  AL++MYA+CG+++ A  +F  
Sbjct: 209 VTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQE 268

Query: 209 MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
           MP K V++WTA+I G  + G G  A++LF EM  S ++PD   FV VL+ACSHAGL ++G
Sbjct: 269 MPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEG 328

Query: 269 LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACK 328
           + YF  M NKYG+QP  EHY CMVD+LGRAG++ EA +LI++M + PD  V   LL AC+
Sbjct: 329 IAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACR 388

Query: 329 IHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGY 388
           IH N+ +AE A  ++I+L+P N G YVLLSNIYS  +N +   ++R +M ER +KK PG 
Sbjct: 389 IHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGC 448

Query: 389 SYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH----DGTKRSDQKNSEEHLND 444
           S +E+ G VH F+ GD +H Q+ EIY  LD +   ++      D ++     + +E  N+
Sbjct: 449 SAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENE 508

Query: 445 TEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHH 504
             +HSEKLAIAFG+++T+PGT I V+KNLR+C DCH  +K +S++ +R+ IVRD  RFHH
Sbjct: 509 LSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHH 568

Query: 505 FKSGFCSCKDYW 516
           F  G CSC+D+W
Sbjct: 569 FTKGSCSCRDFW 580



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 120/261 (45%), Gaps = 37/261 (14%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
           GS+ Y R +F+Q+P     T N++I GY    L    +  Y+ M   G+ PD  TF  + 
Sbjct: 26  GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLF 85

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
            SC   G    G ++       GF S+ ++ N L+NMY+ CG L  AR +FD M  K+VV
Sbjct: 86  KSC---GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVV 142

Query: 216 SWTAIIGGYG---------------------------IHGH-----GEVAVQLFDEMLKS 243
           SW  +IG Y                            I+GH      E A+ LF+EM  S
Sbjct: 143 SWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLS 202

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
           G++ D     S+L AC+H G  + G ++ +    K  ++      T +VD+  + G +  
Sbjct: 203 GVKGDKVTMASLLIACTHLGALELG-KWLHVYIEKEKIEVDVALGTALVDMYAKCGSIES 261

Query: 304 ALELIESMLVEPDGAVWGALL 324
           A+ + + M  E D   W AL+
Sbjct: 262 AMRVFQEM-PEKDVMTWTALI 281


>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
          Length = 978

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/518 (39%), Positives = 319/518 (61%), Gaps = 15/518 (2%)

Query: 12  TVCYNALISGYVLNS--LVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMC 68
           T  +N++I G+  +   L  +A+  +  M        ++ T   LL  C +      G C
Sbjct: 463 TPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEE--GKC 520

Query: 69  --CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQN 126
              H   ++FG D D  +   L+  Y   G ++   K+F+++P + L++WN+MIS Y Q 
Sbjct: 521 REVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQT 580

Query: 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
           GL    L++Y +M+   V  D  T V +LSSCAH+GA  +G+++ +         N F+ 
Sbjct: 581 GLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVG 640

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           NALI+MYA+CG+L  A +IF+ MP++ V +W ++I GYG+HG G+ A+  F  ML +G+R
Sbjct: 641 NALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVR 700

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           P+   F+ +L  CSH GL  +G++YF+ M +++ L+PG +HY CMVDL GRAG+L EALE
Sbjct: 701 PNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALE 760

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366
           +I S   + D  +W  LLG+CKIH+NVE+ E+A   +++L  +  G  VLLS IY+EA++
Sbjct: 761 VIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDCVLLSGIYAEAKD 820

Query: 367 LDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK------L 420
           L G+ R+R +++ R +K  PG+S++E+  +VH F+V D++H  + EIYR L++      L
Sbjct: 821 LQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSREIYRKLEEVIHRASL 880

Query: 421 ENLVQEHDGTKRSDQKNSEEHL--NDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGD 478
                E      + + N++E+     T  HSEKLAIA+G+  T  GT ++++KNLR+C D
Sbjct: 881 VGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPEGTSLLIVKNLRVCRD 940

Query: 479 CHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           CH F K VSK  DR+ IVRD  RFHHF+ G CSCK++W
Sbjct: 941 CHNFTKFVSKAFDREIIVRDRVRFHHFRGGHCSCKEFW 978



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 142/314 (45%), Gaps = 19/314 (6%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQ--NGLATHVLELYREMKSLG-VCPDAVTFV 152
           GS+ Y + +F ++       WN+MI G++Q  + L    +  Y  M S     PD  TF 
Sbjct: 446 GSLAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFS 505

Query: 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK 212
            +L +C          EV   I   G+  +  L   LI  YA  G ++ A  +F+ MP +
Sbjct: 506 FLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPAR 565

Query: 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF 272
            +VSW ++I  Y   G  E A++++D+M  S +  DG   VS+LS+C+H G    G++  
Sbjct: 566 DLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQ-- 623

Query: 273 YGMKNKYGLQPGPEHY---TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
             M    G +   E+      ++D+  + G L  AL +  SM  + D   W +++    +
Sbjct: 624 --MHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSM-PKRDVFTWNSMIVGYGV 680

Query: 330 HKNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPG 387
           H   + A   FG ++   + P +  +  LL     +    +G+    MM  E  LK  PG
Sbjct: 681 HGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLK--PG 738

Query: 388 YSY----VELKGRV 397
             +    V+L GR 
Sbjct: 739 IKHYGCMVDLFGRA 752


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/524 (42%), Positives = 311/524 (59%), Gaps = 14/524 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF+E  K  H  + ++ +IS Y  ++   EAV LFG+MR   V  N  T   +L  C   
Sbjct: 199 VFEEMPK--HDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASI 256

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L LG   HC  +K GLD +  V N LM +Y KCG +D   KLF ++P +  +TWN MI
Sbjct: 257 ENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMI 316

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GY Q+G     L LY+ M    V    VT+  VL +CA L A  +G ++        + 
Sbjct: 317 VGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYD 376

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            +  + NALI+MYA+CG++K AR +FD +  +  +SW A+I GY +HG    A++ F  M
Sbjct: 377 KDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMM 436

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            ++   P+   FVS+LSACS+AGL D G  YF  M   YG++P  EHYTCMV LLGR+G 
Sbjct: 437 QETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGH 496

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L++A++LIE + +EP+  VW ALLGAC IH +V+L  ++  ++++++P +   +VLLSNI
Sbjct: 497 LDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNI 556

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+  R  + +  VR  M+ + +KK+PG S++E +G VH F VGD +H     I  ML+ L
Sbjct: 557 YARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGDTSHPDMKMISGMLEWL 616

Query: 421 ENLVQEHDG--------TKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKN 472
            N+  E  G         +  +    + HL    VHSE+LA+AFG+I T     I ++KN
Sbjct: 617 -NMKTEKAGYVPDLNAVLRDVEDDEKKRHL---WVHSERLALAFGLIRTPSRGHIRILKN 672

Query: 473 LRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           LRIC DCH  IKL+SKIV R  I+RD  RFHHF+ G CSC DYW
Sbjct: 673 LRICTDCHSAIKLISKIVQRDIIIRDMNRFHHFQDGICSCGDYW 716



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 169/348 (48%), Gaps = 4/348 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  +++ Y  N    +++ LF +MR  G   N  T   +L  C+      +G   H  
Sbjct: 108 VSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGC 167

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K   ++D  VG  L+ +Y K G  +   ++F+++P+  +I W+ MIS YAQ+  +   
Sbjct: 168 VLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREA 227

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           +EL+ +M+   V P+  TF  VL SCA +    +G +V   +   G   N F++NAL+++
Sbjct: 228 VELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDV 287

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG L  +  +F  +P +  V+W  +I GY   G G+ A+ L+  ML+  ++     +
Sbjct: 288 YAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTY 347

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            SVL AC+     + G +  + +  K            ++D+  + G +  A  L+  ML
Sbjct: 348 SSVLRACASLAAMELGTQ-IHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNA-RLVFDML 405

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE--PMNTGYYVLLS 358
            E D   W A++    +H  V  A  AF  + + E  P    +  +LS
Sbjct: 406 SERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILS 453



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 165/349 (47%), Gaps = 17/349 (4%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           TV +  LI GYV +  + E V LF ++  +G E+N      +L + V      L    H 
Sbjct: 6   TVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYSLHA 65

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              K G + +  VG  L+  Y  CGSV+  R+ FD +  K +++W  M++ YA+N     
Sbjct: 66  CIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQD 125

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L+L+ EM+ +G  P+  TF GVL +C  L A SVG  V   +    +  + ++   L++
Sbjct: 126 SLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLD 185

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +Y + G+      +F+ MP+  V+ W+ +I  Y        AV+LF +M ++ + P+   
Sbjct: 186 LYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFT 245

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F SVL +C+       G +    +  K GL         ++D+  + G+L+ +++L    
Sbjct: 246 FASVLQSCASIENLQLGKQVHCHVL-KVGLDGNVFVSNALMDVYAKCGRLDNSMKLFME- 303

Query: 312 LVEPDGAVWGALL----------GACKIHKN-----VELAELAFGKVIK 345
           L   +   W  ++           A  ++KN     V+ +E+ +  V++
Sbjct: 304 LPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLR 352



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 136/315 (43%), Gaps = 50/315 (15%)

Query: 108 VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVG 167
           +P++  +++  +I GY Q+     V++L+  +   G   +   F  +L     +    + 
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 168 LEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH 227
             +   I   G  SN F+  ALI+ YA CG++  AR  FD +  K +VSWT ++  Y  +
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG------- 280
              + ++QLF EM   G  P+   F  VL AC        GLE F   K+ +G       
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACI-------GLEAFSVGKSVHGCVLKTCY 173

Query: 281 --------------------------LQPGPEH----YTCMVDLLGRAGQLNEALELIES 310
                                      +  P+H    ++ M+    ++ Q  EA+EL   
Sbjct: 174 EMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQ 233

Query: 311 M---LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV--LLSNIYSEAR 365
           M    V P+   + ++L +C   +N++L +     V+K+  ++   +V   L ++Y++  
Sbjct: 234 MRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKV-GLDGNVFVSNALMDVYAKCG 292

Query: 366 NLDGIMRVRMMMRER 380
            LD  M++ M +  R
Sbjct: 293 RLDNSMKLFMELPNR 307


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/508 (42%), Positives = 306/508 (60%), Gaps = 4/508 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+I+GY+  + + E   LF +M E+ V  N +TML L+  C   G + LG   H  
Sbjct: 198 VSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAY 257

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ G  +  ++   L+ MY KCG +   R +FD +  K ++TW AMIS YAQ     + 
Sbjct: 258 ILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYA 317

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            +L+ +M+  GV P+ +T V +LS CA  GA  +G      I   G   +  L  ALI+M
Sbjct: 318 FQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDM 377

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG++  A+ +F     + + +W  ++ GYG+HG+GE A++LF EM   G++P+   F
Sbjct: 378 YAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITF 437

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +  L ACSHAGL  +G   F  M + +GL P  EHY CMVDLLGRAG L+EA ++IESM 
Sbjct: 438 IGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMP 497

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           V P+ A+WGA+L ACKIHKN  + ELA  +++ LEP N GY VL+SNIY+ A   + +  
Sbjct: 498 VTPNIAIWGAMLAACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAG 557

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----HD 428
           +R  +++  +KK+PG S +E+ G VH F +GD  H    +I  ML ++   ++E     D
Sbjct: 558 MRKAVKDTGIKKEPGMSSIEVNGLVHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGYLPD 617

Query: 429 GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
            +      + EE       HSEKLA+AFG+I+T+PGT I V+KNLRIC DCH   KL+SK
Sbjct: 618 TSVVLHNIDEEEKETALNYHSEKLAMAFGLISTAPGTPIRVVKNLRICDDCHTVTKLLSK 677

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           I  R  IVRD  RFHHF+ G CSC  YW
Sbjct: 678 IYKRVIIVRDRNRFHHFREGSCSCGGYW 705



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 160/322 (49%), Gaps = 24/322 (7%)

Query: 31  AVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90
           A++ +  MR+  +E++S  +  +L  C       +G   H   VK GL  D  V N LM 
Sbjct: 93  ALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQ 152

Query: 91  MYVKCGSVDYGRKLFDQVPEK----------------------GLITWNAMISGYAQNGL 128
           MY +CGS+   R LFD++ E+                       +++W AMI+GY +   
Sbjct: 153 MYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCND 212

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
                 L+  M    V P+ +T + ++ SC  +GA  +G  +   I  NGFG +  L  A
Sbjct: 213 LEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATA 272

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           L++MY +CG ++ ARAIFD M  K V++WTA+I  Y      + A QLF +M  +G+RP+
Sbjct: 273 LVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPN 332

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
               VS+LS C+  G  D G ++F+   +K G++      T ++D+  + G ++ A  L 
Sbjct: 333 ELTMVSLLSLCAVNGALDMG-KWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLF 391

Query: 309 ESMLVEPDGAVWGALLGACKIH 330
            S  ++ D   W  ++    +H
Sbjct: 392 -SEAIDRDICTWNVMMAGYGMH 412



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 26/219 (11%)

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
           + L  Y  M+ L +  D+     VL +C+ +    +G E+      NG  S+ F+ NAL+
Sbjct: 92  YALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALM 151

Query: 191 NMYARCGNLKKARAIFD----------------------GMPRKTVVSWTAIIGGYGIHG 228
            MY+ CG+L  AR +FD                      G  ++++VSWTA+I GY    
Sbjct: 152 QMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCN 211

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEH 287
             E   +LF  M++  + P+    +S++ +C   G    G   + Y ++N +G+      
Sbjct: 212 DLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALA- 270

Query: 288 YTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
            T +VD+ G+ G++  A  + +SM    D   W A++ A
Sbjct: 271 -TALVDMYGKCGEIRSARAIFDSM-KNKDVMTWTAMISA 307


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/522 (42%), Positives = 312/522 (59%), Gaps = 20/522 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++A ISGY    L  EA+ +  +M   G++ N VT++ +L  C   G L  G   HC 
Sbjct: 331 VTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCY 390

Query: 73  CVKFGLDL-------DFSVGNCLMTMYVKCGSVDYGRKLFDQVP--EKGLITWNAMISGY 123
            +K+ +DL       +  V N L+ MY KC  VD  R +FD +   E+ ++TW  MI GY
Sbjct: 391 AIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGY 450

Query: 124 AQNGLATHVLELYREM--KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGS 181
           +Q+G A   LEL  EM  +     P+A T    L +CA L A  +G ++      N   +
Sbjct: 451 SQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNA 510

Query: 182 NP-FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            P F++N LI+MYA+CG++  AR +FD M  K  V+WT+++ GYG+HG+GE A+ +FDEM
Sbjct: 511 VPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEM 570

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            + G + DG   + VL ACSH+G+ D+G+EYF  MK  +G+ PGPEHY C+VDLLGRAG+
Sbjct: 571 RRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGR 630

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           LN AL LIE M +EP   VW A L  C+IH  VEL E A  K+ +L   + G Y LLSN+
Sbjct: 631 LNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNL 690

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+ A     + R+R +MR + +KK PG S+VE       F VGD+ H    EIY++L  L
Sbjct: 691 YANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVL--L 748

Query: 421 ENLVQEHDGTKRSDQKNSEEHLNDTEV------HSEKLAIAFGIINTSPGTEIVVMKNLR 474
           +++ +  D     +   +   ++D E       HSEKLA+A+GI+ T  G  I + KNLR
Sbjct: 749 DHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLR 808

Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +CGDCH     +S+I+D   I+RD++RFHHFK+G CSCK YW
Sbjct: 809 VCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 112/378 (29%), Positives = 177/378 (46%), Gaps = 52/378 (13%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVD 59
           VFDE   S    V +N++I  Y        A+ +F +M  E G   +++T++ +LP C  
Sbjct: 184 VFDE--MSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCAS 241

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
            G   LG   HC  V   +  +  VGNCL+ MY KCG +D    +F  +  K +++WNAM
Sbjct: 242 LGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAM 301

Query: 120 -----------------------------------ISGYAQNGLATHVLELYREMKSLGV 144
                                              ISGYAQ GL    L + R+M S G+
Sbjct: 302 VAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGI 361

Query: 145 CPDAVTFVGVLSSCAHLGA-------HSVGLEVEQQIQANGFGSNPFLNNALINMYARCG 197
            P+ VT + VLS CA +GA       H   ++    ++ NG G    + N LI+MYA+C 
Sbjct: 362 KPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCK 421

Query: 198 NLKKARAIFDGMPRKT--VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG--IRPDGTAFV 253
            +  ARA+FD +  K   VV+WT +IGGY  HG    A++L  EM +     RP+     
Sbjct: 422 KVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTIS 481

Query: 254 SVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
             L AC+       G + + Y ++N+    P      C++D+  + G +++A  + ++M+
Sbjct: 482 CALVACASLAALRIGKQIHAYALRNQQNAVPLFVS-NCLIDMYAKCGSISDARLVFDNMM 540

Query: 313 VEPDGAVWGALLGACKIH 330
            + +   W +L+    +H
Sbjct: 541 AKNE-VTWTSLMTGYGMH 557



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 175/381 (45%), Gaps = 47/381 (12%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N+LI  Y  N   ++ + LFG M       ++ T   +   C +   +  G   H + +
Sbjct: 95  WNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSL 154

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             G   +  VGN L+ MY +C S+   RK+FD++    +++WN++I  YA+ G     LE
Sbjct: 155 VTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALE 214

Query: 135 LYREMKS-LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
           ++  M +  G  PD +T V VL  CA LG HS+G ++      +    N F+ N L++MY
Sbjct: 215 MFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMY 274

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD--------------- 238
           A+CG + +A  +F  M  K VVSW A++ GY   G  E AV+LF+               
Sbjct: 275 AKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWS 334

Query: 239 --------------------EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKN 277
                               +ML SGI+P+    +SVLS C+  G    G E + Y +K 
Sbjct: 335 AAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKY 394

Query: 278 KYGLQP---GPEHYTC--MVDLLGRAGQLNEALELIESMLV-EPDGAVWGALLGACKIH- 330
              L+    G E+     ++D+  +  +++ A  + +S+   E D   W  ++G    H 
Sbjct: 395 PIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHG 454

Query: 331 ---KNVELAELAFGKVIKLEP 348
              K +EL    F +  +  P
Sbjct: 455 DANKALELLSEMFEEDCQTRP 475



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 123/255 (48%), Gaps = 6/255 (2%)

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP--EKGLITWNAMISGYAQNGLATH 131
           + FG+ L  ++ + L++ Y+  G + +   L  + P  + G+  WN++I  Y  NG A  
Sbjct: 52  LSFGI-LTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANK 110

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L L+  M SL   PD  TF  V  +C  + +   G          GF SN F+ NAL+ 
Sbjct: 111 CLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVA 170

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS-GIRPDGT 250
           MY+RC +L  AR +FD M    VVSW +II  Y   G  +VA+++F  M    G RPD  
Sbjct: 171 MYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNI 230

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
             V+VL  C+  G    G +          +Q       C+VD+  + G ++EA  +  +
Sbjct: 231 TLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQ-NMFVGNCLVDMYAKCGMMDEANTVFSN 289

Query: 311 MLVEPDGAVWGALLG 325
           M V+ D   W A++ 
Sbjct: 290 MSVK-DVVSWNAMVA 303


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/510 (42%), Positives = 303/510 (59%), Gaps = 7/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +  GY        A +LF ++   G+  +  T   LL  C     L  G   HC+
Sbjct: 87  VLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQLHCL 146

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K GL  +  V   L+ MY  C  +D  R++FD++ E  ++T+NAMI+GYA+       
Sbjct: 147 AIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEA 206

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+RE+++  + P  VT + VLSSCA LGA  +G  + + ++ NGF     ++ ALI+M
Sbjct: 207 LSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDM 266

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG+L  A  +F+ M  +   +W+A+I  Y IHGHG  AV LF EM K+G  PD   F
Sbjct: 267 YAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITF 326

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + +L ACSH GL ++G EYFYGM++KYG+ PG +HY CMVDLLGRAG+L EA E I  + 
Sbjct: 327 LGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLP 386

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           + P   +W  LL AC  H NVEL +    ++ +L+  + G Y++LSN+ + A   + +  
Sbjct: 387 IRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGGDYIILSNLCARAGRWEDVNY 446

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD------KLENLVQE 426
           VR +M ER + K PG S VE+   VH F  GD  H  + ++++ LD      KL   V  
Sbjct: 447 VRKLMNERGVVKIPGCSSVEVNNVVHEFFSGDGVHSVSTKLHQALDELVKELKLVGYVPN 506

Query: 427 HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
                 +D ++ E+ +     HSEKLAI FG++NT PGT I V+KNLR+CGDCH   KL+
Sbjct: 507 TSLVFHADMEDEEKEVT-LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLI 565

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           S I DRQ I+RD  RFHHFK G CSC+DYW
Sbjct: 566 SLIFDRQIILRDVQRFHHFKDGKCSCEDYW 595



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 132/288 (45%), Gaps = 8/288 (2%)

Query: 46  NSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLM---TMYVKCGSVDYGR 102
           N+   L LLP C     L          +K  L  D SV    +   ++     S+ +  
Sbjct: 19  NTTHPLSLLPKCTSLREL---KQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAH 75

Query: 103 KLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162
            LFDQ+P+  ++ +N M  GYA+         L+ ++   G+ PD  TF  +L +CA   
Sbjct: 76  HLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCK 135

Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIG 222
           A   G ++       G   N ++   LINMY  C  +  AR +FD +    VV++ A+I 
Sbjct: 136 ALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMIT 195

Query: 223 GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQ 282
           GY        A+ LF E+    ++P     +SVLS+C+  G  D G ++ +    K G  
Sbjct: 196 GYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLG-KWMHEYVKKNGFN 254

Query: 283 PGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
              +  T ++D+  + G L++A+ + E+M V  D   W A++ A  IH
Sbjct: 255 RFVKVDTALIDMYAKCGSLDDAVCVFENMAVR-DTQAWSAMIMAYAIH 301


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/512 (40%), Positives = 325/512 (63%), Gaps = 11/512 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++I+ Y  N     A   F KM+  G + + +T++ L  I             H  
Sbjct: 383 VSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGF 442

Query: 73  CVKFG-LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
            ++ G L  D  +GN ++ MY K G +D   K+F+ +P K +I+WN +I+GYAQNGLA+ 
Sbjct: 443 IMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASE 502

Query: 132 VLELYREMKSLG-VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
            +E+Y+ M+    + P+  T+V +L + AH+GA   G+++  ++       + F+   LI
Sbjct: 503 AIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLI 562

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           ++Y +CG L  A ++F  +P+++ V+W AII  +GIHGH E  ++LF EML  G++PD  
Sbjct: 563 DVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHV 622

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            FVS+LSACSH+G  ++G ++ + +  +YG++P  +HY CMVDLLGRAG L  A + I+ 
Sbjct: 623 TFVSLLSACSHSGFVEEG-KWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKD 681

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M ++PD ++WGALLGAC+IH N+EL + A  ++ +++  N GYYVLLSNIY+     +G+
Sbjct: 682 MPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGV 741

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD----KLENL--V 424
            +VR + RER LKK PG+S +E+  +V +F  G+++H +  EIY  L     K+++L  +
Sbjct: 742 DKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYI 801

Query: 425 QEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
            ++    +  +++ +EH+  +  HSE+LAIAFGII+T P + I + KNLR+CGDCH   K
Sbjct: 802 PDYSFVLQDVEEDEKEHILTS--HSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATK 859

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +S+I  R+ +VRD+ RFHHFK G CSC DYW
Sbjct: 860 FISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 146/312 (46%), Gaps = 5/312 (1%)

Query: 14  CYNALISGYVLNSLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
            +N++IS YV N    EA+  F ++     +  +  T   +L  C   G L  G   HC 
Sbjct: 184 AWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRKIHCW 240

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K G   +  V   L+ MY + G     R LFD +P + + +WNAMISG  QNG A   
Sbjct: 241 AFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQA 300

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L++  EM+  G+  + VT V +L  C  LG  S  + +   +  +G   + F++NALINM
Sbjct: 301 LDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINM 360

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+ GNL+ AR  F  M    VVSW +II  Y  +     A   F +M  +G +PD    
Sbjct: 361 YAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTL 420

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           VS+ S  + +            +  +  L         +VD+  + G L+ A ++ E + 
Sbjct: 421 VSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIP 480

Query: 313 VEPDGAVWGALL 324
           V+ D   W  L+
Sbjct: 481 VK-DVISWNTLI 491



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 168/358 (46%), Gaps = 18/358 (5%)

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
           C H + V  G      +   L+ +Y   G V   R  FDQ+P+K +  WN+MIS Y  NG
Sbjct: 137 CLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNG 196

Query: 128 LATHVLELYREMKSLG-VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
                +  + ++  +  + PD  TF  VL +C   G    G ++       GF  N F+ 
Sbjct: 197 HFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQWNVFVA 253

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
            +LI+MY+R G    AR++FD MP + + SW A+I G   +G+   A+ + DEM   GI+
Sbjct: 254 ASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIK 313

Query: 247 PDGTAFVSVLSACSHAG-LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
            +    VS+L  C   G ++   L + Y +  K+GL+        ++++  + G L +A 
Sbjct: 314 MNFVTVVSILPVCPQLGDISTAMLIHLYVI--KHGLEFDLFVSNALINMYAKFGNLEDAR 371

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL--LSNIYSE 363
           +  + M +  D   W +++ A + + +   A   F K ++L         L  L++I ++
Sbjct: 372 KAFQQMFIT-DVVSWNSIIAAYEQNDDPVTAHGFFVK-MQLNGFQPDLLTLVSLASIVAQ 429

Query: 364 ARNLDGIMRVR-MMMRERRLKKDP--GYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD 418
           +R+      V   +MR   L +D   G + V++  ++ L      + H+  EI  + D
Sbjct: 430 SRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLL----DSAHKVFEIIPVKD 483



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 55/110 (50%), Gaps = 1/110 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V +NA+IS + ++    + + LFG+M ++GV+ + VT + LL  C   G++  G  C  
Sbjct: 586 SVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFR 645

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP-EKGLITWNAMI 120
           +  ++G+        C++ +  + G ++        +P +     W A++
Sbjct: 646 LMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALL 695


>gi|326499323|dbj|BAK06152.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/508 (42%), Positives = 307/508 (60%), Gaps = 6/508 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +++L      + L   A++ +  +    +  +S T   +   C D   L  G   H   +
Sbjct: 73  FSSLTRTAAHHGLPVAAIAFYRGLLSAALPFSSFTFTAVAKACADLSALRTGAAIHAHSI 132

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             G   D  V   L+ +Y KCG +   RKLFD + ++ ++ WNAMISGY QNGLA   + 
Sbjct: 133 LLGFGSDRFVLTALVVLYSKCGQLGVARKLFDAIRDRSVVAWNAMISGYEQNGLAERGIG 192

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           +Y+EM++    PD++TFV  LS+CA  GA  +G EVE+++ +     + FL +AL+NMYA
Sbjct: 193 VYKEMQAAKAVPDSMTFVATLSACAQAGALDLGREVERRVVSERMDISVFLGSALVNMYA 252

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           RCG + KAR  FD +  + VV+WT++I GYG+HGHG  A++LF  M   G  P+   FV+
Sbjct: 253 RCGVVDKARRWFDALQERNVVTWTSMIAGYGMHGHGREAIKLFHLMRCEGPPPNHVTFVA 312

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI-ESMLV 313
           VLSAC+HAGL  +G + F  MK  YGL P  EHY  MVD+ GRAG L+EA++ I + M  
Sbjct: 313 VLSACAHAGLVMEGRDAFACMKRVYGLVPRVEHYCSMVDMFGRAGLLDEAMQFISDYMPG 372

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
           EP   VW A+LGACK+HKN  L      ++I LEP N  Y+VLLSNIY+ +  +  + +V
Sbjct: 373 EPGPEVWTAVLGACKMHKNFNLGVEVAERLIALEPENPSYHVLLSNIYALSGKMHHVEKV 432

Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH----DG 429
           R  M +RRLKK  G+S +EL G  HLF +G+++H QT EIY  L++L + +       + 
Sbjct: 433 RNTMIKRRLKKQIGFSLIELGGTSHLFRMGEKSHPQTTEIYHYLEELIHRITAAGYMPET 492

Query: 430 TKRSDQKNSEEHLNDTEVHSEKLAIAFGI-INTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
                +   EE       HSEKLA+A+G+ ++    T I V+KNLRICGDCHL IK +S 
Sbjct: 493 ESVLHELEEEEREGALRYHSEKLAVAYGLMMSVGSTTPIRVIKNLRICGDCHLAIKFMSA 552

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           + +R+ +VRD  RFHHFK G CSC +YW
Sbjct: 553 VENREIVVRDKHRFHHFKDGKCSCLEYW 580



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 134/249 (53%), Gaps = 7/249 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+ISGY  N L    + ++ +M+      +S+T +  L  C   G L LG      
Sbjct: 172 VAWNAMISGYEQNGLAERGIGVYKEMQAAKAVPDSMTFVATLSACAQAGALDLGREVERR 231

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            V   +D+   +G+ L+ MY +CG VD  R+ FD + E+ ++TW +MI+GY  +G     
Sbjct: 232 VVSERMDISVFLGSALVNMYARCGVVDKARRWFDALQERNVVTWTSMIAGYGMHGHGREA 291

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           ++L+  M+  G  P+ VTFV VLS+CAH G    G +    ++   +G  P + +  +++
Sbjct: 292 IKLFHLMRCEGPPPNHVTFVAVLSACAHAGLVMEGRDAFACMK-RVYGLVPRVEHYCSMV 350

Query: 191 NMYARCGNLKKA-RAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           +M+ R G L +A + I D MP +     WTA++G   +H +  + V++ + ++   + P+
Sbjct: 351 DMFGRAGLLDEAMQFISDYMPGEPGPEVWTAVLGACKMHKNFNLGVEVAERLI--ALEPE 408

Query: 249 GTAFVSVLS 257
             ++  +LS
Sbjct: 409 NPSYHVLLS 417



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 84/162 (51%)

Query: 109 PEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGL 168
           P      ++++    A +GL    +  YR + S  +   + TF  V  +CA L A   G 
Sbjct: 66  PAPDSFLFSSLTRTAAHHGLPVAAIAFYRGLLSAALPFSSFTFTAVAKACADLSALRTGA 125

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
            +       GFGS+ F+  AL+ +Y++CG L  AR +FD +  ++VV+W A+I GY  +G
Sbjct: 126 AIHAHSILLGFGSDRFVLTALVVLYSKCGQLGVARKLFDAIRDRSVVAWNAMISGYEQNG 185

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270
             E  + ++ EM  +   PD   FV+ LSAC+ AG  D G E
Sbjct: 186 LAERGIGVYKEMQAAKAVPDSMTFVATLSACAQAGALDLGRE 227


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/521 (41%), Positives = 319/521 (61%), Gaps = 21/521 (4%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +NA+I+GY  N    EA+ LF  M E  G+  NS TM  ++P CV  G        H   
Sbjct: 285 WNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFV 344

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           VK GLD D  V N LM MY + G +D   ++F ++ ++ L+TWN MI+GY  +      L
Sbjct: 345 VKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDAL 404

Query: 134 ELYREMKSL-----------GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN 182
            L  +M++L            + P+++T + +L SCA L A + G E+      N   ++
Sbjct: 405 LLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATD 464

Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
             + +AL++MYA+CG L+ +R +FD +P+K V++W  II  YG+HG+G+ A+ L   M+ 
Sbjct: 465 VAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMV 524

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
            G++P+   F+SV +ACSH+G+ D+GL  FY MK  YG++P  +HY C+VDLLGRAG++ 
Sbjct: 525 QGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIK 584

Query: 303 EALELIESMLVEPDGA-VWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY 361
           EA +L+  M  + + A  W +LLGA +IH N+E+ E+A   +I+LEP    +YVLL+NIY
Sbjct: 585 EAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIY 644

Query: 362 SEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLE 421
           S A   D    VR  M+E+ ++K+PG S++E    VH F+ GD +H Q+ ++   L+ L 
Sbjct: 645 SSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLW 704

Query: 422 NLVQEHDGTKRSD--QKNSEEHLNDTEV----HSEKLAIAFGIINTSPGTEIVVMKNLRI 475
             +++      +     N EE  ++ E+    HSEKLAIAFGI+NTSPGT I V KNLR+
Sbjct: 705 ERMRKEGYVPDTSCVLHNVEE--DEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRV 762

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           C DCHL  K +SKIVDR+ I+RD  RFH FK+G CSC DYW
Sbjct: 763 CNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 803



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 163/352 (46%), Gaps = 10/352 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD- 59
           VFD    S    V +N+LIS          A+  F  M ++ VE +S T++ ++  C + 
Sbjct: 68  VFDRI--SERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 125

Query: 60  --PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWN 117
             P  L +G   H   ++ G +L+  + N L+ MY K G +   + L      + L+TWN
Sbjct: 126 PMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWN 184

Query: 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
            ++S   QN      LE  REM   GV PD  T   VL +C+HL     G E+      N
Sbjct: 185 TVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKN 244

Query: 178 G-FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
           G    N F+ +AL++MY  C  +   R +FDGM  + +  W A+I GY  + H + A+ L
Sbjct: 245 GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLL 304

Query: 237 FDEMLKS-GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295
           F  M +S G+  + T    V+ AC  +G   +  E  +G   K GL         ++D+ 
Sbjct: 305 FIGMEESAGLLANSTTMAGVVPACVRSGAFSRK-EAIHGFVVKRGLDRDRFVQNTLMDMY 363

Query: 296 GRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE 347
            R G+++ A+ +   M  + D   W  ++      ++ E A L   K+  LE
Sbjct: 364 SRLGKIDIAMRIFGKM-EDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLE 414



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 140/304 (46%), Gaps = 8/304 (2%)

Query: 42  GVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLD-FSVGNCLMTMYVKCGSVDY 100
           G++ ++     LL    D   + LG   H    KFG  +D  +V N L+ +Y KCG    
Sbjct: 5   GIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGA 64

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160
             K+FD++ E+  ++WN++IS           LE +R M    V P + T V V+++C++
Sbjct: 65  VYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSN 124

Query: 161 LGAHSVGLEVEQQIQANGFGS---NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
           L     GL + +Q+ A G      N F+ N L+ MY + G L  ++ +      + +V+W
Sbjct: 125 LPMPE-GLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTW 183

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMK 276
             ++     +     A++   EM+  G+ PD     SVL ACSH  +   G E + Y +K
Sbjct: 184 NTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALK 243

Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELA 336
           N   L       + +VD+     Q+     + + M     G +W A++     +++ + A
Sbjct: 244 NG-SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIG-LWNAMIAGYSQNEHDKEA 301

Query: 337 ELAF 340
            L F
Sbjct: 302 LLLF 305



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 99/228 (43%), Gaps = 42/228 (18%)

Query: 139 MKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF-LNNALINMYARCG 197
           M  LG+ PD   F  +L + A L    +G ++   +   G+G +   + N L+N+Y +CG
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 198 NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257
           +      +FD +  +  VSW ++I         E+A++ F  ML   + P     VSV++
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 120

Query: 258 ACSHAGLTDKGLEYFYGMK-NKYGLQPGPEH---YTCMVDLLGRAG-------------- 299
           ACS+  + + GL    G + + YGL+ G  +      +V + G+ G              
Sbjct: 121 ACSNLPMPE-GL--MMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGG 177

Query: 300 -----------------QLNEALELIESML---VEPDGAVWGALLGAC 327
                            QL EALE +  M+   VEPD     ++L AC
Sbjct: 178 RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPAC 225


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/482 (41%), Positives = 303/482 (62%), Gaps = 14/482 (2%)

Query: 46  NSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKC----GSVDYG 101
           N  T   +L  C   G L LG   H   +KFG   + +V N L+ MY  C    G +++ 
Sbjct: 9   NKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEFA 68

Query: 102 RKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL 161
           RK+FD++ +   ++W+AMI GY + G ++  + L+REM+  GVCPD +T V VLS+C  L
Sbjct: 69  RKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTGL 128

Query: 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
           GA  +G  VE  ++      N  L+NALI+M+A+CG++ KA  +F  M  + +VSWT++I
Sbjct: 129 GALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVI 188

Query: 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281
           GG  +HG G  AV +F+EM++SG+ PD   F+ +LSACSH+GL DKG  YF  M+  + +
Sbjct: 189 GGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSI 248

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG 341
            P  EHY CMVD+L RAG + EAL+ ++ M ++P+  VW  L+ AC+ H  ++L E    
Sbjct: 249 VPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKLGEKITR 308

Query: 342 KVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFM 401
           ++I+ EPM+   YVLLSNIY++  + +   R+R  M  + +KK PG + +EL   ++ F+
Sbjct: 309 QLIRNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTMIELDNEIYEFV 368

Query: 402 VGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS-------DQKNSEEHLNDTEVHSEKLAI 454
            GD++H Q+ EIY M+D++   ++       +       D ++ E+ LN    HSEKLAI
Sbjct: 369 AGDKSHAQSKEIYEMVDEMGKEMKRAGYMPTTTEVLLDIDDEDKEDTLNR---HSEKLAI 425

Query: 455 AFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKD 514
           AF ++NT PGT I ++KNLR+C DCH   K +SKI +R+ +VRD  RFHHFK+G CSC+D
Sbjct: 426 AFALLNTPPGTLIRIVKNLRVCDDCHSASKFISKIYNREIVVRDRNRFHHFKNGLCSCRD 485

Query: 515 YW 516
           +W
Sbjct: 486 FW 487



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 127/246 (51%), Gaps = 6/246 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  KS   +V ++A+I GYV     S+A++LF +M+ +GV  + +TM+ +L  C   
Sbjct: 71  VFDEMYKSD--SVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTGL 128

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L LG        K  +  +  + N L+ M+ KCG VD    LF  + E+ +++W ++I
Sbjct: 129 GALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVI 188

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            G A +G     + ++ EM   GV PD V F+G+LS+C+H G    G      ++ + F 
Sbjct: 189 GGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKD-FS 247

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLF 237
             P + +   +++M  R G +K+A      MP     V W  +I     HG  ++  ++ 
Sbjct: 248 IVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKLGEKIT 307

Query: 238 DEMLKS 243
            +++++
Sbjct: 308 RQLIRN 313



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 110/219 (50%), Gaps = 8/219 (3%)

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC----GNLKK 201
           P+  T+  VL +CA +G  ++G  V   +   GFG    + N L++MY  C    G ++ 
Sbjct: 8   PNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEF 67

Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261
           AR +FD M +   VSW+A+IGGY   G    A+ LF EM   G+ PD    VSVLSAC+ 
Sbjct: 68  ARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTG 127

Query: 262 AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWG 321
            G  + G ++      K  +Q   E    ++D+  + G +++A  L  SM  E +   W 
Sbjct: 128 LGALELG-KWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMR-ERNIVSWT 185

Query: 322 ALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
           +++G   +H     A   F ++++  + P +  +  LLS
Sbjct: 186 SVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLS 224


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/512 (41%), Positives = 306/512 (59%), Gaps = 8/512 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKM---REQGVEINSVTMLCLLPICVDPGYLWLGMCC 69
           V ++A++  YV+   + EA+ LF ++   ++  + +++VT+  ++ +C +   L  G C 
Sbjct: 288 VTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCL 347

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           HC  +K G  LD  VGN L++MY KCG ++   + F+++  +  +++ A+ISGY QNG +
Sbjct: 348 HCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNS 407

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              L ++ EM+  G+ P+  T   VL +CAHL     G          GF ++  + NAL
Sbjct: 408 EEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNAL 467

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           I+MYA+CG +  AR +FD M ++ +VSW  +I  YGIHG G  A+ LFD M   G++PD 
Sbjct: 468 IDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDD 527

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
             F+ ++SACSH+GL  +G  +F  M   +G+ P  EHY CMVDLL RAG   E    IE
Sbjct: 528 VTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIE 587

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDG 369
            M +EPD  VWGALL AC+++KNVEL E    K+ KL P +TG +VLLSN+YS     D 
Sbjct: 588 KMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDD 647

Query: 370 IMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGD-RNHHQTVEIYRMLDKL----ENLV 424
             +VR   +E+  +K PG S++E+ G VH F+ G  R+H Q  +I   LD+L    + L 
Sbjct: 648 AAQVRFTQKEQGFEKSPGCSWIEISGVVHTFLGGGYRSHPQLTQISNKLDELLVEMKRLG 707

Query: 425 QEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
            + + +        EE       HSEKLAIAFGI++ SP   I+V KNLR+CGDCH  IK
Sbjct: 708 YQAESSYVFQDVEEEEKERVLLYHSEKLAIAFGILSLSPDKHIIVTKNLRVCGDCHTAIK 767

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +S +  R   VRDA+RFHHFK G C+C D+W
Sbjct: 768 FISLVTKRDITVRDASRFHHFKDGICNCGDFW 799



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 110/366 (30%), Positives = 176/366 (48%), Gaps = 14/366 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+  K     V +N++ISG+ L+    + V+      +  V  NS T++ +LP     
Sbjct: 176 VFDKMHKRD--VVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQV 233

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP-EKGLITWNAM 119
             L  G   H  CV+ G   D  VG  ++ +Y KC  +DY R++FD +   K  +TW+AM
Sbjct: 234 NSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAM 293

Query: 120 ISGYAQNGLATHVLELYREMKSLG---VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
           +  Y         LEL+ ++  L    +   AVT   V+  CA+L   S G  +      
Sbjct: 294 VGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIK 353

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
           +GF  +  + N L++MYA+CG +  A   F+ M  +  VS+TAII GY  +G+ E  +++
Sbjct: 354 SGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRM 413

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSH-AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295
           F EM  SGI P+     SVL AC+H AGL      + Y +    G          ++D+ 
Sbjct: 414 FLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIIC--GFTADTMICNALIDMY 471

Query: 296 GRAGQLNEALELIESMLVEPDGAV-WGALLGACKIHKNVELAELAFGKVIK--LEPMNTG 352
            + G+++ A ++ + M     G V W  ++ A  IH     A L F  +    L+P +  
Sbjct: 472 AKCGKIDTARKVFDRM--HKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVT 529

Query: 353 YYVLLS 358
           +  L+S
Sbjct: 530 FICLIS 535



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 127/243 (52%), Gaps = 7/243 (2%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPE--KGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           L+ +Y+ C  +   R +FD++P   K ++ WN +I  YA NG     ++LY +M   G+ 
Sbjct: 57  LVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGIT 116

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P+  TF  VL +C+ L   S G E+   I+     SN +++ AL++ YA+CG L  A+ +
Sbjct: 117 PNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEV 176

Query: 206 FDGMPRKTVVSWTAIIGGYGIH--GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG 263
           FD M ++ VV+W ++I G+ +H   + EVA  L    +++ + P+ +  V VL A +   
Sbjct: 177 FDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQ--MQNDVSPNSSTIVGVLPAVAQVN 234

Query: 264 LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGAL 323
               G E  +G   + G        T ++D+ G+   ++ A  + + M +  +   W A+
Sbjct: 235 SLRHGKE-IHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAM 293

Query: 324 LGA 326
           +GA
Sbjct: 294 VGA 296



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 130/271 (47%), Gaps = 8/271 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+        V +N LI  Y  N    EA+ L+ KM   G+  N  T   +L  C   
Sbjct: 73  VFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSAL 132

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
                G   HC   +  L+ +  V   L+  Y KCG +D  +++FD++ ++ ++ WN+MI
Sbjct: 133 KEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMI 192

Query: 121 SGYA-QNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           SG++   G    V  L  +M++  V P++ T VGVL + A + +   G E+       GF
Sbjct: 193 SGFSLHEGSYDEVARLLVQMQN-DVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGF 251

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
             +  +   ++++Y +C  +  AR IFD M   K  V+W+A++G Y +      A++LF 
Sbjct: 252 VGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFC 311

Query: 239 EML---KSGIRPDGTAFVSVLSACSHAGLTD 266
           ++L      I        +V+  C  A LTD
Sbjct: 312 QLLMLKDDVIVLSAVTLATVIRVC--ANLTD 340


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/509 (41%), Positives = 304/509 (59%), Gaps = 6/509 (1%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
            + + A+I G+       +A  LF +M+  G +    T   +L  C+    L  G      
Sbjct: 654  MSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAH 713

Query: 73   CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             +  G +LD  VGN L++ Y K GS+   RK+FD++P + +++WN MI+GYAQNGL    
Sbjct: 714  ILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTA 773

Query: 133  LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            L+   +M+  GV  +  +FV +L++C+   A   G  V  +I       +  +  ALI+M
Sbjct: 774  LQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISM 833

Query: 193  YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
            YA+CG+L++A+ +FD    K VV+W A+I  Y  HG    A+  F+ M K GI+PDG+ F
Sbjct: 834  YAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTF 893

Query: 253  VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
             S+LSAC+H+GL  +G   F  +++++GL P  EHY C+V LLGRAG+  EA  LI  M 
Sbjct: 894  TSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMP 953

Query: 313  VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
              PD AVW  LLGAC+IH NV LAE A    +KL   N   YVLLSN+Y+ A   D + +
Sbjct: 954  FPPDAAVWETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAK 1013

Query: 373  VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
            +R +M  R ++K+PG S++E+   +H F+  DR+H +T EIY  L +L +L  E  G   
Sbjct: 1014 IRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYEELKRL-SLEMERAGYSP 1072

Query: 433  SDQ---KNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
              Q    N ++   +T +  HSE+LAIA+G++ T PGT I + KNLRICGDCH   K +S
Sbjct: 1073 DTQYVLHNLDKEHQETSLCTHSERLAIAYGLLKTPPGTPIRIFKNLRICGDCHTASKFIS 1132

Query: 488  KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            K+V R+ I RD+ RFH FK+G CSC+D+W
Sbjct: 1133 KLVGREIIARDSNRFHTFKNGKCSCEDFW 1161



 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 110/313 (35%), Positives = 174/313 (55%), Gaps = 2/313 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V YNALI+    +    EA   + +MR  GV +N  T L +L  C     L  G   H  
Sbjct: 351 VVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSH 410

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             + G   D  +GN L++MY +CG +   R+LF+ +P++ LI+WNA+I+GYA+       
Sbjct: 411 ISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEA 470

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           ++LY++M+S GV P  VTF+ +LS+C +  A+S G  + + I  +G  SN  L NAL+NM
Sbjct: 471 MKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNM 530

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y RCG++ +A+ +F+G   + ++SW ++I G+  HG  E A +LF EM K G+ PD   F
Sbjct: 531 YRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITF 590

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            SVL  C +    + G +  + +  + GLQ        ++++  R G L +A E+  S L
Sbjct: 591 ASVLVGCKNPEALELGRQ-IHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHS-L 648

Query: 313 VEPDGAVWGALLG 325
              +   W A++G
Sbjct: 649 RHRNVMSWTAMIG 661



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 175/338 (51%), Gaps = 4/338 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V YN ++  Y   + V E + LFG+M  +G+  + VT + LL     P  L  G   H +
Sbjct: 250 VSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKL 309

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            V  GL+ D  VG  L TM+V+CG V   ++  +   ++ ++ +NA+I+  AQ+G     
Sbjct: 310 AVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEA 369

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            E Y +M+S GV  +  T++ VL++C+   A   G  +   I   G  S+  + N+LI+M
Sbjct: 370 FEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISM 429

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YARCG+L +AR +F+ MP++ ++SW AII GY        A++L+ +M   G++P    F
Sbjct: 430 YARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTF 489

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + +LSAC+++     G +  +    + G++        ++++  R G + EA  + E   
Sbjct: 490 LHLLSACTNSSAYSDG-KMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTR 548

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEP 348
              D   W +++     H + E A   F ++ K  LEP
Sbjct: 549 AR-DIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEP 585



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 97/300 (32%), Positives = 162/300 (54%), Gaps = 3/300 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +NA+I+GY       EA+ L+ +M+ +GV+   VT L LL  C +      G   H  
Sbjct: 452 ISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHED 511

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ G+  +  + N LM MY +CGS+   + +F+    + +I+WN+MI+G+AQ+G     
Sbjct: 512 ILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAA 571

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            +L+ EMK  G+ PD +TF  VL  C +  A  +G ++   I  +G   +  L NALINM
Sbjct: 572 YKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINM 631

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y RCG+L+ A  +F  +  + V+SWTA+IGG+   G    A +LF +M   G +P  + F
Sbjct: 632 YIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTF 691

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNK-YGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            S+L AC  +   D+G +    + N  Y L  G  +   ++    ++G + +A ++ + M
Sbjct: 692 SSILKACMSSACLDEGKKVIAHILNSGYELDTGVGN--ALISAYSKSGSMTDARKVFDKM 749



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 171/318 (53%), Gaps = 2/318 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N++I+G+  +     A  LF +M+++G+E + +T   +L  C +P  L LG   H +
Sbjct: 553 ISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHML 612

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ GL LD ++GN L+ MY++CGS+    ++F  +  + +++W AMI G+A  G     
Sbjct: 613 IIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKA 672

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            EL+ +M++ G  P   TF  +L +C        G +V   I  +G+  +  + NALI+ 
Sbjct: 673 FELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISA 732

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++ G++  AR +FD MP + ++SW  +I GY  +G G  A+Q   +M + G+  +  +F
Sbjct: 733 YSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSF 792

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           VS+L+ACS     ++G +  +    K  +Q        ++ +  + G L EA E+ ++  
Sbjct: 793 VSILNACSSFSALEEG-KRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDN-F 850

Query: 313 VEPDGAVWGALLGACKIH 330
            E +   W A++ A   H
Sbjct: 851 TEKNVVTWNAMINAYAQH 868



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 154/308 (50%), Gaps = 2/308 (0%)

Query: 29  SEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCL 88
           SE   L    + +  E N    + L+  C     L      H   V+ G+  D  + N L
Sbjct: 64  SEREDLSNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLL 123

Query: 89  MTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDA 148
           + MYVKC SV    ++F ++P + +I+WN++IS YAQ G      +L+ EM++ G  P  
Sbjct: 124 INMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSK 183

Query: 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208
           +T++ +L++C        G ++  +I   G+  +P + N+L+NMY +C +L  AR +F G
Sbjct: 184 ITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSG 243

Query: 209 MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
           + R+ VVS+  ++G Y    + E  + LF +M   GI PD   ++++L A +   + D+G
Sbjct: 244 IYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEG 303

Query: 269 LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACK 328
            +  + +    GL       T +  +  R G +  A + +E+   + D  V+ AL+ A  
Sbjct: 304 -KRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEA-FADRDVVVYNALIAALA 361

Query: 329 IHKNVELA 336
            H + E A
Sbjct: 362 QHGHYEEA 369



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 158/344 (45%), Gaps = 12/344 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N+LIS Y       +A  LF +M+  G   + +T + +L  C  P  L  G   H  
Sbjct: 149 ISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSK 208

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ G   D  V N L+ MY KC  +   R++F  +  + ++++N M+  YAQ       
Sbjct: 209 IIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEEC 268

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + L+ +M S G+ PD VT++ +L +         G  + +     G  S+  +  AL  M
Sbjct: 269 IGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATM 328

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           + RCG++  A+   +    + VV + A+I     HGH E A + + +M   G+  + T +
Sbjct: 329 FVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTY 388

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +SVL+ACS +     G E  +   ++ G     +    ++ +  R G L  A EL  +M 
Sbjct: 389 LSVLNACSTSKALGAG-ELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTM- 446

Query: 313 VEPDGAVWGALLG----------ACKIHKNVELAELAFGKVIKL 346
            + D   W A++           A K++K ++   +  G+V  L
Sbjct: 447 PKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFL 490


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/517 (41%), Positives = 316/517 (61%), Gaps = 33/517 (6%)

Query: 14  CYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
            + A++SG+V N ++ EA  +F +M E+    N V+   ++      GY+          
Sbjct: 279 AWTAMVSGFVQNGMLDEATRIFEEMPEK----NEVSWNAMIA-----GYV------QSQQ 323

Query: 74  VKFGLDL-------DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQN 126
           ++   +L       + S  N ++T Y +CG++D  + LFD++P++  I+W AMISGYAQ+
Sbjct: 324 IEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQS 383

Query: 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
           G +   L L+ +MK  G   +       LSSCA + A  +G ++  ++   GF +     
Sbjct: 384 GQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAG 443

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           NAL+ MY +CG++++A  +F+ +  K +VSW  +I GY  HG G+ A+ LF+ M K  I+
Sbjct: 444 NALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIK 502

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           PD    V VLSACSH GL DKG+EYF  M   YG+    +HYTCM+DLLGRAG+L+EAL 
Sbjct: 503 PDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALN 562

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366
           L++SM   PD A WGALLGA +IH + EL E A  KV ++EP N+G YVLLSN+Y+ +  
Sbjct: 563 LMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGR 622

Query: 367 LDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE 426
              +  +R  MR++ +KK PGYS+VE++ + H+F VGD +H +   IY  L++L+ L  +
Sbjct: 623 WREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELD-LELK 681

Query: 427 HDGTKRSD-------QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDC 479
            DG   S        ++  +EH+   + HSEKLA+AFGI++  PG  I V+KNLR+C DC
Sbjct: 682 KDGFVSSTKLVLHDVEEEEKEHM--LKYHSEKLAVAFGILSIPPGRPIRVIKNLRVCEDC 739

Query: 480 HLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           H  IK +SKI  RQ IVRD+ RFHHF  G CSC DYW
Sbjct: 740 HNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/247 (33%), Positives = 129/247 (52%), Gaps = 5/247 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + + A+ISGY  +    EA+ LF KM+  G  +N   + C L  C +   L LG   H  
Sbjct: 371 ISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGR 430

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK G    +  GN L+ MY KCGS++    +F+ + EK +++WN MI+GYA++G     
Sbjct: 431 LVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEA 490

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN-GFGSNPFLNNALIN 191
           L L+  MK + + PD VT VGVLS+C+H G    G+E    +  N G  +N      +I+
Sbjct: 491 LALFESMK-MTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMID 549

Query: 192 MYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +  R G L +A  +   MP      +W A++G   IHG  E+  +  +++ +  + PD +
Sbjct: 550 LLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFE--MEPDNS 607

Query: 251 AFVSVLS 257
               +LS
Sbjct: 608 GMYVLLS 614



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 165/348 (47%), Gaps = 35/348 (10%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM--CCH 70
           V +N  IS Y+       A+S+F  MR +    ++VT   ++      GYL      C  
Sbjct: 61  VKWNRKISAYMRKGQCESALSVFNGMRRR----STVTYNAMIS-----GYLSNNKFDCAR 111

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
            +  K   D D    N +++ YVK G++   R LF+Q+PEK +++WNAM+SG+AQNG   
Sbjct: 112 KVFEKMP-DRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVE 170

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
              +++ +M    +  + +++ G+LS+    G     +E  +++  +         N L+
Sbjct: 171 EARKIFDQM----LVKNEISWNGLLSAYVQNGR----IEDARRLFDSKMDWEIVSWNCLM 222

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
             Y R   L  AR++FD MP +  +SW  +I GY  +G    A +LF+E+    IR D  
Sbjct: 223 GGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEEL---PIR-DVF 278

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
           A+ +++S     G+ D+    F  M  K  +      +  M+    ++ Q+ +A EL + 
Sbjct: 279 AWTAMVSGFVQNGMLDEATRIFEEMPEKNEVS-----WNAMIAGYVQSQQIEKARELFDQ 333

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKV-----IKLEPMNTGY 353
           M    + + W  ++       N++ A++ F ++     I    M +GY
Sbjct: 334 M-PSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGY 380



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 130/314 (41%), Gaps = 36/314 (11%)

Query: 78  LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYR 137
           +D D    N  ++ Y++ G  +    +F+ +  +  +T+NAMISGY  N       +++ 
Sbjct: 56  VDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFE 115

Query: 138 EMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQ------IQANGFGSNPFLN----- 186
           +M    +    V   G + +     A ++  ++ ++         +GF  N F+      
Sbjct: 116 KMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKI 175

Query: 187 ------------NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
                       N L++ Y + G ++ AR +FD      +VSW  ++GGY      + A 
Sbjct: 176 FDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDAR 235

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
            LFD M    +R D  ++  +++  +  GL  +    F  +  +         +T MV  
Sbjct: 236 SLFDRM---PVR-DKISWNIMITGYAQNGLLSEARRLFEELPIRDVFA-----WTAMVSG 286

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
             + G L+EA  + E M  E +   W A++      + +E A   F    ++   NT  +
Sbjct: 287 FVQNGMLDEATRIFEEM-PEKNEVSWNAMIAGYVQSQQIEKARELFD---QMPSRNTSSW 342

Query: 355 VLLSNIYSEARNLD 368
             +   Y++  N+D
Sbjct: 343 NTMVTGYAQCGNID 356



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 20/218 (9%)

Query: 108 VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVG 167
           + +  ++ WN  IS Y + G     L ++  M+            G LS+     A  V 
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVF 114

Query: 168 LEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH 227
            ++  +        +    N +++ Y + GNL  ARA+F+ MP K VVSW A++ G+  +
Sbjct: 115 EKMPDR--------DLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQN 166

Query: 228 GHGEVAVQLFDEML-KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPE 286
           G  E A ++FD+ML K+ I  +G     +LSA    G  +     F   K  + +     
Sbjct: 167 GFVEEARKIFDQMLVKNEISWNG-----LLSAYVQNGRIEDARRLF-DSKMDWEIVS--- 217

Query: 287 HYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
            + C++    R  +L++A  L + M V  D   W  ++
Sbjct: 218 -WNCLMGGYVRKKRLDDARSLFDRMPVR-DKISWNIMI 253


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/526 (40%), Positives = 312/526 (59%), Gaps = 12/526 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  +     V +NA+I+GYV N    EA+ LF +M    V  +  T++ ++  C   
Sbjct: 152 VFDEITERD--VVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQS 209

Query: 61  GYLWLGMCCHC----ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
           G + LG   H          G      + N L+ +Y KCG V+    LF+ +  K +++W
Sbjct: 210 GSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSW 269

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI-- 174
           N +I GY    L    L L++EM   G CP+ VT + VL +CAHLGA  +G  +   I  
Sbjct: 270 NTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDK 329

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
           +  G  +   L  +LI+MYA+CG+++ A  +F+ M  +++ SW A+I G+ +HG    A 
Sbjct: 330 KLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAF 389

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
            LF  M  + + PD   FV +LSACSH+GL D G + F  M   Y L P  EHY CM+DL
Sbjct: 390 DLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDL 449

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           LG +G   EA E+I +M +EPDG +W +LL ACK H N+ELAE    K+IK+EP N+G Y
Sbjct: 450 LGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIKIEPENSGSY 509

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
           VLLSNIY+ A   + + RVR ++  + +KK PG S +E+   VH F++GD+ H +  EIY
Sbjct: 510 VLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSVVHEFIIGDKLHPRRREIY 569

Query: 415 RMLDKLENLVQEHDGTKRSDQ--KNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVM 470
            ML++++  ++E      + +  +  EE   +  +  HSEKLAIAFG+I+T PGT++ ++
Sbjct: 570 HMLEEMDVQLEEAGFAPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIV 629

Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KNLR+C +CH   KL+SKI  R+ + RD TRFHHF+ G CSC DYW
Sbjct: 630 KNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 675



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 192/393 (48%), Gaps = 40/393 (10%)

Query: 4   ESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL 63
           E+I+  +L + +N ++ G+  +S    A+ ++ +M   G   NS +   LL  C      
Sbjct: 22  ETIQEPNLLI-WNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSKAF 80

Query: 64  WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVD------------------------ 99
             G   H   +K G  LD  V   L++MY + G ++                        
Sbjct: 81  EEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITGY 140

Query: 100 -------YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFV 152
                    RK+FD++ E+ +++WNAMI+GY +NG     LEL++EM    V PD  T V
Sbjct: 141 ASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLV 200

Query: 153 GVLSSCAHLGAHSVGLEVEQQI----QANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208
            V+S+CA  G+  +G +V   +      +GF S+  + NALI++Y++CG+++ A  +F+G
Sbjct: 201 SVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEG 260

Query: 209 MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
           +  K VVSW  +IGGY      + A+ LF EML+SG  P+    +SVL AC+H G  D G
Sbjct: 261 LSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIG 320

Query: 269 LE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
              + Y  K   G+       T ++D+  + G +  A ++  SML     + W A++   
Sbjct: 321 RWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSS-WNAMIFGF 379

Query: 328 KIHKNVELAELAFGKVI--KLEPMNTGYYVLLS 358
            +H     A   F ++   ++EP +  +  LLS
Sbjct: 380 AMHGRANAAFDLFSRMRGNRVEPDDITFVGLLS 412



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 125/260 (48%), Gaps = 35/260 (13%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           Y   +F+ + E  L+ WN M+ G+A +      LE+Y  M SLG  P++ +F  +L SCA
Sbjct: 16  YAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCA 75

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG----------- 208
              A   G ++  Q+   G G + +++ +LI+MYAR G L+ AR +FD            
Sbjct: 76  KSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTA 135

Query: 209 --------------------MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
                               +  + VVSW A+I GY  +G  E A++LF EM+++ +RPD
Sbjct: 136 LITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPD 195

Query: 249 GTAFVSVLSACSHAGLTDKGLE---YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
               VSV+SAC+ +G  + G +   +     + +G     +    ++DL  + G +  A 
Sbjct: 196 EGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAF 255

Query: 306 ELIESMLVEPDGAVWGALLG 325
            L E +  + D   W  L+G
Sbjct: 256 GLFEGLSCK-DVVSWNTLIG 274


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/526 (39%), Positives = 316/526 (60%), Gaps = 26/526 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDES      T  + A++SGY+ N +V EA  LF KM E+    N V+   +L   V  
Sbjct: 272 LFDESPVQDVFT--WTAMVSGYIQNRMVEEARELFDKMPER----NEVSWNAMLAGYVQG 325

Query: 61  GYLWLG------MCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLI 114
             + +       M C  +          S  N ++T Y +CG +   + LFD++P++  +
Sbjct: 326 ERMEMAKELFDVMPCRNV----------STWNTMITGYAQCGKISEAKNLFDKMPKRDPV 375

Query: 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
           +W AMI+GY+Q+G +   L L+ +M+  G   +  +F   LS+CA + A  +G ++  ++
Sbjct: 376 SWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRL 435

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
              G+ +  F+ NAL+ MY +CG++++A  +F  M  K +VSW  +I GY  HG GEVA+
Sbjct: 436 VKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVAL 495

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
           + F+ M + G++PD    V+VLSACSH GL DKG +YFY M   YG+ P  +HY CMVDL
Sbjct: 496 RFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDL 555

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           LGRAG L +A  L+++M  EPD A+WG LLGA ++H N ELAE A  K+  +EP N+G Y
Sbjct: 556 LGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMY 615

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
           VLLSN+Y+ +     + ++R+ MR++ +KK PGYS++E++ + H F VGD  H +  EI+
Sbjct: 616 VLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIF 675

Query: 415 RMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVM 470
             L++L+  +++     ++         EE       HSE+LA+A+GI+  S G  I V+
Sbjct: 676 AFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVI 735

Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KNLR+C DCH  IK +++I  R  I+RD  RFHHFK G CSC DYW
Sbjct: 736 KNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 162/340 (47%), Gaps = 29/340 (8%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NAL+S YV NS + EA  LF K RE       V+  CLL      G++         
Sbjct: 189 VSWNALLSAYVQNSKMEEACMLF-KSRENWA---LVSWNCLLG-----GFVKKKKIVEAR 239

Query: 73  CVKFGLDL-DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                +++ D    N ++T Y + G +D  R+LFD+ P + + TW AM+SGY QN +   
Sbjct: 240 QFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEE 299

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN----N 187
             EL+ +M      P+       +S  A L  +  G  +E   +   F   P  N    N
Sbjct: 300 ARELFDKM------PER----NEVSWNAMLAGYVQGERMEMAKEL--FDVMPCRNVSTWN 347

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
            +I  YA+CG + +A+ +FD MP++  VSW A+I GY   GH   A++LF +M + G R 
Sbjct: 348 TMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRL 407

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           + ++F S LS C+     + G +  +G   K G + G      ++ +  + G + EA +L
Sbjct: 408 NRSSFSSALSTCADVVALELGKQ-LHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDL 466

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE 347
            + M    D   W  ++     H   E+A L F + +K E
Sbjct: 467 FKEM-AGKDIVSWNTMIAGYSRHGFGEVA-LRFFESMKRE 504



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 134/316 (42%), Gaps = 34/316 (10%)

Query: 62  YLWLGMCCHCICVKFGLDLDFSVG-NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           Y+  G C   + V   +    SV  N +++ Y++ G  +  RKLFD++PE+ L++WN MI
Sbjct: 74  YMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMI 133

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GY +N       EL+  M    VC       G   +     A SV   + ++       
Sbjct: 134 KGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEK------- 186

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            N    NAL++ Y +   +++A  +F       +VSW  ++GG+        A Q FD M
Sbjct: 187 -NDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSM 245

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH----YTCMVDLLG 296
               +R D  ++ ++++  + +G  D+  + F            P      +T MV    
Sbjct: 246 ---NVR-DVVSWNTIITGYAQSGKIDEARQLF---------DESPVQDVFTWTAMVSGYI 292

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG-----KVIKLEPMNT 351
           +   + EA EL + M  E +   W A+L      + +E+A+  F       V     M T
Sbjct: 293 QNRMVEEARELFDKM-PERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMIT 351

Query: 352 GYYVLLSNIYSEARNL 367
           GY        SEA+NL
Sbjct: 352 GY--AQCGKISEAKNL 365



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 117/270 (43%), Gaps = 28/270 (10%)

Query: 79  DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYRE 138
           D D    N  ++ Y++ G  +   ++F ++P    +++N MISGY +NG      +L+ E
Sbjct: 61  DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120

Query: 139 MKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGN 198
           M    +    V   G + +  +LG      E+  +     +       N +++ YA+ G 
Sbjct: 121 MPERDLVSWNVMIKGYVRN-RNLGKARELFEIMPERDVCSW-------NTMLSGYAQNGC 172

Query: 199 LKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSA 258
           +  AR++FD MP K  VSW A++  Y  +   E A  LF          +  A VS    
Sbjct: 173 VDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSR-------ENWALVSW--N 223

Query: 259 CSHAGLTDK-----GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           C   G   K       ++F  M  +  +      +  ++    ++G+++EA +L +   V
Sbjct: 224 CLLGGFVKKKKIVEARQFFDSMNVRDVVS-----WNTIITGYAQSGKIDEARQLFDESPV 278

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKV 343
           + D   W A++     ++ VE A   F K+
Sbjct: 279 Q-DVFTWTAMVSGYIQNRMVEEARELFDKM 307



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 80/195 (41%), Gaps = 27/195 (13%)

Query: 159 AHLGAHSVGLEVEQQIQANGFGSNPFLN---------NALINMYARCGNLKKARAIFDGM 209
           AH  A+   L+   Q Q     + P L          N  I+ Y R G   +A  +F  M
Sbjct: 31  AHGAANFHSLKRATQTQIQKSQTKPLLKCGDSDIKEWNVAISSYMRTGRCNEALRVFKRM 90

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
           PR + VS+  +I GY  +G  E+A +LFDEM +     D  ++  ++          K  
Sbjct: 91  PRWSSVSYNGMISGYLRNGEFELARKLFDEMPER----DLVSWNVMIKGYVRNRNLGKAR 146

Query: 270 EYFYGMKNKYGLQPGPEHYTC----MVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           E F  M         PE   C    M+    + G +++A  + + M  E +   W ALL 
Sbjct: 147 ELFEIM---------PERDVCSWNTMLSGYAQNGCVDDARSVFDRM-PEKNDVSWNALLS 196

Query: 326 ACKIHKNVELAELAF 340
           A   +  +E A + F
Sbjct: 197 AYVQNSKMEEACMLF 211


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/508 (41%), Positives = 299/508 (58%), Gaps = 4/508 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + ALISGY  ++L +EA+  F +M  +G++ +++     +  C     L  G   H  
Sbjct: 482 VSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQ 541

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               G   D S+GN L+++Y +CG +      F+++  K  I+WN +ISG+AQ+G     
Sbjct: 542 SYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDA 601

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+++ +M    +     TF   +S+ A++     G ++   I   GF S+  ++NALI  
Sbjct: 602 LKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITF 661

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG+++ AR  F  MP K  VSW A+I GY  HG+G  AV LF++M + G  P+   F
Sbjct: 662 YAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTF 721

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           V VLSACSH GL  KGL YF  M  ++GL P P HY C+VDL+ RAG L+ A + IE M 
Sbjct: 722 VGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMP 781

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           +EPD  +W  LL AC +HKNVE+ E A   +++LEP ++  YVLLSN+Y+ +   D   +
Sbjct: 782 IEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQ 841

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----HD 428
            R MMR R +KK+PG S++E+K  VH F VGDR H    +IY  L +L     E     D
Sbjct: 842 TRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRLHPLADKIYEFLAELNKKAAEIGYFQD 901

Query: 429 GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
                +    E+      +HSEKLAI FG+++ S    I VMKNLR+C DCH +IK VSK
Sbjct: 902 RYSLLNDVEQEQKDPTVYIHSEKLAITFGLLSLSDTVPIHVMKNLRVCKDCHSWIKFVSK 961

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           I +R  IVRDA RFHHF+ G CSCKDYW
Sbjct: 962 ISNRAIIVRDAYRFHHFEGGICSCKDYW 989



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 148/313 (47%), Gaps = 2/313 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N+LISG         A+ LF KM+   ++ + VT+  LL  C   G L  G   H  
Sbjct: 280 VSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSY 339

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G+  D  V   L+ +YV C  +    ++F     + ++ WN M+  + +    +  
Sbjct: 340 VIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSES 399

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
             ++R+M+  G+ P+  T+  +L +C  +GA  +G ++  Q+   GF  N ++ + LI+M
Sbjct: 400 FRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDM 459

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+ G L  A  I   +    VVSWTA+I GY  H     A++ F EML  GI+ D   F
Sbjct: 460 YAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGF 519

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S +SAC+     ++G +  +      G          +V L  R G++ EA    E + 
Sbjct: 520 SSAISACAGIQALNQGRQ-IHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKID 578

Query: 313 VEPDGAVWGALLG 325
            + D   W  L+ 
Sbjct: 579 AK-DSISWNGLIS 590



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 160/323 (49%), Gaps = 4/323 (1%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           T   V +N ++  +     +SE+  +F +M+ +G+  N  T   +L  C   G L LG  
Sbjct: 377 TENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQ 436

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            H   +K G   +  V + L+ MY K G +D    +   + E  +++W A+ISGYAQ+ L
Sbjct: 437 IHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNL 496

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
               L+ ++EM + G+  D + F   +S+CA + A + G ++  Q   +G+  +  + NA
Sbjct: 497 FAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNA 556

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           L+++YARCG +K+A   F+ +  K  +SW  +I G+   G+ E A+++F +M ++ +   
Sbjct: 557 LVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEAS 616

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA-LEL 307
              F S +SA ++     +G +  + M  K G     E    ++    + G + +A  E 
Sbjct: 617 FFTFGSAVSAAANIANIKQGKQ-IHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREF 675

Query: 308 IESMLVEPDGAVWGALLGACKIH 330
            E  + E +   W A++     H
Sbjct: 676 CE--MPEKNDVSWNAMITGYSQH 696



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 155/322 (48%), Gaps = 2/322 (0%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           T  +V + A+ISG+  N    EA+ LF +M   G+         +L  C       +G  
Sbjct: 175 TKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQ 234

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            H +  K+G  L+  V N L+T+Y +  +     K+F ++  K  +++N++ISG AQ G 
Sbjct: 235 LHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGF 294

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
           +   LEL+ +MK   + PD VT   +LS+CA  GA   G ++   +   G  S+  +  A
Sbjct: 295 SDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGA 354

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           L+++Y  C ++K A  +F     + VV W  ++  +G   +   + ++F +M   G+ P+
Sbjct: 355 LLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPN 414

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
              + S+L  C+  G  D G E  +    K G Q      + ++D+  + G+L+ A  +I
Sbjct: 415 QFTYPSILRTCTSVGALDLG-EQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTA-HVI 472

Query: 309 ESMLVEPDGAVWGALLGACKIH 330
              L E D   W AL+     H
Sbjct: 473 LRTLTEDDVVSWTALISGYAQH 494



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/280 (31%), Positives = 143/280 (51%), Gaps = 12/280 (4%)

Query: 38  MREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS 97
           M  +G+  N  T + LL +C++ G L      H   +K G   +  + N L+ +Y   G 
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
           +D   K+F+ +P + + +W+ +ISG+ +  ++  VL+L+  M    V P  ++F  VL +
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 158 CAHLGAHSVGLEVEQQIQA----NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
           C+    H +G+   +QI A    +G   +P ++N LI +YA+ G +  AR +FD +  K 
Sbjct: 121 CS---GHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKD 177

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
            VSW A+I G+  +G+ E A+ LF EM  +GI P    F SVLS C+   L D G E  +
Sbjct: 178 SVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVG-EQLH 236

Query: 274 GMKNKYGLQPGPEHYTC--MVDLLGRAGQLNEALELIESM 311
            +  KYG     E Y C  +V L  R      A ++   M
Sbjct: 237 ALVFKYG--SSLETYVCNALVTLYSRMPNFVSAEKVFSKM 274



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 131/248 (52%), Gaps = 4/248 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           ++ +N LISG+  +    +A+ +F +M    +E +  T    +    +   +  G   H 
Sbjct: 582 SISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHA 641

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + +K G D D  V N L+T Y KCGS++  R+ F ++PEK  ++WNAMI+GY+Q+G    
Sbjct: 642 MIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNE 701

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGL-EVEQQIQANGFGSNPFLNNALI 190
            + L+ +MK +G  P+ VTFVGVLS+C+H+G  + GL   E   + +G    P     ++
Sbjct: 702 AVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVV 761

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++ +R G L +AR   + MP       W  ++    +H + EV       +L+  + P+ 
Sbjct: 762 DLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLE--LEPED 819

Query: 250 TAFVSVLS 257
           +A   +LS
Sbjct: 820 SATYVLLS 827



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 147/315 (46%), Gaps = 7/315 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGY---LWLGMCCHC 71
           ++ +ISG++   + +  + LF  M E+ V    ++   +L  C   G+   +      H 
Sbjct: 79  WDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRAC--SGHRIGIRYAEQIHA 136

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +  GL     + N L+ +Y K G +   RK+FD +  K  ++W AMISG++QNG    
Sbjct: 137 RIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEE 196

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            + L+ EM + G+ P    F  VLS C  +    VG ++   +   G     ++ NAL+ 
Sbjct: 197 AIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVT 256

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +Y+R  N   A  +F  M  K  VS+ ++I G    G  + A++LF +M +  ++PD   
Sbjct: 257 LYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVT 316

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
             S+LSAC+  G   KG E  +    K G+         ++DL      +  A E+  + 
Sbjct: 317 VASLLSACASNGALCKG-EQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTA 375

Query: 312 LVEPDGAVWGALLGA 326
             E +  +W  +L A
Sbjct: 376 QTE-NVVLWNVMLVA 389



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 88/187 (47%), Gaps = 1/187 (0%)

Query: 139 MKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGN 198
           M+  G+C +  T++ +L  C + G+     ++  +I   GFG+   L N L+++Y   G+
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 199 LKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSA 258
           L     +F+ MP ++V SW  II G+         + LF  M++  + P   +F SVL A
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 259 CSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGA 318
           CS   +  +  E  +     +GL   P     ++ L  + G +  A ++ ++ L   D  
Sbjct: 121 CSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDN-LCTKDSV 179

Query: 319 VWGALLG 325
            W A++ 
Sbjct: 180 SWVAMIS 186


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/521 (42%), Positives = 314/521 (60%), Gaps = 7/521 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGV-EINSVTMLCLLPICVD 59
           VFD       +T  ++ALI G+VL S +++A  LF  M  QG+  ++  ++   L  C  
Sbjct: 295 VFDAMPARNEVT--WSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACAS 352

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
             +L +G   H +  K G+  D + GN L++MY K G +D    LFD++  K  ++++A+
Sbjct: 353 LDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSAL 412

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           +SGY QNG A     ++++M++  V PDA T V ++ +C+HL A   G      +   G 
Sbjct: 413 VSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGL 472

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            S   + NALI+MYA+CG +  +R +F+ MP + +VSW  +I GYGIHG G+ A  LF E
Sbjct: 473 ASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLE 532

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M   G  PDG  F+ +LSACSH+GL  +G  +F+ M++ YGL P  EHY CMVDLL R G
Sbjct: 533 MNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGG 592

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
            L+EA E I+SM +  D  VW ALLGAC+++KN++L +     + +L P  TG +VLLSN
Sbjct: 593 FLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSN 652

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
           IYS A   D    VR++ + +  KK PG S++E+ G +H F+ GD++H Q+ EIYR LD 
Sbjct: 653 IYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDN 712

Query: 420 ----LENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRI 475
               ++ L  + D +        EE       HSEKLAIA+GI++ S    I V KNLR+
Sbjct: 713 ILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRV 772

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           CGDCH  IK +S +  R  IVRDA RFHHFK+G CSC D+W
Sbjct: 773 CGDCHTVIKHISLLKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 163/331 (49%), Gaps = 15/331 (4%)

Query: 13  VCYNALISGYVLNSLVSEAVS--LFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
           V +NA+++GY  + +   AV+  L  +M+   +  N+ T++ LLP+    G L  G   H
Sbjct: 192 VAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVH 251

Query: 71  CICVKFGLDLDFS----------VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
              ++  L  + +          +G  L+ MY KCGS+ Y R++FD +P +  +TW+A+I
Sbjct: 252 AYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALI 311

Query: 121 SGYAQNGLATHVLELYREMKSLGVC-PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
            G+      T    L++ M + G+C     +    L +CA L    +G ++   +  +G 
Sbjct: 312 GGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGV 371

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            ++    N+L++MYA+ G + +A A+FD M  K  VS++A++ GY  +G  E A  +F +
Sbjct: 372 HADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKK 431

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M    + PD    VS++ ACSH      G    +G     GL         ++D+  + G
Sbjct: 432 MQACNVEPDAATMVSLIPACSHLAALQHG-RCSHGSVIIRGLASETSICNALIDMYAKCG 490

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIH 330
           +++ + ++  +M+   D   W  ++    IH
Sbjct: 491 RIDLSRQVF-NMMPSRDIVSWNTMIAGYGIH 520



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 121/425 (28%), Positives = 182/425 (42%), Gaps = 69/425 (16%)

Query: 15  YNALISGYVLNSLVSEA--VSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           YN LI  Y  +S  + A  + L+ +M    V  N+ T    L  C        G   H  
Sbjct: 91  YNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKACSALADHHCGRAIHRH 150

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +  GL  D  V   L+ MYVKC  +     +F  +P + L+ WNAM++GYA +G+  H 
Sbjct: 151 AIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHA 210

Query: 133 LE--LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ-QIQA---------NGFG 180
           +   L  +M+   + P+A T V +L   A  GA + G  V   +I+A         +   
Sbjct: 211 VAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLT 270

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
               L  AL++MYA+CG+L  AR +FD MP +  V+W+A+IGG+ +      A  LF  M
Sbjct: 271 DGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAM 330

Query: 241 L------------------------------------KSGIRPDGTAFVSVLSACSHAGL 264
           L                                    KSG+  D TA  S+LS  + AGL
Sbjct: 331 LAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGL 390

Query: 265 TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWG 321
            D+ +  F  M  K  +      Y+ +V    + G+  EA  + + M    VEPD A   
Sbjct: 391 IDQAIALFDEMAVKDTVS-----YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMV 445

Query: 322 ALLGACKIHKNVELAELAFGK------VIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRM 375
           +L+ AC       LA L  G+      +I+     T     L ++Y++   +D   +V  
Sbjct: 446 SLIPACS-----HLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFN 500

Query: 376 MMRER 380
           MM  R
Sbjct: 501 MMPSR 505



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 124/266 (46%), Gaps = 14/266 (5%)

Query: 92  YVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG--LATHVLELYREMKSLGVCPDAV 149
           ++  G +     LFDQ+P   + T+N +I  Y+ +    A   L LYR M    V P+  
Sbjct: 67  HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNY 126

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
           TF   L +C+ L  H  G  + +     G  ++ F++ AL++MY +C  L  A  IF  M
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 186

Query: 210 PRKTVVSWTAIIGGYGIHG--HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
           P + +V+W A++ GY  HG  H  VA  L  +M    +RP+ +  V++L   +  G   +
Sbjct: 187 PARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQ 246

Query: 268 GLE-YFYGMK--------NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGA 318
           G   + Y ++        +K  L  G    T ++D+  + G L  A  + ++M    +  
Sbjct: 247 GTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR-NEV 305

Query: 319 VWGALLGACKIHKNVELAELAFGKVI 344
            W AL+G   +   +  A L F  ++
Sbjct: 306 TWSALIGGFVLCSRMTQAFLLFKAML 331


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/526 (43%), Positives = 312/526 (59%), Gaps = 26/526 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLC---LLPIC 57
           +F+ES      T  + A++SGYV N +V EA   F +M  +  EI+   ML         
Sbjct: 254 LFNESPIRDVFT--WTAMVSGYVQNGMVDEARKYFDEMPVKN-EISYNAMLAGYVQYKKM 310

Query: 58  VDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWN 117
           V  G L+  M C  I          S  N ++T Y + G +   RKLFD +P++  ++W 
Sbjct: 311 VIAGELFEAMPCRNI----------SSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWA 360

Query: 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
           A+ISGYAQNG     L ++ EMK  G   +  TF   LS+CA + A  +G +V  Q+   
Sbjct: 361 AIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKA 420

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
           GF +  F+ NAL+ MY +CG+  +A  +F+G+  K VVSW  +I GY  HG G  A+ LF
Sbjct: 421 GFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLF 480

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
           + M K+G++PD    V VLSACSH+GL D+G EYFY M   Y ++P  +HYTCM+DLLGR
Sbjct: 481 ESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGR 540

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
           AG+L EA  L+ +M  +P  A WGALLGA +IH N EL E A   V K+EP N+G YVLL
Sbjct: 541 AGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLL 600

Query: 358 SNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML 417
           SN+Y+ +     + ++R  MRE  ++K  GYS+VE++ ++H F VGD  H +   IY  L
Sbjct: 601 SNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKIHTFSVGDCFHPEKDRIYAFL 660

Query: 418 DKLENLVQEHDGTKRSD-------QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVM 470
           ++L+ L    +G   S        ++  +EH+   + HSEKLA+AFGI+    G  I VM
Sbjct: 661 EELD-LKMRREGYVSSTKLVLHDVEEEEKEHM--LKYHSEKLAVAFGILTIPAGRPIRVM 717

Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KNLR+C DCH  IK +SKIV R  I+RD+ RFHHF  G CSC DYW
Sbjct: 718 KNLRVCQDCHNAIKHISKIVGRLIILRDSHRFHHFSEGICSCGDYW 763



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 137/299 (45%), Gaps = 60/299 (20%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V YNA+ISGY+ N+  S A  LF KM E+                              
Sbjct: 77  SVSYNAMISGYLRNAKFSLARDLFDKMPER------------------------------ 106

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                    D    N ++T YV+   +    KLFD +P+K +++WNAM+SGYAQNG    
Sbjct: 107 ---------DLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDE 157

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
             E++ +M       +++++ G+L++  H G     L+  +++  +         N L+ 
Sbjct: 158 AREVFNKMPH----RNSISWNGLLAAYVHNGR----LKEARRLFESQSNWELISWNCLMG 209

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
            Y +   L  AR +FD MP + V+SW  +I GY   G    A +LF+E   S IR D   
Sbjct: 210 GYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNE---SPIR-DVFT 265

Query: 252 FVSVLSACSHAGLTDKGLEYFYGM--KNKY---GLQPGPEHYTCMVDLLGRAGQLNEAL 305
           + +++S     G+ D+  +YF  M  KN+     +  G   Y  MV     AG+L EA+
Sbjct: 266 WTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVI----AGELFEAM 320



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/306 (21%), Positives = 124/306 (40%), Gaps = 57/306 (18%)

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           VKF  D D    N  ++ +++ G  D   ++F+ +P +  +++NAMISGY +N   +   
Sbjct: 39  VKFK-DPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLAR 97

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
           +L+ +M    +                                       F  N ++  Y
Sbjct: 98  DLFDKMPERDL---------------------------------------FSWNVMLTGY 118

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
            R   L +A  +FD MP+K VVSW A++ GY  +G  + A ++F++M       +  ++ 
Sbjct: 119 VRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHR----NSISWN 174

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
            +L+A  H G   +    F    N   +      + C++    +   L +A +L + M V
Sbjct: 175 GLLAAYVHNGRLKEARRLFESQSNWELIS-----WNCLMGGYVKRNMLGDARQLFDRMPV 229

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGK-----VIKLEPMNTGYYVLLSNIYSEARNLD 368
             D   W  ++       ++  A+  F +     V     M +GY  + + +  EAR   
Sbjct: 230 R-DVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGY--VQNGMVDEARKYF 286

Query: 369 GIMRVR 374
             M V+
Sbjct: 287 DEMPVK 292


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/525 (42%), Positives = 317/525 (60%), Gaps = 16/525 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  +     V + A+I GY+ +    EA+ LF  + E G+  +S T++ +L  C   
Sbjct: 159 VFDEIPEKN--VVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRV 216

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  G        + G   +  V   L+ MY KCGS++  R++FD + EK ++ W+A+I
Sbjct: 217 GDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALI 276

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GYA NG+    L+++ EM+   V PD    VGV S+C+ LGA  +G      +  + F 
Sbjct: 277 QGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFL 336

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           SNP L  ALI+ YA+CG++ +A+ +F GM RK  V + A+I G  + GH   A  +F +M
Sbjct: 337 SNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQM 396

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           +K G++PDG  FV +L  C+HAGL D G  YF GM + + + P  EHY CMVDL  RAG 
Sbjct: 397 VKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGL 456

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L EA +LI SM +E +  VWGALLG C++HK+ +LAE    ++I+LEP N+G+YVLLSNI
Sbjct: 457 LVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNI 516

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           YS +   D   ++R  + ++ ++K PG S+VE+ G VH F+VGD +H  + +IY   +KL
Sbjct: 517 YSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVVHEFLVGDTSHPLSHKIY---EKL 573

Query: 421 ENLVQEHDGTKRSDQKNSEEHLNDTE---------VHSEKLAIAFGIINTSPGTEIVVMK 471
           E+L +  D  +      +E  L D E          HSEKLA+AF +I+T     I V+K
Sbjct: 574 ESLFK--DLREAGYNPTTEFVLFDVEEEEKEYFLGCHSEKLAVAFALISTGAKDVIRVVK 631

Query: 472 NLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           NLR+CGDCH  IKLVSK+  R+ IVRD  RFHHF  G CSC+DYW
Sbjct: 632 NLRVCGDCHEAIKLVSKVTGREIIVRDNNRFHHFTEGSCSCRDYW 676



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 113/346 (32%), Positives = 191/346 (55%), Gaps = 5/346 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD-PGYLWLGMCCHCIC 73
           YN LI G V N    +AVS++  MR+ G   ++ T   +L  C   P Y  +G+  H + 
Sbjct: 69  YNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLV 128

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           +K G D D  V   L+ +Y K G +   RK+FD++PEK +++W A+I GY ++G     L
Sbjct: 129 IKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEAL 188

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
            L+R +  +G+ PD+ T V +L +C+ +G  + G  ++  ++ +G   N F+  +L++MY
Sbjct: 189 GLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMY 248

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
           A+CG++++AR +FDGM  K VV W+A+I GY  +G  + A+ +F EM +  +RPD  A V
Sbjct: 249 AKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMV 308

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
            V SACS  G  + G  +  G+ +       P   T ++D   + G + +A E+ + M  
Sbjct: 309 GVFSACSRLGALELG-NWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMR- 366

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLL 357
             D  V+ A++    +  +V  A   FG+++K  ++P    +  LL
Sbjct: 367 RKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLL 412



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/257 (32%), Positives = 124/257 (48%), Gaps = 3/257 (1%)

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
           CHC+ ++ GL  D  + N L+   +   +  Y   +F Q P   +  +N +I G   N  
Sbjct: 22  CHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRGMVSNDA 81

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAH-SVGLEVEQQIQANGFGSNPFLNN 187
               + +Y  M+  G  PD  TF  VL +C  L  +  VGL +   +   GF  + F+  
Sbjct: 82  FRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKT 141

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
            L+ +Y++ G L  AR +FD +P K VVSWTAII GY   G    A+ LF  +L+ G+RP
Sbjct: 142 GLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRP 201

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           D    V +L ACS  G    G  +  G   + G        T +VD+  + G + EA  +
Sbjct: 202 DSFTLVRILYACSRVGDLASG-RWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRV 260

Query: 308 IESMLVEPDGAVWGALL 324
            + M VE D   W AL+
Sbjct: 261 FDGM-VEKDVVCWSALI 276


>gi|413941558|gb|AFW74207.1| hypothetical protein ZEAMMB73_978994 [Zea mays]
          Length = 580

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/508 (42%), Positives = 311/508 (61%), Gaps = 6/508 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           + +L        L + A++ +  +    +  +S     +   C D   +  GM  H   V
Sbjct: 73  FCSLTRATARRGLPAAALAFYRCLLAAALPFSSFAFTSVAKACADLSAIRAGMGIHAHAV 132

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             GL  +  V   L+ +Y KCG +D  RKLFD + +K ++ WNAMISGY QNGLA   +E
Sbjct: 133 LLGLGSNRFVQTSLVVLYSKCGQLDVARKLFDAIRDKSVVAWNAMISGYEQNGLAGRAIE 192

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           +YREM+  G  PD+ TFV  LS+CA  GA  +G +V++ I +     N  L  AL+NMYA
Sbjct: 193 VYREMQMAGEAPDSATFVATLSACAQAGALDLGRQVDKLIVSERMEMNVVLGAALVNMYA 252

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           RCG + KAR  F+ +  + VV+WT++I GYG+HGHG  AV+LF+ M + G  P+   FV+
Sbjct: 253 RCGLVNKAREWFNMLQERNVVTWTSMIAGYGMHGHGGEAVKLFNLMRQQGPPPNDVTFVA 312

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI-ESMLV 313
           VLSAC+HAGL  +G + F  MK+ YGL P  EHY  MVD+ GRAG L++A+  I +S+  
Sbjct: 313 VLSACAHAGLVSEGRDAFASMKSVYGLVPRVEHYCSMVDMYGRAGLLDDAMRFIHDSIPG 372

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
           EP   VW A+LGACK+HK+  L      ++I LEP +  + VLLSN+Y+ +  ++ + +V
Sbjct: 373 EPGPEVWTAMLGACKMHKDFNLGVEVAERLIALEPESPSHRVLLSNLYALSGKMNHVEKV 432

Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS 433
           R  M +RRLKK  GYS +E+ G  HLF +G+++H +T EIY+ L+KL   + +     ++
Sbjct: 433 RDTMIKRRLKKPIGYSLIEIAGVAHLFRMGEKSHPKTSEIYQYLEKLIEKITDVGYVPKT 492

Query: 434 DQ----KNSEEHLNDTEVHSEKLAIAFGIINTSP-GTEIVVMKNLRICGDCHLFIKLVSK 488
           D        EE       H EKLA+AFG++ TS   T I ++KNLRIC DCHL IK +S 
Sbjct: 493 DSVLHELEEEEREFALRYHGEKLAVAFGLMMTSGCTTPIRIIKNLRICEDCHLAIKYMSA 552

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           + +R+ IVRD  RFHHFK+G CSC++YW
Sbjct: 553 VENREIIVRDMHRFHHFKAGKCSCQEYW 580



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 135/250 (54%), Gaps = 7/250 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +NA+ISGY  N L   A+ ++ +M+  G   +S T +  L  C   G L LG     
Sbjct: 171 VVAWNAMISGYEQNGLAGRAIEVYREMQMAGEAPDSATFVATLSACAQAGALDLGRQVDK 230

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + V   ++++  +G  L+ MY +CG V+  R+ F+ + E+ ++TW +MI+GY  +G    
Sbjct: 231 LIVSERMEMNVVLGAALVNMYARCGLVNKAREWFNMLQERNVVTWTSMIAGYGMHGHGGE 290

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--AL 189
            ++L+  M+  G  P+ VTFV VLS+CAH G  S G +    +++  +G  P + +  ++
Sbjct: 291 AVKLFNLMRQQGPPPNDVTFVAVLSACAHAGLVSEGRDAFASMKSV-YGLVPRVEHYCSM 349

Query: 190 INMYARCGNLKKA-RAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           ++MY R G L  A R I D +P +     WTA++G   +H    + V++ + ++   + P
Sbjct: 350 VDMYGRAGLLDDAMRFIHDSIPGEPGPEVWTAMLGACKMHKDFNLGVEVAERLI--ALEP 407

Query: 248 DGTAFVSVLS 257
           +  +   +LS
Sbjct: 408 ESPSHRVLLS 417



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 8/232 (3%)

Query: 102 RKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL 161
           R L    P      + ++    A+ GL    L  YR + +  +   +  F  V  +CA L
Sbjct: 59  RLLAASHPAPDSFLFCSLTRATARRGLPAAALAFYRCLLAAALPFSSFAFTSVAKACADL 118

Query: 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
            A   G+ +       G GSN F+  +L+ +Y++CG L  AR +FD +  K+VV+W A+I
Sbjct: 119 SAIRAGMGIHAHAVLLGLGSNRFVQTSLVVLYSKCGQLDVARKLFDAIRDKSVVAWNAMI 178

Query: 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE---YFYGMKNK 278
            GY  +G    A++++ EM  +G  PD   FV+ LSAC+ AG  D G +        + +
Sbjct: 179 SGYEQNGLAGRAIEVYREMQMAGEAPDSATFVATLSACAQAGALDLGRQVDKLIVSERME 238

Query: 279 YGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
             +  G      +V++  R G +N+A E   +ML E +   W +++    +H
Sbjct: 239 MNVVLG----AALVNMYARCGLVNKAREWF-NMLQERNVVTWTSMIAGYGMH 285


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/511 (41%), Positives = 306/511 (59%), Gaps = 9/511 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           VC++A+I GYVL+  +S+A++L+  M    G+     T+  +L  C     L  G   HC
Sbjct: 277 VCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHC 336

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K G+DLD +VGN L++MY KCG +D      D++  K  ++++A+ISG  QNG A  
Sbjct: 337 HMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEK 396

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L ++R+M+S G+ P   T + +L +C+HL A   G          GF ++  + NA+I+
Sbjct: 397 ALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIID 456

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY++CG +  +R IFD M  + ++SW  +I GYGIHG    A+ LF E+   G++PD   
Sbjct: 457 MYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVT 516

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            ++VLSACSH+GL  +G  +F  M   + ++P   HY CMVDLL RAG L+EA   I+ M
Sbjct: 517 LIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRM 576

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
              P+  +WGALL AC+ HKN+E+ E    K+  L P  TG +VL+SNIYS     D   
Sbjct: 577 PFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAA 636

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
            +R + R    KK PG S+VE+ G +H+F+ G ++H Q+  I + L +L  LVQ      
Sbjct: 637 YIRSIQRHHGYKKSPGCSWVEISGVIHVFIGGHQSHPQSASINKKLQEL--LVQMKKLGY 694

Query: 432 RSDQK------NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
           R+D          EE       HSEK+AIAFGI+NTSP + I+V KNLRIC DCH  IK 
Sbjct: 695 RADSSFVLHDVEEEEKEQILLYHSEKVAIAFGILNTSPSSRILVTKNLRICVDCHSAIKF 754

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           ++ + +R+  VRDA+RFHHFK G C+C+D+W
Sbjct: 755 ITLLTEREITVRDASRFHHFKDGICNCQDFW 785



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/278 (32%), Positives = 144/278 (51%), Gaps = 8/278 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           TV Y+A+ISG V N    +A+ +F +M+  G+     TM+ LLP C     L  G CCH 
Sbjct: 378 TVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHG 437

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             V  G   D S+ N ++ MY KCG +   R++FD++  + +I+WN MI GY  +GL   
Sbjct: 438 YTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVE 497

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--AL 189
            L L++E+++LG+ PD VT + VLS+C+H G  + G      +  N F   P + +   +
Sbjct: 498 ALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQN-FNIKPRMAHYICM 556

Query: 190 INMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           +++ AR GNL +A      MP    V  W A++     H + E+  Q+  ++   G  P+
Sbjct: 557 VDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLG--PE 614

Query: 249 GTA-FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
           GT  FV + +  S  G  D    Y   ++  +G +  P
Sbjct: 615 GTGNFVLMSNIYSSVGRWDDA-AYIRSIQRHHGYKKSP 651



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 166/347 (47%), Gaps = 9/347 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+  K +   V +N +I  Y  +    +++ L+  M + GV   + T   LL  C   
Sbjct: 63  VFDQIPKPS--VVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSSL 120

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP--EKGLITWNA 118
             L LG   H      GL +D  V   L+ MY KCG +   + LF+ +   ++ ++ WNA
Sbjct: 121 QALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNA 180

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           MI+ ++ + L    +    +M+  GV P++ T V +L +     A   G  +      N 
Sbjct: 181 MIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNF 240

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
           F  N  L  AL++MYA+C  L  AR IF+ + +K  V W+A+IGGY +H     A+ L+D
Sbjct: 241 FFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYD 300

Query: 239 EML-KSGIRPDGTAFVSVLSACSHAGLTD-KGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           +ML   G+ P      ++L AC  A LTD K  +  +    K G+         ++ +  
Sbjct: 301 DMLCIYGLNPTPATLATMLRAC--AQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYA 358

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
           + G ++ A+  ++ M+ + D   + A++  C  +   E A L F ++
Sbjct: 359 KCGIMDNAVGFLDEMIAK-DTVSYSAIISGCVQNGYAEKALLIFRQM 404



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 124/252 (49%), Gaps = 6/252 (2%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L   ++    +   R +FDQ+P+  ++ WN MI  YA +G     + LY  M  LGV P 
Sbjct: 47  LARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPT 106

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
             TF  +L +C+ L A  +G  +       G   + +++ AL++MYA+CG+L +A+ +F+
Sbjct: 107 NFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFN 166

Query: 208 GMPR--KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
            +    + +V+W A+I  +  H      +    +M ++G+ P+ +  VS+L     A   
Sbjct: 167 SISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANAL 226

Query: 266 DKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
            +G   + Y ++N +      +  T ++D+  +   L  A ++  ++  + D   W A++
Sbjct: 227 HQGKAIHAYYIRNFFFDNVVLQ--TALLDMYAKCHLLFYARKIFNTVNKKND-VCWSAMI 283

Query: 325 GACKIHKNVELA 336
           G   +H ++  A
Sbjct: 284 GGYVLHDSISDA 295


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/514 (41%), Positives = 316/514 (61%), Gaps = 5/514 (0%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           S    V Y ++I+GY    L  EAV LF +M E+G+  +  T+  +L  C     L  G 
Sbjct: 358 SGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGK 417

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
             H    +  +  D  V N LM MY KCGS+     +F ++  K +I+WN +I GY++N 
Sbjct: 418 RVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNC 477

Query: 128 LATHVLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
            A   L L+  +       PD  T   VL +CA L A   G E+   I  NG+ S+  + 
Sbjct: 478 YANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVA 537

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           N+L++MYA+CG L  AR +FD +  K +VSWT +I GYG+HG G+ A+ LF++M ++GI 
Sbjct: 538 NSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIE 597

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           PD  +FVS+L ACSH+GL D+G  +F  M+++  ++P  EHY C+VD+L R G L++A  
Sbjct: 598 PDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYR 657

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366
            IE+M + PD  +WGALL  C+IH +V+LAE    KV +LEP NTGYYVL++NIY+EA  
Sbjct: 658 FIENMPIPPDATIWGALLCGCRIHHDVKLAERVAEKVFELEPENTGYYVLMANIYAEAEK 717

Query: 367 LDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLE-NLVQ 425
            + + R+R  + +R L+K+PG S++E+KGRV++F+ GD ++ +T +I   L  +   +++
Sbjct: 718 WEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETEKIEAFLRGVRARMIE 777

Query: 426 E-HDGTKRSDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLF 482
           E +    +    ++EE   +  +  HSEKLA+A GII++  G  I V KNLR+CGDCH  
Sbjct: 778 EGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEM 837

Query: 483 IKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            K +SK+  R+ ++RD+ RFH FK G CSC+ +W
Sbjct: 838 AKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/382 (30%), Positives = 194/382 (50%), Gaps = 16/382 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  +     + +N++I+GYV N L  + +S+F +M   G+EI+  T++ +   C D 
Sbjct: 252 VFDEMTERD--VISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADS 309

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             + LG   HC  VK     +    N L+ MY KCG +D  + +F ++  + ++++ +MI
Sbjct: 310 RLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMI 369

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GYA+ GLA   ++L+ EM+  G+ PD  T   VL+ CA       G  V + I+ N  G
Sbjct: 370 AGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMG 429

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            + F++NAL++MYA+CG++++A  +F  M  K ++SW  +IGGY  + +   A+ LF+ +
Sbjct: 430 FDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLL 489

Query: 241 L-KSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYT-CMVDLLGR 297
           L +    PD      VL AC+     DKG E + Y M+N Y       H    +VD+  +
Sbjct: 490 LVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGY---FSDRHVANSLVDMYAK 546

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYV 355
            G L  A  L +  +   D   W  ++    +H   + A   F ++ +  +EP    +  
Sbjct: 547 CGALLLARLLFDD-ITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVS 605

Query: 356 LL-----SNIYSEARNLDGIMR 372
           LL     S +  E      IMR
Sbjct: 606 LLYACSHSGLVDEGWRFFNIMR 627



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 168/376 (44%), Gaps = 41/376 (10%)

Query: 44  EINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRK 103
           +I+  T+  +L +C D   L  G          G  LD ++G+ L  MY  CG +    +
Sbjct: 91  DIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASR 150

Query: 104 LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163
           +FDQV  +  + WN +++  A++G  +  + L+++M S GV  D+ TF  V  S + L +
Sbjct: 151 VFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRS 210

Query: 164 HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGG 223
            + G ++   I  +GFG    + N+L+  Y +   +  AR +FD M  + V+SW +II G
Sbjct: 211 VNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIING 270

Query: 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL------------------T 265
           Y  +G  E  + +F +ML SGI  D    VSV + C+ + L                   
Sbjct: 271 YVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSRE 330

Query: 266 DKGLEYFYGMKNKYGLQPGPE------------HYTCMVDLLGRAGQLNEALELIESMLV 313
           D+       M +K G     +             YT M+    R G   EA++L E M  
Sbjct: 331 DRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 390

Query: 314 E---PDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLD 368
           E   PD     A+L  C   +N  L E   GK +   ++  + G+ + +SN   +     
Sbjct: 391 EGISPDVYTVTAVLNCCA--RNRLLDE---GKRVHEWIKENDMGFDIFVSNALMDMYAKC 445

Query: 369 GIMR-VRMMMRERRLK 383
           G MR   ++  E R+K
Sbjct: 446 GSMREAELVFSEMRVK 461


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/521 (42%), Positives = 312/521 (59%), Gaps = 7/521 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLC-LLPICVD 59
           VFD       +T  ++ALI G+VL S +++A  LF  M  QG+   S T +   L  C  
Sbjct: 180 VFDAMPARNEVT--WSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACAS 237

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
             +L +G   H +  K G+  D + GN L++MY K G +D    LFD++  K  ++++A+
Sbjct: 238 LDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSAL 297

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           +SGY QNG A     ++++M++  V PDA T V ++ +C+HL A   G      +   G 
Sbjct: 298 VSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGL 357

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            S   + NALI+MYA+CG +  +R +F+ MP + +VSW  +I GYGIHG G+ A  LF E
Sbjct: 358 ASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLE 417

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M   G  PDG  F+ +LSACSH+GL  +G  +F+ M + YGL P  EHY CMVDLL R G
Sbjct: 418 MNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGG 477

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
            L+EA E I+SM +  D  VW ALLGAC+++KN++L +     + +L P  TG +VLLSN
Sbjct: 478 FLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSN 537

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
           IYS A   D    VR++ + +  KK PG S++E+ G +H F+ GD++H Q+ EIYR LD 
Sbjct: 538 IYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDN 597

Query: 420 ----LENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRI 475
               ++ L  + D +        EE       HSEKLAIA+GI++ S    I V KNLR+
Sbjct: 598 ILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRV 657

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           CGDCH  IK +S +  R  IVRDA RFHHFK+G CSC D+W
Sbjct: 658 CGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 698



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 164/331 (49%), Gaps = 15/331 (4%)

Query: 13  VCYNALISGYVLNSLVSEAVS--LFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
           V +NA+++GY  + +   AV+  L  +M+   +  N+ T++ LLP+    G L  G   H
Sbjct: 77  VAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVH 136

Query: 71  CICVKFGLDLDFS----------VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             C++  L  + +          +G  L+ MY KCGS+ Y R++FD +P +  +TW+A+I
Sbjct: 137 AYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALI 196

Query: 121 SGYAQNGLATHVLELYREMKSLGVC-PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
            G+      T    L++ M + G+C     +    L +CA L    +G ++   +  +G 
Sbjct: 197 GGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGV 256

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            ++    N+L++MYA+ G + +A A+FD M  K  VS++A++ GY  +G  E A  +F +
Sbjct: 257 HADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKK 316

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M    + PD    VS++ ACSH      G    +G     GL         ++D+  + G
Sbjct: 317 MQACNVEPDAATMVSLIPACSHLAALQHG-RCSHGSVIIRGLASETSICNALIDMYAKCG 375

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIH 330
           +++ + ++  +M+   D   W  ++    IH
Sbjct: 376 RIDLSRQVF-NMMPSRDIVSWNTMIAGYGIH 405



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 112/402 (27%), Positives = 166/402 (41%), Gaps = 71/402 (17%)

Query: 38  MREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS 97
           M    V  N+ T    L  C        G   H   +  GL  D  V   L+ MYVKC  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGL----ATHVLELYREMKSLGVCPDAVTFVG 153
           +     +F  +P + L+ WNAM++GYA +G+      H+L +  +M  L   P+A T V 
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLR--PNASTLVA 118

Query: 154 VLSSCAHLGAHSVGLEVE----------QQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
           +L   A  GA + G  V            +   +       L  AL++MYA+CG+L  AR
Sbjct: 119 LLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYAR 178

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML---------------------- 241
            +FD MP +  V+W+A+IGG+ +      A  LF  ML                      
Sbjct: 179 RVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASL 238

Query: 242 --------------KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH 287
                         KSG+  D TA  S+LS  + AGL D+ +  F  M  K  +      
Sbjct: 239 DHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS----- 293

Query: 288 YTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGACKIHKNVELAELAFGK-- 342
           Y+ +V    + G+  EA  + + M    VEPD A   +L+ AC       LA L  G+  
Sbjct: 294 YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACS-----HLAALQHGRCS 348

Query: 343 ----VIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380
               +I+     T     L ++Y++   +D   +V  MM  R
Sbjct: 349 HGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSR 390


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/520 (41%), Positives = 304/520 (58%), Gaps = 6/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE I+     V +N L+ G        EA+    KM  +G   +S T+  +LPI  + 
Sbjct: 126 VFDEMIERD--VVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAEC 183

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             +  G+  H    + G D D  VG+ L+ MY  C   DY  K+FD +P +  I WN+++
Sbjct: 184 ADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLL 243

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +G AQNG     L ++R M   GV P  VTF  ++  C +L +   G ++   +   GF 
Sbjct: 244 AGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFE 303

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            N F++++LI+MY +CG +  A  IFD M    VVSWTA+I GY +HG    A+ LF+ M
Sbjct: 304 DNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERM 363

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
                +P+   F++VL+ACSHAGL DKG +YF  M N YG+ P  EH+  + D LGRAG+
Sbjct: 364 ELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGE 423

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L+EA   I  M ++P  +VW  LL AC++HKN  LAE    K+++LEP + G +V+LSN+
Sbjct: 424 LDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNM 483

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           YS +   +    +R  MR++ +KKDP  S++E+K ++H+F+  DR+H     I   L+  
Sbjct: 484 YSASGRWNEAAHLRESMRKKGMKKDPACSWIEVKSKLHVFVAHDRSHPWYDRIIDALNAF 543

Query: 421 -ENLVQEHDGTKRSD--QKNSEEHLNDTEV-HSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
            E + +E       D  Q   EEH +     HSEKLAI FGII+T  GT+I VMKNLR+C
Sbjct: 544 SEQMAREGHVPNTEDVFQDIEEEHKSYVLCGHSEKLAIVFGIISTPAGTKIRVMKNLRVC 603

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DCH   K +SK+ DR+ +VRDA RFHHFK G CSC D+W
Sbjct: 604 IDCHTVTKFISKLADREIVVRDANRFHHFKDGNCSCGDFW 643



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 152/335 (45%), Gaps = 23/335 (6%)

Query: 30  EAVSLFGKMREQGVEINSV--TMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNC 87
           +AVSLF +MR      +SV  ++   L  C   G   LG   H + ++ G   D    N 
Sbjct: 31  DAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANA 90

Query: 88  LMTMYVK--CGSVDYG-----------------RKLFDQVPEKGLITWNAMISGYAQNGL 128
           L+ +Y K  C  +D                   RK+FD++ E+ +++WN ++ G A+ G 
Sbjct: 91  LLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCAEEGR 150

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
               L   R+M   G  PD+ T   VL   A       GLEV      NGF S+ F+ ++
Sbjct: 151 HHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSS 210

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           LI+MYA C     +  +FD +P +  + W +++ G   +G  E A+ +F  ML++G+RP 
Sbjct: 211 LIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPV 270

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
              F S++  C +      G +  +      G +      + ++D+  + G+++ A  + 
Sbjct: 271 PVTFSSLIPVCGNLASLRFGKQ-LHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIF 329

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
           + M   PD   W A++    +H     A + F ++
Sbjct: 330 DKM-SSPDVVSWTAMIMGYALHGPAREALVLFERM 363


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/517 (41%), Positives = 315/517 (60%), Gaps = 33/517 (6%)

Query: 14  CYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
            + A++SG+V N ++ EA  +F +M E+    N V+   ++      GY+          
Sbjct: 279 AWTAMVSGFVQNGMLDEATRIFEEMPEK----NEVSWNAMIA-----GYV------QSQQ 323

Query: 74  VKFGLDL-------DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQN 126
           ++   +L       + S  N ++T Y +CG++D  + LFD++P++  I+W AMISGYAQ+
Sbjct: 324 IEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQS 383

Query: 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
           G +   L L+ +MK  G   +       LSSCA + A  +G ++  ++   GF +     
Sbjct: 384 GQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAG 443

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           NAL+ MY +CG++++A  +F+ +  K +VSW  +I GY  HG G+ A+ LF+ M K  I+
Sbjct: 444 NALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIK 502

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           PD    V VLSACSH G  DKG+EYF  M   YG+    +HYTCM+DLLGRAG+L+EAL 
Sbjct: 503 PDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALN 562

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366
           L++SM   PD A WGALLGA +IH + EL E A  KV ++EP N+G YVLLSN+Y+ +  
Sbjct: 563 LMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGR 622

Query: 367 LDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE 426
              +  +R  MR++ +KK PGYS+VE++ + H+F VGD +H +   IY  L++L+ L  +
Sbjct: 623 WREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELD-LELK 681

Query: 427 HDGTKRSD-------QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDC 479
            DG   S        ++  +EH+   + HSEKLA+AFGI++  PG  I V+KNLR+C DC
Sbjct: 682 KDGFVSSTKLVLHDVEEEEKEHM--LKYHSEKLAVAFGILSIPPGRPIRVIKNLRVCEDC 739

Query: 480 HLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           H  IK +SKI  RQ IVRD+ RFHHF  G CSC DYW
Sbjct: 740 HNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/247 (33%), Positives = 129/247 (52%), Gaps = 5/247 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + + A+ISGY  +    EA+ LF KM+  G  +N   + C L  C +   L LG   H  
Sbjct: 371 ISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGR 430

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK G    +  GN L+ MY KCGS++    +F+ + EK +++WN MI+GYA++G     
Sbjct: 431 LVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEA 490

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN-GFGSNPFLNNALIN 191
           L L+  MK + + PD VT VGVLS+C+H G    G+E    +  N G  +N      +I+
Sbjct: 491 LALFESMK-MTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMID 549

Query: 192 MYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +  R G L +A  +   MP      +W A++G   IHG  E+  +  +++ +  + PD +
Sbjct: 550 LLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFE--MEPDNS 607

Query: 251 AFVSVLS 257
               +LS
Sbjct: 608 GMYVLLS 614



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 165/348 (47%), Gaps = 35/348 (10%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM--CCH 70
           V +N  IS Y+       A+S+F  MR +    ++VT   ++      GYL      C  
Sbjct: 61  VKWNRKISAYMRKGQCESALSVFNGMRRR----STVTYNAMIS-----GYLSNNKFDCAR 111

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
            +  K   D D    N +++ YVK G++   R LF+Q+PEK +++WNAM+SG+AQNG   
Sbjct: 112 KVFEKMP-DRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVE 170

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
              +++ +M    +  + +++ G+LS+    G     +E  +++  +         N L+
Sbjct: 171 EARKIFDQM----LVKNEISWNGLLSAYVQNGR----IEDARRLFDSKMDWEIVSWNCLM 222

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
             Y R   L  AR++FD MP +  +SW  +I GY  +G    A +LF+E+    IR D  
Sbjct: 223 GGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEEL---PIR-DVF 278

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
           A+ +++S     G+ D+    F  M  K  +      +  M+    ++ Q+ +A EL + 
Sbjct: 279 AWTAMVSGFVQNGMLDEATRIFEEMPEKNEVS-----WNAMIAGYVQSQQIEKARELFDQ 333

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKV-----IKLEPMNTGY 353
           M    + + W  ++       N++ A++ F ++     I    M +GY
Sbjct: 334 M-PSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGY 380



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 130/314 (41%), Gaps = 36/314 (11%)

Query: 78  LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYR 137
           +D D    N  ++ Y++ G  +    +F+ +  +  +T+NAMISGY  N       +++ 
Sbjct: 56  VDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFE 115

Query: 138 EMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQ------IQANGFGSNPFLN----- 186
           +M    +    V   G + +     A ++  ++ ++         +GF  N F+      
Sbjct: 116 KMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKI 175

Query: 187 ------------NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
                       N L++ Y + G ++ AR +FD      +VSW  ++GGY      + A 
Sbjct: 176 FDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDAR 235

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
            LFD M    +R D  ++  +++  +  GL  +    F  +  +         +T MV  
Sbjct: 236 SLFDRM---PVR-DKISWNIMITGYAQNGLLSEARRLFEELPIRDVFA-----WTAMVSG 286

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
             + G L+EA  + E M  E +   W A++      + +E A   F    ++   NT  +
Sbjct: 287 FVQNGMLDEATRIFEEM-PEKNEVSWNAMIAGYVQSQQIEKARELFD---QMPSRNTSSW 342

Query: 355 VLLSNIYSEARNLD 368
             +   Y++  N+D
Sbjct: 343 NTMVTGYAQCGNID 356



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 20/218 (9%)

Query: 108 VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVG 167
           + +  ++ WN  IS Y + G     L ++  M+            G LS+     A  V 
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVF 114

Query: 168 LEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH 227
            ++  +        +    N +++ Y + GNL  ARA+F+ MP K VVSW A++ G+  +
Sbjct: 115 EKMPDR--------DLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQN 166

Query: 228 GHGEVAVQLFDEML-KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPE 286
           G  E A ++FD+ML K+ I  +G     +LSA    G  +     F   K  + +     
Sbjct: 167 GFVEEARKIFDQMLVKNEISWNG-----LLSAYVQNGRIEDARRLF-DSKMDWEIVS--- 217

Query: 287 HYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
            + C++    R  +L++A  L + M V  D   W  ++
Sbjct: 218 -WNCLMGGYVRKKRLDDARSLFDRMPVR-DKISWNIMI 253


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/543 (39%), Positives = 317/543 (58%), Gaps = 39/543 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N +I+G+  + L SEAV +F  M  +G E +  T+  +LP   D   L +G+  H  
Sbjct: 216 ISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGY 275

Query: 73  CVKFGLDLDFSVGNCLMTMYVKC-------------------------------GSVDYG 101
            +K GL  D  V + L+ MY KC                               G V+  
Sbjct: 276 VIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESS 335

Query: 102 RKLFDQVPEKGL----ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
            +LF Q+ ++G+    ++W +MI+  +QNG     LEL+REM+  GV P++VT   +L +
Sbjct: 336 LRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPA 395

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
           C ++ A   G          G  ++ ++ +ALI+MYA+CG ++ +R  FDG+P K +V W
Sbjct: 396 CGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCW 455

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
            A+I GY +HG  + A+++FD M +SG +PD  +F  VLSACS +GLT++G  YF  M +
Sbjct: 456 NAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSS 515

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
           KYG++   EHY CMV LL RAG+L +A  +I  M V PD  VWGALL +C++H NV L E
Sbjct: 516 KYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGE 575

Query: 338 LAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRV 397
           +A  K+ +LEP N G Y+LLSNIY+     + + RVR MM+ + L+K+PG S++E+K +V
Sbjct: 576 VAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKV 635

Query: 398 HLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEV----HSEKLA 453
           H+ + GD++H Q  +I   LDKL   +++       +    +    D E     HSEKLA
Sbjct: 636 HMLLAGDKSHPQMTQIIEKLDKLSMEMKKLGYFPEINFVLQDVEEQDKEQILCGHSEKLA 695

Query: 454 IAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCK 513
           + FG++NT PG  + V+KNLRICGDCH+ IK +S    R+  VRD  RFHHFK G CSC 
Sbjct: 696 VVFGLLNTPPGYPLQVIKNLRICGDCHVVIKFISSFERREIFVRDTNRFHHFKEGACSCG 755

Query: 514 DYW 516
           DYW
Sbjct: 756 DYW 758



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 140/322 (43%), Gaps = 36/322 (11%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           ++ LI  +        A+S F +M  +G+  ++  +   +  C     L      H I  
Sbjct: 82  FSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIAS 141

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             G D D  V + L+ MY+KC  +    ++FD++ E  +++W+A+++ YA+ G       
Sbjct: 142 VSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKR 201

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHS----------------------------- 165
           L+ EM   GV P+ +++ G+++   H G +S                             
Sbjct: 202 LFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVG 261

Query: 166 ------VGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
                 +G+ +   +   G  S+  +++ALI+MY +C    +   +FD M    V S  A
Sbjct: 262 DLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNA 321

Query: 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279
            I G   +G  E +++LF ++   G+  +  ++ S+++ CS  G   + LE F  M+   
Sbjct: 322 FIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIA- 380

Query: 280 GLQPGPEHYTCMVDLLGRAGQL 301
           G++P      C++   G    L
Sbjct: 381 GVKPNSVTIPCLLPACGNIAAL 402



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 107/214 (50%), Gaps = 1/214 (0%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   +K GL  D  +   L++ Y           + D VPE  + +++ +I  +++    
Sbjct: 36  HAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQF 95

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
            H L  + +M + G+ PD       + +CA L A     +V      +GF S+ F+ ++L
Sbjct: 96  HHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSL 155

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++MY +C  ++ A  +FD M    VVSW+A++  Y   G  + A +LF EM  SG++P+ 
Sbjct: 156 VHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNL 215

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP 283
            ++  +++  +H+GL  + +  F  M  + G +P
Sbjct: 216 ISWNGMIAGFNHSGLYSEAVLMFLDMHLR-GFEP 248



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 4/176 (2%)

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
           +    I   G  ++  L   L++ YA       A  + D +P   V S++ +I  +    
Sbjct: 34  QAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFH 93

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD-KGLEYFYGMKNKYGLQPGPEH 287
               A+  F +ML  G+ PD     S + AC  AGL+  K     +G+ +  G       
Sbjct: 94  QFHHALSTFSQMLTRGLMPDNRVLPSAVKAC--AGLSALKPARQVHGIASVSGFDSDSFV 151

Query: 288 YTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
            + +V +  +  Q+ +A  + + M  EPD   W AL+ A      V+ A+  F ++
Sbjct: 152 QSSLVHMYIKCNQIRDAHRVFDRMF-EPDVVSWSALVAAYARQGCVDEAKRLFSEM 206


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/537 (38%), Positives = 317/537 (59%), Gaps = 39/537 (7%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           ++A+I  +V + L   A   + +M   GVE N+ T   +L  C     L  G   HC  +
Sbjct: 113 FSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS----LESGKVLHCQAI 168

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT------------------- 115
           K GL  D  V   L+ +Y + G V   R+LFD++PE+ L++                   
Sbjct: 169 KLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARS 228

Query: 116 ------------WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163
                       WN MI GYAQ+G+    L+L+R M      P+ VT + VLS+C  LGA
Sbjct: 229 LFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGA 288

Query: 164 HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGG 223
              G  +   I+  G   N  +  ALI+MY++CG+L+ AR +FD +  K VV+W ++I G
Sbjct: 289 LESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVG 348

Query: 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP 283
           Y +HG  + A+QLF+EM ++G +P    F+ +LSAC H GL ++G  +F  M++KYG++P
Sbjct: 349 YAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEP 408

Query: 284 GPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
             EHY CMV+LLGRAG L EA  L+++M +  D  +WG LLG C++H N++L E     +
Sbjct: 409 KIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFL 468

Query: 344 IKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVG 403
           +  +  N+G YVLLSN+Y+   N +G+ ++R +M+E  ++K+ G S +E+  +VH F+ G
Sbjct: 469 VDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFVAG 528

Query: 404 DRNHHQTVEIYRMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGII 459
           +R H ++ EIY ML+++ + ++    T ++D        E+     EVHSEKLAIAFG+I
Sbjct: 529 ERKHPKSKEIYVMLNEINSWLKARGYTPQTDVVLHDLREEQKEQSLEVHSEKLAIAFGLI 588

Query: 460 NTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +T PGT + ++KNLR+C DCH  +K++S+I  R+ ++RD  RFHHF+ G CSC DYW
Sbjct: 589 STKPGTTVKIVKNLRVCSDCHTVMKMISEITGRKIVMRDRNRFHHFEDGLCSCGDYW 645



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 126/233 (54%), Gaps = 8/233 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           VC+N +I GY  + + +E++ LF +M       N VT+L +L  C   G L  G   H  
Sbjct: 239 VCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSY 298

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               G+ ++  VG  L+ MY KCGS++  R +FD++ +K ++ WN+MI GYA +G + H 
Sbjct: 299 IENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHA 358

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           L+L+ EM   G  P  +TF+G+LS+C H G    G    + ++ + +G  P + +   ++
Sbjct: 359 LQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMR-DKYGIEPKIEHYGCMV 417

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
           N+  R G+L++A  +   M      V W  ++G   +H    V ++L +E+ K
Sbjct: 418 NLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLH----VNIKLGEEIAK 466



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 142/323 (43%), Gaps = 44/323 (13%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L   Y   G +D    +F+   E  + +++A+I  + Q+ L       Y +M S GV P+
Sbjct: 85  LQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPN 144

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGN--------- 198
           A TF  VL SC    +   G  +  Q    G GS+ ++   L+++YAR G+         
Sbjct: 145 AFTFSSVLKSC----SLESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFD 200

Query: 199 ----------------------LKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
                                 L KAR++F+GM  + VV W  +IGGY   G    +++L
Sbjct: 201 KMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKL 260

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           F  ML +   P+    ++VLSAC   G  + G      ++NK G+Q      T ++D+  
Sbjct: 261 FRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENK-GIQINVHVGTALIDMYS 319

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKL--EPMNTGYY 354
           + G L +A  L+   + + D   W +++    +H   + A   F ++ +   +P +  + 
Sbjct: 320 KCGSLEDA-RLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFI 378

Query: 355 VLLS-----NIYSEARNLDGIMR 372
            +LS      +  E R+   +MR
Sbjct: 379 GILSACGHGGLVEEGRSFFRLMR 401



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 69/162 (42%), Gaps = 25/162 (15%)

Query: 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS 216
           S AHL      L++   +   G   NP LN  L   YA  G L  +  +F+      V S
Sbjct: 59  SVAHL------LQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFS 112

Query: 217 WTAIIGGYGIHGHGEVAVQLFD-------EMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
           ++AII       H  V  +LFD       +ML  G+ P+   F SVL +CS     + G 
Sbjct: 113 FSAII-------HSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS----LESG- 160

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           +  +    K GL       T +VD+  R G +  A +L + M
Sbjct: 161 KVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKM 202


>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/518 (39%), Positives = 318/518 (61%), Gaps = 15/518 (2%)

Query: 12  TVCYNALISGYVLNS--LVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMC 68
           T  +N++I G+  +   L  +A+  +  M        ++ T   LL  C +      G C
Sbjct: 70  TPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEE--GKC 127

Query: 69  --CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQN 126
              H   ++FG D D  +   L+  Y   G ++   K+F+++P + L++WN+MIS Y Q 
Sbjct: 128 REVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQT 187

Query: 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
           GL    L++Y +M+   V  D  T V +LSSCAH+GA  +G+++ +         N F+ 
Sbjct: 188 GLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVG 247

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           NALI+MYA+CG+L  A +IF+ MP++ V +W ++I GYG+HG G+ A+  F  ML +G+R
Sbjct: 248 NALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVR 307

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           P+   F+ +L  CSH GL  +G++YF+ M +++ L+PG +HY CMVDL GRAG+L EALE
Sbjct: 308 PNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALE 367

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366
           +I S   + D  +W  LLG+CKIH+NVE+ E+A   +++L  +  G  VLLS IY+EA++
Sbjct: 368 VIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDCVLLSGIYAEAKD 427

Query: 367 LDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK------L 420
           L G+ R+R +++ R +K  PG+S++E+  +VH F+V D++H  + EIYR L++      L
Sbjct: 428 LQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSREIYRKLEEVIHRASL 487

Query: 421 ENLVQEHDGTKRSDQKNSEEHL--NDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGD 478
                E      + + N++E+     T  HSEKLAIA+G+  T  GT ++++KNLR+C D
Sbjct: 488 VGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPEGTSLLIVKNLRVCRD 547

Query: 479 CHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           CH F K VS   DR+ IVRD  RFHHFK G CSCK++W
Sbjct: 548 CHNFTKFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 585



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 140/311 (45%), Gaps = 13/311 (4%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQ--NGLATHVLELYREMKSLG-VCPDAVTFV 152
           GS+ Y + +F ++       WN+MI G++Q  + L    +  Y  M S     PD  TF 
Sbjct: 53  GSLAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFS 112

Query: 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK 212
            +L +C          EV   I   G+  +  L   LI  YA  G ++ A  +F+ MP +
Sbjct: 113 FLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPAR 172

Query: 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF 272
            +VSW ++I  Y   G  E A++++D+M  S +  DG   VS+LS+C+H G    G++  
Sbjct: 173 DLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQ-M 231

Query: 273 YGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKN 332
           +    +  L         ++D+  + G L  AL +  SM  + D   W +++    +H  
Sbjct: 232 HRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSM-PKRDVFTWNSMIVGYGVHGR 290

Query: 333 VELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSY 390
            + A   FG ++   + P +  +  LL     +    +G+    MM  E  LK  PG  +
Sbjct: 291 GDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLK--PGIKH 348

Query: 391 ----VELKGRV 397
               V+L GR 
Sbjct: 349 YGCMVDLFGRA 359


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/508 (41%), Positives = 304/508 (59%), Gaps = 38/508 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++++GY  N   ++A+ L  +M +  ++ ++ TM  LLP   +             
Sbjct: 204 VSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTN------------- 250

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
                                 C +V Y + +F ++ EK LI+WN MI+ Y  N +    
Sbjct: 251 --------------------TSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEA 290

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           ++LY +M+  GV PDAV+   VL +C  L A  +G  + + ++      N  L NALI+M
Sbjct: 291 VDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDM 350

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG LK+ARA+FD M  + VVSWT++I  YG+ G G+ AV LF +M  SG  PD  AF
Sbjct: 351 YAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAF 410

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           VSVL+ACSHAGL D+G  Y + +  +YG+ PG EHY CMVDLLGRAG+++EA  L   M 
Sbjct: 411 VSVLAACSHAGLVDEG-RYCFNLMAEYGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMP 469

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           +EP+  VWG+LL AC+++ ++ +A LA   + +L P  +GYYVLLSNIY++A     +  
Sbjct: 470 MEPNERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQSGYYVLLSNIYAKAGRWQDVET 529

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR +M  + +KK PG S VE+   V+ F+ GD++H Q+ EIY+ L  L   ++E      
Sbjct: 530 VRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSHTQSKEIYKALGVLVGRMKELGYMPE 589

Query: 433 SDQKNSEEHLNDTE----VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
           +D    +    D E    VHSEKLAI F I+NT PG+ I + KN+R+CGDCH+  KL+SK
Sbjct: 590 TDSALHDVEEEDKECHLAVHSEKLAIVFAILNTKPGSTIRITKNIRVCGDCHVATKLISK 649

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           I +R+ I+RD  RFHHF+ G CSC DYW
Sbjct: 650 IAEREIIIRDTHRFHHFRDGVCSCGDYW 677



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 144/304 (47%), Gaps = 22/304 (7%)

Query: 51  LCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE 110
           LC   + V+P    L      I +   L  + S+G  LM  Y  CG   Y R +FD++ +
Sbjct: 40  LCNKILDVNPDAKTLKKLHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITD 99

Query: 111 KGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEV 170
           K ++ +N MI  Y  NGL    L +++ M + G  PD  T+  VL +C+  G   VGL++
Sbjct: 100 KNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQI 159

Query: 171 EQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHG 230
              +   G   N ++ N L++MY +C  L  AR + D MP + +VSW +++ GY  +G  
Sbjct: 160 HGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRF 219

Query: 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL---EYFYGMKNKYGLQPGPEH 287
             A++L  EM    ++PD     S+L A ++    D  L   + F  +K K  +      
Sbjct: 220 NDALKLCREMEDLKLKPDAGTMGSLLPAVTNTS-CDNVLYVKDMFVKLKEKSLIS----- 273

Query: 288 YTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGAC----------KIHKNVE 334
           +  M+ +       NEA++L   M    VEPD     ++L AC          +IH+ VE
Sbjct: 274 WNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVE 333

Query: 335 LAEL 338
             +L
Sbjct: 334 RKKL 337


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/524 (40%), Positives = 313/524 (59%), Gaps = 20/524 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+I+GY       EA++LF +M   G   N VT++ +L  C   G    G   H  
Sbjct: 374 VTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAY 433

Query: 73  CVKF----------GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP--EKGLITWNAMI 120
            +K           G D D  V N L+ MY KC S    R +FD +P  E+ ++TW  MI
Sbjct: 434 SLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMI 493

Query: 121 SGYAQNGLATHVLELYREMKS--LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI-QAN 177
            G+AQ G +   L+L+ EM S   GV P+A T   +L +CAHL A  +G ++   + + +
Sbjct: 494 GGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHH 553

Query: 178 GFGSNP-FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
            + S+  F+ N LI+MY++CG++  AR +FD M +K+ +SWT+++ GYG+HG G  A+ +
Sbjct: 554 RYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDI 613

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           FD+M K+G  PD   F+ VL ACSH G+ D+GL YF  M   YGL P  EHY C +DLL 
Sbjct: 614 FDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLA 673

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356
           R+G+L++A   ++ M +EP   VW ALL AC++H NVELAE A  K++++   N G Y L
Sbjct: 674 RSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTL 733

Query: 357 LSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRM 416
           +SNIY+ A     + R+R +M++  +KK PG S+V+ +     F VGDR+H  + +IY +
Sbjct: 734 ISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYAL 793

Query: 417 LDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKN 472
           L+ L + ++       ++      + EE  N    HSEKLA+A+G++ TSPG  I + KN
Sbjct: 794 LESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRITKN 853

Query: 473 LRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           LR+CGDCH     +SKIVD + +VRD +RFHHFK+G CSC  YW
Sbjct: 854 LRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 897



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/416 (26%), Positives = 190/416 (45%), Gaps = 60/416 (14%)

Query: 1   VFDE-SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM------REQGVEINSVTMLCL 53
           +FDE + +     + +N+++S +V +S    A+ LF KM      +      + ++++ +
Sbjct: 219 IFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNI 278

Query: 54  LPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL 113
           LP C     +      H   ++ G   D  VGN L+  Y KCG ++   K+F+ +  K +
Sbjct: 279 LPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDV 338

Query: 114 ITWNAM-----------------------------------ISGYAQNGLATHVLELYRE 138
           ++WNAM                                   I+GY+Q G +   L L+R+
Sbjct: 339 VSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQ 398

Query: 139 MKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN----------GFGSNPFLNNA 188
           M   G  P+ VT + VLS+CA LGA S G E+      N          G   +  + NA
Sbjct: 399 MIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNA 458

Query: 189 LINMYARCGNLKKARAIFDGMP--RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS--G 244
           LI+MY++C + K AR+IFD +P   + VV+WT +IGG+  +G    A++LF EM+    G
Sbjct: 459 LIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYG 518

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
           + P+      +L AC+H      G + + Y +++            C++D+  + G ++ 
Sbjct: 519 VAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDT 578

Query: 304 ALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLL 357
           A  + +SM  +     W +++    +H     A   F K+ K    P +  + V+L
Sbjct: 579 ARHVFDSM-SQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVL 633



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 135/273 (49%), Gaps = 9/273 (3%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +N LI  ++    +  A+++  +M   G   +  T+  +L  C +      G   H 
Sbjct: 127 AVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHG 186

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL---ITWNAMISGYAQNGL 128
           +    G + +  + N L+ MY +CGS++    +FD++ ++G+   I+WN+++S + ++  
Sbjct: 187 LICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSN 246

Query: 129 ATHVLELYREM------KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN 182
           A   L+L+ +M      K      D ++ V +L +C  L A     EV      NG   +
Sbjct: 247 AWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPD 306

Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
            F+ NALI+ YA+CG ++ A  +F+ M  K VVSW A++ GY   G+ E A +LF  M K
Sbjct: 307 VFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRK 366

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
             I  D   + +V++  S  G + + L  F  M
Sbjct: 367 ENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM 399



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 124/272 (45%), Gaps = 11/272 (4%)

Query: 83  SVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL 142
           S+G  ++  Y+ CG+ DY   + ++V     + WN +I  + + G     + +   M   
Sbjct: 97  SLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRA 156

Query: 143 GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202
           G  PD  T   VL +C  L ++  G      I  NGF SN F+ NAL+ MY+RCG+L++A
Sbjct: 157 GTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 216

Query: 203 RAIFDGMPRK---TVVSWTAIIGGYGIHGHGEVAVQLFDEML------KSGIRPDGTAFV 253
             IFD + ++    V+SW +I+  +    +   A+ LF +M        +  R D  + V
Sbjct: 217 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 276

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           ++L AC       +  E  +G   + G  P       ++D   + G +  A+++  +M+ 
Sbjct: 277 NILPACGSLKAVPQTKE-VHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVF-NMME 334

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIK 345
             D   W A++       N E A   F  + K
Sbjct: 335 FKDVVSWNAMVAGYSQSGNFEAAFELFKNMRK 366


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/520 (40%), Positives = 307/520 (59%), Gaps = 6/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD   K++   + + A+I+ Y+  + ++E V LF KM  +G+  N +TML L+  C   
Sbjct: 284 VFDGLSKAS--IISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTA 341

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L LG   H   ++ G  L   +    + MY KCG V   R +FD    K L+ W+AMI
Sbjct: 342 GALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMI 401

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           S YAQN       +++  M   G+ P+  T V +L  CA  G+  +G  +   I   G  
Sbjct: 402 SSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIK 461

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            +  L  + ++MYA CG++  A  +F     + +  W A+I G+ +HGHGE A++LF+EM
Sbjct: 462 GDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEM 521

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
              G+ P+   F+  L ACSH+GL  +G   F+ M +++G  P  EHY CMVDLLGRAG 
Sbjct: 522 EALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGL 581

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L+EA ELI+SM + P+ AV+G+ L ACK+HKN++L E A  + + LEP  +GY VL+SNI
Sbjct: 582 LDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNI 641

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD-- 418
           Y+ A     +  +R  M++  + K+PG S +E+ G +H F++GDR H    ++Y M+D  
Sbjct: 642 YASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIMGDREHPDAKKVYEMIDEM 701

Query: 419 --KLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
             KLE+     D +      + E+ ++    HSEKLA+A+G+I+T+PG  I ++KNLR+C
Sbjct: 702 REKLEDAGYTPDVSCVLHNIDKEKKVSALNYHSEKLAMAYGLISTAPGVPIRIVKNLRVC 761

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DCH   KL+SKI  R+ IVRD  RFHHFK G CSC DYW
Sbjct: 762 DDCHNATKLLSKIYGREIIVRDRNRFHHFKEGSCSCCDYW 801



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 162/316 (51%), Gaps = 8/316 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPIC-VDPGYLWLGMCCHCIC 73
           ++ LI+ Y+ N+  ++A  ++  MR    E+++  +  +L  C + P +L LG   H   
Sbjct: 92  HSFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFL-LGQEVHGFV 150

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           VK G   D  V N L+ MY + GS+   R LFD++  K +++W+ MI  Y ++GL    L
Sbjct: 151 VKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEAL 210

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF--GSNPFLNNALIN 191
           +L R+M  + V P  +  + +    A L    +G  +   +  NG    S   L  ALI+
Sbjct: 211 DLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALID 270

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY +C NL  AR +FDG+ + +++SWTA+I  Y    +    V+LF +ML  G+ P+   
Sbjct: 271 MYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEIT 330

Query: 252 FVSVLSACSHAGLTDKG-LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            +S++  C  AG  + G L + + ++N + L       T  +D+ G+ G +  A  + +S
Sbjct: 331 MLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLA--TAFIDMYGKCGDVRSARSVFDS 388

Query: 311 MLVEPDGAVWGALLGA 326
                D  +W A++ +
Sbjct: 389 -FKSKDLMMWSAMISS 403



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 160/326 (49%), Gaps = 4/326 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++ +I  Y  + L+ EA+ L   M    V+ + + M+ +  +  +   L LG   H  
Sbjct: 191 VSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAY 250

Query: 73  CVKFGLDLDFSVGNC--LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
            ++ G      V  C  L+ MYVKC ++ Y R++FD + +  +I+W AMI+ Y       
Sbjct: 251 VMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLN 310

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             + L+ +M   G+ P+ +T + ++  C   GA  +G  +      NGF  +  L  A I
Sbjct: 311 EGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFI 370

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MY +CG+++ AR++FD    K ++ W+A+I  Y  +   + A  +F  M   GIRP+  
Sbjct: 371 DMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNER 430

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
             VS+L  C+ AG  + G ++ +   +K G++      T  VD+    G ++ A  L   
Sbjct: 431 TMVSLLMICAKAGSLEMG-KWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAE 489

Query: 311 MLVEPDGAVWGALLGACKIHKNVELA 336
              + D ++W A++    +H + E A
Sbjct: 490 A-TDRDISMWNAMISGFAMHGHGEAA 514


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/538 (39%), Positives = 310/538 (57%), Gaps = 36/538 (6%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           YNALI G   +     +   + K    G+  +++T   L+  C       +GM  H   +
Sbjct: 85  YNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTHGQAI 144

Query: 75  KFGLDLDFSVGNCLMTMYV-------------------------------KCGSVDYGRK 103
           K G + DF V N L+ MY                                +CG     R+
Sbjct: 145 KHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARE 204

Query: 104 LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163
           LFD++PE+ L+TW+ MISGYA+N      +E +  +++ GV  +    VGV+SSCAHLGA
Sbjct: 205 LFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGA 264

Query: 164 HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGG 223
            ++G +  + +  N    N  L  A+++MYARCGN++KA  +F+ +P K V+ WTA+I G
Sbjct: 265 LAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAG 324

Query: 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP 283
             +HG+ E A+  F EM K G  P    F +VL+ACSHAG+ ++GLE F  MK  +G++P
Sbjct: 325 LAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEP 384

Query: 284 GPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
             EHY CMVDLLGRAG+L +A + +  M V+P+  +W ALLGAC+IHKNVE+ E     +
Sbjct: 385 RLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKIL 444

Query: 344 IKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVG 403
           ++++P  +G+YVLLSNIY+ A     +  +R MM+++ ++K PGYS +E+ G+VH F +G
Sbjct: 445 LEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVHEFTIG 504

Query: 404 DRNHHQTVEIYR-----MLDKLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGI 458
           D+ H +  +I R     +L K++      +  +     + EE       HSEKLAIA+GI
Sbjct: 505 DKTHPEIEKIERIWEDIILPKIKLAGYVGNTAETMFDIDEEEKEGALHRHSEKLAIAYGI 564

Query: 459 INTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +     T I ++KNLR+C DCH   KL+SK+ + + IVRD  RFHHFK G CSC DYW
Sbjct: 565 MKIRAPTPIRIVKNLRVCEDCHTATKLISKVFEVELIVRDRNRFHHFKEGTCSCMDYW 622



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 142/284 (50%), Gaps = 6/284 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++ +ISGY  N+   +AV  F  ++ +GV  N   M+ ++  C   G L +G   H  
Sbjct: 215 VTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEY 274

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++  L L+  +G  ++ MY +CG+V+    +F+Q+PEK ++ W A+I+G A +G A   
Sbjct: 275 VMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKA 334

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           L  + EM   G  P  +TF  VL++C+H G    GLE+ + ++ +  G  P L +   ++
Sbjct: 335 LWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRD-HGVEPRLEHYGCMV 393

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++  R G L+KA      MP K     W A++G   IH + EV  ++   +L+  ++P+ 
Sbjct: 394 DLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKILLE--MQPEY 451

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293
           +    +LS         K +     M    G++  P +    +D
Sbjct: 452 SGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEID 495



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 131/295 (44%), Gaps = 41/295 (13%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           Y  ++  Q+    L  +NA+I G + +    +    Y +    G+ PD +T   ++ +CA
Sbjct: 69  YAIRVASQIQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACA 128

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
            L    +G++   Q   +GF  + ++ N+L++MYA  G++  AR++F  M R  VVSWT 
Sbjct: 129 QLENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTC 188

Query: 220 IIGGYGIHGHGEVAVQLFDEMLK-------------------------------SGIRPD 248
           +I GY   G  + A +LFD M +                                G+  +
Sbjct: 189 MIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVAN 248

Query: 249 GTAFVSVLSACSHAG---LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
            T  V V+S+C+H G   + +K  EY    K    L  G    T +VD+  R G + +A+
Sbjct: 249 ETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILG----TAVVDMYARCGNVEKAV 304

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
            + E  L E D   W AL+    +H   E A   F ++ K    P +  +  +L+
Sbjct: 305 MVFEQ-LPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLT 358


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/521 (42%), Positives = 313/521 (60%), Gaps = 7/521 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGV-EINSVTMLCLLPICVD 59
           VFD       +T  ++ALI G+VL S +++A  LF  M  QG+  ++  ++   L  C  
Sbjct: 295 VFDAMPARNEVT--WSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACAS 352

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
             +L +G   H +  K G+  D + GN L++MY K G +D    LFD++  K  ++++A+
Sbjct: 353 LDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSAL 412

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           +SGY QNG A     ++++M++  V PDA T V ++ +C+HL A   G      +   G 
Sbjct: 413 VSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGL 472

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            S   + NALI+MYA+CG +  +R +F+ MP + +VSW  +I GYGIHG G+ A  LF E
Sbjct: 473 ASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLE 532

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M   G  PDG  F+ +LSACSH+GL  +G  +F+ M + YGL P  EHY CMVDLL R G
Sbjct: 533 MNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGG 592

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
            L+EA E I+SM +  D  VW ALLGAC+++KN++L +     + +L P  TG +VLLSN
Sbjct: 593 FLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSN 652

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
           IYS A   D    VR++ + +  KK PG S++E+ G +H F+ GD++H Q+ EIYR LD 
Sbjct: 653 IYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDN 712

Query: 420 ----LENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRI 475
               ++ L  + D +        EE       HSEKLAIA+GI++ S    I V KNLR+
Sbjct: 713 ILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRV 772

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           CGDCH  IK +S +  R  IVRDA RFHHFK+G CSC D+W
Sbjct: 773 CGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 164/331 (49%), Gaps = 15/331 (4%)

Query: 13  VCYNALISGYVLNSLVSEAVS--LFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
           V +NA+++GY  + +   AV+  L  +M+   +  N+ T++ LLP+    G L  G   H
Sbjct: 192 VAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVH 251

Query: 71  CICVKFGLDLDFS----------VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             C++  L  + +          +G  L+ MY KCGS+ Y R++FD +P +  +TW+A+I
Sbjct: 252 AYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALI 311

Query: 121 SGYAQNGLATHVLELYREMKSLGVC-PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
            G+      T    L++ M + G+C     +    L +CA L    +G ++   +  +G 
Sbjct: 312 GGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGV 371

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            ++    N+L++MYA+ G + +A A+FD M  K  VS++A++ GY  +G  E A  +F +
Sbjct: 372 HADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKK 431

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M    + PD    VS++ ACSH      G    +G     GL         ++D+  + G
Sbjct: 432 MQACNVEPDAATMVSLIPACSHLAALQHG-RCSHGSVIIRGLASETSICNALIDMYAKCG 490

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIH 330
           +++ + ++  +M+   D   W  ++    IH
Sbjct: 491 RIDLSRQVF-NMMPSRDIVSWNTMIAGYGIH 520



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 120/427 (28%), Positives = 179/427 (41%), Gaps = 73/427 (17%)

Query: 15  YNALISGYVLNSLVSEA--VSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           YN LI  Y  +S  + A  + L+ +M    V  N+ T    L  C        G   H  
Sbjct: 91  YNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKACSALADHHCGRAIHRH 150

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL---- 128
            +  GL  D  V   L+ MYVKC  +     +F  +P + L+ WNAM++GYA +G+    
Sbjct: 151 AIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHA 210

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVE----------QQIQANG 178
             H+L +  +M  L   P+A T V +L   A  GA + G  V            +   + 
Sbjct: 211 VAHLLSMQMQMHRLR--PNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSK 268

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
                 L  AL++MYA+CG+L  AR +FD MP +  V+W+A+IGG+ +      A  LF 
Sbjct: 269 LTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFK 328

Query: 239 EML------------------------------------KSGIRPDGTAFVSVLSACSHA 262
            ML                                    KSG+  D TA  S+LS  + A
Sbjct: 329 AMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKA 388

Query: 263 GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML---VEPDGAV 319
           GL D+ +  F  M  K  +      Y+ +V    + G+  EA  + + M    VEPD A 
Sbjct: 389 GLIDQAIALFDEMAVKDTVS-----YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAAT 443

Query: 320 WGALLGACKIHKNVELAELAFGK------VIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
             +L+ AC       LA L  G+      +I+     T     L ++Y++   +D   +V
Sbjct: 444 MVSLIPACS-----HLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQV 498

Query: 374 RMMMRER 380
             MM  R
Sbjct: 499 FNMMPSR 505



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 124/266 (46%), Gaps = 14/266 (5%)

Query: 92  YVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG--LATHVLELYREMKSLGVCPDAV 149
           ++  G +     LFDQ+P   + T+N +I  Y+ +    A   L LYR M    V P+  
Sbjct: 67  HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNY 126

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
           TF   L +C+ L  H  G  + +     G  ++ F++ AL++MY +C  L  A  IF  M
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 186

Query: 210 PRKTVVSWTAIIGGYGIHG--HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
           P + +V+W A++ GY  HG  H  VA  L  +M    +RP+ +  V++L   +  G   +
Sbjct: 187 PARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQ 246

Query: 268 GLE-YFYGMK--------NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGA 318
           G   + Y ++        +K  L  G    T ++D+  + G L  A  + ++M    +  
Sbjct: 247 GTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR-NEV 305

Query: 319 VWGALLGACKIHKNVELAELAFGKVI 344
            W AL+G   +   +  A L F  ++
Sbjct: 306 TWSALIGGFVLCSRMTQAFLLFKAML 331


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/537 (39%), Positives = 313/537 (58%), Gaps = 39/537 (7%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V +  LI G++     SE+V LF +MR + + ++   +  L+  C +   + LG   H 
Sbjct: 357 SVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHS 416

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGS-------------------------------VDY 100
           +C+K G      V N L++MY KCG+                               +  
Sbjct: 417 LCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAK 476

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM-KSLGVCPDAVTFVGVLSSCA 159
            R+ FD +  + +ITWNAM+  Y Q+G     L++Y +M     V PD VT+V +   CA
Sbjct: 477 AREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCA 536

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
            +GA+ +G ++       G   +  + NA+I MY++CG + +AR  FD + RK +VSW A
Sbjct: 537 DIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNA 596

Query: 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279
           +I GY  HG G+ A+++FD++L  G +PD  ++V+VLS CSH+GL ++G  YF  MK  +
Sbjct: 597 MITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDH 656

Query: 280 GLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELA 339
            + PG EH++CMVDLLGRAG L EA  LI+ M ++P   VWGALL ACK H N +LAELA
Sbjct: 657 NISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAELA 716

Query: 340 FGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHL 399
              +  L+   +G Y+LL+ +Y++A   D   +VR +MR++ +KK PGYS++E+  RVH+
Sbjct: 717 AKHLFDLDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGIKKSPGYSWMEVNNRVHV 776

Query: 400 FMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGII 459
           F   D +H Q + I   LD+L   +  H G  R++   SE H      HSEKLA+AFGI+
Sbjct: 777 FKAEDVSHPQVIAIREKLDELMEKIA-HLGYVRTESPRSEIH------HSEKLAVAFGIM 829

Query: 460 NTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +      I +MKNLRIC DCH  IKL+S + DR+F++RD  RFHHFK G CSC DYW
Sbjct: 830 SLPAWMPIHIMKNLRICDDCHTVIKLISTVTDREFVIRDGVRFHHFKGGSCSCMDYW 886



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 167/364 (45%), Gaps = 34/364 (9%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEI-NSVTMLCLLPICVDPGYLWLGM 67
           T     +N ++SGY  +     A+ +F  MR+ G  + N+ T  C++  C   G+  + +
Sbjct: 120 TRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVAL 179

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV------------------- 108
               +  KF    D  V   L+ M V+CG++D+  K F ++                   
Sbjct: 180 QLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSH 239

Query: 109 ------------PEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS 156
                       PE+ +++WN +IS  +++G     L++  +M   GV PD+ T+   L+
Sbjct: 240 GVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLT 299

Query: 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS 216
           +CA L +   G ++  Q+  N    +P++ +A++ +YA+CG  K+A+ +F  +  +  VS
Sbjct: 300 ACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVS 359

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
           WT +IGG+  +G    +V+LF++M    +  D  A  +++S C +      G +  + + 
Sbjct: 360 WTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQ-LHSLC 418

Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELA 336
            K G          ++ +  + G L  A ELI + + E D   W  ++ A     N+  A
Sbjct: 419 LKSGHTRAVVVSNSLISMYAKCGNLQNA-ELIFNFMAERDIVSWTGMITAYSQVGNIAKA 477

Query: 337 ELAF 340
              F
Sbjct: 478 REFF 481



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/423 (22%), Positives = 179/423 (42%), Gaps = 42/423 (9%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +IS    +  V EA+ +   M  +GV  +S T    L  C     L  G   H  
Sbjct: 257 VSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQ 316

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++    +D  V + ++ +Y KCG     +++F  + ++  ++W  +I G+ Q G  +  
Sbjct: 317 VIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSES 376

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           +EL+ +M++  +  D      ++S C +     +G ++      +G      ++N+LI+M
Sbjct: 377 VELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISM 436

Query: 193 YARCGNLK-------------------------------KARAIFDGMPRKTVVSWTAII 221
           YA+CGNL+                               KAR  FD M  + V++W A++
Sbjct: 437 YAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAML 496

Query: 222 GGYGIHGHGEVAVQLFDEML-KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           G Y  HG  E  ++++ +ML +  + PD   +V++   C+  G    G +   G   K G
Sbjct: 497 GAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLG-DQIIGHTVKVG 555

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           L         ++ +  + G+++EA +  +  L   D   W A++     H   + A   F
Sbjct: 556 LILDTSVVNAVITMYSKCGRISEARKAFD-FLSRKDLVSWNAMITGYSQHGMGKQAIEIF 614

Query: 341 GKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSY----VELK 394
             ++    +P    Y  +LS         +G     MM R+  +   PG  +    V+L 
Sbjct: 615 DDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNIS--PGLEHFSCMVDLL 672

Query: 395 GRV 397
           GR 
Sbjct: 673 GRA 675



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 122/273 (44%), Gaps = 36/273 (13%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG-V 144
           N +M  Y K GS+    +LF ++P + + +WN ++SGY Q+G   + L+++  M+  G  
Sbjct: 96  NIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDS 155

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNL----- 199
            P+A TF  V+ SC  LG H V L++   +       +P +  AL++M  RCG +     
Sbjct: 156 LPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASK 215

Query: 200 --------------------------KKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVA 233
                                       A  IF  MP + VVSW  +I      G    A
Sbjct: 216 QFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREA 275

Query: 234 VQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMV 292
           + +  +M   G+RPD T + S L+AC+     + G + +   ++N   + P     + MV
Sbjct: 276 LDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVA--SAMV 333

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           +L  + G   EA  +  S L + +   W  L+G
Sbjct: 334 ELYAKCGCFKEAKRVFSS-LRDRNSVSWTVLIG 365



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 2/124 (1%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           N   +N ++N YA+ G+L  A  +F  MP + V SW  I+ GY   G    A+ +F  M 
Sbjct: 91  NVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMR 150

Query: 242 KSGIR-PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           ++G   P+   F  V+ +C   G  +  L+   G+ +K+  Q  P+  T +VD+L R G 
Sbjct: 151 QTGDSLPNAFTFGCVMKSCGALGWHEVALQ-LLGLLSKFDSQDDPDVQTALVDMLVRCGA 209

Query: 301 LNEA 304
           ++ A
Sbjct: 210 MDFA 213


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/541 (40%), Positives = 321/541 (59%), Gaps = 39/541 (7%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           + ALI GY L     E+V L+  MR QG+   S T   LL  C     + LG   H   +
Sbjct: 107 WTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTI 166

Query: 75  KFG-LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQ-------------------------- 107
             G    D  VGN L+ MYVKCG +  G ++FD+                          
Sbjct: 167 LIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAAS 226

Query: 108 -----VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162
                +P K ++ W AM++GYAQN      LE++  M++ GV  D VT VGV+S+CA LG
Sbjct: 227 ELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLG 286

Query: 163 AHSVGLEVEQQIQANGFG--SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           A      V    + +GFG  SN  + +ALI+MYA+CG+++ A  +F+ M  + V S++++
Sbjct: 287 AAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSM 346

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           I G+ +HG    A++LFDEMLK+ I+P+   F+ VL+ACSHAG+ ++G + F  M+  +G
Sbjct: 347 IVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHG 406

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           + P  +HY CMVDLLGRAG+L EAL L++ M + P G VWGALLGAC+IH N ++A++A 
Sbjct: 407 VAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAA 466

Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVE-LKGRVHL 399
             + +LEP   G Y+LLSNIY+ A   D + +VR +MR + LKK+PG S+VE  KG +H 
Sbjct: 467 SHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKKGIIHE 526

Query: 400 FMVGDRNHHQTVEIYR----MLDKLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIA 455
           F  GD +H ++ EI +    +LD+L+ L  + + +  +   + EE       HSEKLA+A
Sbjct: 527 FFAGDMSHPKSREIKQALEDLLDRLKYLGYQPNLSSVAYDISDEEKKRLLMSHSEKLALA 586

Query: 456 FGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDY 515
           FG++ T+ G  I ++KNLRIC DCH  +   S+I  R+ +VRD  RFHHF+ G CSC ++
Sbjct: 587 FGLLTTNAGCTIRIVKNLRICEDCHSVMCGASQITGREIVVRDNMRFHHFRDGRCSCGNF 646

Query: 516 W 516
           W
Sbjct: 647 W 647



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 125/225 (55%), Gaps = 4/225 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+++GY  N+   EA+ +F +M+  GV+ + VT++ ++  C   G          +
Sbjct: 238 VAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDV 297

Query: 73  CVK--FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
             +  FG   +  VG+ L+ MY KCGSV+   K+F+++ E+ + ++++MI G+A +GLA 
Sbjct: 298 AEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAG 357

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI-QANGFGSNPFLNNAL 189
             +EL+ EM    + P+ VTF+GVL++C+H G    G ++   + + +G   +      +
Sbjct: 358 AAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACM 417

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVA 233
           +++  R G L++A  +   MP       W A++G   IHG+ ++A
Sbjct: 418 VDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMA 462



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 115/246 (46%), Gaps = 35/246 (14%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           Y R +F QV       W A+I GYA  G     + LY  M+  G+ P + TF  +L +C+
Sbjct: 91  YPRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACS 150

Query: 160 HLGAHSVGLEVE-QQIQANGFGSNPFLNNALINMYARC---------------------- 196
                ++G +V  Q I   GFGS+ ++ N LI+MY +C                      
Sbjct: 151 AALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWT 210

Query: 197 ---------GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
                    GN++ A  +FDG+P K +V+WTA++ GY  +     A+++F+ M  +G++ 
Sbjct: 211 SLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKT 270

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY--TCMVDLLGRAGQLNEAL 305
           D    V V+SAC+  G   K   +   +  + G  P       + ++D+  + G + +A 
Sbjct: 271 DEVTLVGVISACAQLGAA-KYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAY 329

Query: 306 ELIESM 311
           ++ E M
Sbjct: 330 KVFERM 335


>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
           [Vitis vinifera]
          Length = 603

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/518 (39%), Positives = 318/518 (61%), Gaps = 15/518 (2%)

Query: 12  TVCYNALISGYVLNS--LVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMC 68
           T  +N++I G+  +   L  +A+  +  M        ++ T   LL  C +      G C
Sbjct: 88  TPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEE--GKC 145

Query: 69  --CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQN 126
              H   ++FG D D  +   L+  Y   G ++   K+F+++P + L++WN+MIS Y Q 
Sbjct: 146 REVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQT 205

Query: 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
           GL    L++Y +M+   V  D  T V +LSSCAH+GA  +G+++ +         N F+ 
Sbjct: 206 GLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVG 265

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           NALI+MYA+CG+L  A +IF+ MP++ V +W ++I GYG+HG G+ A+  F  ML +G+R
Sbjct: 266 NALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVR 325

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           P+   F+ +L  CSH GL  +G++YF+ M +++ L+PG +HY CMVDL GRAG+L EALE
Sbjct: 326 PNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALE 385

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366
           +I S   + D  +W  LLG+CKIH+NVE+ E+A   +++L  +  G  VLLS IY+EA++
Sbjct: 386 VIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDCVLLSGIYAEAKD 445

Query: 367 LDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK------L 420
           L G+ R+R +++ R +K  PG+S++E+  +VH F+V D++H  + EIYR L++      L
Sbjct: 446 LQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSREIYRKLEEVIHRASL 505

Query: 421 ENLVQEHDGTKRSDQKNSEEHL--NDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGD 478
                E      + + N++E+     T  HSEKLAIA+G+  T  GT ++++KNLR+C D
Sbjct: 506 VGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPEGTSLLIVKNLRVCRD 565

Query: 479 CHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           CH F K VS   DR+ IVRD  RFHHFK G CSCK++W
Sbjct: 566 CHNFTKFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 603



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 140/311 (45%), Gaps = 13/311 (4%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQ--NGLATHVLELYREMKSLG-VCPDAVTFV 152
           GS+ Y + +F ++       WN+MI G++Q  + L    +  Y  M S     PD  TF 
Sbjct: 71  GSLAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFS 130

Query: 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK 212
            +L +C          EV   I   G+  +  L   LI  YA  G ++ A  +F+ MP +
Sbjct: 131 FLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPAR 190

Query: 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF 272
            +VSW ++I  Y   G  E A++++D+M  S +  DG   VS+LS+C+H G    G++  
Sbjct: 191 DLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQ-M 249

Query: 273 YGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKN 332
           +    +  L         ++D+  + G L  AL +  SM  + D   W +++    +H  
Sbjct: 250 HRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSM-PKRDVFTWNSMIVGYGVHGR 308

Query: 333 VELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSY 390
            + A   FG ++   + P +  +  LL     +    +G+    MM  E  LK  PG  +
Sbjct: 309 GDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLK--PGIKH 366

Query: 391 ----VELKGRV 397
               V+L GR 
Sbjct: 367 YGCMVDLFGRA 377


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/524 (40%), Positives = 313/524 (59%), Gaps = 20/524 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+I+GY       EA++LF +M   G   N VT++ +L  C   G    G   H  
Sbjct: 367 VTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAY 426

Query: 73  CVKF----------GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP--EKGLITWNAMI 120
            +K           G D D  V N L+ MY KC S    R +FD +P  E+ ++TW  MI
Sbjct: 427 SLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMI 486

Query: 121 SGYAQNGLATHVLELYREMKS--LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI-QAN 177
            G+AQ G +   L+L+ EM S   GV P+A T   +L +CAHL A  +G ++   + + +
Sbjct: 487 GGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHH 546

Query: 178 GFGSNP-FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
            + S+  F+ N LI+MY++CG++  AR +FD M +K+ +SWT+++ GYG+HG G  A+ +
Sbjct: 547 RYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDI 606

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           FD+M K+G  PD   F+ VL ACSH G+ D+GL YF  M   YGL P  EHY C +DLL 
Sbjct: 607 FDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLA 666

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356
           R+G+L++A   ++ M +EP   VW ALL AC++H NVELAE A  K++++   N G Y L
Sbjct: 667 RSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTL 726

Query: 357 LSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRM 416
           +SNIY+ A     + R+R +M++  +KK PG S+V+ +     F VGDR+H  + +IY +
Sbjct: 727 ISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYAL 786

Query: 417 LDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKN 472
           L+ L + ++       ++      + EE  N    HSEKLA+A+G++ TSPG  I + KN
Sbjct: 787 LESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRITKN 846

Query: 473 LRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           LR+CGDCH     +SKIVD + +VRD +RFHHFK+G CSC  YW
Sbjct: 847 LRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 890



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 109/416 (26%), Positives = 190/416 (45%), Gaps = 60/416 (14%)

Query: 1   VFDE-SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM------REQGVEINSVTMLCL 53
           +FDE + +     + +N+++S +V +S    A+ LF KM      +      + ++++ +
Sbjct: 212 IFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNI 271

Query: 54  LPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL 113
           LP C     +      H   ++ G   D  VGN L+  Y KCG ++   K+F+ +  K +
Sbjct: 272 LPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDV 331

Query: 114 ITWNAM-----------------------------------ISGYAQNGLATHVLELYRE 138
           ++WNAM                                   I+GY+Q G +   L L+R+
Sbjct: 332 VSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQ 391

Query: 139 MKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN----------GFGSNPFLNNA 188
           M   G  P+ VT + VLS+CA LGA S G E+      N          G   +  + NA
Sbjct: 392 MIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNA 451

Query: 189 LINMYARCGNLKKARAIFDGMP--RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS--G 244
           LI+MY++C + K AR+IFD +P   + VV+WT +IGG+  +G    A++LF EM+    G
Sbjct: 452 LIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYG 511

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
           + P+      +L AC+H      G + + Y +++            C++D+  + G ++ 
Sbjct: 512 VAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDT 571

Query: 304 ALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLL 357
           A  + +SM  +     W +++    +H     A   F K+ K    P +  + V+L
Sbjct: 572 ARHVFDSM-SQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVL 626



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 135/273 (49%), Gaps = 9/273 (3%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +N LI  ++    +  A+++  +M   G   +  T+  +L  C +      G   H 
Sbjct: 120 AVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHG 179

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL---ITWNAMISGYAQNGL 128
           +    G + +  + N L+ MY +CGS++    +FD++ ++G+   I+WN+++S + ++  
Sbjct: 180 LICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSN 239

Query: 129 ATHVLELYREM------KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN 182
           A   L+L+ +M      K      D ++ V +L +C  L A     EV      NG   +
Sbjct: 240 AWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPD 299

Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
            F+ NALI+ YA+CG ++ A  +F+ M  K VVSW A++ GY   G+ E A +LF  M K
Sbjct: 300 VFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRK 359

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
             I  D   + +V++  S  G + + L  F  M
Sbjct: 360 ENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM 392



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 121/263 (46%), Gaps = 11/263 (4%)

Query: 83  SVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL 142
           S+G  ++  Y+ CG+ DY   + ++V     + WN +I  + + G     + +   M   
Sbjct: 90  SLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRA 149

Query: 143 GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202
           G  PD  T   VL +C  L ++  G      I  NGF SN F+ NAL+ MY+RCG+L++A
Sbjct: 150 GTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 209

Query: 203 RAIFDGMPRK---TVVSWTAIIGGYGIHGHGEVAVQLFDEML------KSGIRPDGTAFV 253
             IFD + ++    V+SW +I+  +    +   A+ LF +M        +  R D  + V
Sbjct: 210 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 269

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           ++L AC       +  E  +G   + G  P       ++D   + G +  A+++  +M+ 
Sbjct: 270 NILPACGSLKAVPQTKE-VHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVF-NMME 327

Query: 314 EPDGAVWGALLGACKIHKNVELA 336
             D   W A++       N E A
Sbjct: 328 FKDVVSWNAMVAGYSQSGNFEAA 350


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/551 (39%), Positives = 319/551 (57%), Gaps = 37/551 (6%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE +      V YN ++S YV   L  E +++ G+M + G   + +TML  +  C + 
Sbjct: 297 IFDECVDKN--LVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSEL 354

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             +  G  CH   ++ GL+   +V N ++ MY+KCG  +   ++FD++  K  ++WN++I
Sbjct: 355 DDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLI 414

Query: 121 SGYAQNG-------------------------------LATHVLELYREMKSLGVCPDAV 149
           +G+ +NG                               +    +EL+R M+S G+  D V
Sbjct: 415 AGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKV 474

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
           T VGV S+C +LGA  +   +   I+      +  L  AL++M+ARCG+ + A  +F+ M
Sbjct: 475 TMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKM 534

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
            ++ V +WTA IG   + G+G  A++LFDEML+ GI+PDG  FV++L+A SH GL ++G 
Sbjct: 535 VKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGW 594

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
             F  MK+ YG+ P   HY CMVDLLGRAG L+EAL LI SM +EP+  +WG+LL AC++
Sbjct: 595 HIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRV 654

Query: 330 HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYS 389
           HKNV++A  A  ++ +L+P  TG +VLLSNIY+ A   D + +VR+ ++E+   K PG S
Sbjct: 655 HKNVDIAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSS 714

Query: 390 YVELKGRVHLFMVGDRNHHQTVEIYRMLD----KLENLVQEHDGTKRSDQKNSEEHLNDT 445
            +E+ G++  F  GD +H +   I  ML     +L ++    D T      N +E     
Sbjct: 715 SIEINGKIFEFTTGDESHPEMTHIEPMLKEICCRLRDIGYVPDLTNVLLDVNEKEKEYLL 774

Query: 446 EVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHF 505
             HSEKLAIAF +I+T  G  I V KNLRIC DCH F KLVSK   R+ IVRD  RFH F
Sbjct: 775 SRHSEKLAIAFALISTGQGMPIRVAKNLRICSDCHSFAKLVSKSYSREIIVRDNNRFHFF 834

Query: 506 KSGFCSCKDYW 516
           + GFCSC DYW
Sbjct: 835 QQGFCSCGDYW 845



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 122/394 (30%), Positives = 188/394 (47%), Gaps = 39/394 (9%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+   S    V + +LI GY       EAVSLF +M E G+  NSVTM+ ++  C   
Sbjct: 196 VFDK--MSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKL 253

Query: 61  GYLWLG-MCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
             L LG   C CI  +  L+++  + N L+ MY+KCG++D  RK+FD+  +K L+ +N +
Sbjct: 254 QDLQLGEQVCTCIG-ELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTI 312

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           +S Y + GLA  VL +  EM   G  PD +T +  +S+C+ L   S G      +  NG 
Sbjct: 313 MSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGL 372

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV------- 232
                + NA+INMY +CG  + A  +FD M  KT VSW ++I G+  +G  E        
Sbjct: 373 EGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSA 432

Query: 233 ------------------------AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
                                   A++LF  M   GI  D    V V SAC + G  D  
Sbjct: 433 MPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLA 492

Query: 269 LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACK 328
            ++ +G   K  +       T +VD+  R G    A+++   M V+ D + W A +GA  
Sbjct: 493 -KWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKM-VKRDVSAWTAAIGAMA 550

Query: 329 IHKNVELAELAFGKVIK--LEPMNTGYYVLLSNI 360
           +  N   A   F ++++  ++P    +  LL+ +
Sbjct: 551 MEGNGTGAIELFDEMLQQGIKPDGVVFVALLTAL 584



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 183/377 (48%), Gaps = 6/377 (1%)

Query: 3   DESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGY 62
           D  I  TH    +++LI G+    L  +A+ +F ++   G   ++ T   +L  C     
Sbjct: 97  DNGIMGTHYM--FSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAA 154

Query: 63  LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISG 122
           L  G   H   VK G + D  V N L+  Y +CG +D  R++FD++ E+ +++W ++I G
Sbjct: 155 LTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGG 214

Query: 123 YAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN 182
           YA+ G     + L+ EM  +G+ P++VT VGV+S+CA L    +G +V   I       N
Sbjct: 215 YAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVN 274

Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
             + NAL++MY +CG + KAR IFD    K +V +  I+  Y   G     + +  EMLK
Sbjct: 275 ALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLK 334

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
            G RPD    +S +SACS       G ++ +G   + GL+        ++++  + G+  
Sbjct: 335 HGPRPDRITMLSAVSACSELDDVSCG-KWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQE 393

Query: 303 EALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362
            A  + + ML       W +L+     + ++E A   F  +   + ++  +  ++  +  
Sbjct: 394 MACRVFDRML-NKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVS--WNTMIGALVQ 450

Query: 363 EARNLDGIMRVRMMMRE 379
           E+   + I   R+M  E
Sbjct: 451 ESMFKEAIELFRVMQSE 467



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 115/219 (52%), Gaps = 8/219 (3%)

Query: 97  SVDYGRKLFDQVPEKGLIT-----WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTF 151
           S++Y +K  +   E   I      ++++I G++  GL    + ++R++  +G  PD  TF
Sbjct: 83  SLEYAQKALELFIEDNGIMGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTF 142

Query: 152 VGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR 211
             VLS+C    A + G +V   I   GF  + F+ N+LI+ Y  CG +   R +FD M  
Sbjct: 143 PFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSE 202

Query: 212 KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL-E 270
           + VVSWT++IGGY   G  + AV LF EM++ GIRP+    V V+SAC  A L D  L E
Sbjct: 203 RNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISAC--AKLQDLQLGE 260

Query: 271 YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
                  +  L+        +VD+  + G +++A ++ +
Sbjct: 261 QVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFD 299


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/509 (42%), Positives = 309/509 (60%), Gaps = 5/509 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V ++A+I GYV +  + EA+ LF +M  +  ++   VT+  +L  C     L  G   HC
Sbjct: 277 VSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHC 336

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K G  LD  +GN L++MY KCG +D   + FD++  K  ++++A++SG  QNG A  
Sbjct: 337 YIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAV 396

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L ++R M+  G+ PD  T +GVL +C+HL A   G      +   GF ++  + NALI+
Sbjct: 397 ALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALID 456

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY++CG +  AR +F+ M R  +VSW A+I GYGIHG G  A+ LF ++L  G++PD   
Sbjct: 457 MYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDIT 516

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+ +LS+CSH+GL  +G  +F  M   + + P  EH  CMVD+LGRAG ++EA   I +M
Sbjct: 517 FICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNM 576

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
             EPD  +W ALL AC+IHKN+EL E    K+  L P +TG +VLLSNIYS A   D   
Sbjct: 577 PFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAA 636

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL----ENLVQEH 427
            +R+  ++  LKK PG S++E+ G VH F+ GD++H Q  +I R L++L    + L  + 
Sbjct: 637 HIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQA 696

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           + +        EE       HSEKLAIAFGI+N   G  I+V KNLR+CGDCH  IK ++
Sbjct: 697 ECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMT 756

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            I  R+  VRDA RFHHFK+G C+C D+W
Sbjct: 757 LITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 169/361 (46%), Gaps = 12/361 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE    +   + +N +I  Y  N     A+ L+  M   GV  N  T   +L  C   
Sbjct: 65  LFDEIPNPS--VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGL 122

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             +  G+  H     FGL+ D  V   L+  Y KCG +   ++LF  +  + ++ WNAMI
Sbjct: 123 LAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMI 182

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +G +  GL    ++L  +M+  G+CP++ T VGVL +     A   G  +        F 
Sbjct: 183 AGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFD 242

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           +   +   L++MYA+C  L  AR IFD M  +  VSW+A+IGGY      + A++LFD+M
Sbjct: 243 NGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQM 302

Query: 241 -LKSGIRPDGTAFVSVLSACSHAGLTDKGLE---YFYGMKNKYGLQPGPEHYTCMVDLLG 296
            LK  + P      SVL AC+      +G +   Y   + +   +  G      ++ +  
Sbjct: 303 ILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLG----NTLLSMYA 358

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356
           + G +++A+   + M    D   + A++  C  + N  +A L+  ++++L  ++     +
Sbjct: 359 KCGVIDDAIRFFDEM-NPKDSVSFSAIVSGCVQNGNAAVA-LSIFRMMQLSGIDPDLTTM 416

Query: 357 L 357
           L
Sbjct: 417 L 417



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 154/316 (48%), Gaps = 2/316 (0%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           LL  C+    L      H   +K   + D SV + L  +Y+ C  V   R+LFD++P   
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
           +I WN +I  YA NG     ++LY  M  LGV P+  T+  VL +C+ L A   G+E+  
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
             +  G  S+ F+  AL++ YA+CG L +A+ +F  M  + VV+W A+I G  ++G  + 
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDD 193

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
           AVQL  +M + GI P+ +  V VL     A     G +  +G   +     G    T ++
Sbjct: 194 AVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHG-KALHGYCVRRSFDNGVVVGTGLL 252

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTG 352
           D+  +   L  A ++ + M V  + + W A++G       ++ A   F ++I  + M+  
Sbjct: 253 DMYAKCQCLLYARKIFDVMGVRNEVS-WSAMIGGYVASDCMKEALELFDQMILKDAMDPT 311

Query: 353 YYVLLSNIYSEARNLD 368
              L S + + A+  D
Sbjct: 312 PVTLGSVLRACAKLTD 327



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 142/277 (51%), Gaps = 6/277 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V ++A++SG V N   + A+S+F  M+  G++ +  TML +LP C     L  G C H 
Sbjct: 378 SVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHG 437

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +  G   D  + N L+ MY KCG + + R++F+++    +++WNAMI GY  +GL   
Sbjct: 438 YLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGME 497

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--AL 189
            L L+ ++ +LG+ PD +TF+ +LSSC+H G    G  +     +  F   P + +   +
Sbjct: 498 ALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEG-RLWFDAMSRDFSIVPRMEHCICM 556

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           +++  R G + +A      MP +  V  W+A++    IH + E+  ++  ++   G    
Sbjct: 557 VDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPEST 616

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
           G  FV + +  S AG  D         K+ +GL+  P
Sbjct: 617 GN-FVLLSNIYSAAGRWDDAAHIRITQKD-WGLKKIP 651



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 2/181 (1%)

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
            ++ +L +C    + +   ++ Q    N   ++  + + L  +Y  C  +  AR +FD +
Sbjct: 10  NYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEI 69

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
           P  +V+ W  II  Y  +G  + A+ L+  ML  G+RP+   +  VL ACS     + G+
Sbjct: 70  PNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGV 129

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
           E  +     +GL+      T +VD   + G L EA  L  SM    D   W A++  C +
Sbjct: 130 E-IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSM-SHRDVVAWNAMIAGCSL 187

Query: 330 H 330
           +
Sbjct: 188 Y 188



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 22/146 (15%)

Query: 10  HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPIC-----VDPGYLW 64
           H  V +NA+I GY ++ L  EA+ LF  +   G++ + +T +CLL  C     V  G LW
Sbjct: 477 HDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLW 536

Query: 65  LGMCCHCICVKFGLDLDFSVGN------CLMTMYVKCGSVDYGRKLFDQVP-EKGLITWN 117
                        +  DFS+        C++ +  + G +D        +P E  +  W+
Sbjct: 537 FD----------AMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWS 586

Query: 118 AMISGYAQNGLATHVLELYREMKSLG 143
           A++S    +       E+ ++++SLG
Sbjct: 587 ALLSACRIHKNIELGEEVSKKIQSLG 612


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/511 (39%), Positives = 308/511 (60%), Gaps = 10/511 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  +I GY  N  + +A  LF  M+E+G++ + +T + ++  C     L      H  
Sbjct: 326 VSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQ 385

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               G   D  V   L+ MY KCG++   R++FD +P + +++W+AMI  Y +NG  T  
Sbjct: 386 VDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEA 445

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            E +  MK   + PD VT++ +L++C HLGA  VG+E+  Q       S+  L NALI M
Sbjct: 446 FETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIM 505

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
            A+ G++++AR IFD M R+ V++W A+IGGY +HG+   A+ LFD MLK   RP+   F
Sbjct: 506 NAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTF 565

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           V VLSACS AG  D+G  +F  +    G+ P  + Y CMVDLLGRAG+L+EA  LI+SM 
Sbjct: 566 VGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMP 625

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           V+P  ++W +LL AC+IH N+++AE A  + + ++P +   YV LS++Y+ A   + + +
Sbjct: 626 VKPTSSIWSSLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAK 685

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR +M  R ++K+ G +++E+ G+VH F+V DR+H    EIY  L +L N ++       
Sbjct: 686 VRKVMESRGIRKEQGCTWIEVAGKVHTFVVEDRSHPLVGEIYAELARLMNAIKREGYIPI 745

Query: 433 SD-------QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
           +        ++  EE ++    HSEKLAIA+G+++   GT I + KNLR+C DCH   K 
Sbjct: 746 TQNVLHDVGEQQKEEAIS---YHSEKLAIAYGVLSLPSGTPIRIYKNLRVCSDCHSASKF 802

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +SK+  R+ I RDA+RFHHFK G CSC DYW
Sbjct: 803 ISKVTGREIIARDASRFHHFKDGVCSCGDYW 833



 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 188/346 (54%), Gaps = 4/346 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N ++ GY  +    +A  LF +M++ G++ N ++ L +L  C  P  L  G   H  C+
Sbjct: 227 FNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCM 286

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             GL  D  V   L+ MY  CGS++  R++FD +  + +++W  MI GYA+NG       
Sbjct: 287 NAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFG 346

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+  M+  G+ PD +T++ ++++CA     +   E+  Q+   GFG++  ++ AL++MYA
Sbjct: 347 LFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYA 406

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG +K AR +FD MPR+ VVSW+A+IG Y  +G+G  A + F  M +S I PDG  +++
Sbjct: 407 KCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYIN 466

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           +L+AC H G  D G+E  Y    K  L         ++ +  + G +  A  + ++M V 
Sbjct: 467 LLNACGHLGALDVGME-IYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTM-VR 524

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
            D   W A++G   +H N   A   F +++K    P +  +  +LS
Sbjct: 525 RDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLS 570



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 105/326 (32%), Positives = 173/326 (53%), Gaps = 4/326 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD     T   V +NALI+GY     V EA +LF +M ++G+E + +T L +L  C  P
Sbjct: 114 IFDSVENKT--VVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSP 171

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H   V  G   DF +G  L++MYVK GS+D  R++FD +  + + T+N M+
Sbjct: 172 AGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMV 231

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GYA++G      EL+  M+ +G+ P+ ++F+ +L  C    A + G  V  Q    G  
Sbjct: 232 GGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLV 291

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            +  +  +LI MY  CG+++ AR +FD M  + VVSWT +I GY  +G+ E A  LF  M
Sbjct: 292 DDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATM 351

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            + GI+PD   ++ +++AC+ +   +   E  +   +  G        T +V +  + G 
Sbjct: 352 QEEGIQPDRITYMHIMNACAISANLNHARE-IHSQVDIAGFGTDLLVSTALVHMYAKCGA 410

Query: 301 LNEALELIESMLVEPDGAVWGALLGA 326
           + +A ++ ++M    D   W A++GA
Sbjct: 411 IKDARQVFDAM-PRRDVVSWSAMIGA 435



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 160/340 (47%), Gaps = 33/340 (9%)

Query: 31  AVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90
           A  +  ++ E G  I+S T + L   C +     LG       ++ G  L+    N L+ 
Sbjct: 41  ANDVLQRLGEGGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIK 100

Query: 91  MYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVT 150
           +Y  CG+V   R++FD V  K ++TWNA+I+GYAQ G       L+R+M   G+ P  +T
Sbjct: 101 LYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIIT 160

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
           F+ VL +C+     + G EV  Q+   GF S+  +  AL++MY + G++  AR +FDG+ 
Sbjct: 161 FLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLH 220

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL-------------- 256
            + V ++  ++GGY   G  E A +LF  M + G++P+  +F+S+L              
Sbjct: 221 IRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKA 280

Query: 257 --SACSHAGLTD--KGLEYFYGMKNKYGLQPGPEH------------YTCMVDLLGRAGQ 300
             + C +AGL D  +       M    G   G               +T M++     G 
Sbjct: 281 VHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGN 340

Query: 301 LNEALELIESML---VEPDGAVWGALLGACKIHKNVELAE 337
           + +A  L  +M    ++PD   +  ++ AC I  N+  A 
Sbjct: 341 IEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAR 380


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/507 (41%), Positives = 315/507 (62%), Gaps = 7/507 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N +I GY  N     A+SL+ +MR+ G+  +  T   +L  C     +  G   H   +
Sbjct: 70  WNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVI 129

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           + GL+ D  VG  L+ MY KCG V+  R++FD++ E+ ++ WN+M++ Y+QNG     L 
Sbjct: 130 RSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLA 189

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L R M   G+ P   TFV  +++ A  G    G E+      +GF SN  +  AL++MYA
Sbjct: 190 LCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYA 249

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           + G++  AR++F+ +  K VVSW A+I GY +HGH   A+ LF EM K  + PD   FV 
Sbjct: 250 KSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEM-KGKVLPDHITFVG 308

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VL+ACSH GL ++G  +F  M + + + P  +HYTCM+DLLG  G+L EA +LI  M VE
Sbjct: 309 VLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVE 368

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
           PD  VWGALL +CKIH NVE+ ELA  K+++LEP + G YV+LSN+Y++A   DG+ R+R
Sbjct: 369 PDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKWDGVARLR 428

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE-----HDG 429
            +M  + LKK    S++E+  +VH F+  D +H ++  IY  L +   L++E       G
Sbjct: 429 DLMMNKGLKKSIACSWIEVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLMKEAGYAPQVG 488

Query: 430 TKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKI 489
           +   D ++ +E ++    HSE+LAIAFG+I+TS GT+++++KNLRIC DCH+ IK +SKI
Sbjct: 489 SVFHDVED-DEKVDMVSCHSERLAIAFGLISTSAGTKLLIIKNLRICEDCHVAIKFISKI 547

Query: 490 VDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +R+  +RD  R+HHFK G CSC D+W
Sbjct: 548 TEREITIRDVNRYHHFKDGVCSCGDFW 574



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 144/278 (51%), Gaps = 2/278 (0%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           LL  CV    +  G   H    + G+  +  +   L+ +Y  C S+     LFD++ ++ 
Sbjct: 7   LLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKRN 66

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
           L  WN MI GYA NG     + LY +M+  G+ PD  TF  VL +C+ L A   G ++ +
Sbjct: 67  LFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHK 126

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
            +  +G  S+ F+  ALI+MYA+CG ++ AR +FD +  + VV W +++  Y  +G  + 
Sbjct: 127 DVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDE 186

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
           ++ L   M  +G++P    FV  ++A +  GL  +G E  +G   ++G +   +  T ++
Sbjct: 187 SLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKE-LHGYSWRHGFESNDKVKTALM 245

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           D+  ++G +N A  L E +L E     W A++    +H
Sbjct: 246 DMYAKSGSVNVARSLFE-LLEEKRVVSWNAMITGYAMH 282



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 137/259 (52%), Gaps = 8/259 (3%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            VC+N++++ Y  N    E+++L   M   G++    T +  +    D G L  G   H 
Sbjct: 168 VVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHG 227

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              + G + +  V   LM MY K GSV+  R LF+ + EK +++WNAMI+GYA +G A  
Sbjct: 228 YSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANE 287

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--AL 189
            L+L++EMK   V PD +TFVGVL++C+H G  + G ++  +   + F   P + +   +
Sbjct: 288 ALDLFKEMKG-KVLPDHITFVGVLAACSHGGLLNEG-KMHFRSMISDFNIWPTVQHYTCM 345

Query: 190 INMYARCGNLKKA-RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP- 247
           I++   CG L++A + I +         W A++    IHG+ E+     +++++  + P 
Sbjct: 346 IDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVE--LEPD 403

Query: 248 DGTAFVSVLSACSHAGLTD 266
           DG  +V + +  + AG  D
Sbjct: 404 DGGNYVILSNMYAQAGKWD 422



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 2/176 (1%)

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
           +  +L SC    A   G ++  +I   G   NP L   L+N+Y  C +L  A  +FD + 
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270
           ++ +  W  +I GY  +G  E+A+ L+ +M   G+ PD   F  VL ACS     ++G +
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK 123

Query: 271 YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
               +  + GL+        ++D+  + G +  A ++ +  + E D   W ++L  
Sbjct: 124 IHKDVI-RSGLESDVFVGAALIDMYAKCGCVESARQVFDK-IDERDVVCWNSMLAT 177


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/546 (39%), Positives = 315/546 (57%), Gaps = 45/546 (8%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           TH   C  +   G       ++A+SLF ++RE  +  +  T   +L  C     +  G  
Sbjct: 79  THWNTCLRSFAEG----DSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKI 134

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWN----------- 117
            H    K GL  +  + N ++ +Y  CG +   RK+FD++P++ +ITWN           
Sbjct: 135 VHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGD 194

Query: 118 --------------------AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
                               +MI GYAQ G +   ++L+ EM+  G+ P+ VT V VL +
Sbjct: 195 AEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVA 254

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
           CA +G   +G  +      +G+  N  + N LI+MY +CG L+ A  IFD M  +TVVSW
Sbjct: 255 CADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSW 314

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
           +A+I G   HG  E A+ LF++M+ +G++P+   F+ +L ACSH G+ +KG +YF  M  
Sbjct: 315 SAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTR 374

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
            YG+ P  EHY CMVDL  RAG L EA E I +M + P+G VWGALLG CK+HKN++LAE
Sbjct: 375 DYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAE 434

Query: 338 LAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRV 397
            A   + KL+P+N GYYV+LSNIY+EA   + + RVR +MR+R +KK PG+S + ++G V
Sbjct: 435 EATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVV 494

Query: 398 HLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS-------DQKNSEEHLNDTEVHSE 450
           + F+ GD  H QT EI++  +KL   ++       +       ++   E+ L     HSE
Sbjct: 495 YNFVAGDDTHPQTEEIFQTWEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYR---HSE 551

Query: 451 KLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFC 510
           KLA+ FG+I T+PGT I +MKNLR+C DCH  +K++S +  R+ +VRD  RFH FK+G C
Sbjct: 552 KLAVVFGLIKTTPGTVIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSC 611

Query: 511 SCKDYW 516
           SC DYW
Sbjct: 612 SCGDYW 617



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 122/288 (42%), Gaps = 38/288 (13%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
            S  Y + +F  +    +  WN  +  +A+       + L+  ++   + PD  T   VL
Sbjct: 61  SSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVL 120

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
            +C+ L     G  V   ++  G  SN FL N ++++YA CG +  AR +FD MP++ V+
Sbjct: 121 KACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVI 180

Query: 216 -------------------------------SWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
                                          SWT++IGGY   G  + A+ LF EM  +G
Sbjct: 181 TWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAG 240

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
           + P+    V+VL AC+  G    G    +   N+ G +        ++D+  + G L +A
Sbjct: 241 LLPNEVTVVAVLVACADMGNLVLG-RRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDA 299

Query: 305 LELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTG 352
             + ++M  E     W A++     H   E A   F K+I     NTG
Sbjct: 300 CRIFDNM-EERTVVSWSAMIAGLAAHGRAEDALALFNKMI-----NTG 341


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/520 (43%), Positives = 315/520 (60%), Gaps = 16/520 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++A+I+GY    L  EA+ +F +MR  G E N VT++ LL  C   G L  G   HC 
Sbjct: 333 VTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCH 392

Query: 73  CVKFGLDLD-------FSVGNCLMTMYVKCGSVDYGRKLFDQVPEK--GLITWNAMISGY 123
            +K+ L+LD         V N L+ MY KC S    R +FD +P K   ++TW  +I G 
Sbjct: 393 AIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGN 452

Query: 124 AQNGLATHVLELYREMKSLG--VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGS 181
           AQ+G A   LEL+ +M      V P+A T    L +CA LGA   G ++   +  N F S
Sbjct: 453 AQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFES 512

Query: 182 NP-FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
              F+ N LI+MY++ G++  AR +FD M ++  VSWT+++ GYG+HG GE A+Q+F EM
Sbjct: 513 AMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEM 572

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            K G+ PDG  FV VL ACSH+G+ D+G+ YF GM   +G+ PG EHY CMVDLL RAG+
Sbjct: 573 QKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGR 632

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L+EA+ELI  M ++P  AVW ALL AC+++ NVEL E A  ++++LE  N G Y LLSNI
Sbjct: 633 LDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNI 692

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+ AR    + R+R +M+   +KK PG S+V+ +     F  GD +H  + +IY +L  L
Sbjct: 693 YANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDL 752

Query: 421 ENLVQE----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
              ++      D        + EE  +    HSEKLA+A+GI+ T+PG  I + KNLR C
Sbjct: 753 MQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRAC 812

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           GDCH     +S I++ + IVRD++RFHHFK+G CSC+ YW
Sbjct: 813 GDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 852



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 114/408 (27%), Positives = 198/408 (48%), Gaps = 53/408 (12%)

Query: 1   VFDE-SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICV 58
           VFDE   +     V +N++++ Y+       A+ +F +M E  G+  ++V+++ +LP C 
Sbjct: 183 VFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACA 242

Query: 59  DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
             G    G   H   ++ GL  D  VGN ++ MY KCG ++   K+F+++  K +++WNA
Sbjct: 243 SVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNA 302

Query: 119 M-----------------------------------ISGYAQNGLATHVLELYREMKSLG 143
           M                                   I+GYAQ GL    L+++R+M+  G
Sbjct: 303 MVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCG 362

Query: 144 VCPDAVTFVGVLSSCAHLG-------AHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196
             P+ VT V +LS CA  G        H   ++    +  N  G +  + NALI+MY++C
Sbjct: 363 SEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKC 422

Query: 197 GNLKKARAIFDGMPRK--TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG--IRPDGTAF 252
            + K ARA+FD +P K  +VV+WT +IGG   HG    A++LF +ML+    + P+    
Sbjct: 423 KSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTI 482

Query: 253 VSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
              L AC+  G    G + + Y ++N++          C++D+  ++G ++ A  + ++M
Sbjct: 483 SCALMACARLGALRFGRQIHAYVLRNRFE-SAMLFVANCLIDMYSKSGDVDAARVVFDNM 541

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLL 357
             + +G  W +L+    +H   E A   F ++ K  L P    + V+L
Sbjct: 542 H-QRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVL 588



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 121/459 (26%), Positives = 200/459 (43%), Gaps = 87/459 (18%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           S+H    +N LI   V    + + + L+ +M+  G   +  T   +L  C +      G 
Sbjct: 87  SSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGA 146

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG---LITWNAMISGYA 124
             H +    G + +  VGN L++MY +CG+ +  R++FD++ E+G   L++WN++++ Y 
Sbjct: 147 SVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYM 206

Query: 125 QNGLATHVLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP 183
           Q G +   ++++  M + LG+ PDAV+ V VL +CA +GA S G +V      +G   + 
Sbjct: 207 QGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDV 266

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVS--------------------------- 216
           F+ NA+++MYA+CG +++A  +F+ M  K VVS                           
Sbjct: 267 FVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREE 326

Query: 217 --------WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL---- 264
                   W+A+I GY   G G  A+ +F +M   G  P+    VS+LS C+ AG     
Sbjct: 327 KIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHG 386

Query: 265 ----------------TDKG--LEYFYGMKNKYGLQPGPEHYTCMVDLL----------- 295
                            D G  L     + + Y     P+    M DL+           
Sbjct: 387 KETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWT 446

Query: 296 ------GRAGQLNEALELIESMLVEPDGAVW-GALLGACKIHKNVELAELAFGKVI---- 344
                  + G+ NEALEL   ML +PD  V   A   +C +     L  L FG+ I    
Sbjct: 447 VLIGGNAQHGEANEALELFSQML-QPDNFVMPNAFTISCALMACARLGALRFGRQIHAYV 505

Query: 345 ---KLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380
              + E         L ++YS++ ++D    V   M +R
Sbjct: 506 LRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQR 544


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/509 (42%), Positives = 308/509 (60%), Gaps = 5/509 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V ++A+I GYV +  + EA+ LF +M  +  ++   VT+  +L  C     L  G   HC
Sbjct: 277 VSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHC 336

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K G  LD  +GN L++MY KCG +D   + FD +  K  ++++A++SG  QNG A  
Sbjct: 337 YIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAV 396

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L ++R M+  G+ PD  T +GVL +C+HL A   G      +   GF ++  + NALI+
Sbjct: 397 ALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALID 456

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY++CG +  AR +F+ M R  +VSW A+I GYGIHG G  A+ LF ++L  G++PD   
Sbjct: 457 MYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDIT 516

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+ +LS+CSH+GL  +G  +F  M   + + P  EH  CMVD+LGRAG ++EA   I +M
Sbjct: 517 FICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNM 576

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
             EPD  +W ALL AC+IHKN+EL E    K+  L P +TG +VLLSNIYS A   D   
Sbjct: 577 PFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAA 636

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL----ENLVQEH 427
            +R+  ++  LKK PG S++E+ G VH F+ GD++H Q  +I R L++L    + L  + 
Sbjct: 637 HIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQA 696

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           + +        EE       HSEKLAIAFGI+N   G  I+V KNLR+CGDCH  IK ++
Sbjct: 697 ECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHAAIKFMT 756

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            I  R+  VRDA RFHHFK+G C+C D+W
Sbjct: 757 VITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 168/361 (46%), Gaps = 12/361 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE    +   + +N +I  Y  N     A+ L+  M   GV  N  T   +L  C   
Sbjct: 65  LFDEIPNPS--VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGL 122

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             +  G+  H     FGL+ D  V   L+  Y KCG +   ++LF  +  + ++ WNAMI
Sbjct: 123 LAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMI 182

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +G +  GL    ++L  +M+  G+CP++ T VGVL +     A   G  +        F 
Sbjct: 183 AGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFD 242

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           +   +   L++MYA+C  L  AR IFD M  +  VSW+A+IGGY      + A++LFD+M
Sbjct: 243 NGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQM 302

Query: 241 -LKSGIRPDGTAFVSVLSACSHAGLTDKGLE---YFYGMKNKYGLQPGPEHYTCMVDLLG 296
            LK  + P      SVL AC+      +G +   Y   +     +  G      ++ +  
Sbjct: 303 ILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLG----NTLLSMYA 358

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356
           + G +++A+   + M    D   + A++  C  + N  +A L+  ++++L  ++     +
Sbjct: 359 KCGVIDDAIRFFDXM-NPKDSVSFSAIVSGCVQNGNAAVA-LSIFRMMQLSGIDPDLTTM 416

Query: 357 L 357
           L
Sbjct: 417 L 417



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 154/316 (48%), Gaps = 2/316 (0%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           LL  C+    L      H   +K   + D SV + L  +Y+ C  V   R+LFD++P   
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
           +I WN +I  YA NG     ++LY  M  LGV P+  T+  VL +C+ L A   G+E+  
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
             +  G  S+ F+  AL++ YA+CG L +A+ +F  M  + VV+W A+I G  ++G  + 
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDD 193

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
           AVQL  +M + GI P+ +  V VL     A     G +  +G   +     G    T ++
Sbjct: 194 AVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHG-KALHGYCVRRSFDNGVVVGTGLL 252

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTG 352
           D+  +   L  A ++ + M V  + + W A++G       ++ A   F ++I  + M+  
Sbjct: 253 DMYAKCQCLLYARKIFDVMGVRNEVS-WSAMIGGYVXSDCMKEALELFDQMILKDAMDPT 311

Query: 353 YYVLLSNIYSEARNLD 368
              L S + + A+  D
Sbjct: 312 PVTLGSVLRACAKLTD 327



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 142/277 (51%), Gaps = 6/277 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V ++A++SG V N   + A+S+F  M+  G++ +  TML +LP C     L  G C H 
Sbjct: 378 SVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHG 437

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +  G   D  + N L+ MY KCG + + R++F+++    +++WNAMI GY  +GL   
Sbjct: 438 YLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGME 497

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--AL 189
            L L+ ++ +LG+ PD +TF+ +LSSC+H G    G  +     +  F   P + +   +
Sbjct: 498 ALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEG-RLWFDAMSRDFSIVPRMEHCICM 556

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           +++  R G + +A      MP +  V  W+A++    IH + E+  ++  ++   G    
Sbjct: 557 VDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPEST 616

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
           G  FV + +  S AG  D         K+ +GL+  P
Sbjct: 617 GN-FVLLSNIYSAAGRWDDAAHIRITQKD-WGLKKIP 651



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 2/181 (1%)

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
            ++ +L +C    + +   ++ Q    N   ++  + + L  +Y  C  +  AR +FD +
Sbjct: 10  NYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEI 69

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
           P  +V+ W  II  Y  +G  + A+ L+  ML  G+RP+   +  VL ACS     + G+
Sbjct: 70  PNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGV 129

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
           E  +     +GL+      T +VD   + G L EA  L  SM    D   W A++  C +
Sbjct: 130 E-IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSM-SHRDVVAWNAMIAGCSL 187

Query: 330 H 330
           +
Sbjct: 188 Y 188



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 22/146 (15%)

Query: 10  HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPIC-----VDPGYLW 64
           H  V +NA+I GY ++ L  EA+ LF  +   G++ + +T +CLL  C     V  G LW
Sbjct: 477 HDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLW 536

Query: 65  LGMCCHCICVKFGLDLDFSVGN------CLMTMYVKCGSVDYGRKLFDQVP-EKGLITWN 117
                        +  DFS+        C++ +  + G +D        +P E  +  W+
Sbjct: 537 FD----------AMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWS 586

Query: 118 AMISGYAQNGLATHVLELYREMKSLG 143
           A++S    +       E+ ++++SLG
Sbjct: 587 ALLSACRIHKNIELGEEVSKKIQSLG 612


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/514 (41%), Positives = 314/514 (61%), Gaps = 5/514 (0%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           S    V Y ++I+GY    L  EAV LF +M E+G+  +  T+  +L  C     L  G 
Sbjct: 207 SDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGK 266

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
             H    +  L  D  V N LM MY KCGS+     +F ++  K +I+WN +I GY++N 
Sbjct: 267 RVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNC 326

Query: 128 LATHVLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
            A   L L+  + +     PD  T   VL +CA L A   G E+   I  NG+ S+  + 
Sbjct: 327 YANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVA 386

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           N+L++MYA+CG L  A  +FD +  K +VSWT +I GYG+HG G+ A+ LF++M ++GI 
Sbjct: 387 NSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIE 446

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
            D  +FVS+L ACSH+GL D+G  +F  M+++  ++P  EHY C+VD+L R G L +A  
Sbjct: 447 ADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYR 506

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366
            IE+M + PD  +WGALL  C+IH +V+LAE    KV +LEP NTGYYVL++NIY+EA  
Sbjct: 507 FIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEK 566

Query: 367 LDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLE-NLVQ 425
            + + R+R  + +R L+K+PG S++E+KGRV++F+ GD ++ +T  I   L K+   +++
Sbjct: 567 WEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIE 626

Query: 426 E-HDGTKRSDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLF 482
           E +    +    ++EE   +  +  HSEKLA+A GII++  G  I V KNLR+CGDCH  
Sbjct: 627 EGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEM 686

Query: 483 IKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            K +SK+  R+ ++RD+ RFH FK G CSC+ +W
Sbjct: 687 AKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 720



 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 107/333 (32%), Positives = 177/333 (53%), Gaps = 9/333 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  +     + +N++I+GYV N L  + +S+F +M   G+EI+  T++ +   C D 
Sbjct: 101 VFDEMTERD--VISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADS 158

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             + LG   H I VK     +    N L+ MY KCG +D  + +F ++ ++ ++++ +MI
Sbjct: 159 RLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMI 218

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GYA+ GLA   ++L+ EM+  G+ PD  T   VL+ CA       G  V + I+ N  G
Sbjct: 219 AGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLG 278

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            + F++NAL++MYA+CG++++A  +F  M  K ++SW  IIGGY  + +   A+ LF+ +
Sbjct: 279 FDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLL 338

Query: 241 LKSG-IRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYT-CMVDLLGR 297
           L+     PD      VL AC+     DKG E + Y M+N Y       H    +VD+  +
Sbjct: 339 LEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGY---FSDRHVANSLVDMYAK 395

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
            G L  A  L +  +   D   W  ++    +H
Sbjct: 396 CGALLLAHMLFDD-IASKDLVSWTVMIAGYGMH 427



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 102/312 (32%), Positives = 160/312 (51%), Gaps = 4/312 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N L++    +   S ++ LF KM   GVE++S T  C+         +  G   H   +
Sbjct: 12  WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFIL 71

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K G     SVGN L+  Y+K   VD  RK+FD++ E+ +I+WN++I+GY  NGLA   L 
Sbjct: 72  KSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLS 131

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           ++ +M   G+  D  T V V + CA     S+G  V        F       N L++MY+
Sbjct: 132 VFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYS 191

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG+L  A+A+F  M  ++VVS+T++I GY   G    AV+LF+EM + GI PD     +
Sbjct: 192 KCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTA 251

Query: 255 VLSACSHAGLTDKGLEYFYGMK-NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           VL+ C+   L D+G      +K N  G      +   ++D+  + G + EA EL+ S + 
Sbjct: 252 VLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSN--ALMDMYAKCGSMQEA-ELVFSEMR 308

Query: 314 EPDGAVWGALLG 325
             D   W  ++G
Sbjct: 309 VKDIISWNTIIG 320



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 102/207 (49%), Gaps = 1/207 (0%)

Query: 105 FDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAH 164
           FD+V  +  + WN +++  A++G  +  + L+++M S GV  D+ TF  V  S + L + 
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 165 SVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGY 224
             G ++   I  +GFG    + N+L+  Y +   +  AR +FD M  + V+SW +II GY
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 225 GIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG 284
             +G  E  + +F +ML SGI  D    VSV + C+ + L   G    + +  K      
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG-RAVHSIGVKACFSRE 179

Query: 285 PEHYTCMVDLLGRAGQLNEALELIESM 311
                 ++D+  + G L+ A  +   M
Sbjct: 180 DRFCNTLLDMYSKCGDLDSAKAVFREM 206


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/514 (41%), Positives = 314/514 (61%), Gaps = 5/514 (0%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           S    V Y ++I+GY    L  EAV LF +M E+G+  +  T+  +L  C     L  G 
Sbjct: 358 SDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGK 417

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
             H    +  L  D  V N LM MY KCGS+     +F ++  K +I+WN +I GY++N 
Sbjct: 418 RVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNC 477

Query: 128 LATHVLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
            A   L L+  + +     PD  T   VL +CA L A   G E+   I  NG+ S+  + 
Sbjct: 478 YANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVA 537

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           N+L++MYA+CG L  A  +FD +  K +VSWT +I GYG+HG G+ A+ LF++M ++GI 
Sbjct: 538 NSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIE 597

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
            D  +FVS+L ACSH+GL D+G  +F  M+++  ++P  EHY C+VD+L R G L +A  
Sbjct: 598 ADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYR 657

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366
            IE+M + PD  +WGALL  C+IH +V+LAE    KV +LEP NTGYYVL++NIY+EA  
Sbjct: 658 FIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEK 717

Query: 367 LDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLE-NLVQ 425
            + + R+R  + +R L+K+PG S++E+KGRV++F+ GD ++ +T  I   L K+   +++
Sbjct: 718 WEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIE 777

Query: 426 E-HDGTKRSDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLF 482
           E +    +    ++EE   +  +  HSEKLA+A GII++  G  I V KNLR+CGDCH  
Sbjct: 778 EGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEM 837

Query: 483 IKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            K +SK+  R+ ++RD+ RFH FK G CSC+ +W
Sbjct: 838 AKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 107/333 (32%), Positives = 177/333 (53%), Gaps = 9/333 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  +     + +N++I+GYV N L  + +S+F +M   G+EI+  T++ +   C D 
Sbjct: 252 VFDEMTERD--VISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADS 309

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             + LG   H I VK     +    N L+ MY KCG +D  + +F ++ ++ ++++ +MI
Sbjct: 310 RLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMI 369

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GYA+ GLA   ++L+ EM+  G+ PD  T   VL+ CA       G  V + I+ N  G
Sbjct: 370 AGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLG 429

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            + F++NAL++MYA+CG++++A  +F  M  K ++SW  IIGGY  + +   A+ LF+ +
Sbjct: 430 FDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLL 489

Query: 241 LKSG-IRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYT-CMVDLLGR 297
           L+     PD      VL AC+     DKG E + Y M+N Y       H    +VD+  +
Sbjct: 490 LEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGY---FSDRHVANSLVDMYAK 546

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
            G L  A  L +  +   D   W  ++    +H
Sbjct: 547 CGALLLAHMLFDD-IASKDLVSWTVMIAGYGMH 578



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 129/268 (48%), Gaps = 1/268 (0%)

Query: 44  EINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRK 103
           +I+  T+  +L +C D   L  G          G  +D ++G+ L  MY  CG +    +
Sbjct: 91  DIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASR 150

Query: 104 LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163
           +FD+V  +  + WN +++  A++G  +  + L+++M S GV  D+ TF  V  S + L +
Sbjct: 151 VFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRS 210

Query: 164 HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGG 223
              G ++   I  +GFG    + N+L+  Y +   +  AR +FD M  + V+SW +II G
Sbjct: 211 VHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIING 270

Query: 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP 283
           Y  +G  E  + +F +ML SGI  D    VSV + C+ + L   G    + +  K     
Sbjct: 271 YVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG-RAVHSIGVKACFSR 329

Query: 284 GPEHYTCMVDLLGRAGQLNEALELIESM 311
                  ++D+  + G L+ A  +   M
Sbjct: 330 EDRFCNTLLDMYSKCGDLDSAKAVFREM 357


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/550 (39%), Positives = 313/550 (56%), Gaps = 43/550 (7%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           S  L V +NA+ISGY    L  EA  +F KM    ++++  T   ++ +C + G   LG 
Sbjct: 250 SKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGK 309

Query: 68  CCHCICVKF----GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGY 123
             H   +K       D+   V N L+T Y KCG VD  +++F+++PE+ L++WN ++SGY
Sbjct: 310 EMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGY 369

Query: 124 -------------------------------AQNGLATHVLELYREMKSLGVCPDAVTFV 152
                                          AQ G A   L+ +  MK  G  P    F 
Sbjct: 370 VNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFA 429

Query: 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK 212
           G + SC+ LG+   G ++  Q+   G+ S+    NALI MYARCG +  A  +F  MP  
Sbjct: 430 GAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCV 489

Query: 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF 272
             +SW A+I   G HG G  A++LF+EMLK GI PD  +F++V+SACSHAGL  +G +YF
Sbjct: 490 DAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYF 549

Query: 273 YGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKN 332
             M N YG+ P  EHY  ++DLL RAG+ +EA E++ESM  EP   +W ALL  C+IH N
Sbjct: 550 DSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGN 609

Query: 333 VELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVE 392
           ++L   A  ++ +L+P + G YVLLSN+Y+ A   + + +VR +MR+R +KK+PG S++E
Sbjct: 610 IDLGIEAAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIE 669

Query: 393 LKGRVHLFMVGDRNHHQTVEIYRMLDKLE------NLVQEHDGTKRSDQKNSEEHLNDTE 446
           ++ +VH F+VGD NH +  +IY  L++L         V +        + + +EH  +  
Sbjct: 670 VENKVHSFLVGDANHPEVRQIYNYLEQLVLEMRKIGYVPDTKCVLHDVESDLKEH--ELS 727

Query: 447 VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFK 506
            HSEKLA+A+G +    G  + V KNLRICGDCH   K +SK+V R+ +VRD  RFHHF+
Sbjct: 728 THSEKLAVAYGFMKLPHGATVRVFKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFR 787

Query: 507 SGFCSCKDYW 516
            G CSC DYW
Sbjct: 788 DGKCSCGDYW 797



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 145/334 (43%), Gaps = 62/334 (18%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +F ++      +V YNA+I+ Y  N     A+ LF  M+      ++ T   +L      
Sbjct: 101 IFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVL------ 154

Query: 61  GYLWL-----GMC--CHCICVKFGLDLDFSVGNCLMTMYVKCGS---------VDYGRKL 104
           G L L       C   HC  VK G     SV N L++ YVKC +         +   RKL
Sbjct: 155 GALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKL 214

Query: 105 FDQVPEKGLITW-------------------------------NAMISGYAQNGLATHVL 133
           FD++P +  ++W                               NAMISGYA  GL     
Sbjct: 215 FDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAF 274

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP----FLNNAL 189
           E++R+M    +  D  TF  V+S CA+ G   +G E+            P     +NNAL
Sbjct: 275 EMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNAL 334

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           I  Y +CG +  A+ IF+ MP + +VSW  I+ GY      + A   F+EM +  I    
Sbjct: 335 ITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNI---- 390

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP 283
            +++ ++S  +  G  ++ L++F  MK + G +P
Sbjct: 391 LSWIIMISGLAQIGFAEEALKFFNRMKLQ-GFEP 423



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 138/362 (38%), Gaps = 100/362 (27%)

Query: 53  LLPICV--DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE 110
           LL IC    P    L    H   +  G      + N L+ +Y K   ++Y R LFD++P+
Sbjct: 17  LLQICCLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQ 76

Query: 111 KGLIT---------------------------------WNAMISGYAQNGLATHVLELYR 137
             ++                                  +NAMI+ Y+ N      +EL+ 
Sbjct: 77  PDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFC 136

Query: 138 EMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ-------ANGFGSNPFLNNALI 190
           +M+     PD  TF  V      LGA ++  E E+  Q        +G G    + NALI
Sbjct: 137 DMQRDNFRPDNYTFTSV------LGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALI 190

Query: 191 NMYARCGN---------LKKARAIFDGMPRKTVVSWTAIIGGY----------------- 224
           + Y +C           + +AR +FD MP +  +SWT II GY                 
Sbjct: 191 SSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTS 250

Query: 225 ---GIHGHGEV-----------AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270
              G+  +  +           A ++F +M+ S I+ D   F SV+S C++AG    G E
Sbjct: 251 KKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKE 310

Query: 271 ---YFYGMKNKYGLQPGPEHY----TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGAL 323
              YF     K    P P+        ++    + G+++ A E+   M  E D   W  +
Sbjct: 311 MHAYFL----KTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKM-PERDLVSWNII 365

Query: 324 LG 325
           L 
Sbjct: 366 LS 367


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/526 (39%), Positives = 314/526 (59%), Gaps = 26/526 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDES    H    + A++SGY+ N +V EA  LF +M E+    N V+   +L   V  
Sbjct: 267 LFDES--PVHDVFTWTAMVSGYIQNRMVEEARELFDRMPER----NEVSWNAMLAGYVQG 320

Query: 61  GYLWLG------MCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLI 114
             + +       M C  +          S  N ++T Y +CG +   + LFD++P++  +
Sbjct: 321 ERVEMAKELFDVMPCRNV----------STWNTMITGYAQCGKISEAKNLFDKMPKRDPV 370

Query: 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
           +W AMI+GY+Q+G +   L L+  M+  G   +  +F   LS+CA + A  +G ++  ++
Sbjct: 371 SWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRL 430

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
              G+ +  F+ NAL+ MY +CG++++A  +F  M  K +VSW  +I GY  HG GE A+
Sbjct: 431 VKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEAL 490

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
           + F+ M + G++PD    V+VLSACSH GL DKG +YF+ M   YG++P  +HY CMVDL
Sbjct: 491 RFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDL 550

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           LGRAG L EA  L+++M  EPD A+WG LLGA ++H N ELAE A  K+  +EP N+G Y
Sbjct: 551 LGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMY 610

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
           VLLSN+Y+ +     + ++R+ MR++ +KK PGYS++E++ + H F VGD  H +  EI+
Sbjct: 611 VLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIF 670

Query: 415 RMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVM 470
             L+ L+  +++     ++         EE       HSE+LA+A+GI+  S G  I V+
Sbjct: 671 AFLEDLDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVI 730

Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KNLR+C DCH  IK ++K+  R  I+RD  RFHHFK G CSC DYW
Sbjct: 731 KNLRVCEDCHNAIKYMAKVTGRLIILRDNNRFHHFKDGSCSCGDYW 776



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 135/316 (42%), Gaps = 34/316 (10%)

Query: 62  YLWLGMCCHCICVKFGLDLDFSVG-NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           Y+  G C   + V   +    SV  N +++ Y++ G  +  R LFD++PE+ L++WN MI
Sbjct: 69  YMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPERDLVSWNVMI 128

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GY +N       EL+  M    VC    ++  +LS  A  G       V  ++      
Sbjct: 129 KGYVRNRNLGKARELFERMPERDVC----SWNTILSGYAQNGCVDDARRVFDRMPEK--- 181

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            N    NAL++ Y +   L++A  +F       +VSW  ++GG+        A Q FD M
Sbjct: 182 -NDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSM 240

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH----YTCMVDLLG 296
               +R D  ++ ++++  +  G  D+  + F            P H    +T MV    
Sbjct: 241 ---KVR-DVVSWNTIITGYAQNGEIDEARQLF---------DESPVHDVFTWTAMVSGYI 287

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG-----KVIKLEPMNT 351
           +   + EA EL + M  E +   W A+L      + VE+A+  F       V     M T
Sbjct: 288 QNRMVEEARELFDRM-PERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMIT 346

Query: 352 GYYVLLSNIYSEARNL 367
           GY        SEA+NL
Sbjct: 347 GY--AQCGKISEAKNL 360



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 120/294 (40%), Gaps = 56/294 (19%)

Query: 79  DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYRE 138
           D D    N  ++ Y++ G      ++F ++P    +++NAMISGY +NG       L+ E
Sbjct: 56  DSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDE 115

Query: 139 MKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGN 198
           M       D V++                                   N +I  Y R  N
Sbjct: 116 MPE----RDLVSW-----------------------------------NVMIKGYVRNRN 136

Query: 199 LKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSA 258
           L KAR +F+ MP + V SW  I+ GY  +G  + A ++FD M +     +  ++ ++LSA
Sbjct: 137 LGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEK----NDVSWNALLSA 192

Query: 259 CSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGA 318
                  ++    F G +  + L      + C++    +  ++ EA +  +SM V  D  
Sbjct: 193 YVQNSKLEEACVLF-GSRENWALVS----WNCLLGGFVKKKKIVEARQFFDSMKVR-DVV 246

Query: 319 VWGALLGACKIHKNVELAELAFGK-----VIKLEPMNTGYYVLLSNIYSEARNL 367
            W  ++     +  ++ A   F +     V     M +GY  + + +  EAR L
Sbjct: 247 SWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGY--IQNRMVEEAREL 298


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/433 (45%), Positives = 281/433 (64%), Gaps = 4/433 (0%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           ++T Y K G +D  R LFD + E+  I WN MI GYAQ+GL    L L+R+M +  V P+
Sbjct: 12  MITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVRPN 71

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
            VT + VLS+C   GA   G  V   I+ NG G N  +  +LI+MY++CG+L+ AR +F+
Sbjct: 72  EVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFE 131

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            +  K VV+W +++ GY +HG  + A++LF EM   G +P    F+ VL+ACSHAGL  +
Sbjct: 132 RISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVSE 191

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           G ++FY MK++YG++P  EHY CMV+LLGRAG L EA EL+++M ++ D  +WG LLGAC
Sbjct: 192 GWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGAC 251

Query: 328 KIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPG 387
           ++H N+ L E     ++     N+G YVLLSNIY+ A N +G+ RVR +M+E   +K+PG
Sbjct: 252 RLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKESGFEKEPG 311

Query: 388 YSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD----QKNSEEHLN 443
            S +E+  +VH F+ GD  H ++ EIY ML+++   ++ H  T ++D         +   
Sbjct: 312 CSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIVLHDLEDAQKER 371

Query: 444 DTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFH 503
              VHSEKLA+AFG+I T PGT I ++KNLR+C DCH   KL+SKI  R+ ++RD  RFH
Sbjct: 372 SLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGRKVVMRDRNRFH 431

Query: 504 HFKSGFCSCKDYW 516
           HF +G CSC DYW
Sbjct: 432 HFVNGLCSCGDYW 444



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 130/242 (53%), Gaps = 4/242 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            +C+N +I GY  + L +E + LF +M    V  N VT+L +L  C   G L  G   H 
Sbjct: 37  AICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHS 96

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                G+ ++  VG  L+ MY KCGS++  R +F+++  K ++ WN+M+ GYA +G +  
Sbjct: 97  YIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQD 156

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--AL 189
            L L++EM  +G  P  +TF+GVL++C+H G  S G +    ++ + +G  P + +   +
Sbjct: 157 ALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVSEGWKFFYSMK-DEYGIEPKVEHYGCM 215

Query: 190 INMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           +N+  R G L++A  +   M   +  V W  ++G   +HG+  +  Q+ + ++   +   
Sbjct: 216 VNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLHGNIALGEQIAEYLVSQNLANS 275

Query: 249 GT 250
           GT
Sbjct: 276 GT 277



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 2/144 (1%)

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
            A+I  YA+ G + +AR +FDG+  +  + W  +I GY  HG     + LF +ML + +R
Sbjct: 10  TAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVR 69

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           P+    ++VLSAC   G  + G  + +      G+       T ++D+  + G L +A  
Sbjct: 70  PNEVTVLAVLSACGQTGALETG-RWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDA-R 127

Query: 307 LIESMLVEPDGAVWGALLGACKIH 330
           L+   +   D   W +++    +H
Sbjct: 128 LVFERISNKDVVAWNSMVVGYAMH 151


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/520 (41%), Positives = 319/520 (61%), Gaps = 7/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICVD 59
           +FDE     + +  +NA+ISGYV      EA+ LF  M+E +    N  T+   L     
Sbjct: 151 LFDEMPHRDNFS--WNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAA 208

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              L  G   H   ++ GL+LD  V   L+ +Y KCGS++  R +FDQ+ +K +++W  M
Sbjct: 209 ISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTM 268

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I    ++G       L+R++   GV P+  TF GVL++CA L A  +G EV   +   G+
Sbjct: 269 IHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGY 328

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
               F  +AL+++Y++CGN + AR +F+ MPR  +VSWT++I GY  +G  ++A+Q F+ 
Sbjct: 329 DPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFES 388

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           +L+SG +PD   FV VLSAC+HAGL D GLEYF+ +K K+GL    +HY C++DLL R+G
Sbjct: 389 LLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSG 448

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
           +  EA  +I++M ++PD  +W +LLG C+IH N+ELAE A   + +LEP N   Y+ LSN
Sbjct: 449 RFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFELEPENPATYITLSN 508

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
           IY+ A       +VR  M  R + K PG S++E+K +VH+F+VGD +H +  +I+  L +
Sbjct: 509 IYANAGLWTEETKVRNDMDNRGIVKKPGKSWIEIKRQVHVFLVGDTSHPKISDIHEYLGE 568

Query: 420 LENLVQEHDGTKRSD--QKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRI 475
           L   ++E      ++    + EE   +  +  HSEKLA+AFGII+TSPGT I V KNLR 
Sbjct: 569 LSKKMKEEGYVADTNFVLHDVEEEQKEQNIFYHSEKLAVAFGIISTSPGTPIKVFKNLRT 628

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDY 515
           C DCH  +K +SKIV R+ IVRD+ RFH F  G CSCKDY
Sbjct: 629 CVDCHNAMKYISKIVQRKIIVRDSNRFHCFVDGSCSCKDY 668



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 144/346 (41%), Gaps = 46/346 (13%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +  +I  +   + + EAV    ++ +    + S     L+  C+    L LG   H    
Sbjct: 35  FEEIIELFCQQNRLKEAVDYLHRIPQPSPRLYST----LIAACLRHRKLELGKRVHAHTK 90

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
                    + N L+ MY KCGS+   + LFD++P+K L +WN MISGYA  G      +
Sbjct: 91  ASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARK 150

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN----------------- 177
           L+ EM       D  ++  V+S     G +   L++ + +Q N                 
Sbjct: 151 LFDEMPHR----DNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAA 206

Query: 178 -------------------GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWT 218
                              G   +  +  AL+++Y +CG+L +AR IFD M  K +VSWT
Sbjct: 207 AAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWT 266

Query: 219 AIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278
            +I      G  +    LF +++ SG+RP+   F  VL+AC+       G E  +G   +
Sbjct: 267 TMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKE-VHGYMTR 325

Query: 279 YGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
            G  P     + +V +  + G    A  +   M   PD   W +L+
Sbjct: 326 VGYDPFSFAASALVHVYSKCGNTETARRVFNQM-PRPDLVSWTSLI 370


>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 583

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/530 (40%), Positives = 312/530 (58%), Gaps = 18/530 (3%)

Query: 4   ESIKSTHLTVCYNALISGYVLNSLVSEA---------VSLFGKMREQGVEINSVTMLCLL 54
            +I  THL      L   ++ NS++            V+ + +M    V  ++ T   ++
Sbjct: 55  RAIAYTHLLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVI 114

Query: 55  PICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLI 114
             C D   L +G   HC  V  G  LD  V   L+T Y KCG ++  R++FD++PEK ++
Sbjct: 115 KSCADLSALKIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEAARQVFDRMPEKSVV 174

Query: 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
            WN+++SG+ QNGLA   + ++ +M+  G  PD+ TFV +LS+CA  GA S+G  V Q I
Sbjct: 175 AWNSLVSGFEQNGLAEDAIRVFYQMRESGFEPDSATFVSLLSACAQTGAISLGSWVHQYI 234

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
            + G   N  L  ALIN+Y+RCG++ KAR +FD M    V +WTA+I  YG HG+G+ AV
Sbjct: 235 VSEGLDVNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGKQAV 294

Query: 235 QLFDEMLKS-GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293
            LF++M    G  P+   FV+VLSAC+HAGL + G   +  M   Y L PG EH+ C+VD
Sbjct: 295 DLFNKMEDDCGSIPNNVTFVAVLSACAHAGLVEDGRSVYKRMTESYRLIPGVEHHVCIVD 354

Query: 294 LLGRAGQLNEALELIESMLVEPDG---AVWGALLGACKIHKNVELAELAFGKVIKLEPMN 350
           +LGRAG L+EA   I+ +    +    A+W A+LGACK+H+N +L      ++I LEP N
Sbjct: 355 MLGRAGFLDEAYRFIQQLDATGNATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPEN 414

Query: 351 TGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQT 410
            G++V+LSNIY+ +   D +  +R  M    L+K  GYS +E++ + +LF +GD +H +T
Sbjct: 415 PGHHVMLSNIYALSGKTDEVSHIRDRMMRNNLRKQVGYSIIEVENKTYLFSMGDESHQET 474

Query: 411 VEIYRMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTE 466
            EIYR L+ L +  +E      S+    Q   EE       HSEKLA+AFG++ T   + 
Sbjct: 475 GEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKT-VDSA 533

Query: 467 IVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           I V+KNLRIC DCH   K +S + +RQ IVRD  RFHHF++G CSC DYW
Sbjct: 534 ITVVKNLRICEDCHSAFKYISIVSNRQIIVRDKLRFHHFQNGSCSCLDYW 583



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 83/261 (31%), Positives = 135/261 (51%), Gaps = 4/261 (1%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H I   +G     S+   L+T+     ++ Y   LF  VP      +N++I   ++  L 
Sbjct: 31  HLIVTSYGRSR--SLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSKLRLP 88

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
            H +  YR M S  V P   TF  V+ SCA L A  +G  V      +GFG + ++  AL
Sbjct: 89  LHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALKIGKGVHCHAVVSGFGLDTYVQAAL 148

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           +  Y++CG+++ AR +FD MP K+VV+W +++ G+  +G  E A+++F +M +SG  PD 
Sbjct: 149 VTFYSKCGDMEAARQVFDRMPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQMRESGFEPDS 208

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
             FVS+LSAC+  G    G  + +      GL    +  T +++L  R G + +A E+ +
Sbjct: 209 ATFVSLLSACAQTGAISLG-SWVHQYIVSEGLDVNVKLGTALINLYSRCGDVGKAREVFD 267

Query: 310 SMLVEPDGAVWGALLGACKIH 330
            M  E + A W A++ A   H
Sbjct: 268 KM-KETNVAAWTAMISAYGTH 287


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/545 (40%), Positives = 309/545 (56%), Gaps = 39/545 (7%)

Query: 11  LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
           L V +NA+ISGYV +    EA+ +F KM   G++ +  T   +L  C + G+   G   H
Sbjct: 255 LVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVH 314

Query: 71  CICVKF----GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGY--- 123
              ++      LD   SV N L T+Y KCG VD  R++F+Q+P K L++WNA++SGY   
Sbjct: 315 AYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNA 374

Query: 124 ----------------------------AQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
                                       AQNG     L+L+  MKS G  P    F G +
Sbjct: 375 GRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAI 434

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
            +CA L A   G ++  Q+   GF S+    NALI MYA+CG ++ A  +F  MP    V
Sbjct: 435 IACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSV 494

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           SW A+I   G HGHG  A++LF+ MLK  I PD   F++VLS CSHAGL ++G  YF  M
Sbjct: 495 SWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSM 554

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVEL 335
              YG+ PG +HY  M+DLL RAG+ +EA ++IE+M VEP   +W ALL  C+IH N++L
Sbjct: 555 SGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDL 614

Query: 336 AELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKG 395
              A  ++ +L P + G YVLLSN+Y+     D + +VR +MR++ +KK+PG S++E++ 
Sbjct: 615 GIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVEN 674

Query: 396 RVHLFMVGDRNHHQTVEIYRMLD----KLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEK 451
           +VH+F+V D  H +   +Y  L+    K+  L    D         SE+       HSEK
Sbjct: 675 KVHVFLVDDIVHPEVQAVYNYLEELGLKMRKLGYIPDTKFVLHDMESEQKEYVLSTHSEK 734

Query: 452 LAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCS 511
           LA+ FG++    G  + V KNLRICGDCH   K +SK+V+R+ +VRD  RFHHFK+G CS
Sbjct: 735 LAVGFGLLKLPLGATVRVFKNLRICGDCHNAFKFMSKVVEREIVVRDGKRFHHFKNGECS 794

Query: 512 CKDYW 516
           C +YW
Sbjct: 795 CGNYW 799



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 144/542 (26%), Positives = 212/542 (39%), Gaps = 146/542 (26%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWL-----G 66
           TVCYNA+I+GY  N+    A+ LF  +   G   ++ T   +L      G L L      
Sbjct: 114 TVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVL------GALALIVEDEK 167

Query: 67  MC--CHCICVKFGLDLDFSVGNCLMTMYVKC----------------------------- 95
            C   HC  VK G     SV N L++++VKC                             
Sbjct: 168 QCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELS 227

Query: 96  -----------GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGV 144
                      G +D  R+  D + EK ++ WNAMISGY  +G     LE++R+M  LG+
Sbjct: 228 WTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGI 287

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQI-QANGFGSNPF---LNNALINMYARCGNLK 200
             D  T+  VLS+CA+ G    G +V   I +     S  F   +NNAL  +Y +CG + 
Sbjct: 288 QWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVD 347

Query: 201 KARAIFDGMPRKTVVSWTAIIGGY-------------------------------GIHGH 229
           +AR +F+ MP K +VSW AI+ GY                                 +G 
Sbjct: 348 EARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGF 407

Query: 230 GEVAVQLFDEMLKSGIRPDGTAFVSVLSACS-----------HAGLTDKGLE-------Y 271
           GE +++LF+ M   G  P   AF   + AC+           HA L   G +        
Sbjct: 408 GEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNA 467

Query: 272 FYGMKNKYGLQPGPE------------HYTCMVDLLGRAGQLNEALELIESMLVE---PD 316
              M  K G+                  +  M+  LG+ G   +ALEL E ML E   PD
Sbjct: 468 LITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPD 527

Query: 317 GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTG--YYVLLSNI------YSEARNLD 368
              +  +L  C     VE     F  +  L  +  G  +Y  + ++      +SEA+++ 
Sbjct: 528 RITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMI 587

Query: 369 GIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHD 428
             M V           +PG    E        + G R H       +  ++L  L+ +HD
Sbjct: 588 ETMPV-----------EPGPPIWE------ALLAGCRIHGNMDLGIQAAERLFELMPQHD 630

Query: 429 GT 430
           GT
Sbjct: 631 GT 632



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 123/252 (48%), Gaps = 6/252 (2%)

Query: 2   FDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPG 61
           F+E  +   LT  +  +ISG   N    E++ LF +M+ +G E         +  C    
Sbjct: 384 FEEMPERNLLT--WTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLA 441

Query: 62  YLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMIS 121
            L  G   H   V+ G D   S GN L+TMY KCG V+    LF  +P    ++WNAMI+
Sbjct: 442 ALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIA 501

Query: 122 GYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGS 181
              Q+G     LEL+  M    + PD +TF+ VLS+C+H G    G    + + +  +G 
Sbjct: 502 ALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSM-SGLYGI 560

Query: 182 NPFLNN--ALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFD 238
            P  ++   +I++  R G   +A+ + + MP +     W A++ G  IHG+ ++ +Q  +
Sbjct: 561 CPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAE 620

Query: 239 EMLKSGIRPDGT 250
            + +   + DGT
Sbjct: 621 RLFELMPQHDGT 632



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 127/296 (42%), Gaps = 59/296 (19%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPE--KGLITWNAMISGYAQNGLATHVLELYRE 138
           D      L+  +   G+ +  R++F   P   +  + +NAMI+GY+ N      +EL+R+
Sbjct: 80  DIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRD 139

Query: 139 MKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ-------ANGFGSNPFLNNALIN 191
           +   G  PD  TF  V      LGA ++ +E E+Q Q        +G G    + NAL++
Sbjct: 140 LLRNGFRPDNFTFTSV------LGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLS 193

Query: 192 MYARC----------------------------------------GNLKKARAIFDGMPR 211
           ++ +C                                        G L  AR   DGM  
Sbjct: 194 VFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTE 253

Query: 212 KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE- 270
           K VV+W A+I GY  HG    A+++F +M   GI+ D   + SVLSAC++AG    G + 
Sbjct: 254 KLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQV 313

Query: 271 --YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
             Y    + +  L         +  L  + G+++EA ++   M V+ D   W A+L
Sbjct: 314 HAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVK-DLVSWNAIL 368



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 33/131 (25%)

Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWT---- 218
           ++S+   V   + A+GF    ++ N LI++Y +  +L  A  +FD + +  +V+ T    
Sbjct: 30  SYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIA 89

Query: 219 -----------------------------AIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
                                        A+I GY  +  G  A++LF ++L++G RPD 
Sbjct: 90  AHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDN 149

Query: 250 TAFVSVLSACS 260
             F SVL A +
Sbjct: 150 FTFTSVLGALA 160


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/524 (41%), Positives = 314/524 (59%), Gaps = 22/524 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVD 59
           +FDES   T     + A++SGYV N ++ EA + F +M E+  V  N++    +    +D
Sbjct: 257 LFDES--PTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMD 314

Query: 60  PGY-LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
               L+  M C  I          S  N ++T Y + G +   RK FD +P++  ++W A
Sbjct: 315 IARELFESMPCRNI----------SSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAA 364

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           +I+GYAQ+G     L ++ E+K  G   +  TF   LS+CA + A  +G ++  Q    G
Sbjct: 365 IIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMG 424

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
           +G+  F+ NAL+ MY +CG++ +A   F+G+  K VVSW  ++ GY  HG G  A+ +F+
Sbjct: 425 YGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFE 484

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
            M  +G++PD    V VLSACSH GL D+G EYFY M   YG+ P  +HYTCM+DLLGRA
Sbjct: 485 SMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRA 544

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           G+L EA +LI +M  +P  A WGALLGA +IH N EL E A   V K+EP N+G YVLLS
Sbjct: 545 GRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLS 604

Query: 359 NIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD 418
           N+Y+ +       ++R  MR+  ++K PGYS+VE++ ++H F VGD +H +   IY  L+
Sbjct: 605 NLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLE 664

Query: 419 KLENLVQEHDGTKRSD------QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKN 472
           +L+  ++E      +       ++  +EH+   + HSEKLA+AFGI+    G  I VMKN
Sbjct: 665 ELDLKMREEGYVSLTKLVLHDVEEEEKEHM--LKYHSEKLAVAFGILTIPGGRPIRVMKN 722

Query: 473 LRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           LR+C DCH  IK +SKIV R  I+RD+ RFHHF  GFCSC DYW
Sbjct: 723 LRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 150/341 (43%), Gaps = 33/341 (9%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N+L+SGY  N  V EA  +F  M E+    NS++   LL   V  G +       C+
Sbjct: 143 VSWNSLLSGYAQNGYVDEAREVFDNMPEK----NSISWNGLLAAYVHNGRIEEA----CL 194

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             +   D D    NCLM  +V+   +   R LFD++P +  I+WN MISGYAQ G  +  
Sbjct: 195 LFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQA 254

Query: 133 LELYREMKSL---------------GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ----Q 173
             L+ E  +                G+  +A TF   +     +  +++     Q     
Sbjct: 255 RRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMD 314

Query: 174 IQANGFGSNPFLN----NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGH 229
           I    F S P  N    N +I  Y + G++ +AR  FD MP++  VSW AII GY   GH
Sbjct: 315 IARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGH 374

Query: 230 GEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYT 289
            E A+ +F E+ + G   +   F   LS C+     + G +  +G   K G   G     
Sbjct: 375 YEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQ-IHGQAVKMGYGTGCFVGN 433

Query: 290 CMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
            ++ +  + G ++EA +  E  + E D   W  +L     H
Sbjct: 434 ALLAMYFKCGSIDEANDTFEG-IEEKDVVSWNTMLAGYARH 473



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 88/257 (34%), Positives = 121/257 (47%), Gaps = 53/257 (20%)

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320
           + GL D G EYFY M  +Y + P  +HYTCM+DLLGR  +L E                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE----------------- 818

Query: 321 GALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380
           GALLGA +IH N EL E A     K+ P N+G                        MR+ 
Sbjct: 819 GALLGASRIHGNTELGEKAAQMFFKMGPQNSGI---------------------SKMRDV 857

Query: 381 RLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEE 440
            ++K PGYS+ E++ ++H F VG       + + R  + +   ++E D   R  ++  E 
Sbjct: 858 GVQKVPGYSWFEVQNKIHTFSVG-------LFLSRERENI-GFLEELDLKMREREEEKER 909

Query: 441 HLNDTEVHSEKLAIAFGIINTSPGTEIVVMKN-LRICGDCHLFIKLVSKIVDRQFIVRDA 499
            L   +  SE LA A GI+    G    VMK  + +C DC   IK +SKIV R   +RD+
Sbjct: 910 TL---KYLSENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIVGRLITLRDS 966

Query: 500 TRFHHFKSGFCSCKDYW 516
              H F    CSC +YW
Sbjct: 967 ---HRFNESICSCGEYW 980



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 134/300 (44%), Gaps = 56/300 (18%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V YNA+ISGY+ NS  + A +LF +M E+                              
Sbjct: 80  SVSYNAMISGYLRNSKFNLARNLFDQMPER------------------------------ 109

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                    D    N ++T YV+   +   R+LFD +PEK +++WN+++SGYAQNG    
Sbjct: 110 ---------DLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDE 160

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
             E++  M       +++++ G+L++  H G     +E    +  +    +    N L+ 
Sbjct: 161 AREVFDNMPE----KNSISWNGLLAAYVHNGR----IEEACLLFESKSDWDLISWNCLMG 212

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
            + R   L  AR +FD MP +  +SW  +I GY   G    A +LFDE   S  R D   
Sbjct: 213 GFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDE---SPTR-DVFT 268

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           + +++S     G+ D+   +F  M  K  +      Y  M+    +  +++ A EL ESM
Sbjct: 269 WTAMVSGYVQNGMLDEAKTFFDEMPEKNEVS-----YNAMIAGYVQTKKMDIARELFESM 323



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 79  DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYRE 138
           D D    N  ++ +++ G  D    +F+ +P +  +++NAMISGY +N        L+ +
Sbjct: 46  DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQ 105

Query: 139 MKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGN 198
           M    +    V   G + +C  LG      ++  +     +       N+L++ YA+ G 
Sbjct: 106 MPERDLFSWNVMLTGYVRNC-RLGDARRLFDLMPEKDVVSW-------NSLLSGYAQNGY 157

Query: 199 LKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
           + +AR +FD MP K  +SW  ++  Y  +G  E A  LF+
Sbjct: 158 VDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFE 197



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 97/218 (44%), Gaps = 18/218 (8%)

Query: 107 QVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSV 166
           +V +  ++ WN  IS + +NG     L ++  M        +V++  ++S        ++
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPR----RSSVSYNAMISGYLRNSKFNL 98

Query: 167 GLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGI 226
              +  Q+         F  N ++  Y R   L  AR +FD MP K VVSW +++ GY  
Sbjct: 99  ARNLFDQMPERDL----FSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQ 154

Query: 227 HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPE 286
           +G+ + A ++FD M +     +  ++  +L+A  H G  ++    F   K+ + L     
Sbjct: 155 NGYVDEAREVFDNMPEK----NSISWNGLLAAYVHNGRIEEACLLFES-KSDWDLIS--- 206

Query: 287 HYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
            + C++    R  +L +A  L + M V  D   W  ++
Sbjct: 207 -WNCLMGGFVRKKKLGDARWLFDKMPVR-DAISWNTMI 242



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 78/199 (39%), Gaps = 38/199 (19%)

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI- 245
           N  I+ + R G+   A  +F+ MPR++ VS+ A+I GY  +    +A  LFD+M +  + 
Sbjct: 53  NKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLF 112

Query: 246 --------------------------RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279
                                       D  ++ S+LS  +  G  D+  E F  M  K 
Sbjct: 113 SWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKN 172

Query: 280 GLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELA 339
            +      +  ++      G++ EA  L ES   + D   W  L+G     K +  A   
Sbjct: 173 SIS-----WNGLLAAYVHNGRIEEACLLFESK-SDWDLISWNCLMGGFVRKKKLGDARWL 226

Query: 340 FGKV-----IKLEPMNTGY 353
           F K+     I    M +GY
Sbjct: 227 FDKMPVRDAISWNTMISGY 245


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/524 (41%), Positives = 314/524 (59%), Gaps = 22/524 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVD 59
           +FDES   T     + A++SGYV N ++ EA + F +M E+  V  N++    +    +D
Sbjct: 257 LFDES--PTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMD 314

Query: 60  PGY-LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
               L+  M C  I          S  N ++T Y + G +   RK FD +P++  ++W A
Sbjct: 315 IARELFESMPCRNI----------SSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAA 364

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           +I+GYAQ+G     L ++ E+K  G   +  TF   LS+CA + A  +G ++  Q    G
Sbjct: 365 IIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMG 424

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
           +G+  F+ NAL+ MY +CG++ +A   F+G+  K VVSW  ++ GY  HG G  A+ +F+
Sbjct: 425 YGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFE 484

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
            M  +G++PD    V VLSACSH GL D+G EYFY M   YG+ P  +HYTCM+DLLGRA
Sbjct: 485 SMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRA 544

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           G+L EA +LI +M  +P  A WGALLGA +IH N EL E A   V K+EP N+G YVLLS
Sbjct: 545 GRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLS 604

Query: 359 NIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD 418
           N+Y+ +       ++R  MR+  ++K PGYS+VE++ ++H F VGD +H +   IY  L+
Sbjct: 605 NLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLE 664

Query: 419 KLENLVQEHDGTKRSD------QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKN 472
           +L+  ++E      +       ++  +EH+   + HSEKLA+AFGI+    G  I VMKN
Sbjct: 665 ELDLKMREEGYVSLTKLVLHDVEEEEKEHM--LKYHSEKLAVAFGILTIPGGRPIRVMKN 722

Query: 473 LRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           LR+C DCH  IK +SKIV R  I+RD+ RFHHF  GFCSC DYW
Sbjct: 723 LRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 150/341 (43%), Gaps = 33/341 (9%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N+L+SGY  N  V EA  +F  M E+    NS++   LL   V  G +       C+
Sbjct: 143 VSWNSLLSGYAQNGYVDEAREVFDNMPEK----NSISWNGLLAAYVHNGRIEEA----CL 194

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             +   D D    NCLM  +V+   +   R LFD++P +  I+WN MISGYAQ G  +  
Sbjct: 195 LFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQA 254

Query: 133 LELYREMKSL---------------GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ----Q 173
             L+ E  +                G+  +A TF   +     +  +++     Q     
Sbjct: 255 RRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMD 314

Query: 174 IQANGFGSNPFLN----NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGH 229
           I    F S P  N    N +I  Y + G++ +AR  FD MP++  VSW AII GY   GH
Sbjct: 315 IARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGH 374

Query: 230 GEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYT 289
            E A+ +F E+ + G   +   F   LS C+     + G +  +G   K G   G     
Sbjct: 375 YEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQ-IHGQAVKMGYGTGCFVGN 433

Query: 290 CMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
            ++ +  + G ++EA +  E  + E D   W  +L     H
Sbjct: 434 ALLAMYFKCGSIDEANDTFEG-IEEKDVVSWNTMLAGYARH 473



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 134/300 (44%), Gaps = 56/300 (18%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V YNA+ISGY+ NS  + A +LF +M E+                              
Sbjct: 80  SVSYNAMISGYLRNSKFNLARNLFDQMPER------------------------------ 109

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                    D    N ++T YV+   +   R+LFD +PEK +++WN+++SGYAQNG    
Sbjct: 110 ---------DLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDE 160

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
             E++  M       +++++ G+L++  H G     +E    +  +    +    N L+ 
Sbjct: 161 AREVFDNMPE----KNSISWNGLLAAYVHNGR----IEEACLLFESKSDWDLISWNCLMG 212

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
            + R   L  AR +FD MP +  +SW  +I GY   G    A +LFDE   S  R D   
Sbjct: 213 GFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDE---SPTR-DVFT 268

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           + +++S     G+ D+   +F  M  K  +      Y  M+    +  +++ A EL ESM
Sbjct: 269 WTAMVSGYVQNGMLDEAKTFFDEMPEKNEVS-----YNAMIAGYVQTKKMDIARELFESM 323



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 79  DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYRE 138
           D D    N  ++ +++ G  D    +F+ +P +  +++NAMISGY +N        L+ +
Sbjct: 46  DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQ 105

Query: 139 MKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGN 198
           M    +    V   G + +C  LG      ++  +     +       N+L++ YA+ G 
Sbjct: 106 MPERDLFSWNVMLTGYVRNC-RLGDARRLFDLMPEKDVVSW-------NSLLSGYAQNGY 157

Query: 199 LKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
           + +AR +FD MP K  +SW  ++  Y  +G  E A  LF+
Sbjct: 158 VDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFE 197



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 97/218 (44%), Gaps = 18/218 (8%)

Query: 107 QVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSV 166
           +V +  ++ WN  IS + +NG     L ++  M        +V++  ++S        ++
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRS----SVSYNAMISGYLRNSKFNL 98

Query: 167 GLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGI 226
              +  Q+         F  N ++  Y R   L  AR +FD MP K VVSW +++ GY  
Sbjct: 99  ARNLFDQMPERDL----FSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQ 154

Query: 227 HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPE 286
           +G+ + A ++FD M +     +  ++  +L+A  H G  ++    F   K+ + L     
Sbjct: 155 NGYVDEAREVFDNMPEK----NSISWNGLLAAYVHNGRIEEACLLFES-KSDWDLIS--- 206

Query: 287 HYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
            + C++    R  +L +A  L + M V  D   W  ++
Sbjct: 207 -WNCLMGGFVRKKKLGDARWLFDKMPVR-DAISWNTMI 242



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 78/199 (39%), Gaps = 38/199 (19%)

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI- 245
           N  I+ + R G+   A  +F+ MPR++ VS+ A+I GY  +    +A  LFD+M +  + 
Sbjct: 53  NKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLF 112

Query: 246 --------------------------RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279
                                       D  ++ S+LS  +  G  D+  E F  M  K 
Sbjct: 113 SWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKN 172

Query: 280 GLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELA 339
            +      +  ++      G++ EA  L ES   + D   W  L+G     K +  A   
Sbjct: 173 SIS-----WNGLLAAYVHNGRIEEACLLFESK-SDWDLISWNCLMGGFVRKKKLGDARWL 226

Query: 340 FGKV-----IKLEPMNTGY 353
           F K+     I    M +GY
Sbjct: 227 FDKMPVRDAISWNTMISGY 245


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/513 (41%), Positives = 305/513 (59%), Gaps = 14/513 (2%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
            V + A+I+GY  +   +EA++LF +M++QG+  +++     +  C     L  G   H  
Sbjct: 540  VSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQ 599

Query: 73   CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
                G   D SVGN L+++Y +CG V      FD++  K  I+WN++ISG+AQ+G     
Sbjct: 600  ACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEA 659

Query: 133  LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            L L+ +M   G   ++ TF   +S+ A++    +G ++   I   G  S   ++N LI +
Sbjct: 660  LSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITL 719

Query: 193  YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
            YA+CGN+  A   F  MP K  +SW A++ GY  HGHG  A+ LF++M + G+ P+   F
Sbjct: 720  YAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTF 779

Query: 253  VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            V VLSACSH GL D+G++YF  M+  +GL P PEHY C+VDLLGR+G L+ A   +E M 
Sbjct: 780  VGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMP 839

Query: 313  VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            ++PD  V   LL AC +HKN+++ E A   +++LEP ++  YVLLSN+Y+         R
Sbjct: 840  IQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYAVTGKWGCRDR 899

Query: 373  VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
             R MM++R +KK+PG S++E+   VH F  GD+ H    +IY  L  L  L  E+    +
Sbjct: 900  TRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQKHPNVDKIYEYLRDLNELAAENGYIPQ 959

Query: 433  SDQKNSEEHLNDTE---------VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFI 483
            ++       LND E         +HSEKLAIAFG+++ S  T I V KNLR+CGDCH +I
Sbjct: 960  TNSL-----LNDAERRQKGPTQIIHSEKLAIAFGLLSLSSSTPIHVFKNLRVCGDCHNWI 1014

Query: 484  KLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            K VSKI DR  +VRD+ RFHHFK G CSCKDYW
Sbjct: 1015 KYVSKISDRVIVVRDSYRFHHFKGGICSCKDYW 1047



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 163/322 (50%), Gaps = 2/322 (0%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           T   V +N ++  Y L   ++E+  +F +M+ +G+E N  T   +L  C     + LG  
Sbjct: 435 TENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQ 494

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            H   +K G   +  V + L+ MY K G +D+  K+F ++ EK +++W AMI+GYAQ+  
Sbjct: 495 IHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEK 554

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
               L L++EM+  G+  D + F   +S+CA + A + G ++  Q   +G+  +  + NA
Sbjct: 555 FAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNA 614

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           L+++YARCG ++ A   FD +  K  +SW ++I G+   GH E A+ LF +M K+G   +
Sbjct: 615 LVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEIN 674

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
              F   +SA ++      G +  + M  K G     E    ++ L  + G +++A    
Sbjct: 675 SFTFGPAVSAAANVANVKLGKQ-IHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQF 733

Query: 309 ESMLVEPDGAVWGALLGACKIH 330
             M  E +   W A+L     H
Sbjct: 734 FEM-PEKNEISWNAMLTGYSQH 754



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 155/333 (46%), Gaps = 2/333 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V YN+LISG        +A+ LF KM    ++ + VT+  LL  C   G L +G   H  
Sbjct: 338 VSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSY 397

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G+  D  +   L+ +YVKC  +    + F     + ++ WN M+  Y         
Sbjct: 398 AIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNES 457

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            +++ +M+  G+ P+  T+  +L +C+ L A  +G ++  Q+   GF  N ++++ LI+M
Sbjct: 458 FKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDM 517

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+ G L  A  IF  +  K VVSWTA+I GY  H     A+ LF EM   GI  D   F
Sbjct: 518 YAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGF 577

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S +SAC+     ++G +  +      G          +V L  R G++ +A    + + 
Sbjct: 578 ASAISACAGIQALNQG-QQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIF 636

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345
              D   W +L+       + E A   F ++ K
Sbjct: 637 -SKDNISWNSLISGFAQSGHCEEALSLFSQMSK 668



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 158/320 (49%), Gaps = 2/320 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V + A++SG   +    EAV LF +M   GV         +L  C    +  +G   H 
Sbjct: 236 SVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHG 295

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + +K G  L+  V N L+T+Y + G+     ++F+ + ++  +++N++ISG +Q G +  
Sbjct: 296 LVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDK 355

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            LEL+++M    + PD VT   +LS+C+ +GA  VG +        G  S+  L  AL++
Sbjct: 356 ALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLD 415

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +Y +C ++K A   F     + VV W  ++  YG+  +   + ++F +M   GI P+   
Sbjct: 416 LYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFT 475

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           + S+L  CS     D G E  +    K G Q      + ++D+  + G+L+ AL++    
Sbjct: 476 YPSILRTCSSLRAVDLG-EQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRR- 533

Query: 312 LVEPDGAVWGALLGACKIHK 331
           L E D   W A++     H+
Sbjct: 534 LKEKDVVSWTAMIAGYAQHE 553



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/303 (32%), Positives = 146/303 (48%), Gaps = 12/303 (3%)

Query: 16  NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVK 75
            AL   Y  +   +  ++    M E+GV  NS T L LL  C+  G+   G   H   +K
Sbjct: 37  TALSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILK 96

Query: 76  FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLEL 135
            G   +  +   LM +Y+  G +D    +FD++P + L  WN ++  +    +A  VL L
Sbjct: 97  MGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGL 156

Query: 136 YREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA----NGFGSNPFLNNALIN 191
           +R M    V PD  T+ GVL  C   G   V     ++I A    +G+ ++ F+ N LI+
Sbjct: 157 FRRMLQEKVKPDERTYAGVLRGC---GGGDVPFHCVEKIHARTITHGYENSLFVCNPLID 213

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +Y + G L  A+ +FDG+ ++  VSW A++ G    G  E AV LF +M  SG+ P    
Sbjct: 214 LYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYI 273

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC--MVDLLGRAGQLNEALELIE 309
           F SVLSAC+       G E  +G+  K G     E Y C  +V L  R G    A ++  
Sbjct: 274 FSSVLSACTKVEFYKVG-EQLHGLVLKQGF--SLETYVCNALVTLYSRLGNFIPAEQVFN 330

Query: 310 SML 312
           +ML
Sbjct: 331 AML 333



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 108/462 (23%), Positives = 207/462 (44%), Gaps = 59/462 (12%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE         C+N ++  +V   +    + LF +M ++ V+ +  T   +L  C   
Sbjct: 125 VFDE--MPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGG 182

Query: 61  GYLWLGMCCHCI------CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLI 114
              +     HC+       +  G +    V N L+ +Y K G ++  +K+FD + ++  +
Sbjct: 183 DVPF-----HCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSV 237

Query: 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
           +W AM+SG +Q+G     + L+ +M + GV P    F  VLS+C  +  + VG ++   +
Sbjct: 238 SWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLV 297

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
              GF    ++ NAL+ +Y+R GN   A  +F+ M ++  VS+ ++I G    G+ + A+
Sbjct: 298 LKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKAL 357

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF-YGMK----------------- 276
           +LF +M    ++PD     S+LSACS  G    G ++  Y +K                 
Sbjct: 358 ELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLY 417

Query: 277 ---------NKYGLQPGPEH---YTCMVDLLGRAGQLNEALELIESML---VEPDGAVWG 321
                    +++ L    E+   +  M+   G    LNE+ ++   M    +EP+   + 
Sbjct: 418 VKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYP 477

Query: 322 ALLGACKIHKNVELAELAFGKVIKLE-PMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380
           ++L  C   + V+L E    +V+K     N     +L ++Y++   LD  +++      R
Sbjct: 478 SILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIF-----R 532

Query: 381 RLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLEN 422
           RLK+    S+  +       + G   H +  E   +  ++++
Sbjct: 533 RLKEKDVVSWTAM-------IAGYAQHEKFAEALNLFKEMQD 567


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/511 (40%), Positives = 311/511 (60%), Gaps = 9/511 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + ++ISGY+ N   +EA+ L+ KM E G   + VTM  L+  C +   L +GM  H  
Sbjct: 146 VVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSH 205

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             +  + +   +G+ L+ MY KCG +   R++FD++ +K +  W+A+I GY +N  +T  
Sbjct: 206 IREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEA 265

Query: 133 LELYREMKS-LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
           L+L+RE+     + P+ VT + V+S+CA LG    G  V   I     G +  LNN+LI+
Sbjct: 266 LQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLID 325

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           M+++CG++  A+ IFD M  K ++SW +++ G+ +HG G  A+  F  M  + ++PD   
Sbjct: 326 MFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEIT 385

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+ VL+ACSHAGL  +G + FY ++  YG++   EHY CMVDLL RAG L EA E I  M
Sbjct: 386 FIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVM 445

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            ++PDGA+WG++LGAC+++ N+EL E A   ++KLEP N G Y+LLSNIY++ +  + + 
Sbjct: 446 PLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVK 505

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD------KLENLVQ 425
           +VR +M E+ ++K PG S V +    H F+ GD +H +  EI  ML       KL   V 
Sbjct: 506 KVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLAGYVA 565

Query: 426 EHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
           +      +   N +E       HSEKLA+ +G++ +  G  IV++KNLR+C DCH  IKL
Sbjct: 566 DTSEVLLNIDDNKKEE--SVSQHSEKLALCYGLLKSEIGGRIVILKNLRVCSDCHTLIKL 623

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           VSKI  RQ  +RD  RFHHFK G CSC+DYW
Sbjct: 624 VSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 171/343 (49%), Gaps = 12/343 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEI-NSVTMLCLLPICVDPGYLWLGMCCHC 71
           + +N+++  +V +++   A+  + +M E+   + +  T   LL  C       +G   H 
Sbjct: 44  LTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHG 103

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             VK+ L  D  +   L+ MY  CG +   R LF+++  +  + W +MISGY +N     
Sbjct: 104 QVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNE 163

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L LY++M+  G  PD VT   ++S+CA L    VG+++   I+         L +AL+N
Sbjct: 164 ALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVN 223

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML-KSGIRPDGT 250
           MYA+CG+LK AR +FD +  K V +W+A+I GY  +     A+QLF E+   S +RP+  
Sbjct: 224 MYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEV 283

Query: 251 AFVSVLSACSHAGLTDKGL---EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
             ++V+SAC+  G  + G    +Y    +  + +         ++D+  + G ++ A  +
Sbjct: 284 TILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLN----NSLIDMFSKCGDIDAAKRI 339

Query: 308 IESMLVEPDGAVWGALLGACKIH--KNVELAELAFGKVIKLEP 348
            +SM  + D   W +++    +H      LA+    +   L+P
Sbjct: 340 FDSMSYK-DLISWNSMVNGFALHGLGREALAQFRLMQTTDLQP 381



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 129/263 (49%), Gaps = 18/263 (6%)

Query: 86  NCLMTMYVKCGS--VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM--KS 141
           N L+   +  GS  V Y   +F    E  ++TWN+M+  +  + +    L+ Y EM  +S
Sbjct: 14  NKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERS 73

Query: 142 LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKK 201
             V PD  TF  +L  CA L    VG  +  Q+      S+ ++   L+NMYA CG+LK 
Sbjct: 74  RNV-PDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKS 132

Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261
           AR +F+ M  +  V WT++I GY  +     A+ L+ +M + G  PD     +++SAC  
Sbjct: 133 ARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSAC-- 190

Query: 262 AGLTDKGLEYFYGMK-----NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPD 316
           A L D G+    GMK      +  ++      + +V++  + G L  A ++ +  L + D
Sbjct: 191 AELKDLGV----GMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDK-LSDKD 245

Query: 317 GAVWGALL-GACKIHKNVELAEL 338
              W AL+ G  K +++ E  +L
Sbjct: 246 VYAWSALIFGYVKNNRSTEALQL 268


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/510 (39%), Positives = 320/510 (62%), Gaps = 9/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A++S Y  N    EA+ +F +MR+  V+ + V ++ +L        L  G   H  
Sbjct: 188 VSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHAS 247

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K GL+ +  +   L TMY KCG V   + LFD++    LI WNAMISGYA+NG A   
Sbjct: 248 VMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDA 307

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           ++L+ EM +  V PD ++    +S+CA +G+      +++ +  + +  + F+++ALI+M
Sbjct: 308 IDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDM 367

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           +A+CG+++ AR++FD    + VV W+A+I GYG+HG    A+ L+  M + G+ P+   F
Sbjct: 368 FAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTF 427

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + +L AC+H+G+  +G  +F  M + + + P  +HY C++DLLGRAG L++A E+I+ M 
Sbjct: 428 LGLLIACNHSGMVREGWWFFNRMAD-HKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMP 486

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           V+P   VWGALL ACK H++VEL + A  ++  ++P NTG+YV LSN+Y+ AR  D +  
Sbjct: 487 VQPGVTVWGALLSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAE 546

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR+ M+E+ L KD G S+VE++GR+  F VGD++H +  EI R ++ +E+ ++E  G   
Sbjct: 547 VRVRMKEKGLNKDVGCSWVEVRGRLEGFRVGDKSHPRYEEIERQVEWIESRLKE--GGFV 604

Query: 433 SDQKNSEEHLNDTEV------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
           +++  S   LND E       HSE++ IA+G+I+T  GT + + KNLR C +CH   KL+
Sbjct: 605 ANKDASLHDLNDEEAEETLCSHSERITIAYGLISTPQGTTLRITKNLRACVNCHAATKLI 664

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SK+V R+ +VRD  RFHHFK G CSC DYW
Sbjct: 665 SKLVGREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 160/318 (50%), Gaps = 4/318 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NA+I GY  N+   +A+ ++ KM+   V  +S T   LL  C    +L +G   H    
Sbjct: 87  WNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVF 146

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFD--QVPEKGLITWNAMISGYAQNGLATHV 132
           + G + D  V N L+ +Y KC  +   R +F+   +PE+ +++W A++S YAQNG     
Sbjct: 147 RLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEA 206

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           LE++ +M+ + V PD V  V VL++   L     G  +   +   G  + P L  +L  M
Sbjct: 207 LEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTM 266

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG +  A+ +FD M    ++ W A+I GY  +G  + A+ LF EM+   +RPD  + 
Sbjct: 267 YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISI 326

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S +SAC+  G  ++   +     ++   +      + ++D+  + G +  A  + +  L
Sbjct: 327 TSAISACAQVGSLEQA-RWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTL 385

Query: 313 VEPDGAVWGALLGACKIH 330
            + D  VW A++    +H
Sbjct: 386 -DRDVVVWSAMIVGYGLH 402



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 126/232 (54%), Gaps = 4/232 (1%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
           G + + R++FD +P   +  WNA+I GY++N      L +Y +M+   V PD+ TF  +L
Sbjct: 67  GDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLL 126

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG--MPRKT 213
            +C  L    +G  V  Q+   GF ++ F+ N LI +YA+C  L  AR +F+G  +P +T
Sbjct: 127 KACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERT 186

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
           +VSWTAI+  Y  +G    A+++F +M K  ++PD  A VSVL+A +     ++G    +
Sbjct: 187 IVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQG-RSIH 245

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
               K GL+  P+    +  +  + GQ+  A  L + M   P+  +W A++ 
Sbjct: 246 ASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKM-KSPNLILWNAMIS 296



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 88/214 (41%), Gaps = 39/214 (18%)

Query: 172 QQIQAN----GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH 227
           +QI A     G   + FL   LI+  +  G++  AR +FD +PR  V  W AII GY  +
Sbjct: 38  RQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRN 97

Query: 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC---SHAGL------------------TD 266
            H + A+ ++ +M  + + PD   F  +L AC   SH  +                    
Sbjct: 98  NHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQ 157

Query: 267 KGLEYFYGMKNKYGLQ-------PGPEH----YTCMVDLLGRAGQLNEALELIESML--- 312
            GL   Y    + G         P PE     +T +V    + G+  EALE+   M    
Sbjct: 158 NGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMD 217

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
           V+PD     ++L A    +++E        V+K+
Sbjct: 218 VKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKM 251


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/514 (39%), Positives = 312/514 (60%), Gaps = 28/514 (5%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICV------DPGYLWLGMC 68
           + A++SGY  N ++ EA  +F  M ++    N+V+   ++   V      +   L+  M 
Sbjct: 327 WTAIVSGYAQNGMLEEAKRVFDAMPDK----NAVSWNAMMAAYVQRRMMEEAKELFDAMP 382

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
           C  +          +  N ++T Y + G +D  R +F  +P+K  ++W AM++ Y+Q G 
Sbjct: 383 CRNV----------ASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGF 432

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
           +   L+L++EM   G   +   F  VLS+CA + A   G+++  ++   G+G   F+ NA
Sbjct: 433 SEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNA 492

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           L+ MY +CG++++A + F+ M  + VVSW  +I GY  HG G+ A+++FD M K+  +PD
Sbjct: 493 LLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPD 552

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
               V VL+ACSH+GL +KG+ YFY M   +G+   PEHYTCM+DLLGRAG+L+EA+ L+
Sbjct: 553 DITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLM 612

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
           + M  EPD  +WGALLGA +IH+N EL   A  K+ +LEP N G YVLLSNIY+ +    
Sbjct: 613 KDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWR 672

Query: 369 GIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHD 428
            + ++R +M ER +KK PG+S++E++ +VH F VGD  H +  +IY  L+ L+  +++  
Sbjct: 673 DVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPEREDIYAFLEDLDIRMKKAG 732

Query: 429 GTKRSD------QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLF 482
               +D      ++  +EH+   + HSEKLA+A+GI+   PG  I V+KNLR+C DCH  
Sbjct: 733 YVSATDMVLHDVEEEEKEHM--LKYHSEKLAVAYGILKIPPGRPIRVIKNLRVCRDCHTA 790

Query: 483 IKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            K +S I  R  I+RD+ RFHHF+ G CSC DYW
Sbjct: 791 FKCISAIEGRLIILRDSNRFHHFRDGSCSCGDYW 824



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 121/248 (48%), Gaps = 4/248 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V + A+++ Y       E + LF +M   G  +N     C+L  C D   L  GM  H 
Sbjct: 417 AVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHS 476

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K G  +   VGN L+ MY KCGS++     F+++ E+ +++WN MI+GYA++G    
Sbjct: 477 RLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKE 536

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN-GFGSNPFLNNALI 190
            LE++  M+     PD +T VGVL++C+H G    G+     +  + G  + P     +I
Sbjct: 537 ALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMI 596

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++  R G L +A  +   MP       W A++G   IH + E+     +++ +  + P+ 
Sbjct: 597 DLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFE--LEPEN 654

Query: 250 TAFVSVLS 257
                +LS
Sbjct: 655 AGMYVLLS 662



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 142/324 (43%), Gaps = 44/324 (13%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
           T  YN +++GY  N  + +A+S F  + R      N++                LG+   
Sbjct: 138 TSTYNTMLAGYAANGRLPQALSFFRSIPRPDSFSYNTLLHA-------------LGVSSS 184

Query: 71  CICVKFGLD----LDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQN 126
              V+   D     D    N +++ +   G V   R  FD  PEK  ++WN M++ Y +N
Sbjct: 185 LADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRN 244

Query: 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ-QIQANGFGSNPFL 185
           G      EL+          D+ T    +S  A +  +    ++E+ Q   N       +
Sbjct: 245 GRIQEARELF----------DSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVV 294

Query: 186 N-NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
           + N +++ YAR G++ +AR +FD  P + V +WTAI+ GY  +G  E A ++FD M    
Sbjct: 295 SWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAM---- 350

Query: 245 IRPDGTA--FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
             PD  A  + ++++A     + ++  E F  M  +         +  M+    +AG L+
Sbjct: 351 --PDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCR-----NVASWNTMLTGYAQAGMLD 403

Query: 303 EALELIESMLVEPDGAVWGALLGA 326
           EA   I  M+ + D   W A+L A
Sbjct: 404 EA-RAIFGMMPQKDAVSWAAMLAA 426



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 141/333 (42%), Gaps = 52/333 (15%)

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
           C+    D++    N  +T +++ G V    +LF  +P +   T+N M++GYA NG     
Sbjct: 98  CITGKPDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQA 157

Query: 133 LELYREMKSLGVCPDAVTF------VGVLSSCAHLGA--------HSVGLEVEQQIQANG 178
           L  +R +      PD+ ++      +GV SS A + A         SV   V     AN 
Sbjct: 158 LSFFRSIPR----PDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANH 213

Query: 179 ---------FGSNPFLN----NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYG 225
                    F   P  +    N ++  Y R G +++AR +FD       +SW A++ GY 
Sbjct: 214 GLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYV 273

Query: 226 IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF--YGMKNKYGLQP 283
                E A ++F++M +     D  ++ +++S  +  G   +    F    +++ +    
Sbjct: 274 QRSQIEEAQKMFNKMPQR----DVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFT--- 326

Query: 284 GPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG-- 341
               +T +V    + G L EA  + ++M  + +   W A++ A    + +E A+  F   
Sbjct: 327 ----WTAIVSGYAQNGMLEEAKRVFDAM-PDKNAVSWNAMMAAYVQRRMMEEAKELFDAM 381

Query: 342 ---KVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
               V     M TGY    + +  EAR + G+M
Sbjct: 382 PCRNVASWNTMLTGY--AQAGMLDEARAIFGMM 412


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/509 (40%), Positives = 308/509 (60%), Gaps = 5/509 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +I+ YV N    EAV LFG++++ G++ N +T + +L +      L  G   H +
Sbjct: 274 VTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHEL 333

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             + G D D  V   LM++Y +C +     K+F  +  K +ITW  M   YAQNG     
Sbjct: 334 VKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEA 393

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+L++EM+  G  P + T V VL +CAHL A   G ++   I  NGF     +  ALINM
Sbjct: 394 LQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVETALINM 453

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CG + +AR++F+ M ++ ++ W +++G Y  HG+ +  +QLF++M   G + D  +F
Sbjct: 454 YGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKADAVSF 513

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           VSVLSA SH+G    G +YF  M   + + P PE Y C+VDLLGRAG++ EA++++  + 
Sbjct: 514 VSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLS 573

Query: 313 -VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
              PDG +W  LLGAC+ H   + A+ A  +V++ +P ++G YV+LSN+Y+ A + DG+ 
Sbjct: 574 GCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVN 633

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH---D 428
           R+R +MR R +KK+PG S +E+  RVH F+ GDR+H +   IY  LD L + ++      
Sbjct: 634 RMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGYIP 693

Query: 429 GTKRSDQKNSEEHLNDTEV-HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
            TK       +E   D    HSE+LAIAFG+++T PGT + V+KNLR+C DCH   K +S
Sbjct: 694 DTKMILHDVEDERKEDMLFYHSERLAIAFGLMSTPPGTPLRVIKNLRVCSDCHTATKYIS 753

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K+  R+ +VRD  RFH+FK G CSCKDYW
Sbjct: 754 KLRGREILVRDTHRFHNFKDGRCSCKDYW 782



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 163/319 (51%), Gaps = 4/319 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+I+  V +   + A  L+ +M+  GV  N +T+  +     DP YL  G   + +
Sbjct: 173 VSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSL 232

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
                ++ D  V N  M M+   G +   R+LF+ + ++ ++TWN +I+ Y QN      
Sbjct: 233 VSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEA 292

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + L+  ++  G+  + +TFV +L+    L + + G  + + ++  G+  +  +  AL+++
Sbjct: 293 VRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSL 352

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y RC    +A  IF  M  K V++WT +   Y  +G  + A+QLF EM   G RP     
Sbjct: 353 YGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATL 412

Query: 253 VSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           V+VL  C+H     KG + + + ++N + ++   E  T ++++ G+ G++ EA  + E M
Sbjct: 413 VAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVE--TALINMYGKCGKMAEARSVFEKM 470

Query: 312 LVEPDGAVWGALLGACKIH 330
             + D  VW ++LGA   H
Sbjct: 471 -AKRDILVWNSMLGAYAQH 488



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 151/323 (46%), Gaps = 3/323 (0%)

Query: 46  NSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLF 105
           ++   + LL  C     +  G   H      G + +  V   L+ MY +CGSV   +++F
Sbjct: 4   DTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVF 63

Query: 106 DQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHS 165
           + +  K +  W  MI  Y Q G     L ++ +M+   V P  VT+V +L++CA   +  
Sbjct: 64  EILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLK 123

Query: 166 VGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYG 225
            G+E+  QI   GF  + F+  ALINMY +CG+++ A   F  +  + VVSWTA+I    
Sbjct: 124 DGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACV 183

Query: 226 IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
            H    +A  L+  M   G+ P+     +V +A        +G ++ Y + +   ++   
Sbjct: 184 QHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEG-KFIYSLVSSRVMESDV 242

Query: 286 EHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345
                 +++ G AG L +A  L E M V+ D   W  ++     ++N   A   FG++ +
Sbjct: 243 RVMNSAMNMFGNAGLLGDARRLFEDM-VDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQ 301

Query: 346 LE-PMNTGYYVLLSNIYSEARNL 367
                N   +VL+ N+Y+   +L
Sbjct: 302 DGIKANDITFVLMLNVYTSLTSL 324



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 156/375 (41%), Gaps = 42/375 (11%)

Query: 14  CYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
            +  +I  Y        A+ +F +M+E+ V    VT + +L  C     L  GM  H   
Sbjct: 73  AWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQI 132

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           ++ G + D  VG  L+ MY KCGSV      F ++  + +++W AMI+   Q+       
Sbjct: 133 LQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALAR 192

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
            LYR M+  GV P+ +T   V ++       S G  +   + +    S+  + N+ +NM+
Sbjct: 193 WLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMF 252

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
              G L  AR +F+ M  + VV+W  +I  Y  + +   AV+LF  + + GI+ +   FV
Sbjct: 253 GNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFV 312

Query: 254 SVLSACSHAGLT-----------------DKGLEYFYGMKNKYGLQPGPEH--------- 287
            +L+   +  LT                 D+ +     + + YG    P           
Sbjct: 313 LMLNV--YTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMG 370

Query: 288 ------YTCMVDLLGRAGQLNEALELIESMLVE---PDGAVWGALLGACKIHKNVELAEL 338
                 +T M     + G   EAL+L + M +E   P  A   A+L  C       LA L
Sbjct: 371 SKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTC-----AHLAAL 425

Query: 339 AFGKVIKLEPMNTGY 353
             G+ I    +  G+
Sbjct: 426 QKGRQIHSHIIENGF 440



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 95/198 (47%), Gaps = 2/198 (1%)

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           PD   FV +L  C+       G  V   +   GF  N  +   LI MYA+CG++ +A+ +
Sbjct: 3   PDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQV 62

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           F+ + RK V +WT +IG Y   G  + A+ +F +M +  + P    +V++L+AC+     
Sbjct: 63  FEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESL 122

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
             G+E  +G   + G +      T ++++  + G +  A +  +  L   D   W A++ 
Sbjct: 123 KDGME-IHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKR-LEHRDVVSWTAMIA 180

Query: 326 ACKIHKNVELAELAFGKV 343
           AC  H    LA   + ++
Sbjct: 181 ACVQHDQFALARWLYRRM 198


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/543 (39%), Positives = 320/543 (58%), Gaps = 43/543 (7%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           + A+I GY L  L+SE+ + + +MR  GV   S T   L   C     + LG   H   +
Sbjct: 110 WTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTI 169

Query: 75  KFG-LDLDFSVGNCLMTMYVKCGSVDYGRK------------------------------ 103
             G    D  VGN ++ +YVKCG +   RK                              
Sbjct: 170 LIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESAS 229

Query: 104 -LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162
            LFD +P K ++ W AM++GYAQNG     LE +++M+ +G+  D VT  GV+S+CA LG
Sbjct: 230 GLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLG 289

Query: 163 AHSVGLEVEQQIQANGFGS--NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           A      +    + +GFG   N  + +ALI+MY++CG+  +A  +F+ M  + V S++++
Sbjct: 290 AVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSM 349

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           I GY +HG    A+QLF +MLK+ IRP+   F+ +LSACSHAGL ++G + F  M+  +G
Sbjct: 350 ILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFG 409

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           + P P+HY CMVDLLGRAG L EAL+L+++M +EP+G VWGALLGAC+IH N ++A++A 
Sbjct: 410 VAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAA 469

Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELK-GRVHL 399
            ++ KLEP   G Y+LLSNIY+ A   + + ++R ++RE+  KK+PG S+ E K G +H 
Sbjct: 470 NELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHD 529

Query: 400 FMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTE------VHSEKLA 453
           F  GD  H ++ EI + L +L   ++ H    + +  ++   L D E       HSEKLA
Sbjct: 530 FFAGDTTHPRSSEIRQALKQLIERLRSHG--YKPNLGSAPYDLTDDEKERILMSHSEKLA 587

Query: 454 IAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCK 513
           +A+G++ T  G  I +MKN+RIC DCH  +   S+I  R+ IVRD  RFHHF +G CSC 
Sbjct: 588 LAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCG 647

Query: 514 DYW 516
           ++W
Sbjct: 648 NFW 650



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 135/254 (53%), Gaps = 16/254 (6%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+++GY  N    EA+  F KM++ G+E + VT+  ++  C       LG   H  
Sbjct: 241 VAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQ-----LGAVKHAN 295

Query: 73  CVK-------FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
            ++       FG   +  VG+ L+ MY KCGS D   K+F+ + E+ + ++++MI GYA 
Sbjct: 296 WIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAM 355

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA-NGFGSNPF 184
           +G A   L+L+ +M    + P+ VTF+G+LS+C+H G    G ++  +++   G   +P 
Sbjct: 356 HGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPD 415

Query: 185 LNNALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFDEMLKS 243
               ++++  R G L++A  +   MP +     W A++G   IHG+ ++A    +E+ K 
Sbjct: 416 HYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFK- 474

Query: 244 GIRPDGTAFVSVLS 257
            + P+G     +LS
Sbjct: 475 -LEPNGIGNYILLS 487



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 91/179 (50%), Gaps = 5/179 (2%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           Y   +F QV       W AMI GYA  GL +     Y  M+  GV P + TF  +  +C 
Sbjct: 94  YPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACG 153

Query: 160 HLGAHSVGLEVE-QQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWT 218
                 +G +V  Q I   GF S+ ++ N++I++Y +CG L  AR +FD M  + VVSWT
Sbjct: 154 AALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWT 213

Query: 219 AIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
            +I  Y  +G  E A  LFD++       D  A+ ++++  +  G   + LEYF  M++
Sbjct: 214 ELIVAYAKYGDMESASGLFDDLPSK----DMVAWTAMVTGYAQNGRPKEALEYFQKMQD 268


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/510 (41%), Positives = 313/510 (61%), Gaps = 6/510 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +  +I+G+  N   S A+ LF +++ +G++++ + +  +L  C     +      H 
Sbjct: 449 VVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHS 508

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             ++ GL  D  + N ++ +Y +CG+VDY  ++F+ +  K +++W +MIS Y  NGLA  
Sbjct: 509 YIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANE 567

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            LEL+  MK  GV PD+++ V +LS+ A L A   G E+   +   GF     L + L++
Sbjct: 568 ALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVD 627

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYARCG L+K+R +F+ +  K +V WT++I  YG+HG G  A+ LF  M    I PD  A
Sbjct: 628 MYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIA 687

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           FV+VL ACSH+GL ++G  +   MK +Y L+P PEHY C+VDLLGRA  L EA + ++ M
Sbjct: 688 FVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGM 747

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            VEP   VW ALLGAC+IH N EL E+A  K+++++P N G YVL+SN+YS  R    + 
Sbjct: 748 EVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVE 807

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL-ENLVQEHDGT 430
            VRM M+   LKK+PG S++E+  +VH FM  D++H Q+ EIY  L ++ E L +E    
Sbjct: 808 XVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYV 867

Query: 431 KRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
            ++         EE +     HSE+LAIA+G++ T  G  + + KNLR+CGDCH F KL+
Sbjct: 868 AQTKFVLHNAKEEEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLI 927

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SK  +R+ ++RDA RFHHFK G CSC D W
Sbjct: 928 SKFFERELVMRDANRFHHFKGGVCSCGDVW 957



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/319 (31%), Positives = 174/319 (54%), Gaps = 3/319 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T+ +N+++SG+V N L  EA+  + +MR+ G + + V ++ ++      G    GM  H 
Sbjct: 348 TISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHA 407

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K GLD D  VGN L+ MY K  S+ Y   +FD++P+K +++W  +I+G+AQNG  + 
Sbjct: 408 YAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSR 467

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            LEL+RE++  G+  D +    +L +C+ L   S   E+   I   G  S+  L N +++
Sbjct: 468 ALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGL-SDLVLQNGIVD 526

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +Y  CGN+  A  +F+ +  K VVSWT++I  Y  +G    A++LF  M ++G+ PD  +
Sbjct: 527 VYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSIS 586

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            VS+LSA +      KG E  +G   + G        + +VD+  R G L ++  +  + 
Sbjct: 587 LVSILSAAASLSALKKGKE-IHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVF-NF 644

Query: 312 LVEPDGAVWGALLGACKIH 330
           +   D  +W +++ A  +H
Sbjct: 645 IRNKDLVLWTSMINAYGMH 663



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 108/352 (30%), Positives = 175/352 (49%), Gaps = 31/352 (8%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +N++IS Y  N    EA+ LFG+M++  +  N+ T +  L  C D  ++  GM  H 
Sbjct: 247 VVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHA 306

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K    ++  V N L+ MY + G +     +F  + +   I+WN+M+SG+ QNGL   
Sbjct: 307 TVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHE 366

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L+ Y EM+  G  PD V  + ++++ A  G    G+++      NG  S+  + N+L++
Sbjct: 367 ALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVD 426

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+  ++K    IFD MP K VVSWT II G+  +G    A++LF E+   GI  D   
Sbjct: 427 MYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMM 486

Query: 252 FVSVLSACS-----------HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
             S+L ACS           H+ +  KGL       +   LQ G      +VD+ G  G 
Sbjct: 487 ISSILLACSGLKLISSVKEIHSYIIRKGL-------SDLVLQNG------IVDVYGECGN 533

Query: 301 LNEALELIESMLVE-PDGAVWGALLGACKIHKNVELAELAFGKVIK---LEP 348
           ++ A  + E  L+E  D   W +++ +C +H  +    L    ++K   +EP
Sbjct: 534 VDYAARMFE--LIEFKDVVSWTSMI-SCYVHNGLANEALELFHLMKETGVEP 582



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 166/319 (52%), Gaps = 6/319 (1%)

Query: 10  HLTV-CYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           H T+  +NA+I  YV N     ++ L+ +MR  G+ +++ T  C+L  C        G  
Sbjct: 142 HKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAE 201

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK-GLITWNAMISGYAQNG 127
            H + +K G      V N ++ MY KC  ++  R+LFD++PEK  +++WN+MIS Y+ NG
Sbjct: 202 VHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNG 261

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
            +   L L+ EM+   + P+  TFV  L +C        G+ +   +  + +  N F+ N
Sbjct: 262 QSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVAN 321

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           ALI MYAR G + +A  IF  M     +SW +++ G+  +G    A+Q + EM  +G +P
Sbjct: 322 ALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKP 381

Query: 248 DGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           D  A +S+++A + +G T  G++ + Y MKN  GL    +    +VD+  +   + + ++
Sbjct: 382 DLVAVISIIAASARSGNTLHGMQIHAYAMKN--GLDSDLQVGNSLVDMYAKFCSM-KYMD 438

Query: 307 LIESMLVEPDGAVWGALLG 325
            I   + + D   W  ++ 
Sbjct: 439 CIFDKMPDKDVVSWTTIIA 457



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/239 (34%), Positives = 123/239 (51%), Gaps = 3/239 (1%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L+ MY KCG +    KLFD +P K + TWNAMI  Y  NG     LELYREM+  G+  D
Sbjct: 120 LVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLD 179

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
           A TF  +L +C  L     G EV       G+ S  F+ N+++ MY +C +L  AR +FD
Sbjct: 180 ACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFD 239

Query: 208 GMPRKT-VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD 266
            MP K  VVSW ++I  Y  +G    A++LF EM K+ + P+   FV+ L AC  +    
Sbjct: 240 RMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIK 299

Query: 267 KGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           +G+ + +    K            ++ +  R G++ EA  +  +M  + D   W ++L 
Sbjct: 300 QGM-FIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNM-DDWDTISWNSMLS 356



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 85/178 (47%), Gaps = 2/178 (1%)

Query: 150 TFVGVLSSCAHLGAHSVGLEVE-QQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208
            +  VL  C    A S G +V    I +N   ++ FL+  L+ MY +CG L  A  +FDG
Sbjct: 80  AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDG 139

Query: 209 MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
           MP KT+ +W A+IG Y  +G    +++L+ EM  SGI  D   F  +L AC        G
Sbjct: 140 MPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYG 199

Query: 269 LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
            E  +G+  K G          +V +  +   LN A +L + M  + D   W +++ A
Sbjct: 200 AE-VHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISA 256


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/537 (41%), Positives = 321/537 (59%), Gaps = 29/537 (5%)

Query: 6   IKSTHLTVCYN-ALISGYVLNSLVS--------------EAVSLFGKMREQGVEINSVTM 50
           I STH T+ ++   +  ++ N+L+                 +S+F +MR  GV+ +  T 
Sbjct: 8   ISSTHPTLHFSHPTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTF 67

Query: 51  LCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE 110
             LL     P  L LG   H   ++FGL +D  V   L++MY   G VD  R LF  +PE
Sbjct: 68  PFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPE 127

Query: 111 KGLITWNAMISGYAQNGLATHVLELYREMKSLGVC---PDAVTFVGVLSSCAHLGAHSVG 167
           + +I+W+ MI+GY + G     L L+REM+ LGV    P+  T  GVL++C  LGA   G
Sbjct: 128 RNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHG 187

Query: 168 LEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM-PRKTVVSWTAIIGGYGI 226
                 I   G   +  L  ALI+MYA+CG+++KA  +F  + P K V++W+A+I G  +
Sbjct: 188 KWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAM 247

Query: 227 HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPE 286
           HG  E  V LF +M+  G+RP+   F++V  AC H GL  +G +Y   M   Y + P  +
Sbjct: 248 HGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQ 307

Query: 287 HYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
           HY CMVDL GRAG++ EA  +++SM +EPD  VWGALL   ++H ++E  ELA  K+I+L
Sbjct: 308 HYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIEL 367

Query: 347 EPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRN 406
           EP N+G YVLLSN+Y++    + +  VR +M    +KK PG S +E+ G +H F VGD +
Sbjct: 368 EPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDS 427

Query: 407 HHQTVEIYRMLDK-LENL-VQEHDGTKRS-----DQKNSEEHLNDTEVHSEKLAIAFGII 459
           H +T +I+ ML++ LE L V+ + G  +      D++  E  L+   +HSEKLA+A+G +
Sbjct: 428 HPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELALS---LHSEKLALAYGFL 484

Query: 460 NTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            TSPGT I ++KNLRIC DCH+ IK++SK+ DR+ IVRD  RFHHF  G CSC+DYW
Sbjct: 485 KTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQGLCSCRDYW 541


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/508 (39%), Positives = 307/508 (60%), Gaps = 4/508 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +I+G   N L  E + +  +M    ++ +S T+  +LP+  +   +  G   H  
Sbjct: 205 VSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGC 264

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ GLD D  V + L+ MY KC  V    ++F  + E+  I+WN++I+G  QNGL    
Sbjct: 265 SIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEG 324

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L  +R+M    + P + +F  ++ +CAHL    +G ++   I  NGF  N F+ ++L++M
Sbjct: 325 LRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDM 384

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CGN++ A+ IFD M  + +VSWTA+I G  +HG    A++LF++M   GI+P+  AF
Sbjct: 385 YAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAF 444

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           ++VL+ACSH GL D+  +YF  M   +G+ PG EHY  + DLLGRAG+L EA + I  M 
Sbjct: 445 MAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMH 504

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           + P G++W  LL AC++H N+++AE    ++++++P NTG Y+LL+NIYS AR      +
Sbjct: 505 IGPTGSIWATLLSACRVHXNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAK 564

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH----D 428
            R  MR   ++K P  S++E+K +V+ FM GD +H    +I   ++ L  L+++     D
Sbjct: 565 WRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPD 624

Query: 429 GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
            ++       E+       HSE+LAI FGIINT  G  I V KNLR+C DCH   K +SK
Sbjct: 625 TSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISK 684

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           IV R+ +VRD +RFHHFK+G CSC DYW
Sbjct: 685 IVGREIVVRDNSRFHHFKNGTCSCGDYW 712



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 156/351 (44%), Gaps = 34/351 (9%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            + + ++I  Y  + L  +++  F  M   G+  +      +L  C     L LG   H 
Sbjct: 71  ALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHG 130

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCG--------------------------------SVD 99
             ++ GLD D   GN LM MY K                                  S D
Sbjct: 131 YIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSED 190

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
             RK+F+ +PEK L++WN +I+G A+NGL    L + REM    + PD+ T   VL   A
Sbjct: 191 SVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIA 250

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
                S G E+       G  ++ ++ ++LI+MYA+C  +  +  +F  +  +  +SW +
Sbjct: 251 ENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNS 310

Query: 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279
           II G   +G  +  ++ F +ML + I+P   +F S++ AC+H      G +  +G   + 
Sbjct: 311 IIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQ-LHGYITRN 369

Query: 280 GLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           G        + +VD+  + G +  A ++ + M +  D   W A++  C +H
Sbjct: 370 GFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMGCALH 419



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 111/257 (43%), Gaps = 34/257 (13%)

Query: 103 KLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162
           +LF+ +     + W ++I  Y  +GL    L  +  M + G+ PD   F  VL SCA L 
Sbjct: 61  RLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120

Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA-------------------- 202
             ++G  +   I   G   + +  NAL+NMY++   L+++                    
Sbjct: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180

Query: 203 ------------RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
                       R IF+ MP K +VSW  II G   +G  E  +++  EM  + ++PD  
Sbjct: 181 VRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSF 240

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
              SVL   +      +G E  +G   + GL       + ++D+  +  ++ ++  +  +
Sbjct: 241 TLSSVLPLIAENVDISRGKE-IHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVF-T 298

Query: 311 MLVEPDGAVWGALLGAC 327
           +L E DG  W +++  C
Sbjct: 299 LLTERDGISWNSIIAGC 315


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/509 (41%), Positives = 310/509 (60%), Gaps = 7/509 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+I+  V + L  +AV  +  M  +G+  + +T++ +L  C   G+L LG+  H I
Sbjct: 366 VSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEI 425

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K GL     V N L+ MY KC  VD   ++F  +  K +++W ++I G   N  +   
Sbjct: 426 AIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEA 485

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L  +R+MK   + P++VT + VLS+CA +GA   G E+       G G + FL NA+++M
Sbjct: 486 LLFFRQMKE-SMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDM 544

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y RCG    A   F+   +K V +W  ++ GY   G  ++AV+LFD+ML+  I PD   F
Sbjct: 545 YVRCGRKVPALNQFNSQ-KKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITF 603

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +S+L ACS +G+  +GLEYF  MKNKY L P  +HY C+VD+LGRAGQL++A + I+ M 
Sbjct: 604 ISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMP 663

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           + PD A+WGALL AC+IH+NVEL E+A  +V + +  + GYY+LL N+Y+   N D + +
Sbjct: 664 IRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSK 723

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR +MRER L  DPG S+VE+KG+VH F+ GD +H Q+ EI  +LD   + ++E+     
Sbjct: 724 VRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKENGFGNL 783

Query: 433 SDQKNSEEHLNDTEV---HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKI 489
                SE   +  ++   HSE+ AIAFG+INT+PG  I V KNL +C  CH  +K +S I
Sbjct: 784 KSSFTSEIESSRADIFCGHSERQAIAFGLINTAPGMPIWVTKNLYMCHSCHNMVKFISTI 843

Query: 490 VDRQFIVRDATRFHHFKSGFCSCKD--YW 516
           V R+  VRD   +HHFK G CSC D  YW
Sbjct: 844 VRREISVRDVEEYHHFKDGVCSCGDEGYW 872



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/358 (33%), Positives = 182/358 (50%), Gaps = 5/358 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N L+ GY       EA++L+ +M    +  N  T   +L  C     +  G   H   +
Sbjct: 166 WNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVI 225

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           +FG + D  VGN L+TMYVKCG +   R LFD++P++  I+WNAMISGY +NG     LE
Sbjct: 226 RFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLE 285

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+  M+ L V PD +T   V S+C  L    +G  V   +  + FG +  +NN+LI MY+
Sbjct: 286 LFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYS 345

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
             G L++A  +F  M  K VVSWTA+I     H     AV+ +  M   GI PD    VS
Sbjct: 346 SLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVS 405

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VLSAC+  G  D G+   + +  K GL         ++D+  +   ++ ALE+  + +  
Sbjct: 406 VLSACACIGHLDLGIR-LHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRN-ISG 463

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            +   W +L+   +I+ N     L F + +K E M      L+S + + AR +  +MR
Sbjct: 464 KNVVSWTSLILGLRIN-NRSFEALLFFRQMK-ESMKPNSVTLISVLSACAR-IGALMR 518



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 104/348 (29%), Positives = 173/348 (49%), Gaps = 8/348 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD+  K   ++  +NA+ISGY  N    E + LF  MRE  V+ + +TM  +   C   
Sbjct: 255 LFDKMPKRDRIS--WNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELL 312

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
               LG   H   VK     D S+ N L+ MY   G ++    +F ++  K +++W AMI
Sbjct: 313 DNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMI 372

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +    + L    +E Y+ M+  G+ PD +T V VLS+CA +G   +G+ + +     G  
Sbjct: 373 ASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLV 432

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S+  ++N+LI+MY++C  +  A  +F  +  K VVSWT++I G  I+     A+  F +M
Sbjct: 433 SHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM 492

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
            K  ++P+    +SVLSAC+  G   +G E + + ++   G      +   ++D+  R G
Sbjct: 493 -KESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPN--AILDMYVRCG 549

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE 347
           +   AL    S   + D   W  LL         +LA   F K+++LE
Sbjct: 550 RKVPALNQFNSQ--KKDVTAWNILLTGYAQQGQAKLAVELFDKMLELE 595



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 157/317 (49%), Gaps = 28/317 (8%)

Query: 28  VSEAVSLFGKMREQGVEINSVTMLCLLPIC-----VDPG---YLWLGMCCHCICVKFGLD 79
           + +A+     M E  +E+     + LL +C      D G   Y  +     C+CV+    
Sbjct: 78  LEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVR---- 133

Query: 80  LDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM 139
               +GN L++M+V+ G++     +F ++ E+ + +WN ++ GYA+ G     L LY  M
Sbjct: 134 ----LGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRM 189

Query: 140 KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNL 199
               + P+  TF  VL +CA +   + G E+   +   GF S+  + NALI MY +CG++
Sbjct: 190 LWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDI 249

Query: 200 KKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC 259
             AR +FD MP++  +SW A+I GY  +G G   ++LF  M +  + PD     +V SAC
Sbjct: 250 SNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASAC 309

Query: 260 SHAGLTD-----KGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
               L D     +G+ + Y +K+++G      +   ++ +    G+L EA E + S +  
Sbjct: 310 E---LLDNERLGRGV-HGYVVKSEFGGDISMNN--SLIQMYSSLGRLEEA-ETVFSRMES 362

Query: 315 PDGAVWGALLGACKIHK 331
            D   W A++ +   HK
Sbjct: 363 KDVVSWTAMIASLVSHK 379


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/509 (41%), Positives = 310/509 (60%), Gaps = 7/509 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+I+  V + L  +AV  +  M  +G+  + +T++ +L  C   G+L LG+  H I
Sbjct: 366 VSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEI 425

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K GL     V N L+ MY KC  VD   ++F  +  K +++W ++I G   N  +   
Sbjct: 426 AIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEA 485

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L  +R+MK   + P++VT + VLS+CA +GA   G E+       G G + FL NA+++M
Sbjct: 486 LLFFRQMKE-SMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDM 544

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y RCG    A   F+   +K V +W  ++ GY   G  ++AV+LFD+ML+  I PD   F
Sbjct: 545 YVRCGRKVPALNQFNSQ-KKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITF 603

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +S+L ACS +G+  +GLEYF  MKNKY L P  +HY C+VD+LGRAGQL++A + I+ M 
Sbjct: 604 ISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMP 663

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           + PD A+WGALL AC+IH+NVEL E+A  +V + +  + GYY+LL N+Y+   N D + +
Sbjct: 664 IRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSK 723

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR +MRER L  DPG S+VE+KG+VH F+ GD +H Q+ EI  +LD   + ++E+     
Sbjct: 724 VRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKENGFGNL 783

Query: 433 SDQKNSEEHLNDTEV---HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKI 489
                SE   +  ++   HSE+ AIAFG+INT+PG  I V KNL +C  CH  +K +S I
Sbjct: 784 KSSFTSEIESSRADIFCGHSERQAIAFGLINTAPGMPIWVXKNLYMCHSCHNMVKFISTI 843

Query: 490 VDRQFIVRDATRFHHFKSGFCSCKD--YW 516
           V R+  VRD   +HHFK G CSC D  YW
Sbjct: 844 VRREISVRDVEEYHHFKDGVCSCGDEGYW 872



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/358 (33%), Positives = 182/358 (50%), Gaps = 5/358 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N L+ GY       EA++L+ +M    +  N  T   +L  C     +  G   H   +
Sbjct: 166 WNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVI 225

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           +FG + D  VGN L+TMYVKCG +   R LFD++P++  I+WNAMISGY +NG     LE
Sbjct: 226 RFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLE 285

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+  M+ L V PD +T   V S+C  L    +G  V   +  + FG +  +NN+LI MY+
Sbjct: 286 LFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYS 345

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
             G L++A  +F  M  K VVSWTA+I     H     AV+ +  M   GI PD    VS
Sbjct: 346 SLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVS 405

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VLSAC+  G  D G+   + +  K GL         ++D+  +   ++ ALE+  + +  
Sbjct: 406 VLSACACIGHLDLGIR-LHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRN-ISG 463

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            +   W +L+   +I+ N     L F + +K E M      L+S + + AR +  +MR
Sbjct: 464 KNVVSWTSLILGLRIN-NRSFEALLFFRQMK-ESMKPNSVTLISVLSACAR-IGALMR 518



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 104/348 (29%), Positives = 173/348 (49%), Gaps = 8/348 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD+  K   ++  +NA+ISGY  N    E + LF  MRE  V+ + +TM  +   C   
Sbjct: 255 LFDKMPKRDRIS--WNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELL 312

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
               LG   H   VK     D S+ N L+ MY   G ++    +F ++  K +++W AMI
Sbjct: 313 DNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMI 372

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +    + L    +E Y+ M+  G+ PD +T V VLS+CA +G   +G+ + +     G  
Sbjct: 373 ASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLV 432

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S+  ++N+LI+MY++C  +  A  +F  +  K VVSWT++I G  I+     A+  F +M
Sbjct: 433 SHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM 492

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
            K  ++P+    +SVLSAC+  G   +G E + + ++   G      +   ++D+  R G
Sbjct: 493 -KESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPN--AILDMYVRCG 549

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE 347
           +   AL    S   + D   W  LL         +LA   F K+++LE
Sbjct: 550 RKVPALNQFNSQ--KKDVTAWNILLTGYAQQGQAKLAVELFDKMLELE 595



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 157/317 (49%), Gaps = 28/317 (8%)

Query: 28  VSEAVSLFGKMREQGVEINSVTMLCLLPIC-----VDPG---YLWLGMCCHCICVKFGLD 79
           + +A+     M E  +E+     + LL +C      D G   Y  +     C+CV+    
Sbjct: 78  LEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVR---- 133

Query: 80  LDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM 139
               +GN L++M+V+ G++     +F ++ E+ + +WN ++ GYA+ G     L LY  M
Sbjct: 134 ----LGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRM 189

Query: 140 KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNL 199
               + P+  TF  VL +CA +   + G E+   +   GF S+  + NALI MY +CG++
Sbjct: 190 LWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDI 249

Query: 200 KKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC 259
             AR +FD MP++  +SW A+I GY  +G G   ++LF  M +  + PD     +V SAC
Sbjct: 250 SNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASAC 309

Query: 260 SHAGLTD-----KGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
               L D     +G+ + Y +K+++G      +   ++ +    G+L EA E + S +  
Sbjct: 310 E---LLDNERLGRGV-HGYVVKSEFGGDISMNN--SLIQMYSSLGRLEEA-ETVFSRMES 362

Query: 315 PDGAVWGALLGACKIHK 331
            D   W A++ +   HK
Sbjct: 363 KDVVSWTAMIASLVSHK 379


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/508 (41%), Positives = 311/508 (61%), Gaps = 6/508 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +N LI GY        A SL+ +MR  G VE ++ T   L+        + LG   H + 
Sbjct: 88  WNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVV 147

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           ++ G      V N L+ +Y  CG V    K+FD++PEK L+ WN++I+G+A+NG     L
Sbjct: 148 IRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEAL 207

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
            LY EM S G+ PD  T V +LS+CA +GA ++G  V   +   G   N   +N L+++Y
Sbjct: 208 ALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLY 267

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS-GIRPDGTAF 252
           ARCG +++A+ +FD M  K  VSWT++I G  ++G G+ A++LF  M  + G+ P    F
Sbjct: 268 ARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITF 327

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           V +L ACSH G+  +G EYF  M+ +Y ++P  EH+ CMVDLL RAGQ+ +A E I+SM 
Sbjct: 328 VGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMP 387

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           ++P+  +W  LLGAC +H + +LAE A  ++++LEP ++G YVLLSN+Y+  +    + +
Sbjct: 388 MQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQK 447

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           +R  M    +KK PG+S VE+  RVH F++GD++H Q+  IY  L ++   ++      +
Sbjct: 448 IRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQ 507

Query: 433 SDQ----KNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
                     EE  N    HSEK+AIAF +I+T   + I V+KNLR+C DCHL IKLVSK
Sbjct: 508 ISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSK 567

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           + +R+ +VRD +RFHHFK+G CSC+DYW
Sbjct: 568 VYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++I+G+  N    EA++L+ +M  +G++ +  T++ LL  C   G L LG   H  
Sbjct: 188 VAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVY 247

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K GL  +    N L+ +Y +CG V+  + LFD++ +K  ++W ++I G A NG     
Sbjct: 248 MIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEA 307

Query: 133 LELYREMKSL-GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--AL 189
           +EL++ M+S  G+ P  +TFVG+L +C+H G    G E  ++++   +   P + +   +
Sbjct: 308 IELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREE-YKIEPRIEHFGCM 366

Query: 190 INMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVA 233
           +++ AR G +KKA      MP +  VV W  ++G   +HG  ++A
Sbjct: 367 VDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLA 411


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/506 (41%), Positives = 306/506 (60%), Gaps = 4/506 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           ++ ++ GY           +F ++   G  ++  +   ++  C D   L  G   HCI +
Sbjct: 119 WSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITL 178

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K GLD    V   L+ MY +C  V+   ++F ++ ++ L TW  MI   A++G+    L 
Sbjct: 179 KCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLV 238

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
            +  M++ G+ PD V  V V+ +CA LGA +    +   I   G+  +  L  A+I+MYA
Sbjct: 239 FFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYA 298

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG+++ AR IFD M  + V++W+A+I  YG HG GE A++LF  ML+SGI P+   FVS
Sbjct: 299 KCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVS 358

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           +L ACSHAGL ++G  +F  M ++YG+ P  +HYTCMVDLLGRAG+L+EALE+IE M VE
Sbjct: 359 LLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVE 418

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
            D  +WGALLGAC+IH++++LAE     ++KL+    G+YVLLSNIY+ A   + + + R
Sbjct: 419 KDEVLWGALLGACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKWEDMAKTR 478

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML----DKLENLVQEHDGT 430
            +M +  L+K PG +++E+  +++ F VGD+ H ++ EIY+ML    +KLE      D  
Sbjct: 479 DLMTKGGLRKIPGRTWIEVGEKLYQFGVGDKTHPRSNEIYKMLKRLGEKLEVAGYHPDTN 538

Query: 431 KRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIV 490
                 + E        HSEKLAIAFG++    G  I + KNLR+CGDCH F K VS I 
Sbjct: 539 DVLYDVDEEVKQGLLYSHSEKLAIAFGLLVLPQGHPIRITKNLRVCGDCHTFCKFVSLIE 598

Query: 491 DRQFIVRDATRFHHFKSGFCSCKDYW 516
            +  IVRDA RFHHFK G CSC+DYW
Sbjct: 599 QKTIIVRDAKRFHHFKEGVCSCRDYW 624



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 125/269 (46%), Gaps = 9/269 (3%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140
           + +V N L+ MYV+ G+++  ++LFD + ++   +W+ ++ GYA+ G       ++RE+ 
Sbjct: 84  NLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGGYAKVGNFFSCFWMFRELL 143

Query: 141 SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
             G   D  +   V+ +C  L     G  +       G     F+   L++MYARC  ++
Sbjct: 144 RSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYGHFVCATLVDMYARCKVVE 203

Query: 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
            A  IF  M ++ + +WT +IG     G    ++  FD M   GI PD  A V+V+ AC+
Sbjct: 204 DAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACA 263

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320
             G  +K  +  +   N  G        T M+D+  + G +  A  + + M V  +   W
Sbjct: 264 KLGAMNKA-KAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVR-NVITW 321

Query: 321 GALLGACKIHKNVELAELAFGKVIKLEPM 349
            A++ A   H   E       K ++L PM
Sbjct: 322 SAMIAAYGYHGQGE-------KALELFPM 343



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 103/222 (46%), Gaps = 12/222 (5%)

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF 206
           D   F   L SC +L       +V  QI  NG   N  + N L+ MY   G L+ A+ +F
Sbjct: 52  DTKRFRSSLLSCRNLFQVR---QVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELF 108

Query: 207 DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD 266
           DGM ++   SW+ I+GGY   G+      +F E+L+SG   D  +   V+ AC    L D
Sbjct: 109 DGMSKRHPYSWSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACR--DLKD 166

Query: 267 -KGLEYFYGMKNKYGLQPGPEHYTC--MVDLLGRAGQLNEALELIESMLVEPDGAVWGAL 323
            K     + +  K GL  G  H+ C  +VD+  R   + +A ++   M  + D A W  +
Sbjct: 167 LKCGRLIHCITLKCGLDYG--HFVCATLVDMYARCKVVEDAHQIFVKMW-KRDLATWTVM 223

Query: 324 LGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR 365
           +GA      V +  L F   ++ + +      L++ +Y+ A+
Sbjct: 224 IGALA-ESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAK 264


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/526 (41%), Positives = 311/526 (59%), Gaps = 19/526 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +    T+ +  LI GY  +    EA+ LF ++  + V  N  T   +L  C   
Sbjct: 95  LFDEMPERN--TISFVTLIQGYAESVRFLEAIELFVRLHRE-VLPNQFTFASVLQACATM 151

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L LG   HC  +K GL  D  V N LM +Y KCG ++   +LF + P +  +TWN +I
Sbjct: 152 EGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVI 211

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            G+ Q G     L L+  M    V    VT+   L +CA L A   GL++        F 
Sbjct: 212 VGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFD 271

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            +  + NALI+MYA+CG++K AR +FD M ++  VSW A+I GY +HG G  A+++FD+M
Sbjct: 272 KDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKM 331

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            ++ ++PD   FV VLSAC++AGL D+G  YF  M   +G++P  EHYTCMV LLGR G 
Sbjct: 332 QETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGH 391

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L++A++LI+ +  +P   VW ALLGAC IH ++EL  ++  +V+++EP +   +VLLSN+
Sbjct: 392 LDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNM 451

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+ A+  D +  VR  M+ + +KK+PG S++E +G VH F VGD +H +   I  ML+ L
Sbjct: 452 YATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWL 511

Query: 421 ENLVQEHDGTKRSDQ-KNSEEHLNDTE---------VHSEKLAIAFGIINTSPGTEIVVM 470
                 H  TK++    N    L D E         VHSE+LA++FGII T  G+ I +M
Sbjct: 512 ------HMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIM 565

Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KNLRIC DCH  IK +SK+V R+ +VRD  RFHHF+ G CSC DYW
Sbjct: 566 KNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 611



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 141/287 (49%), Gaps = 3/287 (1%)

Query: 44  EINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRK 103
           E NS      L  C+       G   HC  +K G  LD    N L+ MYVK   +    K
Sbjct: 35  EFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASK 94

Query: 104 LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163
           LFD++PE+  I++  +I GYA++      +EL+  +    V P+  TF  VL +CA +  
Sbjct: 95  LFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHR-EVLPNQFTFASVLQACATMEG 153

Query: 164 HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGG 223
            ++G ++   +   G  S+ F++NAL+++YA+CG ++ +  +F   P +  V+W  +I G
Sbjct: 154 LNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVG 213

Query: 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP 283
           +   G GE A++LF  ML+  ++     + S L AC+     + GL+  + +  K     
Sbjct: 214 HVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQ-IHSLTVKTTFDK 272

Query: 284 GPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
                  ++D+  + G + +A  L+  ++ + D   W A++    +H
Sbjct: 273 DIVVTNALIDMYAKCGSIKDA-RLVFDLMNKQDEVSWNAMISGYSMH 318


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/510 (41%), Positives = 313/510 (61%), Gaps = 6/510 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +  +I+G+  N   S A+ LF +++ +G++++ + +  +L  C     +      H 
Sbjct: 485 VVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHS 544

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             ++ GL  D  + N ++ +Y +CG+VDY  ++F+ +  K +++W +MIS Y  NGLA  
Sbjct: 545 YIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANE 603

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            LEL+  MK  GV PD+++ V +LS+ A L A   G E+   +   GF     L + L++
Sbjct: 604 ALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVD 663

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYARCG L+K+R +F+ +  K +V WT++I  YG+HG G  A+ LF  M    I PD  A
Sbjct: 664 MYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIA 723

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           FV+VL ACSH+GL ++G  +   MK +Y L+P PEHY C+VDLLGRA  L EA + ++ M
Sbjct: 724 FVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGM 783

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            VEP   VW ALLGAC+IH N EL E+A  K+++++P N G YVL+SN+Y+  R    + 
Sbjct: 784 EVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVE 843

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL-ENLVQEHDGT 430
            VRM M+   LKK+PG S++E+  +VH FM  D++H Q+ EIY  L ++ E L +E    
Sbjct: 844 EVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYV 903

Query: 431 KRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
            ++         EE +     HSE+LAIA+G++ T  G  + + KNLR+CGDCH F KL+
Sbjct: 904 AQTKFVLHNAKEEEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLI 963

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SK  +R+ ++RDA RFHHFK G CSC D W
Sbjct: 964 SKFFERELVMRDANRFHHFKGGVCSCGDVW 993



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/319 (31%), Positives = 174/319 (54%), Gaps = 3/319 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T+ +N+++SG+V N L  EA+  + +MR+ G + + V ++ ++      G    GM  H 
Sbjct: 384 TISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHA 443

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K GLD D  VGN L+ MY K  S+ Y   +FD++P+K +++W  +I+G+AQNG  + 
Sbjct: 444 YAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSR 503

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            LEL+RE++  G+  D +    +L +C+ L   S   E+   I   G  S+  L N +++
Sbjct: 504 ALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGL-SDLVLQNGIVD 562

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +Y  CGN+  A  +F+ +  K VVSWT++I  Y  +G    A++LF  M ++G+ PD  +
Sbjct: 563 VYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSIS 622

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            VS+LSA +      KG E  +G   + G        + +VD+  R G L ++  +  + 
Sbjct: 623 LVSILSAAASLSALKKGKE-IHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVF-NF 680

Query: 312 LVEPDGAVWGALLGACKIH 330
           +   D  +W +++ A  +H
Sbjct: 681 IRNKDLVLWTSMINAYGMH 699



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 108/352 (30%), Positives = 175/352 (49%), Gaps = 31/352 (8%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +N++IS Y  N    EA+ LFG+M++  +  N+ T +  L  C D  ++  GM  H 
Sbjct: 283 VVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHA 342

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K    ++  V N L+ MY + G +     +F  + +   I+WN+M+SG+ QNGL   
Sbjct: 343 TVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHE 402

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L+ Y EM+  G  PD V  + ++++ A  G    G+++      NG  S+  + N+L++
Sbjct: 403 ALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVD 462

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+  ++K    IFD MP K VVSWT II G+  +G    A++LF E+   GI  D   
Sbjct: 463 MYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMM 522

Query: 252 FVSVLSACS-----------HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
             S+L ACS           H+ +  KGL       +   LQ G      +VD+ G  G 
Sbjct: 523 ISSILLACSGLKLISSVKEIHSYIIRKGL-------SDLVLQNG------IVDVYGECGN 569

Query: 301 LNEALELIESMLVE-PDGAVWGALLGACKIHKNVELAELAFGKVIK---LEP 348
           ++ A  + E  L+E  D   W +++ +C +H  +    L    ++K   +EP
Sbjct: 570 VDYAARMFE--LIEFKDVVSWTSMI-SCYVHNGLANEALELFHLMKETGVEP 618



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 166/319 (52%), Gaps = 6/319 (1%)

Query: 10  HLTV-CYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           H T+  +NA+I  YV N     ++ L+ +MR  G+ +++ T  C+L  C        G  
Sbjct: 178 HKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAE 237

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK-GLITWNAMISGYAQNG 127
            H + +K G      V N ++ MY KC  ++  R+LFD++PEK  +++WN+MIS Y+ NG
Sbjct: 238 VHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNG 297

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
            +   L L+ EM+   + P+  TFV  L +C        G+ +   +  + +  N F+ N
Sbjct: 298 QSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVAN 357

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           ALI MYAR G + +A  IF  M     +SW +++ G+  +G    A+Q + EM  +G +P
Sbjct: 358 ALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKP 417

Query: 248 DGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           D  A +S+++A + +G T  G++ + Y MKN  GL    +    +VD+  +   + + ++
Sbjct: 418 DLVAVISIIAASARSGNTLNGMQIHAYAMKN--GLDSDLQVGNSLVDMYAKFCSM-KYMD 474

Query: 307 LIESMLVEPDGAVWGALLG 325
            I   + + D   W  ++ 
Sbjct: 475 CIFDKMPDKDVVSWTTIIA 493



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/239 (34%), Positives = 123/239 (51%), Gaps = 3/239 (1%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L+ MY KCG +    KLFD +P K + TWNAMI  Y  NG     LELYREM+  G+  D
Sbjct: 156 LVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLD 215

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
           A TF  +L +C  L     G EV       G+ S  F+ N+++ MY +C +L  AR +FD
Sbjct: 216 ACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFD 275

Query: 208 GMPRKT-VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD 266
            MP K  VVSW ++I  Y  +G    A++LF EM K+ + P+   FV+ L AC  +    
Sbjct: 276 RMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIK 335

Query: 267 KGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           +G+ + +    K            ++ +  R G++ EA  +  +M  + D   W ++L 
Sbjct: 336 QGM-FIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNM-DDWDTISWNSMLS 392



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 85/178 (47%), Gaps = 2/178 (1%)

Query: 150 TFVGVLSSCAHLGAHSVGLEVE-QQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208
            +  VL  C    A S G +V    I +N   ++ FL+  L+ MY +CG L  A  +FDG
Sbjct: 116 AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDG 175

Query: 209 MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
           MP KT+ +W A+IG Y  +G    +++L+ EM  SGI  D   F  +L AC        G
Sbjct: 176 MPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCG 235

Query: 269 LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
            E  +G+  K G          +V +  +   LN A +L + M  + D   W +++ A
Sbjct: 236 AE-VHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISA 292


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/535 (40%), Positives = 314/535 (58%), Gaps = 29/535 (5%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQ----GVEINSVTMLCLLPI 56
           +FD   +  H    ++AL+SGY  +     A++L+ +M+E+    G + N  T    L  
Sbjct: 117 LFDRMPQRDHFA--WSALVSGYTRHGQPEAALALYRRMQEEPGNDGAD-NEFTASSALAA 173

Query: 57  CVDPGYLWLGMCCHCICVKFGLDL---DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL 113
                    G   HC  V+ G+D    D  + + L  MY KCG VD  R++FD++P +  
Sbjct: 174 AAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDA 233

Query: 114 ITWNAMISGYAQNGLATHVLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
           ++W AM+  Y   G       L+  M ++ GV P+  T+ GVL +CA     S G +V  
Sbjct: 234 VSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQVHG 293

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
           ++  +G G + F  +AL+ MY++CG++  A  +F+ M +  +VSWTA+I GY  +G  E 
Sbjct: 294 RMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEE 353

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
           A++ FD  L+SGI+PD   FV VLSAC+HAGL DKGLE F+ +K +Y ++   +HY C++
Sbjct: 354 ALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVI 413

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTG 352
           DLL R+GQ   A ++I +M V+P+  +W +LLG C+IHKNV LA  A   + ++EP N  
Sbjct: 414 DLLSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPENPA 473

Query: 353 YYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVE 412
            YV L+NIY+     D +  VR +M  + + K P  S++E+  RVH+F+VGD++H +  E
Sbjct: 474 TYVTLANIYASVGLFDEVEDVRRIMESKGITKMPASSWIEVGRRVHVFLVGDKSHPKADE 533

Query: 413 IYRMLDKLE-NLVQE----------HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINT 461
           IY +L KL   +V+E          HD          E+   D   HSE+LA+AFGII T
Sbjct: 534 IYALLKKLYVKMVEEGYVADIEFVLHD-------VEDEQKEQDIGYHSERLAVAFGIIAT 586

Query: 462 SPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
             G+ I V KNLRICGDCH  IKL+S+IV R  IVRD+ RFHHFK G CSC+DYW
Sbjct: 587 PEGSPIKVFKNLRICGDCHAAIKLISQIVQRDIIVRDSNRFHHFKDGICSCRDYW 641



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 129/267 (48%), Gaps = 11/267 (4%)

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL---GVCPDAVTFVGVLSS 157
            R+LFD++P++    W+A++SGY ++G     L LYR M+         +  T    L++
Sbjct: 114 ARELFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRRMQEEPGNDGADNEFTASSALAA 173

Query: 158 CAHLGAHSVGLEVEQQIQANGF---GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTV 214
            A       G E+   +   G    G +  L +AL +MYA+CG +  AR +FD MP +  
Sbjct: 174 AAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDA 233

Query: 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKS-GIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
           VSWTA++  Y   G G    +LF  ML++ G+RP+   +  VL AC+   +   G +  +
Sbjct: 234 VSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQ-VH 292

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNV 333
           G   K G        + ++ +  + G +  A+ + E+M  +PD   W A++     +   
Sbjct: 293 GRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAM-AKPDLVSWTAVISGYAQNGQP 351

Query: 334 ELAELAFGKVIK--LEPMNTGYYVLLS 358
           E A   F   ++  ++P +  +  +LS
Sbjct: 352 EEALRYFDMFLRSGIKPDHVTFVGVLS 378



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 186 NNALINMYARCG-NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           +N LI+  +R   +L  AR +FD MP++   +W+A++ GY  HG  E A+ L+  M
Sbjct: 97  HNTLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRRM 152


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/521 (40%), Positives = 318/521 (61%), Gaps = 21/521 (4%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +NA+I+GY  N    EA+ LF +M E  G+  NS TM  ++P CV  G        H   
Sbjct: 368 WNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFV 427

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           VK GLD D  V N LM MY + G +D  +++F ++ ++ L+TWN +I+GY  +      L
Sbjct: 428 VKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDAL 487

Query: 134 ELYREMKSL-----------GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN 182
            +  +M+ L            + P+++T + +L SCA L A + G E+      N   ++
Sbjct: 488 LMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATD 547

Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
             + +AL++MYA+CG L+ +R +FD +P + V++W  I+  YG+HG+ + A+ +   M+ 
Sbjct: 548 VAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMV 607

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
            G++P+   F+SV +ACSH+G+ ++GL+ FY MK  YG++P  +HY C+VDLLGRAG++ 
Sbjct: 608 QGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVK 667

Query: 303 EALELIESMLVEPDGA-VWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY 361
           EA +LI  +    D A  W +LLGAC+IH N+E+ E+A   +I+LEP    +YVLL+NIY
Sbjct: 668 EAYQLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIY 727

Query: 362 SEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLE 421
           S A        VR  M+ + ++K+PG S++E    VH F+ GD +H Q+ ++   L+ L 
Sbjct: 728 SSAGLWYKATEVRRNMKAQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLRGYLETLW 787

Query: 422 NLVQEHDGTKRSD--QKNSEEHLNDTEV----HSEKLAIAFGIINTSPGTEIVVMKNLRI 475
             +++      +     N EE  ++ E+    HSEKLAIAFGI+NTSPGT I V KNLR+
Sbjct: 788 ERMRKEGYIPDTSCVLHNVEE--DEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRV 845

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           C DCHL  K +SK+VDR+ I+RD  RFHHFK+G CSC DYW
Sbjct: 846 CNDCHLATKFISKVVDREIILRDVRRFHHFKNGTCSCGDYW 886



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 160/352 (45%), Gaps = 10/352 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD- 59
           VFD    S    V +N+LIS          A+  F  M ++ VE +S T++ +   C + 
Sbjct: 151 VFDRI--SERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNF 208

Query: 60  --PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWN 117
             P  L +G   H   ++ G +L+  + N L+ MY K G +   + L      + L+TWN
Sbjct: 209 PMPEGLLMGKQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWN 267

Query: 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
            ++S   QN      LE  REM   GV PD  T   VL +C+HL     G E+      N
Sbjct: 268 TVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKN 327

Query: 178 G-FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
           G    N F+ +AL++MY  C  +     +FDGM  + +  W A+I GY  + + E A+ L
Sbjct: 328 GSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLL 387

Query: 237 FDEMLKS-GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295
           F EM +S G+  + T    V+ AC  +G   K  E  +G   K GL         ++D+ 
Sbjct: 388 FIEMEESAGLLANSTTMAGVVPACVRSGAFSKK-EAIHGFVVKRGLDRDRFVQNALMDMY 446

Query: 296 GRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE 347
            R G+++ A  +   M  + D   W  ++      +  E A L   K+  LE
Sbjct: 447 SRLGKIDIAKRIFGKM-EDRDLVTWNTIITGYVFSERHEDALLMLHKMQILE 497



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 153/340 (45%), Gaps = 8/340 (2%)

Query: 6   IKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWL 65
           I  +H    +  L+   V ++L+ EAV  +  M   G++ ++     LL    D   + L
Sbjct: 52  ISQSHSPEWWIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDL 111

Query: 66  GMCCHCICVKFGLDLD-FSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYA 124
           G   H    KFG  +D  +V N L+ +Y KCG      K+FD++ E+  ++WN++IS   
Sbjct: 112 GKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLC 171

Query: 125 QNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGS--- 181
                   LE +R M    V P + T V V  +C++      GL + +Q+ A G      
Sbjct: 172 SFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPE-GLLMGKQVHAYGLRKGEL 230

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           N F+ N L+ MY + G L  ++ +      + +V+W  ++     +     A++   EM+
Sbjct: 231 NSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMV 290

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
             G+ PDG    SVL ACSH  +   G E + Y +KN   L       + +VD+     Q
Sbjct: 291 LEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNG-SLDENSFVGSALVDMYCNCKQ 349

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           +     + + M     G +W A++     ++  E A L F
Sbjct: 350 VLSGCRVFDGMFDRKIG-LWNAMITGYAQNEYDEEALLLF 388


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/553 (39%), Positives = 316/553 (57%), Gaps = 42/553 (7%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE +      V YN ++S Y    L  EA+++  +M +QG   + VTML  +      
Sbjct: 289 LFDECVDRN--LVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQL 346

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCG------------------------ 96
             L+ G  CH   ++ GL+   S+GN ++ MY+KCG                        
Sbjct: 347 VDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLT 406

Query: 97  -------SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
                   V+   ++F+Q+PE+  + WN MISG  Q  L    +EL+REM+  G+  D V
Sbjct: 407 AGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRV 466

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
           T +G+ S+C +LGA  +   V   I+ NG   +  LN AL++M+ARCG+ + A  +F+ M
Sbjct: 467 TMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKM 526

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
             + V +WTA IG   + G+GE A  LF++ML  G++PD   FV VL+ACSH G  ++GL
Sbjct: 527 TERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGL 586

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
             F  M++ +G+ P  EHY CMVDLLGRAG L EA +LI+SM +EP+  VWG+LL AC++
Sbjct: 587 HIFSLMED-HGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRV 645

Query: 330 HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYS 389
           HKNVE+A  A  ++ +L P   G +VLLSNIY+ A     + RVR+ +RE+ ++K PG S
Sbjct: 646 HKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSS 705

Query: 390 YVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEV-- 447
            V++ G +H F  GD +H +   I  ML ++    +  D     D  N    +++ E   
Sbjct: 706 SVQVNGVIHEFTSGDESHPEMTHIALMLQEMN--CRFSDAGHIPDLSNVLLDVDEQEKEY 763

Query: 448 ----HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFH 503
               HSEKLAIAFG+I T     I V+KNLR+C DCH F K+ S I +R+ IVRD  RFH
Sbjct: 764 LLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKMASIIYNREIIVRDNNRFH 823

Query: 504 HFKSGFCSCKDYW 516
            F+ G CSC DYW
Sbjct: 824 FFRQGLCSCCDYW 836



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 171/348 (49%), Gaps = 12/348 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +F E ++S       N+LI GY    L  EA+ L+ +M   GV  N  T   +L  C   
Sbjct: 85  LFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKI 144

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
                G+  H   VK GL+ D  + NCL+  Y +CG +D+G K+F+ + E+ +++W ++I
Sbjct: 145 AAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLI 204

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GYA+       + L+ EM   G+ P +VT V V+S+CA L    +G  V   I   G  
Sbjct: 205 CGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLK 264

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            N  + NAL++MY +CG +  A+ +FD    + +V +  I+  Y   G    A+ + DEM
Sbjct: 265 LNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEM 324

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYG-MKNKYGLQPGPEHY----TCMVDLL 295
           L+ G RPD    +S +SA +        ++ FYG + + Y ++ G E +      ++D+ 
Sbjct: 325 LQQGPRPDRVTMLSAISASAQL------VDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMY 378

Query: 296 GRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
            + G+   A  + + ++       W +L      + +VE A   F ++
Sbjct: 379 MKCGKPEMACRVFD-LMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQI 425


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/543 (39%), Positives = 318/543 (58%), Gaps = 47/543 (8%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           Y+ALI  Y  N     ++ L+  M    V   S T   L  +  +P    LG   H    
Sbjct: 80  YSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSLLKNPS---LGSQLHLHAF 136

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWN----------------- 117
            FG   D  VGN ++ MYVK G +D  RK+FD++P + ++TW                  
Sbjct: 137 LFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACE 196

Query: 118 --------------AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163
                         +M++GY+QN +    L+ +R+M+  GV  D +T VG +S+CA LG 
Sbjct: 197 LFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGV 256

Query: 164 HSVGLEVEQQIQANGFGS--NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
                 + +  +++ FGS  N F+ +ALI+MY++CGN+++A  +F GM    V S++++I
Sbjct: 257 SGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMI 316

Query: 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281
            G+ +HG    A++LF EML++GI+P+   FV + +ACSHAG+ ++G + F  MK  YG+
Sbjct: 317 VGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYGV 376

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG 341
            P  +HY CM DLLGRAG L +AL+L+++M +EP+G VWGALLGA  IH N ++AE+A  
Sbjct: 377 SPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVAEIASR 436

Query: 342 KVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELK-GRVHLF 400
            + +LEP N G Y+LLS  Y+ A   D + RVR +MRE++L+K+PG S+VE K G +H F
Sbjct: 437 SLFELEPDNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCSWVEAKNGIIHEF 496

Query: 401 MVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTE-------VHSEKLA 453
             GD  H +  EI + LD   +L+Q    T    + NS  +  D E        HSEKLA
Sbjct: 497 FAGDVKHPEINEIKKALD---DLLQRLKCTGYQPKLNSVPYDIDDEGKRCLLVSHSEKLA 553

Query: 454 IAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCK 513
           +A+G+++T  G+ I +MKNLRIC DCH+ +   SK+  R+ IVRD  RFHHF +G CSC 
Sbjct: 554 LAYGLLSTDAGSTIKIMKNLRICEDCHIVMCGASKLTGRKIIVRDNMRFHHFLNGACSCN 613

Query: 514 DYW 516
           ++W
Sbjct: 614 NFW 616



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 125/233 (53%), Gaps = 20/233 (8%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD---PGYL-WLGMC 68
           V + ++++GY  N++  +A+  F KMRE GV  + +T++  +  C      GY  W+   
Sbjct: 207 VAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGVSGYADWIREI 266

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
                 +FG   +  VG+ L+ MY KCG+V+    +F  + E  + ++++MI G+A +G 
Sbjct: 267 AE--SSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVGFAVHGR 324

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG-----FGSNP 183
           A   ++L+ EM   G+ P+ VTFVG+ ++C+H G       VEQ  Q  G     +G +P
Sbjct: 325 ARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGM------VEQGQQLFGAMKECYGVSP 378

Query: 184 FLNN--ALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVA 233
             ++   + ++  R G+L+KA  +   MP +     W A++G   IHG+ +VA
Sbjct: 379 TADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVA 431



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 88/177 (49%), Gaps = 7/177 (3%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           Y   LF QV       ++A+I  YA+NG   H + LY  M +  V P + TF  + S   
Sbjct: 64  YPHLLFSQVHSPNPFLYSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSL-- 121

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
            L   S+G ++       GF ++ ++ N +I+MY + G L  AR +FD MP + VV+WT 
Sbjct: 122 -LKNPSLGSQLHLHAFLFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTE 180

Query: 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
           +I  Y   G  + A +LF  +       D  A+ S+++  S   +  K L++F  M+
Sbjct: 181 LIVAYARSGDMDSACELFVGLPVK----DMVAWTSMVTGYSQNAMPKKALQFFRKMR 233


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/543 (39%), Positives = 320/543 (58%), Gaps = 43/543 (7%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           + A+I GY L  L+SE+ + + +MR  GV   S T   L   C     + LG   H   +
Sbjct: 110 WTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTI 169

Query: 75  KFG-LDLDFSVGNCLMTMYVKCGSVDYGRK------------------------------ 103
             G    D  VGN ++ +YVKCG +   RK                              
Sbjct: 170 LIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESAS 229

Query: 104 -LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162
            LFD +P K ++ W AM++GYAQNG     LE +++M+ +G+  D VT  GV+S+CA LG
Sbjct: 230 GLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLG 289

Query: 163 AHSVGLEVEQQIQANGFGS--NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           A      +    + +GFG   N  + +ALI+MY++CG+  +A  +F+ M  + V S++++
Sbjct: 290 AVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSM 349

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           I GY +HG    A+QLF +MLK+ IRP+   F+ +LSACSHAGL ++G + F  M+  +G
Sbjct: 350 ILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFG 409

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           + P P+HY CMVDLLGRAG L EAL+L+++M +EP+G VWGALLGAC+IH N ++A++A 
Sbjct: 410 VAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAA 469

Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELK-GRVHL 399
            ++ KLEP   G Y+LLSNIY+ A   + + ++R ++RE+  KK+PG S+ E K G +H 
Sbjct: 470 NELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHD 529

Query: 400 FMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTE------VHSEKLA 453
           F  GD  H ++ EI + L +L   ++ H    + +  ++   L D E       HSEKLA
Sbjct: 530 FFAGDTTHPRSSEIRQALKQLIERLRSHG--YKPNLGSAPYDLTDDEKERILMSHSEKLA 587

Query: 454 IAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCK 513
           +A+G++ T  G  I +MKN+RIC DCH  +   S+I  R+ IVRD  RFHHF +G CSC 
Sbjct: 588 LAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCG 647

Query: 514 DYW 516
           ++W
Sbjct: 648 NFW 650



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 135/254 (53%), Gaps = 16/254 (6%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+++GY  N    EA+  F KM++ G+E + VT+  ++  C       LG   H  
Sbjct: 241 VAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQ-----LGAVKHAN 295

Query: 73  CVK-------FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
            ++       FG   +  VG+ L+ MY KCGS D   K+F+ + E+ + ++++MI GYA 
Sbjct: 296 WIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAM 355

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA-NGFGSNPF 184
           +G A   L+L+ +M    + P+ VTF+G+LS+C+H G    G ++  +++   G   +P 
Sbjct: 356 HGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPD 415

Query: 185 LNNALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFDEMLKS 243
               ++++  R G L++A  +   MP +     W A++G   IHG+ ++A    +E+ K 
Sbjct: 416 HYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFK- 474

Query: 244 GIRPDGTAFVSVLS 257
            + P+G     +LS
Sbjct: 475 -LEPNGIGNYILLS 487



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 93/180 (51%), Gaps = 7/180 (3%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           Y   +F QV       W AMI GYA  GL +     Y  M+  GV P + TF  +  +C 
Sbjct: 94  YPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACG 153

Query: 160 HLGAHSVGLEVE-QQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWT 218
                 +G +V  Q I   GF S+ ++ N++I++Y +CG L  AR +FD M  + VVSWT
Sbjct: 154 AALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWT 213

Query: 219 AIIGGYGIHGHGEVAVQLFDEM-LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
            +I  Y  +G  E A  LFD++ LK     D  A+ ++++  +  G   + LEYF  M++
Sbjct: 214 ELIVAYAKYGDMESASGLFDDLPLK-----DMVAWTAMVTGYAQNGRPKEALEYFQKMQD 268


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/551 (38%), Positives = 323/551 (58%), Gaps = 37/551 (6%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE        V YN ++S YV +   S+ + +  +M ++G   + VTML  +  C   
Sbjct: 288 IFDECANKN--LVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQL 345

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L +G   H   ++ GL+   ++ N ++ MY+KCG  +   K+F+ +P K ++TWN++I
Sbjct: 346 GDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLI 405

Query: 121 SGYAQNG-------------------------------LATHVLELYREMKSLGVCPDAV 149
           +G  ++G                               +    +EL+REM++ G+  D V
Sbjct: 406 AGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRV 465

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
           T VG+ S+C +LGA  +   V   I+ N    +  L  AL++M++RCG+   A  +F  M
Sbjct: 466 TMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRM 525

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
            ++ V +WTA IG   + G+ E A++LF+EML+  ++PD   FV++L+ACSH G  D+G 
Sbjct: 526 EKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGR 585

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
           + F+ M+  +G++P   HY CMVDLLGRAG L EA++LI+SM +EP+  VWG+LL AC+ 
Sbjct: 586 QLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRK 645

Query: 330 HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYS 389
           HKNVELA  A  K+ +L P   G +VLLSNIY+ A     + RVR+ M+E+ ++K PG S
Sbjct: 646 HKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSS 705

Query: 390 YVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH----DGTKRSDQKNSEEHLNDT 445
            +E++G +H F  GD +H +   I  ML+++   + E     D T      + +E  +  
Sbjct: 706 SIEVQGLIHEFTSGDESHAENTHIGLMLEEINCRLSEAGYVPDTTNVLLDVDEQEKEHLL 765

Query: 446 EVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHF 505
             HSEKLA+A+G+I T  G  I V+KNLR+C DCH F KLVSK+ +R+  VRD  R+H F
Sbjct: 766 SRHSEKLAMAYGLITTGQGIPIRVVKNLRMCSDCHSFAKLVSKLYNREITVRDNNRYHFF 825

Query: 506 KSGFCSCKDYW 516
           K GFCSC+DYW
Sbjct: 826 KEGFCSCRDYW 836



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/379 (30%), Positives = 185/379 (48%), Gaps = 35/379 (9%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + +LI+GY    L  EAVSLF +M E GVE N VTM+C++  C     L LG      
Sbjct: 197 VSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSY 256

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             + G++L   + N L+ MY+KCG +   R++FD+   K L+ +N ++S Y  +  A+ V
Sbjct: 257 ISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDV 316

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L +  EM   G  PD VT +  +++CA LG  SVG      +  NG      ++NA+I+M
Sbjct: 317 LVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDM 376

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK---------- 242
           Y +CG  + A  +F+ MP KTVV+W ++I G    G  E+A ++FDEML+          
Sbjct: 377 YMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMI 436

Query: 243 ---------------------SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281
                                 GI  D    V + SAC + G  D   ++      K  +
Sbjct: 437 GALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLA-KWVCTYIEKNDI 495

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG 341
               +  T +VD+  R G  + A+ + + M  + D + W A +G   +  N E A   F 
Sbjct: 496 HVDLQLGTALVDMFSRCGDPSSAMHVFKRM-EKRDVSAWTAAIGVMAMEGNTEGAIELFN 554

Query: 342 KVI--KLEPMNTGYYVLLS 358
           +++  K++P +  +  LL+
Sbjct: 555 EMLEQKVKPDDVVFVALLT 573



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/334 (31%), Positives = 173/334 (51%), Gaps = 8/334 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           YN LI GY    L  +A+ L+ +M   G+  +  T   LL  C     L  G+  H   +
Sbjct: 98  YNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVL 157

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K GL+ D  V N L+  Y +CG VD GRKLFD + E+ +++W ++I+GY+   L+   + 
Sbjct: 158 KMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVS 217

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+ +M   GV P+ VT V V+S+CA L    +G +V   I   G   +  + NAL++MY 
Sbjct: 218 LFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYM 277

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG++  AR IFD    K +V +  I+  Y  H      + + DEML+ G RPD    +S
Sbjct: 278 KCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLS 337

Query: 255 VLSACSHAG-LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
            ++AC+  G L+     + Y ++N  GL+        ++D+  + G+   A ++ E M  
Sbjct: 338 TIAACAQLGDLSVGKSSHAYVLRN--GLEGWDNISNAIIDMYMKCGKREAACKVFEHM-- 393

Query: 314 EPDGAV--WGALLGACKIHKNVELAELAFGKVIK 345
            P+  V  W +L+       ++ELA   F ++++
Sbjct: 394 -PNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLE 426



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 72/198 (36%), Positives = 107/198 (54%), Gaps = 7/198 (3%)

Query: 70  HCICVKFGLDLDFSVGNC--LMTMYVKCG---SVDYGRKLF--DQVPEKGLITWNAMISG 122
           HC  +K GL       N   L+   V+ G   S+DY R  F  D      L  +N +I G
Sbjct: 45  HCDMMKKGLLCHKPASNLNKLIASSVQIGTLESLDYARNAFGDDDGNMASLFMYNCLIRG 104

Query: 123 YAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN 182
           YA  GL    + LY +M  +G+ PD  TF  +LS+C+ + A S G++V   +   G   +
Sbjct: 105 YASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGD 164

Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
            F++N+LI+ YA CG +   R +FDGM  + VVSWT++I GY      + AV LF +M +
Sbjct: 165 IFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGE 224

Query: 243 SGIRPDGTAFVSVLSACS 260
           +G+ P+    V V+SAC+
Sbjct: 225 AGVEPNPVTMVCVISACA 242


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/523 (39%), Positives = 319/523 (60%), Gaps = 10/523 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICVD 59
           VFDES  +    V +N +I+ ++   L  +A  L  +M +   +  + VTM+ L+P C  
Sbjct: 168 VFDES--TVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQ 225

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
            G L  G   H    + GLD +  V N ++ MY KC  ++  +++F+++ EK +++W +M
Sbjct: 226 LGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSM 285

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           +SG A++G     L L+++M+   +  D +T VGVLS+CA  GA   G  +   I     
Sbjct: 286 LSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEI 345

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             +  L  AL++MYA+CG++  A  +F  M  + V +W A+IGG  +HGHGE A+ LFD+
Sbjct: 346 NCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQ 405

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M    + PD   F+++L ACSHAGL D+GL  F  MKNK+ ++P  EHY C+VDLL RA 
Sbjct: 406 MEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRAR 465

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
           ++++AL  IE+M ++ +  +W  LLGAC+   + +LAE    +VI+LEP + G YV+LSN
Sbjct: 466 KVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSN 525

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
           +Y+     D  +++R  M+ + ++K PG S++EL G +H F+ GDR+H QT +IY M+++
Sbjct: 526 LYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEE 585

Query: 420 LENLVQEHDGTKRSDQKN------SEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
           +   V   DG       N       EE  +   +HSEKLAIA G+I+T  G+ I ++KNL
Sbjct: 586 MTRRVNL-DGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNL 644

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           R+C DCH F+K+ SK+ +R+ + RD +RFHHFK G CSC D+W
Sbjct: 645 RVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 687



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 109/345 (31%), Positives = 179/345 (51%), Gaps = 5/345 (1%)

Query: 16  NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVK 75
           N +I GY  +    EAVSL+  M E+GV +++ T   +L  C   G + LG   HC  +K
Sbjct: 80  NTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLK 139

Query: 76  FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLEL 135
            G   D  V N L+  Y  CGS      +FD+   + ++TWN MI+ +   GL+    +L
Sbjct: 140 NGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDL 199

Query: 136 YREMKSL-GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
             EM  L  + PD VT V ++ +CA LG    G  +    +  G   N  +NNA+++MY 
Sbjct: 200 LDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYC 259

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +C +++ A+ +F+ +  K V+SWT+++ G    G+ + A+ LF +M  + I  D    V 
Sbjct: 260 KCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVG 319

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VLSAC+  G  D+G +Y + + +K+ +       T +VD+  + G ++ AL++   M V 
Sbjct: 320 VLSACAQTGALDQG-KYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR 378

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKV--IKLEPMNTGYYVLL 357
            +   W AL+G   +H + E A   F ++   KL P +  +  LL
Sbjct: 379 -NVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALL 422



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 114/231 (49%), Gaps = 3/231 (1%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
           G ++Y RKLF Q+        N MI GYA++      + LY  M   GV  D  T+  VL
Sbjct: 59  GDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVL 118

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
           ++CA LGA  +G     ++  NGFGS+ F+ NALI  Y  CG+   A  +FD    + VV
Sbjct: 119 AACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVV 178

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLK-SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYG 274
           +W  +I  +   G  E A  L DEM K   +RPD    VS++ AC+  G  ++G ++ + 
Sbjct: 179 TWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERG-KFLHS 237

Query: 275 MKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
              + GL         ++D+  +   +  A E+  + + E D   W ++L 
Sbjct: 238 YSKELGLDENLRVNNAILDMYCKCDDIESAQEVF-NRIREKDVLSWTSMLS 287


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/510 (40%), Positives = 304/510 (59%), Gaps = 6/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+ISGYV      EA+ LF +M +  V  +  TM+ ++      G + LG   H  
Sbjct: 161 VSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSW 220

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               G   +  + N L+  Y KCG ++    LF  +  K +I+WN +I GY    L    
Sbjct: 221 IADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEA 280

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI--QANGFGSNPFLNNALI 190
           L L++EM   G  P+ VT + +L +CAHLGA  +G  +   I  +  G  +   L  +LI
Sbjct: 281 LLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLI 340

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MY++CG+++ A  +F+ M  K++ +W A+I G+ +HG    A  +F  M K+ I+PD  
Sbjct: 341 DMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDI 400

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            FV +LSACSHAG+ D G   F  M + Y + P  EHY CM+DLLG +G   EA E+I +
Sbjct: 401 TFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMIST 460

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M +EPDG +W +LL ACK+H NVEL E     + K+EP N G YVLLSNIY+ A   + +
Sbjct: 461 MTMEPDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEV 520

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
            R+R ++ ++ +KK PG S +E+   VH F++GD+ H +  EIY ML+++E L+QE    
Sbjct: 521 ARIRGLLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFV 580

Query: 431 KRSDQ--KNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
             + +  +  EE   +  +  HSEKLAIAFG+I+T P T++ ++KNLR+C +CH   KL+
Sbjct: 581 PDTSEVLQEMEEEFKEGALRHHSEKLAIAFGLISTKPETKLTIVKNLRVCRNCHEATKLI 640

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SKI  R+ I RD TRFHHF+ G CSC DYW
Sbjct: 641 SKIYKREIIARDRTRFHHFRDGVCSCNDYW 670



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/389 (30%), Positives = 190/389 (48%), Gaps = 36/389 (9%)

Query: 4   ESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL 63
           E+I+  +L + +N +  G+ L+     A+ L+  M   G+  NS T   LL  C      
Sbjct: 21  ETIQEPNLLI-WNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKLKAS 79

Query: 64  WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKC---------------------------- 95
             G+  H   +K G +LD  V   L++MYV+                             
Sbjct: 80  KEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTGY 139

Query: 96  ---GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFV 152
              G ++  R +FD++P K +++WNAMISGY + G     LEL++EM    V PD  T V
Sbjct: 140 ASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMV 199

Query: 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK 212
            V+S+ A  G+  +G +V   I  +GFGSN  + NALI+ Y++CG ++ A  +F G+  K
Sbjct: 200 TVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYK 259

Query: 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG-LEY 271
            V+SW  +IGGY      + A+ LF EML+SG  P+    +S+L AC+H G  D G   +
Sbjct: 260 DVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIH 319

Query: 272 FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHK 331
            Y  K   G+       T ++D+  + G +  A ++  SML +   A W A++    +H 
Sbjct: 320 VYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPA-WNAMIFGFAMHG 378

Query: 332 NVELAELAFGKVIK--LEPMNTGYYVLLS 358
               A   F ++ K  ++P +  +  LLS
Sbjct: 379 RANAAFDIFSRMRKNEIKPDDITFVGLLS 407



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 122/259 (47%), Gaps = 33/259 (12%)

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
           + Y   +F+ + E  L+ WN M  G+A +      L+LY  M SLG+ P++ TF  +L S
Sbjct: 13  LPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKS 72

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
           CA L A   GL++   +   G+  + +++ +LI+MY +   L+ A  +FD    + VVS+
Sbjct: 73  CAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSY 132

Query: 218 TAIIGGYGIHGHGEV-------------------------------AVQLFDEMLKSGIR 246
           TA++ GY   G+ E                                A++LF EM+K+ +R
Sbjct: 133 TALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVR 192

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           PD +  V+V+SA + +G  + G +    + + +G     +    ++D   + G++  A  
Sbjct: 193 PDESTMVTVISASARSGSIELGRQVHSWIAD-HGFGSNLKIVNALIDFYSKCGEMETACG 251

Query: 307 LIESMLVEPDGAVWGALLG 325
           L    L   D   W  L+G
Sbjct: 252 LFLG-LSYKDVISWNILIG 269


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/530 (41%), Positives = 310/530 (58%), Gaps = 28/530 (5%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +NA+ISGY  N L  +A+ LF +M +  G+  N+ TM  ++P CV           H   
Sbjct: 367 WNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYA 426

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           VK G   D  V N LM MY + G +D    +FD +  +  ++WN MI+GY  +G  ++ L
Sbjct: 427 VKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNAL 486

Query: 134 ELYREMKSLGVC-----------------PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
            L  EM+ +                    P+A+T + VL  CA L A + G E+      
Sbjct: 487 VLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIR 546

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
           N   S+  + +AL++MYA+CG L  +R +F+ MP K V++W  +I   G+HG GE A++L
Sbjct: 547 NMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALEL 606

Query: 237 FDEMLKSGIR-----PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCM 291
           F  M+    R     P+   F++V +ACSH+GL  +GL  FY MK+ +G++P  +HY C+
Sbjct: 607 FKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACV 666

Query: 292 VDLLGRAGQLNEALELIESMLVEPDG-AVWGALLGACKIHKNVELAELAFGKVIKLEPMN 350
           VDLLGRAGQL EA EL+ +M  E D    W +LLGAC+IH+NVEL E+A   ++ LEP  
Sbjct: 667 VDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNV 726

Query: 351 TGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQT 410
             +YVLLSNIYS A   +  M VR  MR+  +KK+PG S++E +  VH FM GD +H Q+
Sbjct: 727 ASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQS 786

Query: 411 VEIYRMLDKLENLVQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTE 466
            +++  L+ L   +++     D +      + +E  N    HSEKLAIAFGI+NT PGT 
Sbjct: 787 EQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILNTPPGTT 846

Query: 467 IVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           I V KNLR+C DCH   K +SKI++R+ IVRD  RFHHFK G CSC DYW
Sbjct: 847 IRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 896



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 162/318 (50%), Gaps = 10/318 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGY---LWLGMCC 69
           V +N+ I+         +A+  F  M+ + +E++S T++ +   C + G    L LG   
Sbjct: 160 VSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQL 219

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   ++ G    F+  N LM MY K G VD  + LF+   ++ +++WN MIS ++Q+   
Sbjct: 220 HGYSLRVGDQKTFT-NNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRF 278

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI-QANGFGSNPFLNNA 188
           +  L  +R M   GV  D VT   VL +C+HL    VG E+   + + N    N F+ +A
Sbjct: 279 SEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSA 338

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK-SGIRP 247
           L++MY  C  ++  R +FD +  + +  W A+I GY  +G  E A+ LF EM+K +G+ P
Sbjct: 339 LVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLP 398

Query: 248 DGTAFVSVLSACSH-AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           + T   SV+ AC H    ++K  E  +G   K G +        ++D+  R G+++ +  
Sbjct: 399 NTTTMASVMPACVHCEAFSNK--ESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISET 456

Query: 307 LIESMLVEPDGAVWGALL 324
           + +SM V  D   W  ++
Sbjct: 457 IFDSMEVR-DRVSWNTMI 473



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 151/300 (50%), Gaps = 31/300 (10%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQ-----------------GVEINSVTMLCLLP 55
           V +N +I+GYVL+   S A+ L  +M+                     + N++T++ +LP
Sbjct: 467 VSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLP 526

Query: 56  ICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT 115
            C     +  G   H   ++  L  D +VG+ L+ MY KCG ++  R++F+++P K +IT
Sbjct: 527 GCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVIT 586

Query: 116 WNAMISGYAQNGLATHVLELYREMKSLG-----VCPDAVTFVGVLSSCAHLGAHSVGLEV 170
           WN +I     +G     LEL++ M +         P+ VTF+ V ++C+H G  S GL +
Sbjct: 587 WNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNL 646

Query: 171 EQQIQANGFGSNPFLNN--ALINMYARCGNLKKARAIFDGMPRK--TVVSWTAIIGGYGI 226
             +++ +  G  P  ++   ++++  R G L++A  + + MP +   V +W++++G   I
Sbjct: 647 FYRMK-HDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRI 705

Query: 227 HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC-SHAGLTDKGLEYFYGMKNKYGLQPGP 285
           H + E+       +L   + P+  +   +LS   S AGL +K +E    M+ + G++  P
Sbjct: 706 HQNVELGEVAAKNLLH--LEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMR-QMGVKKEP 762



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 119/253 (47%), Gaps = 6/253 (2%)

Query: 30  EAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGL-DLDFSVGNCL 88
           EA+S + +M   G   ++     +L        L  G   H   VKFG      +V N L
Sbjct: 75  EAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTL 134

Query: 89  MTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDA 148
           + MY KCG +    K+FD++ ++  ++WN+ I+   +       LE +R M+   +   +
Sbjct: 135 VNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSS 194

Query: 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQANGF---GSNPFLNNALINMYARCGNLKKARAI 205
            T V V  +C++LG    GL + +Q+            F NNAL+ MYA+ G +  ++A+
Sbjct: 195 FTLVSVALACSNLGVMH-GLRLGKQLHGYSLRVGDQKTFTNNALMAMYAKLGRVDDSKAL 253

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           F+    + +VSW  +I  +        A+  F  M+  G+  DG    SVL ACSH    
Sbjct: 254 FESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERL 313

Query: 266 DKGLE-YFYGMKN 277
           D G E + Y ++N
Sbjct: 314 DVGKEIHAYVLRN 326



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 102/243 (41%), Gaps = 8/243 (3%)

Query: 109 PEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGL 168
           P +   +W   +    ++      +  Y EM   G  PD   F  VL + + L     G 
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 169 EVEQQIQANGFGSNPF-LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH 227
           ++       G+GS+   + N L+NMY +CG +     +FD +  +  VSW + I      
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRF 172

Query: 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL---EYFYGMKNKYGLQPG 284
              E A++ F  M    +       VSV  ACS+ G+   GL   +  +G   + G Q  
Sbjct: 173 EKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVM-HGLRLGKQLHGYSLRVGDQKT 231

Query: 285 PEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI 344
             +   M  +  + G+++++  L ES  V+ D   W  ++ +         A LAF +++
Sbjct: 232 FTNNALMA-MYAKLGRVDDSKALFES-FVDRDMVSWNTMISSFSQSDRFSEA-LAFFRLM 288

Query: 345 KLE 347
            LE
Sbjct: 289 VLE 291


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/510 (40%), Positives = 310/510 (60%), Gaps = 20/510 (3%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGY-LWLGMCCHCI 72
           + A++SGY  N ++ EA  +F  M E+  V  N++    +    +D    L+  M C  +
Sbjct: 258 WTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNV 317

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
                     +  N ++T Y + G ++  + +FD +P+K  ++W AM++ Y+Q G +   
Sbjct: 318 ----------ASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEET 367

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+L+ EM   G   +   F  VLS+CA + A   G+++  ++   G+G   F+ NAL+ M
Sbjct: 368 LQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAM 427

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CGN++ AR  F+ M  + VVSW  +I GY  HG G+ A+++FD M  +  +PD    
Sbjct: 428 YFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITL 487

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           V VL+ACSH+GL +KG+ YFY M + +G+   PEHYTCM+DLLGRAG+L EA +L++ M 
Sbjct: 488 VGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMP 547

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            EPD  +WGALLGA +IH+N EL   A  K+ +LEP N G YVLLSNIY+ +       +
Sbjct: 548 FEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARK 607

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           +R+MM ER +KK PG+S++E++ +VH F  GD  H +  +IY  L+ L+  +++      
Sbjct: 608 MRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSA 667

Query: 433 SD------QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
           +D      ++  +EH+   + HSEKLA+A+GI+N  PG  I V+KNLR+CGDCH   K +
Sbjct: 668 TDMVLHDVEEEEKEHM--LKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYI 725

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           S I  R  ++RD+ RFHHF+ G CSC DYW
Sbjct: 726 SAIEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 123/248 (49%), Gaps = 4/248 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V + A+++ Y       E + LF +M   G  +N     C+L  C D   L  GM  H 
Sbjct: 348 AVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHG 407

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             ++ G  +   VGN L+ MY KCG+++  R  F+++ E+ +++WN MI+GYA++G    
Sbjct: 408 RLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKE 467

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN-GFGSNPFLNNALI 190
            LE++  M++    PD +T VGVL++C+H G    G+     +  + G  + P     +I
Sbjct: 468 ALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMI 527

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++  R G L +A  +   MP       W A++G   IH + E+     +++ +  + P+ 
Sbjct: 528 DLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFE--LEPEN 585

Query: 250 TAFVSVLS 257
                +LS
Sbjct: 586 AGMYVLLS 593



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 140/317 (44%), Gaps = 30/317 (9%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVT-MLCLLPICVDPGYLWLGMCC 69
           T  YNA+++GY  N  +  A SLF  + R      N++   L +     D   L+  M  
Sbjct: 69  TSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPV 128

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
                      D    N +++ +   G V   R  FD  PEK  ++WN M++ Y +NG  
Sbjct: 129 R----------DSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRV 178

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
                L+          D +++  ++S     G  S   E+  ++     G +    N +
Sbjct: 179 EEARGLFNSRTEW----DVISWNALMSGYVQWGKMSEARELFDRMP----GRDVVSWNIM 230

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++ YAR G++ +AR +FD  P + V +WTA++ GY  +G  E A ++FD M +     + 
Sbjct: 231 VSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NA 286

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
            ++ ++++A     + D+  E F  M  +         +  M+    +AG L EA  + +
Sbjct: 287 VSWNAMVAAYIQRRMMDEAKELFNMMPCR-----NVASWNTMLTGYAQAGMLEEAKAVFD 341

Query: 310 SMLVEPDGAVWGALLGA 326
           +M  + D   W A+L A
Sbjct: 342 TM-PQKDAVSWAAMLAA 357



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 17/187 (9%)

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
           +N  I  + R G +  A  +F  MPR++  ++ A++ GY  +G   +A  LF    ++  
Sbjct: 41  SNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLF----RAIP 96

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
           RPD  ++ ++L    HA      L    G+ ++  ++     Y  M+      G ++ A 
Sbjct: 97  RPDNYSYNTLL----HALAVSSSLADARGLFDEMPVRDSVT-YNVMISSHANHGLVSLAR 151

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGK-----VIKLEPMNTGYYVLLSNI 360
              + +  E D   W  +L A   +  VE A   F       VI    + +GY  +    
Sbjct: 152 HYFD-LAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGY--VQWGK 208

Query: 361 YSEARNL 367
            SEAR L
Sbjct: 209 MSEAREL 215


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/512 (39%), Positives = 305/512 (59%), Gaps = 12/512 (2%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
              +NA++ GY+++    +A+ L+  M+E G   N +T+            L  G     +
Sbjct: 1075 ASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAV 1134

Query: 73   CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             VK G +LD  V + ++ MY+KCG ++  R++F+++P    + W  MISG  +NG   H 
Sbjct: 1135 VVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHA 1194

Query: 133  LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN----PFLNNA 188
            L  Y  M+   V PD  TF  ++ +C+ L A    LE  +QI AN    N    PF+  +
Sbjct: 1195 LFTYHHMRLSKVQPDEYTFATLVKACSLLTA----LEQGRQIHANTVKLNCAFDPFVMTS 1250

Query: 189  LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
            L++MYA+CGN++ AR +F       + SW A+I G   HG+ E A+Q F+EM   G+ PD
Sbjct: 1251 LVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPD 1310

Query: 249  GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
               F+ VLSACSH+GL  +  E FY M+  YG++P  EHY+C+VD L RAG++ EA ++I
Sbjct: 1311 RVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKVI 1370

Query: 309  ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
             SM  E   +++  LL AC++  + E  +    K++ LEP ++  YVLLSN+Y+ A   +
Sbjct: 1371 SSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWE 1430

Query: 369  GIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHD 428
             +   R MMR+  +KKDPG+S+V+LK +VHLF+ GDR+H +T  IY  ++ +   ++E  
Sbjct: 1431 NVASARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEG 1490

Query: 429  GTKRSDQKNSEEHLNDTE----VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
                +D    +    D E     HSEKLAIA+G++ T P T + V+KNLR+CGDCH  IK
Sbjct: 1491 YLPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIK 1550

Query: 485  LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
             +SK+ +R+ ++RDA RFHHF+SG CSC DYW
Sbjct: 1551 YISKVFEREVVLRDANRFHHFRSGVCSCGDYW 1582



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 170/359 (47%), Gaps = 27/359 (7%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
            + +N  +S ++      EAV  F  M    V  + +T + +L +      L LG   H I
Sbjct: 872  IAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGI 931

Query: 73   CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             V+ GLD   SVGNCL+ MYVK GSV   R +F Q+ E  L++WN MISG A +GL    
Sbjct: 932  VVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECS 991

Query: 133  LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA----NGFGSNPFLNNA 188
            + ++ ++   G+ PD  T   VL +C+ LG    G  +  QI A     G   + F++  
Sbjct: 992  VGMFVDLLRGGLLPDQFTVASVLRACSSLGG---GCHLATQIHACAMKAGVVLDSFVSTT 1048

Query: 189  LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
            LI++Y++ G +++A  +F       + SW A++ GY + G    A++L+  M +SG R +
Sbjct: 1049 LIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERAN 1108

Query: 249  GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN------ 302
                +++ +A   AG    GL    G+K    +Q         +DL   +G L+      
Sbjct: 1109 Q---ITLANAAKAAG----GL---VGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCG 1158

Query: 303  --EALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG--KVIKLEPMNTGYYVLL 357
              E+   I + +  PD   W  ++  C  +   E A   +   ++ K++P    +  L+
Sbjct: 1159 EMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLV 1217



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 153/329 (46%), Gaps = 11/329 (3%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD-PGYLWLGMCCHC 71
            V +N +ISG  L+ L   +V +F  +   G+  +  T+  +L  C    G   L    H 
Sbjct: 973  VSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHA 1032

Query: 72   ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              +K G+ LD  V   L+ +Y K G ++    LF       L +WNAM+ GY  +G    
Sbjct: 1033 CAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPK 1092

Query: 132  VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA----NGFGSNPFLNN 187
             L LY  M+  G   + +T    L++ A      VGL+  +QIQA     GF  + F+ +
Sbjct: 1093 ALRLYILMQESGERANQIT----LANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVIS 1148

Query: 188  ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
             +++MY +CG ++ AR IF+ +P    V+WT +I G   +G  E A+  +  M  S ++P
Sbjct: 1149 GVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQP 1208

Query: 248  DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
            D   F +++ ACS     ++G +  +    K      P   T +VD+  + G + +A  L
Sbjct: 1209 DEYTFATLVKACSLLTALEQGRQ-IHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGL 1267

Query: 308  IESMLVEPDGAVWGALLGACKIHKNVELA 336
             +        A W A++     H N E A
Sbjct: 1268 FKRTNTS-RIASWNAMIVGLAQHGNAEEA 1295



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 94/188 (50%), Gaps = 4/188 (2%)

Query: 63  LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE--KGLITWNAMI 120
           L LG   H   +  G   D  + N L+TMY KCGS+   RKLFD  P+  + L+TWNA++
Sbjct: 642 LPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAIL 701

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           S +A    A     L+R ++   V     T   V   C    + S    +       G  
Sbjct: 702 SAHADK--ARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQ 759

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            + F+  AL+N+YA+ G +++AR +FDGM  + VV W  ++  Y   G    A+ LF E 
Sbjct: 760 WDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEF 819

Query: 241 LKSGIRPD 248
            ++G+RPD
Sbjct: 820 NRTGLRPD 827



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 139/318 (43%), Gaps = 36/318 (11%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
            V +N ++  YV   L  EA+ LF +    G+  + VT LC L   V              
Sbjct: 794  VLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVT-LCTLARVVK------------- 839

Query: 73   CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLF---DQVPEKGLITWNAMISGYAQNGLA 129
                      S  N L     +  +  YG KLF   D      +I WN  +S + Q G  
Sbjct: 840  ----------SKQNVLEWQLKQLKA--YGTKLFMYDDDDDGSDVIAWNKTLSWFLQRGET 887

Query: 130  THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
               ++ + +M +  V  D +TFV +LS  A L    +G ++   +  +G      + N L
Sbjct: 888  WEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCL 947

Query: 190  INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
            INMY + G++ +AR +F  M    +VSW  +I G  + G  E +V +F ++L+ G+ PD 
Sbjct: 948  INMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQ 1007

Query: 250  TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
                SVL ACS  G         +    K G+       T ++D+  ++G++ EA    E
Sbjct: 1008 FTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEA----E 1063

Query: 310  SMLVEPDG---AVWGALL 324
             + V  DG   A W A++
Sbjct: 1064 FLFVNQDGFDLASWNAMM 1081



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 129/329 (39%), Gaps = 27/329 (8%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD +  ++   V +NA++S +       +   LF  +R   V     T+  +  +C+  
Sbjct: 683 LFDTTPDTSRDLVTWNAILSAHA--DKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLS 740

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
                    H   VK GL  D  V   L+ +Y K G +   R LFD +  + ++ WN M+
Sbjct: 741 ASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMM 800

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
             Y   GL    L L+ E    G+ PD VT    L + A +      +   Q  Q   +G
Sbjct: 801 KAYVDTGLEYEALLLFSEFNRTGLRPDDVT----LCTLARVVKSKQNVLEWQLKQLKAYG 856

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           +  F       MY                    V++W   +  +   G    AV  F +M
Sbjct: 857 TKLF-------MYDDD------------DDGSDVIAWNKTLSWFLQRGETWEAVDCFVDM 897

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           + S +  DG  FV +LS  +     + G +  +G+  + GL        C++++  + G 
Sbjct: 898 INSRVACDGLTFVVMLSVVAGLNCLELGKQ-IHGIVVRSGLDQVVSVGNCLINMYVKTGS 956

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKI 329
           ++ A  +   M  E D   W  ++  C +
Sbjct: 957 VSRARTVFWQM-NEVDLVSWNTMISGCAL 984


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/508 (40%), Positives = 311/508 (61%), Gaps = 4/508 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N L++G+        A+  F +M   G++ N+ T+   L  C     L LG   H  
Sbjct: 465 ITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGY 524

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++  ++L   VG+ L++MY  C S++    +F ++  + ++ WN++IS  AQ+G + + 
Sbjct: 525 VLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNA 584

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+L REM    V  + VT V  L +C+ L A   G E+ Q I   G  +  F+ N+LI+M
Sbjct: 585 LDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDM 644

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y RCG+++K+R IFD MP++ +VSW  +I  YG+HG G  AV LF +    G++P+   F
Sbjct: 645 YGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITF 704

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            ++LSACSH+GL ++G +YF  MK +Y + P  E Y CMVDLL RAGQ NE LE IE M 
Sbjct: 705 TNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMP 764

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            EP+ AVWG+LLGAC+IH N +LAE A   + +LEP ++G YVL++NIYS A   +   +
Sbjct: 765 FEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAK 824

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           +R +M+ER + K PG S++E+K ++H F+VGD +H    +I   ++ L   ++E      
Sbjct: 825 IRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPD 884

Query: 433 SDQKNSEEHLNDTEV----HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
           ++    +   ++ E     HSEK+A+AFG+I+T+ GT + ++KNLR+CGDCH   K +SK
Sbjct: 885 TNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISK 944

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +  R  I+RD  RFHHF  G CSC DYW
Sbjct: 945 VEKRDIIMRDNYRFHHFVDGVCSCGDYW 972



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 160/354 (45%), Gaps = 38/354 (10%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + ALI+G   N    EA+S+F KM  +GV+ NS+T+   +  C +   L  G   H  
Sbjct: 328 VSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGY 387

Query: 73  CVKFG-LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           C+K   LD D  VGN L+  Y KC SV+  R+ F  + +  L++WNAM++GYA  G    
Sbjct: 388 CIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEE 447

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF------- 184
            +EL  EMK  G+ PD +T+ G+++     G     LE  Q++ + G   N         
Sbjct: 448 AIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALA 507

Query: 185 ----------------------------LNNALINMYARCGNLKKARAIFDGMPRKTVVS 216
                                       + +ALI+MY+ C +L+ A ++F  +  + VV 
Sbjct: 508 ACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVV 567

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
           W +II      G    A+ L  EM  S +  +    VS L ACS      +G E  +   
Sbjct: 568 WNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKE-IHQFI 626

Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
            + GL         ++D+ GR G + ++  + + ++ + D   W  ++    +H
Sbjct: 627 IRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFD-LMPQRDLVSWNVMISVYGMH 679



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 160/325 (49%), Gaps = 5/325 (1%)

Query: 63  LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISG 122
           L LG   H   V  G+D+   +G+ L+ +Y + G V+  R++FD++ E+ + +W A++  
Sbjct: 105 LRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEM 164

Query: 123 YAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN 182
           Y   G     ++L+  M + GV PD   F  V  +C+ L  + VG +V   + + GF  N
Sbjct: 165 YCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGN 224

Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
             +  ++++M+ +CG +  AR  F+ +  K V  W  ++ GY   G  + A++   +M  
Sbjct: 225 SCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKL 284

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
           SG++PD   + +++S  + +G  ++  +YF  M      +P    +T ++    + G   
Sbjct: 285 SGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDF 344

Query: 303 EALELIESMLVE---PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV--LL 357
           EAL +   M++E   P+     + + AC     +       G  IK+E +++   V   L
Sbjct: 345 EALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSL 404

Query: 358 SNIYSEARNLDGIMRVRMMMRERRL 382
            + Y++ R+++   R   M+++  L
Sbjct: 405 VDYYAKCRSVEVARRKFGMIKQTDL 429



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 120/229 (52%), Gaps = 4/229 (1%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           ST   V +N++IS    +     A+ L  +M    VE+N+VTM+  LP C     L  G 
Sbjct: 561 STRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGK 620

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
             H   ++ GLD    + N L+ MY +CGS+   R++FD +P++ L++WN MIS Y  +G
Sbjct: 621 EIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHG 680

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
                + L+++ +++G+ P+ +TF  +LS+C+H G    G +  + ++   +  +P +  
Sbjct: 681 FGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTE-YAMDPAVEQ 739

Query: 188 --ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVA 233
              ++++ +R G   +     + MP       W +++G   IH + ++A
Sbjct: 740 YACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLA 788



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 116/231 (50%), Gaps = 10/231 (4%)

Query: 77  GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP-----EKGLITWNAMISGYAQNGLATH 131
           G+  D    N +++ Y + G  +   K F ++      +  +++W A+I+G  QNG    
Sbjct: 286 GVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFE 345

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQ-IQANGFGSNPFLNNALI 190
            L ++R+M   GV P+++T    +S+C +L     G E+    I+     S+  + N+L+
Sbjct: 346 ALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLV 405

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           + YA+C +++ AR  F  + +  +VSW A++ GY + G  E A++L  EM   GI PD  
Sbjct: 406 DYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDII 465

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301
            +  +++  +  G     LE+F  M +  G+ P   + T +   L   GQ+
Sbjct: 466 TWNGLVTGFTQYGDGKAALEFFQRM-HSMGMDP---NTTTISGALAACGQV 512



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 133/334 (39%), Gaps = 74/334 (22%)

Query: 30  EAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLM 89
           E + LF  M  +GV  +      +   C +     +G   +   +  G + +  V   ++
Sbjct: 173 ETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSIL 232

Query: 90  TMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
            M++KCG +D  R+ F+++  K +  WN M+SGY   G     L+   +MK  GV PD V
Sbjct: 233 DMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQV 292

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
           T+                                   NA+I+ YA+ G  ++A   F  M
Sbjct: 293 TW-----------------------------------NAIISGYAQSGQFEEASKYFLEM 317

Query: 210 P-----RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL 264
                 +  VVSWTA+I G   +G+   A+ +F +M+  G++P+     S +SAC++  L
Sbjct: 318 GGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSL 377

Query: 265 TDKGLEY----------------------FYG-------MKNKYGL--QPGPEHYTCMVD 293
              G E                       +Y         + K+G+  Q     +  M+ 
Sbjct: 378 LRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLA 437

Query: 294 LLGRAGQLNEALELIESML---VEPDGAVWGALL 324
                G   EA+EL+  M    +EPD   W  L+
Sbjct: 438 GYALRGSHEEAIELLSEMKFQGIEPDIITWNGLV 471



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 9/165 (5%)

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
           +  +L  C  L    +G +V  Q+  NG     FL + L+ +Y + G ++ AR +FD M 
Sbjct: 92  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 151

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270
            + V SWTAI+  Y   G  E  ++LF  M+  G+RPD   F  V  ACS       G +
Sbjct: 152 ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 211

Query: 271 YFYGMKNKYGLQPGPEHYTC----MVDLLGRAGQLNEALELIESM 311
            +      Y L  G E  +C    ++D+  + G+++ A    E +
Sbjct: 212 VY-----DYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEI 251


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/512 (40%), Positives = 322/512 (62%), Gaps = 11/512 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++I+ Y  N     A   F KM+  G + + +T++ L  I             H  
Sbjct: 383 VSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGF 442

Query: 73  CVKFG-LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
            ++ G L  D  +GN ++ MY K G +D   K+F+ +  K +I+WN +I+GYAQNGLA+ 
Sbjct: 443 IMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASE 502

Query: 132 VLELYREMKSLG-VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
            +E+Y+ M+    + P+  T+V +L + AH+GA   G+ +  ++       + F+   LI
Sbjct: 503 AIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLI 562

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           ++Y +CG L  A ++F  +P+++ V+W AII  +GIHGH E  ++LF EML  G++PD  
Sbjct: 563 DVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHV 622

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            FVS+LSACSH+G  ++G ++ + +  +YG++P  +HY CMVDLLGRAG L  A   I+ 
Sbjct: 623 TFVSLLSACSHSGFVEEG-KWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKD 681

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M ++PD ++WGALLGAC+IH N+EL + A  ++ +++  N GYYVLLSNIY+     +G+
Sbjct: 682 MPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGV 741

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD----KLENL--V 424
            +VR + RER LKK PG+S +E+  +V +F  G+++H +  EIY  L     K+++L  +
Sbjct: 742 DKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYI 801

Query: 425 QEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
            ++    +  +++ +EH+  +  HSE+LAIAFGII+T P + I + KNLR+CGDCH   K
Sbjct: 802 PDYSFVLQDVEEDEKEHILTS--HSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATK 859

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +S+I  R+ +VRD+ RFHHFK G CSC DYW
Sbjct: 860 FISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 147/311 (47%), Gaps = 5/311 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +N++IS YV N    EA+  F ++     +  +  T   +L  C   G L  G   HC  
Sbjct: 185 WNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRRIHCWA 241

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
            K G   +  V   L+ MY + G     R LFD +P + + +WNAMISG  QNG A   L
Sbjct: 242 FKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQAL 301

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
           ++  EM+  G+  + VT V +L  C  LG  S  + +   +  +G   + F++NALINMY
Sbjct: 302 DVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMY 361

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
           A+ GNL+ AR  F  M    VVSW +II  Y  +     A   F +M  +G +PD    V
Sbjct: 362 AKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLV 421

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           S+ S  + +            +  +  L         +VD+  + G L+ A ++ E +LV
Sbjct: 422 SLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILV 481

Query: 314 EPDGAVWGALL 324
           + D   W  L+
Sbjct: 482 K-DVISWNTLI 491



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 153/323 (47%), Gaps = 12/323 (3%)

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
           C H + V  G      +   L+ +Y   G V   R  FDQ+P+K + TWN+MIS Y  NG
Sbjct: 137 CLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNG 196

Query: 128 LATHVLELYREMKSLG-VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
                +  + ++  +  + PD  TF  VL +C   G    G  +       GF  N F+ 
Sbjct: 197 HFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRRIHCWAFKLGFQWNVFVA 253

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
            +LI+MY+R G    AR++FD MP + + SW A+I G   +G+   A+ + DEM   GI+
Sbjct: 254 ASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIK 313

Query: 247 PDGTAFVSVLSACSHAG-LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
            +    VS+L  C   G ++   L + Y +  K+GL+        ++++  + G L +A 
Sbjct: 314 MNFVTVVSILPVCPQLGDISTAMLIHLYVI--KHGLEFDLFVSNALINMYAKFGNLEDAR 371

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL--LSNIYSE 363
           +  + M +  D   W +++ A + + +   A   F K ++L         L  L++I ++
Sbjct: 372 KAFQQMFIT-DVVSWNSIIAAYEQNDDPVTAHGFFVK-MQLNGFQPDLLTLVSLASIVAQ 429

Query: 364 ARNLDGIMRVR-MMMRERRLKKD 385
           +R+      V   +MR   L +D
Sbjct: 430 SRDCKNSRSVHGFIMRRGWLMED 452



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 55/110 (50%), Gaps = 1/110 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V +NA+IS + ++    + + LFG+M ++GV+ + VT + LL  C   G++  G  C  
Sbjct: 586 SVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFR 645

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP-EKGLITWNAMI 120
           +  ++G+        C++ +  + G ++        +P +     W A++
Sbjct: 646 LMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALL 695


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/507 (40%), Positives = 308/507 (60%), Gaps = 5/507 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           + A+ISGYV +   +EA+ LF  M R    + N  T+   L        L +G   H   
Sbjct: 170 WTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYI 229

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           ++ GLD D  V + L  MY KCGS++  R +FD++ ++ ++TW AMI  Y Q+G      
Sbjct: 230 MRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGF 289

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
           +L+ ++   G+ P+  TF GVL++CA+  +  +G +V   +   GF    F  +AL++MY
Sbjct: 290 DLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMY 349

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
           ++CGN+  A  +F   P+  + SWT++I GY  +G  + A++ F+ ++KSG +PD   FV
Sbjct: 350 SKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFV 409

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
            VLSAC+HAGL DKGL+YF+ +K +YGL    +HY C++DLL R+GQ +EA  +I  M +
Sbjct: 410 GVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSM 469

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
           +PD  +W +LLG C+IH N++LA+ A   + ++EP N   YV L+NIY+ A     + ++
Sbjct: 470 KPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKI 529

Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS 433
           R  M +R + K PG S++ +K  VH+F+VGD +H ++ EI   L KL   ++E      +
Sbjct: 530 RKTMDDRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEINEFLGKLSKRMKEEGFVPDT 589

Query: 434 D----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKI 489
           +        E+   +   HSEKLA+AFGII+T  GT I V KNLR C DCH  IK +SKI
Sbjct: 590 NFVLHDVEDEQKEQNLSYHSEKLAVAFGIISTPEGTPIKVFKNLRTCVDCHTAIKFISKI 649

Query: 490 VDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +R+ IVRD+ RFH F+ G CSC+DYW
Sbjct: 650 TNRKIIVRDSNRFHFFEDGHCSCRDYW 676



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 151/330 (45%), Gaps = 38/330 (11%)

Query: 28  VSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNC 87
           + EA+ +  ++ +    + S     L+  C+    L  G   H      G      + N 
Sbjct: 55  LKEALQILHQIDKPSASVYST----LIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNR 110

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL------------------- 128
           L+ MY KC S+   +KLFD++PE+ L +WN +ISGYA+ GL                   
Sbjct: 111 LLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSW 170

Query: 129 ------------ATHVLELYREMK-SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175
                           LEL+R MK S     +  T    L++ A +    +G E+   I 
Sbjct: 171 TAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIM 230

Query: 176 ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQ 235
             G  S+  + +AL +MY +CG++++AR IFD M  + +V+WTA+I  Y   G  +    
Sbjct: 231 RTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFD 290

Query: 236 LFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295
           LF ++L+SGIRP+   F  VL+AC++    + G +  +G   + G  P     + +V + 
Sbjct: 291 LFADLLRSGIRPNEFTFSGVLNACANQTSEELG-KKVHGYMTRVGFDPFSFAASALVHMY 349

Query: 296 GRAGQLNEALELIESMLVEPDGAVWGALLG 325
            + G +  A E +     +PD   W +L+ 
Sbjct: 350 SKCGNMVSA-ERVFKETPQPDLFSWTSLIA 378



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 126/267 (47%), Gaps = 7/267 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD+ +      V + A+I  Y  +    E   LF  +   G+  N  T   +L  C + 
Sbjct: 260 IFDKMVDRD--IVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQ 317

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
               LG   H    + G D      + L+ MY KCG++    ++F + P+  L +W ++I
Sbjct: 318 TSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLI 377

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN-GF 179
           +GYAQNG     +  +  +   G  PD +TFVGVLS+CAH G    GL+    I+   G 
Sbjct: 378 AGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGL 437

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKT-VVSWTAIIGGYGIHGHGEVAVQLFD 238
                    +I++ AR G   +A  I   M  K     W +++GG  IHG+ ++A +  +
Sbjct: 438 THTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAE 497

Query: 239 EMLKSGIRPDGTA-FVSVLSACSHAGL 264
            + +  I P+  A +V++ +  + AG+
Sbjct: 498 ALFE--IEPENPATYVTLANIYATAGM 522


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/538 (39%), Positives = 315/538 (58%), Gaps = 41/538 (7%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           TV +  LI G++     SE++ LF +MR + + ++   +  ++  C +   + L    H 
Sbjct: 360 TVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHS 419

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGS-------------------------------VDY 100
           + +K G      + N L++MY KCG+                               +  
Sbjct: 420 LSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGK 479

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM-KSLGVCPDAVTFVGVLSSCA 159
            R+ FD +  + +ITWNAM+  Y Q+G     L++Y  M     V PD VT+V +   CA
Sbjct: 480 AREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCA 539

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
            +GA+ +G ++       G   +  + NA+I MY++CG + +AR IFD + RK +VSW A
Sbjct: 540 DMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNA 599

Query: 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279
           +I GY  HG G+ A+++FD+MLK G +PD  ++V+VLS+CSH+GL  +G  YF  +K  +
Sbjct: 600 MITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDH 659

Query: 280 GLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELA 339
            + PG EH++CMVDLL RAG L EA  LI+ M ++P   VWGALL ACK H N ELAELA
Sbjct: 660 NVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELAELA 719

Query: 340 FGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHL 399
              +  L+  ++G Y+LL+ IY++A       +VR +MR++ +KK+PGYS++E+K +VH+
Sbjct: 720 AKHLFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYSWMEVKNKVHV 779

Query: 400 FMVGDRNHHQTVEIYRMLDKL-ENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGI 458
           F   D +H Q + I   LD+L E + Q   G  R++   SE H      HSEKLA+AFGI
Sbjct: 780 FKAEDVSHPQVIAIREKLDELMEKIAQL--GYVRTESLRSEIH------HSEKLAVAFGI 831

Query: 459 INTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +N      I +MKNLRICGDCH  IKL+S +  R+F++RDA RFHHFK G CSC DYW
Sbjct: 832 MNLPAWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFKGGSCSCGDYW 889



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 162/345 (46%), Gaps = 36/345 (10%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEI-NSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +N L+SGY  +    +A+  F  MR  G  + N+ T  C +  C   G+  + +    + 
Sbjct: 129 WNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLL 188

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV------------------------- 108
            KFG   D  V   ++ M+V+CG+VD+  K F Q+                         
Sbjct: 189 TKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHAL 248

Query: 109 ------PEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162
                 PE+ +++WN M+S  +Q+G A   L +  +M + GV  D+ T+   L++CA L 
Sbjct: 249 ELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLS 308

Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIG 222
           +   G ++  Q+  +    +P++ +A++ +YA+CG  K+AR +F  +  +  VSWT +IG
Sbjct: 309 SLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIG 368

Query: 223 GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL-EYFYGMKNKYGL 281
           G+  +G    +++LF++M    +  D  A  +++S CS+    D  L    + +  K G 
Sbjct: 369 GFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNR--MDMCLARQLHSLSLKSGH 426

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
                    ++ +  + G L  A E I S + E D   W  +L A
Sbjct: 427 TRAVVISNSLISMYAKCGNLQNA-ESIFSSMEERDIVSWTGMLTA 470



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 149/282 (52%), Gaps = 7/282 (2%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLG 66
           ST   + +NA++  Y+ +    + + ++  M  E+ V  + VT + L   C D G   LG
Sbjct: 488 STRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLG 547

Query: 67  MCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQN 126
                  VK GL LD SV N ++TMY KCG +   RK+FD +  K L++WNAMI+GY+Q+
Sbjct: 548 DQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMITGYSQH 607

Query: 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
           G+    +E++ +M   G  PD +++V VLSSC+H G    G      ++ +    +P L 
Sbjct: 608 GMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRD-HNVSPGLE 666

Query: 187 --NALINMYARCGNLKKARAIFDGMPRK-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
             + ++++ AR GNL +A+ + D MP K T   W A++     HG+ E+A +L  + L  
Sbjct: 667 HFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELA-ELAAKHLFD 725

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
              PD   ++ +    + AG +    +    M++K G++  P
Sbjct: 726 LDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDK-GIKKNP 766



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/412 (22%), Positives = 178/412 (43%), Gaps = 38/412 (9%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N ++S    +    EA+S+   M  +GV ++S T    L  C     L  G   H  
Sbjct: 260 VSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQ 319

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++    +D  V + ++ +Y KCG     R++F  + ++  ++W  +I G+ Q G  +  
Sbjct: 320 VIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSES 379

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           LEL+ +M++  +  D      ++S C++     +  ++      +G      ++N+LI+M
Sbjct: 380 LELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISM 439

Query: 193 YARCGNLK-------------------------------KARAIFDGMPRKTVVSWTAII 221
           YA+CGNL+                               KAR  FDGM  + V++W A++
Sbjct: 440 YAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAML 499

Query: 222 GGYGIHGHGEVAVQLFDEML-KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           G Y  HG  E  ++++  ML +  + PD   +V++   C+  G    G +   G   K G
Sbjct: 500 GAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLG-DQITGHTVKVG 558

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           L         ++ +  + G+++EA ++ +  L   D   W A++     H   + A   F
Sbjct: 559 LILDTSVMNAVITMYSKCGRISEARKIFD-FLSRKDLVSWNAMITGYSQHGMGKQAIEIF 617

Query: 341 GKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSY 390
             ++K   +P    Y  +LS+        +G     M+ R+  +   PG  +
Sbjct: 618 DDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVS--PGLEH 667



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 119/273 (43%), Gaps = 36/273 (13%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG-V 144
           N +M  Y K GS+    +LF ++P + + +WN ++SGY Q+G     +E +  M+  G  
Sbjct: 99  NIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDS 158

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG------- 197
            P+A TF   + SC  LG H V L++   +   GF  +P +   +++M+ RCG       
Sbjct: 159 LPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASK 218

Query: 198 ------------------------NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVA 233
                                    +  A  +F+ MP + VVSW  ++      G    A
Sbjct: 219 QFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREA 278

Query: 234 VQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL-EYFYGMKNKYGLQPGPEHYTCMV 292
           + +  +M   G+R D T + S L+AC  A L+  G  +  +    +      P   + MV
Sbjct: 279 LSVAVDMHNRGVRLDSTTYTSSLTAC--AKLSSLGWGKQLHAQVIRSLPCIDPYVASAMV 336

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           +L  + G   EA  +  S L + +   W  L+G
Sbjct: 337 ELYAKCGCFKEARRVFSS-LRDRNTVSWTVLIG 368



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           N   +N ++N YA+ G+L  A  +F  MPR+ V SW  ++ GY   G    A++ F  M 
Sbjct: 94  NVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMR 153

Query: 242 KSGIR-PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           +SG   P+   F   + +C   G  +  L+   G+  K+G Q  P+  T +VD+  R G 
Sbjct: 154 RSGDSLPNAFTFGCAMKSCGALGWHEVALQ-LLGLLTKFGFQGDPDVATGIVDMFVRCGA 212

Query: 301 LNEA 304
           ++ A
Sbjct: 213 VDFA 216


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/510 (40%), Positives = 310/510 (60%), Gaps = 20/510 (3%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGY-LWLGMCCHCI 72
           + A++SGY  N ++ EA  +F  M E+  V  N++    +    +D    L+  M C  +
Sbjct: 258 WTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNV 317

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
                     +  N ++T Y + G ++  + +FD +P+K  ++W AM++ Y+Q G +   
Sbjct: 318 ----------ASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEET 367

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+L+ EM   G   +   F  VLS+CA + A   G+++  ++   G+G   F+ NAL+ M
Sbjct: 368 LQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAM 427

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CGN++ AR  F+ M  + VVSW  +I GY  HG G+ A+++FD M  +  +PD    
Sbjct: 428 YFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITL 487

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           V VL+ACSH+GL +KG+ YFY M + +G+   PEHYTCM+DLLGRAG+L EA +L++ M 
Sbjct: 488 VGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMP 547

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            EPD  +WGALLGA +IH+N EL   A  K+ +LEP N G YVLLSNIY+ +       +
Sbjct: 548 FEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARK 607

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           +R+MM ER +KK PG+S++E++ +VH F  GD  H +  +IY  L+ L+  +++      
Sbjct: 608 MRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSA 667

Query: 433 SD------QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
           +D      ++  +EH+   + HSEKLA+A+GI+N  PG  I V+KNLR+CGDCH   K +
Sbjct: 668 TDMVLHDVEEEEKEHM--LKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYI 725

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           S I  R  ++RD+ RFHHF+ G CSC DYW
Sbjct: 726 SAIEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 123/248 (49%), Gaps = 4/248 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V + A+++ Y       E + LF +M   G  +N     C+L  C D   L  GM  H 
Sbjct: 348 AVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHG 407

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             ++ G  +   VGN L+ MY KCG+++  R  F+++ E+ +++WN MI+GYA++G    
Sbjct: 408 RLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKE 467

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN-GFGSNPFLNNALI 190
            LE++  M++    PD +T VGVL++C+H G    G+     +  + G  + P     +I
Sbjct: 468 ALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMI 527

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++  R G L +A  +   MP       W A++G   IH + E+     +++ +  + P+ 
Sbjct: 528 DLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFE--LEPEN 585

Query: 250 TAFVSVLS 257
                +LS
Sbjct: 586 AGMYVLLS 593



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 141/317 (44%), Gaps = 30/317 (9%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVT-MLCLLPICVDPGYLWLGMCC 69
           T  YNA+++GY  N  +  A SLF  + R      N++   L +     D   L+  M  
Sbjct: 69  TSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPV 128

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
                      D    N +++ +   G V   R  FD  PEK  ++WN M++ Y +NG  
Sbjct: 129 R----------DSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRV 178

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
                L+          DA+++  ++S     G  S   E+  ++     G +    N +
Sbjct: 179 EEARGLFNSRTEW----DAISWNALMSGYVQWGKMSEARELFDRMP----GRDVVSWNIM 230

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++ YAR G++ +AR +FD  P + V +WTA++ GY  +G  E A ++FD M +     + 
Sbjct: 231 VSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NA 286

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
            ++ ++++A     + D+  E F  M  +         +  M+    +AG L EA  + +
Sbjct: 287 VSWNAMVAAYIQRRMMDEAKELFNMMPCR-----NVASWNTMLTGYAQAGMLEEAKAVFD 341

Query: 310 SMLVEPDGAVWGALLGA 326
           +M  + D   W A+L A
Sbjct: 342 TM-PQKDAVSWAAMLAA 357



 Score = 46.2 bits (108), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 80/187 (42%), Gaps = 17/187 (9%)

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
           +N  I  + R G +  A  +F  MPR++  ++ A++ GY  +G   +A  LF    ++  
Sbjct: 41  SNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLF----RAIP 96

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
           RPD  ++ ++L    HA      L    G+ ++  ++     Y  M+      G ++ A 
Sbjct: 97  RPDNYSYNTLL----HALAVSSSLADARGLFDEMPVRDSVT-YNVMISSHANHGLVSLAR 151

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI----- 360
              + +  E D   W  +L A   +  VE A   F    + + ++  +  L+S       
Sbjct: 152 HYFD-LAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAIS--WNALMSGYVQWGK 208

Query: 361 YSEARNL 367
            SEAR L
Sbjct: 209 MSEAREL 215


>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
 gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/530 (40%), Positives = 312/530 (58%), Gaps = 18/530 (3%)

Query: 4   ESIKSTHLTVCYNALISGYVLNSLVSEA---------VSLFGKMREQGVEINSVTMLCLL 54
            +I  THL      L   ++ NS++            V+ + +M    V  ++ T   ++
Sbjct: 55  RAIAYTHLLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVI 114

Query: 55  PICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLI 114
             C D   L +G   HC  V  G  LD  V   L+T Y KCG ++  R++FD++PEK ++
Sbjct: 115 KSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIV 174

Query: 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
            WN+++SG+ QNGLA   ++++ +M+  G  PD+ TFV +LS+CA  GA S+G  V Q I
Sbjct: 175 AWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYI 234

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
            + G   N  L  ALIN+Y+RCG++ KAR +FD M    V +WTA+I  YG HG+G+ AV
Sbjct: 235 ISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAV 294

Query: 235 QLFDEMLKS-GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293
           +LF++M    G  P+   FV+VLSAC+HAGL ++G   +  M   Y L PG EH+ CMVD
Sbjct: 295 ELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVD 354

Query: 294 LLGRAGQLNEALELIESMLVEPDG---AVWGALLGACKIHKNVELAELAFGKVIKLEPMN 350
           +LGRAG L+EA + I  +         A+W A+LGACK+H+N +L      ++I LEP N
Sbjct: 355 MLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDN 414

Query: 351 TGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQT 410
            G++V+LSNIY+ +   D +  +R  M    L+K  GYS +E++ + ++F +GD +H +T
Sbjct: 415 PGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQET 474

Query: 411 VEIYRMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTE 466
            EIYR L+ L +  +E      S+    Q   EE       HSEKLA+AFG++ T     
Sbjct: 475 GEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTV-DVA 533

Query: 467 IVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           I ++KNLRIC DCH   K +S + +RQ  VRD  RFHHF++G CSC DYW
Sbjct: 534 ITIVKNLRICEDCHSAFKYISIVSNRQITVRDKLRFHHFQNGSCSCLDYW 583



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/256 (31%), Positives = 134/256 (52%), Gaps = 2/256 (0%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L+T+     ++ Y   LF  VP      +N++I   ++  L  H +  YR M S  V P 
Sbjct: 47  LITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPS 106

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
             TF  V+ SCA L A  +G  V      +GFG + ++  AL+  Y++CG+++ AR +FD
Sbjct: 107 NYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFD 166

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            MP K++V+W +++ G+  +G  + A+Q+F +M +SG  PD   FVS+LSAC+  G    
Sbjct: 167 RMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSL 226

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           G  + +      GL    +  T +++L  R G + +A E+ + M  E + A W A++ A 
Sbjct: 227 G-SWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKM-KETNVAAWTAMISAY 284

Query: 328 KIHKNVELAELAFGKV 343
             H   + A   F K+
Sbjct: 285 GTHGYGQQAVELFNKM 300


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/512 (39%), Positives = 311/512 (60%), Gaps = 14/512 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICV----DPGYLWLGMC 68
           V +N+L+ G+V + L  EA+ LF  M  + ++I+  T   +L  CV    +P  +     
Sbjct: 332 VSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSV----- 386

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            H + +K G +    V N L+ MY K G +D    +F+++ EK +I+W ++++GYAQN  
Sbjct: 387 -HGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNS 445

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
               L+++ +M+  GV PD      +LS+CA L     G +V      +G   +  + N+
Sbjct: 446 HEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNS 505

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           L+ MYA+CG L  A AIF  M  K V++WTAII GY  +G G  +++ +D M+ SG RPD
Sbjct: 506 LVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPD 565

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
              F+ +L ACSHAGL D+G +YF  M   YG++PGPEHY CM+DL GR+G+L+EA +L+
Sbjct: 566 FITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLL 625

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
           + M V+PD  VW +LL AC++H+N+ELAE A   + +LEPMN   YV+LSN+YS +R  +
Sbjct: 626 DQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPMNAMPYVMLSNMYSASRKWN 685

Query: 369 GIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH- 427
            + ++R +M+ + + K+PG S++E+  RV+ F+  DR H +  EIY  +D++   ++E  
Sbjct: 686 DVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGHPREAEIYTKIDEIILRIKEAG 745

Query: 428 ---DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
              D +      + E        HSEKLA+AFG++   P   I + KNLR+CGDCH  +K
Sbjct: 746 YVPDMSFSLHDMDKEGKEVGLAYHSEKLAVAFGLLAAPPSAPIRIFKNLRVCGDCHSAMK 805

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +S++  R  I+RD+  FHHF+ G CSC DYW
Sbjct: 806 YISRVFTRHIILRDSNCFHHFREGECSCGDYW 837



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 107/359 (29%), Positives = 169/359 (47%), Gaps = 44/359 (12%)

Query: 30  EAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLM 89
           EA  LF  MR +G + +  T+  +L +C   G +  G   H   VK G + +  V   L+
Sbjct: 145 EAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLV 204

Query: 90  TMYVKCGSVDYGRKLFD--QVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
            MY KC  V     LF   +   K  + W AM++GYAQNG     +E +R M + GV  +
Sbjct: 205 DMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECN 264

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
             TF  +L++C+ + A   G +V   I  +GFGSN ++ +AL++MYA+CG+LK A+ + +
Sbjct: 265 QYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLE 324

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            M    VVSW +++ G+  HG  E A++LF  M    ++ D   F SVL+ C    +  K
Sbjct: 325 TMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPK 384

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML--------------- 312
            +   +G+  K G +        +VD+  + G ++ A  + E ML               
Sbjct: 385 SV---HGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYA 441

Query: 313 -------------------VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTG 352
                              V PD  +  ++L AC      EL  L FGK + L+ + +G
Sbjct: 442 QNNSHEESLKIFCDMRVTGVNPDQFIVASILSAC-----AELTLLEFGKQVHLDFIKSG 495



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 121/273 (44%), Gaps = 37/273 (13%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM-------------------------- 119
           N L+    K G V+  RKLFD++P+K   +WN M                          
Sbjct: 69  NQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSI 128

Query: 120 -----ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
                ISGY + G      +L+R M+  G      T   VL  C+ LG    G  +   +
Sbjct: 129 TWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFV 188

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP--RKTVVSWTAIIGGYGIHGHGEV 232
             NGF  N F+   L++MYA+C  + +A  +F G+   RK  V WTA++ GY  +G G  
Sbjct: 189 VKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYK 248

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
           AV+ F  M   G+  +   F ++L+ACS       G E  +G   K G        + +V
Sbjct: 249 AVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFG-EQVHGFIVKSGFGSNVYVQSALV 307

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAV-WGALL 324
           D+  + G L  A  ++E+M  E D  V W +L+
Sbjct: 308 DMYAKCGDLKNAKNMLETM--EDDDVVSWNSLM 338



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 65/173 (37%), Gaps = 33/173 (19%)

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD----- 238
           +  N L+N  ++ G +  AR +FD MP+K   SW  +I  Y   G    A +LFD     
Sbjct: 66  YQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCK 125

Query: 239 --------------------------EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF 272
                                      M   G +       SVL  CS  GL   G E  
Sbjct: 126 SSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTG-EMI 184

Query: 273 YGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAV-WGALL 324
           +G   K G +      T +VD+  +   ++EA  L + +  +    V W A++
Sbjct: 185 HGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMV 237


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/509 (39%), Positives = 307/509 (60%), Gaps = 6/509 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  +I GY  NS + +A  LF  M+E+G++ + +T + ++  C     L L    H  
Sbjct: 330 VSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQ 389

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            V+ G   D  V   L+ MY KCG++   R++FD +  + +++W+AMI  Y +NG     
Sbjct: 390 VVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEA 449

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            E +  MK   V PD VT++ +L++C HLGA  +G+E+  Q       S+  + NALINM
Sbjct: 450 FETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINM 509

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
             + G++++AR IF+ M ++ VV+W  +IGGY +HG+   A+ LFD MLK   RP+   F
Sbjct: 510 NVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTF 569

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           V VLSACS AG  ++G  +F  + +  G+ P  E Y CMVDLLGRAG+L+EA  LI  M 
Sbjct: 570 VGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMP 629

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           ++P+ ++W  LL AC+I+ N+++AE A  + +  EP +   YV LS++Y+ A   + + +
Sbjct: 630 LKPNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAK 689

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR +M  R ++K+ G +++E++G++H F+V DR+H Q  EIY  L +L   ++  +G   
Sbjct: 690 VRKVMESRGVRKEQGCTWIEVEGKLHTFVVEDRSHPQAGEIYAELARLMTAIKR-EGYIP 748

Query: 433 SDQK-----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
             Q        +E       HSEKLAIA+G+++   G  I + KNLR+CGDCH   K +S
Sbjct: 749 VTQNVLHNVGEQEKEEAISYHSEKLAIAYGVLSLPSGAPIRIFKNLRVCGDCHSASKFIS 808

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K+  R+ I RDA+RFHHFK+G CSC DYW
Sbjct: 809 KVTGREIIARDASRFHHFKNGVCSCGDYW 837



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 109/346 (31%), Positives = 189/346 (54%), Gaps = 4/346 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N +I GY  +    +A  LF +M+++G + N ++ L +L  C  P  L  G   H  C+
Sbjct: 231 FNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCM 290

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             GL  D  V   L+ MY+ CGS++  R++FD++  + +++W  MI GYA+N        
Sbjct: 291 NTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFG 350

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+  M+  G+ PD +T++ ++++CA     S+  E+  Q+   GFG++  ++ AL++MYA
Sbjct: 351 LFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYA 410

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG +K AR +FD M R+ VVSW+A+IG Y  +G GE A + F  M ++ + PD   +++
Sbjct: 411 KCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYIN 470

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           +L+AC H G  D G+E  Y    K  L         ++++  + G +  A  + E+M V+
Sbjct: 471 LLNACGHLGALDLGME-IYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENM-VQ 528

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
            D   W  ++G   +H N   A   F +++K    P +  +  +LS
Sbjct: 529 RDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLS 574



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 101/314 (32%), Positives = 168/314 (53%), Gaps = 2/314 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+I+GY     V EA +LF +M ++ +E + +T L +L  C  P  L LG   H  
Sbjct: 128 VTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQ 187

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G   DF +G  L++MYVK GS+D  R++FD + ++ + T+N MI GYA++G     
Sbjct: 188 VIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKA 247

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            +L+  M+  G  P+ ++F+ +L  C+   A + G  V  Q    G   +  +  ALI M
Sbjct: 248 FQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRM 307

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y  CG+++ AR +FD M  + VVSWT +I GY  + + E A  LF  M + GI+PD   +
Sbjct: 308 YMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITY 367

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + +++AC+ +       E  +    + G        T +V +  + G + +A ++ ++M 
Sbjct: 368 IHIINACASSADLSLARE-IHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAM- 425

Query: 313 VEPDGAVWGALLGA 326
              D   W A++GA
Sbjct: 426 SRRDVVSWSAMIGA 439



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 149/303 (49%), Gaps = 8/303 (2%)

Query: 37  KMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCG 96
           ++ E    I+S T + L   C+      LG       ++ G  L+    N L+ ++  CG
Sbjct: 51  RLGEGSNHIDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICG 110

Query: 97  SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS 156
           ++   R+ FD V  K ++TWNA+I+GYAQ G       L+R+M    + P  +TF+ VL 
Sbjct: 111 NMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLD 170

Query: 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS 216
           +C+      +G E   Q+   GF S+  +  AL++MY + G++  AR +FDG+ ++ V +
Sbjct: 171 ACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVST 230

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
           +  +IGGY   G GE A QLF  M + G +P+  +F+S+L  CS    T + L +   + 
Sbjct: 231 FNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCS----TPEALAWGKAVH 286

Query: 277 NK---YGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNV 333
            +    GL       T ++ +    G +  A  + + M V  D   W  ++     + N+
Sbjct: 287 AQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVR-DVVSWTVMIRGYAENSNI 345

Query: 334 ELA 336
           E A
Sbjct: 346 EDA 348



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 102/236 (43%), Gaps = 32/236 (13%)

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF 206
           D+ T+V +   C  L    +G +V   I  +G   N +  N LI +++ CGN+ +AR  F
Sbjct: 60  DSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTF 119

Query: 207 DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD 266
           D +  KTVV+W AII GY   GH + A  LF +M+   + P    F+ VL ACS      
Sbjct: 120 DSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLK 179

Query: 267 KGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
            G E F+    K G        T +V +  + G ++ A ++ +  L + D + +  ++G 
Sbjct: 180 LGKE-FHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDG-LYKRDVSTFNVMIGG 237

Query: 327 CKIHKNVELA------------------------------ELAFGKVIKLEPMNTG 352
                + E A                               LA+GK +  + MNTG
Sbjct: 238 YAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTG 293


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/472 (44%), Positives = 292/472 (61%), Gaps = 10/472 (2%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           LL  C+    +  G   H      G   D  +   L+ +Y  C S+   R LFD++P+  
Sbjct: 81  LLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHN 140

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
           +  WN +I GYA NG     ++LY +M   G+ PD  TF  VL +CA L A   G E+ +
Sbjct: 141 IFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHE 200

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT---VVSWTAIIGGYGIHGH 229
            +   G+  + F+  ALI+MYA+CG +  AR +FD +  +    VVSW A+I GY +HGH
Sbjct: 201 HVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITGYAMHGH 260

Query: 230 GEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYT 289
              A+ LF+EM +   +PD   FV VLSACSH GL ++G  +F  M   Y + P  +HYT
Sbjct: 261 ATEALDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYT 319

Query: 290 CMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPM 349
           CMVDLLG +G+L+EA  LI  M V PD  VWGALL +CKIH NVEL E+A  ++I+LEP 
Sbjct: 320 CMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPD 379

Query: 350 NTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQ 409
           + G YV+LSNIY++A   +G+ ++R +M +RRLKK    S++E+K +VH F+ GD +H  
Sbjct: 380 DAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPL 439

Query: 410 TVEIYRMLDKLENLVQE-----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPG 464
           + EIY  L+++  L++E       G+   D ++ +E  N    HSE+LAIAFG+I+T PG
Sbjct: 440 SDEIYSELERVGGLMKEAGYSPSTGSVFHDVED-DEKANMVCSHSERLAIAFGLISTPPG 498

Query: 465 TEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           T +++ KNLRIC DCH+ IK +SKI +R+  VRD  R+HHFK G CSC DYW
Sbjct: 499 TRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 550



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 128/267 (47%), Gaps = 20/267 (7%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD   K  H    +N LI GY  N     AV L+ +M + G+  ++ T   +L  C   
Sbjct: 132 LFDRIPK--HNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAAL 189

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG---LITWN 117
             +  G   H   V+ G + D  VG  L+ MY KCG V   R++FD++  +    +++WN
Sbjct: 190 SAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWN 249

Query: 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVG-LEVEQQIQA 176
           AMI+GYA +G AT  L+L+ EM  +   PD +TFVGVLS+C+H G    G +  E  I+ 
Sbjct: 250 AMITGYAMHGHATEALDLFEEMNRVAK-PDHITFVGVLSACSHGGLLEEGWMFFETMIRD 308

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGM---PRKTVVSWTAIIGGYGIHGH---G 230
                       ++++    G L +A  +   M   P   V  W A++    IH +   G
Sbjct: 309 YKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGV--WGALLNSCKIHANVELG 366

Query: 231 EVAVQLFDEMLKSGIRPDGTAFVSVLS 257
           E+A++   E+      PD      +LS
Sbjct: 367 EIALERLIEL-----EPDDAGNYVILS 388



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 118/254 (46%), Gaps = 14/254 (5%)

Query: 140 KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNL 199
           +S  + P    +  +L SC    A   G ++  Q+   GFG +  +   L+N+Y  C +L
Sbjct: 67  ESTCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSL 126

Query: 200 KKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC 259
             AR +FD +P+  +  W  +I GY  +G  E AVQL+ +M   G+ PD   F  VL AC
Sbjct: 127 SSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKAC 186

Query: 260 SHAGLTDKGLEYFYGMKNKYGLQPGPEHY----TCMVDLLGRAGQLNEALELIESMLVEP 315
           +     + G E      +++ +Q G E        ++D+  + G +  A E+ + +LV  
Sbjct: 187 AALSAIEHGREI-----HEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRD 241

Query: 316 DGAV--WGALLGACKIHKNVELAELAFGKVIKL-EPMNTGYYVLLSNIYSEARNLDGIMR 372
              V  W A++    +H +   A   F ++ ++ +P +  +  +LS         +G M 
Sbjct: 242 AVLVVSWNAMITGYAMHGHATEALDLFEEMNRVAKPDHITFVGVLSACSHGGLLEEGWMF 301

Query: 373 VRMMMRERRLKKDP 386
              M+R+ ++  DP
Sbjct: 302 FETMIRDYKI--DP 313


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/510 (40%), Positives = 310/510 (60%), Gaps = 20/510 (3%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGY-LWLGMCCHCI 72
           + A++SGY  N ++ EA  +F  M E+  V  N++    +    +D    L+  M C  +
Sbjct: 133 WTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNV 192

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
                     +  N ++T Y + G ++  + +FD +P+K  ++W AM++ Y+Q G +   
Sbjct: 193 ----------ASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEET 242

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+L+ EM   G   +   F  VLS+CA + A   G+++  ++   G+G   F+ NAL+ M
Sbjct: 243 LQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAM 302

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CGN++ AR  F+ M  + VVSW  +I GY  HG G+ A+++FD M  +  +PD    
Sbjct: 303 YFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITL 362

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           V VL+ACSH+GL +KG+ YFY M + +G+   PEHYTCM+DLLGRAG+L EA +L++ M 
Sbjct: 363 VGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMP 422

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            EPD  +WGALLGA +IH+N EL   A  K+ +LEP N G YVLLSNIY+ +       +
Sbjct: 423 FEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARK 482

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           +R+MM ER +KK PG+S++E++ +VH F  GD  H +  +IY  L+ L+  +++      
Sbjct: 483 MRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSA 542

Query: 433 SD------QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
           +D      ++  +EH+   + HSEKLA+A+GI+N  PG  I V+KNLR+CGDCH   K +
Sbjct: 543 TDMVLHDVEEEEKEHM--LKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYI 600

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           S I  R  ++RD+ RFHHF+ G CSC DYW
Sbjct: 601 SAIEGRLILLRDSNRFHHFRGGSCSCGDYW 630



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 123/248 (49%), Gaps = 4/248 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V + A+++ Y       E + LF +M   G  +N     C+L  C D   L  GM  H 
Sbjct: 223 AVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHG 282

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             ++ G  +   VGN L+ MY KCG+++  R  F+++ E+ +++WN MI+GYA++G    
Sbjct: 283 RLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKE 342

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN-GFGSNPFLNNALI 190
            LE++  M++    PD +T VGVL++C+H G    G+     +  + G  + P     +I
Sbjct: 343 ALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMI 402

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++  R G L +A  +   MP       W A++G   IH + E+     +++ +  + P+ 
Sbjct: 403 DLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFE--LEPEN 460

Query: 250 TAFVSVLS 257
                +LS
Sbjct: 461 AGMYVLLS 468



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 113/241 (46%), Gaps = 18/241 (7%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N +++ +   G V   R  FD  PEK  ++WN M++ Y +NG       L+         
Sbjct: 10  NVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW--- 66

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
            D +++  ++S     G  S   E+  ++     G +    N +++ YAR G++ +AR +
Sbjct: 67  -DVISWNALMSGYVQWGKMSEARELFDRMP----GRDVVSWNIMVSGYARRGDMVEARRL 121

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           FD  P + V +WTA++ GY  +G  E A ++FD M +     +  ++ ++++A     + 
Sbjct: 122 FDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMM 177

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           D+  E F  M  +         +  M+    +AG L EA  + ++M  + D   W A+L 
Sbjct: 178 DEAKELFNMMPCR-----NVASWNTMLTGYAQAGMLEEAKAVFDTM-PQKDAVSWAAMLA 231

Query: 326 A 326
           A
Sbjct: 232 A 232


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/508 (39%), Positives = 307/508 (60%), Gaps = 5/508 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+I+ Y       +   LF +M  +G+  +   +   L        L  G   H  
Sbjct: 152 VSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSVHGY 211

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ G++    V N LM MYVKCG ++  R +FD V +K  I+WN +I GY+++ LA   
Sbjct: 212 AIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANEA 271

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
             L+ EM  L + P+AVT   +L + A L +   G E+       G+  + F+ NAL++M
Sbjct: 272 FTLFNEML-LQLRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVANALVDM 330

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CG L  AR +FD +  K ++SWT +I GYG+HG G  A+ LF++M  SGI+PD  +F
Sbjct: 331 YVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSF 390

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            ++L ACSH+GL D+G  +F  M+N++ ++P  +HY CMVDLL   G L EA E IE+M 
Sbjct: 391 SAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMP 450

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           +EPD ++W +LL  C+IH+NV+LAE     V +LEP NTGYYVLL+NIY+EA   + + +
Sbjct: 451 IEPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFELEPENTGYYVLLANIYAEAERWEAVRK 510

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE--HDGT 430
           ++  +  R L+++ G S++E++G+ H+F   +RNH Q + I   LD +   +QE  HD  
Sbjct: 511 LKNKVGGRGLRENTGCSWIEVRGKAHIFFAENRNHPQGMRIAEFLDDVARRMQEEGHDPK 570

Query: 431 KRSDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
           K+     +++ ++D  +  HS KLA+AFG++N S G  I V KN R+C  CH   K +SK
Sbjct: 571 KKYALMGADDAVHDEALCGHSSKLAVAFGVLNLSQGRPIRVTKNSRVCSHCHEAAKFISK 630

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +  R+ I+RD+ RFHHF+ G CSC+ YW
Sbjct: 631 MCGREIILRDSNRFHHFEEGRCSCRGYW 658



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 165/360 (45%), Gaps = 36/360 (10%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  +     + +N++I G   N L  +AV LF +M  +G E++S T+L ++P CV  
Sbjct: 41  VFDEMPQRD--IISWNSIIGGCASNGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQS 98

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
            Y ++G   H   V+ GL  + S+GN L+ MY  C       K+F  + +K +++W AMI
Sbjct: 99  HYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMI 158

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           + Y + G    V  L++EM   G+ PD       L + A   +   G  V      NG  
Sbjct: 159 TSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIE 218

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
               + NAL+ MY +CG +++AR IFD + +K  +SW  +IGGY        A  LF+EM
Sbjct: 219 EVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEM 278

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKY-------------------- 279
           L   +RP+      +L A +     ++G E + Y ++  Y                    
Sbjct: 279 LLQ-LRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGAL 337

Query: 280 ---------GLQPGPEHYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGAC 327
                            +T M+   G  G+  +A+ L E M    ++PD   + A+L AC
Sbjct: 338 LLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYAC 397



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 147/316 (46%), Gaps = 15/316 (4%)

Query: 66  GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
           G+  H   VK+G     +V N L++ Y K   ++    +FD++P++ +I+WN++I G A 
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
           NGL    +EL+  M   G   D+ T + V+ +C       +G  V       G  S   L
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSL 122

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
            NAL++MY+ C + +    IF  M +K VVSWTA+I  Y   GH +    LF EM   GI
Sbjct: 123 GNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGI 182

Query: 246 RPDGTAFVSVLSA-CSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
           RPD  A  S L A   +  L      + Y ++N  G++        ++++  + G + EA
Sbjct: 183 RPDVFAITSALDAFAGNESLKHGKSVHGYAIRN--GIEEVLPVANALMEMYVKCGYMEEA 240

Query: 305 LELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG----KVIKLEPMNTGYYVLLSNI 360
              I   + + D   W  L+G    +    LA  AF      +++L P      V ++ I
Sbjct: 241 -RFIFDHVTKKDTISWNTLIGG---YSRSNLANEAFTLFNEMLLQLRPNA----VTMACI 292

Query: 361 YSEARNLDGIMRVRMM 376
              A +L  + R R M
Sbjct: 293 LPAAASLSSLERGREM 308


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/524 (40%), Positives = 312/524 (59%), Gaps = 20/524 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+I+GY       EA+++F +M   G   N VT++ +L  C   G    GM  H  
Sbjct: 222 VTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAY 281

Query: 73  CVKF----------GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP--EKGLITWNAMI 120
            +K           G D D  V N L+ MY KC S    R +FD +P  E+ ++TW  MI
Sbjct: 282 SLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMI 341

Query: 121 SGYAQNGLATHVLELYREMKS--LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI-QAN 177
            G+AQ G +   L+L+ EM S   GV P+A T   +L +CAHL A  +G ++   + + +
Sbjct: 342 GGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHH 401

Query: 178 GFGSNP-FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
            + S+  F+ N LINMY++CG++  AR +FD M +K+ +SWT+++ GYG+HG G  A+ +
Sbjct: 402 QYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDI 461

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           FD+M K+G  PD   F+ VL ACSH G+ D+GL YF  M   YGL P  EHY   +DLL 
Sbjct: 462 FDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLA 521

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356
           R G+L++A + ++ M +EP   VW ALL AC++H NVELAE A  K++++   N G Y L
Sbjct: 522 RFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTL 581

Query: 357 LSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRM 416
           +SNIY+ A     + R+R +M++  +KK PG S+V+ +     F VGDR+H  + +IY +
Sbjct: 582 ISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYAL 641

Query: 417 LDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKN 472
           L+ L + ++       ++      + EE  N    HSEKLA+A+G++ T PG  I + KN
Sbjct: 642 LESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRITKN 701

Query: 473 LRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           LR+CGDCH     +SKIVD + +VRD +RFHHFK+G CSC  YW
Sbjct: 702 LRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 745



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 108/416 (25%), Positives = 192/416 (46%), Gaps = 60/416 (14%)

Query: 1   VFDE-SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM------REQGVEINSVTMLCL 53
           +FDE + +     + +N+++S +V +S    A+ LF KM      +      + ++++ +
Sbjct: 67  IFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNI 126

Query: 54  LPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL 113
           LP C     +      H   ++ G  LD  VGN L+  Y KCG ++   K+F+ +  K +
Sbjct: 127 LPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDV 186

Query: 114 ITWNAM-----------------------------------ISGYAQNGLATHVLELYRE 138
           ++WNAM                                   I+GY+Q G +   L ++R+
Sbjct: 187 VSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQ 246

Query: 139 MKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN----------GFGSNPFLNNA 188
           M   G  P+ VT + VLS+CA LGA S G+E+      N          G   +  + NA
Sbjct: 247 MIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNA 306

Query: 189 LINMYARCGNLKKARAIFDGMP--RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS--G 244
           LI+MY++C + K AR+IFD +P   + VV+WT +IGG+  +G    A++LF EM+    G
Sbjct: 307 LIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYG 366

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
           + P+      +L AC+H      G + + Y +++            C++++  + G ++ 
Sbjct: 367 VAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDT 426

Query: 304 ALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLL 357
           A  + +SM  +     W +++    +H     A   F K+ K    P +  + V+L
Sbjct: 427 ARHVFDSM-SQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVL 481



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 123/247 (49%), Gaps = 9/247 (3%)

Query: 38  MREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS 97
           M   G  ++  T+  +L  C +      G   H +    G + +  + N L+ MY +CGS
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 98  VDYGRKLFDQVPEKGL---ITWNAMISGYAQNGLATHVLELYREM------KSLGVCPDA 148
           ++    +FD++ ++G+   I+WN+++S + ++  A   L+L+ +M      K      D 
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208
           ++ V +L +C  L A     EV      NG   + F+ NALI+ YA+CG ++ A  +F+ 
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNM 180

Query: 209 MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
           M  K VVSW A++ GY   G+ + A +LF  M K  I  D   + +V++  S  G + + 
Sbjct: 181 MEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEA 240

Query: 269 LEYFYGM 275
           L  F  M
Sbjct: 241 LNVFRQM 247


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/524 (40%), Positives = 312/524 (59%), Gaps = 20/524 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+I+GY       EA+++F +M   G   N VT++ +L  C   G    GM  H  
Sbjct: 329 VTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAY 388

Query: 73  CVKF----------GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP--EKGLITWNAMI 120
            +K           G D D  V N L+ MY KC S    R +FD +P  E+ ++TW  MI
Sbjct: 389 SLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMI 448

Query: 121 SGYAQNGLATHVLELYREMKS--LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI-QAN 177
            G+AQ G +   L+L+ EM S   GV P+A T   +L +CAHL A  +G ++   + + +
Sbjct: 449 GGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHH 508

Query: 178 GFGSNP-FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
            + S+  F+ N LINMY++CG++  AR +FD M +K+ +SWT+++ GYG+HG G  A+ +
Sbjct: 509 QYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDI 568

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           FD+M K+G  PD   F+ VL ACSH G+ D+GL YF  M   YGL P  EHY   +DLL 
Sbjct: 569 FDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLA 628

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356
           R G+L++A + ++ M +EP   VW ALL AC++H NVELAE A  K++++   N G Y L
Sbjct: 629 RFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTL 688

Query: 357 LSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRM 416
           +SNIY+ A     + R+R +M++  +KK PG S+V+ +     F VGDR+H  + +IY +
Sbjct: 689 ISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYAL 748

Query: 417 LDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKN 472
           L+ L + ++       ++      + EE  N    HSEKLA+A+G++ T PG  I + KN
Sbjct: 749 LESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRITKN 808

Query: 473 LRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           LR+CGDCH     +SKIVD + +VRD +RFHHFK+G CSC  YW
Sbjct: 809 LRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 852



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 108/416 (25%), Positives = 192/416 (46%), Gaps = 60/416 (14%)

Query: 1   VFDE-SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM------REQGVEINSVTMLCL 53
           +FDE + +     + +N+++S +V +S    A+ LF KM      +      + ++++ +
Sbjct: 174 IFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNI 233

Query: 54  LPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL 113
           LP C     +      H   ++ G  LD  VGN L+  Y KCG ++   K+F+ +  K +
Sbjct: 234 LPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDV 293

Query: 114 ITWNAM-----------------------------------ISGYAQNGLATHVLELYRE 138
           ++WNAM                                   I+GY+Q G +   L ++R+
Sbjct: 294 VSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQ 353

Query: 139 MKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN----------GFGSNPFLNNA 188
           M   G  P+ VT + VLS+CA LGA S G+E+      N          G   +  + NA
Sbjct: 354 MIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNA 413

Query: 189 LINMYARCGNLKKARAIFDGMP--RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS--G 244
           LI+MY++C + K AR+IFD +P   + VV+WT +IGG+  +G    A++LF EM+    G
Sbjct: 414 LIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYG 473

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
           + P+      +L AC+H      G + + Y +++            C++++  + G ++ 
Sbjct: 474 VAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDT 533

Query: 304 ALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLL 357
           A  + +SM  +     W +++    +H     A   F K+ K    P +  + V+L
Sbjct: 534 ARHVFDSM-SQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVL 588



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 136/273 (49%), Gaps = 9/273 (3%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +N LI  ++    +  A+++  +M   G  ++  T+  +L  C +      G   H 
Sbjct: 82  AVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHG 141

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL---ITWNAMISGYAQNGL 128
           +    G + +  + N L+ MY +CGS++    +FD++ ++G+   I+WN+++S + ++  
Sbjct: 142 LICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSN 201

Query: 129 ATHVLELYREM------KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN 182
           A   L+L+ +M      K      D ++ V +L +C  L A     EV      NG   +
Sbjct: 202 AWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLD 261

Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
            F+ NALI+ YA+CG ++ A  +F+ M  K VVSW A++ GY   G+ + A +LF  M K
Sbjct: 262 VFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRK 321

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
             I  D   + +V++  S  G + + L  F  M
Sbjct: 322 ENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQM 354



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 122/272 (44%), Gaps = 11/272 (4%)

Query: 83  SVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL 142
           S+G  ++  Y+ CG+ DY   + ++V     + WN +I  + + G     + +   M   
Sbjct: 52  SLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRA 111

Query: 143 GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202
           G   D  T   VL +C  L ++  G      I  NGF SN F+ NAL+ MY+RCG+L++A
Sbjct: 112 GTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 171

Query: 203 RAIFDGMPRK---TVVSWTAIIGGYGIHGHGEVAVQLFDEML------KSGIRPDGTAFV 253
             IFD + ++    V+SW +I+  +    +   A+ LF +M        +  R D  + V
Sbjct: 172 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 231

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           ++L AC       +  E  +G   + G          ++D   + G +  A+++  +M+ 
Sbjct: 232 NILPACGSLKAVPQTKE-VHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVF-NMME 289

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIK 345
             D   W A++       N + A   F  + K
Sbjct: 290 FKDVVSWNAMVAGYSQSGNFKAAFELFKNMRK 321


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/506 (41%), Positives = 310/506 (61%), Gaps = 4/506 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NALI  +  N    +++ LF  M + G++ +  T+  LL  C    +L  G   H   +
Sbjct: 470 WNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFML 529

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           + GL+LD  +G  LM++Y++C S+  G+ +FD++  K L+ WN MI+G++QN L    L+
Sbjct: 530 RNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALD 589

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
            +R+M S G+ P  +   GVL +C+ + A  +G EV           + F+  ALI+MYA
Sbjct: 590 TFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYA 649

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG +++++ IFD +  K    W  II GYGIHGHG  A++LF+ M   G RPD   F+ 
Sbjct: 650 KCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLG 709

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VL AC+HAGL  +GL+Y   M+N YG++P  EHY C+VD+LGRAGQL EAL+L+  M  E
Sbjct: 710 VLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDE 769

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
           PD  +W +LL +C+ + ++E+ E    K+++LEP     YVLLSN+Y+     D + +VR
Sbjct: 770 PDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVR 829

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ----EHDGT 430
             M+E  L KD G S++E+ G V+ F+V D +  ++ +I +   KLE  +     + D +
Sbjct: 830 QRMKENGLHKDAGCSWIEIGGMVYRFLVSDGSLSESKKIQQTWIKLEKKISKIGYKPDTS 889

Query: 431 KRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIV 490
               +   E  +   + HSEKLAI+FG++NT+ GT + V KNLRIC DCH  IKLVSK+V
Sbjct: 890 CVLHELEEEGKIKILKSHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKVV 949

Query: 491 DRQFIVRDATRFHHFKSGFCSCKDYW 516
            R  IVRD  RFHHFK+G C+C D+W
Sbjct: 950 KRDIIVRDNKRFHHFKNGLCTCGDFW 975



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 154/335 (45%), Gaps = 7/335 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +N +I GY           L  +M RE+ V +N VT+L +LP C     L      H 
Sbjct: 366 VSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHG 425

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              + G   D  V N  +  Y KC S+D   ++F  +  K + +WNA+I  +AQNG    
Sbjct: 426 YAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGK 485

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L+L+  M   G+ PD  T   +L +CA L     G E+   +  NG   + F+  +L++
Sbjct: 486 SLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMS 545

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +Y +C ++   + IFD M  K++V W  +I G+  +     A+  F +ML  GI+P   A
Sbjct: 546 LYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIA 605

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
              VL ACS       G E  +    K  L         ++D+  + G + ++  + +  
Sbjct: 606 VTGVLGACSQVSALRLGKE-VHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDR- 663

Query: 312 LVEPDGAVWGALLGACKIH----KNVELAELAFGK 342
           + E D AVW  ++    IH    K +EL EL   K
Sbjct: 664 VNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNK 698



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 160/319 (50%), Gaps = 11/319 (3%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           YNAL+SGY  N+L  +A+SLF ++     +  ++ T+ C+   C     + LG   H + 
Sbjct: 162 YNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALA 221

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           +K G   D  VGN L+ MY KCG V+   K+F+ +  + L++WN+++   ++NG      
Sbjct: 222 LKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECC 281

Query: 134 ELYREM---KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
            +++ +   +  G+ PD  T V V+ +CA +G   +G+ V       G      +NN+L+
Sbjct: 282 GVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLV 341

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK-SGIRPDG 249
           +MY++CG L +ARA+FD    K VVSW  II GY   G      +L  EM +   +R + 
Sbjct: 342 DMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNE 401

Query: 250 TAFVSVLSACS--HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
              ++VL ACS  H  L+   L+  +G   ++G           V    +   L+ A  +
Sbjct: 402 VTVLNVLPACSGEHQLLS---LKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERV 458

Query: 308 IESMLVEPDGAVWGALLGA 326
              M  +   + W AL+GA
Sbjct: 459 FCGMEGKTVSS-WNALIGA 476



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 148/285 (51%), Gaps = 10/285 (3%)

Query: 4   ESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM---REQGVEINSVTMLCLLPICVDP 60
           E++++ +L V +N+++     N    E   +F ++    E+G+  +  TM+ ++P C   
Sbjct: 254 ETMRNRNL-VSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAV 312

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G + +GM  H +  K G+  + +V N L+ MY KCG +   R LFD    K +++WN +I
Sbjct: 313 GEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTII 372

Query: 121 SGYAQNGLATHVLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSV--GLEVEQQIQAN 177
            GY++ G    V EL +EM +   V  + VT + VL +C+  G H +    E+      +
Sbjct: 373 WGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACS--GEHQLLSLKEIHGYAFRH 430

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
           GF  +  + NA +  YA+C +L  A  +F GM  KTV SW A+IG +  +G    ++ LF
Sbjct: 431 GFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLF 490

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQ 282
             M+ SG+ PD     S+L AC+       G E  +G   + GL+
Sbjct: 491 LVMMDSGMDPDRFTIGSLLLACARLKFLRCGKE-IHGFMLRNGLE 534



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 123/250 (49%), Gaps = 11/250 (4%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140
           D  +   ++ MY  CGS    R +FD   EK L  +NA++SGY++N L    + L+ E+ 
Sbjct: 127 DVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELL 186

Query: 141 S-LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ-QIQANGFGSNPFLNNALINMYARCGN 198
           S   + PD  T   V  +CA +    +G  V    ++A GF S+ F+ NALI MY +CG 
Sbjct: 187 SATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGF-SDAFVGNALIAMYGKCGF 245

Query: 199 LKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS---GIRPDGTAFVSV 255
           ++ A  +F+ M  + +VSW +++     +G       +F  +L S   G+ PD    V+V
Sbjct: 246 VESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTV 305

Query: 256 LSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE----SM 311
           + AC+  G    G+   +G+  K G+         +VD+  + G L EA  L +      
Sbjct: 306 IPACAAVGEVRMGM-VVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKN 364

Query: 312 LVEPDGAVWG 321
           +V  +  +WG
Sbjct: 365 VVSWNTIIWG 374


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/510 (40%), Positives = 299/510 (58%), Gaps = 8/510 (1%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
            + + A+I G        +A+ LF +M+ +G      T   +L +C     L  G      
Sbjct: 599  MSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAY 658

Query: 73   CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             +  G +LD  VGN L++ Y K GS+   R++FD++P + +++WN +I+GYAQNGL    
Sbjct: 659  ILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTA 718

Query: 133  LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            +E   +M+   V P+  +FV +L++C+   A   G  V  +I       +  +  ALI+M
Sbjct: 719  VEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISM 778

Query: 193  YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
            YA+CG+  +A+ +FD +  K VV+W A+I  Y  HG    A+  F+ M K GI+PDG+ F
Sbjct: 779  YAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTF 838

Query: 253  VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
             S+LSAC+HAGL  +G + F  M+++YG+ P  EHY C+V LLGRA +  EA  LI  M 
Sbjct: 839  TSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMP 898

Query: 313  VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
              PD AVW  LLGAC+IH N+ LAE A    +KL   N   Y+LLSN+Y+ A   D + +
Sbjct: 899  FPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAK 958

Query: 373  VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
            +R +M  R ++K+PG S++E+   +H F+  DR+H +T EIY  L +L   V+  +    
Sbjct: 959  IRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLS--VEMEEAGYF 1016

Query: 433  SDQKNSEEHLNDTE------VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
             D ++    L           HSE+LAIA+G+I T PGT I + KNLRICGDCH   K +
Sbjct: 1017 PDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFI 1076

Query: 487  SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            SK+V R+ I RD+ RFH FK+G CSC+DYW
Sbjct: 1077 SKLVGREIIARDSNRFHSFKNGKCSCEDYW 1106



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 113/315 (35%), Positives = 172/315 (54%), Gaps = 2/315 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V YNALI+    +    EA   + +MR  GV +N  T L +L  C     L  G   H  
Sbjct: 296 VVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSH 355

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             + G   D  +GN L++MY +CG +   R+LF  +P++ LI+WNA+I+GYA+       
Sbjct: 356 ISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEA 415

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + LY++M+S GV P  VTF+ +LS+CA+  A++ G  + + I  +G  SN  L NAL+NM
Sbjct: 416 MRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNM 475

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y RCG+L +A+ +F+G   + V+SW ++I G+  HG  E A +LF EM    + PD   F
Sbjct: 476 YRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITF 535

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            SVLS C +    + G +  +G   + GLQ        ++++  R G L +A  +  S L
Sbjct: 536 ASVLSGCKNPEALELGKQ-IHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHS-L 593

Query: 313 VEPDGAVWGALLGAC 327
              D   W A++G C
Sbjct: 594 QHRDVMSWTAMIGGC 608



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 108/348 (31%), Positives = 181/348 (52%), Gaps = 4/348 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V YN ++  Y   + V E + LFG+M  +G+  + VT + LL     P  L  G   H +
Sbjct: 195 VSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKL 254

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            V+ GL+ D  VG  L+TM V+CG VD  ++ F    ++ ++ +NA+I+  AQ+G     
Sbjct: 255 TVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEA 314

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            E Y  M+S GV  +  T++ +L++C+   A   G  +   I  +G  S+  + NALI+M
Sbjct: 315 FEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISM 374

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YARCG+L KAR +F  MP++ ++SW AII GY        A++L+ +M   G++P    F
Sbjct: 375 YARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTF 434

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + +LSAC+++     G +  +    + G++        ++++  R G L EA  + E   
Sbjct: 435 LHLLSACANSSAYADG-KMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ 493

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVI--KLEPMNTGYYVLLS 358
              D   W +++     H + E A   F ++   +LEP N  +  +LS
Sbjct: 494 AR-DVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLS 540



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/375 (30%), Positives = 194/375 (51%), Gaps = 5/375 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +NA+I+GY       EA+ L+ +M+ +GV+   VT L LL  C +      G   H  
Sbjct: 397 ISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHED 456

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ G+  +  + N LM MY +CGS+   + +F+    + +I+WN+MI+G+AQ+G     
Sbjct: 457 ILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETA 516

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            +L++EM++  + PD +TF  VLS C +  A  +G ++  +I  +G   +  L NALINM
Sbjct: 517 YKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINM 576

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y RCG+L+ AR +F  +  + V+SWTA+IGG    G    A++LF +M   G RP  + F
Sbjct: 577 YIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTF 636

Query: 253 VSVLSACSHAGLTDKGLEYF-YGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            S+L  C+ +   D+G +   Y + + Y L  G  +   ++    ++G + +A E+ + M
Sbjct: 637 SSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGN--ALISAYSKSGSMTDAREVFDKM 694

Query: 312 LVEPDGAVWGALL-GACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
               D   W  ++ G  +        E A+    +    N   +V L N  S    L+  
Sbjct: 695 PSR-DIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEG 753

Query: 371 MRVRMMMRERRLKKD 385
            RV   + +R+L+ D
Sbjct: 754 KRVHAEIVKRKLQGD 768



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 164/328 (50%), Gaps = 3/328 (0%)

Query: 43  VEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGR 102
            E    T + LL  C     L      H   V+  +  D  + N L+ MYVKC SV    
Sbjct: 23  TETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAH 82

Query: 103 KLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162
           ++F ++P + +I+WN++IS YAQ G      +L+ EM++ G  P+ +T++ +L++C    
Sbjct: 83  QVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPA 142

Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIG 222
               G ++  QI   G+  +P + N+L++MY +CG+L +AR +F G+  + VVS+  ++G
Sbjct: 143 ELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLG 202

Query: 223 GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQ 282
            Y    + +  + LF +M   GI PD   ++++L A +   + D+G +  + +  + GL 
Sbjct: 203 LYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEG-KRIHKLTVEEGLN 261

Query: 283 PGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH-KNVELAELAFG 341
                 T +V +  R G ++ A +  +    + D  V+ AL+ A   H  NVE  E  + 
Sbjct: 262 SDIRVGTALVTMCVRCGDVDSAKQAFKGT-ADRDVVVYNALIAALAQHGHNVEAFEQYYR 320

Query: 342 KVIKLEPMNTGYYVLLSNIYSEARNLDG 369
                  +N   Y+ + N  S ++ L+ 
Sbjct: 321 MRSDGVALNRTTYLSILNACSTSKALEA 348



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 149/313 (47%), Gaps = 2/313 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N+LIS Y       +A  LF +M+  G   N +T + +L  C  P  L  G   H  
Sbjct: 94  ISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQ 153

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G   D  V N L++MY KCG +   R++F  +  + ++++N M+  YAQ       
Sbjct: 154 IIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKEC 213

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+ +M S G+ PD VT++ +L +         G  + +     G  S+  +  AL+ M
Sbjct: 214 LGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTM 273

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
             RCG++  A+  F G   + VV + A+I     HGH   A + +  M   G+  + T +
Sbjct: 274 CVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTY 333

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +S+L+ACS +   + G +  +   ++ G     +    ++ +  R G L +A EL  +M 
Sbjct: 334 LSILNACSTSKALEAG-KLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTM- 391

Query: 313 VEPDGAVWGALLG 325
            + D   W A++ 
Sbjct: 392 PKRDLISWNAIIA 404


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/509 (40%), Positives = 307/509 (60%), Gaps = 5/509 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +I+ YV N    EAV LFG++++ GV+ N +T + +L +      L  G   H +
Sbjct: 273 VTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHEL 332

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             + G D D  V   LM++Y +C +     K+F  +  K +ITW  M   YAQNG     
Sbjct: 333 VKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEA 392

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+L++EM+  G  P + T V VL +CAHL A   G ++   I  N F     +  ALINM
Sbjct: 393 LQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETALINM 452

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CG + +A ++F+ M ++ ++ W +++G Y  HG+ +  +QLF++M   G++ D  +F
Sbjct: 453 YGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSF 512

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           VSVLSA SH+G    G +YF  M   + + P PE Y C+VDLLGRAG++ EA++++  + 
Sbjct: 513 VSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLS 572

Query: 313 -VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
              PDG +W  LLGAC+ H   + A+ A  +V++ +P ++G YV+LSN+Y+ A + DG+ 
Sbjct: 573 GCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVN 632

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH---D 428
           R+R +MR R +KK+PG S +E+  RVH F+ GDR+H +   IY  LD L + ++      
Sbjct: 633 RMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGYIP 692

Query: 429 GTKRSDQKNSEEHLNDTEV-HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
            TK       +E   D    HSE+LAIAFG+I+T PGT + V+KNLR+C DCH   K +S
Sbjct: 693 DTKMILHDVEDERKEDMLFYHSERLAIAFGLISTPPGTPLRVIKNLRVCSDCHTATKYIS 752

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K+  R+ +VRD  RFH+FK G CSCKDYW
Sbjct: 753 KLRGREILVRDTHRFHNFKDGRCSCKDYW 781



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 165/319 (51%), Gaps = 4/319 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+I+  V +   + A  L+ +M+  GV  N +T+  +     DP YL  G   + +
Sbjct: 172 VSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGL 231

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
                ++ D  V N  + M+   G +   R+LF+ + ++ ++TWN +I+ Y QN      
Sbjct: 232 VSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEA 291

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + L+  ++  GV  + +TFV +L+    L + + G  + + ++  G+  +  +  AL+++
Sbjct: 292 VRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSL 351

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y RC    +A  IF  M  K V++WT +   Y  +G  + A+QLF EM   G RP     
Sbjct: 352 YGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATL 411

Query: 253 VSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           V+VL  C+H     KG + + + ++N++ ++   E  T ++++ G+ G++ EA+ + E M
Sbjct: 412 VAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVE--TALINMYGKCGKMAEAMSVFEKM 469

Query: 312 LVEPDGAVWGALLGACKIH 330
             + D  VW ++LGA   H
Sbjct: 470 -AKRDILVWNSMLGAYAQH 487



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 152/323 (47%), Gaps = 3/323 (0%)

Query: 46  NSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLF 105
           ++   + LL  C     +  G   H      G + +  V   L+ MY +CGSV   +++F
Sbjct: 3   DTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVF 62

Query: 106 DQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHS 165
           + +  K +  W  MI  Y Q G     L ++ +M+   V P  VT+V +L++CA   +  
Sbjct: 63  EILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLK 122

Query: 166 VGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYG 225
            G+E+  QI   GF  + F+  ALINMY +CG+++ A   F  +  + VVSWTA+I    
Sbjct: 123 DGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACV 182

Query: 226 IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
            H    +A  L+  M   G+ P+     +V +A        +G ++ YG+ +   ++   
Sbjct: 183 QHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEG-KFVYGLVSSGVMESDV 241

Query: 286 EHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345
                 V++ G AG L +A  L E M V+ D   W  ++     ++N   A   FG++ +
Sbjct: 242 RVMNSAVNMFGNAGLLGDARRLFEDM-VDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQ 300

Query: 346 LE-PMNTGYYVLLSNIYSEARNL 367
                N   +VL+ N+Y+   +L
Sbjct: 301 DGVKANDITFVLMLNVYTSLTSL 323



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 135/298 (45%), Gaps = 1/298 (0%)

Query: 14  CYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
            +  +I  Y        A+ +F +M+E+ V    VT + +L  C     L  GM  H   
Sbjct: 72  AWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQI 131

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           ++ G + D  VG  L+ MY KCGSV      F ++  + +++W AMI+   Q+       
Sbjct: 132 LQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALAR 191

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
            LYR M+  GV P+ +T   V ++       S G  V   + +    S+  + N+ +NM+
Sbjct: 192 WLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVRVMNSAVNMF 251

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
              G L  AR +F+ M  + VV+W  +I  Y  + +   AV+LF  + + G++ +   FV
Sbjct: 252 GNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFV 311

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            +L+  +      KG +  + +  + G        T ++ L GR     +A ++   M
Sbjct: 312 LMLNVYTSLTSLAKG-KVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDM 368



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 96/198 (48%), Gaps = 2/198 (1%)

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           PD   FV +L  C+       G  V   ++  GF  N  +   LI MYA+CG++ +A+ +
Sbjct: 2   PDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQV 61

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           F+ + RK V +WT +IG Y   G  + A+ +F +M +  + P    +V++L+AC+     
Sbjct: 62  FEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESL 121

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
             G+E  +G   + G +      T ++++  + G +  A +  +  L   D   W A++ 
Sbjct: 122 KDGME-IHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKR-LEHRDVVSWTAMIA 179

Query: 326 ACKIHKNVELAELAFGKV 343
           AC  H    LA   + ++
Sbjct: 180 ACVQHDQFALARWLYRRM 197


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/550 (39%), Positives = 316/550 (57%), Gaps = 48/550 (8%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N ++SGY       +A+++F KM  +GV+ NS+T+   +  C +   L  G   H  C+
Sbjct: 180 WNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCI 239

Query: 75  KFG-LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM-------------- 119
           K   LD D  VGN L+  Y KC SV+  R+ F  + +  L++WNAM              
Sbjct: 240 KVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKA 299

Query: 120 -----------------------------ISGYAQNGLATHVLELYREMKSLGVCPDAVT 150
                                        IS  AQ+G + + L+L REM    V  + VT
Sbjct: 300 ALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVT 359

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
            V  L +C+ L A   G E+ Q I   G  +  F+ N+LI+MY RCG+++K+R IFD MP
Sbjct: 360 MVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMP 419

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270
           ++ +VSW  +I  YG+HG G  AV LF +    G++P+   F ++LSACSH+GL ++G +
Sbjct: 420 QRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWK 479

Query: 271 YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           YF  MK +Y + P  E Y CMVDLL RAGQ NE LE IE M  EP+ AVWG+LLGAC+IH
Sbjct: 480 YFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIH 539

Query: 331 KNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSY 390
            N +LAE A   + +LEP ++G YVL++NIYS A   +   ++R +M+ER + K PG S+
Sbjct: 540 CNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSW 599

Query: 391 VELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEV--- 447
           +E+K ++H F+VGD +H    +I   ++ L   ++E      ++    +   ++ E    
Sbjct: 600 IEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLC 659

Query: 448 -HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFK 506
            HSEK+A+AFG+I+T+ GT + ++KNLR+CGDCH   K +SK+  R  I+RD  RFHHF 
Sbjct: 660 GHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFV 719

Query: 507 SGFCSCKDYW 516
            G CSC DYW
Sbjct: 720 DGVCSCGDYW 729



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 120/229 (52%), Gaps = 4/229 (1%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           ST   V +N++IS    +     A+ L  +M    VE+N+VTM+  LP C     L  G 
Sbjct: 318 STRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGK 377

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
             H   ++ GLD    + N L+ MY +CGS+   R++FD +P++ L++WN MIS Y  +G
Sbjct: 378 EIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHG 437

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
                + L+++ +++G+ P+ +TF  +LS+C+H G    G +  + ++   +  +P +  
Sbjct: 438 FGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTE-YAMDPAVEQ 496

Query: 188 --ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVA 233
              ++++ +R G   +     + MP       W +++G   IH + ++A
Sbjct: 497 YACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLA 545



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 113/218 (51%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           +L  C     L LG   H   V  G+D+   +G+ L+ +Y + G V+  R++FD++ E+ 
Sbjct: 16  ILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERN 75

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
           + +W A++  Y   G     ++L+  M + GV PD   F  V  +C+ L  + VG +V  
Sbjct: 76  VFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYD 135

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
            + + GF  N  +  ++++M+ +CG +  AR  F+ +  K V  W  ++ GY   G  + 
Sbjct: 136 YMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKK 195

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270
           A+ +F +M+  G++P+     S +SAC++  L   G E
Sbjct: 196 ALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGRE 233



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 123/255 (48%), Gaps = 9/255 (3%)

Query: 30  EAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLM 89
           E + LF  M  +GV  +      +   C +     +G   +   +  G + +  V   ++
Sbjct: 94  ETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSIL 153

Query: 90  TMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
            M++KCG +D  R+ F+++  K +  WN M+SGY   G     L ++R+M   GV P+++
Sbjct: 154 DMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSI 213

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQ-IQANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208
           T    +S+C +L     G E+    I+     S+  + N+L++ YA+C +++ AR  F  
Sbjct: 214 TIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGM 273

Query: 209 MPRKTVVSWTAIIG--GYGIHGHGEVAVQLFDEM------LKSGIRPDGTAFVSVLSACS 260
           + +  +VSW A++   G+  +G G+ A++ F  M             D   + S++SAC+
Sbjct: 274 IKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACA 333

Query: 261 HAGLTDKGLEYFYGM 275
            +G +   L+    M
Sbjct: 334 QSGRSVNALDLLREM 348



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
           +  +L  C  L    +G +V  Q+  NG     FL + L+ +Y + G ++ AR +FD M 
Sbjct: 13  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 72

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270
            + V SWTAI+  Y   G  E  ++LF  M+  G+RPD   F  V  ACS       G +
Sbjct: 73  ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 132

Query: 271 YFYGMKNKYGLQPGPEHYTC----MVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
            +      Y L  G E  +C    ++D+  + G+++ A    E +  + D  +W  ++ 
Sbjct: 133 VY-----DYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK-DVFMWNIMVS 185


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/558 (39%), Positives = 305/558 (54%), Gaps = 46/558 (8%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSL-----VSEAVSLFGKMREQGVEINSVTMLCLLP 55
           +FD   K     + ++A+I+GY  +       + E   L  +MR +GV  N VT + +L 
Sbjct: 315 IFDRMSKRD--VISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILR 372

Query: 56  ICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSV----------------- 98
            C   G L  G   H    K G +LD S+   +  MY KCGS+                 
Sbjct: 373 ACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVA 432

Query: 99  --------------DYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGV 144
                             K+F ++P + +++WN MI+GYAQNG    V EL   MK+ G 
Sbjct: 433 WTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGF 492

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARA 204
            PD VT + +L +C  L     G  V  +    G  S+  +  +LI MY++CG + +AR 
Sbjct: 493 QPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEART 552

Query: 205 IFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL 264
           +FD M  +  V+W A++ GYG HG G  AV LF  MLK  + P+     +V+SACS AGL
Sbjct: 553 VFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGL 612

Query: 265 TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
             +G E F  M+  + + P  +HY CMVDLLGRAG+L EA E I+SM  EPD +VW ALL
Sbjct: 613 VQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALL 672

Query: 325 GACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKK 384
           GACK H NV+LAE A   +++LEP     Y+ LSNIY++A   D   +VR +M +R LKK
Sbjct: 673 GACKSHNNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKK 732

Query: 385 DPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLND 444
           D G S +E+ GR+H F+  D  H +   I+  L+ L   ++E   T   D +     ++D
Sbjct: 733 DRGESSIEIDGRIHTFVAEDCAHPEIDAIHAELETLTKEMKEAGYT--PDMRFVLHDVDD 790

Query: 445 TEV------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRD 498
            +       HSEKLAIA+G++ T  GT I +MKNLR+CGDCH   K +SKI  R+ + RD
Sbjct: 791 VQKEKALCHHSEKLAIAYGLLKTPSGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARD 850

Query: 499 ATRFHHFKSGFCSCKDYW 516
           A RFH+F +G CSC D+W
Sbjct: 851 ANRFHYFNNGTCSCGDFW 868



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/383 (27%), Positives = 192/383 (50%), Gaps = 21/383 (5%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++++I+ Y  N+  ++A   F +M +  +E N +T L +L  C +   L  G   H I
Sbjct: 123 VTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTI 182

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               G++ D +V   L+TMY KCG +    ++F ++ E+ +++W A+I   AQ+      
Sbjct: 183 VKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEA 242

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            ELY +M   G+ P+AVTFV +L+SC    A + G  +   I   G  ++  + NALI M
Sbjct: 243 FELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITM 302

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV-----AVQLFDEMLKSGIRP 247
           Y +C ++++AR IFD M ++ V+SW+A+I GY   G+ +        QL + M + G+ P
Sbjct: 303 YCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFP 362

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           +   F+S+L AC+  G  ++G +  +   +K G +      T + ++  + G + EA E 
Sbjct: 363 NKVTFMSILRACTAHGALEQGRQ-IHAELSKVGFELDRSLQTAIFNMYAKCGSIYEA-EQ 420

Query: 308 IESMLVEPDGAVWGALLG---ACKIHKNVE--LAELAFGKVIKLEPMNTGY--------- 353
           + S +   +   W + L     C    + E   +E+    V+    M  GY         
Sbjct: 421 VFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKV 480

Query: 354 YVLLSNIYSEARNLDGIMRVRMM 376
           + LLS++ +E    D +  + ++
Sbjct: 481 FELLSSMKAEGFQPDRVTVITIL 503



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 164/349 (46%), Gaps = 38/349 (10%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+I     +  ++EA  L+ +M + G+  N+VT + LL  C  P  L  G   H  
Sbjct: 224 VSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSH 283

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT-- 130
             + GL+ D  V N L+TMY KC SV   R++FD++ ++ +I+W+AMI+GYAQ+G     
Sbjct: 284 ISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKE 343

Query: 131 ---HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
               V +L   M+  GV P+ VTF+ +L +C   GA   G ++  ++   GF  +  L  
Sbjct: 344 SIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQT 403

Query: 188 ALINMYARCG-------------------------------NLKKARAIFDGMPRKTVVS 216
           A+ NMYA+CG                               +L  A  +F  MP + VVS
Sbjct: 404 AIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVS 463

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
           W  +I GY  +G      +L   M   G +PD    +++L AC      ++G +  +   
Sbjct: 464 WNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERG-KLVHAEA 522

Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
            K GL+      T ++ +  + GQ+ EA  + + M    D   W A+L 
Sbjct: 523 VKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKM-SNRDTVAWNAMLA 570



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 151/296 (51%), Gaps = 2/296 (0%)

Query: 30  EAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLM 89
           EA+ L G ++++G+ +NS T  C++  C        G   H    + G+++D  +GN L+
Sbjct: 39  EAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLI 98

Query: 90  TMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
             Y K   V    ++F ++  + ++TW++MI+ YA N       + +  M    + P+ +
Sbjct: 99  NFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRI 158

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
           TF+ +L +C +      G ++   ++A G  ++  +  ALI MY++CG +  A  +F  M
Sbjct: 159 TFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKM 218

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
             + VVSWTAII     H     A +L+++ML++GI P+   FVS+L++C+     ++G 
Sbjct: 219 TERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRG- 277

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
              +   ++ GL+        ++ +  +   + EA E+ + M  + D   W A++ 
Sbjct: 278 RRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRM-SKRDVISWSAMIA 332



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 125/261 (47%), Gaps = 5/261 (1%)

Query: 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
           G     ++L   +K  G+  ++ T+  V+  CA       G  V +Q+   G   + +L 
Sbjct: 35  GRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLG 94

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           N+LIN Y++  ++  A  +F  M  + VV+W+++I  Y  + H   A   F+ M  + I 
Sbjct: 95  NSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIE 154

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           P+   F+S+L AC++  + +KG +  + +    G++      T ++ +  + G+++ A E
Sbjct: 155 PNRITFLSILKACNNYSILEKGRK-IHTIVKAMGMETDVAVATALITMYSKCGEISVACE 213

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEA 364
           +   M  E +   W A++ A   H+ +  A   + ++++  + P N   +V L N  +  
Sbjct: 214 VFHKM-TERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISP-NAVTFVSLLNSCNTP 271

Query: 365 RNLDGIMRVRMMMRERRLKKD 385
             L+   R+   + ER L+ D
Sbjct: 272 EALNRGRRIHSHISERGLETD 292


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/512 (40%), Positives = 314/512 (61%), Gaps = 11/512 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + ++ISGY+ N   +EA+ L+ KM E G   + VTM  L+  C +   L +GM  H  
Sbjct: 146 VVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSH 205

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             +  + +   +G+ L+ MY KCG +   R++FDQ+ +K +  W+A+I GY +N  +T  
Sbjct: 206 IREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEA 265

Query: 133 LELYREMKS-LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
           L+L+RE+     + P+ VT + V+S+CA LG    G  V   I     G +  LNN+LI+
Sbjct: 266 LQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLID 325

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           M+++CG++  A+ IFD M  K ++SW +++ G  +HG G  A+  F  M  + ++PD   
Sbjct: 326 MFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEIT 385

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+ VL+ACSHAGL  +G + FY ++  YG++   EHY CMVDLL RAG L EA E I  M
Sbjct: 386 FIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVM 445

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            ++PDGA+WG++LGAC+++ N+EL E A   +++LEP N G Y+LLSNIY+  +  + + 
Sbjct: 446 PLQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYARRKMWNEVK 505

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML----DKLENLVQEH 427
           +VR +M E+ ++K PG S V +    H F+ GD +H +  EI  ML    +KL+ +    
Sbjct: 506 KVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLVGYVA 565

Query: 428 DGTK---RSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
           D ++     D    EE ++    HSEKLA+ +G++ +  G  IV++KNLR+C DCH  IK
Sbjct: 566 DTSEVLLNIDDNKKEESVSQ---HSEKLALCYGLLKSEIGGRIVILKNLRVCSDCHTLIK 622

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           LVSKI  RQ  +RD  RFHHFK G CSC+DYW
Sbjct: 623 LVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 171/343 (49%), Gaps = 12/343 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEI-NSVTMLCLLPICVDPGYLWLGMCCHC 71
           + +N+++  +V +++   A+  + +M E+   + +  T   LL  C       +G   H 
Sbjct: 44  LTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHG 103

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             VK+ L  D  +   L+ MY  CG +   R LF+++  +  + W +MISGY +N     
Sbjct: 104 QVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNE 163

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L LY++M+  G  PD VT   ++S+CA L    VG+++   I+         L +AL+N
Sbjct: 164 ALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVN 223

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML-KSGIRPDGT 250
           MYA+CG+LK AR +FD +  K V +W+A+I GY  +     A+QLF E+   S +RP+  
Sbjct: 224 MYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEV 283

Query: 251 AFVSVLSACSHAGLTDKGL---EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
             ++V+SAC+  G  + G    +Y    +  + +         ++D+  + G ++ A  +
Sbjct: 284 TILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLN----NSLIDMFSKCGDIDAAKRI 339

Query: 308 IESMLVEPDGAVWGALLGACKIH--KNVELAELAFGKVIKLEP 348
            +SM  + D   W +++    +H      LA+    +   L+P
Sbjct: 340 FDSMSYK-DLISWNSMVNGLALHGLGREALAQFHLMQTTDLQP 381



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 128/263 (48%), Gaps = 18/263 (6%)

Query: 86  NCLMTMYVKCGS--VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM--KS 141
           N L+   +  GS  V Y   +F       ++TWN+M+  +  + +    L+ Y EM  +S
Sbjct: 14  NKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERS 73

Query: 142 LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKK 201
             V PD  TF  +L  CA L    VG  +  Q+      S+ ++   L+NMYA CG+LK 
Sbjct: 74  RNV-PDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKS 132

Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261
           AR +F+ M  +  V WT++I GY  +     A+ L+ +M + G  PD     +++SAC  
Sbjct: 133 ARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSAC-- 190

Query: 262 AGLTDKGLEYFYGMK-----NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPD 316
           A L D G+    GMK      +  ++      + +V++  + G L  A ++ +  L + D
Sbjct: 191 AELKDLGV----GMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQ-LSDKD 245

Query: 317 GAVWGALL-GACKIHKNVELAEL 338
              W AL+ G  K +++ E  +L
Sbjct: 246 VYAWSALIFGYVKNNRSTEALQL 268


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/541 (39%), Positives = 319/541 (58%), Gaps = 39/541 (7%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           YNALI GY++   + E+   +  MR++GV   S T   L   C     + LG   H   +
Sbjct: 114 YNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQIHGQTI 173

Query: 75  KFG-LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE----------------------- 110
             G    D  VGN ++ MY+KCG ++ GRK+FD++P                        
Sbjct: 174 LVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAG 233

Query: 111 --------KGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162
                   K ++ W  M+SG+AQN      +  + +M+  GV  D +T +GV+S+CA LG
Sbjct: 234 ELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLG 293

Query: 163 AHSVGLEVEQQIQANGFGS--NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           A      +    + + FG   +  + +ALI+MY++CG++  A  +F GM  + V S++++
Sbjct: 294 AAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSM 353

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           I G+ +HG    A++LFDEM+K+ I+P+   F+ VL+ACSHAG+ ++G + F  M+  YG
Sbjct: 354 ILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYG 413

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           ++P  +HYTCMVDLLGRAG+L EA EL+++M +EP G VWGALLGAC+IHK+ ++A +A 
Sbjct: 414 IKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIAA 473

Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVEL-KGRVHL 399
             + +LEP   G Y+LL+NIY+     + +  VR +MR R L+K+P +S++E  KG VH 
Sbjct: 474 NHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKGMVHE 533

Query: 400 FMVGDRNHHQTVEIYR----MLDKLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIA 455
           F  GD  H ++ EI +    +LD+LE    +   +  S   N E+       HSEKLA+A
Sbjct: 534 FFSGDMTHPRSGEIKQALEDLLDRLEAKGYQPHLSSVSYDVNDEDKRRILMTHSEKLALA 593

Query: 456 FGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDY 515
           FG+I+T PG++I ++KNLRIC DCH  I   S+I  R+ IVRD  RFHHF  G CSC ++
Sbjct: 594 FGLISTIPGSKIRIVKNLRICEDCHSVICGASQITGREIIVRDIMRFHHFHDGICSCGNF 653

Query: 516 W 516
           W
Sbjct: 654 W 654



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  ++SG+  N+   EA+  F KM+E GVE + +T++ ++  C   G          +
Sbjct: 245 VAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADWIRDV 304

Query: 73  CVK--FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
             K  FG      VG+ L+ MY KCGSV    ++F  + E+ + ++++MI G+A +G   
Sbjct: 305 AEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVH 364

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--A 188
             ++L+ EM    + P+ VTF+GVL++C+H G    G ++ + ++   +G  P  ++   
Sbjct: 365 DAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELME-KCYGIKPSADHYTC 423

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVA 233
           ++++  R G L++A  +   MP +     W A++G   IH   ++A
Sbjct: 424 MVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIA 469



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 125/282 (44%), Gaps = 36/282 (12%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           Y   +F+QV       +NA+I GY          E Y  M+  GV P + TF  +  +C 
Sbjct: 98  YPLSIFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACG 157

Query: 160 HLGAHSVGLEVE-QQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWT 218
                 +G ++  Q I   GFG +  + N++I+MY +CG L+  R +FD MP + V+SWT
Sbjct: 158 AKMDVGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWT 217

Query: 219 AIIGGYGIHGHGEVAVQLFD-------------------------------EMLKSGIRP 247
            +I  Y   G+ E A +LFD                               +M + G+  
Sbjct: 218 ELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVET 277

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGM--KNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
           D    + V+SAC+  G   K  ++   +  K+++G +      + ++D+  + G + +A 
Sbjct: 278 DEITLIGVISACAQLGAA-KYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAY 336

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE 347
            + + M  E +   + +++    +H  V  A   F +++K E
Sbjct: 337 RVFQGM-KERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTE 377


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/508 (39%), Positives = 308/508 (60%), Gaps = 5/508 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+I+ Y    L  +   LF +M  +G   +   +   L        L  G   H  
Sbjct: 364 VSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGY 423

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ G++   +V N LM MYVKCG+++  + +FD V  K +I+WN +I GY++N LA   
Sbjct: 424 AIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEA 483

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
             L+ EM  L + P+AVT   +L + A L +   G E+       G+  + F+ NALI+M
Sbjct: 484 FSLFTEML-LQLRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDM 542

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CG L  AR +FD +  K ++SWT ++ GYG+HG G  A+ LF++M  SGI PD  +F
Sbjct: 543 YVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASF 602

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            ++L ACSH+GL D+G  +F  M+ ++ ++P  +HYTCMVDLL   G L EA E I+SM 
Sbjct: 603 SAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMP 662

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           +EPD ++W +LL  C+IH+NV+LAE    +V +LEP NTGYYVLL+NIY+EA   + + +
Sbjct: 663 IEPDSSIWVSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAEAERWEAVRK 722

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE--HDGT 430
           ++  +  R L+++ G S++E KG+VH+F+  +RNH Q   I   L+++   +QE  HD  
Sbjct: 723 LKNKIGGRGLRENTGCSWIEAKGKVHVFIADNRNHPQGTRIAEFLNEVAKRMQEEGHDPK 782

Query: 431 KRSDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
           K+     ++  ++   +  HS KLA+AFG++N S G  I V KN R+C  CH   K +SK
Sbjct: 783 KKYALMGADNAVHGEALCGHSSKLAVAFGVLNLSEGRLIRVTKNSRVCSHCHEAAKFISK 842

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +  R+ I+RD+ RFHHF+ G CSC+ YW
Sbjct: 843 MCSREIILRDSNRFHHFEQGRCSCRGYW 870



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 160/348 (45%), Gaps = 34/348 (9%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N++ISG   N L  +A+ LF +M  +G E++S T+L +LP C +   L+LG   H  
Sbjct: 263 ISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGY 322

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK G     S+ N L+ MY  C       K+F  + +K +++W AMI+ Y + GL   V
Sbjct: 323 SVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKV 382

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
             L++EM   G  PD       L + A       G  V      NG      + NAL+ M
Sbjct: 383 AGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEM 442

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CGN+++A+ IFDG+  K ++SW  +IGGY  +     A  LF EML   +RP+    
Sbjct: 443 YVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ-LRPNAVTM 501

Query: 253 VSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEH------------------------ 287
             +L A +     ++G E + Y ++  Y       +                        
Sbjct: 502 TCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSN 561

Query: 288 -----YTCMVDLLGRAGQLNEALELIESMLVE---PDGAVWGALLGAC 327
                +T MV   G  G+  +A+ L E M V    PD A + A+L AC
Sbjct: 562 KNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYAC 609



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 118/376 (31%), Positives = 173/376 (46%), Gaps = 6/376 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  + + + V + AL+SGY     + E V LF KM   GV  ++ T+ C+L      
Sbjct: 151 VFDEMPQVSDVRV-WTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGL 209

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G +  G   H +  K G     +VGN LM  Y K         +FD +P + +I+WN+MI
Sbjct: 210 GSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMI 269

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SG   NGL    +EL+  M   G   D+ T + VL +CA L    +G  V       GF 
Sbjct: 270 SGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFI 329

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S   L N L++MY+ C + +    IF  M +K VVSWTA+I  Y   G  +    LF EM
Sbjct: 330 SQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEM 389

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
              G RPD  A  S L A +   L   G +  +G   + G++        ++++  + G 
Sbjct: 390 GLEGTRPDIFAITSALHAFAGNELLKHG-KSVHGYAIRNGMEKVLAVTNALMEMYVKCGN 448

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           + EA +LI   +V  D   W  L+G    +    LA  AF    ++        V ++ I
Sbjct: 449 MEEA-KLIFDGVVSKDMISWNTLIGG---YSRNNLANEAFSLFTEMLLQLRPNAVTMTCI 504

Query: 361 YSEARNLDGIMRVRMM 376
              A +L  + R R M
Sbjct: 505 LPAAASLSSLERGREM 520



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 145/301 (48%), Gaps = 11/301 (3%)

Query: 28  VSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI--CVKFGLD-LDFSV 84
           + EA+ L G     GV+  S     +L +C +   L  G   H +      G D +D  +
Sbjct: 77  LEEALGLLGS---DGVDDRSYG--AVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVL 131

Query: 85  GNCLMTMYVKCGSVDYGRKLFDQVPE-KGLITWNAMISGYAQNGLATHVLELYREMKSLG 143
           G  L+ MY+KCG ++  R++FD++P+   +  W A++SGYA+ G     + L+R+M   G
Sbjct: 132 GQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCG 191

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
           V PDA T   VL   A LG+   G  V   ++  GFGS   + NAL+  YA+    K A 
Sbjct: 192 VRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAI 251

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG 263
            +FDGMP + V+SW ++I G   +G  + A++LF  M   G   D    +SVL AC+   
Sbjct: 252 LVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELH 311

Query: 264 LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGAL 323
           L   G    +G   K G          ++D+           ++  +M V+ +   W A+
Sbjct: 312 LLFLG-RVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNM-VQKNVVSWTAM 369

Query: 324 L 324
           +
Sbjct: 370 I 370



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 6/185 (3%)

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF---LNNALINMYARCGNLKKAR 203
           D  ++  VL  C+ + +   G      ++A+  G +     L   L+ MY +CG+L+ AR
Sbjct: 90  DDRSYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENAR 149

Query: 204 AIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262
            +FD MP+ + V  WTA++ GY   G     V LF +M   G+RPD      VL   +  
Sbjct: 150 RVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGL 209

Query: 263 GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGA 322
           G  + G E  +G+  K G          ++    ++ +  +A+ + + M    D   W +
Sbjct: 210 GSIEDG-EVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGM-PHRDVISWNS 267

Query: 323 LLGAC 327
           ++  C
Sbjct: 268 MISGC 272


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/434 (44%), Positives = 274/434 (63%), Gaps = 4/434 (0%)

Query: 87  CLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCP 146
            ++T Y K G +D  R LFD + E+  + WN MI GY QNG+    L L+R M      P
Sbjct: 129 AMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKP 188

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF 206
           + VT + VLS+C  LGA   G  V   I+ NG   N  +  AL++MY++CG+L+ AR +F
Sbjct: 189 NEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVF 248

Query: 207 DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD 266
           D +  K VV+W ++I GY +HG  + A+QLF  M + G+ P    F+ +LSAC H+G   
Sbjct: 249 DKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVT 308

Query: 267 KGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
           +G + F  MK++YG++P  EHY CMV+LLGRAG + +A EL+++M +EPD  +WG LLGA
Sbjct: 309 EGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGA 368

Query: 327 CKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDP 386
           C++H  + L E     ++     N+G Y+LLSNIY+   N DG+ R+R MM++  +KK+P
Sbjct: 369 CRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEP 428

Query: 387 GYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD----QKNSEEHL 442
           G S +E+  +VH F+ G  NH +  EIY ML+++   ++ H  T ++D         E  
Sbjct: 429 GCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKE 488

Query: 443 NDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRF 502
              EVHSEKLAIAFG+INT PGT I ++KNLR+C DCH   KL+SKI  R+ +VRD  RF
Sbjct: 489 RSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRF 548

Query: 503 HHFKSGFCSCKDYW 516
           HHF +G CSC DYW
Sbjct: 549 HHFVNGSCSCGDYW 562



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 133/241 (55%), Gaps = 4/241 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           VC+N +I GY  N + +EA+ LF +M +   + N VT+L +L  C   G L  G   H  
Sbjct: 156 VCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSY 215

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               G+  +  VG  L+ MY KCGS++  R +FD++ +K ++ WN+MI GYA +G +   
Sbjct: 216 IENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEA 275

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           L+L++ M  +G+ P  +TF+G+LS+C H G  + G ++  +++ + +G  P + +   ++
Sbjct: 276 LQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMK-DEYGIEPKIEHYGCMV 334

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           N+  R G++++A  +   M      V W  ++G   +HG   +  ++ + ++   +   G
Sbjct: 335 NLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSG 394

Query: 250 T 250
           T
Sbjct: 395 T 395



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 12/163 (7%)

Query: 168 LEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH 227
           L++   +  +G   +P LN  L   YA  G L  + A+F      +V  WTAII G+ + 
Sbjct: 47  LQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALR 106

Query: 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH 287
           G    A QLFD M +  +     +  ++L+  +  G  D     F GM+ + G+      
Sbjct: 107 GDVVSAQQLFDTMPEKSL----VSLTAMLTCYAKHGELDAARVLFDGMEERDGVC----- 157

Query: 288 YTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGAC 327
           +  M+D   + G  NEAL L   ML    +P+     ++L AC
Sbjct: 158 WNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSAC 200


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/520 (42%), Positives = 313/520 (60%), Gaps = 16/520 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++A+I+GY    L  EA+ +F +M   G E N VT++ LL  C   G L  G   HC 
Sbjct: 352 VTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCH 411

Query: 73  CVKFGLDLD-------FSVGNCLMTMYVKCGSVDYGRKLFDQVPEK--GLITWNAMISGY 123
            +K+ L+LD         V N L+ MY KC S    R +FD +P K   ++TW  +I G 
Sbjct: 412 AIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGN 471

Query: 124 AQNGLATHVLELYREMKSLG--VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGS 181
           AQ+G A   LEL+ +M      V P+A T    L +CA LGA   G ++   +  N F S
Sbjct: 472 AQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFES 531

Query: 182 NP-FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
              F+ N LI+MY++ G++  AR +FD M ++  VSWT+++ GYG+HG GE A+Q+F EM
Sbjct: 532 AMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEM 591

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            K  + PDG  FV VL ACSH+G+ D+G+ YF GM   +G+ PG EHY CMVDLL RAG+
Sbjct: 592 QKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGR 651

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L+EA+ELI  M ++P  AVW ALL AC+++ NVEL E A  ++++LE  N G Y LLSNI
Sbjct: 652 LDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNI 711

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+ AR    + R+R +M+   +KK PG S+V+ +     F  GD +H  + +IY +L  L
Sbjct: 712 YANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDL 771

Query: 421 ENLVQE----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
              ++      D        + EE  +    HSEKLA+A+GI+ T+PG  I + KNLR C
Sbjct: 772 MQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRAC 831

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           GDCH     +S I++ + IVRD++RFHHFK+G CSC+ YW
Sbjct: 832 GDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 871



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 122/459 (26%), Positives = 201/459 (43%), Gaps = 87/459 (18%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           S+H    +N LI   V    + + + L+ +M+  G   +  T   +L  C +      G 
Sbjct: 106 SSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGA 165

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG---LITWNAMISGYA 124
             H +    G + +  VGN L++MY +CG+ +  R++FD++ E+G   L++WN++++ Y 
Sbjct: 166 SVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYM 225

Query: 125 QNGLATHVLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP 183
           Q G +   ++++  M + LG+ PDAV+ V VL +CA +GA S G +V      +G   + 
Sbjct: 226 QGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDV 285

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVS--------------------------- 216
           F+ NA+++MYA+CG +++A  +F+ M  K VVS                           
Sbjct: 286 FVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREE 345

Query: 217 --------WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL---- 264
                   W+A+I GY   G G  A+ +F +ML  G  P+    VS+LS C+ AG     
Sbjct: 346 KIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHG 405

Query: 265 ----------------TDKG--LEYFYGMKNKYGLQPGPEHYTCMVDLL----------- 295
                            D G  L     + + Y     P+    M DL+           
Sbjct: 406 KETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWT 465

Query: 296 ------GRAGQLNEALELIESMLVEPDGAVW-GALLGACKIHKNVELAELAFGKVI---- 344
                  + G+ NEALEL   ML +PD  V   A   +C +     L  L FG+ I    
Sbjct: 466 VLIGGNAQHGEANEALELFSQML-QPDNFVMPNAFTISCALMACARLGALRFGRQIHAYV 524

Query: 345 ---KLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380
              + E         L ++YS++ ++D    V   M +R
Sbjct: 525 LRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQR 563



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/408 (27%), Positives = 197/408 (48%), Gaps = 53/408 (12%)

Query: 1   VFDE-SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICV 58
           VFDE   +     V +N++++ Y+       A+ +F +M E  G+  ++V+++ +LP C 
Sbjct: 202 VFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACA 261

Query: 59  DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
             G    G   H   ++ GL  D  VGN ++ MY KCG ++   K+F+++  K +++WNA
Sbjct: 262 SVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNA 321

Query: 119 M-----------------------------------ISGYAQNGLATHVLELYREMKSLG 143
           M                                   I+GYAQ GL    L+++R+M   G
Sbjct: 322 MVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCG 381

Query: 144 VCPDAVTFVGVLSSCAHLG-------AHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196
             P+ VT V +LS CA  G        H   ++    +  N  G +  + NALI+MY++C
Sbjct: 382 SEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKC 441

Query: 197 GNLKKARAIFDGMPRK--TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG--IRPDGTAF 252
            + K ARA+FD +P K  +VV+WT +IGG   HG    A++LF +ML+    + P+    
Sbjct: 442 KSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTI 501

Query: 253 VSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
              L AC+  G    G + + Y ++N++          C++D+  ++G ++ A  + ++M
Sbjct: 502 SCALMACARLGALRFGRQIHAYVLRNRFE-SAMLFVANCLIDMYSKSGDVDAARVVFDNM 560

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLL 357
             + +G  W +L+    +H   E A   F ++ K  L P    + V+L
Sbjct: 561 H-QRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVL 607


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/508 (39%), Positives = 319/508 (62%), Gaps = 10/508 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++I+ Y  N+  S A+  F  M+  G+  + +T++ L  I        +       
Sbjct: 289 VSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGF 348

Query: 73  CVKFG-LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
            ++   LD D  +GN L+ MY K G ++    +FDQ+P K  I+WN +++GY QNGLA+ 
Sbjct: 349 VIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASE 408

Query: 132 VLELYREMKSL-GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
            ++ Y  M+      P+  T+V ++ + +H+GA   G+++  ++  N    + F+   LI
Sbjct: 409 AIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLI 468

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           ++Y +CG L+ A ++F  +PR T V W AII   GIHG GE A+QLF +ML   ++ D  
Sbjct: 469 DLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHI 528

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            FVS+LSACSH+GL D+G + F  M+ +YG++P  +HY CMVDLLGRAG L +A EL+ +
Sbjct: 529 TFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRN 588

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M ++PD ++WGALL ACKI+ N EL  LA  ++++++  N GYYVLLSNIY+     +G+
Sbjct: 589 MPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGV 648

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD----KLENL--V 424
           ++VR + R+R L+K PG+S V +  +  +F  G++ H +  EIY+ L     K+++L  V
Sbjct: 649 IKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYV 708

Query: 425 QEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
            ++    +  +++ +E + ++  HSE+LAIAFGII+T P + I + KNLR+CGDCH   K
Sbjct: 709 PDYSFVYQDIEEDEKEQILNS--HSERLAIAFGIISTPPRSPIRIFKNLRVCGDCHNATK 766

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSC 512
            +S+I +R+ +VRD+ RFHHFK G CSC
Sbjct: 767 YISRISEREIVVRDSNRFHHFKDGICSC 794



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 175/333 (52%), Gaps = 6/333 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NA+ISG+  N   + A+ +  +M+ +GV+++++T+  +LP+C     +  G+  H   +
Sbjct: 190 WNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVL 249

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K GLD D  V N L+ MY K G +   + +FDQ+  + L++WN++I+ Y QN   +  L 
Sbjct: 250 KHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALR 309

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ-QIQANGFGSNPFLNNALINMY 193
            ++ M+  G+ PD +T V + S  + L    +   +    I+      +  + NAL+NMY
Sbjct: 310 FFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMY 369

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK-SGIRPDGTAF 252
           A+ G +  A  +FD +PRK  +SW  ++ GY  +G    A+  ++ M +     P+   +
Sbjct: 370 AKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTW 429

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           VS++ A SH G   +G++  +    K  L       TC++DL G+ G+L +A+ L     
Sbjct: 430 VSIIPAYSHVGALQQGMK-IHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYE-- 486

Query: 313 VEPDGAV-WGALLGACKIHKNVELAELAFGKVI 344
           +  D +V W A++ +  IH   E A   F  ++
Sbjct: 487 IPRDTSVPWNAIIASLGIHGRGEEALQLFKDML 519



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/267 (32%), Positives = 129/267 (48%), Gaps = 29/267 (10%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLC--------------LLPICVDP 60
           +N++IS YV           FGK  E    +N +  +C              +L  CV  
Sbjct: 88  WNSIISAYVR----------FGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVS- 136

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   HC   K G + D  V   L+ +Y + G +D   K+F  +P K + +WNAMI
Sbjct: 137 --LVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMI 194

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SG+ QNG A   L +   MK  GV  D +T   +L  CA       G+ +   +  +G  
Sbjct: 195 SGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLD 254

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S+ F++NALINMY++ G L+ A+ +FD M  + +VSW +II  Y  +     A++ F  M
Sbjct: 255 SDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGM 314

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDK 267
              GIRPD    VS+ S  S   L+D+
Sbjct: 315 QLGGIRPDLLTVVSLTSIFSQ--LSDQ 339



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 125/246 (50%), Gaps = 7/246 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICVD 59
           VFD+  +    T+ +N L++GY  N L SEA+  +  M E +    N  T + ++P    
Sbjct: 381 VFDQLPRKD--TISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSH 438

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
            G L  GM  H   +K  L LD  V  CL+ +Y KCG ++    LF ++P    + WNA+
Sbjct: 439 VGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAI 498

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I+    +G     L+L+++M +  V  D +TFV +LS+C+H G    G +    +Q   +
Sbjct: 499 IASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKE-Y 557

Query: 180 GSNPFLNN--ALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQL 236
           G  P L +   ++++  R G L+KA  +   MP +   S W A++    I+G+ E+    
Sbjct: 558 GIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLA 617

Query: 237 FDEMLK 242
            D +L+
Sbjct: 618 SDRLLE 623



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 136/282 (48%), Gaps = 12/282 (4%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H + + FG   +  +   L+ +YV  G +   R  FD + +K + +WN++IS Y + G  
Sbjct: 42  HALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKY 101

Query: 130 THVLELYREMKSL----GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
              +    ++ S+     + PD  TF  +L +C  L     G +V   +   GF  + F+
Sbjct: 102 HEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFKMGFEDDVFV 158

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
             +L+++Y+R G L  A  +F  MP K V SW A+I G+  +G+   A+ + + M   G+
Sbjct: 159 AASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGV 218

Query: 246 RPDGTAFVSVLSACSHAGLTDKG-LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
           + D     S+L  C+ +     G L + + +  K+GL         ++++  + G+L +A
Sbjct: 219 KMDTITVASILPVCAQSDDVINGVLIHLHVL--KHGLDSDVFVSNALINMYSKFGRLQDA 276

Query: 305 LELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
             + + M V  D   W +++ A + + +   A L F K ++L
Sbjct: 277 QMVFDQMEVR-DLVSWNSIIAAYEQNNDPSTA-LRFFKGMQL 316


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/515 (41%), Positives = 300/515 (58%), Gaps = 37/515 (7%)

Query: 38  MREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS 97
           M  +GV+ N  T+  ++  C     L  G   H   +K G + D  V   L+ MY +CGS
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 98  VDYGRKLFDQVPEKGLITWNAMISG-------------------------------YAQN 126
           ++    +FD++ E+   TWNAMI+G                               YAQN
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
           G     L ++ +M+  G+  D      VLS+CA L A  +G +    +  +GF  +  + 
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVG 180

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           +AL++MYA+ G+++ A  +FD MP++  VSW +II G   HG G  AV LF++ML++GI+
Sbjct: 181 SALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIK 240

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           P+  +FV VLSACSH GL ++G  YF  M   YG+ P   HYTCM+DLLGRAG L+EA  
Sbjct: 241 PNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAEN 300

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366
            I  M VEPD +VWGALLGAC+IH N ELA+     ++ +E    G YVLLSNIY+ A  
Sbjct: 301 FINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQ 360

Query: 367 LDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE 426
            D   +VR +M++R + K PGYS++E+K  +H F+ G+ +H Q  EI+  L+ L   ++ 
Sbjct: 361 WDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKMKA 420

Query: 427 -----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHL 481
                +      D ++ E+ L+ +  HSEKLAIAFGIINT+PGT I V KNLR+CGDCH 
Sbjct: 421 AGYVPNKNFVLQDVEDDEKELSLSH-HSEKLAIAFGIINTNPGTTIRVAKNLRVCGDCHT 479

Query: 482 FIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            IK +S    R+ +VRDA RFHHFK G CSC DYW
Sbjct: 480 VIKFISLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 167/310 (53%), Gaps = 14/310 (4%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+I+GY  N    E++++F +MR+ G++ +   M  +L  C D   L LG   H  
Sbjct: 108 VSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAY 167

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            V+ G  LD  VG+ L+ MY K GS++   ++FD++P++  ++WN++I+G AQ+G     
Sbjct: 168 VVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDA 227

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           + L+ +M   G+ P+ ++FVGVLS+C+H G  + G      +  N +G  P +++   +I
Sbjct: 228 VLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQN-YGIVPDVSHYTCMI 286

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++  R G L +A    +GMP +  VS W A++G   IHG+ E+A ++ + +L   ++  G
Sbjct: 287 DLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAG 346

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA--------GQL 301
             +V + +  + AG  D   +    MK++ G+   P +    V  +  A         QL
Sbjct: 347 I-YVLLSNIYAAAGQWDDAAKVRKLMKDR-GVMKQPGYSWIEVKTIMHAFVAGETSHPQL 404

Query: 302 NEALELIESM 311
            E  E +ES+
Sbjct: 405 KEIHEFLESL 414


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/547 (39%), Positives = 303/547 (55%), Gaps = 46/547 (8%)

Query: 13  VCYNALISGYVLNSL-----VSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           + ++A+I+GY  +       + E   L  +MR +GV  N VT + +L  C   G L  G 
Sbjct: 347 ISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGR 406

Query: 68  CCHCICVKFGLDLDFSVGNC-------------------------------LMTMYVKCG 96
             H    K G + D S+                                  L+TMY+KCG
Sbjct: 407 QIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCG 466

Query: 97  SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS 156
            +    K+F ++  + +++WN MI+GYAQ+G    V EL   MK  G  PD VT + +L 
Sbjct: 467 DLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILE 526

Query: 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS 216
           +C  L A   G  V  +    G  S+  +  +LI MY++CG + +AR +FD +  +  V+
Sbjct: 527 ACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVA 586

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
           W A++ GYG HG G  AV LF  MLK  + P+   F +V+SAC  AGL  +G E F  M+
Sbjct: 587 WNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQ 646

Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELA 336
             + ++PG +HY CMVDLLGRAG+L EA E I+ M  EPD +VW ALLGACK H NV+LA
Sbjct: 647 EDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLA 706

Query: 337 ELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGR 396
           E A   +++LEP N   YV LSNIY++A   D   +VR +M ++ LKKD G S +E+ GR
Sbjct: 707 EWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGR 766

Query: 397 VHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK-------RSDQKNSEEHLNDTEVHS 449
           +H F+  D  H +   I+  L+ L   ++E   T          D+   E  L     HS
Sbjct: 767 IHTFVAEDCAHPEIDSIHAELEMLTKEMKEAGYTPDMRFVLHDVDEVQKERALCH---HS 823

Query: 450 EKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGF 509
           EKLAIA+G++ T PGT I +MKNLR+CGDCH   K +SKI  R+ + RDA RFH+FK+G 
Sbjct: 824 EKLAIAYGLLKTPPGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFKNGT 883

Query: 510 CSCKDYW 516
           CSC D+W
Sbjct: 884 CSCGDFW 890



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 166/317 (52%), Gaps = 7/317 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++++I+ Y  N+  ++A   F +M++  +E N +T L +L  C +   L      H +
Sbjct: 145 VTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTV 204

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               G++ D +V   L+TMY KCG +    ++F ++ E+ +++W A+I   AQ+      
Sbjct: 205 VKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEA 264

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            ELY +M   G+ P+AVTFV +L+SC    A + G  +   I   G  ++  + NALI M
Sbjct: 265 FELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITM 324

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV-----AVQLFDEMLKSGIRP 247
           Y +C  ++ AR  FD M ++ V+SW+A+I GY   G+ +        QL + M + G+ P
Sbjct: 325 YCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFP 384

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           +   F+S+L ACS  G  ++G +  +   +K G +      T + ++  + G + EA E 
Sbjct: 385 NKVTFMSILKACSVHGALEQGRQ-IHAEISKVGFESDRSLQTAIFNMYAKCGSIYEA-EQ 442

Query: 308 IESMLVEPDGAVWGALL 324
           + S +   +   W +LL
Sbjct: 443 VFSKMENKNVVAWASLL 459



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 118/427 (27%), Positives = 194/427 (45%), Gaps = 46/427 (10%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+I     +  ++EA  L+ KM + G+  N+VT + LL  C  P  L  G   H  
Sbjct: 246 VSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSH 305

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT-- 130
             + GL+ D  V N L+TMY KC  +   R+ FD++ ++ +I+W+AMI+GYAQ+G     
Sbjct: 306 ISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKE 365

Query: 131 ---HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
               V +L   M+  GV P+ VTF+ +L +C+  GA   G ++  +I   GF S+  L  
Sbjct: 366 SLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQT 425

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAI--------------------------- 220
           A+ NMYA+CG++ +A  +F  M  K VV+W ++                           
Sbjct: 426 AIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVS 485

Query: 221 ----IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
               I GY   G      +L   M   G +PD    +S+L AC      ++G +  +   
Sbjct: 486 WNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERG-KLVHAEA 544

Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELA 336
            K GL+      T ++ +  + G++ EA  + +  +   D   W A+L     H     A
Sbjct: 545 VKLGLESDTVVATSLIGMYSKCGEVTEARTVFDK-ISNRDTVAWNAMLAGYGQHGIGPEA 603

Query: 337 ELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSY---- 390
              F +++K  + P    +  ++S         +G    R+M  + R+K  PG  +    
Sbjct: 604 VDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMK--PGKQHYGCM 661

Query: 391 VELKGRV 397
           V+L GR 
Sbjct: 662 VDLLGRA 668



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 173/357 (48%), Gaps = 38/357 (10%)

Query: 28  VSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNC 87
           + EA+ L G ++++G+ +NS T  C++  C        G   H    + GL +D  +GN 
Sbjct: 59  LKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNS 118

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L+  Y K G V    ++F ++  + ++TW++MI+ YA N       + +  MK   + P+
Sbjct: 119 LINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPN 178

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
            +TF+ +L +C +        E+   ++A+G  ++  +  ALI MY++CG +  A  IF 
Sbjct: 179 RITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQ 238

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS------- 260
            M  + VVSWTAII     H     A +L+++ML++GI P+   FVS+L++C+       
Sbjct: 239 KMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNR 298

Query: 261 ----HAGLTDKGLEYFYGMKNKY--------GLQPGPE-----------HYTCMVDLLGR 297
               H+ ++++GLE    + N           +Q   E            ++ M+    +
Sbjct: 299 GRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQ 358

Query: 298 AG-----QLNEALELIESMLVE---PDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
           +G      L+E  +L+E M  E   P+   + ++L AC +H  +E       ++ K+
Sbjct: 359 SGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKV 415



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 142/282 (50%), Gaps = 9/282 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF E   ST   V +N +I+GY  +  +++   L   M+ +G + + VT++ +L  C   
Sbjct: 474 VFSE--MSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGAL 531

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H   VK GL+ D  V   L+ MY KCG V   R +FD++  +  + WNAM+
Sbjct: 532 SALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAML 591

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GY Q+G+    ++L++ M    V P+ +TF  V+S+C   G    G E+ + +Q + F 
Sbjct: 592 AGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQED-FR 650

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLF 237
             P   +   ++++  R G L++A      MP +  +S W A++G    H + ++A    
Sbjct: 651 MKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAA 710

Query: 238 DEMLKSGIRP-DGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278
             +L+  + P + + +V++ +  + AG  D   +    M +K
Sbjct: 711 HHILR--LEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDK 750



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 126/261 (48%), Gaps = 5/261 (1%)

Query: 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
           G     ++L   +K  G+  ++ T+  ++  CA L     G  V +Q+   G   + +L 
Sbjct: 57  GRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLG 116

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           N+LIN Y++ G++     +F  M  + VV+W+++I  Y  + H   A   F+ M  + I 
Sbjct: 117 NSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIE 176

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           P+   F+S+L AC++  + +K  E    +K   G++      T ++ +  + G+++ A E
Sbjct: 177 PNRITFLSILKACNNYSMLEKAREIHTVVKAS-GMETDVAVATALITMYSKCGEISLACE 235

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEA 364
           + + M  E +   W A++ A   H+ +  A   + K+++  + P N   +V L N  +  
Sbjct: 236 IFQKM-KERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISP-NAVTFVSLLNSCNTP 293

Query: 365 RNLDGIMRVRMMMRERRLKKD 385
             L+   R+   + ER L+ D
Sbjct: 294 EALNRGRRIHSHISERGLETD 314


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/512 (39%), Positives = 318/512 (62%), Gaps = 4/512 (0%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           + +   +NALI G+V N    +A+ L+  MR  G+E +  T+  LL  C     L  G  
Sbjct: 464 SKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKE 523

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            H   ++ G +LD  +   L+++YV+CG +   +  FD + EK L+ WN MI+G++QN  
Sbjct: 524 IHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEF 583

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
               L+++ +M S  + PD ++ +G L +C+ + A  +G E+      +    + F+  +
Sbjct: 584 PFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCS 643

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           LI+MYA+CG +++++ IFD +  K  V+W  +I GYGIHGHG  A++LF  M  +G RPD
Sbjct: 644 LIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPD 703

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
              F+++L+AC+HAGL  +GLEY   M++ +G++P  EHY C+VD+LGRAG+LNEALEL+
Sbjct: 704 SVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELV 763

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
             +  +PD  +W +LL +C+ ++++++ E    K+++L P     YVL+SN Y+     D
Sbjct: 764 NELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFYARLGKWD 823

Query: 369 GIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ--- 425
            + ++R  M+E  L+KD G S++E+ G+V  F+VGD +  Q+++I +   +LE  +    
Sbjct: 824 EVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRFLVGDESLLQSMKIQQTWIELEKKINKIG 883

Query: 426 -EHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
            + D +    +   +E +     HSEKLAI+FG++NT+ GT + V KNLRIC DCH  IK
Sbjct: 884 YKPDTSCVLHELEEDEKIKILRNHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIK 943

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           LVSKI  R+ IVRD  RFHHFK+GFCSC DYW
Sbjct: 944 LVSKIDKREIIVRDNKRFHHFKNGFCSCGDYW 975



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 169/336 (50%), Gaps = 15/336 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVD 59
           +FD + K+    + +N++I GY  +     A  L  KM+ E  V++N VT+L +LP+C +
Sbjct: 356 LFDTNEKNV---ISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEE 412

Query: 60  PGYLWLGMCCHCICVKFG-LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
                     H   ++ G +  D  V N  +  Y KCGS+ Y   +F  +  K + +WNA
Sbjct: 413 EIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNA 472

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           +I G+ QNG     L+LY  M+  G+ PD  T   +LS+CA L + S G E+   +  NG
Sbjct: 473 LIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNG 532

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
           F  + F+  +L+++Y +CG +  A+  FD M  K +V W  +I G+  +     A+ +F 
Sbjct: 533 FELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFH 592

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEH--YTC-MVDL 294
           +ML S I PD  + +  L ACS       G E + + +K+        EH   TC ++D+
Sbjct: 593 QMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHL-----TEHSFVTCSLIDM 647

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
             + G + ++  + + + ++ +   W  L+    IH
Sbjct: 648 YAKCGCMEQSQNIFDRVHLKGE-VTWNVLITGYGIH 682



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 135/249 (54%), Gaps = 5/249 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEI-NSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +NAL+SGY+ NSL  +AV +F +M      + ++ T+ C++  CV    + LG   H   
Sbjct: 163 WNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFA 222

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           +K  +  D  VGN L+ MY K G V+   K+FD++P++ L++WN+++    +NG+     
Sbjct: 223 LKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESY 282

Query: 134 ELYREMKS--LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L++ + +   G+ PD  T V V+  CA  G   +G+         G      +N++L++
Sbjct: 283 GLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLD 342

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM-LKSGIRPDGT 250
           MY++CG L +AR +FD    K V+SW ++IGGY        A +L  +M ++  ++ +  
Sbjct: 343 MYSKCGYLCEARVLFD-TNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEV 401

Query: 251 AFVSVLSAC 259
             ++VL  C
Sbjct: 402 TLLNVLPVC 410



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 119/241 (49%), Gaps = 6/241 (2%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG-VCP 146
           L+TMY  C S      +F+    K L  WNA++SGY +N L    + ++ EM SL    P
Sbjct: 135 LVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVP 194

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF 206
           D  T   V+ +C  +    +G  V          S+ F+ NALI MY + G ++ A  +F
Sbjct: 195 DNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVF 254

Query: 207 DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK--SGIRPDGTAFVSVLSACSHAGL 264
           D MP++ +VSW +++     +G  E +  LF  +L    G+ PD    V+V+  C+  G 
Sbjct: 255 DKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGE 314

Query: 265 TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
              G+  F+G+  K GL    +  + ++D+  + G L EA  L ++   E +   W +++
Sbjct: 315 VRLGM-VFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFDTN--EKNVISWNSMI 371

Query: 325 G 325
           G
Sbjct: 372 G 372



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 78/177 (44%), Gaps = 6/177 (3%)

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANG-FGSNPFLNNALINMYARCGNLKKARAIFDGMPRK 212
           +L  C       +G ++   I  +  F ++  L   L+ MY+ C +   +  +F+   RK
Sbjct: 99  LLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRK 158

Query: 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLK-SGIRPDGTAFVSVLSACSHAGLTDKGL-E 270
            +  W A++ GY  +     AV +F EM+  +   PD      V+ AC   G+ D  L E
Sbjct: 159 NLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKAC--VGVYDVRLGE 216

Query: 271 YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
             +G   K  +         ++ + G+ G +  A+++ + M  + +   W +++ AC
Sbjct: 217 AVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKM-PQRNLVSWNSVMYAC 272


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/555 (38%), Positives = 320/555 (57%), Gaps = 41/555 (7%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF+  +++  L   +NA+ISGYV      EA++L  KMR  G++ + +T   ++  C + 
Sbjct: 245 VFEAMVEN--LGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANV 302

Query: 61  GYLWLGMCCHCICVKFGLDLD----FSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
           G   +G   H   +K  L+ +     SV N L+T+Y K   VD  RK+F  +P + +ITW
Sbjct: 303 GSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITW 362

Query: 117 NAMISGY-------------------------------AQNGLATHVLELYREMKSLGVC 145
           NA++SGY                               AQNG     L+L+++M+  G  
Sbjct: 363 NAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFE 422

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P    F G L++C+ LGA   G ++  Q+   G+ S+  + NA+I+MYA+CG ++ A ++
Sbjct: 423 PCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESV 482

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           F  MP   +VSW ++I   G HGHG  A++LFD+MLK G+ PD   F++VL+ACSHAGL 
Sbjct: 483 FVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLV 542

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           +KG  YF  M   YG+ P  +HY  MVDL  RAG  + A  +I+SM  +P   VW ALL 
Sbjct: 543 EKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLA 602

Query: 326 ACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKD 385
            C+IH N++L   A  ++ KL P N G YVLLSNIY++    + + +VR +MR++ ++K+
Sbjct: 603 GCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKE 662

Query: 386 PGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL----ENLVQEHDGTKRSDQKNSEEH 441
           P  S++E++ +VH+FMV D  H + + +YR L++L    + L    D          E+ 
Sbjct: 663 PACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQK 722

Query: 442 LNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATR 501
            +    HSEKLA+ FGI+   PG  + V KN+RICGDCH   K +SK+  R+ IVRD  R
Sbjct: 723 EHALSTHSEKLAVGFGIMKLPPGATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKR 782

Query: 502 FHHFKSGFCSCKDYW 516
           FHHFK+G CSC+DYW
Sbjct: 783 FHHFKNGDCSCRDYW 797



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 118/429 (27%), Positives = 178/429 (41%), Gaps = 117/429 (27%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLG---MC 68
           +V YNA+I+GY  N     A+ LF  MR      +  T   +L   V    L++G    C
Sbjct: 112 SVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALV----LFVGNEQQC 167

Query: 69  --CHCICVKFGLD-LDFSVGNCLMTMYVK--------CGSVDYGRKLFDQVPEKGLIT-- 115
              HC  VK G+  +  SV N L+++YVK        C ++   RKLFD++P++  +T  
Sbjct: 168 GQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWT 227

Query: 116 -----------------------------WNAMISGYAQNGLATHVLELYREMKSLGVCP 146
                                        WNAMISGY   G     L L R+M+ LG+  
Sbjct: 228 TMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQF 287

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP----FLNNALINMYARCGNLKKA 202
           D +T+  ++S+CA++G+  +G +V   I  N    N      ++NALI +Y +   + +A
Sbjct: 288 DDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEA 347

Query: 203 RAIFDGMPRKTVVSWTAIIGGY-------------------------------GIHGHGE 231
           R IF  MP + +++W AI+ GY                                 +G G+
Sbjct: 348 RKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGD 407

Query: 232 VAVQLFDEMLKSGIRPDGTAFVSVLSACS-----------HAGLTDKGLEYFYGMKN--- 277
             ++LF +M   G  P   AF   L+ACS           HA L   G E    + N   
Sbjct: 408 EGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMI 467

Query: 278 ----KYGLQPGPE------------HYTCMVDLLGRAGQLNEALELIESMLVE---PDGA 318
               K G+    E             +  M+  LG+ G   +A+EL + ML E   PD  
Sbjct: 468 SMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRI 527

Query: 319 VWGALLGAC 327
            +  +L AC
Sbjct: 528 TFLTVLTAC 536



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 134/289 (46%), Gaps = 57/289 (19%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVP--EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           L+T Y   G+++ GR++F+  P   +  + +NAMI+GYA NG     LEL+R M+     
Sbjct: 85  LITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFR 144

Query: 146 PDAVTFVGVLSSCA-HLGAHSVGLEVEQQIQANGFG--SNPFLNNALINMYAR------- 195
           PD  TF  VLS+    +G      ++   +   G G  S+  L NAL+++Y +       
Sbjct: 145 PDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVL-NALLSVYVKRASELGI 203

Query: 196 -CGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS----------- 243
            C  +  AR +FD MP++  ++WT +I GY  +     A ++F+ M+++           
Sbjct: 204 SCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISG 263

Query: 244 --------------------GIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQ 282
                               GI+ D   + +++SAC++ G    G + + Y +KN+    
Sbjct: 264 YVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNEL--- 320

Query: 283 PGPEHYTC------MVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
             P H  C      ++ L  +  +++EA ++  +M V  +   W A+L 
Sbjct: 321 -NPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVR-NIITWNAILS 367



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 87/237 (36%), Gaps = 74/237 (31%)

Query: 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP------RKTVV 215
            + S+   V   + A+GF       N L+ MY +  NL  AR +F+ +P      R T++
Sbjct: 27  ASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLI 86

Query: 216 S---------------------------WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           +                           + A+I GY  +G G  A++LF  M +   RPD
Sbjct: 87  TAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPD 146

Query: 249 GTAFVSVLSA------------------------CSHAGLTDKGLEYFYGMKNKYGLQ-- 282
              F SVLSA                        C  + + +  L  +    ++ G+   
Sbjct: 147 DFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCS 206

Query: 283 ------------PGPEH--YTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
                       P  +   +T M+    R   LN A E+ E+M VE  GA W A++ 
Sbjct: 207 AMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAM-VENLGAAWNAMIS 262


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/477 (41%), Positives = 299/477 (62%), Gaps = 7/477 (1%)

Query: 46  NSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLF 105
           + VTM+ L+P C   G L  G   H    + GLD + SV N ++ MY KC  ++  +++F
Sbjct: 10  DEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQEVF 69

Query: 106 DQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHS 165
           +++ EK +++W +M+SG A++G     L L+R+M+   + PD +T VGVLS+CA  GA  
Sbjct: 70  NRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGALD 129

Query: 166 VGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYG 225
            G  +   I       +  L  AL++MYA+CG++  A  +F  M  + V +W A+IGG  
Sbjct: 130 QGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLA 189

Query: 226 IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
           +HGHGE A+ LFD+M    + PD   F+++L ACSHAGL D+GL  F  MKNK+ ++P  
Sbjct: 190 MHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRM 249

Query: 286 EHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345
           EHY C+VDLL RA ++++AL  IE+M ++ +  +W  LLGAC+   + +LAE    +VI+
Sbjct: 250 EHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIXRRVIE 309

Query: 346 LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDR 405
           LEP + G YV+LSN+Y+     D  +++R  M+ + ++K PG S++EL G +H F+ GDR
Sbjct: 310 LEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDR 369

Query: 406 NHHQTVEIYRMLDKLENLVQEHDGTKRSDQKN------SEEHLNDTEVHSEKLAIAFGII 459
           +H QT +IY M++++   V   DG       N       EE  +   +HSEKLAIA G+I
Sbjct: 370 SHLQTEQIYAMIEEMTRRVN-LDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLI 428

Query: 460 NTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +T  G+ I ++KNLR+C DCH F+K+ SK+ +R+ + RD +RFHHFK G CSC D+W
Sbjct: 429 STPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 485



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 144/276 (52%), Gaps = 10/276 (3%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           + +++SG   +    E+++LF KM+   +E + +T++ +L  C   G L  G   H +  
Sbjct: 80  WTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGALDQGKYIHLLID 139

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           KF ++ D  +   L+ MY KCGS+D   ++F ++  + + TWNAMI G A +G     + 
Sbjct: 140 KFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAIS 199

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALINM 192
           L+ +M+   + PD VTF+ +L +C+H G    GL + Q ++ N F   P + +   ++++
Sbjct: 200 LFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMK-NKFQIEPRMEHYGCVVDL 258

Query: 193 YARCGNLKKARAIFDGMPRKT-VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
             R   +  A A  + MP K   V W  ++G     GH ++A ++   +++  + PD   
Sbjct: 259 LCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIXRRVIE--LEPDSCG 316

Query: 252 FVSVLSACSHAGLT--DKGLEYFYGMKNKYGLQPGP 285
              +LS   +AG++  D  L+    MKNK G++  P
Sbjct: 317 RYVMLSNL-YAGVSQWDHALKLRKQMKNK-GIEKTP 350



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 114/214 (53%), Gaps = 4/214 (1%)

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           PD VT V ++ +CA LG    G  +    +  G   N  +NNA+++MY +C +++ A+ +
Sbjct: 9   PDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQEV 68

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           F+ +  K V+SWT+++ G    G+ + ++ LF +M    I PD    V VLSAC+  G  
Sbjct: 69  FNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGAL 128

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           D+G +Y + + +K+ +       T +VD+  + G ++ AL++   M V  +   W A++G
Sbjct: 129 DQG-KYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR-NVFTWNAMIG 186

Query: 326 ACKIHKNVELAELAFGKV--IKLEPMNTGYYVLL 357
              +H + E A   F ++   KL P +  +  LL
Sbjct: 187 GLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALL 220


>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/510 (41%), Positives = 308/510 (60%), Gaps = 11/510 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N+LI          +AV  + +M    +  ++ T   ++  C D   L LG   H    
Sbjct: 76  FNSLIKASSNFGFSLDAVFFYRRMLHSRIVPSTYTFTSVIKACADLSLLRLGTIVHSHVF 135

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             G   +  V   L+T Y K  +    RK+FD++P++ +I WN+MISGY QNGLA+  +E
Sbjct: 136 VSGYASNSFVQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQNGLASEAVE 195

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           ++ +M+  G  PD+ TFV VLS+C+ LG+  +G  + + I   G   N  L  +L+NM++
Sbjct: 196 VFNKMRESGGEPDSATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMNVVLATSLVNMFS 255

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           RCG++ +ARA+FD M    VVSWTA+I GYG+HG+G  A+++F  M   G+ P+   +V+
Sbjct: 256 RCGDVGRARAVFDSMNEGNVVSWTAMISGYGMHGYGVEAMEVFHRMKACGVVPNRVTYVA 315

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VLSAC+HAGL ++G   F  MK +YG+ PG EH+ CMVD+ GR G LNEA + +  +  E
Sbjct: 316 VLSACAHAGLINEGRLVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVRGLSSE 375

Query: 315 P-DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
               AVW A+LGACK+HKN +L       +I  EP N G+YVLLSN+Y+ A  +D +  V
Sbjct: 376 ELVPAVWTAMLGACKMHKNFDLGVEVAENLISAEPENPGHYVLLSNMYALAGRMDRVESV 435

Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS 433
           R +M +R LKK  GYS ++++ R +LF +GD++H +T EIY  LD+L    ++      +
Sbjct: 436 RNVMIQRGLKKQVGYSTIDVENRSYLFSMGDKSHPETNEIYCYLDELMWRCKD---AGYA 492

Query: 434 DQKNSEEHLNDT-------EVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
               S  H  +          HSEKLA+AFG++ T  G  + ++KNLRIC DCH  IK +
Sbjct: 493 PAPESAMHELEEEEREYALRYHSEKLAVAFGLMKTCHGVTLRIVKNLRICEDCHSAIKFI 552

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           S +++R+ IVRD  RFHHF+ G CSC DYW
Sbjct: 553 SVVMNREIIVRDKLRFHHFREGSCSCSDYW 582



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 83/247 (33%), Positives = 139/247 (56%), Gaps = 7/247 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  + +   + +N++ISGY  N L SEAV +F KMRE G E +S T + +L  C   
Sbjct: 165 VFDEMPQRS--IIAWNSMISGYEQNGLASEAVEVFNKMRESGGEPDSATFVSVLSACSQL 222

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L LG   H   V  G+ ++  +   L+ M+ +CG V   R +FD + E  +++W AMI
Sbjct: 223 GSLDLGCWLHECIVGTGIRMNVVLATSLVNMFSRCGDVGRARAVFDSMNEGNVVSWTAMI 282

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGY  +G     +E++  MK+ GV P+ VT+V VLS+CAH G  + G  V   ++   +G
Sbjct: 283 SGYGMHGYGVEAMEVFHRMKACGVVPNRVTYVAVLSACAHAGLINEGRLVFASMKQE-YG 341

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMPRKTVVS--WTAIIGGYGIHGHGEVAVQL 236
             P + +   +++M+ R G L +A     G+  + +V   WTA++G   +H + ++ V++
Sbjct: 342 VVPGVEHHVCMVDMFGRGGLLNEAYQFVRGLSSEELVPAVWTAMLGACKMHKNFDLGVEV 401

Query: 237 FDEMLKS 243
            + ++ +
Sbjct: 402 AENLISA 408



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 126/243 (51%), Gaps = 2/243 (0%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L+T+    GS+ Y R+LF  V +     +N++I   +  G +   +  YR M    + P 
Sbjct: 48  LLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKASSNFGFSLDAVFFYRRMLHSRIVPS 107

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
             TF  V+ +CA L    +G  V   +  +G+ SN F+  AL+  YA+    + AR +FD
Sbjct: 108 TYTFTSVIKACADLSLLRLGTIVHSHVFVSGYASNSFVQAALVTFYAKSCTPRVARKVFD 167

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            MP++++++W ++I GY  +G    AV++F++M +SG  PD   FVSVLSACS  G  D 
Sbjct: 168 EMPQRSIIAWNSMISGYEQNGLASEAVEVFNKMRESGGEPDSATFVSVLSACSQLGSLDL 227

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           G  + +      G++      T +V++  R G +  A  + +SM  E +   W A++   
Sbjct: 228 GC-WLHECIVGTGIRMNVVLATSLVNMFSRCGDVGRARAVFDSM-NEGNVVSWTAMISGY 285

Query: 328 KIH 330
            +H
Sbjct: 286 GMH 288


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/508 (39%), Positives = 312/508 (61%), Gaps = 5/508 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  LISGY  +   SEA++LF KM   G + N  T+  LL           G   H  
Sbjct: 172 VSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAF 231

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K+G D++  VG+ L+ MY +   +   + +F+ +  K +++WNA+I+G+A+ G   HV
Sbjct: 232 SLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHV 291

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + L+ +M   G  P   T+  V ++CA  G+   G  V   +  +G     ++ N LI+M
Sbjct: 292 MRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDM 351

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+ G++K A+ +F  + ++ +VSW +II GY  HG G  A+QLF++MLK+ ++P+   F
Sbjct: 352 YAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITF 411

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +SVL+ACSH+GL D+G +Y++ +  K+ ++    H+  +VDLLGRAG+LNEA + IE M 
Sbjct: 412 LSVLTACSHSGLLDEG-QYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMP 470

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           ++P  AVWGALLG+C++HKN++L   A  ++ +L+P ++G +VLLSNIY+ A  L    +
Sbjct: 471 IKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAK 530

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----HD 428
           VR MM+E  +KK+P  S+VE++  VH+F+  D +H    EI RM +K+   ++E     D
Sbjct: 531 VRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPD 590

Query: 429 GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
            +      N ++     + HSEKLA+AF ++ T PG  I + KN+RICGDCH   K  S+
Sbjct: 591 TSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFASR 650

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           ++ R+ IVRD  RFHHF  G CSC+DYW
Sbjct: 651 VLGREIIVRDTNRFHHFLHGMCSCRDYW 678



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 2/180 (1%)

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P+   +  +L+ C +L     G  +   IQ++ F  +  L N ++NMYA+CG+L++A+ +
Sbjct: 103 PERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDL 162

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           FD MP K +VSWT +I GY   G    A+ LF +ML  G +P+     S+L A S  G +
Sbjct: 163 FDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKA-SGTGPS 221

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           D      +    KYG        + ++D+  R   + EA ++I + L   +   W AL+ 
Sbjct: 222 DHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREA-KVIFNSLAAKNVVSWNALIA 280


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/513 (40%), Positives = 308/513 (60%), Gaps = 14/513 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NALISG    +  +EA+SLF +MR++G ++N  T+  +L        +      H +
Sbjct: 370 VLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHAL 429

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K G   D  V N L+  Y KC  ++Y  ++F++     +I + +MI+  +Q       
Sbjct: 430 AEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDA 489

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           ++L+ EM   G+ PD      +L++CA L A+  G +V   +    F S+ F  NAL+  
Sbjct: 490 IKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYT 549

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG+++ A   F G+P K VVSW+A+IGG   HGHG+ A+ +F  M+   I P+    
Sbjct: 550 YAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITM 609

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            SVL AC+HAGL D+   YF  MK  +G++   EHY CM+DLLGRAG+L++A+EL+ SM 
Sbjct: 610 TSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMP 669

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            + + AVWGALL A ++H++ EL  LA  K+  LEP  +G +VLL+N Y+ A   D + +
Sbjct: 670 FQTNAAVWGALLAASRVHRDPELGRLAAEKLFILEPEKSGTHVLLANTYASAGMWDDVAK 729

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR +M++ ++KK+P  S+VELK +VH F+VGD++H +  +IY  LD+L +L+     TK 
Sbjct: 730 VRKLMKDSKVKKEPAMSWVELKDKVHTFIVGDKSHPRARDIYAKLDELGDLM-----TKA 784

Query: 433 SDQKNSEEHLNDTEV---------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFI 483
               N E  L+D +          HSE+LA+AF +I+T  G  I V KNLRIC DCH   
Sbjct: 785 GYVPNVEVDLHDVDKNEKELLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHAAF 844

Query: 484 KLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K +S IV R+ I+RD  RFHHF+ G CSC+DYW
Sbjct: 845 KFISDIVSREIIIRDINRFHHFRDGACSCRDYW 877



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/384 (29%), Positives = 177/384 (46%), Gaps = 36/384 (9%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE+      TV +N L+S YV N   S AV +FG+M   GV+ N     C++  C   
Sbjct: 157 VFDEA-GCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGS 215

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H + ++ G D D    N L+ MY K G +     +F +VPE  +++WNA I
Sbjct: 216 RDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFI 275

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SG   +G   H LEL  +MKS G+ P+  T   +L +CA  GA ++G ++   +      
Sbjct: 276 SGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANAD 335

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S+ ++   L++MYA+ G L  A+ +FD +P++ +V W A+I G         A+ LF  M
Sbjct: 336 SDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRM 395

Query: 241 LKSGIRPDGTAFVSVLSACS-----------HA---------------GLTDK-----GL 269
            K G   + T   +VL + +           HA               GL D       L
Sbjct: 396 RKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCL 455

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGA 326
            Y Y +  K+G       +T M+  L +     +A++L   ML   ++PD  V  +LL A
Sbjct: 456 NYAYRVFEKHG-SYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNA 514

Query: 327 CKIHKNVELAELAFGKVIKLEPMN 350
           C      E  +     +IK + M+
Sbjct: 515 CASLSAYEQGKQVHAHLIKRQFMS 538



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 157/332 (47%), Gaps = 2/332 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA ISG VL+     A+ L  +M+  G+  N  T+  +L  C   G   LG   H  
Sbjct: 269 VSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGF 328

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK   D D  +   L+ MY K G +D  +K+FD +P++ L+ WNA+ISG +        
Sbjct: 329 MVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEA 388

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+  M+  G   +  T   VL S A L A S   +V    +  GF S+  + N LI+ 
Sbjct: 389 LSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDS 448

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +C  L  A  +F+      ++++T++I       HGE A++LF EML+ G+ PD    
Sbjct: 449 YWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVL 508

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S+L+AC+     ++G +  +    K            +V    + G + +A +L  S L
Sbjct: 509 SSLLNACASLSAYEQG-KQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDA-DLAFSGL 566

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVI 344
            E     W A++G    H + + A   F +++
Sbjct: 567 PEKGVVSWSAMIGGLAQHGHGKRALDVFHRMV 598



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 126/267 (47%), Gaps = 10/267 (3%)

Query: 66  GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
           G   H   +K GL   F   N L++ Y KC      R++FD++P+   ++W+++++ Y+ 
Sbjct: 23  GAHIHAHLLKSGLFAVFR--NHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSN 80

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
           N +    L  +R M+S  V  +      VL      G    G ++     A G G + F+
Sbjct: 81  NAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAG---FGTQLHALAMATGLGGDIFV 137

Query: 186 NNALINMYARCGNLKKARAIFD--GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
            NAL+ MY   G + +AR +FD  G  R T VSW  ++  Y  +     AV++F EM+  
Sbjct: 138 ANALVAMYGGFGFVDEARMVFDEAGCERNT-VSWNGLMSAYVKNDRCSHAVKVFGEMVWG 196

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
           G++P+   F  V++AC+ +   + G +  + M  + G          +VD+  + G +  
Sbjct: 197 GVQPNEFGFSCVVNACTGSRDLEAGRK-VHAMVIRTGYDKDVFTANALVDMYSKLGDIRM 255

Query: 304 ALELIESMLVEPDGAVWGALLGACKIH 330
           A  ++   + E D   W A +  C +H
Sbjct: 256 A-AVVFGKVPETDVVSWNAFISGCVLH 281



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 84/203 (41%), Gaps = 7/203 (3%)

Query: 185 LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
             N L++ Y++C     AR +FD +P    VSW++++  Y  +     A+  F  M    
Sbjct: 39  FRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCS 98

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
           +R +      VL     AG   +     + +    GL         +V + G  G ++EA
Sbjct: 99  VRCNEFVLPVVLKCAPDAGFGTQ----LHALAMATGLGGDIFVANALVAMYGGFGFVDEA 154

Query: 305 LELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI--KLEPMNTGYYVLLSNIYS 362
             + +    E +   W  L+ A   +     A   FG+++   ++P   G+  ++ N  +
Sbjct: 155 RMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVV-NACT 213

Query: 363 EARNLDGIMRVRMMMRERRLKKD 385
            +R+L+   +V  M+      KD
Sbjct: 214 GSRDLEAGRKVHAMVIRTGYDKD 236


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/512 (40%), Positives = 308/512 (60%), Gaps = 10/512 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+ISGY       EA+ LF +M +  +  +  TM+ ++  C   G + LG   H  
Sbjct: 232 VSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSW 291

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               G   +  + N LM +Y KCG ++    LF+ +  K +I+WN +I GY    L    
Sbjct: 292 IDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEA 351

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVG----LEVEQQIQANGFGSNPFLNNA 188
           L L++EM   G  P+ VT + +L +CAHLGA  +G    + +++++++    S+  L  +
Sbjct: 352 LLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASS--LRTS 409

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           LI+MYA+CG+++ A  +F+ +  K++ SW A+I G+ +HG  + A  +F  M K GI PD
Sbjct: 410 LIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPD 469

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
              FV +LSACS +G+ D G   F  M   Y + P  EHY CM+DLLG +G   EA E+I
Sbjct: 470 DITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMI 529

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
            +M +EPDG +W +LL ACKI  NVEL E     +IK+EP N G YVLLSNIY+ A   +
Sbjct: 530 NNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWN 589

Query: 369 GIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE-- 426
            + ++R ++ ++ +KK PG S +E+   VH F++GD+ H +  EIY ML+++E L+++  
Sbjct: 590 EVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAG 649

Query: 427 --HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
              D ++   +   E        HSEKLAIAFG+I+T PGT++ ++KNLR+C +CH   K
Sbjct: 650 FVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATK 709

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           L+SKI  R+ I RD TRFHHF+ G CSC DYW
Sbjct: 710 LISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 122/389 (31%), Positives = 194/389 (49%), Gaps = 36/389 (9%)

Query: 4   ESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL 63
           E+I+  +L + +N +  G+ L+S    A+ L+  M   G+  NS T   LL  C      
Sbjct: 92  ETIQEPNLLI-WNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAF 150

Query: 64  WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRK-------------------- 103
             G   H   +K G DLD  V   L+++YV+ G ++  RK                    
Sbjct: 151 KEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGY 210

Query: 104 -----------LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFV 152
                      LFD++P K +++WNAMISGYA+ G     LEL++EM    + PD  T V
Sbjct: 211 ASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMV 270

Query: 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK 212
            V+S+CA  G+  +G +V   I  +GFGSN  + N+L+++Y++CG L+ A  +F+G+  K
Sbjct: 271 TVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYK 330

Query: 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-Y 271
            V+SW  +IGGY      + A+ LF EML+SG RP+    +S+L AC+H G  D G   +
Sbjct: 331 DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIH 390

Query: 272 FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHK 331
            Y  K            T ++D+  + G +  A ++  S+L     + W A++    +H 
Sbjct: 391 VYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSIL-HKSLSSWNAMIFGFAMHG 449

Query: 332 NVELAELAFGKV--IKLEPMNTGYYVLLS 358
             + A   F ++  I +EP +  +  LLS
Sbjct: 450 RADAAFDIFSRMRKIGIEPDDITFVGLLS 478



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 128/259 (49%), Gaps = 33/259 (12%)

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
           + Y   +F+ + E  L+ WN M  G+A +      L+LY  M SLG+ P++ TF  +L S
Sbjct: 84  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKS 143

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
           CA   A   G ++   +   G+  + F++ +LI++Y + G L+ AR +FD  P + VVS+
Sbjct: 144 CAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSY 203

Query: 218 TAIIGGYGIHGHGEVAVQLFD-------------------------------EMLKSGIR 246
           TA+I GY   G+ E A +LFD                               EM+K+ IR
Sbjct: 204 TALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIR 263

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           PD +  V+V+SAC+ +G  + G +  +   + +G     +    ++DL  + G+L  A  
Sbjct: 264 PDESTMVTVVSACAQSGSIELGRQ-VHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACG 322

Query: 307 LIESMLVEPDGAVWGALLG 325
           L E +L + D   W  L+G
Sbjct: 323 LFEGLLYK-DVISWNTLIG 340


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/506 (38%), Positives = 302/506 (59%), Gaps = 4/506 (0%)

Query: 15   YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
            +NA++ GY+++    +A+ L+  M+E G   + +T++           L  G   H + V
Sbjct: 1106 WNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVV 1165

Query: 75   KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
            K G +LD  V + ++ MY+KCG ++  R++F ++P    + W  MISG  +NG   H L 
Sbjct: 1166 KRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALF 1225

Query: 135  LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
             Y +M+   V PD  TF  ++ +C+ L A   G ++   I       +PF+  +L++MYA
Sbjct: 1226 TYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYA 1285

Query: 195  RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
            +CGN++ AR +F     + + SW A+I G   HG+ + A+Q F  M   G+ PD   F+ 
Sbjct: 1286 KCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIG 1345

Query: 255  VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
            VLSACSH+GL  +  E FY M+  YG++P  EHY+C+VD L RAG++ EA ++I SM  E
Sbjct: 1346 VLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFE 1405

Query: 315  PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
               +++  LL AC++  + E  +    K++ LEP ++  YVLLSN+Y+ A   + +   R
Sbjct: 1406 ASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASAR 1465

Query: 375  MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD 434
             MMR+  +KKDPG+S+V+LK +VHLF+ GDR+H +T  IY  ++ +   ++E      +D
Sbjct: 1466 NMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYVPDTD 1525

Query: 435  QKNSEEHLNDTE----VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIV 490
                +    D E     HSEKLAIA+G++ T P T + V+KNLR+CGDCH  IK +SK+ 
Sbjct: 1526 FALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHSAIKYISKVF 1585

Query: 491  DRQFIVRDATRFHHFKSGFCSCKDYW 516
             R+ ++RDA RFHHF++G CSC DYW
Sbjct: 1586 KREIVLRDANRFHHFRNGICSCGDYW 1611



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 165/349 (47%), Gaps = 7/349 (2%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
            + +N  +S ++      EAV  F  M    V  + +T + +L +      L LG   H I
Sbjct: 901  IVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGI 960

Query: 73   CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             ++ GLD   SVGNCL+ MYVK GSV   R +F Q+ E  LI+WN MISG   +GL    
Sbjct: 961  VMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECS 1020

Query: 133  LELYREMKSLGVCPDAVTFVGVLSSCAHL-GAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            + ++  +    + PD  T   VL +C+ L G + +  ++       G   + F++ ALI+
Sbjct: 1021 VGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALID 1080

Query: 192  MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
            +Y++ G +++A  +F       + SW AI+ GY + G    A++L+  M +SG R D   
Sbjct: 1081 VYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQIT 1140

Query: 252  FVSVLSACSHAGLTD-KGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
             V+   A    GL   K  +  + +  K G        + ++D+  + G++  A  +  S
Sbjct: 1141 LVNAAKAA--GGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVF-S 1197

Query: 311  MLVEPDGAVWGALLGACKIHKNVELAELAFG--KVIKLEPMNTGYYVLL 357
             +  PD   W  ++  C  +   E A   +   ++ K++P    +  L+
Sbjct: 1198 EIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLV 1246



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 159/339 (46%), Gaps = 14/339 (4%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPIC--VDPGYLWLGMCCH 70
            + +N +ISG  L+ L   +V +F  +    +  +  T+  +L  C  ++ GY +L    H
Sbjct: 1002 ISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGY-YLATQIH 1060

Query: 71   CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
               +K G+ LD  V   L+ +Y K G ++    LF       L +WNA++ GY  +G   
Sbjct: 1061 ACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFP 1120

Query: 131  HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA----NGFGSNPFLN 186
              L LY  M+  G   D +T V    +   L    VGL+  +QI A     GF  + F+ 
Sbjct: 1121 KALRLYILMQESGERSDQITLVNAAKAAGGL----VGLKQGKQIHAVVVKRGFNLDLFVT 1176

Query: 187  NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
            + +++MY +CG ++ AR +F  +P    V+WT +I G   +G  E A+  + +M  S ++
Sbjct: 1177 SGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQ 1236

Query: 247  PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
            PD   F +++ ACS     ++G +    +  K      P   T +VD+  + G + +A  
Sbjct: 1237 PDEYTFATLVKACSLLTALEQGRQIHANIV-KLNCAFDPFVMTSLVDMYAKCGNIEDARG 1295

Query: 307  LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345
            L +        A W A++     H N + A L F K +K
Sbjct: 1296 LFKRTNTRRI-ASWNAMIVGLAQHGNAKEA-LQFFKYMK 1332



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 131/276 (47%), Gaps = 6/276 (2%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
            V +  +ISG V N     A+  + +MR   V+ +  T   L+  C     L  G   H  
Sbjct: 1205 VAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHAN 1264

Query: 73   CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             VK     D  V   L+ MY KCG+++  R LF +   + + +WNAMI G AQ+G A   
Sbjct: 1265 IVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEA 1324

Query: 133  LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN--NALI 190
            L+ ++ MKS GV PD VTF+GVLS+C+H G  S   E    +Q N +G  P +   + L+
Sbjct: 1325 LQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKN-YGIEPEIEHYSCLV 1383

Query: 191  NMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
            +  +R G +++A  +   MP +   S +  ++    +    E   ++ +++L   + P  
Sbjct: 1384 DALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLL--ALEPSD 1441

Query: 250  TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
            +A   +LS    A    + +     M  K  ++  P
Sbjct: 1442 SAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDP 1477



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 93/189 (49%), Gaps = 3/189 (1%)

Query: 63  LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE--KGLITWNAMI 120
           L LG   H   +  G   D  V N L+TMY KCGS+   RKLFD  P+  + L+TWNA++
Sbjct: 672 LSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAIL 731

Query: 121 SGYAQNGLATHV-LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           S  A +   +H    L+R ++   V     T   V   C    + S    +       G 
Sbjct: 732 SALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGL 791

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             + F+  AL+N+YA+ G +++AR +FDGM  + VV W  ++  Y        A+ LF E
Sbjct: 792 QWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSE 851

Query: 240 MLKSGIRPD 248
             ++G RPD
Sbjct: 852 FHRTGFRPD 860



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 135/316 (42%), Gaps = 36/316 (11%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
            V +N ++  YV   L  EA+ LF +    G   + VT+  L  +                
Sbjct: 827  VLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVK-------------- 872

Query: 73   CVKFGLDL-DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
            C K  L+L  F      + MY   GS               +I WN  +S + Q G A  
Sbjct: 873  CKKNILELKQFKAYATKLFMYDDDGS--------------DVIVWNKALSRFLQRGEAWE 918

Query: 132  VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
             ++ + +M +  V  D +TFV +L+  A L    +G ++   +  +G      + N LIN
Sbjct: 919  AVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLIN 978

Query: 192  MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
            MY + G++ +AR++F  M    ++SW  +I G  + G  E +V +F  +L+  + PD   
Sbjct: 979  MYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFT 1038

Query: 252  FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
              SVL ACS            +    K G+       T ++D+  + G++ EA    E +
Sbjct: 1039 VASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEA----EFL 1094

Query: 312  LVEPDG---AVWGALL 324
             V  DG   A W A++
Sbjct: 1095 FVNQDGFDLASWNAIM 1110



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 130/330 (39%), Gaps = 30/330 (9%)

Query: 1    VFDESIKSTHLTVCYNALISGYVLNSLVS-EAVSLFGKMREQGVEINSVTMLCLLPICVD 59
            +FD +  +    V +NA++S    ++  S +   LF  +R   V     T+  +  +C+ 
Sbjct: 713  LFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLL 772

Query: 60   PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
                      H   VK GL  D  V   L+ +Y K G +   R LFD +  + ++ WN M
Sbjct: 773  SASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVM 832

Query: 120  ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
            +  Y    L    + L+ E    G  PD VT +  LS       + + L+     Q   +
Sbjct: 833  MKAYVDTCLEYEAMLLFSEFHRTGFRPDDVT-LRTLSRVVKCKKNILELK-----QFKAY 886

Query: 180  GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             +  F       MY   G+               V+ W   +  +   G    AV  F +
Sbjct: 887  ATKLF-------MYDDDGS--------------DVIVWNKALSRFLQRGEAWEAVDCFVD 925

Query: 240  MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
            M+ S +  DG  FV +L+  +     + G +  +G+  + GL        C++++  +AG
Sbjct: 926  MINSRVACDGLTFVVMLTVVAGLNCLELGKQ-IHGIVMRSGLDQVVSVGNCLINMYVKAG 984

Query: 300  QLNEALELIESMLVEPDGAVWGALLGACKI 329
             ++ A  +   M  E D   W  ++  C +
Sbjct: 985  SVSRARSVFGQM-NEVDLISWNTMISGCTL 1013


>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/516 (40%), Positives = 305/516 (59%), Gaps = 23/516 (4%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N+LI          +AV  + +M    +  ++ T   ++  C D   L +G   H    
Sbjct: 76  FNSLIKASSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKACADLSLLCIGTLVHSHVF 135

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             G   D  V   L+  Y K  +    RK+FD++P++ ++ WN+MISGY QNGLA   +E
Sbjct: 136 VSGYASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGLANEAVE 195

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           ++ +M+   V PD+ TFV VLS+C+ LG+   G  +   I  +G   N  L  +L+NM++
Sbjct: 196 VFNKMRESRVEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGSGITMNVVLATSLVNMFS 255

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           RCG++ +ARA+F  M    VV WTA+I GYG+HG+G  A+++F  M   G+ P+   FV+
Sbjct: 256 RCGDVGRARAVFYSMIEGNVVLWTAMISGYGMHGYGVEAMEVFHRMKARGVVPNSVTFVA 315

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV- 313
           VLSAC+HAGL D+G   F  MK +YG+ PG EH+ CMVD+ GR G LNEA + ++ +   
Sbjct: 316 VLSACAHAGLIDEGRSVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVKGLNSD 375

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
           E   AVW A+LGACK+HKN +L       +I  EP N G+YVLLSN+Y+ A  +D +  V
Sbjct: 376 ELVPAVWTAMLGACKMHKNFDLGVEVAENLINAEPENPGHYVLLSNMYALAGRMDRVESV 435

Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL------------- 420
           R +M +R LKK  GYS +++  R +LF +GD++H +T EIY  LD+L             
Sbjct: 436 RNVMIQRGLKKQVGYSTIDVDNRSYLFSMGDKSHPETNEIYCFLDELIWRCKDAGYAPVP 495

Query: 421 ENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCH 480
           E+ + E +G         EE       HSEKLA+AFG++ T  G  + ++KNLRIC DCH
Sbjct: 496 ESAMHELEG---------EEREYALRYHSEKLAVAFGLMKTGDGVTLRIVKNLRICEDCH 546

Query: 481 LFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
             IK +S +++R+ IVRD  RFHHF+ G CSC DYW
Sbjct: 547 SAIKFISAVMNREIIVRDKLRFHHFREGSCSCSDYW 582



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/247 (33%), Positives = 135/247 (54%), Gaps = 7/247 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  + +   V +N++ISGY  N L +EAV +F KMRE  VE +S T + +L  C   
Sbjct: 165 VFDEMPQRS--IVAWNSMISGYEQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQL 222

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  G   H   V  G+ ++  +   L+ M+ +CG V   R +F  + E  ++ W AMI
Sbjct: 223 GSLDFGCWLHDCIVGSGITMNVVLATSLVNMFSRCGDVGRARAVFYSMIEGNVVLWTAMI 282

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGY  +G     +E++  MK+ GV P++VTFV VLS+CAH G    G  V   ++   +G
Sbjct: 283 SGYGMHGYGVEAMEVFHRMKARGVVPNSVTFVAVLSACAHAGLIDEGRSVFASMKQE-YG 341

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMPRKTVVS--WTAIIGGYGIHGHGEVAVQL 236
             P + +   +++M+ R G L +A     G+    +V   WTA++G   +H + ++ V++
Sbjct: 342 VVPGVEHHVCMVDMFGRGGLLNEAYQFVKGLNSDELVPAVWTAMLGACKMHKNFDLGVEV 401

Query: 237 FDEMLKS 243
            + ++ +
Sbjct: 402 AENLINA 408



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 127/243 (52%), Gaps = 2/243 (0%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L+T+    GS+ Y R+LF  V +     +N++I   ++ G +   +  YR M    + P 
Sbjct: 48  LLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKASSKFGFSLDAVLFYRRMLLSRIVPS 107

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
             TF  V+ +CA L    +G  V   +  +G+ S+ F+  ALI  YA+    + AR +FD
Sbjct: 108 TYTFTSVIKACADLSLLCIGTLVHSHVFVSGYASDSFVQAALIAFYAKSCTPRVARKVFD 167

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            MP++++V+W ++I GY  +G    AV++F++M +S + PD   FVSVLSACS  G  D 
Sbjct: 168 EMPQRSIVAWNSMISGYEQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQLGSLDF 227

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           G  + +      G+       T +V++  R G +  A  +  SM +E +  +W A++   
Sbjct: 228 GC-WLHDCIVGSGITMNVVLATSLVNMFSRCGDVGRARAVFYSM-IEGNVVLWTAMISGY 285

Query: 328 KIH 330
            +H
Sbjct: 286 GMH 288


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/544 (37%), Positives = 329/544 (60%), Gaps = 43/544 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++I+G+V      +A+ LF KM  + V+ + VTM+ +L  C     L  G      
Sbjct: 200 VSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSY 259

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV------------------------ 108
             +  ++++ ++ N ++ MY KCGS++  ++LFD +                        
Sbjct: 260 IEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAA 319

Query: 109 -------PEKGLITWNAMISGYAQNGLATHVLELYREMK-SLGVCPDAVTFVGVLSSCAH 160
                  P+K ++ WNA+IS Y QNG     L ++ E++    +  + +T V  LS+CA 
Sbjct: 320 REVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQ 379

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           +GA  +G  +   I+ NG   N ++ +ALI+MY++CG+L+KAR +F+ + ++ V  W+A+
Sbjct: 380 VGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAM 439

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           IGG  +HG G  AV +F +M ++ ++P+G  F +V  ACSH GL D+    FY M++ YG
Sbjct: 440 IGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYG 499

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           + P  +HY C+VD+LGR+G L +A++ IE+M + P  +VWGALLGACKIH N+ LAE+A 
Sbjct: 500 IVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMAC 559

Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400
            ++++LEP N G +VLLSNIY+++   D +  +R  MR   LKK+PG S +E+ G +H F
Sbjct: 560 TRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMIHEF 619

Query: 401 MVGDRNHHQTVEIY----RMLDKLENLVQEHDGTKR----SDQKNSEEHLNDTEVHSEKL 452
           + GD  H  + ++Y     +++KL++   E + +       +++  E+ LN   +HSEKL
Sbjct: 620 LSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEEMKEQSLN---LHSEKL 676

Query: 453 AIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSC 512
           AI +G+I+T     I V+KNLR+CGDCH   KL+S++ +R+ IVRD  RFHHF++G CSC
Sbjct: 677 AICYGLISTEAPKAIRVIKNLRMCGDCHAVAKLISQLYNREIIVRDRYRFHHFRNGQCSC 736

Query: 513 KDYW 516
            D+W
Sbjct: 737 NDFW 740



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 168/364 (46%), Gaps = 38/364 (10%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM--REQGVEINSVTMLCLLPICV 58
           VFDE  +    T  +N LI  Y        ++  F  M   E     N  T   L+    
Sbjct: 87  VFDEIPQPNSFT--WNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAA 144

Query: 59  DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
           +   L LG   H + +K  +  D  V N L+  Y  CG +D   K+F  + EK +++WN+
Sbjct: 145 EVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNS 204

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           MI+G+ Q G     LEL+++M+S  V    VT VGVLS+CA +     G  V   I+ N 
Sbjct: 205 MINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENR 264

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFD------------------------------- 207
              N  L NA+++MY +CG+++ A+ +FD                               
Sbjct: 265 VNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLN 324

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM-LKSGIRPDGTAFVSVLSACSHAGLTD 266
            MP+K +V+W A+I  Y  +G    A+ +F E+ L+  I+ +    VS LSAC+  G  +
Sbjct: 325 AMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALE 384

Query: 267 KGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
            G  + +    K G++      + ++ +  + G L +A E+  S + + D  VW A++G 
Sbjct: 385 LG-RWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNS-VEKRDVFVWSAMIGG 442

Query: 327 CKIH 330
             +H
Sbjct: 443 LAMH 446



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 121/248 (48%), Gaps = 14/248 (5%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM-KSLGVC-PDAVTFVG 153
            S++Y RK+FD++P+    TWN +I  YA        +  + +M  S   C P+  TF  
Sbjct: 79  ASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPF 138

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
           ++ + A + + S+G  +      +  GS+ F+ N+LI+ Y  CG+L  A  +F  +  K 
Sbjct: 139 LIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKD 198

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEY-- 271
           VVSW ++I G+   G  + A++LF +M    ++      V VLSAC+      + LE+  
Sbjct: 199 VVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKI----RDLEFGR 254

Query: 272 ---FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACK 328
               Y  +N+  +     +   M+D+  + G + +A  L ++M  E D   W  +L    
Sbjct: 255 RVCSYIEENRVNVNLTLAN--AMLDMYTKCGSIEDAKRLFDAM-EEKDNVTWTTMLDGYA 311

Query: 329 IHKNVELA 336
           I ++ E A
Sbjct: 312 ISEDYEAA 319


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/509 (42%), Positives = 310/509 (60%), Gaps = 9/509 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCH--CI 72
           +N LI  Y        AV L+  M E GVE ++ T   +L  C     L  G   H    
Sbjct: 131 WNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREVHQRVS 190

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             ++G D+    G  ++ MY KCG VD  R +FD +  +  + WN+MI+ Y QNG     
Sbjct: 191 GTRWGQDVFVCAG--VVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEA 248

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L R+M + G+ P   T V  +S+ A   A   G E+       GFG    L  +L++M
Sbjct: 249 LALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQDKLKTSLVDM 308

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML-KSGIRPDGTA 251
           YA+ G ++ AR +F+ + ++ +VSW A+I GYG+HGH + A+ LF++M   + + PD   
Sbjct: 309 YAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALALFNKMKGDAQVTPDNIT 368

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           FV VLSAC+H G+ ++  E+FY M N Y ++P  +HYTC++D+LG  G+  EA +LI+ M
Sbjct: 369 FVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDLIKGM 428

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            +EPD  +WGALL  CKIHKNVEL ELA  K+I+LEP + G YV LSNIY+++   +   
Sbjct: 429 SIEPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVHLSNIYAQSGKWEKAA 488

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----H 427
           RVR +M  R LKK    S++ELKG+ H F+VGD +H ++ EIY  L++LE L+ +     
Sbjct: 489 RVRKLMTNRGLKKILACSWIELKGKTHGFLVGDASHPRSDEIYGELERLEGLMSDAGYVP 548

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           D        + +E  N    HSE+LAIAFG+I+T PGT+++V KNLR+C DCH+ IKL+S
Sbjct: 549 DIIPVFHNVDDDEKRNMVRSHSERLAIAFGLISTPPGTKLLVTKNLRVCEDCHVVIKLIS 608

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +IV R+ I+RD  R+HHF +G CSCKDYW
Sbjct: 609 QIVQREIIIRDVNRYHHFVNGECSCKDYW 637



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 159/310 (51%), Gaps = 7/310 (2%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           +L  CV  G L  G   H   +  GL  D  +   L+ +Y  CG V + R+LFD +P++ 
Sbjct: 68  ILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPKRN 127

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
           +  WN +I  YA+ G     + LYR M   GV PD  T+  VL +CA L     G EV Q
Sbjct: 128 VFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREVHQ 187

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
           ++    +G + F+   +++MYA+CG +  ARA+FDG+  +  V W ++I  YG +G    
Sbjct: 188 RVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRPME 247

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCM 291
           A+ L  +M  +GI P     VS +SA + A    +G E + +G +  +GLQ   +  T +
Sbjct: 248 ALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQ--DKLKTSL 305

Query: 292 VDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV---IKLEP 348
           VD+  ++G +  A  L E  L++ +   W A++    +H + + A   F K+    ++ P
Sbjct: 306 VDMYAKSGWVQVARVLFEQ-LMKRELVSWNAMICGYGMHGHADEALALFNKMKGDAQVTP 364

Query: 349 MNTGYYVLLS 358
            N  +  +LS
Sbjct: 365 DNITFVGVLS 374



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 127/276 (46%), Gaps = 16/276 (5%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +N++I+ Y  N    EA++L   M   G+     T++  +    D   L  G   H 
Sbjct: 229 AVVWNSMIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHG 288

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              + G  L   +   L+ MY K G V   R LF+Q+ ++ L++WNAMI GY  +G A  
Sbjct: 289 FGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADE 348

Query: 132 VLELYREMK-SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--A 188
            L L+ +MK    V PD +TFVGVLS+C H G      E    +  N +   P + +   
Sbjct: 349 ALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEF-FYLMVNAYSIKPTVQHYTC 407

Query: 189 LINMYARCGNLKKARAIFDGM---PRKTVVSWTAIIGGYGIHGH---GEVAVQLFDEMLK 242
           +I++    G  ++A  +  GM   P   +  W A++ G  IH +   GE+A+Q   E+  
Sbjct: 408 VIDVLGHTGRFEEAYDLIKGMSIEPDSGI--WGALLNGCKIHKNVELGELALQKLIELEP 465

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278
                D   +V + +  + +G  +K       M N+
Sbjct: 466 E----DAGNYVHLSNIYAQSGKWEKAARVRKLMTNR 497


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/589 (38%), Positives = 329/589 (55%), Gaps = 81/589 (13%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPIC-- 57
           VFDE I S   T  +N +I  Y+ +    E++SLF +MR Q  + I+S ++  ++  C  
Sbjct: 60  VFDE-IPSPD-TFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGR 117

Query: 58  -VDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTM------------------------- 91
             DPG    G   H   +K GL  D  V   L+ M                         
Sbjct: 118 LKDPGN---GQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPY 174

Query: 92  ------YVKCGSVDYGRKLFDQVPEKGLITWNAMISG----------------------- 122
                 YV+ G ++    LFD++PE+ L++WN MI G                       
Sbjct: 175 NVLLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLI 234

Query: 123 --------YAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
                   YA+   +   L L+ EM+   V PD VT V VLS+C  +GA  +G  + + I
Sbjct: 235 SWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECI 294

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
           + N    +  L  +L++MYA+CG++  +  +F+GM  + V +W+A+I G   HG GE+A+
Sbjct: 295 ERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELAL 354

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
             F +M+   I+P+   F+ VLSACSH GL D+G  YF  M   Y + P  EHY C+VD+
Sbjct: 355 DHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDI 414

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           LGRAG+L EA+ELI+SM   PD  VW ALLGAC+I+KNVE+AE A   +++LEP   G Y
Sbjct: 415 LGRAGRLQEAMELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNY 474

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
           VLLSNIYS+A+  D ++ VR MM+   ++K PG S +E+   VH F+ GD++H ++ +I 
Sbjct: 475 VLLSNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKIL 534

Query: 415 RMLDKLENLVQEHDGTKRS-------DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEI 467
           RML ++   ++ +     +       D+K  E  L     HSEKLAIAFG+++T+PG+ I
Sbjct: 535 RMLSEITARLKANGYAPLTASVLQDFDEKEKENALAH---HSEKLAIAFGLLSTAPGSTI 591

Query: 468 VVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            ++KNLR+C DCH+ IKL+S+   R+ IVRD  RFHHF +G CSCKDYW
Sbjct: 592 RIVKNLRVCDDCHIAIKLISRTYKRRIIVRDRNRFHHFVNGSCSCKDYW 640



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 141/357 (39%), Gaps = 70/357 (19%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVD---YGRKLFDQVPEKGLITWNAMISGYAQN 126
           H + +K  LD +  V   L+     C S +   Y R +FD++P      WN MI  Y  +
Sbjct: 23  HALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNTMIRAYLNS 82

Query: 127 GLATHVLELYREMKSLGVCP-DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
                 + L+ +M+     P D+ +   V+ +C  L     G ++  Q+   G GS+ F+
Sbjct: 83  QNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDLFV 142

Query: 186 NNALINMYARCGNLKKARAI-------------------------------FDGMPRKTV 214
             ALI MYA+ G+++ AR I                               FD MP + +
Sbjct: 143 ETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPERDL 202

Query: 215 VSWTAIIGGYGIHGHGEVAVQLFD-------------------------------EMLKS 243
           VSW  +I G+   G    A +LFD                               EM  +
Sbjct: 203 VSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLA 262

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
            + PD    VSVLSAC   G    G +  +    +  ++   +  T +VD+  + G ++ 
Sbjct: 263 NVLPDKVTMVSVLSACGDVGALGMG-KMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDN 321

Query: 304 ALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
           +L +   M    D   W A++     H   ELA   F K+I   ++P +  +  +LS
Sbjct: 322 SLRVFNGM-NNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLS 377


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/509 (41%), Positives = 307/509 (60%), Gaps = 7/509 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+ISGY  N L  +AV  +  M  +GV  + +T+  +L  C   G L  G+  H  
Sbjct: 363 VSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEF 422

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             + GL     V N L+ MY KC  +D   ++F ++P K +I+W ++I G   N  +   
Sbjct: 423 ADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEA 482

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L  +++M  L + P++VT V VLS+CA +GA S G E+       G G + FL NAL++M
Sbjct: 483 LFFFQQM-ILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDM 541

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y RCG ++ A   F+    K V SW  ++ GY   G G +AV+LF +M++S + PD   F
Sbjct: 542 YVRCGRMEPAWNQFNSC-EKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITF 600

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S+L ACS +G+   GLEYF  M++K+ + P  +HY  +VDLLGRAG+L +A E I+ M 
Sbjct: 601 TSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMP 660

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           ++PD A+WGALL AC+I++NVEL ELA   + +++  + GYY+LL N+Y+++   D + R
Sbjct: 661 IDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVAR 720

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR +MRE RL  DPG S+VE+ G+VH F+ GD  H Q  EI  +L+     ++    +  
Sbjct: 721 VRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSMS 780

Query: 433 SDQKNSEEHLNDTEV---HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKI 489
            D +  +   +  E+   HSE+LAIAFG+INT PGT I V KNL +C +CH  +K +SK+
Sbjct: 781 KDSRRDDIDASKAEIFCGHSERLAIAFGLINTVPGTPIWVTKNLYMCENCHNTVKFISKV 840

Query: 490 VDRQFIVRDATRFHHFKSGFCSCKD--YW 516
           V R   VRD  +FHHFK G CSC D  YW
Sbjct: 841 VRRGISVRDTEQFHHFKDGVCSCGDEGYW 869



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/347 (32%), Positives = 180/347 (51%), Gaps = 7/347 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N L+ GY       EA++L+ +M   G+  +  T  C+L  C     L  G   H   +
Sbjct: 163 WNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVI 222

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           ++G + D  V N L+TMYVKCG +   R +FD++P +  I+WNAMISGY +N +    L 
Sbjct: 223 RYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLR 282

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+  M+   V PD +T   V+S+C  LG   +G EV   +   GF +   +NN+LI M++
Sbjct: 283 LFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHS 342

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
             G   +A  +F  M  K +VSWTA+I GY  +G  E AV+ +  M   G+ PD     S
Sbjct: 343 SVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIAS 402

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VLSAC+  GL DKG+   +   ++ GL         ++D+  +   +++ALE+   +   
Sbjct: 403 VLSACAGLGLLDKGI-MLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRI--- 458

Query: 315 PDGAV--WGALLGACKIHKNVELAELAFGKVI-KLEPMNTGYYVLLS 358
           P+  V  W +++   +++     A   F ++I  L+P +     +LS
Sbjct: 459 PNKNVISWTSIILGLRLNYRSFEALFFFQQMILSLKPNSVTLVSVLS 505



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 126/400 (31%), Positives = 191/400 (47%), Gaps = 10/400 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD   +   ++  +NA+ISGY  N +  E + LF  MRE  V+ + +TM  ++  C   
Sbjct: 252 VFDRMPRRDRIS--WNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEAL 309

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G   LG   H   +K G   + SV N L+ M+   G  D    +F ++  K L++W AMI
Sbjct: 310 GDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMI 369

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGY +NGL    +E Y  M+  GV PD +T   VLS+CA LG    G+ + +     G  
Sbjct: 370 SGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLT 429

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S   + N+LI+MY++C  + KA  +F  +P K V+SWT+II G  ++     A+  F +M
Sbjct: 430 SYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQM 489

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           + S ++P+    VSVLSAC+  G    G E  +    + GL         ++D+  R G+
Sbjct: 490 ILS-LKPNSVTLVSVLSACARIGALSCGKE-IHAHALRTGLGFDGFLPNALLDMYVRCGR 547

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
           +  A     S   E D A W  LL          LA   F K+I+  + P    +  LL 
Sbjct: 548 MEPAWNQFNS--CEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLC 605

Query: 359 NIYSEARNLDGIMRVRMMMRERRLKKDPGY--SYVELKGR 396
                    DG+     M  +  +  +  +  S V+L GR
Sbjct: 606 ACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGR 645



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 147/310 (47%), Gaps = 2/310 (0%)

Query: 16  NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVK 75
           N+LI    L   + +A+     M+E  V +   T + LL +C        G   H    K
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122

Query: 76  FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLEL 135
               L   +GN L++M+V+ G +     +F ++ E+ L +WN ++ GYA+ G     L L
Sbjct: 123 TVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNL 182

Query: 136 YREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR 195
           Y  M  +G+ PD  TF  VL +C  L   + G EV   +   GF S+  + NALI MY +
Sbjct: 183 YHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVK 242

Query: 196 CGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSV 255
           CG++  AR +FD MPR+  +SW A+I GY  +      ++LF  M +  + PD     SV
Sbjct: 243 CGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSV 302

Query: 256 LSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEP 315
           +SAC   G    G E  +G   K G          ++ +    G  +EA E++ S +   
Sbjct: 303 ISACEALGDERLGRE-VHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEA-EMVFSKMEFK 360

Query: 316 DGAVWGALLG 325
           D   W A++ 
Sbjct: 361 DLVSWTAMIS 370


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/522 (42%), Positives = 309/522 (59%), Gaps = 17/522 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +     + +  +ISGYV N  V  A  LF  M E+  E++   ML         
Sbjct: 193 LFDEMPRRN--VISWTTMISGYVQNGQVDVARKLFEVMPEKN-EVSWTAMLM-------- 241

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVG-NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
           GY   G       +   + +   V  N ++  + + G V   R++FDQ+ EK   TW+AM
Sbjct: 242 GYTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAM 301

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I  Y + G     L L+  M+  GV  +  + + VLS CA L +   G +V  ++  + F
Sbjct: 302 IKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQF 361

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            S+ F+ + LI MY +CG+L KAR IFD    K +V W +II GY  HG  E A+Q+F E
Sbjct: 362 DSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHE 421

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M  SG+  DG  FV VLSACS+ G   +GLE F  MK+KY ++P  EHY CMVDLLGRAG
Sbjct: 422 MCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAG 481

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
            +N+A++LI+ M VE D  +WGALLGAC+ H N+ LAE+A  K+++LEP N G Y+LLSN
Sbjct: 482 LVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSN 541

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVG-DRNHHQTVEIYRMLD 418
           IY+       +  +R  MR +++ K PG S++E++ RVH+F  G    H +   I +ML+
Sbjct: 542 IYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVHMFTGGVSTKHPELSSIMKMLE 601

Query: 419 KLENLVQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLR 474
           KL+ +++E     D +      + EE +     HSE+LA+AFG++    G  I VMKNLR
Sbjct: 602 KLDGMLREAGYYPDSSFVLHDVDEEEKVRSLGHHSERLAVAFGLLKVPEGMPIRVMKNLR 661

Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +CGDCH  IKL++KI  R+ I+RDA RFHHFK GFCSC+DYW
Sbjct: 662 VCGDCHSAIKLIAKITGREIILRDANRFHHFKDGFCSCRDYW 703



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 161/363 (44%), Gaps = 70/363 (19%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE        V +N++++GY  N+   EA  LF KM E+    N+V+           
Sbjct: 38  VFDEMPDKG--IVSWNSMVAGYFQNNRPREARYLFDKMPER----NTVS----------- 80

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
              W                     N L++ YVK   V   RK FD +PE+ +++W AM+
Sbjct: 81  ---W---------------------NGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMV 116

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG-F 179
            GY Q GL +    L+ +M    V    V   G++             +V +  +A G F
Sbjct: 117 RGYVQEGLVSEAETLFWQMPEKNVVSWTVMLGGLI-------------QVRRIDEARGLF 163

Query: 180 GSNPFLN----NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQ 235
              P  +      +I+ Y + G L +AR +FD MPR+ V+SWT +I GY  +G  +VA +
Sbjct: 164 DIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARK 223

Query: 236 LFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295
           LF+ M +     +  ++ ++L   +  G  ++  E F  M  K  +         M+   
Sbjct: 224 LFEVMPEK----NEVSWTAMLMGYTQGGRIEEASELFDAMPVKAVVA-----CNAMILGF 274

Query: 296 GRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV 355
           G+ G++ +A ++ +  + E D   W A++   +  K  E+  L    +++ E + + +  
Sbjct: 275 GQNGEVAKARQVFDQ-IREKDDGTWSAMIKVYE-RKGFEVEALNLFALMQREGVQSNFPS 332

Query: 356 LLS 358
           L+S
Sbjct: 333 LIS 335



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 121/288 (42%), Gaps = 45/288 (15%)

Query: 65  LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYA 124
           L M C   C    +       N  +  Y + G ++  R++FD++P+KG+++WN+M++GY 
Sbjct: 4   LLMPCRRYCTSVAIAY-----NSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYF 58

Query: 125 QNGLATHVLELYREM-------------------------KSLGVCPD--AVTFVGVLSS 157
           QN        L+ +M                         K+    P+   V++  ++  
Sbjct: 59  QNNRPREARYLFDKMPERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRG 118

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
               G  S    +  Q+      S   +   LI +      + +AR +FD MP K VV+ 
Sbjct: 119 YVQEGLVSEAETLFWQMPEKNVVSWTVMLGGLIQVR----RIDEARGLFDIMPVKDVVAR 174

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
           T +I GY   G    A +LFDEM +  +     ++ +++S     G  D   + F  M  
Sbjct: 175 TNMISGYCQEGRLAEARELFDEMPRRNV----ISWTTMISGYVQNGQVDVARKLFEVMPE 230

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           K  +      +T M+    + G++ EA EL ++M V+   A    +LG
Sbjct: 231 KNEVS-----WTAMLMGYTQGGRIEEASELFDAMPVKAVVACNAMILG 273


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/520 (40%), Positives = 303/520 (58%), Gaps = 6/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  +     V +N L+ G   +    EA+ L  +M   G + +S T+  +LPI  + 
Sbjct: 129 VFDEMPEKD--VVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEG 186

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             +  GM  H    + G   D  VG+ L+ MY  C   DY  K+FD +P +  I WN+M+
Sbjct: 187 ADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSML 246

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +G AQNG     L L+R M   G+ P  VTF  ++ +C +L +  +G ++   +   GF 
Sbjct: 247 AGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFD 306

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            N F++++LI+MY +CGN+  AR IFD +    +VSWTA+I G+ +HG    A+ LFD M
Sbjct: 307 GNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRM 366

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
               ++P+   F++VL+ACSHAGL DKG +YF  M + YG+ P  EH+  + D LGR G+
Sbjct: 367 ELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGK 426

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L EA   I  M ++P  +VW  LL ACK+HKN  LAE    K+  LEP + G +++LSN 
Sbjct: 427 LEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSHIILSNT 486

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           YS +   +    +R  MR++ ++K+P  S++E+K + H+F+  D++H     I   L+  
Sbjct: 487 YSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQHVFVAHDKSHPWYERIIDALNVF 546

Query: 421 -ENLVQEHDGTKRSD--QKNSEEHLNDTEV-HSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
            E +V++       D  Q   EE  N     HSEKLAI FGII+T PGT I VMKNLR+C
Sbjct: 547 SEQMVRQGYVPNTDDVFQDIEEEQKNSVLCGHSEKLAIVFGIISTPPGTTIRVMKNLRVC 606

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DCH   K +SKIV R+ ++RDA RFHHFK G CSC D+W
Sbjct: 607 VDCHTVTKFISKIVGREIVMRDANRFHHFKDGICSCGDFW 646



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 159/348 (45%), Gaps = 22/348 (6%)

Query: 31  AVSLFGKMREQGVEINSVTMLCLLP----ICVDPGYLWLGMCCHCICVKFGLDLDFSVGN 86
           A++LF +MR         ++L  LP     C   G   LG   H + ++ G   D    N
Sbjct: 38  AIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASLHALALRSGAFADRFAAN 97

Query: 87  CLMTMYVKCGS--------------VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            L+ +Y K  +              ++  RK+FD++PEK +++WN ++ G A++G     
Sbjct: 98  ALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEA 157

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L REM   G  PD+ T   VL   A       G+E+      NGF  + F+ ++LI+M
Sbjct: 158 LGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDM 217

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA C     +  +FD +P +  + W +++ G   +G  + A+ LF  ML SGI+P    F
Sbjct: 218 YANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTF 277

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S++ AC +      G +  +    + G        + ++D+  + G ++ A  + +  +
Sbjct: 278 SSLIPACGNLASLLLG-KQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDR-I 335

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVI--KLEPMNTGYYVLLS 358
             PD   W A++    +H     A + F ++    L+P +  +  +L+
Sbjct: 336 QSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLT 383


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/512 (40%), Positives = 322/512 (62%), Gaps = 10/512 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++I+ Y  N     A+  F +M   G+  + +T++ L  I        +G   H  
Sbjct: 315 VSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGF 374

Query: 73  CVK-FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
            V+   L++D  +GN L+ MY K GS+D  R +F+Q+P + +I+WN +I+GYAQNGLA+ 
Sbjct: 375 VVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASE 434

Query: 132 VLELYREMKS-LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
            ++ Y  M+    + P+  T+V +L + +H+GA   G+++  ++  N    + F+   LI
Sbjct: 435 AIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLI 494

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MY +CG L+ A ++F  +P++T V W AII   GIHGHGE A+QLF +M   G++ D  
Sbjct: 495 DMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHI 554

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            FVS+LSACSH+GL D+    F  M+ +Y ++P  +HY CMVDL GRAG L +A  L+ +
Sbjct: 555 TFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSN 614

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M ++ D ++WG LL AC+IH N EL   A  ++++++  N GYYVLLSNIY+     +G 
Sbjct: 615 MPIQADASIWGTLLAACRIHGNAELGTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGA 674

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY---RMLD-KLENL--V 424
           ++VR + R+R L+K PG+S V +   V +F  G+++H Q  EIY   R+L+ K+++L  V
Sbjct: 675 VKVRSLARDRGLRKTPGWSSVVVGSVVEVFYAGNQSHPQCAEIYEELRVLNAKMKSLGYV 734

Query: 425 QEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
            ++    +  +++ +E +  +  HSE+LAI FGII+T P + I + KNLR+CGDCH   K
Sbjct: 735 PDYSFVLQDVEEDEKEEILTS--HSERLAIVFGIISTPPKSPIRIFKNLRVCGDCHNATK 792

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +SKI +R+ IVRD+ RFHHFK G CSC DYW
Sbjct: 793 YISKITEREIIVRDSNRFHHFKDGICSCGDYW 824



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 179/325 (55%), Gaps = 6/325 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NA+ISG+  N  V+EA+ +  +M+ + V++++VT+  +LPIC     +  G+  H   +
Sbjct: 216 WNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVI 275

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K GL+ D  V N L+ MY K G +   +++FD +  + L++WN++I+ Y QN      L 
Sbjct: 276 KHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALG 335

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ-QIQANGFGSNPFLNNALINMY 193
            ++EM  +G+ PD +T V + S    L    +G  V    ++      +  + NAL+NMY
Sbjct: 336 FFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMY 395

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG--IRPDGTA 251
           A+ G++  ARA+F+ +P + V+SW  +I GY  +G    A+  ++ M++ G  I P+   
Sbjct: 396 AKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYN-MMEEGRTIVPNQGT 454

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           +VS+L A SH G   +G++  +G   K  L       TC++D+ G+ G+L +A+ L   +
Sbjct: 455 WVSILPAYSHVGALQQGMK-IHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEI 513

Query: 312 LVEPDGAVWGALLGACKIHKNVELA 336
             E     W A++ +  IH + E A
Sbjct: 514 PQET-SVPWNAIISSLGIHGHGEKA 537



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 127/244 (52%), Gaps = 4/244 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +N+++S YV      +++    ++    GV  +  T   +L  C+    L  G   HC  
Sbjct: 117 WNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLS---LADGEKMHCWV 173

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           +K G + D  V   L+ +Y + G+V+   K+F  +P + + +WNAMISG+ QNG     L
Sbjct: 174 LKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEAL 233

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
            +   MK+  V  D VT   +L  CA       G+ V   +  +G  S+ F++NALINMY
Sbjct: 234 RVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMY 293

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
           ++ G L+ A+ +FDGM  + +VSW +II  Y  +     A+  F EML  G+RPD    V
Sbjct: 294 SKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVV 353

Query: 254 SVLS 257
           S+ S
Sbjct: 354 SLAS 357



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 126/259 (48%), Gaps = 8/259 (3%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H + +  G   D  +   L+T+Y   G +      F  +  K + +WN+M+S Y + G  
Sbjct: 71  HALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVRRGRY 130

Query: 130 THVLELYREMKSL-GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
              ++   E+ SL GV PD  TF  VL +C  L     G ++   +   GF  + ++  +
Sbjct: 131 RDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---GEKMHCWVLKMGFEHDVYVAAS 187

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           LI++Y+R G ++ A  +F  MP + V SW A+I G+  +G+   A+++ D M    ++ D
Sbjct: 188 LIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMD 247

Query: 249 GTAFVSVLSACSHAGLTDKG-LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
                S+L  C+ +     G L + Y +  K+GL+        ++++  + G+L +A  +
Sbjct: 248 TVTVSSMLPICAQSNDVVGGVLVHLYVI--KHGLESDVFVSNALINMYSKFGRLQDAQRV 305

Query: 308 IESMLVEPDGAVWGALLGA 326
            + M V  D   W +++ A
Sbjct: 306 FDGMEVR-DLVSWNSIIAA 323


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/539 (39%), Positives = 313/539 (58%), Gaps = 35/539 (6%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++ALISGY  N +  EA+ +F +M   G+ ++ V ++ +L  C     +  G   H +
Sbjct: 270 VSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGL 329

Query: 73  CVKFGLDLDFSVGNCLMTMY-------------------------------VKCGSVDYG 101
            ++ G++   ++ N L+ MY                               +KCGSV+  
Sbjct: 330 VIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKA 389

Query: 102 RKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL 161
           R LFD +PEK +++W+A+ISGYAQ+   +  L L+ EM+   + PD    V V+S+C HL
Sbjct: 390 RALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHL 449

Query: 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
            A   G  V   I+ NG   N  L   L++MY +CG ++ A  +F+GM  K V SW A+I
Sbjct: 450 AALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALI 509

Query: 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281
            G  ++G  E ++ +F EM  +G+ P+   F+ VL AC H GL D+G  +F  M  K+G+
Sbjct: 510 IGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGI 569

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG 341
           +P  +HY CMVDLLGRAG LNEA +LIESM + PD A WGALLGACK H + E+ E    
Sbjct: 570 EPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGR 629

Query: 342 KVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFM 401
           K+I+L+P + G++VLLSNI++   + + ++ VR MM+++ + K PG S +E  G VH F+
Sbjct: 630 KLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFL 689

Query: 402 VGDRNHHQTVEIYRMLDKLENLVQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFG 457
            GD+ H    ++  ML+++   ++      D  + S   + EE       HSEKLAIAFG
Sbjct: 690 AGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSEKLAIAFG 749

Query: 458 IINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           ++  SP T I +MKNLRIC DCH   KL+SK   R+ +VRD  RFH+FK G CSC DYW
Sbjct: 750 LLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDYW 808



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 112/365 (30%), Positives = 171/365 (46%), Gaps = 74/365 (20%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDES      +V +N++++GYV    V EA  +F +M ++ + + S +M+ LL      
Sbjct: 198 LFDES--PVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNI-VASNSMIVLLG----- 249

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
                                            K G V    KLF+++ EK +++W+A+I
Sbjct: 250 ---------------------------------KMGQVMEAWKLFNEMDEKDMVSWSALI 276

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGY QNG+    L ++ EM + G+  D V  V VLS+CAHL     G  +   +   G  
Sbjct: 277 SGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIE 336

Query: 181 SNPFLNNALINMYA-------------------------------RCGNLKKARAIFDGM 209
           S   L NALI+MY+                               +CG+++KARA+FD M
Sbjct: 337 SYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVM 396

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
           P K +VSW+A+I GY  H      + LF EM    IRPD T  VSV+SAC+H    D+G 
Sbjct: 397 PEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQG- 455

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
           ++ +    K GL+      T ++D+  + G +  ALE+   M  E   + W AL+    +
Sbjct: 456 KWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGM-EEKGVSSWNALIIGLAV 514

Query: 330 HKNVE 334
           +  VE
Sbjct: 515 NGLVE 519



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 128/305 (41%), Gaps = 64/305 (20%)

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
           +DY  ++FD++       WN M+  Y Q+  A   L LY+ M    V PD  T+  V+ +
Sbjct: 91  LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA 150

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARA------------- 204
           CA       G E+   +   GF S+ ++ N LINMYA CGN++ AR              
Sbjct: 151 CAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSW 210

Query: 205 ------------------IFDGMPRKTVV------------------------------- 215
                             IFD MP++ +V                               
Sbjct: 211 NSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMV 270

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           SW+A+I GY  +G  E A+ +F EM  +G+R D    VSVLSAC+H  +   G +  +G+
Sbjct: 271 SWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTG-KMIHGL 329

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVEL 335
             + G++        ++ +   +G++ +A +L        D   W +++  C    +VE 
Sbjct: 330 VIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSH-NLDQISWNSMISGCMKCGSVEK 388

Query: 336 AELAF 340
           A   F
Sbjct: 389 ARALF 393


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/506 (40%), Positives = 306/506 (60%), Gaps = 4/506 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NALI G+  N    +A+ L  +M   G + +  T+  LL  C     L  G   H   +
Sbjct: 419 WNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVL 478

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           + GL+ DF VG  L++ Y+ CG     R LFD++ +K L++WNAMISGY+QNGL    L 
Sbjct: 479 RNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLA 538

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+R+  S G+    +  V V  +C+ L A  +G E    +       + F+  ++I+MYA
Sbjct: 539 LFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYA 598

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           + G +K++R +FDG+  K V SW AII  +GIHGHG+ A++L++ M K G  PD   ++ 
Sbjct: 599 KSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIG 658

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           +L AC HAGL ++GL+YF  M+N   ++P  EHY C++D+L RAG+L++AL L+  M  E
Sbjct: 659 ILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEE 718

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
            D  +W +LL +C+    +E+ E    K+++LEP     YVLLSN+Y+     DG+ RVR
Sbjct: 719 ADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAENYVLLSNLYAGLGKWDGVRRVR 778

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----HDGT 430
            MM+E  L+KD G S++E+ GRV+ F+VGD    ++ EI  +  +LE  + E     + +
Sbjct: 779 QMMKEIGLQKDAGCSWIEVGGRVYSFVVGDSLQPKSAEIRVIWRRLEERISEIGYKPNTS 838

Query: 431 KRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIV 490
               +   EE ++    HSEKLAI+FG++ T+ GT + + KNLRIC DCH   KL+SK V
Sbjct: 839 SVLHEVGEEEKIDILRGHSEKLAISFGLLKTTKGTTLRIYKNLRICADCHNAAKLISKAV 898

Query: 491 DRQFIVRDATRFHHFKSGFCSCKDYW 516
           +R+ +VRD  RFHHF+ G CSC DYW
Sbjct: 899 EREIVVRDNKRFHHFRDGLCSCCDYW 924



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/323 (32%), Positives = 164/323 (50%), Gaps = 9/323 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEI--NSVTMLCLLPICVDPGYLWLGMCC 69
            V +N +IS + L   V+EA +L  +M+ QG E+  N VT+L +LP C+D   L      
Sbjct: 314 VVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKEL 373

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H    +        + N  +  Y KCG+++   K+F  + +K + +WNA+I G+AQNG  
Sbjct: 374 HGYSFRHCFQ-HVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDP 432

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              L L  +M   G  PD  T   +L +CAHL +   G E+   +  NG  ++ F+  +L
Sbjct: 433 RKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSL 492

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++ Y  CG    AR +FD M  K +VSW A+I GY  +G    ++ LF + L  GI+   
Sbjct: 493 LSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHE 552

Query: 250 TAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTC-MVDLLGRAGQLNEALEL 307
            A VSV  ACS       G E + Y +K    LQ       C ++D+  ++G + E+ ++
Sbjct: 553 IAIVSVFGACSQLSALRLGKEAHGYVLK---ALQTEDAFVGCSIIDMYAKSGCIKESRKV 609

Query: 308 IESMLVEPDGAVWGALLGACKIH 330
            +  L + + A W A++ A  IH
Sbjct: 610 FDG-LKDKNVASWNAIIVAHGIH 631



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 161/329 (48%), Gaps = 9/329 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVD 59
           VFD     T   + +NAL+SGY  N L  + V +F  +  +   + ++ T   ++  C  
Sbjct: 101 VFDN--METKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGG 158

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              + LG   H + +K GL LD  VGN L+ MY KCG+VD   K+FD +PE  L++WN+M
Sbjct: 159 ILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSM 218

Query: 120 ISGYAQNGLATHVLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           I  +++NG +    +L  EM    G+ PD VT V +L  CA  G   +G+ +       G
Sbjct: 219 ICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLG 278

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
                 +NNA++ MY++CG L +A+  F     K VVSW  +I  + + G    A  L  
Sbjct: 279 LSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQ 338

Query: 239 EMLKSG--IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           EM   G  ++ +    ++VL AC    L  + L+  +G   ++  Q   E     +    
Sbjct: 339 EMQIQGEEMKANEVTILNVLPACLDK-LQLRSLKELHGYSFRHCFQH-VELSNAFILAYA 396

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLG 325
           + G LN A E +   + +   + W AL+G
Sbjct: 397 KCGALNSA-EKVFHGIGDKTVSSWNALIG 424



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 117/226 (51%), Gaps = 3/226 (1%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140
           D+ +   L+ MY  CGS    R +FD +  K LI WNA++SGY +NGL   V++++ ++ 
Sbjct: 78  DYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLV 137

Query: 141 S-LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNL 199
           S     PD  TF  V+ +C  +    +G  +   +   G   + F+ NAL+ MY +CG +
Sbjct: 138 SDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAV 197

Query: 200 KKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML-KSGIRPDGTAFVSVLSA 258
            +A  +FD MP   +VSW ++I  +  +G    +  L  EML + G+ PD    V++L  
Sbjct: 198 DEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPV 257

Query: 259 CSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
           C+  G  D G+   +G+  K GL         MV +  + G LNEA
Sbjct: 258 CAGEGEVDIGMG-IHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEA 302



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 136/273 (49%), Gaps = 6/273 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+ISGY  N L  E+++LF K   +G++ + + ++ +   C     L LG   H  
Sbjct: 518 VSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGY 577

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K     D  VG  ++ MY K G +   RK+FD + +K + +WNA+I  +  +G     
Sbjct: 578 VLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEA 637

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA-LIN 191
           +ELY  MK +G  PD  T++G+L +C H G    GL+  +++Q          + A LI+
Sbjct: 638 IELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLID 697

Query: 192 MYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           M AR G L  A  + + MP +     W++++      G  E+  ++  ++L+  + PD  
Sbjct: 698 MLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLE--LEPDKA 755

Query: 251 AFVSVLSACSHAGLTD-KGLEYFYGMKNKYGLQ 282
               +LS   +AGL    G+     M  + GLQ
Sbjct: 756 ENYVLLSNL-YAGLGKWDGVRRVRQMMKEIGLQ 787


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/521 (40%), Positives = 315/521 (60%), Gaps = 7/521 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVD 59
           +FDE  +  + +  +NA ISGYV ++   EA+ LF  M R +    N  T+   L     
Sbjct: 175 LFDEMPQRDNFS--WNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAA 232

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              L LG   H   ++  L+LD  V + L+ +Y KCGS+D  R +FDQ+ ++ +++W  M
Sbjct: 233 IPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTM 292

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I    ++G       L+R++   GV P+  TF GVL++CA   A  +G EV   +   G+
Sbjct: 293 IHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGY 352

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
               F  +AL++MY++CGN + AR +F+ M +  +VSWT++I GY  +G  + A+  F+ 
Sbjct: 353 DPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFEL 412

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           +L+SG +PD   +V VLSAC+HAGL DKGLEYF+ +K K+GL    +HY C++DLL R+G
Sbjct: 413 LLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSG 472

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
           +  EA  +I++M V+PD  +W +LLG C+IH N+ELA+ A   + ++EP N   Y+ L+N
Sbjct: 473 RFKEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPENPATYITLAN 532

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
           IY+ A     +  VR  M    + K PG S++E+K +VH+F+VGD +H +T +I+  L +
Sbjct: 533 IYANAGLWSEVANVRKDMDNMGIVKKPGKSWIEIKRQVHVFLVGDTSHPKTSDIHEFLGE 592

Query: 420 LENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRI 475
           L   ++E      ++        E+   +   HSEKLA+ FGII+T PGT I V KNLR 
Sbjct: 593 LSKKIKEEGYVPDTNFVLHDVEEEQKEQNLVYHSEKLAVVFGIISTPPGTPIKVFKNLRT 652

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           C DCH  IK +SKIV R+  VRD+ RFH F+ G CSCKDYW
Sbjct: 653 CVDCHTAIKYISKIVQRKITVRDSNRFHCFEDGSCSCKDYW 693



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 120/245 (48%), Gaps = 3/245 (1%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM- 139
           D    N ++  Y K G ++  RKLFD++P++   +WNA ISGY  +      LEL+R M 
Sbjct: 152 DLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQ 211

Query: 140 KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNL 199
           +      +  T    L++ A +    +G E+   +       +  + +AL+++Y +CG+L
Sbjct: 212 RHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSL 271

Query: 200 KKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC 259
            +AR IFD M  + VVSWT +I      G  E    LF ++++SG+RP+   F  VL+AC
Sbjct: 272 DEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNAC 331

Query: 260 SHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAV 319
           +       G E  +G     G  PG    + +V +  + G    A  +   M  +PD   
Sbjct: 332 ADHAAEHLGKE-VHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMH-QPDLVS 389

Query: 320 WGALL 324
           W +L+
Sbjct: 390 WTSLI 394



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 97/217 (44%), Gaps = 40/217 (18%)

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P A  +  ++++C    A  +G  V    +A+ F    F++N L++MYA+CG+L  A+ +
Sbjct: 85  PSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQML 144

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           FD M  + + SW  +I GY   G  E A +LFDEM +     D  ++ + +S        
Sbjct: 145 FDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQR----DNFSWNAAISGYVTHNQP 200

Query: 266 DKGLEYFYGMK-------NKYG-------------LQPGPE-H--------------YTC 290
            + LE F  M+       NK+              L+ G E H              ++ 
Sbjct: 201 REALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSA 260

Query: 291 MVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           ++DL G+ G L+EA  + + M  + D   W  ++  C
Sbjct: 261 LLDLYGKCGSLDEARGIFDQM-KDRDVVSWTTMIHRC 296


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/550 (38%), Positives = 315/550 (57%), Gaps = 41/550 (7%)

Query: 3   DESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGY 62
           DE++K     V YNA+ISGYV   L  EA+ +  +M   G+E++  T   ++  C +   
Sbjct: 246 DENMK----LVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARL 301

Query: 63  LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISG 122
           L LG   H   ++   D  F   N L+T+Y KCG  +  R +F+++P K L++WNA++SG
Sbjct: 302 LQLGKQVHAYVLRRE-DFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSG 360

Query: 123 Y-------------------------------AQNGLATHVLELYREMKSLGVCPDAVTF 151
           Y                               A+NG     L+L+  MK  G  P    F
Sbjct: 361 YVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAF 420

Query: 152 VGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR 211
            G + SCA LGA+  G +   Q+   GF S+    NALI MYA+CG +++A+ +F  MP 
Sbjct: 421 SGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPC 480

Query: 212 KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEY 271
              VSW A+I   G HGHG  AV +++EMLK GIRPD   F++VL+ACSHAGL D+G +Y
Sbjct: 481 LDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKY 540

Query: 272 FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHK 331
           F  M+  Y + PG +HY  ++DLL R+G+ +EA  +IES+  +P   +W ALL  C++H 
Sbjct: 541 FNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHG 600

Query: 332 NVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYV 391
           N+EL  +A  K+  L P + G Y+LLSN+Y+     + + RVR +MR+R +KK+   S++
Sbjct: 601 NMELGIIAADKLFGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWI 660

Query: 392 ELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----HDGTKRSDQKNSEEHLNDT-E 446
           E++ +VH F+V D +H +   +Y+ L  L   ++      D +       S+ H  D   
Sbjct: 661 EMETQVHTFLVDDTSHPEAEAVYKYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLT 720

Query: 447 VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFK 506
            HSEK+A+AFG++   PGT I + KNLR CGDCH F + +SK+V R  I+RD  RFHHF+
Sbjct: 721 THSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSKVVQRDIILRDRKRFHHFR 780

Query: 507 SGFCSCKDYW 516
           +G CSC ++W
Sbjct: 781 NGECSCGNFW 790



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 111/400 (27%), Positives = 172/400 (43%), Gaps = 75/400 (18%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVT---MLCLLPIC 57
           VF+E+  S   TV YNA+I+G+  N+    A++LF KM+ +G + +  T   +L  L + 
Sbjct: 102 VFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLALV 161

Query: 58  VDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS----VDYGRKLFDQVPEKG- 112
           VD     +    H   +K G     SV N L+++Y +C S    +   RK+FD +PEK  
Sbjct: 162 VDDEKQCVQF--HAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDE 219

Query: 113 -------------------------------LITWNAMISGYAQNGLATHVLELYREMKS 141
                                          L+ +NAMISGY   GL    LE+ R M S
Sbjct: 220 RSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVS 279

Query: 142 LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKK 201
            G+  D  T+  V+ +CA+     +G +V   +      S  F +N+L+ +Y +CG   +
Sbjct: 280 SGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDFSFHF-DNSLVTLYYKCGKFNE 338

Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGH-------------------------------G 230
           ARAIF+ MP K +VSW A++ GY   GH                               G
Sbjct: 339 ARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFG 398

Query: 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC 290
           E  ++LF  M + G  P   AF   + +C+  G    G + F+    K G          
Sbjct: 399 EEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNG-QQFHAQLVKIGFDSSLSAGNA 457

Query: 291 MVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           ++ +  + G + EA ++  +M    D   W AL+ A   H
Sbjct: 458 LITMYAKCGVVEEAQQVFRTMPC-LDSVSWNALIAALGQH 496



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 159/389 (40%), Gaps = 79/389 (20%)

Query: 63  LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE------------ 110
           L L    H   + FG      + N L+ +Y K   +DY R+LFD++ E            
Sbjct: 30  LQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVSG 89

Query: 111 ---------------------KGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
                                +  + +NAMI+G++ N      + L+ +MK  G  PD  
Sbjct: 90  YCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDF 149

Query: 150 TFVGVLSSCAH-LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGN----LKKARA 204
           T+  VL+  A  +      ++       +G G    ++NAL+++Y+RC +    L  AR 
Sbjct: 150 TYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARK 209

Query: 205 IFDGMPRKTVVSWT--------------------------------AIIGGYGIHGHGEV 232
           +FD +P K   SWT                                A+I GY   G  + 
Sbjct: 210 VFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQE 269

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHY-TC 290
           A+++   M+ SGI  D   + SV+ AC++A L   G + + Y ++     +    H+   
Sbjct: 270 ALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRR----EDFSFHFDNS 325

Query: 291 MVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN 350
           +V L  + G+ NEA  + E M  + D   W ALL       ++  A+L F ++ +   ++
Sbjct: 326 LVTLYYKCGKFNEARAIFEKMPAK-DLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILS 384

Query: 351 TGYYVLLSNIYSEARNLDGIMRVRMMMRE 379
             + +++S +       +G+     M RE
Sbjct: 385 --WMIMISGLAENGFGEEGLKLFSCMKRE 411


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/523 (39%), Positives = 308/523 (58%), Gaps = 9/523 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM-REQGVE--INSVTMLCLLPIC 57
           +FD   +  H +  ++A++S +V +     A++++ +M RE G     N  T    L   
Sbjct: 115 LFDRMPRRDHFS--WSAIVSAHVRHGQPRAALAIYRRMLREPGGSGADNEFTASSALAAA 172

Query: 58  VDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWN 117
                   G   HC  V+ G+D D  V + L  MY K G +D  R +FD++P + +++W 
Sbjct: 173 TAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSWT 232

Query: 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
           AM+  Y   G       L+  M   G+ P+  T+ GVL +CA   +  +G +V  ++  +
Sbjct: 233 AMLDRYFDAGRDGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKS 292

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
             G + F  +AL++MY++ G++  A  +F GMP+  +VSWTA+I GY  +G  + A+  F
Sbjct: 293 RTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCF 352

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
           D +L SG RPD   FV VLSAC+HAGL DKGL  F+ +K+KYG++   +HY C++DLL R
Sbjct: 353 DMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSR 412

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
           +G    A ++I +M V+P+  +W +LLG C+IHKNV LA  A   + ++EP N   YV L
Sbjct: 413 SGLFERAEDMINTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFEIEPENPATYVTL 472

Query: 358 SNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML 417
           +NIY+     D +  +R  M  R + K P  S++E+  RVH+F+VGD++H Q  EIY +L
Sbjct: 473 ANIYASVGLFDEVENMRRTMELRGITKMPASSWIEVGTRVHVFLVGDKSHPQAEEIYALL 532

Query: 418 DKLENLVQEHDGTKRS----DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
            KL   ++E      +         E+   D   HSE+LA+AFGII T  G+ I V KNL
Sbjct: 533 KKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGSPIKVFKNL 592

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           RICGDCH  IKL+SKIV R+ IVRD+ RFHHFK+G CSC+DYW
Sbjct: 593 RICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 118/263 (44%), Gaps = 36/263 (13%)

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM--KSLGVCPD-AVTFVGVLSS 157
            R LFD++P +   +W+A++S + ++G     L +YR M  +  G   D   T    L++
Sbjct: 112 ARALFDRMPRRDHFSWSAIVSAHVRHGQPRAALAIYRRMLREPGGSGADNEFTASSALAA 171

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
                    G E+   +   G  ++  + +AL +MYA+ G L  AR++FD MP + VVSW
Sbjct: 172 ATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSW 231

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS-------------HAGL 264
           TA++  Y   G      +LF  M++SGI P+   +  VL AC+                 
Sbjct: 232 TAMLDRYFDAGRDGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAK 291

Query: 265 TDKGLEYFYG-----MKNKYGL----------QPGPE--HYTCMVDLLGRAGQLNEALEL 307
           +  G   F G     M +KYG            P P+   +T M+    + GQ +EAL  
Sbjct: 292 SRTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHC 351

Query: 308 IESML---VEPDGAVWGALLGAC 327
            + +L     PD   +  +L AC
Sbjct: 352 FDMLLSSGFRPDHVTFVGVLSAC 374



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 10/144 (6%)

Query: 187 NALINMYARCGN-LKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
           N L+    R    L  ARA+FD MPR+   SW+AI+  +  HG    A+ ++  ML+   
Sbjct: 96  NTLVAALGRSPRGLASARALFDRMPRRDHFSWSAIVSAHVRHGQPRAALAIYRRMLRE-- 153

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMK-----NKYGLQPGPEHYTCMVDLLGRAGQ 300
            P G+   +  +A S             G +      + G+      ++ + D+  + G+
Sbjct: 154 -PGGSGADNEFTASSALAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKFGR 212

Query: 301 LNEALELIESMLVEPDGAVWGALL 324
           L++A  + + M V  D   W A+L
Sbjct: 213 LDDARSVFDRMPVR-DVVSWTAML 235


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/515 (40%), Positives = 307/515 (59%), Gaps = 18/515 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N +I G V +  + EA  +F +M ++ V  + VT L +L  C  PG L  G   H  
Sbjct: 313 IAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHAR 372

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK GL  D   GN L+ MY K GS+   R++FD++P++ +++W A++ GYA  G     
Sbjct: 373 AVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVES 432

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
              +++M   GV  + +T++ VL +C++  A   G E+  ++   G  ++  + NAL++M
Sbjct: 433 FSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSM 492

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CG+++ A  + +GM  + VV+W  +IGG   +G G  A+Q F+ M    +RP+ T F
Sbjct: 493 YFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTF 552

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           V+V+SAC    L ++G   F  M+  YG+ P  +HY CMVD+L RAG L EA ++I +M 
Sbjct: 553 VNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMP 612

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            +P  A+WGALL AC+ H NVE+ E A  + +KLEP N G YV LS IY+ A     + +
Sbjct: 613 FKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAK 672

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE------ 426
           +R +M+ER +KK+PG S++E+ G VH F+ GD++H +T EIY  L+ L   ++       
Sbjct: 673 LRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSELEALTKQIKSLGYVPD 732

Query: 427 -----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHL 481
                HD     DQ+  E  +     HSEKLAIA+G+I+T P T I V KNLR+C DCH 
Sbjct: 733 TRFVMHD----LDQEGKERAVCH---HSEKLAIAYGLISTPPETPIRVSKNLRVCTDCHT 785

Query: 482 FIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
             K +SKI  R+ I RDA RFHHFK+G CSC DYW
Sbjct: 786 ATKFISKITGREIIARDAHRFHHFKNGECSCGDYW 820



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 104/318 (32%), Positives = 169/318 (53%), Gaps = 2/318 (0%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           S    V +N +ISGY    L  EA +LF  M+++G+E +  T + +L  C  P  L  G 
Sbjct: 106 SNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGR 165

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
             H   ++ GL  + +VGN L++MY KCGSV   R++FD +  +  ++W  +   YA++G
Sbjct: 166 EVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESG 225

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
            A   L+ Y  M   GV P  +T++ VLS+C  L A   G ++  QI  +   S+  ++ 
Sbjct: 226 YAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVST 285

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           AL  MY +CG +K AR +F+ +P + V++W  +IGG    G  E A  +F  MLK  + P
Sbjct: 286 ALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAP 345

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           D   ++++LSAC+  G    G E  +    K GL         ++++  +AG + +A ++
Sbjct: 346 DRVTYLAILSACARPGGLACGKE-IHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQV 404

Query: 308 IESMLVEPDGAVWGALLG 325
            + M  + D   W AL+G
Sbjct: 405 FDRM-PKRDVVSWTALVG 421



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 172/329 (52%), Gaps = 16/329 (4%)

Query: 38  MREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS 97
           + ++G +++S   + LL  CV    L +G   H   ++FG+  +  + N L+ +YV CGS
Sbjct: 35  LHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGS 94

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
           V+  R+LFD+   K +++WN MISGYA  GL      L+  M+  G+ PD  TFV +LS+
Sbjct: 95  VNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSA 154

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
           C+   A + G EV  ++   G  +N  + NALI+MYA+CG+++ AR +FD M  +  VSW
Sbjct: 155 CSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSW 214

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
           T + G Y   G+ + +++ +  ML+ G+RP    +++VLSAC      +KG       K 
Sbjct: 215 TTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKG-------KQ 267

Query: 278 KYGLQPGPEHY------TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHK 331
            +      EH+      T +  +  + G + +A E+ E  L   D   W  ++G      
Sbjct: 268 IHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFEC-LPNRDVIAWNTMIGGLVDSG 326

Query: 332 NVELAELAFGKVIK--LEPMNTGYYVLLS 358
            +E A   F +++K  + P    Y  +LS
Sbjct: 327 QLEEAHGMFHRMLKECVAPDRVTYLAILS 355



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 177/380 (46%), Gaps = 16/380 (4%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  L   Y  +    E++  +  M ++GV  + +T + +L  C     L  G   H  
Sbjct: 212 VSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQ 271

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            V+     D  V   L  MY+KCG+V   R++F+ +P + +I WN MI G   +G     
Sbjct: 272 IVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEA 331

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
             ++  M    V PD VT++ +LS+CA  G  + G E+  +   +G  S+    NALINM
Sbjct: 332 HGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINM 391

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++ G++K AR +FD MP++ VVSWTA++GGY   G    +   F +ML+ G+  +   +
Sbjct: 392 YSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITY 451

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + VL ACS+      G E  +    K G+         ++ +  + G + +A+ + E M 
Sbjct: 452 MCVLKACSNPVALKWGKE-IHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMS 510

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
              D   W  L+G         L  L   +V+K E M       +        N+    R
Sbjct: 511 TR-DVVTWNTLIGGLA-QNGRGLEALQKFEVMKSEEMRPNATTFV--------NVMSACR 560

Query: 373 VRMMMRERR-----LKKDPG 387
           VR ++ E R     ++KD G
Sbjct: 561 VRNLVEEGRRQFASMRKDYG 580


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/505 (40%), Positives = 302/505 (59%), Gaps = 4/505 (0%)

Query: 16  NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVK 75
           N++I  Y  ++    +V ++ +M + G+  +S T   +L          LG   HC  ++
Sbjct: 111 NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQ 170

Query: 76  FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLEL 135
            G + +  V   L+ MY  C SV   R++FD++P++ +++WNA+I+GY  N +   V+++
Sbjct: 171 MGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDV 230

Query: 136 YREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR 195
           +REM+  G  P  VT VGVL +CAHLGA + G  ++  I  N    N F+  ALI+MYA+
Sbjct: 231 FREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAK 290

Query: 196 CGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSV 255
           CG + +A  IF  M  K V +W  +I GY ++G GE A+Q F  M+    +PD   F+ V
Sbjct: 291 CGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGV 350

Query: 256 LSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEP 315
           L AC H GL ++G  YF  MK ++GL+P  EHY CMVDLLGRAG L+EA +LI++M ++P
Sbjct: 351 LCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQP 410

Query: 316 DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRM 375
           D  +W  LLGAC+IH N++L E A  K+++LEP N   YVLL+N+Y+  +  D +  VR 
Sbjct: 411 DPIIWRELLGACRIHGNIQLGEFAIKKLLELEPNNGENYVLLANLYARDQRWDKVGEVRE 470

Query: 376 MMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ----EHDGTK 431
           MM  RR++K PG S +E+   V+ F+V +       E+Y++L  +   ++      D   
Sbjct: 471 MMDCRRVRKVPGCSSIEIDNVVYEFVVSNYIKPGFEEVYKLLADMNKKLKLAGYVADTGM 530

Query: 432 RSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVD 491
            S     EE  +    HSEKLA+AFG++ +  G  + ++KNLRIC DCH F K+VSK+  
Sbjct: 531 ASYDIEEEEKEHSLMYHSEKLALAFGLLKSPSGLTLRIVKNLRICQDCHGFFKIVSKVYR 590

Query: 492 RQFIVRDATRFHHFKSGFCSCKDYW 516
           R   VRD  RFHHF  G CSCKDYW
Sbjct: 591 RDISVRDRNRFHHFVGGACSCKDYW 615



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/246 (32%), Positives = 123/246 (50%), Gaps = 9/246 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE I   ++ V +NALI+GY  N +  + + +F +M+  G +   VTM+ +L  C   
Sbjct: 199 VFDE-IPDRNI-VSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHL 256

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  G           L L+  VG  L+ MY KCG VD   K+F  +  K + TWN +I
Sbjct: 257 GALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLI 316

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGYA NG     L+ +  M      PD VTF+GVL +C H G  + G      ++   FG
Sbjct: 317 SGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEE-FG 375

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGH---GEVAV 234
             P + +   ++++  R G L +A+ +   M  +   + W  ++G   IHG+   GE A+
Sbjct: 376 LRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELLGACRIHGNIQLGEFAI 435

Query: 235 QLFDEM 240
           +   E+
Sbjct: 436 KKLLEL 441


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/555 (38%), Positives = 319/555 (57%), Gaps = 41/555 (7%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF+  +++  L   +NA+ISGYV      EA++L  KMR  G++ + +T   ++  C + 
Sbjct: 245 VFEAMVEN--LGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANV 302

Query: 61  GYLWLGMCCHCICVKFGLDLD----FSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
           G   +G   H   +K  L+ +     SV N L+T+Y K   VD  RK+F  +P + +ITW
Sbjct: 303 GSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITW 362

Query: 117 NAMISGY-------------------------------AQNGLATHVLELYREMKSLGVC 145
           NA++SGY                               AQNG     L+L+++M+  G  
Sbjct: 363 NAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFE 422

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P    F G L++C+ LGA   G ++  Q+   G+ S+  + NA+I+MYA+CG ++ A ++
Sbjct: 423 PCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESV 482

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           F  MP   +VSW ++I   G HGHG  A++LFD+MLK G+ PD   F++VL+ACSHAGL 
Sbjct: 483 FVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLV 542

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           +KG  YF  M   YG+ P  +HY  MVDL  RAG  + A  +I+SM  +P   VW ALL 
Sbjct: 543 EKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLA 602

Query: 326 ACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKD 385
            C+IH N++L   A  ++ KL P N G YVLLSNIY++    + + +VR +MR++ ++K+
Sbjct: 603 GCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKE 662

Query: 386 PGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL----ENLVQEHDGTKRSDQKNSEEH 441
           P  S++E++ +VH+FMV D  H + + +YR L++L    + L    D          E+ 
Sbjct: 663 PACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQK 722

Query: 442 LNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATR 501
            +    HSEKLA+ FGI+   P   + V KN+RICGDCH   K +SK+  R+ IVRD  R
Sbjct: 723 EHALSTHSEKLAVGFGIMKLPPDATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKR 782

Query: 502 FHHFKSGFCSCKDYW 516
           FHHFK+G CSC+DYW
Sbjct: 783 FHHFKNGDCSCRDYW 797



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 120/447 (26%), Positives = 184/447 (41%), Gaps = 117/447 (26%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLG---MC 68
           +V YNA+I+GY  N     A+ LF  MR      +  T   +L   V    L++G    C
Sbjct: 112 SVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALV----LFVGNEQQC 167

Query: 69  --CHCICVKFGLD-LDFSVGNCLMTMYVK--------CGSVDYGRKLFDQVPEKGLIT-- 115
              HC  VK G+  +  SV N L+++YVK        C ++   RKLFD++P++  +T  
Sbjct: 168 GQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWT 227

Query: 116 -----------------------------WNAMISGYAQNGLATHVLELYREMKSLGVCP 146
                                        WNAMISGY   G     L L R+M+ LG+  
Sbjct: 228 TMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQF 287

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP----FLNNALINMYARCGNLKKA 202
           D +T+  ++S+CA++G+  +G ++   I  N    N      ++NALI +Y +   + +A
Sbjct: 288 DDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEA 347

Query: 203 RAIFDGMPRKTVVSWTAIIGGY-------------------------------GIHGHGE 231
           R IF  MP + +++W AI+ GY                                 +G G+
Sbjct: 348 RKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGD 407

Query: 232 VAVQLFDEMLKSGIRPDGTAFVSVLSACS-----------HAGLTDKGLEYFYGMKN--- 277
             ++LF +M   G  P   AF   L+ACS           HA L   G E    + N   
Sbjct: 408 EGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMI 467

Query: 278 ----KYGLQPGPE------------HYTCMVDLLGRAGQLNEALELIESMLVE---PDGA 318
               K G+    E             +  M+  LG+ G   +A+EL + ML E   PD  
Sbjct: 468 SMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRI 527

Query: 319 VWGALLGACKIHKNVELAELAFGKVIK 345
            +  +L AC     VE     F  +++
Sbjct: 528 TFLTVLTACSHAGLVEKGRHYFNSMLE 554



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 134/289 (46%), Gaps = 57/289 (19%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVP--EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           L+T Y   G+++ GR++F+  P   +  + +NAMI+GYA NG     LEL+R M+     
Sbjct: 85  LITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFR 144

Query: 146 PDAVTFVGVLSSCA-HLGAHSVGLEVEQQIQANGFG--SNPFLNNALINMYAR------- 195
           PD  TF  VLS+    +G      ++   +   G G  S+  L NAL+++Y +       
Sbjct: 145 PDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVL-NALLSVYVKRASELGI 203

Query: 196 -CGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS----------- 243
            C  +  AR +FD MP++  ++WT +I GY  +     A ++F+ M+++           
Sbjct: 204 PCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISG 263

Query: 244 --------------------GIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQ 282
                               GI+ D   + +++SAC++ G    G + + Y +KN+    
Sbjct: 264 YVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNEL--- 320

Query: 283 PGPEHYTC------MVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
             P H  C      ++ L  +  +++EA ++  +M V  +   W A+L 
Sbjct: 321 -NPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVR-NIITWNAILS 367



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 89/244 (36%), Gaps = 74/244 (30%)

Query: 155 LSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP---- 210
           L S     + S+   V   + A+GF       N L+ MY +  N+  AR +F+ +P    
Sbjct: 20  LCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNPDA 79

Query: 211 --RKTVVS---------------------------WTAIIGGYGIHGHGEVAVQLFDEML 241
             R T+++                           + A+I GY  +G G  A++LF  M 
Sbjct: 80  IARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMR 139

Query: 242 KSGIRPDGTAFVSVLSA------------------------CSHAGLTDKGLEYFYGMKN 277
           +   RPD   F SVLSA                        C  + + +  L  +    +
Sbjct: 140 RDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRAS 199

Query: 278 KYGL--------------QPGPEH--YTCMVDLLGRAGQLNEALELIESMLVEPDGAVWG 321
           + G+               P  +   +T M+    R   LN A E+ E+M VE  GA W 
Sbjct: 200 ELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAM-VENLGAAWN 258

Query: 322 ALLG 325
           A++ 
Sbjct: 259 AMIS 262


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/508 (39%), Positives = 312/508 (61%), Gaps = 6/508 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  LISGY  +   SEA++LF KM   G + N  T+  LL           G   H  
Sbjct: 172 VSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAF 231

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K+G D++  VG+ L+ MY +   +   + +F+ +  K +++WNA+I+G+A+ G   HV
Sbjct: 232 SLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHV 291

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + L+ +M   G  P   T+  VL+ CA  G+   G  V   +  +G     ++ N LI+M
Sbjct: 292 MRLFXQMLRQGFEPTHFTYSSVLA-CASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDM 350

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+ G++K A+ +F  + ++ +VSW +II GY  HG G  A+QLF++MLK+ ++P+   F
Sbjct: 351 YAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITF 410

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +SVL+ACSH+GL D+G +Y++ +  K+ ++    H+  +VDLLGRAG+LNEA + IE M 
Sbjct: 411 LSVLTACSHSGLLDEG-QYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMP 469

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           ++P  AVWGALLGAC++HKN++L   A  ++ +L+P ++G +VLLSNIY+ A  L    +
Sbjct: 470 IKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAK 529

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----HD 428
           VR MM+E  +KK+P  S+VE++  VH+F+  D +H    EI RM +K+   ++E     D
Sbjct: 530 VRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPD 589

Query: 429 GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
            +      N ++     + HSEKLA+AF ++ T PG  I + KN+RICGDCH   K  S+
Sbjct: 590 TSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFASR 649

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           ++ R+ IVRD  RFHHF  G CSC+DYW
Sbjct: 650 VLGREIIVRDTNRFHHFLHGMCSCRDYW 677



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 105/215 (48%), Gaps = 4/215 (1%)

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P+   +  +L+ C +L     G  +   IQ++ F  +  L N ++NMYA+CG+L++A+ +
Sbjct: 103 PERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDL 162

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           FD MP K +VSWT +I GY   G    A+ LF +ML  G +P+     S+L A S  G +
Sbjct: 163 FDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKA-SGTGPS 221

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           D      +    KYG        + ++D+  R   + EA ++I + L   +   W AL+ 
Sbjct: 222 DHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREA-KVIFNSLAAKNVVSWNALIA 280

Query: 326 ACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
                   E     F ++++   EP +  Y  +L+
Sbjct: 281 GHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVLA 315


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/514 (40%), Positives = 309/514 (60%), Gaps = 15/514 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGV-EINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V ++ALI G+VL   ++EA +LF  M  +G+  +++ ++   L +C     L +G   H 
Sbjct: 271 VTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHA 330

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           +  K G+  D + GN L++MY K G ++    LFD++  K  I++ A++SGY QNG A  
Sbjct: 331 LLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEE 390

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
              ++++M++  V PD  T V ++ +C+HL A   G      +   G      + N+LI+
Sbjct: 391 AFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLID 450

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+CG +  +R +FD MP + +VSW  +I GYGIHG G+ A  LF  M   G  PD   
Sbjct: 451 MYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVT 510

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+ +++ACSH+GL  +G  +F  M +KYG+ P  EHY CMVDLL R G L+EA + I+SM
Sbjct: 511 FICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSM 570

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            ++ D  VWGALLGAC+IHKN++L +     + KL P  TG +VLLSNI+S A   D   
Sbjct: 571 PLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAA 630

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
            VR++ + +  KK PG S++E+ G +H F+ GD++H  + +IY  LD +  L+   D  K
Sbjct: 631 EVRIIQKVKGFKKSPGCSWIEINGSLHAFVGGDQSHPCSPDIYHELDNI--LI---DIKK 685

Query: 432 RSDQKNSEEHLNDTEV---------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLF 482
              Q ++   L D E          HSEKLAIAFG+++ +    I V KNLR+CGDCH  
Sbjct: 686 LGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTA 745

Query: 483 IKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           IK ++ + +R  IVRDA RFHHFK+G CSC D+W
Sbjct: 746 IKYMTLVRNRTIIVRDANRFHHFKNGQCSCGDFW 779



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/290 (34%), Positives = 155/290 (53%), Gaps = 12/290 (4%)

Query: 1   VFDE-SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD 59
           +FDE +IK T   + Y AL+SGYV N    EA  +F KM+   V+ +  TM+ L+P C  
Sbjct: 363 LFDEIAIKDT---ISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSH 419

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              L  G C H   +  GL L+ S+ N L+ MY KCG +D  R++FD++P + +++WN M
Sbjct: 420 LAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTM 479

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I+GY  +GL      L+  MK+ G  PD VTF+ ++++C+H G  + G      +  + +
Sbjct: 480 IAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTM-THKY 538

Query: 180 GSNPFLNN--ALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQL 236
           G  P + +   ++++ AR G L +A      MP K  V  W A++G   IH + ++  Q+
Sbjct: 539 GILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQV 598

Query: 237 FDEMLKSGIRPDGTA-FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
              + K G  P+GT  FV + +  S AG  D+  E     K K G +  P
Sbjct: 599 SRMIQKLG--PEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVK-GFKKSP 645



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 159/323 (49%), Gaps = 7/323 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +NA+++GY  + +   A++    M+++ G+  N+ T++ LLP+    G L+ G   H 
Sbjct: 166 VAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHA 225

Query: 72  ICVKFGLDLD---FSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            C++  LD +     +G  L+ MY KC  + Y  ++F  +  +  +TW+A+I G+     
Sbjct: 226 YCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDR 285

Query: 129 ATHVLELYREMKSLGVC-PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
            T    L+++M   G+C   A +    L  CA L    +G ++   +  +G  ++    N
Sbjct: 286 MTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGN 345

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           +L++MYA+ G + +A  +FD +  K  +S+ A++ GY  +G  E A  +F +M    ++P
Sbjct: 346 SLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQP 405

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           D    VS++ ACSH      G    +G     GL         ++D+  + G+++ + ++
Sbjct: 406 DIATMVSLIPACSHLAALQHG-RCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQV 464

Query: 308 IESMLVEPDGAVWGALLGACKIH 330
            + M    D   W  ++    IH
Sbjct: 465 FDKMPAR-DIVSWNTMIAGYGIH 486



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 149/334 (44%), Gaps = 7/334 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           YNALI  Y        A+ L+  M    V  N  T   +L  C     L  G   H    
Sbjct: 67  YNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKACSALADLCAGRTIHAHAA 126

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             GL  D  V   L+ +Y++C        +F ++P + ++ WNAM++GYA +G+  H + 
Sbjct: 127 AVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIA 186

Query: 135 LYREMKSL-GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP---FLNNALI 190
              +M+   G+ P+A T V +L   A  GA   G  V           N     +  AL+
Sbjct: 187 HLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALL 246

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI-RPDG 249
           +MYA+C +L  A  +F GM  +  V+W+A+IGG+ +      A  LF +ML  G+     
Sbjct: 247 DMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSA 306

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
           T+  S L  C+       G +  + +  K G+         ++ +  +AG +NEA  L +
Sbjct: 307 TSVASALRVCASLADLRMGTQ-LHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFD 365

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
            + ++ D   +GALL     +   E A L F K+
Sbjct: 366 EIAIK-DTISYGALLSGYVQNGKAEEAFLVFKKM 398



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 112/242 (46%), Gaps = 8/242 (3%)

Query: 89  MTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDA 148
           +  ++  G +   R++FD++P      +NA+I  Y+  G     ++LYR M    V P+ 
Sbjct: 40  LEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNK 99

Query: 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208
            TF  VL +C+ L     G  +     A G  ++ F++ ALI++Y RC     A  +F  
Sbjct: 100 YTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAK 159

Query: 209 MPRKTVVSWTAIIGGYGIHG--HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD 266
           MP + VV+W A++ GY  HG  H  +A  L D   + G+RP+ +  VS+L   +  G   
Sbjct: 160 MPMRDVVAWNAMLAGYANHGMYHHAIA-HLLDMQDRGGLRPNASTLVSLLPLLAQHGALF 218

Query: 267 KGLEYFYGMKNKYGLQPGPEHY---TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGAL 323
           +G          Y L    E     T ++D+  +   L  A  +   M V  +   W AL
Sbjct: 219 QGTSVHAYCLRAY-LDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNE-VTWSAL 276

Query: 324 LG 325
           +G
Sbjct: 277 IG 278


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/505 (41%), Positives = 305/505 (60%), Gaps = 5/505 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+ISGY  N L  +AV  +  M  +GV  + +T+  +L  C   G L  G+  H  
Sbjct: 363 VSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEF 422

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             + GL     V N L+ MY KC  +D   ++F ++P K +I+W ++I G   N  +   
Sbjct: 423 ADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEA 482

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L  +++M  L + P++VT V VLS+CA +GA S G E+       G G + FL NAL++M
Sbjct: 483 LFFFQQM-ILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDM 541

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y RCG ++ A   F+    K V SW  ++ GY   G G +AV+LF +M++S + PD   F
Sbjct: 542 YVRCGRMEPAWNQFNSC-EKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITF 600

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S+L ACS +G+   GLEYF  M++K+ + P  +HY  +VDLLGRAG+L +A E I+ M 
Sbjct: 601 TSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMP 660

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           ++PD A+WGALL AC+I++NVEL ELA   + +++  + GYY+LL N+Y+++   D + R
Sbjct: 661 IDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVAR 720

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR +MRE RL  DPG S+VE+ G+VH F+ GD  H Q  EI  +L+     ++    +  
Sbjct: 721 VRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSMS 780

Query: 433 SDQKNSEEHLNDTEV---HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKI 489
            D +  +   +  E+   HSE+LAIAFG+INT PGT I V KNL +C +CH  +K +SK+
Sbjct: 781 KDSRRDDIDASKAEIFCGHSERLAIAFGLINTVPGTPIWVTKNLYMCENCHNTVKFISKV 840

Query: 490 VDRQFIVRDATRFHHFKSGFCSCKD 514
           V R   VRD  +FHHFK G CSC D
Sbjct: 841 VRRGISVRDTEQFHHFKDGVCSCGD 865



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/347 (32%), Positives = 180/347 (51%), Gaps = 7/347 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N L+ GY       EA++L+ +M   G+  +  T  C+L  C     L  G   H   +
Sbjct: 163 WNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVI 222

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           ++G + D  V N L+TMYVKCG +   R +FD++P +  I+WNAMISGY +N +    L 
Sbjct: 223 RYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLR 282

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+  M+   V PD +T   V+S+C  LG   +G EV   +   GF +   +NN+LI M++
Sbjct: 283 LFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHS 342

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
             G   +A  +F  M  K +VSWTA+I GY  +G  E AV+ +  M   G+ PD     S
Sbjct: 343 SVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIAS 402

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VLSAC+  GL DKG+   +   ++ GL         ++D+  +   +++ALE+   +   
Sbjct: 403 VLSACAGLGLLDKGI-MLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRI--- 458

Query: 315 PDGAV--WGALLGACKIHKNVELAELAFGKVI-KLEPMNTGYYVLLS 358
           P+  V  W +++   +++     A   F ++I  L+P +     +LS
Sbjct: 459 PNKNVISWTSIILGLRLNYRSFEALFFFQQMILSLKPNSVTLVSVLS 505



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 128/402 (31%), Positives = 190/402 (47%), Gaps = 14/402 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD   +   ++  +NA+ISGY  N +  E + LF  MRE  V+ + +TM  ++  C   
Sbjct: 252 VFDRMPRRDRIS--WNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEAL 309

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G   LG   H   +K G   + SV N L+ M+   G  D    +F ++  K L++W AMI
Sbjct: 310 GDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMI 369

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGY +NGL    +E Y  M+  GV PD +T   VLS+CA LG    G+ + +     G  
Sbjct: 370 SGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLT 429

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S   + N+LI+MY++C  + KA  +F  +P K V+SWT+II G  ++     A+  F +M
Sbjct: 430 SYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQM 489

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           + S ++P+    VSVLSAC+  G    G E  +    + GL         ++D+  R G+
Sbjct: 490 ILS-LKPNSVTLVSVLSACARIGALSCGKE-IHAHALRTGLGFDGFLPNALLDMYVRCGR 547

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
           +  A     S   E D A W  LL          LA   F K+I+  + P    +  LL 
Sbjct: 548 MEPAWNQFNS--CEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLC 605

Query: 359 NIYSEARNLDGIMRVRMMMRERRLKKDPGY----SYVELKGR 396
                    DG+     M  E +    P      S V+L GR
Sbjct: 606 ACSRSGMVTDGLEYFESM--EHKFHIAPNLKHYASVVDLLGR 645



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 147/310 (47%), Gaps = 2/310 (0%)

Query: 16  NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVK 75
           N+LI    L   + +A+     M+E  V +   T + LL +C        G   H    K
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122

Query: 76  FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLEL 135
               L   +GN L++M+V+ G +     +F ++ E+ L +WN ++ GYA+ G     L L
Sbjct: 123 TVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNL 182

Query: 136 YREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR 195
           Y  M  +G+ PD  TF  VL +C  L   + G EV   +   GF S+  + NALI MY +
Sbjct: 183 YHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVK 242

Query: 196 CGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSV 255
           CG++  AR +FD MPR+  +SW A+I GY  +      ++LF  M +  + PD     SV
Sbjct: 243 CGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSV 302

Query: 256 LSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEP 315
           +SAC   G    G E  +G   K G          ++ +    G  +EA E++ S +   
Sbjct: 303 ISACEALGDERLGRE-VHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEA-EMVFSKMEFK 360

Query: 316 DGAVWGALLG 325
           D   W A++ 
Sbjct: 361 DLVSWTAMIS 370


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/504 (42%), Positives = 298/504 (59%), Gaps = 8/504 (1%)

Query: 20  SGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLD 79
           SGY+   L    + ++ +M  + V  N  T   L+  C     +  G   H   +KFG  
Sbjct: 67  SGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFG 126

Query: 80  LD-FSVGNCLMTMYVKCGSVDYGRKLFDQVPEK--GLITWNAMISGYAQNGLATHVLELY 136
            D FS+ N L+ MYV   S++  R++FD +P++    ++WNAMI+ Y Q+        L+
Sbjct: 127 ADGFSLNN-LIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALF 185

Query: 137 REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196
             M+   V  D      +LS+C  LGA   G  +   I+ +G   +  L   +I+MY +C
Sbjct: 186 DRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKC 245

Query: 197 GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL 256
           G L+KA  +F+ +P+K + SW  +IGG  +HG GE A++LF EM +  + PDG  FV+VL
Sbjct: 246 GCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVL 305

Query: 257 SACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPD 316
           SAC+H+GL ++G  YF  M    GL+PG EH+ CMVDLLGRAG L EA +LI  M V PD
Sbjct: 306 SACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPD 365

Query: 317 GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMM 376
             V GAL+GAC+IH N EL E    KVI+LEP N+G YVLL+N+Y+ A   + + +VR +
Sbjct: 366 AGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKL 425

Query: 377 MRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD-- 434
           M +R +KK PG+S +E +  V  F+ G R H Q  EIY  LD++   ++       +D  
Sbjct: 426 MNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGV 485

Query: 435 --QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDR 492
               + EE  N    HSEKLAIAFG++ T PG  + + KNLRIC DCH   KL+SK+ DR
Sbjct: 486 LHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDR 545

Query: 493 QFIVRDATRFHHFKSGFCSCKDYW 516
           + I+RD  RFHHF+ G CSCKDYW
Sbjct: 546 EIIIRDRNRFHHFRMGGCSCKDYW 569



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 167/334 (50%), Gaps = 21/334 (6%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD   +    +V +NA+I+ YV ++ + EA +LF +MR + V ++      +L  C   
Sbjct: 151 VFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGL 210

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  G   H    K G++LD  +   ++ MY KCG ++   ++F+++P+KG+ +WN MI
Sbjct: 211 GALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMI 270

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            G A +G     +EL++EM+   V PD +TFV VLS+CAH G    G    Q +     G
Sbjct: 271 GGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYM-TEVLG 329

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLF 237
             P + +   ++++  R G L++AR + + MP         A++G   IHG+ E+  Q+ 
Sbjct: 330 LKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIG 389

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP-----EHYTCMV 292
            ++++  + P  +    +L+    +    + +     + N  G++  P     E  + + 
Sbjct: 390 KKVIE--LEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVD 447

Query: 293 DLL--GRA--------GQLNEALELIESMLVEPD 316
           + +  GRA         +L+E LE I S+   PD
Sbjct: 448 EFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPD 481


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/510 (41%), Positives = 303/510 (59%), Gaps = 6/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA ISGY       EA+ LF KM +  V  +  TM+ +L  C   G + LG   H  
Sbjct: 201 VSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSW 260

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               G   +  + N L+ +Y KCG ++    LF  +  K +I+WN +I GY    L    
Sbjct: 261 INDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEA 320

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI--QANGFGSNPFLNNALI 190
           L L+++M   G  P+ VT + +LS+CAHLGA  +G  +   I  +  G  +   L  +LI
Sbjct: 321 LLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLI 380

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MYA+CG+++ A+ +FD M  +++ SW A+I G+ +HG    A  +F  M K+GI PD  
Sbjct: 381 DMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDI 440

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            FV +LSACSH+G+ D G   F  M   Y L P  EHY CM+DL G +G   EA ++I +
Sbjct: 441 TFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINT 500

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M +EPDG +W +LL ACK+H NVEL E     +IK+EP N G YVLLSNIY+ A   + +
Sbjct: 501 MEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPENPGSYVLLSNIYATAERWNEV 560

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH--- 427
            + R ++ ++ +KK PG S +E+   VH F++GD+ H +  EIY ML+++E L++E    
Sbjct: 561 AKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFV 620

Query: 428 -DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
            D ++   +   E        HSEKLAIAFG+I+T PGT++ ++KNLR+C +CH   KL+
Sbjct: 621 PDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLI 680

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SKI  R+ I RD TRFHHF+ G CSC DYW
Sbjct: 681 SKIYKREIIARDRTRFHHFRDGECSCNDYW 710



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 133/417 (31%), Positives = 206/417 (49%), Gaps = 39/417 (9%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD +I+   L + +N +  G+ L+S    A+ L+  M   G+  NS T   LL  C   
Sbjct: 59  VFD-TIQEPXLLI-WNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKS 116

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCG------------------------ 96
                G   H   +KFG DLD  +   L++MYV+ G                        
Sbjct: 117 XAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALI 176

Query: 97  -------SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
                   ++   K+FD++P K +++WNA ISGYA+ G     LEL+++M    V PD  
Sbjct: 177 TGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDES 236

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
           T V VLS+CA  G+  +G +V   I  +GFG N  + NALI++Y++CG L+ A  +F G+
Sbjct: 237 TMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGL 296

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
             K V+SW  +IGGY      + A+ LF +ML+SG +P+    +S+LSAC+H G  D G 
Sbjct: 297 SNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGR 356

Query: 270 E-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACK 328
             + Y  K   G+       T ++D+  + G +  A ++ +SML     + W A++    
Sbjct: 357 WIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSS-WNAMIFGFA 415

Query: 329 IHKNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLD-GIMRVRMMMRERRL 382
           +H     A   F ++ K  +EP +  +  LLS   S +  LD G    R M R+ +L
Sbjct: 416 MHGRANAAFDIFSRMRKNGIEPDDITFVGLLSAC-SHSGMLDLGRHIFRSMTRDYKL 471



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 123/257 (47%), Gaps = 33/257 (12%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           Y   +FD + E  L+ WN M  G+A +      L+LY  M SLG+ P++ TF  +L SCA
Sbjct: 55  YAISVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCA 114

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
              A   G ++  Q+   GF  + +++ +LI+MY + G L+ A+ + D    + VVS+TA
Sbjct: 115 KSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTA 174

Query: 220 IIGGYGIHGHGEVAVQLFDE-------------------------------MLKSGIRPD 248
           +I GY   G  E A ++FDE                               M+K+ +RPD
Sbjct: 175 LITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPD 234

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
            +  V+VLSAC+ +G  + G +  +   N +G     +    ++DL  + G+L  A  L 
Sbjct: 235 ESTMVTVLSACAQSGSIELGRQ-VHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLF 293

Query: 309 ESMLVEPDGAVWGALLG 325
           +  L   D   W  L+G
Sbjct: 294 QG-LSNKDVISWNTLIG 309


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/520 (39%), Positives = 317/520 (60%), Gaps = 6/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD  +  T     +NAL+ GY  NS   +A+ L+ +M + G++ +  T+  LL  C   
Sbjct: 266 VFD--LMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRM 323

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H   ++ GL +D  +G  L+++Y+ CG     + LFD +  + L++WN MI
Sbjct: 324 KSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMI 383

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GY+QNGL    + L+R+M S G+ P  +  + V  +C+ L A  +G E+          
Sbjct: 384 AGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLT 443

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            + F+++++I+MYA+ G +  ++ IFD +  K V SW  II GYGIHG G+ A++LF++M
Sbjct: 444 EDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKM 503

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           L+ G++PD   F  +L ACSHAGL + GLEYF  M N + ++P  EHYTC+VD+LGRAG+
Sbjct: 504 LRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGR 563

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           +++AL LIE M  +PD  +W +LL +C+IH N+ L E    K+++LEP     YVL+SN+
Sbjct: 564 IDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNL 623

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDR---NHHQTVEIYRML 417
           ++ +   D + RVR  M++  L+KD G S++E+ G+VH F++GD       +  E +R L
Sbjct: 624 FAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRL 683

Query: 418 D-KLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
           + K+ ++    D          E+ +     HSEKLAI+FG++NT+ G  + V KNLRIC
Sbjct: 684 EVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRIC 743

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           GDCH   K +SK+V+R  +VRD  RFHHF+ G CSC DYW
Sbjct: 744 GDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 783



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 170/334 (50%), Gaps = 4/334 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +NA++S Y  N L  +A+S+F ++      + ++ T+ C++  C     L LG   H + 
Sbjct: 175 WNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMA 234

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYG-RKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            K  L  D  VGN L+ MY KCG V+   +++FD +  K + +WNA++ GYAQN      
Sbjct: 235 TKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKA 294

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+LY +M   G+ PD  T   +L +C+ + +   G E+      NG   +PF+  +L+++
Sbjct: 295 LDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSL 354

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y  CG    A+ +FDGM  +++VSW  +I GY  +G  + A+ LF +ML  GI+P   A 
Sbjct: 355 YICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAI 414

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + V  ACS       G E  +    K  L       + ++D+  + G +  +  + +  L
Sbjct: 415 MCVCGACSQLSALRLGKE-LHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDR-L 472

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
            E D A W  ++    IH   + A   F K+++L
Sbjct: 473 REKDVASWNVIIAGYGIHGRGKEALELFEKMLRL 506



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 135/297 (45%), Gaps = 40/297 (13%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140
           DF +   ++TMY  CGS    R +FD++  K L  WNA++S Y +N L    + ++ E+ 
Sbjct: 140 DFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELI 199

Query: 141 SLGV-CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNL 199
           S+    PD  T   V+ +CA L    +G  +          S+ F+ NALI MY +CG +
Sbjct: 200 SVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLV 259

Query: 200 KKA-RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSA 258
           ++A + +FD M  KTV SW A++ GY  +     A+ L+ +M  SG+ PD     S+L A
Sbjct: 260 EEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLA 319

Query: 259 CSHAGLTDKGLE-YFYGMKNKYGLQP------------------------GPEH-----Y 288
           CS       G E + + ++N   + P                        G EH     +
Sbjct: 320 CSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSW 379

Query: 289 TCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGACKIHKNVELAELAFGK 342
             M+    + G  +EA+ L   ML   ++P       + GAC      +L+ L  GK
Sbjct: 380 NVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACS-----QLSALRLGK 431


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/511 (40%), Positives = 305/511 (59%), Gaps = 14/511 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NALISG        E++SLF +MR++G +IN  T+  +L        +      H +  
Sbjct: 374 WNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAE 433

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K G   D  V N L+  Y KC  + Y  K+F++     +I + +MI+  +Q       ++
Sbjct: 434 KIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIK 493

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+ EM   G+ PD      +L++CA L A+  G +V   +    F ++ F  NAL+  YA
Sbjct: 494 LFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYA 553

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG+++ A   F G+P K VVSW+A+IGG   HGHG+ A+ +F  M+   I P+     S
Sbjct: 554 KCGSIEDADLAFSGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTS 613

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VL AC+HAGL D+   YF  MK  +G+    EHY+CM+DLLGRAG+L++A+EL+ SM  E
Sbjct: 614 VLCACNHAGLVDEAKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFE 673

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
            + AVWGALL A ++H++ EL +LA  K+  LEP  +G +VLL+N Y+ A   D + +VR
Sbjct: 674 ANAAVWGALLAASRVHRDPELGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVR 733

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD 434
            +M++ ++KK+P  S+VELK RVH F+VGD++H +  +IY  L++L +L+     +K   
Sbjct: 734 KLMKDSKVKKEPAMSWVELKDRVHTFIVGDKSHPRARDIYAKLEELGDLM-----SKAGY 788

Query: 435 QKNSEEHLNDTEV---------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
             N E  L+D +          HSE+LA+AF +I+T  G  I V KNLRIC DCH+  K 
Sbjct: 789 VPNLEVDLHDVDKSEKELLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHVAFKF 848

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +SKIV R+ I+RD  RFHHF  G CSC DYW
Sbjct: 849 ISKIVSREIIIRDINRFHHFSDGACSCGDYW 879



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 162/329 (49%), Gaps = 8/329 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE+    H  V +++L++ Y  N+L  EA++ F  MR +GV  N   +  +L    D 
Sbjct: 59  VFDETPDPCH--VSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDA 116

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP-EKGLITWNAM 119
           G   LG+  H + V  GL  D  V N L+ MY   G VD  R++FD+   ++  ++WN M
Sbjct: 117 G---LGVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGM 173

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           +S + +N   +  +EL+ EM   GV P+   F  V+++C        G +V   +   G+
Sbjct: 174 MSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGY 233

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             + F  NAL++MY++ G++  A  +F  +P+  VVSW A I G  +HGH + A++L  +
Sbjct: 234 DKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQ 293

Query: 240 MLKSGIRPDGTAFVSVLS-ACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
           M  SG+ P+     S+L                 +G   K            +VD+  + 
Sbjct: 294 MKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKY 353

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGAC 327
           G L++A ++ E  +   D  +W AL+  C
Sbjct: 354 GLLDDARKVFE-WIPRKDLLLWNALISGC 381



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 121/391 (30%), Positives = 179/391 (45%), Gaps = 48/391 (12%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE+ +  +  V +N ++S +V N   S+AV LFG+M   GV  N     C++  C   
Sbjct: 157 VFDEAARDRN-AVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGS 215

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H + V+ G D D    N L+ MY K G +     +F +VP+  +++WNA I
Sbjct: 216 RDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFI 275

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF- 179
           SG   +G   H LEL  +MKS G+ P+  T    LSS     A +         Q +GF 
Sbjct: 276 SGCVLHGHDQHALELLLQMKSSGLVPNVFT----LSSILKACAGAGAGAFALGRQIHGFM 331

Query: 180 -----GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG--HGEV 232
                 S+ ++  AL++MYA+ G L  AR +F+ +PRK ++ W A+I G   HG  HGE 
Sbjct: 332 IKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCS-HGGCHGE- 389

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVL-SACSHAGLTD--------------------KGLEY 271
           ++ LF  M K G   + T   +VL S  S   ++D                     GL  
Sbjct: 390 SLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLID 449

Query: 272 FYGMKN--KYGLQPGPEH-------YTCMVDLLGRAGQLNEALELIESML---VEPDGAV 319
            Y   N  +Y  +   EH       +T M+  L +     +A++L   ML   +EPD  V
Sbjct: 450 SYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFV 509

Query: 320 WGALLGACKIHKNVELAELAFGKVIKLEPMN 350
             +LL AC      E  +     +IK + M 
Sbjct: 510 LSSLLNACASLSAYEQGKQVHAHLIKRKFMT 540



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 163/335 (48%), Gaps = 6/335 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC--CH 70
           V +NA ISG VL+     A+ L  +M+  G+  N  T+  +L  C   G     +    H
Sbjct: 269 VSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIH 328

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
              +K   D D  +G  L+ MY K G +D  RK+F+ +P K L+ WNA+ISG +  G   
Sbjct: 329 GFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHG 388

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             L L+  M+  G   +  T   VL S A L A S   +V    +  GF S+  + N LI
Sbjct: 389 ESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLI 448

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           + Y +C  L+ A  +F+      ++++T++I       HGE A++LF EML+ G+ PD  
Sbjct: 449 DSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPF 508

Query: 251 AFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
              S+L+AC+     ++G + + + +K K+       +   +V    + G + +A +L  
Sbjct: 509 VLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGN--ALVYTYAKCGSIEDA-DLAF 565

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI 344
           S L +     W A++G    H + + A   F +++
Sbjct: 566 SGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMV 600



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 131/269 (48%), Gaps = 8/269 (2%)

Query: 63  LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISG 122
           L+LG   H   +K GL   F   N L++ Y KC      R++FD+ P+   ++W+++++ 
Sbjct: 20  LFLGAHIHAHLLKSGLLHAFR--NHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTA 77

Query: 123 YAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN 182
           Y+ N L    L  +R M++ GV  +      VL      G   +G++V     + G   +
Sbjct: 78  YSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAG---LGVQVHAVAVSTGLSGD 134

Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPR-KTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
            F+ NAL+ MY   G + +AR +FD   R +  VSW  ++  +  +     AV+LF EM+
Sbjct: 135 IFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMV 194

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301
            SG+RP+   F  V++AC+ +   + G +  + M  + G          +VD+  + G +
Sbjct: 195 WSGVRPNEFGFSCVVNACTGSRDLEAGRK-VHAMVVRTGYDKDVFTANALVDMYSKLGDI 253

Query: 302 NEALELIESMLVEPDGAVWGALLGACKIH 330
           + A  L+   + + D   W A +  C +H
Sbjct: 254 HMA-ALVFGKVPKTDVVSWNAFISGCVLH 281


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/509 (41%), Positives = 296/509 (58%), Gaps = 37/509 (7%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +N++++GY  +    +A+ +  +M    +  ++ TM  L P+               
Sbjct: 203 VVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPV--------------- 247

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           +C                  Y    +V Y   +F+++ +K LI+WN MI+ Y  N +   
Sbjct: 248 VC------------------YTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNE 289

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            + L+ +M+  G+ PDAVT   +L +C  L A  +G  + + I+      N  L NAL++
Sbjct: 290 AVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLD 349

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+CG L++AR +FD M  + VVSWT+++  YG  G G  AV LF +ML SG  PD  A
Sbjct: 350 MYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIA 409

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           FVSVLSACSH GL D+G  YF  M  +YG+ P  EH+ CMVDL GRAG++ EA   I+ M
Sbjct: 410 FVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQM 469

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            +EP+  VWGALL AC++H  +++  +A   + +L P  +GYYVLLSNIY++A     +M
Sbjct: 470 PMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVM 529

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
            VR  M++  +KK PG S VEL G+VH F+ GD+ H Q   IY  LD L   ++E     
Sbjct: 530 NVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIP 589

Query: 432 RSDQKNSEEHLNDTE----VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           +++    +  + D E    +HSEKLAI F I+NT  GT I + KNLR+CGDCH+ IKL+S
Sbjct: 590 QTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLIS 649

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KIV R  IVRD  RFHHF +G CSC DYW
Sbjct: 650 KIVSRNIIVRDCNRFHHFSNGICSCGDYW 678



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 150/326 (46%), Gaps = 37/326 (11%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD S++     V +N +I  YV N+L  EA+S+F  M       +  T  C+L  C   
Sbjct: 93  IFDRSLEKN--VVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGL 150

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L +G+  H   VK GLD +  +GN L+ MY KCG +   RK+ DQ+P + +++WN+M+
Sbjct: 151 DNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMV 210

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GYAQ+G     LE+ +EM SL +  DA T   +                          
Sbjct: 211 AGYAQSGQFDDALEICKEMDSLNLNHDAGTMASL-------------------------- 244

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
                  + +  Y    N++    +F+ M +K ++SW  +I  Y  +     AV LF +M
Sbjct: 245 -------SPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQM 297

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            + G++PD     S+L AC        G    +    K  L+P       ++D+  + G 
Sbjct: 298 EECGMKPDAVTIASLLPACGDLSALFLG-RRLHKYIEKGNLRPNLLLENALLDMYAKCGC 356

Query: 301 LNEALELIESMLVEPDGAVWGALLGA 326
           L EA ++ + M +  D   W +++ A
Sbjct: 357 LEEARDVFDKMRLR-DVVSWTSMMSA 381



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 153/330 (46%), Gaps = 23/330 (6%)

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
           PG   L      I +   L +D ++   LM  Y   G     R +FD+  EK ++ +N M
Sbjct: 49  PGIKTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVM 108

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I  Y  N L    L +++ M S    PD  TF  VL +C+ L    VGL+V   I   G 
Sbjct: 109 IRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGL 168

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            +N F+ NAL+ MY +CG L++AR + D MP + VVSW +++ GY   G  + A+++  E
Sbjct: 169 DTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKE 228

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M    +  D     S+     +  L  + ++Y + M  +   +     +  M+ +     
Sbjct: 229 MDSLNLNHDAGTMASLSPVVCYTSL--ENVQYIHNMFERMT-KKNLISWNVMIAIYVNNS 285

Query: 300 QLNEALEL---IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYY 354
             NEA+ L   +E   ++PD     +LL AC      +L+ L  G+ +   +E  N    
Sbjct: 286 MPNEAVSLFLQMEECGMKPDAVTIASLLPACG-----DLSALFLGRRLHKYIEKGNLRPN 340

Query: 355 VLLSN----IYS------EARNLDGIMRVR 374
           +LL N    +Y+      EAR++   MR+R
Sbjct: 341 LLLENALLDMYAKCGCLEEARDVFDKMRLR 370


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/509 (41%), Positives = 296/509 (58%), Gaps = 37/509 (7%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +N++++GY  +    +A+ +  +M    +  ++ TM  L P+               
Sbjct: 203 VVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPV--------------- 247

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           +C                  Y    +V Y   +F+++ +K LI+WN MI+ Y  N +   
Sbjct: 248 VC------------------YTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNE 289

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            + L+ +M+  G+ PDAVT   +L +C  L A  +G  + + I+      N  L NAL++
Sbjct: 290 AVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLD 349

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+CG L++AR +FD M  + VVSWT+++  YG  G G  AV LF +ML SG  PD  A
Sbjct: 350 MYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIA 409

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           FVSVLSACSH GL D+G  YF  M  +YG+ P  EH+ CMVDL GRAG++ EA   I+ M
Sbjct: 410 FVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQM 469

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            +EP+  VWGALL AC++H  +++  +A   + +L P  +GYYVLLSNIY++A     +M
Sbjct: 470 PMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVM 529

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
            VR  M++  +KK PG S VEL G+VH F+ GD+ H Q   IY  LD L   ++E     
Sbjct: 530 NVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIP 589

Query: 432 RSDQKNSEEHLNDTE----VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           +++    +  + D E    +HSEKLAI F I+NT  GT I + KNLR+CGDCH+ IKL+S
Sbjct: 590 QTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLIS 649

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KIV R  IVRD  RFHHF +G CSC DYW
Sbjct: 650 KIVSRNIIVRDCNRFHHFSNGICSCGDYW 678



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 150/326 (46%), Gaps = 37/326 (11%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD S++     V +N +I  YV N+L  EA+S+F  M       +  T  C+L  C   
Sbjct: 93  IFDRSLEKN--VVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGL 150

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L +G+  H   VK GLD +  +GN L+ MY KCG +   RK+ DQ+P + +++WN+M+
Sbjct: 151 DNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMV 210

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GYAQ+G     LE+ +EM SL +  DA T   +                          
Sbjct: 211 AGYAQSGQFDDALEICKEMDSLNLNHDAGTMASL-------------------------- 244

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
                  + +  Y    N++    +F+ M +K ++SW  +I  Y  +     AV LF +M
Sbjct: 245 -------SPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQM 297

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            + G++PD     S+L AC        G    +    K  LQP       ++D+  + G 
Sbjct: 298 EECGMKPDAVTIASLLPACGDLSALFLG-RRLHKYIEKGNLQPNLLLENALLDMYAKCGC 356

Query: 301 LNEALELIESMLVEPDGAVWGALLGA 326
           L EA ++ + M +  D   W +++ A
Sbjct: 357 LEEARDVFDKMRLR-DVVSWTSMMSA 381



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 153/330 (46%), Gaps = 23/330 (6%)

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
           PG   L      I +   L +D ++   LM  Y   G     R +FD+  EK ++ +N M
Sbjct: 49  PGIKTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVM 108

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I  Y  N L    L +++ M S    PD  TF  VL +C+ L    VGL+V   I   G 
Sbjct: 109 IRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGL 168

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            +N F+ NAL+ MY +CG L++AR + D MP + VVSW +++ GY   G  + A+++  E
Sbjct: 169 DTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKE 228

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M    +  D     S+     +  L  + ++Y + M  +   +     +  M+ +     
Sbjct: 229 MDSLNLNHDAGTMASLSPVVCYTSL--ENVQYIHNMFERMT-KKNLISWNVMIAIYVNNS 285

Query: 300 QLNEALEL---IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYY 354
             NEA+ L   +E   ++PD     +LL AC      +L+ L  G+ +   +E  N    
Sbjct: 286 MPNEAVSLFLQMEECGMKPDAVTIASLLPACG-----DLSALFLGRRLHKYIEKGNLQPN 340

Query: 355 VLLSN----IYS------EARNLDGIMRVR 374
           +LL N    +Y+      EAR++   MR+R
Sbjct: 341 LLLENALLDMYAKCGCLEEARDVFDKMRLR 370


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/523 (39%), Positives = 318/523 (60%), Gaps = 13/523 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD   +  H  V ++ +++G+V      EA+ ++ +MRE GV  + V M+ ++  C   
Sbjct: 168 VFDGMPRKDH--VAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLT 225

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G   +G   H   ++ G+ +D  +   L+ MY K G  D  R++F  +P +  ++WNA+I
Sbjct: 226 GNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALI 285

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SG+AQNG A   L+L+REM + G+ PD+   V  L +CA +G   +G  +   I      
Sbjct: 286 SGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFILRR-LE 344

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
               L  A+++MY++CG+L+ AR +F+ +  + +V W A+I   G HG G  A+ LF E+
Sbjct: 345 FQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQEL 404

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            ++GI+PD   F S+LSA SH+GL ++G  +F  M  ++G++P  +H  C+VDLL R+G 
Sbjct: 405 NETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGL 464

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           + EA E++ SM  EP   +W ALL  C  +K +EL E    K+++ +P + G   L+SN+
Sbjct: 465 VEEANEMLASMHTEPTIPIWVALLSGCLNNKKLELGETIAKKILESQPEDIGVLALVSNL 524

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+ A+  D +  +R +M++   KK PGYS +E+ G  H F++ D++H Q  EI +M+ KL
Sbjct: 525 YAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVHGTRHAFVMEDQSHPQHQEILKMISKL 584

Query: 421 ENLVQEHDGTKRS-------DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
              +++     R+       D+   E+ L+    HSE+LAIAFG++NTSPGT +V++KNL
Sbjct: 585 SFEMRKMGYVPRTEFVYHDLDEDVKEQLLS---YHSERLAIAFGLLNTSPGTRLVIIKNL 641

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           R+CGDCH  IK +SKIVDR+ +VRDA RFHHFK G CSC DYW
Sbjct: 642 RVCGDCHDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 684



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 147/318 (46%), Gaps = 8/318 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NAL++          A+ +F  +       +S T    L  C   G L           
Sbjct: 80  WNALLAARSRAGSPGAALRVFRAL-PSSARPDSTTFTLALTACARLGDLDAAEAVRVRAF 138

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             G   D  V + L+ +Y +CG++    ++FD +P K  + W+ M++G+   G     L 
Sbjct: 139 AAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALG 198

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           +Y  M+  GV  D V  VGV+ +C   G   +G  V  +   +G   +  +  +L++MYA
Sbjct: 199 MYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYA 258

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           + G+   AR +F  MP +  VSW A+I G+  +GH + A+ LF EM  SG++PD  A VS
Sbjct: 259 KNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVS 318

Query: 255 VLSACSHAGLTD--KGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            L AC+  G     K +  F   + ++    G    T ++D+  + G L  A +L    L
Sbjct: 319 ALLACADVGFLKLGKSIHGFILRRLEFQCILG----TAVLDMYSKCGSLESARKLFNK-L 373

Query: 313 VEPDGAVWGALLGACKIH 330
              D  +W A++  C  H
Sbjct: 374 SSRDLVLWNAMIACCGTH 391



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 118/239 (49%), Gaps = 5/239 (2%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKG--LITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           L   Y + G++D         P     +  WNA+++  ++ G     L ++R + S    
Sbjct: 50  LAAAYARVGALDAAESTLAASPSSRSCIPAWNALLAARSRAGSPGAALRVFRALPS-SAR 108

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           PD+ TF   L++CA LG       V  +  A G+G + F+ +AL+++Y+RCG +  A  +
Sbjct: 109 PDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDAIRV 168

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           FDGMPRK  V+W+ ++ G+   G    A+ ++  M + G+  D    V V+ AC+  G T
Sbjct: 169 FDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGNT 228

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
             G    +G   ++G++      T +VD+  + G  + A ++   M+   +   W AL+
Sbjct: 229 RMGAS-VHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFR-MMPYRNAVSWNALI 285


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/524 (40%), Positives = 307/524 (58%), Gaps = 14/524 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF+E  K     + ++ +I+ Y  +    EA+ +F +MR   V  N  T+  LL  C   
Sbjct: 303 VFEEMPKDD--VIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASL 360

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L LG   HC  VK GLD++  V N LM MY KCG ++   +LF + P    ++WN +I
Sbjct: 361 VDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVI 420

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GY Q G     L L+++M    V    VT+  VL +CA + A   G ++        + 
Sbjct: 421 VGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYD 480

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            N  + NALI+MYA+CGN+K AR +FD +     VSW A+I GY +HG    A++ F+ M
Sbjct: 481 KNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESM 540

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           L++  +PD   FV +LSACS+AGL D+G  YF  M  +Y ++P  EHYTCMV LLGR+G 
Sbjct: 541 LETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGH 600

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L++A +L+  +  EP   VW ALL AC IH +VEL  ++  +V+++EP +   +VLLSNI
Sbjct: 601 LDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSNI 660

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+ AR    +  +R  M+ + ++K+PG S++E +GRVH F VGD +H  T  I  ML+ L
Sbjct: 661 YANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTSHPDTKLINGMLEWL 720

Query: 421 ENLVQEHDGTKRS--------DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKN 472
            N+   ++G            +  + E+ L    VHSE+LA+A+G+I T   + + ++KN
Sbjct: 721 -NMKARNEGYVPDFSSVLLDVEDVDKEQRL---WVHSERLALAYGLIRTPSISPLRIIKN 776

Query: 473 LRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           LRIC DCH  IKL+SKIV R  I+RD  RFHHF  G CSC DYW
Sbjct: 777 LRICADCHAAIKLISKIVQRDIIIRDMNRFHHFHEGICSCGDYW 820



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 160/318 (50%), Gaps = 2/318 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  +++ YV N    E++ LF +MR  G + N+ T   +L  CV      +G   H  
Sbjct: 212 VSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGC 271

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K     +  VG  L+ +Y+K G VD   ++F+++P+  +I W+ MI+ YAQ+  +   
Sbjct: 272 AFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEA 331

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           +E++  M+   V P+  T   +L +CA L    +G ++   +   G   N F++NAL++M
Sbjct: 332 IEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDM 391

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG ++ +  +F   P  T VSW  +I GY   G+GE A+ LF +ML+  ++     +
Sbjct: 392 YAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTY 451

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            SVL AC+     + G +  + +  K            ++D+  + G + +A  L+  ML
Sbjct: 452 SSVLRACAGIAALEPGSQ-IHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDA-RLVFDML 509

Query: 313 VEPDGAVWGALLGACKIH 330
            E D   W A++    +H
Sbjct: 510 REHDQVSWNAMISGYSVH 527



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 145/309 (46%), Gaps = 5/309 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE       TV +  LI GY      SEA+ LF +++ +G E+N      +L + V  
Sbjct: 101 LFDEMPDRN--TVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSA 158

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
            +  LG   H    K G D D  VG  L+  Y  CG  +  R++FD +  K +++W  M+
Sbjct: 159 EWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMV 218

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           + Y +N      L+L+  M+ +G  P+  TF  VL +C  L   +VG  V        + 
Sbjct: 219 ACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYL 278

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
              F+   LI++Y + G++  A  +F+ MP+  V+ W+ +I  Y      E A+++F  M
Sbjct: 279 EELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRM 338

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGL-EYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
            +  + P+     S+L AC  A L D  L    +    K GL         ++D+  + G
Sbjct: 339 RRGLVLPNQFTLASLLQAC--ASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCG 396

Query: 300 QLNEALELI 308
           ++  +L+L 
Sbjct: 397 RMENSLQLF 405



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 135/291 (46%), Gaps = 13/291 (4%)

Query: 27  LVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGN 86
           ++++   L  +      E N+     LL  C+  G    G   HC  +K G  LD    N
Sbjct: 24  IITQRSFLAQRTSHSSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANN 83

Query: 87  CLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCP 146
            L+  YVK  S+    KLFD++P++  +++  +I GY+Q    +  + L+  ++  G   
Sbjct: 84  ILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHEL 143

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF 206
           +   F  VL          +G  V   +   GF S+ F+  ALI+ Y+ CG  + AR +F
Sbjct: 144 NPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVF 203

Query: 207 DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD 266
           D +  K +VSWT ++  Y  +   E +++LF  M   G +P+   F SVL AC       
Sbjct: 204 DAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACV------ 257

Query: 267 KGLEYFYGMKNKYGLQPGPEHY------TCMVDLLGRAGQLNEALELIESM 311
            GLE F   K  +G      +         ++DL  ++G +++AL++ E M
Sbjct: 258 -GLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEM 307


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/509 (39%), Positives = 310/509 (60%), Gaps = 26/509 (5%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + ++I+GY  +     A+ L  +M ++GV+++ V    +L  C   G L  G   H  
Sbjct: 318 VSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDY 377

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
                ++ +  V N LM MY KCGS+D    +F  +  K +I+WN MI            
Sbjct: 378 IKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIG----------- 426

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
                E+K     PD+ T   +L +CA L A   G E+   I  NG+ S+  + NAL+++
Sbjct: 427 -----ELK-----PDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDL 476

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CG L  AR +FD +P K +VSWT +I GYG+HG+G  A+  F+EM  +GI PD  +F
Sbjct: 477 YVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSF 536

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +S+L ACSH+GL ++G  +FY MKN + ++P  EHY CMVDLL R G L++A E IE++ 
Sbjct: 537 ISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLP 596

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           + PD  +WGALL  C+I+ ++ELAE    +V +LEP NTGYYVLL+NIY+EA   + + R
Sbjct: 597 IAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKR 656

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHH-QTVEIYRMLDKLENLVQEHDGTK 431
           +R  + ++ L+K+PG S++E+KG+V+LF+ G+ + H  + +I  +L K+   ++E     
Sbjct: 657 MREKIGKKGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFP 716

Query: 432 RSDQK--NSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           ++     N++E   +  +  HSEKLA+AFG++   P   + V KNLR+CGDCH   K +S
Sbjct: 717 KTKYALINADEMQKEMALCGHSEKLAMAFGLLALPPRKTVRVTKNLRVCGDCHEMAKFMS 776

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K   R+ ++RD+ RFHHFK+G+CSC+ +W
Sbjct: 777 KETRREIVLRDSNRFHHFKNGYCSCRGFW 805



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 159/318 (50%), Gaps = 23/318 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N++ISGYV N L    + ++ +M   G++++  T++ +L  C + G L LG   H +
Sbjct: 217 ISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSL 276

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K   +   +  N L+ MY KCG +D   ++F+++ E+ +++W +MI+GY ++G +   
Sbjct: 277 AIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGA 336

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + L ++M+  GV  D V    +L +CA  G+   G +V   I+AN   SN F+ NAL++M
Sbjct: 337 IRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDM 396

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CG++  A ++F  M  K ++SW  +IG                      ++PD    
Sbjct: 397 YTKCGSMDGANSVFSTMVVKDIISWNTMIG---------------------ELKPDSRTM 435

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
             +L AC+     ++G E  +G   + G          +VDL  + G L  A  L+  M+
Sbjct: 436 ACILPACASLSALERGKE-IHGYILRNGYSSDRHVANALVDLYVKCGVLGLA-RLLFDMI 493

Query: 313 VEPDGAVWGALLGACKIH 330
              D   W  ++    +H
Sbjct: 494 PSKDLVSWTVMISGYGMH 511



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/319 (31%), Positives = 159/319 (49%), Gaps = 28/319 (8%)

Query: 62  YLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCG----SVDYGRKLFDQVPEKGLITWN 117
           YLW  M       K G   DF    CL  + V+ G      +   +LFD++ ++ +I+WN
Sbjct: 166 YLWNFMVSEY--AKIG---DFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWN 220

Query: 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
           +MISGY  NGL    LE+Y++M  LG+  D  T + VL  CA+ G  S+G  V      +
Sbjct: 221 SMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS 280

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
            F      +N L++MY++CG+L  A  +F+ M  + VVSWT++I GY   G  + A++L 
Sbjct: 281 TFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLL 340

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
            +M K G++ D  A  S+L AC+ +G  D G +    +K    ++        ++D+  +
Sbjct: 341 QQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKAN-NMESNLFVCNALMDMYTK 399

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLG---------ACKIHKNVELAELAFGKVIKLEP 348
            G ++ A  +  +M+V+ D   W  ++G         AC +     L+ L  GK I    
Sbjct: 400 CGSMDGANSVFSTMVVK-DIISWNTMIGELKPDSRTMACILPACASLSALERGKEIH--- 455

Query: 349 MNTGYYVLLSNIYSEARNL 367
              GY  +L N YS  R++
Sbjct: 456 ---GY--ILRNGYSSDRHV 469



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 18/182 (9%)

Query: 110 EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLE 169
           ++ +  +NA I  + Q G   + +EL    +   +  +  T+  VL  CA   + + G +
Sbjct: 63  DRQVTDYNAKILHFCQLGNLENAMELVCMCQKSEL--ETKTYSSVLQLCAGSKSLTDGKK 120

Query: 170 VEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGH 229
           V   I++N    +  L   L+++YA CG+LK+ R +FD M +K V  W  ++  Y   G 
Sbjct: 121 VHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGD 180

Query: 230 GEVAVQLFDEMLKSGI---RP-------------DGTAFVSVLSACSHAGLTDKGLEYFY 273
            + ++ LF  M++ GI   RP             D  ++ S++S     GLT++GLE + 
Sbjct: 181 FKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYK 240

Query: 274 GM 275
            M
Sbjct: 241 QM 242


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/518 (40%), Positives = 311/518 (60%), Gaps = 19/518 (3%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +N++I+G+V N L  EA  LF +MR +GV++       ++ +C +   +      HC
Sbjct: 259 AVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHC 318

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE-KGLITWNAMISGYAQNGLAT 130
             +K G D D ++   LM  Y KC  +D   KLF  +   + +++W A+ISGY QNG   
Sbjct: 319 QVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTD 378

Query: 131 HVLELYREMK-SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA----NGFGSNPFL 185
             + L+ +M+   GV P+  TF  VL++CA   A +  +E  +Q  +    +GF +   +
Sbjct: 379 RAMNLFCQMRREEGVEPNEFTFSSVLNACA---APTASVEQGKQFHSCSIKSGFSNALCV 435

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
           ++AL+ MYA+ GN++ A  +F     + +VSW ++I GY  HG G+ ++++F+EM    +
Sbjct: 436 SSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNL 495

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
             DG  F+ V+SAC+HAGL ++G  YF  M   Y + P  EHY+CMVDL  RAG L +A+
Sbjct: 496 ELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAM 555

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR 365
           +LI  M       +W  LL AC++H NV+L ELA  K+I L+P ++  YVLLSNIY+ A 
Sbjct: 556 DLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAG 615

Query: 366 NLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ 425
           N     +VR +M  +++KK+ GYS++E+K +   FM GD +H Q+  IY  L++L   ++
Sbjct: 616 NWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLK 675

Query: 426 E---HDGTKRSDQKNSEEHLNDTEV----HSEKLAIAFGIINTSPGTEIVVMKNLRICGD 478
           +   +  TK       EEH    EV    HSE+LAIAFG+I T PGT I ++KNLR+CGD
Sbjct: 676 DAGYYPDTKYVLHDVEEEH---KEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGD 732

Query: 479 CHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           CH  IKL+SKI  R  +VRD+ RFHHFK G CSC DYW
Sbjct: 733 CHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 770



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 140/249 (56%), Gaps = 6/249 (2%)

Query: 16  NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLW---LGMCCHCI 72
           N L+  +  N    EA++LF  +R  G   +  ++ C+L +C   G L+   +G   HC 
Sbjct: 61  NHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVC---GCLFDRIVGKQVHCQ 117

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
           C+K G   D SVG  L+ MY+K  SV+ G ++FD++  K +++W ++++GY QNGL    
Sbjct: 118 CIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQA 177

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+L+ +M+  G+ P+  TF  VL   A  GA   G++V   +  +G  S  F+ N+++NM
Sbjct: 178 LKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNM 237

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++   +  A+A+FD M  +  VSW ++I G+  +G    A +LF  M   G++   T F
Sbjct: 238 YSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIF 297

Query: 253 VSVLSACSH 261
            +V+  C++
Sbjct: 298 ATVIKLCAN 306



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 104/362 (28%), Positives = 175/362 (48%), Gaps = 22/362 (6%)

Query: 1   VFDE-SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD 59
           VFDE  +K+    V + +L++GY  N L  +A+ LF +M+ +G++ N  T   +L     
Sbjct: 149 VFDEMRVKNV---VSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAA 205

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
            G +  G+  H + +K GLD    VGN ++ MY K   V   + +FD +  +  ++WN+M
Sbjct: 206 DGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSM 265

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I+G+  NGL     EL+  M+  GV      F  V+  CA++   S   ++  Q+  NG 
Sbjct: 266 IAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGS 325

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGM-PRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
             +  +  AL+  Y++C  +  A  +F  M   + VVSWTAII GY  +G  + A+ LF 
Sbjct: 326 DFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFC 385

Query: 239 EMLK-SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
           +M +  G+ P+   F SVL+AC+    + +  + F+    K G        + +V +  +
Sbjct: 386 QMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAK 445

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIH---------------KNVELAELAFGK 342
            G +  A E+ +   V+ D   W +++     H               KN+EL  + F  
Sbjct: 446 RGNIESANEVFKRQ-VDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIG 504

Query: 343 VI 344
           VI
Sbjct: 505 VI 506



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 128/263 (48%), Gaps = 19/263 (7%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           + ++LFD+ P++GL   N ++  +++N      L L+  ++  G   D  +   VL  C 
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCG 103

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
            L    VG +V  Q    GF  +  +  +L++MY +  +++    +FD M  K VVSWT+
Sbjct: 104 CLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTS 163

Query: 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279
           ++ GY  +G  E A++LF +M   GI+P+   F +VL   +  G  +KG++  + M  K 
Sbjct: 164 LLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ-VHTMVIKS 222

Query: 280 GLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAV-WGALLGACKIH-------- 330
           GL         MV++  ++  +++A  + +SM  E   AV W +++     +        
Sbjct: 223 GLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSM--ENRNAVSWNSMIAGFVTNGLDLEAFE 280

Query: 331 -------KNVELAELAFGKVIKL 346
                  + V+L +  F  VIKL
Sbjct: 281 LFYRMRLEGVKLTQTIFATVIKL 303


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/545 (39%), Positives = 319/545 (58%), Gaps = 45/545 (8%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T  +N+ +          +A+ LF ++R+  V  ++ T   +L  C++   L  G   H 
Sbjct: 93  TFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHG 152

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWN-------------- 117
           +  K G   +  + N ++ +Y  CG +   R LF+++P++ ++TWN              
Sbjct: 153 VVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEG 212

Query: 118 -----------------AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160
                            +MI+GY Q G A   + L+ +M+  GV  + VT V VL++CA 
Sbjct: 213 AYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACAD 272

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           LGA  +G+ + +    +GF  N  ++N LI+MY +CG L++A  +F+ M  +TVVSW+A+
Sbjct: 273 LGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAM 332

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           IGG  +HG  E A++LF +M + GI P+G  F+ +L ACSH GL  +G  +F  M   YG
Sbjct: 333 IGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYG 392

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           + P  EHY CMVDLL RAG L+EA E I +M ++P+G VWGALLGAC++HKNVE+AE A 
Sbjct: 393 IIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAI 452

Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400
             +++L+P+N GYYV+LSNIY+EA   +   RVR  M++R++KK PG+S + + G VH F
Sbjct: 453 KHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEF 512

Query: 401 MVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTE---------VHSEK 451
           + G+ +H  T +I++   + E L++E     +    N+   L D E          HSEK
Sbjct: 513 VAGEESHPDTEQIFQ---RWEELLEEM--RLKGYVPNTSVVLLDIEEGEKVKFVSRHSEK 567

Query: 452 LAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCS 511
           LA+ FG++NT   T I +MKNLRIC DCH   KL+S IV+R+ +VRD  RFH F    CS
Sbjct: 568 LALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCS 627

Query: 512 CKDYW 516
           C+DYW
Sbjct: 628 CRDYW 632



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 136/298 (45%), Gaps = 41/298 (13%)

Query: 97  SVDYGRKLFD----QVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFV 152
           S  Y +++F     Q PE     WN+ +   A+       + L+  ++   VCPD  T  
Sbjct: 75  SFHYAQQIFKCVEKQKPET--FVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCS 132

Query: 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK 212
            VL +C +L   S G  +   ++  GF SN +L N ++++YA CG + +AR +F+ MP++
Sbjct: 133 SVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQR 192

Query: 213 TVV-------------------------------SWTAIIGGYGIHGHGEVAVQLFDEML 241
            VV                               SWT++I GY   G  + A+ LF +M 
Sbjct: 193 DVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKME 252

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301
           ++G++ +    V+VL+AC+  G  D G+   +   N++G +        ++D+  + G L
Sbjct: 253 EAGVKCNEVTVVAVLAACADLGALDLGMR-IHEYSNRHGFKRNVRISNTLIDMYVKCGCL 311

Query: 302 NEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV--IKLEPMNTGYYVLL 357
            EA ++ E M  E     W A++G   +H   E A   F  +  + +EP    +  LL
Sbjct: 312 EEACKVFEEM-EERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLL 368


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/506 (41%), Positives = 305/506 (60%), Gaps = 5/506 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N LI  Y  N     A+SL+ +M E G++ ++ T+  +L  C     +  G   H   +
Sbjct: 127 WNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRVIHERVI 186

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           + G + D  VG  L+ MY KCG V   R +FD++ ++  + WN+M++ YAQNG     L 
Sbjct: 187 RSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLS 246

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L  EM + GV P   T V V+SS A +     G E+      +GF  N  +  ALI+MYA
Sbjct: 247 LCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKVKTALIDMYA 306

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG++K A  +F+ +  K VVSW AII GY +HG    A+ LF+ M+K   +PD   FV 
Sbjct: 307 KCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERMMKEA-QPDHITFVG 365

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
            L+ACS   L D+G   +  M     + P  EHYTCMVDLLG  GQL+EA +LI  M V 
Sbjct: 366 ALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDVM 425

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
           PD  VWGALL +CK H NVELAE+A  K+I+LEP ++G YV+L+N+Y+++   +G+ R+R
Sbjct: 426 PDSGVWGALLNSCKTHGNVELAEVALEKLIELEPDDSGNYVILANMYAQSGKWEGVARLR 485

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH----DGT 430
            +M ++ +KK+   S++E+K +V+ F+ GD +H  +  IY  L +LE L++E     D  
Sbjct: 486 QLMIDKGIKKNIACSWIEVKNKVYAFLSGDVSHPNSGAIYAELKRLEGLMREAGYVPDTG 545

Query: 431 KRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIV 490
                   +E  +    HSE+LAIAFG+I+T PGT +++ KNLRIC DCH+ IK +SKI 
Sbjct: 546 SVFHDVEEDEKTDMVCSHSERLAIAFGLISTLPGTRLLITKNLRICEDCHVAIKFISKIT 605

Query: 491 DRQFIVRDATRFHHFKSGFCSCKDYW 516
           +R+  VRD  R+HHF+ G CSC DYW
Sbjct: 606 EREITVRDVNRYHHFRHGLCSCGDYW 631



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 154/331 (46%), Gaps = 3/331 (0%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           LL  C+    L  G   H    + G+  +  +   L+  Y  C S+     LFD++P+  
Sbjct: 64  LLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLFDKIPKGN 123

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
           L  WN +I  YA NG     + LY +M   G+ PD  T   VL +C+ L     G  + +
Sbjct: 124 LFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRVIHE 183

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
           ++  +G+  + F+  AL++MYA+CG +  AR +FD +  +  V W +++  Y  +GH + 
Sbjct: 184 RVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDE 243

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
           ++ L  EM   G+RP     V+V+S+ +       G E  +G   ++G Q   +  T ++
Sbjct: 244 SLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGRE-IHGFGWRHGFQYNDKVKTALI 302

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTG 352
           D+  + G +  A  L E  L E     W A++    +H     A   F +++K    +  
Sbjct: 303 DMYAKCGSVKVACVLFER-LREKRVVSWNAIITGYAMHGLAVEALDLFERMMKEAQPDHI 361

Query: 353 YYVLLSNIYSEARNLD-GIMRVRMMMRERRL 382
            +V      S  R LD G     +M+R+ R+
Sbjct: 362 TFVGALAACSRGRLLDEGRALYNLMVRDCRI 392



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 129/262 (49%), Gaps = 13/262 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+ +      V +N++++ Y  N    E++SL  +M  +GV     T++ ++    D 
Sbjct: 216 VFDKIVDRD--AVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADI 273

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H    + G   +  V   L+ MY KCGSV     LF+++ EK +++WNA+I
Sbjct: 274 ACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAII 333

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GYA +GLA   L+L+  M      PD +TFVG L++C+       G  +   +      
Sbjct: 334 TGYAMHGLAVEALDLFERMMKEAQ-PDHITFVGALAACSRGRLLDEGRAL-YNLMVRDCR 391

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIF---DGMPRKTVVSWTAIIGGYGIHGHGEVAVQ 235
            NP + +   ++++   CG L +A  +    D MP   V  W A++     HG+ E+A  
Sbjct: 392 INPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMPDSGV--WGALLNSCKTHGNVELAEV 449

Query: 236 LFDEMLKSGIRPDGTAFVSVLS 257
             +++++  + PD +    +L+
Sbjct: 450 ALEKLIE--LEPDDSGNYVILA 469



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 2/176 (1%)

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
           +  +L SC    A   G ++  ++   G   N  L   L+N Y+ C +L+ A  +FD +P
Sbjct: 61  YASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLFDKIP 120

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270
           +  +  W  +I  Y  +G  E A+ L+ +ML+ G++PD      VL ACS      +G  
Sbjct: 121 KGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEG-R 179

Query: 271 YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
             +    + G +        +VD+  + G + +A  + +  +V+ D  +W ++L A
Sbjct: 180 VIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDK-IVDRDAVLWNSMLAA 234


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/526 (40%), Positives = 303/526 (57%), Gaps = 57/526 (10%)

Query: 48  VTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQ 107
           V+++ +LP C   G    G   H I V+ G   D  VGN L+ MY KCG VD   K+FD+
Sbjct: 14  VSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKVFDR 73

Query: 108 VPEKGLITWNAMISGY-----------------------------------AQNGLATHV 132
           + EK +++WNAM++GY                                   AQ GL    
Sbjct: 74  IKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGCET 133

Query: 133 LELYREM----------------KSLG-VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175
           L+++REM                K  G V P+  T    L +CA L A  +G ++   I 
Sbjct: 134 LDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHAYIL 193

Query: 176 ANGFGSN-PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
            N F S   ++ N LI+MYA+ G++  AR +FD + +K  VSWT+++ GYG+HG G+ A+
Sbjct: 194 RNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEAL 253

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
           ++FDEM + G++PDG   + VL ACSH+G+ D+G+E+F  M  ++G+ PG EHY CMVDL
Sbjct: 254 EVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYACMVDL 313

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           LGRAG+LNEA+ELIE M +EP   VW ALL  C+IH NVEL E A  ++++L   N G Y
Sbjct: 314 LGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNSENDGSY 373

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
            LLSNIY+ AR    + RVR +M+   ++K PG S+V+ K     F V D+ H Q+ +IY
Sbjct: 374 TLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVADKTHPQSKQIY 433

Query: 415 RMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVM 470
            +L  L   ++       +       + EE ++    HSEKLA+A+GI+ ++PG  I + 
Sbjct: 434 EILRSLTQRIKVLGYVPETSFALHDVDDEEKVDLLFEHSEKLALAYGILISAPGAPIRIT 493

Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KNLR+CGDCH  I  +S I+D + I+RD++RFHHFK G CSC  YW
Sbjct: 494 KNLRVCGDCHNAITYISMIIDHEIILRDSSRFHHFKKGSCSCSGYW 539



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 134/306 (43%), Gaps = 59/306 (19%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSV------------ 48
           VFD  IK   + V +NA+++GY       +A+ LF KMRE+ +E+N V            
Sbjct: 70  VFDR-IKEKDV-VSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQR 127

Query: 49  ----------------------------------------TMLCLLPICVDPGYLWLGMC 68
                                                   T+ C L  C     L LG  
Sbjct: 128 GLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQ 187

Query: 69  CHCICVKFGLDLDF-SVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
            H   ++   D  F  V NCL+ MY K G +D  R +FD + +K  ++W ++++GY  +G
Sbjct: 188 IHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHG 247

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
                LE++ EM+ +G+ PD VT + VL +C+H G    G+E    +    FG  P   +
Sbjct: 248 RGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKE-FGVIPGQEH 306

Query: 188 --ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
              ++++  R G L +A  + +GM    + + W A++ G  IH + E+      ++L+  
Sbjct: 307 YACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELN 366

Query: 245 IRPDGT 250
              DG+
Sbjct: 367 SENDGS 372



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 100/204 (49%), Gaps = 31/204 (15%)

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           PD V+ V VL +CA +GA   G  V      +G   + F+ NAL++MYA+CG + +A  +
Sbjct: 11  PDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKV 70

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           FD +  K VVSW A++ GY   G  E A+ LF++M +  I  +  ++ +V++A +  GL 
Sbjct: 71  FDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLG 130

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM-----LVEPDGAVW 320
            + L+ F  M++                     G+ N+ALEL   M     LV+P+    
Sbjct: 131 CETLDVFREMQH---------------------GEANDALELFSWMFKQDGLVKPNCFTI 169

Query: 321 GALLGACKIHKNVELAELAFGKVI 344
              L AC       LA L  G+ I
Sbjct: 170 SCALIAC-----ARLAALRLGRQI 188


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/542 (38%), Positives = 315/542 (58%), Gaps = 38/542 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++++G+V      +A+ LF +MR +GV  N+VTM+ ++  C     L LG      
Sbjct: 309 VSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDY 368

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV------------------------ 108
             +  + ++ +V N  + M+VKCG V+  R LFD +                        
Sbjct: 369 IDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIA 428

Query: 109 -------PEKGLITWNAMISGYAQNGLATHVLELYREMK--SLGVCPDAVTFVGVLSSCA 159
                  P K +  WN +ISGY Q+G     L ++RE++    G  PD VT +  LS+CA
Sbjct: 429 RDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACA 488

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
            LGA  +G  +   I+      N  L  +LI+MY++ G+++KA  +F  +  K V  W+A
Sbjct: 489 QLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSA 548

Query: 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279
           +I G  +HG GE A++LF +M ++ ++P+   F ++L ACSH+GL D+G   F  M+  Y
Sbjct: 549 MIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVY 608

Query: 280 GLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELA 339
           G+ P  +HY+CMVD+LGRAG L EAL+ IE M + P  +VWGALLGAC IH N+ELAE A
Sbjct: 609 GVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKA 668

Query: 340 FGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHL 399
             +++++EP N G YVLLSN+Y++  + +G+  +R  MR+  LKK+ G S +E+ G VH 
Sbjct: 669 CSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDGTVHE 728

Query: 400 FMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS---DQKNSEEHLNDT--EVHSEKLAI 454
           F+VGD  H  + +IY  LD++   ++ H     +    Q   EE + +   ++HSEK+AI
Sbjct: 729 FIVGDNAHPLSRDIYAKLDEIMARLRSHGYVANTLCMLQFVEEEEMKEKALKLHSEKMAI 788

Query: 455 AFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKD 514
           AFG+I       I ++KNLR+C DCH   K+VSK+  R  ++RD  RFHHF  G CSC+D
Sbjct: 789 AFGLIRADSQQAIRIVKNLRVCRDCHTVAKMVSKVYGRDIVLRDRYRFHHFSGGHCSCQD 848

Query: 515 YW 516
           YW
Sbjct: 849 YW 850



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 108/372 (29%), Positives = 173/372 (46%), Gaps = 40/372 (10%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVD 59
           VFD+ I   +L   +N LI     +S   ++V +F +M  +     N  T   L+    +
Sbjct: 195 VFDQ-IPQPNL-YSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAE 252

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP--EKGLITWN 117
                +G   H + +K     D  V N L+  Y  CG +D    +F+ +    K +++WN
Sbjct: 253 RRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWN 312

Query: 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
           +M++G+ Q G     L+L+  M++ GV P+AVT V V+S+CA     ++G +V   I  N
Sbjct: 313 SMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRN 372

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
               N  + NA I+M+ +CG ++ AR +FD M ++ VVSWT II GY       +A  +F
Sbjct: 373 EMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIF 432

Query: 238 DEM---------------------------------LKSGIRPDGTAFVSVLSACSHAGL 264
           D M                                  KSG RPD    +S LSAC+  G 
Sbjct: 433 DSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGA 492

Query: 265 TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
            D G E+ +G   K  +Q      T ++D+  ++G + +A+E+  S +   D  VW A++
Sbjct: 493 MDIG-EWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHS-IGNKDVFVWSAMI 550

Query: 325 GACKIHKNVELA 336
               +H   E A
Sbjct: 551 AGLAMHGRGEAA 562



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 88/168 (52%), Gaps = 3/168 (1%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH-VLELYREMKSLGVCPDAVTFVGV 154
            ++DY RK+FDQ+P+  L +WN +I   A +      VL   R +      P+  TF  +
Sbjct: 187 SALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVL 246

Query: 155 LSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP--RK 212
           + + A      VG  V        FG + F+ N+LI+ YA CG+L  A  +F+ +    K
Sbjct: 247 IKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNK 306

Query: 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
            +VSW +++ G+   G+ + A+ LF+ M   G+ P+    VSV+SAC+
Sbjct: 307 DIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACA 354


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/513 (40%), Positives = 303/513 (59%), Gaps = 12/513 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+ISGY      SEA+ LF +M   G   N  T   +L  C       LG   H +
Sbjct: 77  VSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSL 136

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K   +    VG+ L+ MY K G +   R++FD +PE+ +++  A+ISGYAQ GL    
Sbjct: 137 VIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEA 196

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+L+R ++  G+  + VT+  VL++ + L A   G +V   +          L N+LI+M
Sbjct: 197 LDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDM 256

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG-IRPDGTA 251
           Y++CG+L  +R IFD MP +TV+SW A++ GY  HG G  AV+LF  M +   ++PD   
Sbjct: 257 YSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVT 316

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKN-KYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
           F++VLS CSH G+ D+GLE FY M N K G +P  EHY C+VDL GRAG++ EA E I+ 
Sbjct: 317 FLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKK 376

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M  EP  A+WG+LLGAC++H+NV + E    +++++E  N G YV+LSN+Y+ A   D +
Sbjct: 377 MPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDV 436

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
             VR +M+E+ + K+PG S++EL   +H F   DR+H +  E++  + +L   ++E    
Sbjct: 437 RTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYV 496

Query: 431 KR-------SDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFI 483
                     D +  E+ L     HSEKLA+AFG+I T  GT + ++KNLRIC DCH F 
Sbjct: 497 PELSCVLYDVDDEQKEKILQG---HSEKLALAFGLICTPGGTPVRIIKNLRICVDCHNFA 553

Query: 484 KLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K +S++  R+  +RD  RFHH   G CSC DYW
Sbjct: 554 KFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 586



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 165/328 (50%), Gaps = 19/328 (5%)

Query: 41  QGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDY 100
           QG+E+       +L  C+    +  G   H   +K   +    +   L+ +Y KC  +  
Sbjct: 4   QGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGD 63

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160
            R++ D++PE+ +++W AMISGY+Q G A+  L L+ EM   G  P+  TF  VL+SC  
Sbjct: 64  ARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTS 123

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
                +G ++   +    F S+ F+ ++L++MYA+ G + +AR +FDG+P + VVS TAI
Sbjct: 124 SSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAI 183

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           I GY   G  E A+ LF  + + G+R +   + SVL+A S     D G +      + + 
Sbjct: 184 ISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQV-----HSHV 238

Query: 281 LQPGPEHY----TCMVDLLGRAGQLNEALELIESMLVEPDGAV--WGALLGACKIH---- 330
           L+     Y      ++D+  + G L  +  + +SM   P+  V  W A+L     H    
Sbjct: 239 LRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSM---PERTVISWNAMLVGYSKHGLGR 295

Query: 331 KNVELAELAFGKVIKLEPMNTGYYVLLS 358
           + VEL +L   +  K++P +  +  +LS
Sbjct: 296 EAVELFKL-MKEENKVKPDSVTFLAVLS 322


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/510 (40%), Positives = 305/510 (59%), Gaps = 6/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+ISGY       EA+ LF  M +  V  +  TM+ ++  C   G + LG   H  
Sbjct: 232 VSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLW 291

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               G   +  + N L+ +Y KCG ++    LF+++P K +I+WN +I GY    L    
Sbjct: 292 IDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEA 351

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI--QANGFGSNPFLNNALI 190
           L L++EM   G  P+ VT + +L +CAHLGA  +G  +   I  +  G  +   L  +LI
Sbjct: 352 LLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLI 411

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MYA+CG+++ A  +F+ +  K++ SW A+I G+ +HG  + +  LF  M K GI+PD  
Sbjct: 412 DMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDI 471

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            FV +LSACSH+G+ D G   F  M   Y + P  EHY CM+DLLG +G   EA E+I  
Sbjct: 472 TFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINM 531

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M +EPDG +W +LL ACK+H NVEL E     +IK+EP N G YVLLSNIY+ A   + +
Sbjct: 532 MEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEV 591

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE---- 426
            + R ++ ++ +KK PG S +E+   VH F++GD+ H +  EIY ML+++E L+++    
Sbjct: 592 AKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFV 651

Query: 427 HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
            D ++   +   E        HSEKLAIAFG+I+T PGT++ ++KNLR+C +CH   KL+
Sbjct: 652 PDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLI 711

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SKI  R+ I RD TRFHHF+ G CSC DYW
Sbjct: 712 SKIYKREIIARDRTRFHHFRDGVCSCNDYW 741



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 120/389 (30%), Positives = 195/389 (50%), Gaps = 36/389 (9%)

Query: 4   ESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL 63
           ++I+  +L + +N +  G+ L+S    A+ L+  M   G+  NS T   +L  C      
Sbjct: 92  KTIQEPNLLI-WNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAF 150

Query: 64  WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS-------------------------- 97
             G   H   +K G DLD  V   L++MYV+ G                           
Sbjct: 151 KEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGY 210

Query: 98  -----VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFV 152
                ++  +KLFD++P K +++WNAMISGYA+ G     LEL+++M    V PD  T V
Sbjct: 211 ASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMV 270

Query: 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK 212
            V+S+CA  G+  +G +V   I  +GFGSN  + NALI++Y++CG L+ A  +F+ +P K
Sbjct: 271 TVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYK 330

Query: 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG-LEY 271
            V+SW  +IGGY      + A+ LF EML+SG  P+    +S+L AC+H G  D G   +
Sbjct: 331 DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIH 390

Query: 272 FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHK 331
            Y  K   G+       T ++D+  + G +  A ++  S+L     + W A++    +H 
Sbjct: 391 VYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSIL-HKSLSSWNAMIFGFAMHG 449

Query: 332 NVELAELAFGKV--IKLEPMNTGYYVLLS 358
             + +   F ++  I ++P +  +  LLS
Sbjct: 450 RADASFDLFSRMRKIGIQPDDITFVGLLS 478



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 124/259 (47%), Gaps = 33/259 (12%)

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
           + Y   +F  + E  L+ WN M  G+A +      L+LY  M SLG+ P++ TF  VL S
Sbjct: 84  LPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKS 143

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
           CA   A   G ++   +   G   + +++ +LI+MY + G L+ A  +FD  P + VVS+
Sbjct: 144 CAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSY 203

Query: 218 TAIIGGYGIHGHGEVAVQLFDE-------------------------------MLKSGIR 246
           TA+I GY   G+ E A +LFDE                               M+K+ +R
Sbjct: 204 TALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 263

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           PD +  V+V+SAC+ +G  + G +    + + +G     +    ++DL  + G+L  A  
Sbjct: 264 PDESTMVTVVSACAQSGSIELGRQVHLWI-DDHGFGSNLKIVNALIDLYSKCGELETACG 322

Query: 307 LIESMLVEPDGAVWGALLG 325
           L E +  + D   W  L+G
Sbjct: 323 LFERLPYK-DVISWNTLIG 340


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/520 (39%), Positives = 317/520 (60%), Gaps = 6/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD  +  T     +NAL+ GY  NS   +A+ L+ +M + G++ +  T+  LL  C   
Sbjct: 364 VFD--LMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRM 421

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H   ++ GL +D  +G  L+++Y+ CG     + LFD +  + L++WN MI
Sbjct: 422 KSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMI 481

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GY+QNGL    + L+R+M S G+ P  +  + V  +C+ L A  +G E+          
Sbjct: 482 AGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLT 541

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            + F+++++I+MYA+ G +  ++ IFD +  K V SW  II GYGIHG G+ A++LF++M
Sbjct: 542 EDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKM 601

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           L+ G++PD   F  +L ACSHAGL + GLEYF  M N + ++P  EHYTC+VD+LGRAG+
Sbjct: 602 LRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGR 661

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           +++AL LIE M  +PD  +W +LL +C+IH N+ L E    K+++LEP     YVL+SN+
Sbjct: 662 IDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNL 721

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDR---NHHQTVEIYRML 417
           ++ +   D + RVR  M++  L+KD G S++E+ G+VH F++GD       +  E +R L
Sbjct: 722 FAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRL 781

Query: 418 D-KLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
           + K+ ++    D          E+ +     HSEKLAI+FG++NT+ G  + V KNLRIC
Sbjct: 782 EVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRIC 841

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           GDCH   K +SK+V+R  +VRD  RFHHF+ G CSC DYW
Sbjct: 842 GDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 881



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 171/348 (49%), Gaps = 6/348 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEI--NSVTMLCLLPICV 58
           +FD++ K     V +N++I GY     V     L  KM+ +  ++  +  T+L +LP+C+
Sbjct: 261 LFDKNDKKN--IVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCL 318

Query: 59  DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
           +   L      H    + GL  +  V N  +  Y +CG++    ++FD +  K + +WNA
Sbjct: 319 ERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNA 378

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           ++ GYAQN      L+LY +M   G+ PD  T   +L +C+ + +   G E+      NG
Sbjct: 379 LLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNG 438

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
              +PF+  +L+++Y  CG    A+ +FDGM  +++VSW  +I GY  +G  + A+ LF 
Sbjct: 439 LAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFR 498

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
           +ML  GI+P   A + V  ACS       G E  +    K  L       + ++D+  + 
Sbjct: 499 QMLSDGIQPYEIAIMCVCGACSQLSALRLGKE-LHCFALKAHLTEDIFVSSSIIDMYAKG 557

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
           G +  +  + +  L E D A W  ++    IH   + A   F K+++L
Sbjct: 558 GCIGLSQRIFDR-LREKDVASWNVIIAGYGIHGRGKEALELFEKMLRL 604



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 151/315 (47%), Gaps = 7/315 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGV-EINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +NA++S Y  N L  +A+S+F ++      + ++ T+ C++  C     L LG   H + 
Sbjct: 68  WNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMA 127

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
            K  L  D  VGN L+ MY KCG V+   K+F+ +PE+ L++WN++I G+++NG      
Sbjct: 128 TKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESF 187

Query: 134 ELYREM--KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
             +REM        PD  T V VL  CA       G+ V       G      +NN+LI+
Sbjct: 188 NAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLID 247

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML--KSGIRPDG 249
           MY++C  L +A+ +FD   +K +VSW ++IGGY           L  +M    + ++ D 
Sbjct: 248 MYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADE 307

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
              ++VL  C       + L+  +G   ++GLQ         +    R G L  + E + 
Sbjct: 308 FTILNVLPVCLERSEL-QSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSS-ERVF 365

Query: 310 SMLVEPDGAVWGALL 324
            ++     + W ALL
Sbjct: 366 DLMDTKTVSSWNALL 380



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 129/256 (50%), Gaps = 5/256 (1%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140
           DF +   ++TMY  CGS    R +FD++  K L  WNA++S Y +N L    + ++ E+ 
Sbjct: 33  DFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELI 92

Query: 141 SLGV-CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNL 199
           S+    PD  T   V+ +CA L    +G  +          S+ F+ NALI MY +CG +
Sbjct: 93  SVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLV 152

Query: 200 KKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML--KSGIRPDGTAFVSVLS 257
           ++A  +F+ MP + +VSW +II G+  +G  + +   F EML  +    PD    V+VL 
Sbjct: 153 EEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLP 212

Query: 258 ACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDG 317
            C+     +KG+   +G+  K GL         ++D+  +   L+EA +L+     + + 
Sbjct: 213 VCAGEEDIEKGMA-VHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEA-QLLFDKNDKKNI 270

Query: 318 AVWGALLGACKIHKNV 333
             W +++G     ++V
Sbjct: 271 VSWNSMIGGYAREEDV 286


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/514 (40%), Positives = 310/514 (60%), Gaps = 19/514 (3%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGV-EINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           + A+ISG V ++   EA+ L+  M++    + N  T+   L        L +G   H   
Sbjct: 218 WTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHI 277

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           ++ GLD D  V   L+ MY KCGS++  R +FD++ E+ +++W  MI  Y +NG      
Sbjct: 278 MRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGF 337

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
            L+R + +  + P+  TF GVL++CA L A  +G ++   +   GF S     +AL++MY
Sbjct: 338 ALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMY 397

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
           ++CG+++ A+++F+ +P+  + SWT+++ GY  HG  + A+  F+ +LKSG +PDG AF+
Sbjct: 398 SKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFI 457

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
            VLSAC+HAGL DKGLEYF+ +K K+GL    +HY C++DLL RAGQ  EA  +I  M +
Sbjct: 458 GVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPI 517

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
           +PD  +W ALLG C+IH N+ELA+ A   + ++EP N   YV L+NIY+ A        +
Sbjct: 518 KPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVTLANIYASAGMRAEEANI 577

Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE------- 426
           R  M  R + K PG S++E++  VH+F VGD +H ++ EI   L +L   ++E       
Sbjct: 578 RETMDSRGIVKKPGMSWIEIRREVHVFSVGDNSHPKSKEILEYLSELSKRMKEVGYVPDT 637

Query: 427 ----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLF 482
               HD     + +  EE+L+    HSEKLA+AFGII+T  GT I V KNLR C DCH  
Sbjct: 638 NFVLHD----VELEQKEENLS---YHSEKLAVAFGIISTPSGTPIKVFKNLRTCVDCHNA 690

Query: 483 IKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           IK +S I  R+ IVRD+ RFH F+ G CSCKDYW
Sbjct: 691 IKFISNITGRKIIVRDSNRFHCFEGGSCSCKDYW 724



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 125/255 (49%), Gaps = 5/255 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  +I  Y+ N    E  +LF  +    +  N  T   +L  C D     LG   H  
Sbjct: 318 VSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAY 377

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            V+ G D   S  + L+ MY KCG ++  + +F+ +P+  L +W +++ GYAQ+G     
Sbjct: 378 MVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKA 437

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI-QANGFGSNPFLNNALIN 191
           L  +  +   G  PD + F+GVLS+CAH G    GLE    I + +G          +I+
Sbjct: 438 LHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIID 497

Query: 192 MYARCGNLKKARAIFDGMPRKT-VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           + AR G   +A +I + MP K     W A++GG  IHG+ E+A +    + +  I P+  
Sbjct: 498 LLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFE--IEPENP 555

Query: 251 A-FVSVLSACSHAGL 264
           A +V++ +  + AG+
Sbjct: 556 ATYVTLANIYASAGM 570



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 144/336 (42%), Gaps = 47/336 (13%)

Query: 25  NSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSV 84
            S + EAV L  ++ +    I     L LL  C+    L  G   H   +K    +   +
Sbjct: 101 QSRLREAVQLLYRIEKPYASI----YLTLLKFCLKQRALKEGKQVHA-HIKTSGSIGLYI 155

Query: 85  GNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGV 144
            N L+ MY KCGS+    K+FD++  + L +WN MISGY + G       L+ +M +   
Sbjct: 156 SNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPN--- 212

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN--------------------------- 177
             D  ++  ++S C         LE+ + +Q +                           
Sbjct: 213 -RDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGK 271

Query: 178 ---------GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
                    G  S+  +  +L++MY +CG++++AR IFD M  + VVSWT +I  Y  +G
Sbjct: 272 KIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNG 331

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY 288
             E    LF  ++ S I P+   F  VL+AC+     D G +  +    + G        
Sbjct: 332 RREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQ-IHAYMVRVGFDSFSSAA 390

Query: 289 TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
           + +V +  + G +  A  + E +L +PD   W +LL
Sbjct: 391 SALVHMYSKCGDIENAKSVFE-ILPQPDLFSWTSLL 425



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 126/295 (42%), Gaps = 33/295 (11%)

Query: 125 QNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF 184
           Q+ L   V  LYR  K     P A  ++ +L  C    A   G +V   I+ +G     +
Sbjct: 101 QSRLREAVQLLYRIEK-----PYASIYLTLLKFCLKQRALKEGKQVHAHIKTSG-SIGLY 154

Query: 185 LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
           ++N L++MYA+CG+L  A  +FD M  + + SW  +I GY   G+ E A  LFD+M    
Sbjct: 155 ISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNR- 213

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
              D  ++ +++S C      ++ LE  Y +  K+      +   C +     A     +
Sbjct: 214 ---DNFSWTAIISGCVQHNRPEEALE-LYRLMQKHDYSKSNK---CTISSALAASAAIPS 266

Query: 305 LEL-------IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
           L +       I  M ++ D  VW +LL       ++E A   F K+ + + ++  +  ++
Sbjct: 267 LHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVS--WTTMI 324

Query: 358 SNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYV----------ELKGRVHLFMV 402
                  R  +G    R +M    +  D  ++ V          +L  ++H +MV
Sbjct: 325 HTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMV 379


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/509 (41%), Positives = 302/509 (59%), Gaps = 6/509 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+ISG V N LV E+  LF ++       +  T++ LL  C     L  G   H  
Sbjct: 298 VSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGC 357

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++   + +  +   ++ +Y KCGS+     +F+++ ++ +ITW AM+ G AQNG A   
Sbjct: 358 AIR-SFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDA 416

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+ +M+  G+  ++VTFV ++ SCAHLG+   G  +   +   GF  +     AL++M
Sbjct: 417 LRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDM 476

Query: 193 YARCGNLKKARAIFD-GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           YA+CG +  A  IF  G   K VV W ++I GYG+HGHG  AV ++ +M++ G++P+ T 
Sbjct: 477 YAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTT 536

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+S+LSACSH+ L ++G+  F  M+  + ++P  +HY C+VDLL RAG+  EA  LIE M
Sbjct: 537 FLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKM 596

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
             +P  AV  ALL  C+ HKN+ L      K++ L+ MN G Y++LSNIY+EAR  D + 
Sbjct: 597 PFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIMLSNIYAEARRWDKVD 656

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH---- 427
            +R +MR R LKK PGYS VE    VH F  GD +H    EIY  L+ L + V+      
Sbjct: 657 YIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNWEEIYHFLESLRSAVETSGYVP 716

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           D +      + E  +     HSE+LAIAFG++ T  G+ I + KNLR+CGDCH   K +S
Sbjct: 717 DTSCVLRDVDEEMKVRMLWGHSERLAIAFGLLTTPAGSLIRITKNLRVCGDCHTVTKYIS 776

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KIV R+ IVRDA RFHHF +G CSC DYW
Sbjct: 777 KIVKREIIVRDANRFHHFSNGECSCGDYW 805



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 162/324 (50%), Gaps = 5/324 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+  +   L +C NA++ GY+ +    E + LFG MR + +E++S +    L  C   
Sbjct: 86  VFDQFFQPKGL-LC-NAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASS 143

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
               +GM      V+ G++ +  VG+ +++  VK G +   +++FD +P K ++ WN++I
Sbjct: 144 LDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSII 203

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GY Q G      +L+ EM   G+ P  +T   ++ +C  +G   +G  +   +   G G
Sbjct: 204 GGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLG 263

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           ++  +  + ++MY++ G+++ AR +F  MP + +VSW A+I G   +G    +  LF  +
Sbjct: 264 NDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRL 323

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           ++S    D T  VS+L  CS       G +  +G   +   +      T +VDL  + G 
Sbjct: 324 VRSSGGFDLTTIVSLLQGCSQTASLATG-KILHGCAIR-SFESNLILSTAIVDLYSKCGS 381

Query: 301 LNEALELIESMLVEPDGAVWGALL 324
           L +A  +   M  + +   W A+L
Sbjct: 382 LKQATFVFNRM-KDRNVITWTAML 404



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 121/258 (46%), Gaps = 2/258 (0%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   +   L  D  V   L+  Y    S++  R +FDQ  +   +  NAM+ GY Q+G  
Sbjct: 52  HAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQSGRY 111

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              LEL+  M+S  +  D+ +    L +CA    + +G+E+       G   N F+ +++
Sbjct: 112 RETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSM 171

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           I+   + G + +A+ +FDGMP K VV W +IIGGY   G  +VA QLF EM  SGI+P  
Sbjct: 172 ISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSP 231

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
               S++ AC   G    G +  +G     GL       T  VD+  + G +  A  +  
Sbjct: 232 ITMTSLIQACGGIGNLKLG-KCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFY 290

Query: 310 SMLVEPDGAVWGALLGAC 327
            M    +   W A++  C
Sbjct: 291 KMPTR-NLVSWNAMISGC 307


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/520 (40%), Positives = 301/520 (57%), Gaps = 40/520 (7%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE I      V +N++++GY  N    +A+ +  +M + G + +  TM  L+P     
Sbjct: 176 VFDEMIWKD--VVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMP----- 228

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
                                 +V N          +V Y  K+F  +  K LI+WN MI
Sbjct: 229 ----------------------AVAN------TSSENVLYVEKIFVNLERKNLISWNVMI 260

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
             Y +N L T  ++LY +M+   V PDA+TF  VL +C  L A  +G  + + ++     
Sbjct: 261 RVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLC 320

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            N  L N+LI+MYARCG L  A+ +FD M  + V SWT++I  YG+ G G  AV LF EM
Sbjct: 321 PNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEM 380

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           L SG  PD  AFV++LSACSH+GL D+G  YF  M + Y + P  EHY C+VDLLGRAG+
Sbjct: 381 LNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGR 440

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           ++EA  +I+ M +EP+  VW  LL +C++  N+++  LA   +++L P  +GYYVLLSNI
Sbjct: 441 VDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYYVLLSNI 500

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y++A     +  +R +M+ ++++K PG S VEL  +VH F+ GD +H Q+ EIY  L  L
Sbjct: 501 YAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGDTSHPQSKEIYEELGVL 560

Query: 421 ENLVQEHDGTKRSDQKNSEEHLNDTE----VHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
              ++E      +D    +    D E    VHSEKLAI F ++NT    +I + KNLR+C
Sbjct: 561 VAKMKELGYVPETDSALHDVEEEDKEGHLAVHSEKLAIVFALLNTQE-YQIRITKNLRVC 619

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           GDCH+  KL+SKIV+R+ IVRD  RFHHFK G CSC DYW
Sbjct: 620 GDCHIAAKLISKIVEREIIVRDTNRFHHFKDGVCSCGDYW 659



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 146/326 (44%), Gaps = 37/326 (11%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE   S    V YN +I  YV N    + + +F +M   G   ++ T  C+L  C   
Sbjct: 75  VFDE--MSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCS 132

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G+  H   +K GLD +  VGN L+ MY KCG +   R++FD++  K +++WN+M+
Sbjct: 133 ENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMV 192

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GYA N      LE+ REM+  G  PD  T   ++ + A+  + +V L VE+        
Sbjct: 193 AGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENV-LYVEK-------- 243

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
                                   IF  + RK ++SW  +I  Y  +     AV L+ +M
Sbjct: 244 ------------------------IFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQM 279

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            K  + PD   F SVL AC        G    +    K  L P       ++D+  R G 
Sbjct: 280 EKCRVEPDAITFASVLPACGDLSALLLG-RRIHEYVEKKKLCPNLLLENSLIDMYARCGC 338

Query: 301 LNEALELIESMLVEPDGAVWGALLGA 326
           L++A  + + M    D A W +L+ A
Sbjct: 339 LDDAKRVFDRMKFR-DVASWTSLISA 363



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 149/312 (47%), Gaps = 27/312 (8%)

Query: 83  SVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL 142
           S+G  LM  Y  CG     RK+FD++ ++ ++ +N MI  Y  N      L ++REM + 
Sbjct: 54  SLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNG 113

Query: 143 GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202
           G  PD  T+  VL +C+       GL +   +   G   N F+ N LI MY +CG L +A
Sbjct: 114 GFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEA 173

Query: 203 RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262
           R +FD M  K VVSW +++ GY  +   + A+++  EM   G +PDG    S++ A   A
Sbjct: 174 RRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAV--A 231

Query: 263 GLTDKGLEY----FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL---IESMLVEP 315
             + + + Y    F  ++ K  +      +  M+ +  +     +A++L   +E   VEP
Sbjct: 232 NTSSENVLYVEKIFVNLERKNLIS-----WNVMIRVYMKNSLPTQAVDLYLQMEKCRVEP 286

Query: 316 DGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSN----IYSEARNLDG 369
           D   + ++L AC      +L+ L  G+ I   +E       +LL N    +Y+    LD 
Sbjct: 287 DAITFASVLPACG-----DLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDD 341

Query: 370 IMRV--RMMMRE 379
             RV  RM  R+
Sbjct: 342 AKRVFDRMKFRD 353



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 2/145 (1%)

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            NP L   L+  YA CG     R +FD M  + VV +  +I  Y  +   +  + +F EM
Sbjct: 51  QNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREM 110

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           +  G RPD   +  VL ACS +     GL   +G   K GL         ++ + G+ G 
Sbjct: 111 VNGGFRPDNYTYPCVLKACSCSENLRYGL-LIHGDVLKVGLDFNLFVGNGLIAMYGKCGC 169

Query: 301 LNEALELIESMLVEPDGAVWGALLG 325
           L EA  + + M+ + D   W +++ 
Sbjct: 170 LFEARRVFDEMIWK-DVVSWNSMVA 193


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/568 (38%), Positives = 326/568 (57%), Gaps = 60/568 (10%)

Query: 6   IKSTHLTVCYN-ALISGYVLNSLVS--------------EAVSLFGKMREQGVEINSVTM 50
           I STH T+ ++   +  ++ N+L+                 +S+F +MR  GV+ +  T 
Sbjct: 8   ISSTHPTLHFSHPTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTF 67

Query: 51  LCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP- 109
             LL     P  L LG   H   ++FGL +D  V   L++MY  CG++ + R++FD++P 
Sbjct: 68  PFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQ 127

Query: 110 ------------------------------EKGLITWNAMISGYAQNGLATHVLELYREM 139
                                         E+ +I+W+ MI+GY + G     L L+REM
Sbjct: 128 PDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREM 187

Query: 140 KSLGVC---PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196
           + LGV    P+  T  GVL++C  LGA   G      I   G   +  L  ALI+MYA+C
Sbjct: 188 QMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKC 247

Query: 197 GNLKKARAIFDGM-PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSV 255
           G+++KA  +F  + P K V++W+A+I G  +HG  E  V LF +M+  G+RP+   F++V
Sbjct: 248 GSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAV 307

Query: 256 LSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEP 315
             AC H GL  +G +Y   M   Y + P  +HY CMVDL GRAG++ EA  +++SM +EP
Sbjct: 308 FCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEP 367

Query: 316 DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRM 375
           D  VWGALL   ++H ++E  ELA  K+I+LEP N+G YVLLSN+Y++    + +  VR 
Sbjct: 368 DVLVWGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRD 427

Query: 376 MMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK-LENL-VQEHDGTKRS 433
           +M    +KK PG S +E+ G +H F VGD +H +T +I+ ML++ LE L V+ + G  + 
Sbjct: 428 LMETMGIKKVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKE 487

Query: 434 -----DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
                D++  E  L+   +HSEKLA+A+G + TSPGT I ++KNLRIC DCH+ IK++SK
Sbjct: 488 VLLDLDEEGKELALS---LHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISK 544

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           + DR+ IVRD  RFHHF  G CSC+DYW
Sbjct: 545 VFDREIIVRDCNRFHHFTQGLCSCRDYW 572


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/537 (38%), Positives = 310/537 (57%), Gaps = 35/537 (6%)

Query: 10  HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCC 69
           H  + +N+LI+G V   L  +A+ LF +MR   V ++   +  +L +C  P Y   G   
Sbjct: 342 HDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELL 401

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVD------------------------------ 99
           H   +K G+     VGN ++TMY KCG  D                              
Sbjct: 402 HGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDI 461

Query: 100 -YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC 158
              R  FD +PE+ ++TWN+M+S Y QNG +   L+LY  M+S GV PD +TF   + +C
Sbjct: 462 GKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRAC 521

Query: 159 AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWT 218
           A L    +G++V       G   N  + N+++ MY+RCG +K+A+  FD +  K ++SW 
Sbjct: 522 ADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWN 581

Query: 219 AIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278
           A++  +  +G G   +  F++MLK+  +P+  ++VSVLS CSH GL  +G  YF  M   
Sbjct: 582 AMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRV 641

Query: 279 YGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAEL 338
           +G+ P  EH++CMVDLLGRAG L +A +LIE M  +P+  VW ALLG+C++H ++ LAE 
Sbjct: 642 FGISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALLGSCRVHHDLRLAET 701

Query: 339 AFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVH 398
           A  K+++L+   +  YVLLSN+YSE+  LD +  +R +M+ + ++   G S++E+  RVH
Sbjct: 702 AAKKLMELDVEGSEGYVLLSNMYSESGELDNVADMRKLMKVKGIRTSRGCSWIEVDNRVH 761

Query: 399 LFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGI 458
           +F V + +H Q  E+Y  L+++  ++++   T +     S  H    + HSEKLA AFG+
Sbjct: 762 VFTVDETSHPQIKEVYLKLEEMMKMIED---TGKYITVESSVH-RSKKYHSEKLAFAFGL 817

Query: 459 INTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDY 515
           +N      I VMKNLR+C DCHL IKL+S +  R+ I+RD  RFHHFK G CSCKDY
Sbjct: 818 LNLPSWMPIHVMKNLRVCDDCHLVIKLLSLVTSRELIMRDGYRFHHFKDGICSCKDY 874



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 153/345 (44%), Gaps = 33/345 (9%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N LIS +  +    + +++F +M  QG   N +T   +L  C     L  G   H  
Sbjct: 244 VSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHAR 303

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++    LD   GN L+ MY KCG +D  +++F  + E   I+WN++I+G    GL    
Sbjct: 304 ILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDA 363

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+ +M+   V  D      +L  C+     S G  +      +G GS+  + NA+I M
Sbjct: 364 LILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITM 423

Query: 193 YARC-------------------------------GNLKKARAIFDGMPRKTVVSWTAII 221
           YA+C                               G++ KAR  FD MP + +V+W +++
Sbjct: 424 YAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSML 483

Query: 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281
             Y  +G  E  ++L+  M  +G++PD   F + + AC+   +   G++       K+GL
Sbjct: 484 STYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQ-VVTHATKFGL 542

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
                    +V +  R G + EA    +S + + D   W A+L A
Sbjct: 543 SLNVSVANSIVTMYSRCGLIKEAKNTFDS-IDDKDLISWNAMLAA 586



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 159/361 (44%), Gaps = 37/361 (10%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM----REQGVEINSVTMLCLLPI 56
           +FDE       +V +  +ISGY  N   S +   F  M     + G   +  +   ++  
Sbjct: 96  LFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKA 155

Query: 57  CVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVD----------------- 99
           C   G   L +  H +  K G  ++  + N ++ MYVKCG VD                 
Sbjct: 156 CGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCW 215

Query: 100 ----YGR----------KLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
               YG           ++F+++PE+  ++WN +IS ++Q+G     L ++ EM + G  
Sbjct: 216 NSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFS 275

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P+ +T+  VLS+CA       G  +  +I       +    N LI+MYA+CG L  A+ +
Sbjct: 276 PNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRV 335

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           F  +     +SW ++I G    G GE A+ LF++M +S +  D     ++L  CS     
Sbjct: 336 FKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYA 395

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
             G E  +G   K G+         ++ +  + G  ++A +L+  ++   +   W A++ 
Sbjct: 396 STG-ELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKA-DLVFRLMPLRNTISWTAMIT 453

Query: 326 A 326
           A
Sbjct: 454 A 454



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 118/279 (42%), Gaps = 45/279 (16%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPE--KGLITWNAMISGYAQNGLATHVLELY----REM 139
           N ++   V    +    KLFD++P   K  ++W  MISGY+QNG  +   E +    R+ 
Sbjct: 78  NTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDT 137

Query: 140 KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNL 199
              G   D  +F  V+ +C  LG   + +++   +   GFG    + N+++ MY +CG++
Sbjct: 138 NDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDV 197

Query: 200 K-------------------------------KARAIFDGMPRKTVVSWTAIIGGYGIHG 228
                                           KA  IF+ MP +  VSW  +I  +  HG
Sbjct: 198 DLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHG 257

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEY---FYGMKNKYGLQPGP 285
            G   + +F EM   G  P+   + SVLSAC+       G         M++   L  G 
Sbjct: 258 FGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFG- 316

Query: 286 EHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
                ++D+  + G L+ A  + +S L E D   W +L+
Sbjct: 317 ---NGLIDMYAKCGCLDLAKRVFKS-LREHDHISWNSLI 351



 Score = 42.0 bits (97), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 82/191 (42%), Gaps = 11/191 (5%)

Query: 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS 216
           S  H   H +  ++  Q+  +G  S+ FL N L++MY+ CG    A  +F     + + +
Sbjct: 18  SFTHKSPH-IARKLHAQLILSGLDSSLFLLNNLLHMYSNCGLTHDAFQVFQETHHRNIFT 76

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIR-PDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           W  +I           A +LFDEM    +R  D  ++ +++S  S  G   +  E F  M
Sbjct: 77  WNTMIRALVSSSRMSDAEKLFDEM---PVRVKDSVSWTTMISGYSQNGFHSRSFETFSLM 133

Query: 276 ---KNKYGLQPGPEHYTCMVDLLGRAGQLNEALE---LIESMLVEPDGAVWGALLGACKI 329
               N  G    P  +T ++   G  G    A++   L+  +    +  +  +++G    
Sbjct: 134 IRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVK 193

Query: 330 HKNVELAELAF 340
             +V+LAE  F
Sbjct: 194 CGDVDLAETVF 204


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/512 (43%), Positives = 300/512 (58%), Gaps = 44/512 (8%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGK-MREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +NA+I+G+    L   A+ +F + +  QG   ++ TM  +LP                
Sbjct: 190 VSWNAMIAGFARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILP---------------- 233

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                      ++GN       K   + + R++FD +  K LI+WNAM++ YA N     
Sbjct: 234 -----------AMGN------AKPDDIRFVRRVFDNMQFKELISWNAMLAVYANNEFHVK 276

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            +EL+  M+   V PD++T   VL  C  L A SVG  + + I+      N  L NAL++
Sbjct: 277 AVELFMLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEIIKRKNMCPNLLLENALMD 336

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA CG LK AR IFD M  + V+SWT+II  YG HGHG  AV LF++ML  G+ PD  A
Sbjct: 337 MYASCGCLKDAREIFDLMSARDVISWTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIA 396

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           FV+VL+ACSHAGL   G  YF  M ++Y + P  EHYTCMVDLLGRAG +NEA + I +M
Sbjct: 397 FVAVLAACSHAGLLADGKHYFDSMTSRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTM 456

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
           L+EP+  VWGALL AC+IH N+++  +A   +  L P  TGYYVLLSN+Y+ A     + 
Sbjct: 457 LIEPNERVWGALLQACRIHSNMDIGLVAADNLFSLVPEQTGYYVLLSNMYARAGRWADVT 516

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ------ 425
            VR +M  + +KK PG S VEL  +VH F +GDR H Q+  IY  LD+L   ++      
Sbjct: 517 SVRSVMVNKGIKKFPGTSIVELGDQVHTFHIGDRCHPQSEMIYHKLDELLGKIRGMGYNP 576

Query: 426 EHDGTKRS-DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
           E + T    ++++ E+HL+   VHSEKLAIAF ++NTSPGT I V  NLR C DCHL  K
Sbjct: 577 EVEATLHDVEEEDKEDHLS---VHSEKLAIAFLLLNTSPGTIIRVTMNLRTCSDCHLAAK 633

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           L+S I  R+ +++D  R HH   G CSC DYW
Sbjct: 634 LISIITCREIVLKDTNRIHHIVQGVCSCGDYW 665



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 158/359 (44%), Gaps = 44/359 (12%)

Query: 7   KSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEI--NSVTMLCLLPICVDPGYLW 64
           +S   TVC+N LI     +SL  +A+ LF  MR +G     +  T    L  C     L 
Sbjct: 81  RSRTTTVCFNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSCSASKDLL 140

Query: 65  LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYA 124
           LG+  H    K  LD +  V +  ++MY +CG  +   ++FD +P + +++WNAMI+G+A
Sbjct: 141 LGLQIHSAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFA 200

Query: 125 QNGLATHVLELYREMKSL-GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP 183
           + GL    +E++++   L G  PDA T  G+L                           P
Sbjct: 201 RVGLFDRAIEVFKQFVVLQGSMPDAGTMAGIL---------------------------P 233

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
            + N      A+  +++  R +FD M  K ++SW A++  Y  +     AV+LF  M K 
Sbjct: 234 AMGN------AKPDDIRFVRRVFDNMQFKELISWNAMLAVYANNEFHVKAVELFMLMEKD 287

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
            + PD     +VL  C        G      +K K  + P       ++D+    G L +
Sbjct: 288 EVEPDSITLATVLPPCGELSAFSVGKRIHEIIKRK-NMCPNLLLENALMDMYASCGCLKD 346

Query: 304 ALELIESMLVEPDGAVWGALLGACKIH----KNVELAELAFGKVIKLEPMNTGYYVLLS 358
           A E+ + M    D   W +++ A   H    + V+L E   G+   LEP +  +  +L+
Sbjct: 347 AREIFDLMSAR-DVISWTSIISAYGKHGHGREAVDLFEKMLGQ--GLEPDSIAFVAVLA 402



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 116/270 (42%), Gaps = 23/270 (8%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKG-----LITWNAMISGYAQNGLATHVLELYREMKSL 142
           L+  Y  C ++     + +     G      + +N +I     + L    L L+  M+  
Sbjct: 56  LIQAYAACSALPLAHTVLESSSPDGRSRTTTVCFNVLIRALTASSLHRDALVLFASMRPR 115

Query: 143 GVC--PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
           G    PD  T+   L SC+      +GL++   +       N ++ ++ I+MY+RCG  +
Sbjct: 116 GPACFPDHYTYPLALKSCSASKDLLLGLQIHSAVAKLRLDRNVYVAHSAISMYSRCGRPE 175

Query: 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE-MLKSGIRPDGTAFVSVLSAC 259
            A  +FDGMP + VVSW A+I G+   G  + A+++F + ++  G  PD      +L A 
Sbjct: 176 DAYRVFDGMPHRDVVSWNAMIAGFARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILPAM 235

Query: 260 SHAGLTDKGL--EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE---LIESMLVE 314
            +A   D       F  M+ K  +      +  M+ +        +A+E   L+E   VE
Sbjct: 236 GNAKPDDIRFVRRVFDNMQFKELIS-----WNAMLAVYANNEFHVKAVELFMLMEKDEVE 290

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVI 344
           PD      +L  C      EL+  + GK I
Sbjct: 291 PDSITLATVLPPCG-----ELSAFSVGKRI 315


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/509 (39%), Positives = 309/509 (60%), Gaps = 5/509 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +N+L+SG      +   ++ F +MR E G + N VT+L ++  C D G L  G   H 
Sbjct: 129 VSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHG 188

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + VK G+     V N L+ MY K G +D   +LF+++P + L++WN+M+  +  NG A  
Sbjct: 189 VVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEK 248

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            ++L+  MK  G+ PD  T V +L +C   G       +   I   GF ++  +  AL+N
Sbjct: 249 GMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLN 308

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +YA+ G L  +  IF+ +  +  ++WTA++ GY +H  G  A++LFD M+K G+  D   
Sbjct: 309 LYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVT 368

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F  +LSACSH+GL ++G +YF  M   Y ++P  +HY+CMVDLLGR+G+L +A ELI+SM
Sbjct: 369 FTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSM 428

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            +EP   VWGALLGAC+++ NVEL +    +++ L+P +   Y++LSNIYS A       
Sbjct: 429 PMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDAS 488

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
           +VR +M+ERRL ++PG S++E   ++H F+VGD+ H ++ EI+  L++L   ++E     
Sbjct: 489 KVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAP 548

Query: 432 RSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           +++      + E  ++    HSEKLAIAFG++ T  G  +++ KNLRICGDCH   K  S
Sbjct: 549 KTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFAS 608

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +  R  I+RD+ RFHHF  G CSC+DYW
Sbjct: 609 LLEKRTIIIRDSKRFHHFADGLCSCRDYW 637



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 143/266 (53%), Gaps = 6/266 (2%)

Query: 69  CHCICVKFGLDLDFS---VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
           C  I  +    L++S   +G+ L++MY K G  +  ++LFD++P K L++WN+++SG + 
Sbjct: 81  CSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSG 140

Query: 126 NGLATHVLELYREMKS-LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF 184
            G     L  +  M++  G  P+ VT + V+S+CA +GA   G  +   +   G      
Sbjct: 141 RGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAK 200

Query: 185 LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
           + N+LINMY + G L  A  +F+ MP +++VSW +++  +  +G+ E  + LF+ M ++G
Sbjct: 201 VVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAG 260

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
           I PD    V++L AC+  GL  +  E  +   ++ G        T +++L  + G+LN +
Sbjct: 261 INPDQATMVALLRACTDTGLGRQA-ESIHAYIHRCGFNADIIIATALLNLYAKLGRLNAS 319

Query: 305 LELIESMLVEPDGAVWGALLGACKIH 330
            ++ E  + + D   W A+L    +H
Sbjct: 320 EDIFEE-IKDRDRIAWTAMLAGYAVH 344


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/523 (40%), Positives = 311/523 (59%), Gaps = 10/523 (1%)

Query: 1   VFDE-SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD 59
           +FDE  IK     V +NA+ISGY       EA+ LF +M +  V  +  TM+ ++  C  
Sbjct: 176 MFDEIPIKDV---VSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQ 232

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              + LG   H      G   +  + N L+ +Y+KCG V+    LF+ +  K +I+WN +
Sbjct: 233 SASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTL 292

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI--QAN 177
           I GY    L    L L++EM   G  P+ VT + +L +CAHLGA  +G  +   I  +  
Sbjct: 293 IGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLK 352

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
           G  +      +LI+MYA+CG+++ A+ +FD +  +++ SW A+I G+ +HG    A  +F
Sbjct: 353 GVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIF 412

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
             M K+ I PD   FV +LSACSH+G+ D G   F  MK  Y + P  EHY CM+DLLG 
Sbjct: 413 SRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGH 472

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
           +G   EA E+I +M +EPDG +W +LL ACK+H NVEL E     +IK+EP N G YVLL
Sbjct: 473 SGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLL 532

Query: 358 SNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML 417
           SNIY+ A   + + ++R ++ ++ +KK PG S +E+   VH F++GD+ H +  EIY ML
Sbjct: 533 SNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGML 592

Query: 418 DKLENLVQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
           +++E L++E     D ++   +   E        HSEKLAIAFG+I+T PGT++ ++KNL
Sbjct: 593 EEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNL 652

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           R+C +CH   KL+SKI  R+ I RD TRFHHF+ G CSC DYW
Sbjct: 653 RVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 695



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/389 (31%), Positives = 193/389 (49%), Gaps = 36/389 (9%)

Query: 4   ESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL 63
           E+I+  +L + +N +  G+ L+S    A+ L+  M   G+  N  T   LL  C      
Sbjct: 46  ETIQEPNLLI-WNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAF 104

Query: 64  WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQ---------------- 107
             G   H   +K G DLD  V   L++MYV+ G ++  RK+FDQ                
Sbjct: 105 REGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGY 164

Query: 108 ---------------VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFV 152
                          +P K +++WNAMISGYA+ G     LEL++EM    V PD  T V
Sbjct: 165 ASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMV 224

Query: 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK 212
            V+S+CA   +  +G +V   I  +GFGSN  + NALI++Y +CG ++ A  +F+G+  K
Sbjct: 225 SVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYK 284

Query: 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-Y 271
            V+SW  +IGGY      + A+ LF EML+SG  P+    +S+L AC+H G  + G   +
Sbjct: 285 DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIH 344

Query: 272 FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHK 331
            Y  K   G+     H T ++D+  + G +  A ++ +S+L     + W A++    +H 
Sbjct: 345 VYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSS-WNAMIFGFAMHG 403

Query: 332 NVELAELAFGKVIK--LEPMNTGYYVLLS 358
               A   F ++ K  +EP +  +  LLS
Sbjct: 404 RANAAFDIFSRMRKNEIEPDDITFVGLLS 432



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 122/257 (47%), Gaps = 33/257 (12%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           Y   +F+ + E  L+ WN M  G+A +      L LY  M SLG+ P+  TF  +L SCA
Sbjct: 40  YAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCA 99

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
              A   G ++   +   G+  + +++ +LI+MY + G L+ AR +FD    + VVS+TA
Sbjct: 100 KSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTA 159

Query: 220 IIGGYG--------------------------IHGHGEV-----AVQLFDEMLKSGIRPD 248
           +I GY                           I G+ E      A++LF EM+K+ +RPD
Sbjct: 160 LITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPD 219

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
            +  VSV+SAC+ +   + G +  +   + +G     +    ++DL  + G++  A  L 
Sbjct: 220 ESTMVSVVSACAQSASIELGRQ-VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLF 278

Query: 309 ESMLVEPDGAVWGALLG 325
           E  L   D   W  L+G
Sbjct: 279 EG-LSYKDVISWNTLIG 294


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/510 (40%), Positives = 302/510 (59%), Gaps = 6/510 (1%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
            V + A+ISGY      SEA+ LF +M   G   N  T   +L  C       LG   H +
Sbjct: 544  VSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSL 603

Query: 73   CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             +K   +    VG+ L+ MY K G +   R++FD +PE+ +++  A+ISGYAQ GL    
Sbjct: 604  VIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEA 663

Query: 133  LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            L+L+R ++  G+  + VT+  VL++ + L A   G +V   +          L N+LI+M
Sbjct: 664  LDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDM 723

Query: 193  YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG-IRPDGTA 251
            Y++CG+L  +R IFD MP +TV+SW A++ GY  HG G  AV+LF  M +   ++PD   
Sbjct: 724  YSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVT 783

Query: 252  FVSVLSACSHAGLTDKGLEYFYGMKN-KYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            F++VLS CSH G+ D+GLE FY M N K G +P  EHY C+VDL GRAG++ EA E I+ 
Sbjct: 784  FLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKK 843

Query: 311  MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
            M  EP  A+WG+LLGAC++H+NV + E    +++++E  N G YV+LSN+Y+ A   D +
Sbjct: 844  MPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDV 903

Query: 371  MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
              VR +M+E+ + K+PG S++EL   +H F   DR+H +  E++  + +L   ++E    
Sbjct: 904  RTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYV 963

Query: 431  KRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
                      + E+     + HSEKLA+AFG+I T  GT + ++KNLRIC DCH F K +
Sbjct: 964  PELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICVDCHNFAKFL 1023

Query: 487  SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            S++  R+  +RD  RFHH   G CSC DYW
Sbjct: 1024 SRVYGREVSLRDKNRFHHIVGGTCSCGDYW 1053



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 167/332 (50%), Gaps = 19/332 (5%)

Query: 37  KMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCG 96
           +M  QG+E+       +L  C+    +  G   H   +K   +    +   L+ +Y KC 
Sbjct: 467 EMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCR 526

Query: 97  SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS 156
            +   R++ D++PE+ +++W AMISGY+Q G A+  L L+ EM   G  P+  TF  VL+
Sbjct: 527 CLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLT 586

Query: 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS 216
           SC       +G ++   +    F S+ F+ ++L++MYA+ G + +AR +FDG+P + VVS
Sbjct: 587 SCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVS 646

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
            TAII GY   G  E A+ LF  + + G+R +   + SVL+A S     D G +      
Sbjct: 647 CTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQV----- 701

Query: 277 NKYGLQPGPEHY----TCMVDLLGRAGQLNEALELIESMLVEPDGAV--WGALLGACKIH 330
           + + L+     Y      ++D+  + G L  +  + +SM   P+  V  W A+L     H
Sbjct: 702 HSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSM---PERTVISWNAMLVGYSKH 758

Query: 331 ----KNVELAELAFGKVIKLEPMNTGYYVLLS 358
               + VEL +L   +  K++P +  +  +LS
Sbjct: 759 GLGREAVELFKL-MKEENKVKPDSVTFLAVLS 789



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 8/200 (4%)

Query: 119 MISGYAQNGLATHVLELYREMKS----LGVCPDAVTFVG---VLSSCAHLGAHSVGLEVE 171
           ++S +  N      L   R++K     +G+    V F G   VL+ C    A   G  V 
Sbjct: 441 LLSTFPANSPDLKTLCSNRQLKEALLEMGIQGLEVEFQGYDSVLTECISQTAIREGQRVH 500

Query: 172 QQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGE 231
             +    +    +L   LI +Y +C  L  AR + D MP + VVSWTA+I GY   G+  
Sbjct: 501 AHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYAS 560

Query: 232 VAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCM 291
            A+ LF EML SG  P+   F +VL++C+ +     G +  + +  K   +      + +
Sbjct: 561 EALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQ-IHSLVIKTSFESHIFVGSSL 619

Query: 292 VDLLGRAGQLNEALELIESM 311
           +D+  +AG++ EA  + + +
Sbjct: 620 LDMYAKAGKICEARRVFDGL 639


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/509 (39%), Positives = 309/509 (60%), Gaps = 5/509 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +N+L+SG      +   ++ F +MR E G + N VT+L ++  C D G L  G   H 
Sbjct: 186 VSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHG 245

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + VK G+     V N L+ MY K G +D   +LF+++P + L++WN+M+  +  NG A  
Sbjct: 246 VVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEK 305

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            ++L+  MK  G+ PD  T V +L +C   G       +   I   GF ++  +  AL+N
Sbjct: 306 GMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLN 365

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +YA+ G L  +  IF+ +  +  ++WTA++ GY +H  G  A++LFD M+K G+  D   
Sbjct: 366 LYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVT 425

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F  +LSACSH+GL ++G +YF  M   Y ++P  +HY+CMVDLLGR+G+L +A ELI+SM
Sbjct: 426 FTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSM 485

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            +EP   VWGALLGAC+++ NVEL +    +++ L+P +   Y++LSNIYS A       
Sbjct: 486 PMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDAS 545

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
           +VR +M+ERRL ++PG S++E   ++H F+VGD+ H ++ EI+  L++L   ++E     
Sbjct: 546 KVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAP 605

Query: 432 RSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           +++      + E  ++    HSEKLAIAFG++ T  G  +++ KNLRICGDCH   K  S
Sbjct: 606 KTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFAS 665

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +  R  I+RD+ RFHHF  G CSC+DYW
Sbjct: 666 LLEKRTIIIRDSKRFHHFADGLCSCRDYW 694



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 143/266 (53%), Gaps = 6/266 (2%)

Query: 69  CHCICVKFGLDLDFS---VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
           C  I  +    L++S   +G+ L++MY K G  +  ++LFD++P K L++WN+++SG + 
Sbjct: 138 CSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSG 197

Query: 126 NGLATHVLELYREMKS-LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF 184
            G     L  +  M++  G  P+ VT + V+S+CA +GA   G  +   +   G      
Sbjct: 198 RGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAK 257

Query: 185 LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
           + N+LINMY + G L  A  +F+ MP +++VSW +++  +  +G+ E  + LF+ M ++G
Sbjct: 258 VVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAG 317

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
           I PD    V++L AC+  GL  +  E  +   ++ G        T +++L  + G+LN +
Sbjct: 318 INPDQATMVALLRACTDTGLGRQA-ESIHAYIHRCGFNADIIIATALLNLYAKLGRLNAS 376

Query: 305 LELIESMLVEPDGAVWGALLGACKIH 330
            ++ E  + + D   W A+L    +H
Sbjct: 377 EDIFEE-IKDRDRIAWTAMLAGYAVH 401


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/514 (40%), Positives = 301/514 (58%), Gaps = 15/514 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++A+I+ +    L  EA+  + KM+ +GV  N  T   +L  C   G L  G   H  
Sbjct: 288 VSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQ 347

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +  G  +    G  L+ +Y   GS+D  R LFDQ+  +    W  +I GY++ G  T V
Sbjct: 348 ILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGV 407

Query: 133 LELYREMKSLGVCPDA-VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
           LELYREMK+    P   + +  V+S+CA LGA +   +    I+A+G  S+  L  +L+N
Sbjct: 408 LELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVN 467

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY+R GNL+ AR +FD M  +  ++WT +I GY  HG   +A+ L+ EM   G  P    
Sbjct: 468 MYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELT 527

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+ VL ACSHAGL ++G + F  +++ Y + P   HY+C++DLL RAG+L++A ELI +M
Sbjct: 528 FMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAM 587

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            VEP+   W +LLGA +IHK+V+ A  A G++ KL+P++   YVLLSN+++   NL G+ 
Sbjct: 588 PVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMA 647

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
            VR  M  R +KK  G S++E+  ++H F VGD +H +  EI+  L +L   ++E     
Sbjct: 648 SVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIKEAGYV- 706

Query: 432 RSDQKNSEEHLNDT---------EVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLF 482
                 SEE L+D           +HSEKLAIAFG+I T+PGT + +   LRIC DCH  
Sbjct: 707 ----PESEEVLHDVGEKEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNTLRICHDCHSA 762

Query: 483 IKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +K +S I  R+ IVRD++RFH F+ G CSC DYW
Sbjct: 763 VKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 796



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/316 (32%), Positives = 160/316 (50%), Gaps = 16/316 (5%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC-IC 73
           + ++++ Y  N     A+ L+ +M    ++ N V    +L  C     L  G   H  I 
Sbjct: 92  WGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIEALEEGKAIHSRIS 148

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP-EKGLITWNAMISGYAQNGLATHV 132
              GL LD  + N L+TMY KCGS++  ++LF+++   + + +WNAMI+ YAQ+G     
Sbjct: 149 GTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEA 208

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + LY +M    V P   TF  VLS+C++LG    G ++   I + G   +  L NAL+ M
Sbjct: 209 IRLYEDMD---VEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTM 265

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YARC  L  A  IF  +PR+ VVSW+A+I  +      + A++ + +M   G+RP+   F
Sbjct: 266 YARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTF 325

Query: 253 VSVLSACSHAGLTDKGL---EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
            SVL AC+  G    G    +   G   K  L  G    T +VDL    G L+EA  L +
Sbjct: 326 ASVLLACASVGDLRAGRAVHDQILGNGYKITLVNG----TALVDLYTSYGSLDEARSLFD 381

Query: 310 SMLVEPDGAVWGALLG 325
            +    +G +W  L+G
Sbjct: 382 QIENRDEG-LWTVLIG 396



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 168/347 (48%), Gaps = 10/347 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NA+I+ Y  +    EA+ L+  M    VE +  T   +L  C + G L  G   H +  
Sbjct: 192 WNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQGRKIHALIS 248

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             G +LD S+ N L+TMY +C  +D   K+F ++P + +++W+AMI+ +A+  L    +E
Sbjct: 249 SRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIE 308

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
            Y +M+  GV P+  TF  VL +CA +G    G  V  QI  NG+        AL+++Y 
Sbjct: 309 FYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYT 368

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
             G+L +AR++FD +  +    WT +IGGY   GH    ++L+ EM  +   P      S
Sbjct: 369 SYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYS 428

Query: 255 -VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
            V+SAC+  G      +    ++   G+       T +V++  R G L  A ++ + M  
Sbjct: 429 CVISACASLGAFADARQAHSDIEAD-GMISDFVLATSLVNMYSRWGNLESARQVFDKM-S 486

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKL---EPMNTGYYVLL 357
             D   W  L+     H    LA L   K ++L   EP    + V+L
Sbjct: 487 SRDTLAWTTLIAGYAKHGEHGLA-LGLYKEMELEGAEPSELTFMVVL 532



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/277 (31%), Positives = 144/277 (51%), Gaps = 11/277 (3%)

Query: 84  VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG 143
           +GN ++  Y KCGSV   R  FD +  K   +W +M++ YAQNG     L+LY+ M    
Sbjct: 60  LGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRMD--- 116

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ-ANGFGSNPFLNNALINMYARCGNLKKA 202
           + P+ V +  VL +CA + A   G  +  +I    G   +  L N+L+ MYA+CG+L+ A
Sbjct: 117 LQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDA 176

Query: 203 RAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261
           + +F+ M  R++V SW A+I  Y   GH E A++L+++M    + P    F SVLSACS+
Sbjct: 177 KRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSN 233

Query: 262 AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWG 321
            GL D+G +  + + +  G +        ++ +  R   L++A ++ +  L   D   W 
Sbjct: 234 LGLLDQGRK-IHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQR-LPRRDVVSWS 291

Query: 322 ALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           A++ A       + A + F   ++LE +   YY   S
Sbjct: 292 AMIAAFAETDLFDEA-IEFYSKMQLEGVRPNYYTFAS 327



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 6/162 (3%)

Query: 168 LEVEQQIQ---ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGY 224
           LE  +QI    +    +N FL N ++  Y +CG++  AR  FD + RK   SW +++  Y
Sbjct: 40  LESVRQIHDRISGAASANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAY 99

Query: 225 GIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG 284
             +GH   A+ L+  M    ++P+   + +VL AC+     ++G      +    GL+  
Sbjct: 100 AQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLD 156

Query: 285 PEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
                 ++ +  + G L +A  L E M      + W A++ A
Sbjct: 157 VILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAA 198


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/510 (41%), Positives = 302/510 (59%), Gaps = 6/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+ISGY       EA+ LF +M +  V  +  T + +L  C   G + LG   H  
Sbjct: 162 VSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSW 221

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               G D +  + N L+ +Y KCG V+    LF  +  K +I+WN +I GY    L    
Sbjct: 222 VDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEA 281

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI--QANGFGSNPFLNNALI 190
           L L++EM   G  P+ VT + VL +CAHLGA  +G  +   I  +  G  +   L  +LI
Sbjct: 282 LLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLI 341

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MYA+CG+++ A  +F+ M  K++ SW A+I G+ +HG  + +  LF  M K GI PD  
Sbjct: 342 DMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDI 401

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            FV +LSACSH+G+ D G   F  M   Y + P  EHY CM+DLLG +G   EA E+I +
Sbjct: 402 TFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINT 461

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M +EPDG +W +LL ACK+H NVELAE     +IK+EP N   Y+LLSNIY+ A   + +
Sbjct: 462 MEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDV 521

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH--- 427
            R+R ++  + +KK PG S +E+   V  F+VGD+ H Q  EIY ML+++E L++E    
Sbjct: 522 ARIRALLNGKCMKKVPGCSSIEVDSVVFEFVVGDKFHPQNREIYGMLEEMEVLLEEAGFV 581

Query: 428 -DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
            D ++   +   E        HSEKLAIAFG+I+T PGT++ ++KNLR+C +CH   KL+
Sbjct: 582 PDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLL 641

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SKI  R+ + RD TRFHHF+ G CSC DYW
Sbjct: 642 SKIYKREIVARDRTRFHHFRDGVCSCNDYW 671



 Score =  194 bits (493), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 122/378 (32%), Positives = 189/378 (50%), Gaps = 35/378 (9%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N +I G+ L+S    +++L+  M   G+  NS T   LL  C        G   H   +
Sbjct: 32  WNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAKSKTFTEGQQIHGQVL 91

Query: 75  KFGLDLDFSVGNCLMTMYVKC-------------------------------GSVDYGRK 103
           K G DLD  V   L++MYV+                                G +   +K
Sbjct: 92  KLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITGYASRGDIRSAQK 151

Query: 104 LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163
           LFD++P K +++WNAMISGYA+ G     LEL+ EM  + V PD  T+V VLS+CAH G+
Sbjct: 152 LFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGS 211

Query: 164 HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGG 223
             +G +V   +  +GF SN  + NALI++Y++CG ++ A  +F G+  K V+SW  +IGG
Sbjct: 212 IELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGG 271

Query: 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQ 282
           Y      + A+ LF EML+SG  P+    +SVL AC+H G  D G   + Y  K   G+ 
Sbjct: 272 YTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVT 331

Query: 283 PGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGK 342
                 T ++D+  + G +  A ++  SML     + W A++    +H   + +   F +
Sbjct: 332 NASSLRTSLIDMYAKCGDIEAAHQVFNSML-HKSLSSWNAMIFGFAMHGRADASFDLFSR 390

Query: 343 V--IKLEPMNTGYYVLLS 358
           +  I +EP +  +  LLS
Sbjct: 391 MRKIGIEPDDITFVGLLS 408



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 125/257 (48%), Gaps = 33/257 (12%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           Y   +F+ + E   + WN MI G+A +      L LY  M SLG+ P++ TF  +L SCA
Sbjct: 16  YATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCA 75

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
                + G ++  Q+   GF  + +++ +LI+MY +   L+ A  +FD    + VVS+TA
Sbjct: 76  KSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTA 135

Query: 220 IIGGYG--------------------------IHGHGEV-----AVQLFDEMLKSGIRPD 248
           +I GY                           I G+ E      A++LF+EM+K  +RPD
Sbjct: 136 LITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPD 195

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
            + +V+VLSAC+H+G  + G +  +   + +G     +    ++DL  + G++  A  L 
Sbjct: 196 ESTYVTVLSACAHSGSIELGRQ-VHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLF 254

Query: 309 ESMLVEPDGAVWGALLG 325
           +  L   D   W  L+G
Sbjct: 255 QG-LSYKDVISWNTLIG 270


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/508 (38%), Positives = 302/508 (59%), Gaps = 17/508 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+I+GY  +   +EA++LF +M++QG++ +++     +  C     L  G   H  
Sbjct: 505 VSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQ 564

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               G   D S+GN L+++Y +CG V      FDQ+  K  ++WN+++SG+AQ+G     
Sbjct: 565 SCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEA 624

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L ++ +M   G+  ++ TF   +S+ A++    +G ++   I+  G+ S   ++NALI +
Sbjct: 625 LNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITL 684

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG +               +SW ++I GY  HG G  A++LF++M +  + P+   F
Sbjct: 685 YAKCGTIDD-------------ISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTF 731

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           V VLSACSH GL D+G+ YF  M   + L P PEHY C+VDLLGR+G L+ A   +E M 
Sbjct: 732 VGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMP 791

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           ++PD  VW  LL AC +HKN+++ E A   +++LEP ++  YVL+SN+Y+ +   D   R
Sbjct: 792 IQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNMYAVSGKWDCRDR 851

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
            R MM++R +KK+PG S+VE+   VH F  GD+NH +   IY  L  L+    E+    R
Sbjct: 852 TRQMMKDRGVKKEPGRSWVEVDNSVHAFFAGDQNHPRADMIYEYLRGLDFRAAENGYVPR 911

Query: 433 SDQKNSEEHLNDTE----VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
            +   S+  +   +    +HSE+LAIAFG+++ +  T + V KNLR+C DCH +IK VSK
Sbjct: 912 CNSLLSDAEIRQKDPTEIIHSERLAIAFGLLSLTSSTPLYVFKNLRVCEDCHNWIKHVSK 971

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           I DR  IVRD+ RFHHFK G CSCKDYW
Sbjct: 972 ITDRVIIVRDSYRFHHFKVGSCSCKDYW 999



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 171/344 (49%), Gaps = 30/344 (8%)

Query: 6   IKSTH-LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLW 64
           IK+ H   +CY  L +       ++++  +F +M+ +G+  N  T   +L  C   G   
Sbjct: 403 IKTAHEFFLCYGQLDN-------LNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATD 455

Query: 65  LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYA 124
           LG   H   +K G   +  V + L+ MY K G +D+  K+F ++ E  +++W AMI+GY 
Sbjct: 456 LGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYT 515

Query: 125 QNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF 184
           Q+   T  L L++EM+  G+  D + F   +S+CA + A   G ++  Q   +G+  +  
Sbjct: 516 QHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLS 575

Query: 185 LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
           + NAL+++YARCG +++A A FD +  K  VSW +++ G+   G+ E A+ +F +M K+G
Sbjct: 576 IGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAG 635

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN-- 302
           +  +   F S +SA ++      G +  +GM  K G     E    ++ L  + G ++  
Sbjct: 636 LEINSFTFGSAVSAAANIANVRIGKQ-IHGMIRKTGYDSETEVSNALITLYAKCGTIDDI 694

Query: 303 ----------------EALELIESML---VEPDGAVWGALLGAC 327
                           EAL+L E M    V P+   +  +L AC
Sbjct: 695 SWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSAC 738



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 147/332 (44%), Gaps = 34/332 (10%)

Query: 16  NALISGYVLNSLVSEAVSLFGKMR---------------EQGVEINSVTMLC--LLPICV 58
           N LI  Y  N  +S A  +F  ++               + G E  ++ + C  +L  C 
Sbjct: 203 NPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIVLSACT 262

Query: 59  DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
              +   G   H + +K G   +  V N L+T+Y + G++    ++F  + ++  +++N+
Sbjct: 263 KVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNS 322

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           +ISG AQ G     L L+++M      PD VT   +LS+CA +GA   G +        G
Sbjct: 323 LISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAG 382

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
             S+  +  +L+++Y +C ++K A   F                 YG   +   + Q+F 
Sbjct: 383 MTSDIVVEGSLLDLYVKCSDIKTAHEFF---------------LCYGQLDNLNKSFQIFT 427

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
           +M   GI P+   + S+L  C+  G TD G E  +    K G Q      + ++D+  + 
Sbjct: 428 QMQIEGIVPNQFTYPSILKTCTTLGATDLG-EQIHTQVLKTGFQFNVYVSSVLIDMYAKH 486

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           G+L+ AL++    L E D   W A++     H
Sbjct: 487 GKLDHALKIFRR-LKENDVVSWTAMIAGYTQH 517



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 126/280 (45%), Gaps = 45/280 (16%)

Query: 38  MREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS 97
           M + GV  NS T L LL  C++    + G+                    L+  Y+  G 
Sbjct: 72  MEQHGVRANSQTFLWLLEGCLNSRSFYDGLK-------------------LIDFYLAFGD 112

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
           ++    +FD++P + L  WN + + +    L   V  L+R M +  V  D   F  VL  
Sbjct: 113 LNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRG 172

Query: 158 CAHLGAHSVGLEVEQQIQA----NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
           C+    ++V     +QI A    +GF S+ F+ N LI++Y + G L  A+ +F+ +  + 
Sbjct: 173 CS---GNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARD 229

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
            VSW A+I G   +G+ E A+ LF ++              VLSAC+     + G +  +
Sbjct: 230 SVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEFFEFGKQ-LH 274

Query: 274 GMKNKYGLQPGPEHYTC--MVDLLGRAGQLNEALELIESM 311
           G+  K G     E Y C  +V L  R+G L+ A ++   M
Sbjct: 275 GLVLKQGF--SSETYVCNALVTLYSRSGNLSSAEQIFHCM 312


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/522 (42%), Positives = 311/522 (59%), Gaps = 17/522 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +     V +  +I+GYV N  V  A  LF  M E+    N V+   +L      
Sbjct: 275 LFDEMPRRN--VVSWTTMITGYVQNQQVDIARKLFEVMPEK----NEVSWTAMLK----- 323

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVG-NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
           GY   G       +   + +   V  N ++  + + G V   R++FDQ+ EK   TW+AM
Sbjct: 324 GYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAM 383

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I  Y + GL    LEL+R M+  G+ P+  + + VLS CA L     G E+  Q+  + F
Sbjct: 384 IKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQF 443

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             + ++ + L++MY +CGNL KA+ +FD    K VV W +II GY  HG G  A+++F +
Sbjct: 444 DLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHD 503

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M  SGI PD   FV VLSACS+ G   KGLE F  M+ KY ++   EHY CMVDLLGRAG
Sbjct: 504 MHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAG 563

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
           +LNEA++LIE M +E D  +WGALLGAC+ H  ++LAE+A  K++ LEP N G ++LLSN
Sbjct: 564 KLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSN 623

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRN-HHQTVEIYRMLD 418
           IY+     D +  +R  MR+RR+ K PG S++ ++ +VH F  GD + H +  EI R+L+
Sbjct: 624 IYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILE 683

Query: 419 KLENLVQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLR 474
            L  L++E     D +      + EE +   E HSEKLA+A+G++    G  I VMKNLR
Sbjct: 684 WLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGMPIRVMKNLR 743

Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +CGDCH  IKL++K+  R+ I+RDA RFHHFK G CSC+DYW
Sbjct: 744 VCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 165/360 (45%), Gaps = 64/360 (17%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE ++  ++ + +N++++GY  N    EA ++F KM E+    N+++           
Sbjct: 120 VFDE-MRDKNI-ISWNSIVAGYFQNKRPQEAQNMFDKMSER----NTIS----------- 162

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
              W                     N L++ Y+  G ++  R++FD++PE+ +++W AM+
Sbjct: 163 ---W---------------------NGLVSGYINNGMINEAREVFDRMPERNVVSWTAMV 198

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GY + G+ +    L+ +M    V    V   G+L       A  +   + ++       
Sbjct: 199 RGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEK------- 251

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            +      +I  Y + G L +AR +FD MPR+ VVSWT +I GY  +   ++A +LF+ M
Sbjct: 252 -DVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVM 310

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC--MVDLLGRA 298
            +     +  ++ ++L   ++ G  D+  E F  M       P      C  M+   G+ 
Sbjct: 311 PEK----NEVSWTAMLKGYTNCGRLDEASELFNAM-------PIKSVVACNAMILCFGQN 359

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           G++ +A ++ + M  E D   W A++   +  K +EL  L   ++++ E +   +  L+S
Sbjct: 360 GEVPKARQVFDQMR-EKDEGTWSAMIKVYE-RKGLELDALELFRMMQREGIRPNFPSLIS 417



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 138/326 (42%), Gaps = 53/326 (16%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+T Y + G ++  R +FD++ +K +I+WN++++GY QN        ++ +M      
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE---- 157

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN----NALINMYARCGNLKK 201
            + +++ G++S   + G  +   EV        F   P  N     A++  Y + G + +
Sbjct: 158 RNTISWNGLVSGYINNGMINEAREV--------FDRMPERNVVSWTAMVRGYVKEGMISE 209

Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI---------------- 245
           A  +F  MP K VVSWT ++GG    G  + A +LFD M +  +                
Sbjct: 210 AETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRL 269

Query: 246 -----------RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
                      R +  ++ ++++        D   + F  M  K  +      +T M+  
Sbjct: 270 VEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVS-----WTAMLKG 324

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
               G+L+EA EL  +M ++   A   A++     +  V  A   F    ++   + G +
Sbjct: 325 YTNCGRLDEASELFNAMPIKSVVAC-NAMILCFGQNGEVPKARQVFD---QMREKDEGTW 380

Query: 355 VLLSNIYS-EARNLDGIMRVRMMMRE 379
             +  +Y  +   LD +   RMM RE
Sbjct: 381 SAMIKVYERKGLELDALELFRMMQRE 406


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/514 (40%), Positives = 301/514 (58%), Gaps = 15/514 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++A+I+ +    L  EA+  + KM+ +GV  N  T   +L  C   G L  G   H  
Sbjct: 287 VSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQ 346

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +  G  +    G  L+ +Y   GS+D  R LFDQ+  +    W  +I GY++ G  T V
Sbjct: 347 ILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGV 406

Query: 133 LELYREMKSLGVCPDA-VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
           LELYREMK+    P   + +  V+S+CA LGA +   +    I+A+G  S+  L  +L+N
Sbjct: 407 LELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVN 466

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY+R GNL+ AR +FD M  +  ++WT +I GY  HG   +A+ L+ EM   G  P    
Sbjct: 467 MYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELT 526

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+ VL ACSHAGL ++G + F  +++ Y + P   HY+C++DLL RAG+L++A ELI +M
Sbjct: 527 FMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAM 586

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            VEP+   W +LLGA +IHK+V+ A  A G++ KL+P++   YVLLSN+++   NL G+ 
Sbjct: 587 PVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMA 646

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
            VR  M  R +KK  G S++E+  ++H F VGD +H +  EI+  L +L   ++E     
Sbjct: 647 SVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIKEAGYV- 705

Query: 432 RSDQKNSEEHLNDT---------EVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLF 482
                 SEE L+D           +HSEKLAIAFG+I T+PGT + +   LRIC DCH  
Sbjct: 706 ----PESEEVLHDVGEKEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNTLRICHDCHSA 761

Query: 483 IKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +K +S I  R+ IVRD++RFH F+ G CSC DYW
Sbjct: 762 VKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 795



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 104/315 (33%), Positives = 160/315 (50%), Gaps = 15/315 (4%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC-IC 73
           + ++++ Y  N     A+ L+ +M    ++ N V    +L  C     L  G   H  I 
Sbjct: 92  WGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIKALEEGKAIHSRIS 148

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
              GL LD  + N L+TMY KCGS++  ++LF+++  + + +WNAMI+ YAQ+G     +
Sbjct: 149 GTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAI 208

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
            LY +M    V P   TF  VLS+C++LG    G ++   I + G   +  L NAL+ MY
Sbjct: 209 RLYEDMD---VEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMY 265

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
           ARC  L  A  IF  +PR+ VVSW+A+I  +      + A++ + +M   G+RP+   F 
Sbjct: 266 ARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFA 325

Query: 254 SVLSACSHAGLTDKGL---EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
           SVL AC+  G    G    +   G   K  L  G    T +VDL    G L+EA  L + 
Sbjct: 326 SVLLACASVGDLRAGRAVHDQILGNGYKITLVNG----TALVDLYTSYGSLDEARSLFDQ 381

Query: 311 MLVEPDGAVWGALLG 325
           +    +G +W  L+G
Sbjct: 382 IENRDEG-LWTVLIG 395



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 168/347 (48%), Gaps = 10/347 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NA+I+ Y  +    EA+ L+  M    VE +  T   +L  C + G L  G   H +  
Sbjct: 191 WNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQGRKIHALIS 247

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             G +LD S+ N L+TMY +C  +D   K+F ++P + +++W+AMI+ +A+  L    +E
Sbjct: 248 SRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIE 307

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
            Y +M+  GV P+  TF  VL +CA +G    G  V  QI  NG+        AL+++Y 
Sbjct: 308 FYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYT 367

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
             G+L +AR++FD +  +    WT +IGGY   GH    ++L+ EM  +   P      S
Sbjct: 368 SYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYS 427

Query: 255 -VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
            V+SAC+  G      +    ++   G+       T +V++  R G L  A ++ + M  
Sbjct: 428 CVISACASLGAFADARQAHSDIEAD-GMISDFVLATSLVNMYSRWGNLESARQVFDKM-S 485

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKL---EPMNTGYYVLL 357
             D   W  L+     H    LA L   K ++L   EP    + V+L
Sbjct: 486 SRDTLAWTTLIAGYAKHGEHGLA-LGLYKEMELEGAEPSELTFMVVL 531



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 143/276 (51%), Gaps = 10/276 (3%)

Query: 84  VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG 143
           +GN ++  Y KCGSV   R  FD +  K   +W +M++ YAQNG     L+LY+ M    
Sbjct: 60  LGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRMD--- 116

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ-ANGFGSNPFLNNALINMYARCGNLKKA 202
           + P+ V +  VL +CA + A   G  +  +I    G   +  L N+L+ MYA+CG+L+ A
Sbjct: 117 LQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDA 176

Query: 203 RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262
           + +F+ M  ++V SW A+I  Y   GH E A++L+++M    + P    F SVLSACS+ 
Sbjct: 177 KRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNL 233

Query: 263 GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGA 322
           GL D+G +  + + +  G +        ++ +  R   L++A ++ +  L   D   W A
Sbjct: 234 GLLDQGRK-IHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQR-LPRRDVVSWSA 291

Query: 323 LLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           ++ A       + A + F   ++LE +   YY   S
Sbjct: 292 MIAAFAETDLFDEA-IEFYSKMQLEGVRPNYYTFAS 326



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 80/194 (41%), Gaps = 37/194 (19%)

Query: 168 LEVEQQIQ---ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGY 224
           LE  +QI    +    +N FL N ++  Y +CG++  ARA FD + RK   SW +++  Y
Sbjct: 40  LESVRQIHDRISGAASANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAY 99

Query: 225 GIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQ-- 282
             +GH   A+ L+  M    ++P+   + +VL AC+     ++G      +    GL+  
Sbjct: 100 AQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLD 156

Query: 283 -----------------------------PGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
                                             +  M+    ++G   EA+ L E M V
Sbjct: 157 VILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDV 216

Query: 314 EPDGAVWGALLGAC 327
           EP    + ++L AC
Sbjct: 217 EPSVRTFTSVLSAC 230


>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
          Length = 602

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/512 (39%), Positives = 310/512 (60%), Gaps = 12/512 (2%)

Query: 16  NALISGYV---LNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD-PGYLWLGMCCHC 71
           N LI  +    ++SL   A + F  M    V  N  T   LL  C   PG   +G+  H 
Sbjct: 92  NTLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHA 151

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKC---GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
             +KFG   D  V N L+ MY  C   G +   R +FD++P++  +TW+AMI GY + GL
Sbjct: 152 AALKFGFATDQYVSNTLIHMY-SCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGL 210

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
           ++  +EL+REM++ GV  D VT +GVL++   LGA  +   V + ++  G G +  L NA
Sbjct: 211 SSDAVELFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNA 270

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           LI+  A+CG++  A A+F+GM +++VVSWT++I    + G G+ AV++F+EM  +G+ PD
Sbjct: 271 LIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPD 330

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
             AF+ VL+ACSHAG+ D+G  YF  MK +YG++P  EHY CMVD+ GRAG +  A+E +
Sbjct: 331 DVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFV 390

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
            +M ++P+  +W +L+ AC+ H  +EL E     ++   P +   Y++LSN+++  +   
Sbjct: 391 RTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNVFALTQRWK 450

Query: 369 GIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHD 428
               +R  M +R +KK PG S VEL G VH F+ GD +H Q  +IYRM++++   ++   
Sbjct: 451 EKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIYRMVEEMARELRRVG 510

Query: 429 GTKRSDQK----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
               + +     + E+     + HSEKLAIAF ++ T PGT++ V+KNLR+C DCH  IK
Sbjct: 511 HIAATSEVLLDLDEEDKEGALQWHSEKLAIAFALLRTPPGTQVRVVKNLRVCSDCHAAIK 570

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +S++  R+ +VRD +RFH FK G CSCKD+W
Sbjct: 571 CISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 123/244 (50%), Gaps = 6/244 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD   K + +T  ++A+I GYV   L S+AV LF +M+  GV+ + VT++ +L    D 
Sbjct: 186 VFDRMPKESAVT--WSAMIGGYVRGGLSSDAVELFREMQANGVQADEVTVIGVLAAATDL 243

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L L         + G+    ++ N L+    KCG VD    +F+ + ++ +++W ++I
Sbjct: 244 GALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVI 303

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
              A  G     + ++ EMK  GV PD V F+GVL++C+H G    G      ++   +G
Sbjct: 304 DALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVE-YG 362

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLF 237
             P + +   +++M+ R G +++A      MP +   V W +++     HG  E+   + 
Sbjct: 363 IEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESIT 422

Query: 238 DEML 241
             +L
Sbjct: 423 RSLL 426


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/522 (42%), Positives = 311/522 (59%), Gaps = 17/522 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +     V +  +I+GYV N  V  A  LF  M E+    N V+   +L      
Sbjct: 275 LFDEMPRRN--VVSWTTMITGYVQNQQVDIARKLFEVMPEK----NEVSWTAMLK----- 323

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVG-NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
           GY   G       +   + +   V  N ++  + + G V   R++FDQ+ EK   TW+AM
Sbjct: 324 GYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAM 383

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I  Y + GL    LEL+R M+  G+ P+  + + VLS CA L     G E+  Q+  + F
Sbjct: 384 IKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQF 443

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             + ++ + L++MY +CGNL KA+ +FD    K VV W +II GY  HG G  A+++F +
Sbjct: 444 DLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHD 503

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M  SGI PD   FV VLSACS+ G   KGLE F  M+ KY ++   EHY CMVDLLGRAG
Sbjct: 504 MHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAG 563

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
           +LNEA++LIE M +E D  +WGALLGAC+ H  ++LAE+A  K++ LEP N G ++LLSN
Sbjct: 564 KLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSN 623

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRN-HHQTVEIYRMLD 418
           IY+     D +  +R  MR+RR+ K PG S++ ++ +VH F  GD + H +  EI R+L+
Sbjct: 624 IYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILE 683

Query: 419 KLENLVQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLR 474
            L  L++E     D +      + EE +   E HSEKLA+A+G++    G  I VMKNLR
Sbjct: 684 WLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGMPIRVMKNLR 743

Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +CGDCH  IKL++K+  R+ I+RDA RFHHFK G CSC+DYW
Sbjct: 744 VCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 165/360 (45%), Gaps = 64/360 (17%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE ++  ++ + +N++++GY  N    EA ++F KM E+    N+++           
Sbjct: 120 VFDE-MRDKNI-ISWNSIVAGYFQNKRPQEAQNMFDKMSER----NTIS----------- 162

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
              W                     N L++ Y+  G ++  R++FD++PE+ +++W AM+
Sbjct: 163 ---W---------------------NGLVSGYINNGMINEAREVFDRMPERNVVSWTAMV 198

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GY + G+ +    L+ +M    V    V   G+L       A  +   + ++       
Sbjct: 199 RGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEK------- 251

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            +      +I  Y + G L +AR +FD MPR+ VVSWT +I GY  +   ++A +LF+ M
Sbjct: 252 -DVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVM 310

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC--MVDLLGRA 298
            +     +  ++ ++L   ++ G  D+  E F  M       P      C  M+   G+ 
Sbjct: 311 PEK----NEVSWTAMLKGYTNCGRLDEASELFNAM-------PIKSVVACNAMILCFGQN 359

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           G++ +A ++ + M  E D   W A++   +  K +EL  L   ++++ E +   +  L+S
Sbjct: 360 GEVPKARQVFDQMR-EKDEGTWSAMIKVYE-RKGLELDALELFRMMQREGIRPNFPSLIS 417



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 138/326 (42%), Gaps = 53/326 (16%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+T Y + G ++  R +FD++ +K +I+WN++++GY QN        ++ +M      
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE---- 157

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN----NALINMYARCGNLKK 201
            + +++ G++S   + G  +   EV        F   P  N     A++  Y + G + +
Sbjct: 158 RNTISWNGLVSGYINNGMINEAREV--------FDRMPERNVVSWTAMVRGYVKEGMISE 209

Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI---------------- 245
           A  +F  MP K VVSWT ++GG    G  + A +LFD M +  +                
Sbjct: 210 AETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRL 269

Query: 246 -----------RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
                      R +  ++ ++++        D   + F  M  K  +      +T M+  
Sbjct: 270 VEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVS-----WTAMLKG 324

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
               G+L+EA EL  +M ++   A   A++     +  V  A   F    ++   + G +
Sbjct: 325 YTNCGRLDEASELFNAMPIKSVVAC-NAMILCFGQNGEVPKARQVFD---QMREKDEGTW 380

Query: 355 VLLSNIYS-EARNLDGIMRVRMMMRE 379
             +  +Y  +   LD +   RMM RE
Sbjct: 381 SAMIKVYERKGLELDALELFRMMQRE 406


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/516 (40%), Positives = 320/516 (62%), Gaps = 14/516 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPI--CVDPGYLWLGMCCH 70
           V +N++I  Y  +    +A++L+  M  +G EI+  T+  +L    CV+   L  G+  H
Sbjct: 207 VSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVED--LSGGLQFH 264

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGS-VDYGRKLFDQVPEKGLITWNAMISGYAQNG-L 128
              +K G + +  VG+ L+ MY KCG+ +   RK+F+++    L+ WN MISGY+QN  L
Sbjct: 265 AKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKEL 324

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF-LNN 187
           +   LE +R+M+  G  PD  +FV  +S+C++L + S G +       +   SN   +NN
Sbjct: 325 SVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNN 384

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           AL+ MY++CGNL+ AR +F  MP+   V+  +II GY  HG G  ++ LF++ML + I P
Sbjct: 385 ALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAP 444

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
                VS+LSAC+H G  ++G +YF  MK+ +G++P  EHY+CM+DLLGRAG+L+EA  L
Sbjct: 445 TSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERL 504

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNL 367
           I++M   P  A W ALLGAC+ + N+ELAE A  + ++LEP N   Y++L+++YS AR  
Sbjct: 505 IDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKW 564

Query: 368 DGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH 427
           +   R+R +MR+R ++K PG S++EL  RVH+F+  D +H +  EI+  LD++   ++  
Sbjct: 565 EEAARIRKLMRDRGIRKKPGCSWIELNKRVHVFVAEDNSHPRIKEIHMYLDEMFVKMKRA 624

Query: 428 ---DGTKRSDQKNSEEHLNDTEV----HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCH 480
                 + +  K+ E    + E+    HSEKLA+AFG++ T  G  ++V+KNLRICGDCH
Sbjct: 625 GYVPDVRWAFVKDDETGEQEKEIMLAHHSEKLAVAFGLLFTKHGEPLLVVKNLRICGDCH 684

Query: 481 LFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
             IK +S I  R+  VRDA RFH F+ G CSC DYW
Sbjct: 685 NAIKFMSAIARRKITVRDAYRFHCFEDGRCSCGDYW 720



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 174/386 (45%), Gaps = 43/386 (11%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N LI+ Y        A+SLFG+MRE G+ ++  T   ++  C +  ++ L    H +
Sbjct: 106 VSFNTLINAYADRGDTLSALSLFGEMREMGLVMDGFTFSGVITACCN--HVGLIRQLHSL 163

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE--KGLITWNAMISGYAQNGLAT 130
               G D   SV N L+T Y K G ++    +F+ + E  +  ++WN+MI  Y Q+    
Sbjct: 164 AFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGL 223

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             L LYR+M   G   D  T   VL++ + +   S GL+   +    GF  N  + + LI
Sbjct: 224 KALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLI 283

Query: 191 NMYARCG-NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV-AVQLFDEMLKSGIRPD 248
           +MYA+CG  + ++R +F+ +    +V W  +I GY  +    V A++ F +M ++G  PD
Sbjct: 284 DMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPD 343

Query: 249 GTAFVSVLSACSHAGLTDKGLEY-------------------FYGMKNKYG--------L 281
             +FV  +SACS+     +G ++                      M +K G         
Sbjct: 344 DCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLF 403

Query: 282 QPGPEHYTCMVDLL----GRAGQLNEALELIESML---VEPDGAVWGALLGACKIHKNVE 334
           Q  P+H T  ++ +     + G   E+L L E ML   + P      ++L AC     VE
Sbjct: 404 QRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVE 463

Query: 335 LAELAFG---KVIKLEPMNTGYYVLL 357
             +  F     +  +EP    Y  ++
Sbjct: 464 EGKKYFNMMKDIFGIEPEAEHYSCMI 489



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 128/261 (49%), Gaps = 17/261 (6%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+  Y K   +     LFDQ+P+  L+++N +I+ YA  G     L L+ EM+ +G+ 
Sbjct: 78  NALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLV 137

Query: 146 PDAVTFVGVLSSCA-HLG----AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
            D  TF GV+++C  H+G     HS+         ++GF S   + N+L+  Y++ G L+
Sbjct: 138 MDGFTFSGVITACCNHVGLIRQLHSLAF-------SSGFDSYVSVKNSLLTYYSKNGILE 190

Query: 201 KARAIFDGMPR--KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSA 258
           +A  +F+GM    +  VSW ++I  YG H  G  A+ L+ +M+  G   D     SVL+ 
Sbjct: 191 EAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTT 250

Query: 259 CSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ-LNEALELIESMLVEPDG 317
            S       GL+ F+    K G        + ++D+  + G  ++E+ ++ E  +   D 
Sbjct: 251 FSCVEDLSGGLQ-FHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEE-ICGSDL 308

Query: 318 AVWGALLGACKIHKNVELAEL 338
            VW  ++     +K + +  L
Sbjct: 309 VVWNTMISGYSQNKELSVEAL 329



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 6/152 (3%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           N F  NALI  YA+   +  A  +FD +P+  +VS+  +I  Y   G    A+ LF EM 
Sbjct: 73  NVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMR 132

Query: 242 KSGIRPDGTAFVSVLSA-CSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           + G+  DG  F  V++A C+H GL    +   + +    G          ++    + G 
Sbjct: 133 EMGLVMDGFTFSGVITACCNHVGL----IRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGI 188

Query: 301 LNEALELIESMLVE-PDGAVWGALLGACKIHK 331
           L EA  +   M  E  D   W +++ A   HK
Sbjct: 189 LEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHK 220



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 65/142 (45%), Gaps = 5/142 (3%)

Query: 10  HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCC 69
           H TV  N++I+GY  + + +E+++LF +M    +   S+T++ +L  C   G +  G   
Sbjct: 409 HNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKY 468

Query: 70  HCICVK-FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP-EKGLITWNAMISG---YA 124
             +    FG++ +    +C++ +  + G +    +L D +P   G   W A++     Y 
Sbjct: 469 FNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYG 528

Query: 125 QNGLATHVLELYREMKSLGVCP 146
              LA      + +++     P
Sbjct: 529 NMELAEKAANQFLQLEPTNAVP 550


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/514 (40%), Positives = 311/514 (60%), Gaps = 15/514 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V +N++I+ Y+ N    EA+ LF KM +  V+ +SVT + LL +    G L LG   HC
Sbjct: 382 SVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHC 440

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              K G + +  V N L+ MY KCG +    K+F+ +  + +ITWN +I+    +     
Sbjct: 441 DLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNL 500

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L +   M++ GV PD  T + +L  C+ L A   G E+   I   G  S+  + N LI 
Sbjct: 501 GLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIE 560

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY++CG+L+ +  +F  M  K VV+WTA+I   G++G G+ AV+ F EM  +GI PD  A
Sbjct: 561 MYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVA 620

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           FV+++ ACSH+GL ++GL YF+ MK  Y ++P  EHY C+VDLL R+  L++A + I SM
Sbjct: 621 FVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSM 680

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            ++PD ++WGALL AC++  + E+AE    ++I+L P +TGYYVL+SNIY+     D + 
Sbjct: 681 PLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVR 740

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
            +R  ++ R LKKDPG S++E++ +V++F  G +   Q  E+ ++L  L  L+      K
Sbjct: 741 SIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLM-----AK 795

Query: 432 RSDQKNSEEHLNDTEV---------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLF 482
                N +  L+D +          HSE+LAIAFG++NT PGT + VMKNLR+C DCH  
Sbjct: 796 EGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTV 855

Query: 483 IKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            K +SKIV R+ +VRDA RFH FK G CSC DYW
Sbjct: 856 TKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 889



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 102/315 (32%), Positives = 169/315 (53%), Gaps = 4/315 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N+LISGY  N   +EA+ ++ + R  GV  +S TM  +L  C   G +  G   H +
Sbjct: 182 VSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGL 241

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K G+  D  V N L++MY K   +  GR++FD++  +  ++WN MI GY+Q GL    
Sbjct: 242 IEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEES 301

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           ++L+ EM +    PD +T   +L +C HLG    G  V   +  +G+  +   +N LINM
Sbjct: 302 IKLFMEMVN-QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINM 360

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CGNL  ++ +F GM  K  VSW ++I  Y  +G  + A++LF +M+K+ ++PD   +
Sbjct: 361 YAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTY 419

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           V +LS  +  G    G E    +  K G          +VD+  + G++ ++L++ E+M 
Sbjct: 420 VMLLSMSTQLGDLHLGKELHCDLA-KMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMK 478

Query: 313 VEPDGAVWGALLGAC 327
              D   W  ++ +C
Sbjct: 479 AR-DIITWNTIIASC 492



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 171/352 (48%), Gaps = 18/352 (5%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N++I     N L SEA+SL+ + +   ++ ++ T   ++  C       +    H   +
Sbjct: 83  WNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVL 142

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             G   D  +GN L+ MY +   +D  RK+F+++P + +++WN++ISGY  NG     LE
Sbjct: 143 DMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALE 202

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           +Y   ++LGV PD+ T   VL +C  LG+   G  +   I+  G   +  +NN L++MY 
Sbjct: 203 IYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYC 262

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +   L   R IFD M  +  VSW  +I GY   G  E +++LF EM+    +PD     S
Sbjct: 263 KFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITS 321

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           +L AC H G  + G +Y +      G +        ++++  + G L  + E+   M  +
Sbjct: 322 ILQACGHLGDLEFG-KYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCK 380

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKL--------EPMNTGYYVLLS 358
            D   W +++       NV +   +F + +KL        +P +  Y +LLS
Sbjct: 381 -DSVSWNSMI-------NVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLS 424



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 137/298 (45%), Gaps = 45/298 (15%)

Query: 109 PEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGL 168
           P   +  WN++I     NGL +  L LY E + + + PD  TF  V+++CA L    +  
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
            +  ++   GFGS+ ++ NALI+MY R  +L KAR +F+ MP + VVSW ++I GY  +G
Sbjct: 136 SIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 195

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP----- 283
           +   A++++      G+ PD     SVL AC   G  ++G +  +G+  K G++      
Sbjct: 196 YWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEG-DIIHGLIEKIGIKKDVIVN 254

Query: 284 --------------------------GPEHYTCMVDLLGRAGQLNEALELIESML--VEP 315
                                         +  M+    + G   E+++L   M+   +P
Sbjct: 255 NGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKP 314

Query: 316 DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV------LLSNIYSEARNL 367
           D     ++L AC       L +L FGK +    + +GY        +L N+Y++  NL
Sbjct: 315 DLLTITSILQACG-----HLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNL 367


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/543 (37%), Positives = 304/543 (55%), Gaps = 39/543 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+ISGYV + + +EA  LF +M  + +  +  T   LL  C + G+   G   H  
Sbjct: 262 VVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQ 321

Query: 73  CVKFGLDL----DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA---------- 118
            ++   D        V N L+T+Y K G +    K+FD +  K +++WN           
Sbjct: 322 FIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGC 381

Query: 119 ---------------------MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
                                M+SGY   GLA   L+L+ +M+S  V P   T+ G +++
Sbjct: 382 LDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAA 441

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
           C  LGA   G ++   +   GF ++    NAL+ MYARCG +K AR +F  MP    VSW
Sbjct: 442 CGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSW 501

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
            A+I   G HGHG  A++LFD+M+  GI PD  +F+++L+AC+HAGL D G +YF  M+ 
Sbjct: 502 NAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMER 561

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
            +G+ PG +HY  ++DLLGRAG++ EA +LI++M  EP  A+W A+L  C+I+ ++EL  
Sbjct: 562 DFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGA 621

Query: 338 LAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRV 397
            A  ++ K+ P + G Y+LLSN YS A       RVR +MR+R +KK+PG S++E+  +V
Sbjct: 622 YAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGNKV 681

Query: 398 HLFMVGDRNHHQTVEIYRMLD----KLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLA 453
           H+F+VGD  H    E+YR L+    K+  L    D           E       HSE+LA
Sbjct: 682 HVFLVGDTKHPDAHEVYRFLEMVGAKMRKLGYVPDTKFALQDMAPHEKEYVLFAHSERLA 741

Query: 454 IAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCK 513
           ++FG++    G  + V+KNL+ICGDCH  +  +S+ V R+ +VRD  RFHHFK G CSC 
Sbjct: 742 VSFGLLKLPAGATVTVLKNLKICGDCHTAMMFMSRAVGREIVVRDVRRFHHFKDGECSCG 801

Query: 514 DYW 516
           +YW
Sbjct: 802 NYW 804



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/349 (30%), Positives = 157/349 (44%), Gaps = 49/349 (14%)

Query: 2   FDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM--REQGVEINSVTMLCLLPICVD 59
           FD    +   TV +NA+IS +   SL + AVS+F  +   +  +  +  +   LL     
Sbjct: 112 FDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQ 171

Query: 60  PGYLWLGMCC--HCICVKFGLDLDFSVGNCLMTMYVKC---GSVDYGRKLFDQVPEKGLI 114
              L +  C   HC   K G     SV N L+ +Y+KC   G     RK+ D++PEK  +
Sbjct: 172 MHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDEL 231

Query: 115 TW-------------------------------NAMISGYAQNGLATHVLELYREMKSLG 143
           TW                               NAMISGY Q+G+     EL+R M S  
Sbjct: 232 TWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKR 291

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQ---IQANGFGSNPF-LNNALINMYARCGNL 199
           + PD  TF  +LS+CA+ G    G  V  Q   +Q +        +NNAL+ +Y++ G +
Sbjct: 292 IPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKI 351

Query: 200 KKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM-LKSGIRPDGTAFVSVLSA 258
             A  IFD M  K VVSW  I+ GY   G  + A ++F EM  KS +     +++ ++S 
Sbjct: 352 AVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSEL-----SWMVMVSG 406

Query: 259 CSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
             H GL +  L+ F  M+++  ++P    Y   V   G  G L    +L
Sbjct: 407 YVHGGLAEDALKLFNQMRSE-DVKPCDYTYAGAVAACGELGALKHGKQL 454



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 129/302 (42%), Gaps = 58/302 (19%)

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP--EKGLITWNAMISGYAQNGLAT 130
            V F  D        L++ Y   G +      FD VP   +  +  NAMIS +A+  LA 
Sbjct: 80  AVLFRADPGPVAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAA 139

Query: 131 HVLELYREMKSL--GVCPDAVTFVGVLSSCAHLGAHSVG--LEVEQQIQANGFGSNPFLN 186
             + ++R + +    + PD  +F  +LS+   +   +V    ++   +   G G+   ++
Sbjct: 140 PAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVS 199

Query: 187 NALINMYARC---GNLKKARAIFDGMPRKTVVSWT------------------------- 218
           NALI +Y +C   G  + AR + D MP K  ++WT                         
Sbjct: 200 NALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGE 259

Query: 219 ------AIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF 272
                 A+I GY   G    A +LF  M+   I PD   F S+LSAC++AG       +F
Sbjct: 260 FDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAG-------FF 312

Query: 273 YGMKNKYG----LQPG--PEHY----TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGA 322
              K+ +G    LQP   PE        +V L  ++G++  A ++ +SM ++ D   W  
Sbjct: 313 LHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLK-DVVSWNT 371

Query: 323 LL 324
           +L
Sbjct: 372 IL 373


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/507 (38%), Positives = 306/507 (60%), Gaps = 5/507 (0%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
            V + A+I+ Y+   L  +   L  +M   G+  +   +   L        L  G   H  
Sbjct: 585  VSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGY 644

Query: 73   CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             ++ G++    V N LM MYVKC +V+  R +FD+V  K +I+WN +I GY++N      
Sbjct: 645  TIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNES 704

Query: 133  LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
              L+ +M  L   P+AVT   +L + A + +   G E+       GF  + + +NAL++M
Sbjct: 705  FSLFSDML-LQFRPNAVTMTCILPAAASISSLERGREIHAYALRRGFLEDSYASNALVDM 763

Query: 193  YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
            Y +CG L  AR +FD + +K ++SWT +I GYG+HG G+ A+ LF++M  SGI PD  +F
Sbjct: 764  YVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASF 823

Query: 253  VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
             ++L AC H+GL  +G  +F  M+ +Y ++P  +HYTC+VDLL R G L EALE IESM 
Sbjct: 824  SAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMP 883

Query: 313  VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            +EPD ++W +LL  C+IHKNV+LAE    KV KLEP NTGYYVLL+NIY+EA   + + +
Sbjct: 884  IEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLLANIYAEAERWEAVKK 943

Query: 373  VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE--HDGT 430
            ++  +  R L+++ GYS++E++ +VH+F+  +RNH     I   LD +   +++  HD  
Sbjct: 944  LKNKIGGRGLRENTGYSWIEVRSKVHVFIADNRNHPDWNRIAEFLDDVARRMRQEGHDPK 1003

Query: 431  KRSDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
            K+     +++ ++D  +  HS KLA+AFG++N   G  I V KN ++C  CH   K +SK
Sbjct: 1004 KKYALMGADDAVHDEALCGHSSKLAVAFGVLNLPEGRPIRVTKNSKVCSHCHEAAKFISK 1063

Query: 489  IVDRQFIVRDATRFHHFKSGFCSCKDY 515
            + +R+ I+RD++RFH F+ G CSC+ Y
Sbjct: 1064 MCNREIILRDSSRFHRFEGGRCSCRGY 1090



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 178/393 (45%), Gaps = 40/393 (10%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T+ +N++ISG   N L SEA+ LF +M  QG E++SVT+L +LP C    Y + G   H 
Sbjct: 483 TISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHG 542

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             VK GL  + S+ N L+ MY  C       ++F  + +K +++W AMI+ Y + GL   
Sbjct: 543 YSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDK 602

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
           V  L +EM   G+ PD       L + A   +   G  V      NG      + NAL+ 
Sbjct: 603 VAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALME 662

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY +C N+++AR IFD +  K V+SW  +IGGY  +     +  LF +ML    RP+   
Sbjct: 663 MYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ-FRPNAVT 721

Query: 252 FVSVLSACSHAGLTDKGLE-YFYGMK-----NKYGLQPGPEHY----------------- 288
              +L A +     ++G E + Y ++     + Y      + Y                 
Sbjct: 722 MTCILPAAASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLT 781

Query: 289 -------TCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGACKIHKNVELAEL 338
                  T M+   G  G    A+ L E M    +EPD A + A+L AC  H  +     
Sbjct: 782 KKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYAC-CHSGLAAEGR 840

Query: 339 AFGKVI----KLEPMNTGYYVLLSNIYSEARNL 367
            F K +    K+EP    +Y  + ++ S   +L
Sbjct: 841 RFFKAMQKEYKIEP-KLKHYTCIVDLLSRTGDL 872



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/311 (32%), Positives = 148/311 (47%), Gaps = 12/311 (3%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            + +N++I G   N     AV LF KM  QG EI+SVT+L +LP C   GY  +G   H 
Sbjct: 270 AISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHG 329

Query: 72  ICVK----FGLDL------DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLI-TWNAMI 120
             VK    +GLD       D ++G+ L+ MYVKCG +   R++FD +  KG +  WN ++
Sbjct: 330 YSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIM 389

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GYA+ G     L L+ +M  LG+ PD      +L     L     GL     I   GFG
Sbjct: 390 GGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFG 449

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           +   + NALI+ YA+   +  A  +F+ MPR+  +SW ++I G   +G    A++LF  M
Sbjct: 450 AQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRM 509

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
              G   D    +SVL AC+ +     G    +G   K GL         ++D+      
Sbjct: 510 WTQGQELDSVTLLSVLPACAQSRYWFAG-RVVHGYSVKTGLIGETSLANALLDMYSNCSD 568

Query: 301 LNEALELIESM 311
                ++  SM
Sbjct: 569 WQSTNQIFRSM 579



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 152/328 (46%), Gaps = 9/328 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD      ++ V +N ++ GY       E++SLF +M E G+  +   + CLL      
Sbjct: 372 VFDAMSSKGNVHV-WNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCL 430

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
                G+  H   VK G     +V N L++ Y K   +     +F+++P +  I+WN++I
Sbjct: 431 SCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVI 490

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SG + NGL +  +EL+  M + G   D+VT + VL +CA       G  V       G  
Sbjct: 491 SGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLI 550

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
               L NAL++MY+ C + +    IF  M +K VVSWTA+I  Y   G  +    L  EM
Sbjct: 551 GETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEM 610

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEY---FYGMKNKYGLQPGPEHYTCMVDLLGR 297
           +  GIRPD  A  S L    HA   D+ L+     +G   + G++        ++++  +
Sbjct: 611 VLDGIRPDVFAVTSAL----HAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVK 666

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLG 325
              + EA  LI   +   D   W  L+G
Sbjct: 667 CRNVEEA-RLIFDRVTNKDVISWNTLIG 693



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 165/355 (46%), Gaps = 24/355 (6%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD           + +L+S Y       EAVSLF +M+  GV  ++  + C+L      
Sbjct: 158 VFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSL 217

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  G   H +  K GL    +V N L+ +Y +CG ++   ++FD +  +  I+WN+MI
Sbjct: 218 GSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMI 277

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG-- 178
            G   NG     ++L+ +M S G    +VT + VL +CA LG   +G  V      +G  
Sbjct: 278 GGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLL 337

Query: 179 FG--------SNPFLNNALINMYARCGNLKKARAIFDGMPRK-TVVSWTAIIGGYGIHGH 229
           +G         +  L + L+ MY +CG++  AR +FD M  K  V  W  I+GGY   G 
Sbjct: 338 WGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGE 397

Query: 230 GEVAVQLFDEMLKSGIRPDGTAFVSVLS-----ACSHAGLTDKGLEYFYGMKNKYGLQPG 284
            E ++ LF +M + GI PD  A   +L      +C+  GL   G    Y +K  +G Q  
Sbjct: 398 FEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHG----YIVKLGFGAQCA 453

Query: 285 PEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHK-NVELAEL 338
                 ++    ++  + +A+ L+ + +   D   W +++  C  +  N E  EL
Sbjct: 454 V--CNALISFYAKSNMIGDAV-LVFNRMPRQDTISWNSVISGCSSNGLNSEAIEL 505



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 124/254 (48%), Gaps = 13/254 (5%)

Query: 84  VGNCLMTMYVKCGSVDYGRKLFDQVPEKG--LITWNAMISGYAQNGLATHVLELYREMKS 141
           +G  L+  Y+KCG +   R +FD +P +   +  W +++S YA+ G     + L+R+M+ 
Sbjct: 138 LGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQC 197

Query: 142 LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKK 201
            GV PDA     VL   + LG+ + G  +   ++  G G    + NALI +Y+RCG ++ 
Sbjct: 198 CGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMED 257

Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261
           A  +FD M  +  +SW ++IGG   +G    AV LF +M   G        +SVL AC+ 
Sbjct: 258 AARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAG 317

Query: 262 AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD--LLG--------RAGQLNEALELIESM 311
            G    G +  +G   K GL  G +     +D   LG        + G +  A  + ++M
Sbjct: 318 LGYGLIG-KAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAM 376

Query: 312 LVEPDGAVWGALLG 325
             + +  VW  ++G
Sbjct: 377 SSKGNVHVWNLIMG 390



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 6/151 (3%)

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKT--VVSWTAIIGGYGIHGHGEVAVQLF 237
           G    L   L+  Y +CG+L +AR +FDGMP +   V  WT+++  Y   G  + AV LF
Sbjct: 133 GKGSVLGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLF 192

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
            +M   G+ PD  A   VL   S  G   +G E  +G+  K GL         ++ +  R
Sbjct: 193 RQMQCCGVSPDAHAVSCVLKCVSSLGSLTEG-EVIHGLLEKLGLGQACAVANALIAVYSR 251

Query: 298 AGQLNEALELIESMLVEPDGAV-WGALLGAC 327
            G++ +A  + +SM   P  A+ W +++G C
Sbjct: 252 CGRMEDAARVFDSM--HPRDAISWNSMIGGC 280


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/509 (38%), Positives = 305/509 (59%), Gaps = 5/509 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + YN L++ Y  N  V E++ LF +++  G +  +     LL I      L +G   H  
Sbjct: 366 ISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQ 425

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +      +  VGN L+ MY KCG      ++F  +  +  + W AMIS Y Q GL    
Sbjct: 426 TIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDG 485

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+L+ EM+   +  DA T+  ++ +CA L + ++G ++   I  +G+ SN F  +AL++M
Sbjct: 486 LKLFVEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDM 545

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG++K A  +F  MP +  VSW A+I  Y  +G G+  ++LF+EM++SG++PD  + 
Sbjct: 546 YAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSL 605

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +S+L ACSH GL ++GL+YF  M   Y L P  EHY   +D+L R G+ +EA +L+  M 
Sbjct: 606 LSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMP 665

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPM-NTGYYVLLSNIYSEARNLDGIM 371
            EPD  +W ++L +C IHKN ELA+ A  ++  ++ + +   YV +SNIY+ A   D + 
Sbjct: 666 FEPDEIMWSSVLNSCGIHKNQELAKKAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVG 725

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH---- 427
           +V+  MRER +KK P YS+VE+K + H+F   D+ H Q  EI + LD+LE  + +     
Sbjct: 726 KVKKAMRERGVKKVPAYSWVEIKHKTHVFTANDKTHPQMREIMKKLDELEEKMVKKGYKP 785

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           D +      + E  +   + HSE++AIAF +I+T  G+ I+VMKNLR C DCH  IK++S
Sbjct: 786 DSSCALHNVDEEVKVESLKYHSERIAIAFALISTPEGSPILVMKNLRACTDCHAAIKVIS 845

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KIV R+  VRD++RFHHF+ GFC+C+DYW
Sbjct: 846 KIVRREITVRDSSRFHHFRDGFCTCRDYW 874



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 158/322 (49%), Gaps = 16/322 (4%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V +NAL++GY       EA++LF KM+E G      T   +L   +    +  G   H 
Sbjct: 264 SVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHG 323

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             VK     +  V N L+  Y K   V    KLF ++PE   I++N +++ YA NG    
Sbjct: 324 FVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKE 383

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP----FLNN 187
            LEL++E++  G       F  +LS    + A S+ L++ +QI +    ++      + N
Sbjct: 384 SLELFKELQFTGFDRRNFPFATLLS----IAAISLNLDIGRQIHSQTIVTDAISEILVGN 439

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           +L++MYA+CG   +A  IF  +  ++ V WTA+I  Y   G  E  ++LF EM ++ I  
Sbjct: 440 SLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGA 499

Query: 248 DGTAFVSVLSAC-SHAGLT-DKGL-EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
           D   + S++ AC S A LT  K L  +  G      +  G    + +VD+  + G + +A
Sbjct: 500 DAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSG----SALVDMYAKCGSIKDA 555

Query: 305 LELIESMLVEPDGAVWGALLGA 326
           L++ + M V  +   W AL+ A
Sbjct: 556 LQMFQEMPVR-NSVSWNALISA 576



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 177/402 (44%), Gaps = 45/402 (11%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD   + T +T  +  LI GY  N+   EA  LF +M   G++ + V++  LL    + 
Sbjct: 154 LFDSMFQRTAVT--WTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEF 211

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             +      H   +K G D    V N L+  Y K  S+    +LF+ +PE+  +T+NA++
Sbjct: 212 DSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALL 271

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GY++ G     + L+ +M+ +G  P   TF  +L++   L     G +V   +    F 
Sbjct: 272 TGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFV 331

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            N F+ NAL++ Y++   + +A  +F  MP    +S+  ++  Y  +G  + +++LF E+
Sbjct: 332 WNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKEL 391

Query: 241 LKSGIRPDGTAFVSVLSAC-------------SHAGLTDKGLEYF--------------Y 273
             +G       F ++LS               S   +TD   E                +
Sbjct: 392 QFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEF 451

Query: 274 GMKNK----YGLQPGPEHYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGA 326
           G  N+      +Q     +T M+    + G   + L+L   M    +  D A + +++ A
Sbjct: 452 GEANRIFSDLAIQSSVP-WTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRA 510

Query: 327 CKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
           C       LA L  GK +    + +GY   +SN++S +  +D
Sbjct: 511 C-----ASLASLTLGKQLHSHIIGSGY---ISNVFSGSALVD 544



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 131/266 (49%), Gaps = 5/266 (1%)

Query: 3   DESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGY 62
           D +I+S+   V + A+IS YV   L  + + LF +M+   +  ++ T   ++  C     
Sbjct: 460 DLAIQSS---VPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLAS 516

Query: 63  LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISG 122
           L LG   H   +  G   +   G+ L+ MY KCGS+    ++F ++P +  ++WNA+IS 
Sbjct: 517 LTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISA 576

Query: 123 YAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLE-VEQQIQANGFGS 181
           YAQNG     L L+ EM   G+ PD+V+ + +L +C+H G    GL+  +   +      
Sbjct: 577 YAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVP 636

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
                 + I+M  R G   +A  +   MP     + W++++   GIH + E+A +  +++
Sbjct: 637 KKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAANQL 696

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTD 266
               +  D   +V++ +  + AG  D
Sbjct: 697 FNMKVLRDAAPYVTMSNIYAAAGEWD 722



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 90/173 (52%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N ++  Y+K G++   R LFD + ++  +TW  +I GYAQN        L+ EM   G+ 
Sbjct: 136 NTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGID 195

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           PD V+   +LS      + +   +V   +   G+ S   ++N+L++ Y +  +L  A  +
Sbjct: 196 PDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQL 255

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSA 258
           F+ +P +  V++ A++ GY   G    A+ LF +M + G RP    F ++L+A
Sbjct: 256 FNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTA 308



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 45/76 (59%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           N F  N +I  Y + GNL +AR +FD M ++T V+WT +IGGY  +     A  LF EM 
Sbjct: 131 NIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMG 190

Query: 242 KSGIRPDGTAFVSVLS 257
           + GI PD  +  ++LS
Sbjct: 191 RHGIDPDHVSLATLLS 206


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/525 (39%), Positives = 305/525 (58%), Gaps = 16/525 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE ++     V +N LI G   +    EA+S+  +M   G   ++ T+  +LPI  + 
Sbjct: 126 VFDEMLERD--AVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAEC 183

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             +  GM  H   +K G D D  VG+ L+ MY  C  +DY  K+FD   +   + WN+M+
Sbjct: 184 ADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSML 243

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GYAQNG     L ++R M   GV P  VTF  ++ +  +L    +G ++   +    F 
Sbjct: 244 AGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFN 303

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            N F++++LI+MY +CGN+  AR +F+G+    +VSWTA+I GY +HG    A  LF+ M
Sbjct: 304 DNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERM 363

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
               ++P+   F++VL+ACSHAGL D G +YF  M N+YG  P  EH   + D LGRAG 
Sbjct: 364 ELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGD 423

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L+EA   I  M ++P  +VW  LL AC++HKN  LAE    K+ +LEP + G +V+LSN+
Sbjct: 424 LDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNM 483

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           YS +   +   ++R  MR + +KK+P  S++E+K ++H+F+  D++H       R++D L
Sbjct: 484 YSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPW---YDRIIDAL 540

Query: 421 ENLVQEHDGTKRSDQKNSEEHLNDTEV---------HSEKLAIAFGIINTSPGTEIVVMK 471
              V      ++    N E+ L D E          HSEKLAI FGII+T PGT I VMK
Sbjct: 541 N--VYSEQMIRQGYVPNMEDVLQDIEEEQKREVLCGHSEKLAIVFGIISTPPGTTIRVMK 598

Query: 472 NLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           NLR+C DCH+  K +SKIV R+ +VRD  RFH FK G CSC D+W
Sbjct: 599 NLRVCVDCHIATKFISKIVAREIVVRDVNRFHRFKDGNCSCGDFW 643



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 154/362 (42%), Gaps = 26/362 (7%)

Query: 5   SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSV--TMLCLLPICVDPGY 62
           ++ S H    +   I           A+SLF +MR      +SV  ++   L  C   G 
Sbjct: 5   AVASPHFPPSWAYQIRMAASQGQFLHAISLFLQMRASVAPRSSVPASLPAALKSCAGLGL 64

Query: 63  LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVK--------------------CGSVDYGR 102
             L    H + ++ G   D    N L+ + +K                      + +  R
Sbjct: 65  CTLAASLHALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMR 124

Query: 103 KLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162
           K+FD++ E+  ++WN +I G A++      L + REM   G  PD  T   VL   A   
Sbjct: 125 KVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECA 184

Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIG 222
               G+ V      NGF ++ F+ ++LI+MYA C  +  +  +FD       V W +++ 
Sbjct: 185 DIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLA 244

Query: 223 GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGL 281
           GY  +G  E A+ +F  ML++G+RP    F S++ A  +  L   G + + Y ++ ++  
Sbjct: 245 GYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFND 304

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG 341
                  + ++D+  + G ++ A  +    +  PD   W A++    +H     A + F 
Sbjct: 305 NIFIS--SSLIDMYCKCGNVDIARRVFNG-IQSPDIVSWTAMIMGYALHGPTTEAFVLFE 361

Query: 342 KV 343
           ++
Sbjct: 362 RM 363


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/506 (40%), Positives = 306/506 (60%), Gaps = 12/506 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N LISG+  N  + +A  LF  M E+    N V+   ++   V+ G L        +  
Sbjct: 170 WNTLISGFAQNGQMQKAFDLFSVMPEK----NGVSWSAMISGYVEHGDL---EAAEELYK 222

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             G+     V   ++T Y+K G V+   ++F ++  K L+TWN+MI+GY +N  A   L+
Sbjct: 223 NVGMK-SVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLK 281

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           +++ M    V P+ ++   VL  C++L A  +G ++ Q +  +    +     +LI+MY 
Sbjct: 282 VFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYC 341

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG+L  A  +F  MPRK V+SW A+I GY  HG G  A+ LFD+M    ++PD   FV+
Sbjct: 342 KCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVA 401

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           V+ AC+HAG  D G++YF  MK ++G++  P HYTC++DLLGRAG+L+EA+ LI+ M  +
Sbjct: 402 VILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFK 461

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
           P  A++G LLGAC+IHKN++LAE A   ++ L+P +   YV L+NIY+     D + +VR
Sbjct: 462 PHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVR 521

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLE---NLVQEHDGTK 431
            MM+E  + K PGYS++E+K   H F   DR H +   I++ L++L+    L       +
Sbjct: 522 KMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDLE 581

Query: 432 RSDQKNSEEHLNDTEV-HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIV 490
            +     EEH     + HSEKLAIAFG++ T+PGT I V KNLR+CGDCH  IK +S I 
Sbjct: 582 FALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAIE 641

Query: 491 DRQFIVRDATRFHHFKSGFCSCKDYW 516
            R+ IVRD TRFHHF++GFCSC DYW
Sbjct: 642 KREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 2/223 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++I+GYV N    + + +F  M E  V  N +++  +L  C +   L LG   H +
Sbjct: 261 VTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQL 320

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K  L  D +    L++MY KCG +D   KLF ++P K +I+WNAMISGYAQ+G     
Sbjct: 321 VSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKA 380

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN-GFGSNPFLNNALIN 191
           L L+ +M++  + PD +TFV V+ +C H G   +G++  + ++   G  + P     +I+
Sbjct: 381 LHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVID 440

Query: 192 MYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVA 233
           +  R G L +A ++   MP K   + +  ++G   IH + ++A
Sbjct: 441 LLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDLA 483



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 139/325 (42%), Gaps = 52/325 (16%)

Query: 8   STHLTVCYNALISGYV-LNSLVSEAVSLFGKMREQGVEINSVTMLCLL-PICVDPGYLWL 65
           S   TV +N ++SGY  +   V EA  LF K+ E      ++ ++C L    V+    + 
Sbjct: 100 SVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVEAALAFF 159

Query: 66  GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
                 + VK     D +  N L++ + + G +     LF  +PEK  ++W+AMISGY +
Sbjct: 160 NK----MPVK-----DIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVE 210

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
           +G      ELY+                      ++G  SV +E                
Sbjct: 211 HGDLEAAEELYK----------------------NVGMKSVVVET--------------- 233

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
             A++  Y + G ++ A  IF  M  K +V+W ++I GY  +   E  +++F  M++S +
Sbjct: 234 --AMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRV 291

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
           RP+  +  SVL  CS+      G +  + + +K  L       T ++ +  + G L+ A 
Sbjct: 292 RPNPLSLSSVLLGCSNLSALPLGRQ-MHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAW 350

Query: 306 ELIESMLVEPDGAVWGALLGACKIH 330
           +L   M    D   W A++     H
Sbjct: 351 KLFLEM-PRKDVISWNAMISGYAQH 374



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 79/157 (50%), Gaps = 17/157 (10%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ-NGLATHVLELYREMKSLGV 144
           N  +  +V+   ++  R +F+++  +  +TWN M+SGY +  G      EL+ ++     
Sbjct: 77  NKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPE--- 133

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN----NALINMYARCGNLK 200
            PD+V++  ++  C      S G+E         F   P  +    N LI+ +A+ G ++
Sbjct: 134 -PDSVSY-NIMLVCY---LRSYGVEAALAF----FNKMPVKDIASWNTLISGFAQNGQMQ 184

Query: 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
           KA  +F  MP K  VSW+A+I GY  HG  E A +L+
Sbjct: 185 KAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELY 221



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 16/173 (9%)

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGY-GIHGHGEVAVQLFDEMLKSGI 245
           N  I  + R  +L+ AR +F+ M  +T V+W  ++ GY  + G  + A +LFD++ +   
Sbjct: 77  NKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPE--- 133

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
            PD  ++ +++  C    L   G+E      NK  ++     +  ++    + GQ+ +A 
Sbjct: 134 -PDSVSY-NIMLVCY---LRSYGVEAALAFFNKMPVK-DIASWNTLISGFAQNGQMQKAF 187

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAE-----LAFGKVIKLEPMNTGY 353
           +L  S++ E +G  W A++     H ++E AE     +    V+    M TGY
Sbjct: 188 DLF-SVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGY 239


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/510 (39%), Positives = 306/510 (60%), Gaps = 5/510 (0%)

Query: 11  LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
           L +C NALISG        EA+SLF ++R++G+ +N  T+  +L               H
Sbjct: 369 LILC-NALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVH 427

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
            + VK G   D  V N L+  Y KC  +    ++F++     +I   +MI+  +Q     
Sbjct: 428 ALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGE 487

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             ++L+ EM   G+ PD      +L++CA L A+  G +V   +    F S+ F  NAL+
Sbjct: 488 GAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALV 547

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
             YA+CG+++ A   F  +P + VVSW+A+IGG   HGHG+ A++LF  M+  GI P+  
Sbjct: 548 YTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHI 607

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
              SVL AC+HAGL D+   YF  MK  +G+    EHY+CM+DLLGRAG+L++A+EL+ S
Sbjct: 608 TMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNS 667

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M  + + ++WGALLGA ++HK+ EL +LA  K+  LEP  +G +VLL+N Y+ A   + +
Sbjct: 668 MPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEV 727

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
            +VR +M++  +KK+P  S++E+K +VH F+VGD++H  T EIY  L +L +L+ +    
Sbjct: 728 AKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFV 787

Query: 431 KRSDQKNSEEHLNDTEV----HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
              D    +   ++ E+    HSE+LA+AF +++T PG  I V KNLRIC DCH+  K +
Sbjct: 788 PNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFI 847

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SKIV R+ I+RD  RFHHF+ G CSC DYW
Sbjct: 848 SKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 177/387 (45%), Gaps = 36/387 (9%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF+E+  S    V +N L+S YV N    +A+ +FG+M   G++       C++  C   
Sbjct: 157 VFNEA-DSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGS 215

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             +  G   H + V+ G D D    N L+ MY+K G VD    +F+++P+  +++WNA+I
Sbjct: 216 RNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALI 275

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ-QIQANGF 179
           SG   NG     +EL  +MK  G+ P+  T   +L +C+  GA  +G ++    I+AN  
Sbjct: 276 SGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANA- 334

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            S+ ++   L++MYA+   L  AR +FD M  + ++   A+I G    G  + A+ LF E
Sbjct: 335 DSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYE 394

Query: 240 MLKSGIRPDGTAFVSVLSACS-----------HAGLTDKGLEY----FYGMKNKYG---- 280
           + K G+  + T   +VL + +           HA     G  +      G+ + Y     
Sbjct: 395 LRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSC 454

Query: 281 LQPGPEHY-----------TCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGA 326
           L      +           T M+  L +      A++L   ML   +EPD  V  +LL A
Sbjct: 455 LSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNA 514

Query: 327 CKIHKNVELAELAFGKVIKLEPMNTGY 353
           C      E  +     +IK + M+  +
Sbjct: 515 CASLSAYEQGKQVHAHLIKRQFMSDAF 541



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 156/327 (47%), Gaps = 8/327 (2%)

Query: 2   FDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPG 61
           FDE     H  V +++L++ Y  N L   A+  F  MR +GV  N   +  +L    D  
Sbjct: 60  FDEIPDPCH--VSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAR 117

Query: 62  YLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV-PEKGLITWNAMI 120
              LG   H + +  G   D  V N L+ MY   G +D  R++F++   E+  ++WN ++
Sbjct: 118 ---LGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLM 174

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           S Y +N      ++++ EM   G+ P    F  V+++C        G +V   +   G+ 
Sbjct: 175 SAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYD 234

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            + F  NAL++MY + G +  A  IF+ MP   VVSW A+I G  ++GH   A++L  +M
Sbjct: 235 KDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM 294

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
             SG+ P+     S+L ACS AG  D G +  +G   K            +VD+  +   
Sbjct: 295 KYSGLVPNVFTLSSILKACSGAGAFDLGRQ-IHGFMIKANADSDDYIGVGLVDMYAKNHF 353

Query: 301 LNEALELIESMLVEPDGAVWGALLGAC 327
           L++A ++ + M    D  +  AL+  C
Sbjct: 354 LDDARKVFDWMF-HRDLILCNALISGC 379



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 103/346 (29%), Positives = 163/346 (47%), Gaps = 3/346 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NALISG VLN     A+ L  +M+  G+  N  T+  +L  C   G   LG   H  
Sbjct: 269 VSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGF 328

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K   D D  +G  L+ MY K   +D  RK+FD +  + LI  NA+ISG +  G     
Sbjct: 329 MIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEA 388

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+ E++  G+  +  T   VL S A L A S   +V       GF  +  + N LI+ 
Sbjct: 389 LSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDS 448

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +C  L  A  +F+      +++ T++I       HGE A++LF EML+ G+ PD    
Sbjct: 449 YWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVL 508

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S+L+AC+     ++G +    +  +  +         +V    + G + +A EL  S L
Sbjct: 509 SSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAG-NALVYTYAKCGSIEDA-ELAFSSL 566

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
            E     W A++G    H + + A   FG+++  E +N  +  + S
Sbjct: 567 PERGVVSWSAMIGGLAQHGHGKRALELFGRMVD-EGINPNHITMTS 611



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 131/262 (50%), Gaps = 18/262 (6%)

Query: 83  SVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL 142
           S  N L++ Y KC      R+ FD++P+   ++W+++++ Y+ NGL    ++ +  M++ 
Sbjct: 38  SFRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAE 97

Query: 143 GVCPDAVTFVGVLSSC--AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
           GVC +      VL     A LGA     +V     A GFGS+ F+ NAL+ MY   G + 
Sbjct: 98  GVCCNEFALPVVLKCVPDARLGA-----QVHAMAMATGFGSDVFVANALVAMYGGFGFMD 152

Query: 201 KARAIF-DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC 259
            AR +F +    +  VSW  ++  Y  +     A+Q+F EM+ SGI+P    F  V++AC
Sbjct: 153 DARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNAC 212

Query: 260 SHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAV 319
           + +   + G +  + M  + G          +VD+  + G+++ A  + E M   PD  V
Sbjct: 213 TGSRNIEAGRQ-VHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKM---PDSDV 268

Query: 320 --WGALLGACKI----HKNVEL 335
             W AL+  C +    H+ +EL
Sbjct: 269 VSWNALISGCVLNGHDHRAIEL 290



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 86/208 (41%), Gaps = 7/208 (3%)

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
           GS     N LI+ Y++C     AR  FD +P    VSW++++  Y  +G    A+Q F  
Sbjct: 34  GSLASFRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHG 93

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M   G+  +  A   VL     A L  +     + M    G          +V + G  G
Sbjct: 94  MRAEGVCCNEFALPVVLKCVPDARLGAQ----VHAMAMATGFGSDVFVANALVAMYGGFG 149

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI--KLEPMNTGYYVLL 357
            +++A  +      E +   W  L+ A   +     A   FG+++   ++P   G+  ++
Sbjct: 150 FMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVV 209

Query: 358 SNIYSEARNLDGIMRVRMMMRERRLKKD 385
            N  + +RN++   +V  M+      KD
Sbjct: 210 -NACTGSRNIEAGRQVHAMVVRMGYDKD 236


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/515 (39%), Positives = 306/515 (59%), Gaps = 16/515 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVE--INSVTMLCLLPICVDPGYLWLGMCCH 70
           + +NALISG   +    E +SLF +MR++G++  +N  T+  +L        +      H
Sbjct: 373 ILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVH 432

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
            +  K GL  D  V N L+  Y KCG +DY  K+F +     +I+   M++  +Q     
Sbjct: 433 ALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGE 492

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             ++L+ +M   G+ PD+     +L++C  L A+  G +V   +    F S+ F  NAL+
Sbjct: 493 DAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALV 552

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
             YA+CG+++ A   F G+P + +VSW+A+IGG   HGHG+ A+ LF  ML  G+ P+  
Sbjct: 553 YAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHI 612

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
              SVLSAC+HAGL D   +YF  MK  +G+    EHY CM+D+LGRAG+L +A+EL+ +
Sbjct: 613 TLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNN 672

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M  + + AVWGALLGA ++H++ EL  +A  K+  LEP  +G +VLL+N Y+ A   D +
Sbjct: 673 MPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEM 732

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
            +VR +M++  +KK+P  S+VE+K +VH F+VGD++H  T +IY  L +L +L+      
Sbjct: 733 AKVRKLMKDSNVKKEPAMSWVEIKDKVHTFIVGDKSHPMTRDIYGKLAELGDLMN----- 787

Query: 431 KRSDQKNSEEHLNDTEV---------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHL 481
           K     N E  L+D +          HSE+LA+AF +I+T  G  I V KNLRIC DCH+
Sbjct: 788 KAGYVPNVEVDLHDVDRSEKELLLSHHSERLAVAFALISTPSGAPIRVKKNLRICRDCHV 847

Query: 482 FIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
             K +SKIV R+ I+RD  RFHHF +G CSC DYW
Sbjct: 848 AFKYISKIVSREIIIRDINRFHHFTNGTCSCGDYW 882



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 162/331 (48%), Gaps = 11/331 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE     H  V +++L++ Y  N +  +A+  F  MR +GV  N   +  +L    D 
Sbjct: 59  VFDEIPDPCH--VSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAPDV 116

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV----PEKGLITW 116
            +   G   H + V   L  D  V N L+ +Y   G VD  R++FD+      E+  ++W
Sbjct: 117 RF---GAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSW 173

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
           N MIS Y +N  +   + ++REM   G  P+   F  V+++C        G +V   +  
Sbjct: 174 NTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVR 233

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
            G+  + F  NAL++MY++ G+++ A  +F+ MP   VVSW A I G   HGH   A++L
Sbjct: 234 TGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALEL 293

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
             +M  SG+ P+     SVL AC+ AG  + G +  +G   K            +VD+  
Sbjct: 294 LLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQ-IHGFMVKAVADFDEFVAVGLVDMYA 352

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           + G L++A ++ + M    D  +W AL+  C
Sbjct: 353 KHGFLDDARKVFDFM-PRRDLILWNALISGC 382



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 154/350 (44%), Gaps = 35/350 (10%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA ISG V +     A+ L  +M+  G+  N  T+  +L  C   G   LG   H  
Sbjct: 272 VSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGF 331

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK   D D  V   L+ MY K G +D  RK+FD +P + LI WNA+ISG + +G    V
Sbjct: 332 MVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEV 391

Query: 133 LELYREMKSLGVCPDA--VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
           L L+  M+  G+  D    T   VL S A   A     +V    +  G  S+  + N LI
Sbjct: 392 LSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLI 451

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           + Y +CG L  A  +F       ++S T ++       HGE A++LF +ML+ G+ PD  
Sbjct: 452 DSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSF 511

Query: 251 AFVSVLSACS-----------HAGLTDKGL--EYFYGMKNKYGL---------------- 281
              S+L+AC+           HA L  +    + F G    Y                  
Sbjct: 512 VLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGL 571

Query: 282 -QPGPEHYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGAC 327
            + G   ++ M+  L + G    AL+L   ML   V P+     ++L AC
Sbjct: 572 PERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSAC 621



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 124/272 (45%), Gaps = 11/272 (4%)

Query: 63  LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISG 122
           L+ G   H   +K GL   FS  N L+T+Y +C      R +FD++P+   ++W+++++ 
Sbjct: 20  LFAGAHLHSHLLKSGLLAGFS--NHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTA 77

Query: 123 YAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN 182
           Y+ NG+    L  +R M+  GV  +      VL     +     G +V     A     +
Sbjct: 78  YSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAPDV---RFGAQVHALAVATRLVHD 134

Query: 183 PFLNNALINMYARCGNLKKARAIFDGM----PRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
            F+ NAL+ +Y   G + +AR +FD        +  VSW  +I  Y  +     A+ +F 
Sbjct: 135 VFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFR 194

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
           EM+ SG RP+   F  V++AC+ +   + G +  +G   + G +        +VD+  + 
Sbjct: 195 EMVWSGERPNEFGFSCVVNACTGSRDLEAGRQ-VHGAVVRTGYEKDVFTANALVDMYSKL 253

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           G +  A  + E M    D   W A +  C  H
Sbjct: 254 GDIEMAATVFEKMPA-ADVVSWNAFISGCVTH 284


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/510 (39%), Positives = 306/510 (60%), Gaps = 5/510 (0%)

Query: 11  LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
           L +C NALISG        EA+SLF ++R++G+ +N  T+  +L               H
Sbjct: 369 LILC-NALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVH 427

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
            + VK G   D  V N L+  Y KC  +    ++F++     +I   +MI+  +Q     
Sbjct: 428 ALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGE 487

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             ++L+ EM   G+ PD      +L++CA L A+  G +V   +    F S+ F  NAL+
Sbjct: 488 GAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALV 547

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
             YA+CG+++ A   F  +P + VVSW+A+IGG   HGHG+ A++LF  M+  GI P+  
Sbjct: 548 YTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHI 607

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
              SVL AC+HAGL D+   YF  MK  +G+    EHY+CM+DLLGRAG+L++A+EL+ S
Sbjct: 608 TMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNS 667

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M  + + ++WGALLGA ++HK+ EL +LA  K+  LEP  +G +VLL+N Y+ A   + +
Sbjct: 668 MPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEV 727

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
            +VR +M++  +KK+P  S++E+K +VH F+VGD++H  T EIY  L +L +L+ +    
Sbjct: 728 AKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFV 787

Query: 431 KRSDQKNSEEHLNDTEV----HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
              D    +   ++ E+    HSE+LA+AF +++T PG  I V KNLRIC DCH+  K +
Sbjct: 788 PNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFI 847

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SKIV R+ I+RD  RFHHF+ G CSC DYW
Sbjct: 848 SKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 157/328 (47%), Gaps = 8/328 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE     H  V +++L++ Y  N L   A+  F  MR +GV  N   +  +L    D 
Sbjct: 59  VFDEIPDPCH--VSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDA 116

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV-PEKGLITWNAM 119
               LG   H + +  G   D  V N L+ MY   G +D  R++F++   E+  ++WN +
Sbjct: 117 R---LGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGL 173

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           +S Y +N      ++++ EM   G+ P    F  V+++C        G +V   +   G+
Sbjct: 174 MSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGY 233

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             + F  NAL++MY + G +  A  IF+ MP   VVSW A+I G  ++GH   A++L  +
Sbjct: 234 DKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQ 293

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M  SG+ P+     S+L ACS AG  D G +  +G   K            +VD+  +  
Sbjct: 294 MKYSGLVPNVFTLSSILKACSGAGAFDLGRQ-IHGFMIKANADSDDYIGVGLVDMYAKNH 352

Query: 300 QLNEALELIESMLVEPDGAVWGALLGAC 327
            L++A ++ + M    D  +  AL+  C
Sbjct: 353 FLDDARKVFDWMF-HRDLILCNALISGC 379



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 177/387 (45%), Gaps = 36/387 (9%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF+E+  S    V +N L+S YV N    +A+ +FG+M   G++       C++  C   
Sbjct: 157 VFNEA-DSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGS 215

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             +  G   H + V+ G D D    N L+ MY+K G VD    +F+++P+  +++WNA+I
Sbjct: 216 RNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALI 275

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ-QIQANGF 179
           SG   NG     +EL  +MK  G+ P+  T   +L +C+  GA  +G ++    I+AN  
Sbjct: 276 SGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANA- 334

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            S+ ++   L++MYA+   L  AR +FD M  + ++   A+I G    G  + A+ LF E
Sbjct: 335 DSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYE 394

Query: 240 MLKSGIRPDGTAFVSVLSACS-----------HAGLTDKGLEY----FYGMKNKYG---- 280
           + K G+  + T   +VL + +           HA     G  +      G+ + Y     
Sbjct: 395 LRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSC 454

Query: 281 LQPGPEHY-----------TCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGA 326
           L      +           T M+  L +      A++L   ML   +EPD  V  +LL A
Sbjct: 455 LSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNA 514

Query: 327 CKIHKNVELAELAFGKVIKLEPMNTGY 353
           C      E  +     +IK + M+  +
Sbjct: 515 CASLSAYEQGKQVHAHLIKRQFMSDAF 541



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 103/346 (29%), Positives = 163/346 (47%), Gaps = 3/346 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NALISG VLN     A+ L  +M+  G+  N  T+  +L  C   G   LG   H  
Sbjct: 269 VSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGF 328

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K   D D  +G  L+ MY K   +D  RK+FD +  + LI  NA+ISG +  G     
Sbjct: 329 MIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEA 388

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+ E++  G+  +  T   VL S A L A S   +V       GF  +  + N LI+ 
Sbjct: 389 LSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDS 448

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +C  L  A  +F+      +++ T++I       HGE A++LF EML+ G+ PD    
Sbjct: 449 YWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVL 508

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S+L+AC+     ++G +    +  +  +         +V    + G + +A EL  S L
Sbjct: 509 SSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAG-NALVYTYAKCGSIEDA-ELAFSSL 566

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
            E     W A++G    H + + A   FG+++  E +N  +  + S
Sbjct: 567 PERGVVSWSAMIGGLAQHGHGKRALELFGRMVD-EGINPNHITMTS 611



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 132/262 (50%), Gaps = 18/262 (6%)

Query: 83  SVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL 142
           S  N L++ Y KC      R++FD++P+   ++W+++++ Y+ NGL    ++ +  M++ 
Sbjct: 38  SFRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAE 97

Query: 143 GVCPDAVTFVGVLSSC--AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
           GVC +      VL     A LGA     +V     A GFGS+ F+ NAL+ MY   G + 
Sbjct: 98  GVCCNEFALPVVLKCVPDARLGA-----QVHAMAMATGFGSDVFVANALVAMYGGFGFMD 152

Query: 201 KARAIF-DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC 259
            AR +F +    +  VSW  ++  Y  +     A+Q+F EM+ SGI+P    F  V++AC
Sbjct: 153 DARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNAC 212

Query: 260 SHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAV 319
           + +   + G +  + M  + G          +VD+  + G+++ A  + E M   PD  V
Sbjct: 213 TGSRNIEAGRQ-VHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKM---PDSDV 268

Query: 320 --WGALLGACKI----HKNVEL 335
             W AL+  C +    H+ +EL
Sbjct: 269 VSWNALISGCVLNGHDHRAIEL 290



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 87/208 (41%), Gaps = 7/208 (3%)

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
           GS     N LI+ Y++C     AR +FD +P    VSW++++  Y  +G    A+Q F  
Sbjct: 34  GSLASFRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHG 93

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M   G+  +  A   VL     A L  +     + M    G          +V + G  G
Sbjct: 94  MRAEGVCCNEFALPVVLKCVPDARLGAQ----VHAMAMATGFGSDVFVANALVAMYGGFG 149

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI--KLEPMNTGYYVLL 357
            +++A  +      E +   W  L+ A   +     A   FG+++   ++P   G+  ++
Sbjct: 150 FMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVV 209

Query: 358 SNIYSEARNLDGIMRVRMMMRERRLKKD 385
            N  + +RN++   +V  M+      KD
Sbjct: 210 -NACTGSRNIEAGRQVHAMVVRMGYDKD 236


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/523 (41%), Positives = 311/523 (59%), Gaps = 10/523 (1%)

Query: 1   VFDE-SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD 59
           +FDE S+K     V +NA+ISGYV      EA+ L+  M +  V+ +  TM+ ++  C  
Sbjct: 153 LFDEISVKDV---VSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQ 209

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
            G + LG   H      G   +  + N L+ +Y KCG V+    LF  + +K +I+WN +
Sbjct: 210 SGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTL 269

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI--QAN 177
           I G+    L    L L++EM   G  P+ VT + VL +CAHLGA  +G  +   I  +  
Sbjct: 270 IGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLK 329

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
           G  +   L  +LI+MYA+CG+++ A+ +FD M  +++ SW A+I G+ +HG    A  LF
Sbjct: 330 GVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLF 389

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
            +M K+GI PD   FV +LSACSH+G+ D G   F  M   Y + P  EHY CM+DLLG 
Sbjct: 390 SKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGH 449

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
            G   EA E+I +M +EPDG +W +LL ACK+H NVEL E     +IK+EP N G YVLL
Sbjct: 450 CGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPENPGSYVLL 509

Query: 358 SNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML 417
           SNIY+ A   D + ++R ++ ++ +KK PG S +E+   VH F++GD+ H +  EIYRML
Sbjct: 510 SNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVHEFIIGDKFHPRNREIYRML 569

Query: 418 DKLENLVQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
           +++E L++E     D ++   +   E        HSEKLAIAFG+I+T PGT++ ++KNL
Sbjct: 570 EEMEMLMEETGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNL 629

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           R+C +CH   KL+SKI  R+ I RD TR H  K G  SC DYW
Sbjct: 630 RVCRNCHEATKLISKIYKREIIARDRTRLHLLKDGVWSCHDYW 672



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/389 (31%), Positives = 192/389 (49%), Gaps = 36/389 (9%)

Query: 4   ESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL 63
           E+I+  +L + +N +  G+ LNS    A+ L+  M   G+  NS +   LL  C     L
Sbjct: 23  ETIQEPNLLI-WNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAKSKAL 81

Query: 64  WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS-------------------------- 97
             G   H   +K G DLD  V   L++MY + G                           
Sbjct: 82  IEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITGY 141

Query: 98  -----VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFV 152
                ++  RKLFD++  K +++WNAMISGY +       LELY++M    V PD  T V
Sbjct: 142 ASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMV 201

Query: 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK 212
            V+S+CA  G+  +G ++   I+ +GFGSN  + N LI++Y++CG ++ A  +F G+ +K
Sbjct: 202 TVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKK 261

Query: 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG-LEY 271
            V+SW  +IGG+      + A+ LF EML+SG  P+    +SVL AC+H G  D G   +
Sbjct: 262 DVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIH 321

Query: 272 FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHK 331
            Y  K   G+       T ++D+  + G +  A ++ +SML     + W A++    +H 
Sbjct: 322 VYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSS-WNAMIFGFAMHG 380

Query: 332 NVELAELAFGKVIK--LEPMNTGYYVLLS 358
               A   F K+ K  ++P +  +  LLS
Sbjct: 381 KANAAFDLFSKMRKNGIDPDDITFVGLLS 409



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 127/259 (49%), Gaps = 33/259 (12%)

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
           + Y   +F+ + E  L+ WN M  G+A N  +   L+LY  M SLG+ P++ +F  +L S
Sbjct: 15  LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKS 74

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
           CA   A   G ++   +   G+  + ++N +LI+MYA+ G L+ A  +FD    + VVS+
Sbjct: 75  CAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSY 134

Query: 218 TAIIGGYGIHGHGEVAVQLFDE-------------------------------MLKSGIR 246
           TA+I GY   G+   A +LFDE                               M+K+ ++
Sbjct: 135 TALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVK 194

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           PD +  V+V+SAC+ +G  + G +    +++ +G     +    ++DL  + G++  A  
Sbjct: 195 PDESTMVTVVSACAQSGSIELGRQLHSWIED-HGFGSNIKIVNVLIDLYSKCGEVETACG 253

Query: 307 LIESMLVEPDGAVWGALLG 325
           L +  L + D   W  L+G
Sbjct: 254 LFQG-LAKKDVISWNTLIG 271


>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
           [Vitis vinifera]
          Length = 643

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/508 (41%), Positives = 303/508 (59%), Gaps = 6/508 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           YN +I  Y ++    +   L+ +MR +GV  N ++   ++  C+    L  G+  H   +
Sbjct: 136 YNVMIRAYSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCIRISSLMGGLQIHARIL 195

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           + G   D  +   LM +Y  C   +   K+FD++P+   ++WN +IS    N      L 
Sbjct: 196 RDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISCCIHNRRTRDALR 255

Query: 135 LYREMKSL--GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           ++  M+S   G  PD VT + +L +CA+LGA   G  V   I+ +G+     L N+LI M
Sbjct: 256 MFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYIEEHGYDGALNLCNSLITM 315

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y+RCG L+KA +IF  M  + VVSW+A+I G+ +HG+G  A++ F++M + G+ PD    
Sbjct: 316 YSRCGRLEKAYSIFKRMDERNVVSWSAMISGFAMHGYGREAIEAFEQMQQLGVSPDDQTL 375

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
             VLSACSH GL D GL +F  M   +G++P   HY CMVDLLGRAG L++A +LI SM+
Sbjct: 376 TGVLSACSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCMVDLLGRAGLLDQAYQLIMSMV 435

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           ++PD  +W  LLGAC+IH++  L E   G +I+L+    G YVLL NIYS   N D +  
Sbjct: 436 IKPDSTLWRTLLGACRIHRHATLGERVIGHLIELKAQEAGDYVLLLNIYSSVGNWDKVTD 495

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL--ENLVQEHDGT 430
           +R  M+E+ ++  PG S +ELKG+VH F+V D  H +T EIY MLD++  +  +  +   
Sbjct: 496 LRKFMKEKGIQTSPGCSTIELKGKVHEFVVDDILHPRTDEIYEMLDEIGKQLKIAGYVAE 555

Query: 431 KRSDQKN--SEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
             S+  N  +EE  N    HSEKLAIAFG++ T PGT I V KNLRIC DCH F K++S 
Sbjct: 556 LSSELHNLGAEEKGNRLSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSG 615

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
             +R+ ++RD TRFHHF+ G CSC  YW
Sbjct: 616 AYNREVVIRDRTRFHHFREGQCSCNGYW 643



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 149/292 (51%), Gaps = 14/292 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMRE--QGVEINSVTMLCLLPICV 58
           VFDE  +    TV +N LIS  + N    +A+ +F  M+    G E + VT L LL  C 
Sbjct: 225 VFDEIPQWD--TVSWNVLISCCIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACA 282

Query: 59  DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
           + G L  G   H    + G D   ++ N L+TMY +CG ++    +F ++ E+ +++W+A
Sbjct: 283 NLGALEFGERVHNYIEEHGYDGALNLCNSLITMYSRCGRLEKAYSIFKRMDERNVVSWSA 342

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           MISG+A +G     +E + +M+ LGV PD  T  GVLS+C+H G    GL    ++ +  
Sbjct: 343 MISGFAMHGYGREAIEAFEQMQQLGVSPDDQTLTGVLSACSHCGLVDDGLMFFDRM-SKV 401

Query: 179 FGSNPFLNN--ALINMYARCGNLKKARAIFDGM---PRKTVVSWTAIIGGYGIHGHGEVA 233
           FG  P +++   ++++  R G L +A  +   M   P  T+  W  ++G   IH H  + 
Sbjct: 402 FGIEPNIHHYGCMVDLLGRAGLLDQAYQLIMSMVIKPDSTL--WRTLLGACRIHRHATLG 459

Query: 234 VQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
            ++   +++   +  G  +V +L+  S  G  DK  +    MK K G+Q  P
Sbjct: 460 ERVIGHLIELKAQEAGD-YVLLLNIYSSVGNWDKVTDLRKFMKEK-GIQTSP 509



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 118/249 (47%), Gaps = 4/249 (1%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           Y  ++F Q+ +     +N MI  Y+ +        LYREM+  GV P+ ++   V+ SC 
Sbjct: 120 YSSQVFSQIMKPSGSQYNVMIRAYSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCI 179

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
            + +   GL++  +I  +G  S+  L   L+++Y+ C   ++A  +FD +P+   VSW  
Sbjct: 180 RISSLMGGLQIHARILRDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNV 239

Query: 220 IIGGYGIHGHGEVAVQLFDEMLKS--GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
           +I     +     A+++FD M  +  G  PD    + +L AC++ G  + G E  +    
Sbjct: 240 LISCCIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFG-ERVHNYIE 298

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
           ++G          ++ +  R G+L +A  + + M  E +   W A++    +H     A 
Sbjct: 299 EHGYDGALNLCNSLITMYSRCGRLEKAYSIFKRM-DERNVVSWSAMISGFAMHGYGREAI 357

Query: 338 LAFGKVIKL 346
            AF ++ +L
Sbjct: 358 EAFEQMQQL 366


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/443 (42%), Positives = 286/443 (64%), Gaps = 10/443 (2%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140
           D    N ++  Y   G V   R++FD   ++   +W++MIS YA++  +   LEL+REM 
Sbjct: 53  DLVSWNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMH 112

Query: 141 SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
           +  + PD +T V V+S+C+ LGA +VG EV + +++N    +  L  ALI+MYA+CG+++
Sbjct: 113 AASIIPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIE 172

Query: 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
            A+ +FD MP K V +W+++I G   HG G  ++ LF +M+  G++P+G  FV VL AC+
Sbjct: 173 SAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACT 232

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320
           H GL  +G +YF  M   +G++P  EHY CMVDLLGR+G + EA +LI SM  EPD  +W
Sbjct: 233 HVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIW 292

Query: 321 GALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380
            ALLGAC+IHKNVE+AE A  K+  L+P+  G+YVLLSNIY++A + +G+  +R  +R  
Sbjct: 293 RALLGACRIHKNVEIAEEAMAKLRVLDPLGDGHYVLLSNIYAQANSWEGVAEMRKTIRRD 352

Query: 381 RLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS------- 433
            +++ PG S +E   ++H F+ GDR H ++ EIYR+L+++ + +++      +       
Sbjct: 353 NIQRIPGRSSIEWDEKIHEFVSGDRLHPRSKEIYRVLEEMMDRLKQAGYKPMTGLVLQDI 412

Query: 434 DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQ 493
           D+++ E  L +   HSEKLAIAF ++ T   + I + KNLR C DCH  +KL+S + DR+
Sbjct: 413 DEQSKERSLAE---HSEKLAIAFALLTTPARSTIRITKNLRACEDCHSAMKLISLVYDRK 469

Query: 494 FIVRDATRFHHFKSGFCSCKDYW 516
            IVRD  RFHHF  G CSCKDYW
Sbjct: 470 LIVRDRNRFHHFSEGQCSCKDYW 492



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 123/221 (55%), Gaps = 2/221 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           ++++IS Y  +    EA+ L+ +M    +  + +T++ ++  C D G L +G   H    
Sbjct: 88  WSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAEVHRFVE 147

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
              ++LD  +G  L+ MY KCG ++  +++FD++PEK + TW++MI G A +GL    L 
Sbjct: 148 SNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLS 207

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI-QANGFGSNPFLNNALINMY 193
           L+ +M S G+ P+ VTFVGVL +C H+G  S G +  + + + +G          ++++ 
Sbjct: 208 LFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLL 267

Query: 194 ARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVA 233
            R G++++AR +   M      + W A++G   IH + E+A
Sbjct: 268 GRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIA 308



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 43/186 (23%)

Query: 177 NGFGSNP----FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
           + F   P    FL N ++  Y     + +AR +FDGMP + +VSW  +I GY + G   +
Sbjct: 13  DAFDEAPLRDVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGL 72

Query: 233 AVQLFD-------------------------------EMLKSGIRPDGTAFVSVLSACSH 261
           A ++FD                               EM  + I PD    VSV+SACS 
Sbjct: 73  AREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSD 132

Query: 262 AGLTDKGLE---YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGA 318
            G    G E   +    + +  L+ G    T ++D+  + G +  A  + + M  E D  
Sbjct: 133 LGALAVGAEVHRFVESNRIELDLKLG----TALIDMYAKCGDIESAQRVFDRM-PEKDVQ 187

Query: 319 VWGALL 324
            W +++
Sbjct: 188 TWSSMI 193


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/521 (38%), Positives = 315/521 (60%), Gaps = 8/521 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD      H++  +  +I+ Y  +S   EA+ +F + +++G++++ + +  +L  C   
Sbjct: 423 VFDRMRIKDHIS--WTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGL 480

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             + L    HC  ++ GL LD  V N ++ +Y +CG V +  K+F+ V +K ++TW +MI
Sbjct: 481 ETILLAKQLHCYAIRNGL-LDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMI 539

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           + YA +GL    L L+ EM+S  V PD+V  V +L +   L + + G EV   +    F 
Sbjct: 540 NCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFH 599

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
               + ++L++MY+ CG+L  A  +F+ +  K +V WTA+I   G+HGHG+ A+ LF  M
Sbjct: 600 MEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRM 659

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           L++G+ PD  +F+++L ACSH+ L ++G  Y   M + Y L+P  EHY C+VDLLGR+GQ
Sbjct: 660 LQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQ 719

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
             EA E I+SM ++P   VW +LLGAC++HKN ELA +A  ++++LEP N G YVL+SN+
Sbjct: 720 TEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNV 779

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           ++E    +    VR  + ER L+KDP  S++E+   VH F   D +H     I   L ++
Sbjct: 780 FAEMGKWNNAKEVRARISERGLRKDPACSWIEIGNNVHTFTTRDNSHRDAERINLKLAEI 839

Query: 421 ENLVQEHDGTKRSDQK-----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRI 475
              +++  G     +      + EE ++    HSE+LAI+FG+INT PG  + + KNLR+
Sbjct: 840 TERLRKEGGYTEDTRSVLHDVSEEEKVDVLHRHSERLAISFGLINTRPGMPLRIAKNLRV 899

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           CGDCH F KLVSK+ DR  +VRDA RFHHF  G CSC D+W
Sbjct: 900 CGDCHEFTKLVSKLFDRDIVVRDANRFHHFSGGSCSCGDFW 940



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/392 (29%), Positives = 182/392 (46%), Gaps = 34/392 (8%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N++ISG + N +  +A+ LF  M+   + +NS T + +L +C +   L LG   H   +
Sbjct: 234 WNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALL 293

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K G +++    N L+ MY KCG VD   ++F ++ EK  I+WN+M+S Y QNGL    +E
Sbjct: 294 KSGSEVNIQC-NALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIE 352

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
              EM   G  PD    V + S+  HLG    G EV          S+  + N L++MY 
Sbjct: 353 FISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYM 412

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +C  ++ +  +FD M  K  +SWT II  Y        A+++F E  K GI+ D     S
Sbjct: 413 KCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGS 472

Query: 255 VLSACS-----------HAGLTDKGL-----------------EYFYGMKNKYGL-QPGP 285
           +L ACS           H      GL                 E ++ +K    + Q   
Sbjct: 473 ILEACSGLETILLAKQLHCYAIRNGLLDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDI 532

Query: 286 EHYTCMVDLLGRAGQLNEALEL---IESMLVEPDGAVWGALLGACKIHKNVELAELAFGK 342
             +T M++    +G LNEAL L   ++S  V+PD     ++LGA     ++   +   G 
Sbjct: 533 VTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGF 592

Query: 343 VIKLE-PMNTGYYVLLSNIYSEARNLDGIMRV 373
           +I+    M       L ++YS   +L G ++V
Sbjct: 593 LIRRNFHMEEAIVSSLVDMYSGCGSLSGALKV 624



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 182/373 (48%), Gaps = 5/373 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N+++S YV N L +EA+    +M   G + +   ++ L       G+L  G   H  
Sbjct: 332 ISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAY 391

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K  LD D  VGN LM MY+KC  ++Y   +FD++  K  I+W  +I+ YAQ+      
Sbjct: 392 AIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEA 451

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           LE++RE +  G+  D +    +L +C+ L    +  ++      NG   +  + N +I++
Sbjct: 452 LEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGL-LDLVVKNRIIDI 510

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y  CG +  +  +F+ + +K +V+WT++I  Y   G    A+ LF EM  + ++PD  A 
Sbjct: 511 YGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVAL 570

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           VS+L A        KG E  +G   +          + +VD+    G L+ AL++  ++ 
Sbjct: 571 VSILGAIGGLSSLAKGKE-VHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVK 629

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDGI 370
            + D  +W A++ A  +H + + A   F ++++  + P +  +  LL          +G 
Sbjct: 630 CK-DMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGK 688

Query: 371 MRVRMMMRERRLK 383
             + MMM   RL+
Sbjct: 689 CYLDMMMSTYRLE 701



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 173/354 (48%), Gaps = 13/354 (3%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKMR---EQGVEINSVTMLCLLPICVDPGYLW 64
           S+     +NALI  Y+ +    EA+ ++  MR     GV  +  T+  +L      G   
Sbjct: 122 SSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGR 181

Query: 65  LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE-KGLITWNAMISGY 123
            G   H + VK GLD    V N L+ MY KCG +D   ++F+ + + + + +WN+MISG 
Sbjct: 182 CGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGC 241

Query: 124 AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP 183
            QNG+    L+L+R M+   +  ++ T VGVL  C  L   ++G E+   +  +G   N 
Sbjct: 242 LQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVN- 300

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
              NAL+ MY +CG +  A  +F  +  K  +SW +++  Y  +G    A++   EML+ 
Sbjct: 301 IQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRG 360

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
           G +PD    VS+ SA  H G    G E + Y +K +  L    +    ++D+  +   + 
Sbjct: 361 GFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQR--LDSDTQVGNTLMDMYMKCRYIE 418

Query: 303 EALELIESMLVEPDGAVWGALLGA-CKIHKNVELAEL---AFGKVIKLEPMNTG 352
            +  + + M ++ D   W  ++    +  +++E  E+   A  + IK++PM  G
Sbjct: 419 YSAHVFDRMRIK-DHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIG 471



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 121/260 (46%), Gaps = 14/260 (5%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK---SLGV 144
           L+ MY KCG V   R LFD +  + + +WNA+I  Y  +G A   L +YR M+   + GV
Sbjct: 101 LLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGV 160

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARA 204
            PD  T   VL +    G    G EV      +G   + F+ NALI MYA+CG L  A  
Sbjct: 161 APDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMR 220

Query: 205 IFDGMPR-KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG 263
           +F+ M   + V SW ++I G   +G    A+ LF  M ++ +  +    V VL  C+   
Sbjct: 221 VFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELA 280

Query: 264 LTDKGLEYFYGMKNKYGLQPGPE---HYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320
             + G E    +     L+ G E       ++ +  + G+++ AL +    + E D   W
Sbjct: 281 QLNLGRELHAAL-----LKSGSEVNIQCNALLVMYTKCGRVDSALRVFRE-IDEKDYISW 334

Query: 321 GALLGACKIHKNVELAELAF 340
            ++L +C +   +    + F
Sbjct: 335 NSML-SCYVQNGLYAEAIEF 353



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 90/193 (46%), Gaps = 6/193 (3%)

Query: 140 KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF--GSNPFLNNALINMYARCG 197
           ++ G  P    +  VL   A   A + G++V     A G   G + FL   L+ MY +CG
Sbjct: 50  QTPGRSPPQEHYGWVLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCG 109

Query: 198 NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM---LKSGIRPDGTAFVS 254
            +  AR +FDGM  +TV SW A+IG Y   G    A+ ++  M     SG+ PDG    S
Sbjct: 110 RVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLAS 169

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VL A    G    G E  +G+  K+GL         ++ +  + G L+ A+ + E M   
Sbjct: 170 VLKASGVEGDGRCGCE-VHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDG 228

Query: 315 PDGAVWGALLGAC 327
            D A W +++  C
Sbjct: 229 RDVASWNSMISGC 241


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/540 (38%), Positives = 308/540 (57%), Gaps = 36/540 (6%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGY-LWLGMCCHC 71
           V +NALISG+       E+   F  M   G     VT + +L  C      + LGM  H 
Sbjct: 88  VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHG 147

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKC-------------------------------GSVDY 100
             V  G+  D  V N L+ MY +C                               G VD 
Sbjct: 148 RVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDE 207

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160
            R LFD++PE+  ++W AMI GY         LE++REM+   V  D  T V V+++CA 
Sbjct: 208 ARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQ 267

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           LGA  +G  V   +   G   + F+ NALI+MY++CG++++A  +F GM  +   +WTAI
Sbjct: 268 LGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAI 327

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           I G  ++G+ E A+++F  M++    PD   F+ VL+AC+HAGL DKG E+F  M   Y 
Sbjct: 328 ILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYN 387

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           + P   HY C++DLLGRAG++ EAL+ I+ M + P+  +WG LL AC++H N E+ EL  
Sbjct: 388 IAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVA 447

Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400
            ++++L+P N+  Y+LLSNIY++    + + R+R  + E+ +KK+PG S +E+ G +H F
Sbjct: 448 ERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIHEF 507

Query: 401 MVGDRNHHQTVEIYRMLDK----LENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAF 456
           + GD++H  + EIY  L+     L N+    D T+   +   +E       HSEKLAIAF
Sbjct: 508 VAGDQSHPMSKEIYSKLESIISDLNNVGYFPDVTEVFVEVAEKEKKKVLYWHSEKLAIAF 567

Query: 457 GIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            ++++ P T I ++KNLR+C DCH  IKL+S++  R+ +VRD TRFHHF+ GFCSCKDYW
Sbjct: 568 ALLSSKPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 627



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 120/248 (48%), Gaps = 4/248 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           TV + A+I GYV  +   EA+ +F +M+   V  +  TM+ ++  C   G L +G     
Sbjct: 220 TVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRV 279

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              + G+ +D  VGN L+ MY KCGS++    +F  +  +   TW A+I G A NG    
Sbjct: 280 YMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEE 339

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLE-VEQQIQANGFGSNPFLNNALI 190
            +E++  M  +   PD VTF+GVL++C H G    G E     I+A     N      +I
Sbjct: 340 AIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCII 399

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++  R G + +A    D MP       W  ++    +HG+ E+   + + +L+  + P+ 
Sbjct: 400 DLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLE--LDPEN 457

Query: 250 TAFVSVLS 257
           +    +LS
Sbjct: 458 SMVYILLS 465



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 152/354 (42%), Gaps = 42/354 (11%)

Query: 30  EAVSLFGKMREQGVEINSVTMLCLLPICVDP----GYLWLGMCCHCICVKFGLDLDFSVG 85
           +AV+ + +M  +G   ++ T   LL          G        H   V+ G+  +  V 
Sbjct: 2   DAVAGYARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHVA 61

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           + L+  Y   G     R L  +      + WNA+ISG+ + G        + +M   G  
Sbjct: 62  SSLVAAYTAGGDGAAARALVGECDTP--VAWNALISGHNRGGRFGESCGSFVDMARAGAA 119

Query: 146 PDAVTFVGVLSSCAHLGAHSV--GLEVEQQIQANGFGSNPFLNNALINMYARC------- 196
           P  VT+V VLS+C   G   V  G++V  ++  +G   +  + NAL++MYA C       
Sbjct: 120 PTPVTYVSVLSACGK-GTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAW 178

Query: 197 ------------------------GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
                                   G + +AR +FD MP +  VSWTA+I GY        
Sbjct: 179 KVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFRE 238

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
           A+++F EM  S +  D    VSV++AC+  G  + G E+     ++ G++        ++
Sbjct: 239 ALEMFREMQYSNVSADEFTMVSVITACAQLGALEMG-EWVRVYMSRQGIKMDAFVGNALI 297

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
           D+  + G +  AL++ + M    D   W A++    ++   E A   F ++I++
Sbjct: 298 DMYSKCGSIERALDVFKGMH-HRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRV 350


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/537 (40%), Positives = 300/537 (55%), Gaps = 35/537 (6%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           YN +  GY+   L    + ++ +M  + V  N  T   L+  C     +  G   H   +
Sbjct: 88  YNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVL 147

Query: 75  KFGLDLD-FSVGN------------------------------CLMTMYVKCGSVDYGRK 103
           KFG   D FS+ N                               L+T Y + G VD  R+
Sbjct: 148 KFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKARE 207

Query: 104 LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163
           +F+ +PE+  ++WNAMI+ Y Q+        L+  M+   V  D      +LS+C  LGA
Sbjct: 208 VFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGA 267

Query: 164 HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGG 223
              G  +   I+ +G   +  L   +I+MY +CG L+KA  +F+ +P+K + SW  +IGG
Sbjct: 268 LEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGG 327

Query: 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP 283
             +HG GE A++LF EM +  + PDG  FV+VLSAC+H+GL ++G  YF  M    GL+P
Sbjct: 328 LAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKP 387

Query: 284 GPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
           G EH+ CMVDLLGRAG L EA +LI  M V PD  V GAL+GAC+IH N EL E    KV
Sbjct: 388 GMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKV 447

Query: 344 IKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVG 403
           I+LEP N+G YVLL+N+Y+ A   + + +VR +M +R +KK PG+S +E +  V  F+ G
Sbjct: 448 IELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAG 507

Query: 404 DRNHHQTVEIYRMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGII 459
            R H Q  EIY  LD++   ++       +D      + EE  N    HSEKLAIAFG++
Sbjct: 508 GRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLL 567

Query: 460 NTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            T PG  + + KNLRIC DCH   KL+SK+ DR+ I+RD  RFHHF+ G CSCKDYW
Sbjct: 568 KTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 624



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 163/323 (50%), Gaps = 21/323 (6%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V +NA+I+ YV ++ + EA +LF +MR + V ++      +L  C   G L  G   H 
Sbjct: 217 SVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHG 276

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              K G++LD  +   ++ MY KCG ++   ++F+++P+KG+ +WN MI G A +G    
Sbjct: 277 YIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEA 336

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--AL 189
            +EL++EM+   V PD +TFV VLS+CAH G    G    Q +     G  P + +   +
Sbjct: 337 AIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYM-TEVLGLKPGMEHFGCM 395

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           +++  R G L++AR + + MP         A++G   IHG+ E+  Q+  ++++  + P 
Sbjct: 396 VDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIE--LEPH 453

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP-----EHYTCMVDLL--GRA--- 298
            +    +L+    +    + +     + N  G++  P     E  + + + +  GRA   
Sbjct: 454 NSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQ 513

Query: 299 -----GQLNEALELIESMLVEPD 316
                 +L+E LE I S+   PD
Sbjct: 514 AKEIYAKLDEILETIRSIGYVPD 536



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 138/300 (46%), Gaps = 35/300 (11%)

Query: 70  HCICVKFGLDLDF-SVGNCLMTMYV-KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
           H   ++ GL  D  ++G  +    + K G ++Y  ++FD++P      +N +  GY +  
Sbjct: 40  HSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQ 99

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
           LA + + +Y  M    V P+  T+  ++ +C    A   G ++   +   GFG++ F  N
Sbjct: 100 LARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLN 159

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQ------------ 235
            LI+MY    +L++AR +FD MP++ VVSWT++I GY   G  + A +            
Sbjct: 160 NLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVS 219

Query: 236 -------------------LFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
                              LFD M    +  D     S+LSAC+  G  ++G ++ +G  
Sbjct: 220 WNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQG-KWIHGYI 278

Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELA 336
            K G++   +  T ++D+  + G L +A E+    L +   + W  ++G   +H   E A
Sbjct: 279 EKSGIELDSKLATTVIDMYCKCGCLEKASEVFNE-LPQKGISSWNCMIGGLAMHGKGEAA 337


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/510 (41%), Positives = 308/510 (60%), Gaps = 10/510 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +N LI GY        AVSL+ +MR  G VE ++ T   LL        + LG   H + 
Sbjct: 88  WNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHSVV 147

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           ++ G      V N L+ +Y  CG V    K+FD++PEK L+ WN++I+G+A+NG     L
Sbjct: 148 IRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEAL 207

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
            LY EM   G+ PD  T V +LS+CA +GA ++G      +   G   N   +N L+++Y
Sbjct: 208 ALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLY 267

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM-LKSGIRPDGTAF 252
           ARCG +++A+ +FD M  K  VSWT++I G  ++G G+ A++LF  M  K G+ P    F
Sbjct: 268 ARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITF 327

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           V +L ACSH G+  +G EYF  M  +Y ++P  EH+ CMVDLL RAGQ+ +A E I  M 
Sbjct: 328 VGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMP 387

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           ++P+  +W  LLGAC +H + +LAELA  K+++LEP ++G YVLLSN+Y+  +    + +
Sbjct: 388 MQPNVVIWRTLLGACTVHGDSDLAELARMKILQLEPNHSGDYVLLSNMYASEQRWSDVQK 447

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD------KLENLVQE 426
           +R  M    ++K PG+S VE+  RVH F++GD++H Q   IY  L       +LE  V +
Sbjct: 448 IRKQMLRDGVRKVPGHSLVEVGNRVHEFLMGDKSHPQNDMIYAKLKEMTDRLRLEGYVPQ 507

Query: 427 HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
                   ++  EE  N    HSEK+AIAF +I+T     I V+KNL++C DCHL IKLV
Sbjct: 508 ISNVYVDVEE--EEKENALVYHSEKIAIAFMLISTPERWPIRVVKNLKVCADCHLAIKLV 565

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SK+ +R+ +VRD +RFHHFK+G CSC+DYW
Sbjct: 566 SKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 127/225 (56%), Gaps = 5/225 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++I+G+  N    EA++L+ +M  +G++ +  T++ LL  C   G L LG   H  
Sbjct: 188 VAWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVY 247

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K GL  +    N L+ +Y +CG V+  + LFD++ +K  ++W ++I G A NGL    
Sbjct: 248 MIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEA 307

Query: 133 LELYREMKSL-GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--AL 189
           +EL++ M+S  G+ P  +TFVG+L +C+H G    G E  +++ +  +   P + +   +
Sbjct: 308 IELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRM-SEEYKIEPRIEHFGCM 366

Query: 190 INMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVA 233
           +++ AR G +KKA      MP +  VV W  ++G   +HG  ++A
Sbjct: 367 VDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLA 411


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/523 (39%), Positives = 307/523 (58%), Gaps = 9/523 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM-REQGVE--INSVTMLCLLPIC 57
           +FD   +  H +  ++A++S +  +     A++++ +M RE G     N  T    L   
Sbjct: 115 LFDRMPRRDHFS--WSAIVSAHARHGQPRAALAIYRRMLREPGSAGVDNEFTASSALAAA 172

Query: 58  VDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWN 117
                   G   HC  V+ G+D D  V + L  MY KCG VD  R +FD++P + +++W 
Sbjct: 173 TAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSWT 232

Query: 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
           AM+  Y           L+  M   G+ P+  T+ GVL +CA   +  +G +V  ++  +
Sbjct: 233 AMVERYFDARRDGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKS 292

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
             G + F  +AL++MY++ G++  A  +F GMP+  +VSWTA+I GY  +G  + A++ F
Sbjct: 293 RAGDSCFAESALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYF 352

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
           D +L+SG RPD   FV VLSAC+HAGL DKGL  F+ +K++YG++   +HY C++DLL R
Sbjct: 353 DMLLRSGCRPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLSR 412

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
           +G    A E+I +M V+P+  +W +LLG C+IHKNV LA  A   + ++EP N   YV L
Sbjct: 413 SGLFERAEEMINTMSVKPNKFLWASLLGGCRIHKNVRLARWAAEALFEIEPENPATYVTL 472

Query: 358 SNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML 417
           +NIY+     D +   R +M  + + K P  S++E+  R+H+F+VGD+ H Q  ++Y +L
Sbjct: 473 ANIYASVGLFDEVENTRRIMELKGITKMPASSWIEVGTRMHVFLVGDKLHPQAEQVYALL 532

Query: 418 DKLENLVQEHDGTKRS----DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
            KL   ++E      +         E+   D   HSE+LA+AFGII T  G  I V KNL
Sbjct: 533 KKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGAPIKVFKNL 592

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           RICGDCH  IKL+SKIV R+ IVRD+ RFHHFK+G CSC+DYW
Sbjct: 593 RICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 120/264 (45%), Gaps = 38/264 (14%)

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM----KSLGVCPDAVTFVGVLS 156
            R LFD++P +   +W+A++S +A++G     L +YR M     S GV  +  T    L+
Sbjct: 112 ARALFDRMPRRDHFSWSAIVSAHARHGQPRAALAIYRRMLREPGSAGV-DNEFTASSALA 170

Query: 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS 216
           +         G E+   +   G  ++  + +AL +MYA+CG +  AR++FD MP + VVS
Sbjct: 171 AATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVS 230

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC----------------- 259
           WTA++  Y          +LF  ML+SGI+P+   +  VL AC                 
Sbjct: 231 WTAMVERYFDARRDGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMT 290

Query: 260 -SHAGLTDKGLEYFYGMKNKYG--------LQPGPE----HYTCMVDLLGRAGQLNEALE 306
            S AG +         M +KYG         +  P+     +T M+    + GQ +EAL 
Sbjct: 291 KSRAGDSCFAESALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALR 350

Query: 307 LIESML---VEPDGAVWGALLGAC 327
             + +L     PD   +  +L AC
Sbjct: 351 YFDMLLRSGCRPDHVTFVGVLSAC 374



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 48/230 (20%), Positives = 86/230 (37%), Gaps = 48/230 (20%)

Query: 187 NALINMYARCGN-LKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS-- 243
           N L+    R    L  ARA+FD MPR+   SW+AI+  +  HG    A+ ++  ML+   
Sbjct: 96  NTLVAALGRSPRGLASARALFDRMPRRDHFSWSAIVSAHARHGQPRAALAIYRRMLREPG 155

Query: 244 ------------------------------------GIRPDGTAFVSVLSACSHAGLTDK 267
                                               GI  D   + ++    +  G  D 
Sbjct: 156 SAGVDNEFTASSALAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKCGRVDD 215

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALL 324
               F  M  +  +      +T MV+    A +  E   L   ML   ++P+   +  +L
Sbjct: 216 ARSVFDRMPVRDVVS-----WTAMVERYFDARRDGEGFRLFVRMLRSGIQPNEFTYAGVL 270

Query: 325 GACKIHKNVELAELAFGKVIKLEPMNTGYY-VLLSNIYSEARNLDGIMRV 373
            AC    + +L +   G++ K    ++ +    L ++YS+  ++   +RV
Sbjct: 271 RACAEFTSEKLGKQVHGRMTKSRAGDSCFAESALVHMYSKYGDMGTAVRV 320


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/545 (38%), Positives = 308/545 (56%), Gaps = 43/545 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+ISGYV + +  EA  LF +M  + V ++  T   +L  C + G    G   H  
Sbjct: 260 VVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQ 319

Query: 73  CVK----FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA---------- 118
            ++    F  +    V N L+T Y KCG++   R++FD +  K +++WN           
Sbjct: 320 IIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSC 379

Query: 119 ---------------------MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
                                M+SGY   G A   L+L+ +M+S  V P   T+ G +++
Sbjct: 380 LDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAA 439

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
           C  LGA   G ++   I   GF  +    NALI MYARCG +K+A  +F  MP    VSW
Sbjct: 440 CGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSW 499

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
            A+I   G HGHG  A++LFD M+  GI PD  +F++VL+AC+H+GL D+G  YF  MK 
Sbjct: 500 NAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKR 559

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
            +G+ PG +HYT ++DLLGRAG++ EA +LI++M  EP  ++W A+L  C+   ++EL  
Sbjct: 560 DFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGA 619

Query: 338 LAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRV 397
            A  ++ K+ P + G Y+LLSN YS A       RVR +MR+R +KK+PG S++E   +V
Sbjct: 620 HAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKV 679

Query: 398 HLFMVGDRNHHQTVEIYRMLD----KLENL--VQEHDGTKRSDQKNSEEHLNDTEVHSEK 451
           H+F+VGD  H +  E+Y+ L+    K+  L  V +        + + +EH+     HSE+
Sbjct: 680 HVFLVGDTKHPEAHEVYKFLEMVGAKMRKLGYVPDTKVVLHDMEPHQKEHI--LFAHSER 737

Query: 452 LAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCS 511
           LA+ FG++N  PG  + V+KNLRIC DCH  I  +SK V R+ +VRD  RFHHFK G CS
Sbjct: 738 LAVGFGLLNLPPGATVTVLKNLRICDDCHAAIMFMSKAVGREIVVRDVRRFHHFKDGECS 797

Query: 512 CKDYW 516
           C +YW
Sbjct: 798 CGNYW 802



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 113/415 (27%), Positives = 174/415 (41%), Gaps = 74/415 (17%)

Query: 2   FDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDP 60
           FD    +   TV +NA+IS Y   S  + AV++F  +   G +  +  +   LL      
Sbjct: 111 FDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHL 170

Query: 61  GYLWLGMCC--HCICVKFGLDLDFSVGNCLMTMYVKCGSVDY---GRKLFDQVPEKGLIT 115
             + +  C   HC  +K G     SV N L+ +Y+KC S +     RK+ D++P K  +T
Sbjct: 171 PNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLT 230

Query: 116 W-------------------------------NAMISGYAQNGLATHVLELYREMKSLGV 144
           W                               NAMISGY  +G+A    EL+R M    V
Sbjct: 231 WTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERV 290

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQI---QANGFGSNPF-LNNALINMYARCGNLK 200
             D  TF  VLS+CA++G  + G  V  QI   Q N        +NNAL+  Y++CGN+ 
Sbjct: 291 PLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIA 350

Query: 201 KARAIFDGMPRKTVVSWTAIIGGY------------------------------GIH-GH 229
            AR IFD M  K VVSW  I+ GY                               +H G 
Sbjct: 351 VARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGF 410

Query: 230 GEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYT 289
            E A++LF++M    ++P    +   ++AC   G    G +  +G   + G +       
Sbjct: 411 AEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQ-LHGHIVQLGFEGSNSAGN 469

Query: 290 CMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI 344
            ++ +  R G + EA  L+  ++   D   W A++ A   H +   A   F +++
Sbjct: 470 ALITMYARCGAVKEA-HLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMV 523



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 126/253 (49%), Gaps = 6/253 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF+E      L+  +  ++SGYV      +A+ LF KMR + V+    T    +  C + 
Sbjct: 386 VFEEMPYKNELS--WMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGEL 443

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  G   H   V+ G +   S GN L+TMY +CG+V     +F  +P    ++WNAMI
Sbjct: 444 GALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMI 503

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           S   Q+G     LEL+  M + G+ PD ++F+ VL++C H G    G    + ++ + FG
Sbjct: 504 SALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRD-FG 562

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLF 237
             P  ++   LI++  R G + +AR +   MP +   S W AI+ G    G  E+     
Sbjct: 563 IIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAA 622

Query: 238 DEMLKSGIRPDGT 250
           D++ K   + DGT
Sbjct: 623 DQLFKMTPQHDGT 635



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 118/289 (40%), Gaps = 57/289 (19%)

Query: 85  GNCLMTMYVKCGSVDYGRKLFDQVP--EKGLITWNAMISGYAQNGLATHVLELYREMKSL 142
              L+  Y     +      FD VP   +  +  NA+IS YA+   A   + ++R + + 
Sbjct: 91  ATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLAS 150

Query: 143 G-VCPDAVTFVGVLSSCAHLGAHSVG--LEVEQQIQANGFGSNPFLNNALINMYARCGN- 198
           G + PD  +F  +LS+  HL   SV    ++   +  +G G    + NAL+ +Y +C + 
Sbjct: 151 GSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESP 210

Query: 199 --LKKARAIFDGMPRKTVVSWT-------------------------------AIIGGYG 225
              + AR + D MP K  ++WT                               A+I GY 
Sbjct: 211 EATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYV 270

Query: 226 IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG----L 281
             G    A +LF  M+   +  D   F SVLSAC++ GL   G       K+ +G    L
Sbjct: 271 HSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHG-------KSVHGQIIRL 323

Query: 282 QPG--PEHY----TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
           QP   PE        +V    + G +  A  + ++M ++ D   W  +L
Sbjct: 324 QPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLK-DVVSWNTIL 371


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/509 (39%), Positives = 309/509 (60%), Gaps = 26/509 (5%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + ++I+GY  +     A+ L  +M ++GV+++ V +  +L  C   G L  G   H  
Sbjct: 318 VSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDY 377

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
                +  +  V N LM MY KCGS++    +F  +  K +I+WN M+            
Sbjct: 378 IKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG----------- 426

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
                E+K     PD+ T   +L +CA L A   G E+   I  NG+ S+  + NAL+++
Sbjct: 427 -----ELK-----PDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDL 476

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CG L  AR +FD +P K +VSWT +I GYG+HG+G  A+  F+EM  +GI PD  +F
Sbjct: 477 YVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSF 536

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +S+L ACSH+GL ++G  +FY MKN + ++P  EHY CMVDLL R G L++A + IE++ 
Sbjct: 537 ISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLP 596

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           + PD  +WGALL  C+I+ ++ELAE    +V +LEP NTGYYVLL+NIY+EA   + + R
Sbjct: 597 IAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKREEVKR 656

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHH-QTVEIYRMLDKLENLVQEHDGTK 431
           +R  + ++ L+K+PG S++E+KGRV+LF+ G+ + H  + +I  +L K+   ++E     
Sbjct: 657 MREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFP 716

Query: 432 RSDQK--NSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           ++     N++E   +  +  HSEKLA+AFG++   P   I V KNLR+CGDCH   K +S
Sbjct: 717 KTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMS 776

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K   R+ ++RD+ RFHHFK G+CSC+ +W
Sbjct: 777 KETRREIVLRDSNRFHHFKDGYCSCRGFW 805



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 161/318 (50%), Gaps = 23/318 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N++ISGYV N L    + ++ +M   G++++  T++ +L  C + G L LG   H +
Sbjct: 217 ISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSL 276

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K   +   +  N L+ MY KCG +D   ++F+++ E+ +++W +MI+GY ++G +   
Sbjct: 277 AIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGA 336

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + L ++M+  GV  D V    +L +CA  G+   G +V   I+AN   SN F+ NAL++M
Sbjct: 337 IILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDM 396

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG+++ A ++F  M  K ++SW  ++G                      ++PD    
Sbjct: 397 YAKCGSMEGANSVFSTMVVKDIISWNTMVG---------------------ELKPDSRTM 435

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
             +L AC+     ++G E  +G   + G          +VDL  + G L  A  L+  M+
Sbjct: 436 ACILPACASLSALERGKE-IHGYILRNGYSSDRHVANALVDLYVKCGVLGLA-RLLFDMI 493

Query: 313 VEPDGAVWGALLGACKIH 330
              D   W  ++    +H
Sbjct: 494 PSKDLVSWTVMIAGYGMH 511



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 143/288 (49%), Gaps = 19/288 (6%)

Query: 81  DFSVGNCLMTMYVKCG----SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY 136
           DF    CL  + V+ G      +   +LFD++ ++ +I+WN+MISGY  NGL    L +Y
Sbjct: 180 DFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIY 239

Query: 137 REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196
           ++M  LG+  D  T + VL  CA+ G  S+G  V      + F      +N L++MY++C
Sbjct: 240 KQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKC 299

Query: 197 GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL 256
           G+L  A  +F+ M  + VVSWT++I GY   G  + A+ L  +M K G++ D  A  S+L
Sbjct: 300 GDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSIL 359

Query: 257 SACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC--MVDLLGRAGQLNEALELIESMLVE 314
            AC+ +G  D G +    +K           + C  ++D+  + G +  A  +  +M+V+
Sbjct: 360 HACARSGSLDNGKDVHDYIKAN---NMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVK 416

Query: 315 PDGAVWGALLG---------ACKIHKNVELAELAFGKVIKLEPMNTGY 353
            D   W  ++G         AC +     L+ L  GK I    +  GY
Sbjct: 417 -DIISWNTMVGELKPDSRTMACILPACASLSALERGKEIHGYILRNGY 463



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 85/176 (48%), Gaps = 18/176 (10%)

Query: 116 WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175
           +NA I  + Q G   + +EL    +   +  +  T+  VL  CA L + + G +V   I+
Sbjct: 69  YNAKILHFCQLGDLENAMELVCMCQKSEL--ETKTYGSVLQLCAGLKSLTDGKKVHSIIK 126

Query: 176 ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQ 235
           +N  G +  L   L++ YA CG+LK+ R +FD M +K V  W  ++  Y   G  + ++ 
Sbjct: 127 SNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESIC 186

Query: 236 LFDEMLKSGI---RP-------------DGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           LF  M++ GI   RP             D  ++ S++S     GLT++GL  +  M
Sbjct: 187 LFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQM 242


>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
 gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 602

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/512 (39%), Positives = 310/512 (60%), Gaps = 12/512 (2%)

Query: 16  NALISGYV---LNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD-PGYLWLGMCCHC 71
           N LI  +    ++SL   A + F  M    V  N  T   LL  C   PG   +G+  H 
Sbjct: 92  NTLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHA 151

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKC---GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
             +KFG   D  V N L+ MY  C   G +   R +FD++P++  +TW+AMI GY + GL
Sbjct: 152 AALKFGFATDQYVSNTLIHMY-SCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGL 210

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
           ++  ++L+REM++ GV  D VT +GVL++   LGA  +   V + ++  G G +  L NA
Sbjct: 211 SSDAVDLFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNA 270

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           LI+  A+CG++  A A+F+GM +++VVSWT++I    + G G+ AV++F+EM  +G+ PD
Sbjct: 271 LIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPD 330

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
             AF+ VL+ACSHAG+ D+G  YF  MK +YG++P  EHY CMVD+ GRAG +  A+E +
Sbjct: 331 DVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFV 390

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
            +M ++P+  +W +L+ AC+ H  +EL E     ++   P +   Y++LSN+++  +   
Sbjct: 391 RTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNVFALTQRWK 450

Query: 369 GIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHD 428
               +R  M +R +KK PG S VEL G VH F+ GD +H Q  +IYRM++++   ++   
Sbjct: 451 EKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIYRMVEEMARELRRVG 510

Query: 429 GTKRSDQK----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
               + +     + E+     + HSEKLAIAF ++ T PGT++ V+KNLR+C DCH  IK
Sbjct: 511 HIAATSEVLLDLDEEDKEGALQWHSEKLAIAFALLRTPPGTQVRVVKNLRVCSDCHAAIK 570

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +S++  R+ +VRD +RFH FK G CSCKD+W
Sbjct: 571 CISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 123/244 (50%), Gaps = 6/244 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD   K + +T  ++A+I GYV   L S+AV LF +M+  GV+ + VT++ +L    D 
Sbjct: 186 VFDRMPKESAVT--WSAMIGGYVRGGLSSDAVDLFREMQANGVQADEVTVIGVLAAATDL 243

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L L         + G+    ++ N L+    KCG VD    +F+ + ++ +++W ++I
Sbjct: 244 GALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVI 303

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
              A  G     + ++ EMK  GV PD V F+GVL++C+H G    G      ++   +G
Sbjct: 304 DALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVE-YG 362

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLF 237
             P + +   +++M+ R G +++A      MP +   V W +++     HG  E+   + 
Sbjct: 363 IEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESIT 422

Query: 238 DEML 241
             +L
Sbjct: 423 RSLL 426


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/521 (41%), Positives = 316/521 (60%), Gaps = 8/521 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE ++    T  +NA++SG +        + LF +M E G   +  T+  +L  C   
Sbjct: 45  VFDEMLERNVAT--WNAMVSGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCAGL 102

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
              + G   H   +K+G + +  VG+ L  MY+K GS+  G K+   +  + ++ WN +I
Sbjct: 103 RASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLI 162

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +G AQNG    VL+LY  MK  G+ PD +T V V+SS A L     G ++  +    G  
Sbjct: 163 AGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIKAGAN 222

Query: 181 SNPFLNNALINMYARCGNLKKA-RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
           S   + ++LI+MY++CG L+ + +A+ D     +V+ W+++I  YG HG GE AV LF++
Sbjct: 223 SAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVL-WSSMIAAYGFHGRGEEAVHLFEQ 281

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M + G+  +   F+S+L ACSH GL +KG+ +F  M  KYGL+P  EHYTC+VDLLGR+G
Sbjct: 282 MEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSG 341

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
            L+EA  +I SM +E D  +W  LL AC+IH+N ++A     ++++L P ++  YVLLSN
Sbjct: 342 CLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATRTAEEILRLNPQDSATYVLLSN 401

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
           I++ A+    + +VR  MR+R +KK+PG S++E+K RV  F +GD++H  + EI   L +
Sbjct: 402 IHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNRVFQFSMGDKSHPMSEEIDLYLKE 461

Query: 420 LENLVQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRI 475
           L   ++      D        +SEE  N    HSEKLAIAFG++N  PG+ I VMKNLRI
Sbjct: 462 LMEEMKLRGYVPDTATVFHDTDSEEKENSLVNHSEKLAIAFGLMNIPPGSPIRVMKNLRI 521

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           C DCH+ IKL+S I +R+ IVRD +RFHHFK G CSC DYW
Sbjct: 522 CSDCHVAIKLISDINNREIIVRDTSRFHHFKHGKCSCGDYW 562



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 138/281 (49%), Gaps = 3/281 (1%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+  +V+ G +D   K+FD++ E+ + TWNAM+SG  Q     + L L+REM  LG  
Sbjct: 27  NILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHELGFL 86

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           PD  T   VL  CA L A   G +V   +   G+  N  + ++L +MY + G+L +   +
Sbjct: 87  PDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKV 146

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
              M  + VV+W  +I G   +GH E  + L++ M  SG+RPD    VSV+S+ +     
Sbjct: 147 IKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATL 206

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
            +G +  +    K G        + ++ +  + G L ++++ +      PD  +W +++ 
Sbjct: 207 FQG-QQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLD-CEHPDSVLWSSMIA 264

Query: 326 ACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366
           A   H   E A   F + ++ E +       LS +Y+ + N
Sbjct: 265 AYGFHGRGEEAVHLFEQ-MEQEGLGGNDVTFLSLLYACSHN 304



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 19/196 (9%)

Query: 179 FGSNPFLN----NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
           F + P  N    N LIN + + G+L  A  +FD M  + V +W A++ G       E  +
Sbjct: 15  FNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGL 74

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN------KYGLQPGPEHY 288
            LF EM + G  PD     SVL  C+       GL   Y  K       KYG +      
Sbjct: 75  FLFREMHELGFLPDEFTLGSVLRGCA-------GLRASYAGKQVHAYVLKYGYEFNLVVG 127

Query: 289 TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEP 348
           + +  +  ++G L E  ++I++M +  +   W  L+     + + E   L    ++K+  
Sbjct: 128 SSLAHMYMKSGSLGEGEKVIKAMRIR-NVVAWNTLIAGNAQNGHFE-GVLDLYNMMKMSG 185

Query: 349 MNTGYYVLLSNIYSEA 364
           +      L+S I S A
Sbjct: 186 LRPDKITLVSVISSSA 201



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 7/108 (6%)

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY + G +++A A F+ MP + ++S   +I G+  HG  + A+++FDEML+  +      
Sbjct: 1   MYFKMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNV----AT 56

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           + +++S        + GL  F  M   + L   P+ +T    L G AG
Sbjct: 57  WNAMVSGLIQFEFNENGLFLFREM---HELGFLPDEFTLGSVLRGCAG 101


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/509 (39%), Positives = 309/509 (60%), Gaps = 26/509 (5%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + ++I+GY  +     A+ L  +M ++GV+++ V +  +L  C   G L  G   H  
Sbjct: 180 VSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDY 239

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
                +  +  V N LM MY KCGS++    +F  +  K +I+WN M+            
Sbjct: 240 IKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG----------- 288

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
                E+K     PD+ T   +L +CA L A   G E+   I  NG+ S+  + NAL+++
Sbjct: 289 -----ELK-----PDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDL 338

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CG L  AR +FD +P K +VSWT +I GYG+HG+G  A+  F+EM  +GI PD  +F
Sbjct: 339 YVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSF 398

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +S+L ACSH+GL ++G  +FY MKN + ++P  EHY CMVDLL R G L++A + IE++ 
Sbjct: 399 ISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLP 458

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           + PD  +WGALL  C+I+ ++ELAE    +V +LEP NTGYYVLL+NIY+EA   + + R
Sbjct: 459 IAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKR 518

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHH-QTVEIYRMLDKLENLVQEHDGTK 431
           +R  + ++ L+K+PG S++E+KGRV+LF+ G+ + H  + +I  +L K+   ++E     
Sbjct: 519 MREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFP 578

Query: 432 RSDQK--NSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           ++     N++E   +  +  HSEKLA+AFG++   P   I V KNLR+CGDCH   K +S
Sbjct: 579 KTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMS 638

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K   R+ ++RD+ RFHHFK G+CSC+ +W
Sbjct: 639 KETRREIVLRDSNRFHHFKDGYCSCRGFW 667



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 160/318 (50%), Gaps = 23/318 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N++ISGYV N L    + ++ +M   G++++  T++ +L  C   G L LG   H +
Sbjct: 79  ISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAKSGTLSLGKAVHSL 138

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K   +   +  N L+ MY KCG +D   ++F+++ E+ +++W +MI+GY ++G +   
Sbjct: 139 AIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGA 198

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + L ++M+  GV  D V    +L +CA  G+   G +V   I+AN   SN F+ NAL++M
Sbjct: 199 IILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDM 258

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG+++ A ++F  M  K ++SW  ++G                      ++PD    
Sbjct: 259 YAKCGSMEGANSVFSTMVVKDIISWNTMVG---------------------ELKPDSRTM 297

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
             +L AC+     ++G E  +G   + G          +VDL  + G L  A  L+  M+
Sbjct: 298 ACILPACASLSALERGKE-IHGYILRNGYSSDRHVANALVDLYVKCGVLGLA-RLLFDMI 355

Query: 313 VEPDGAVWGALLGACKIH 330
              D   W  ++    +H
Sbjct: 356 PSKDLVSWTVMIAGYGMH 373



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 142/288 (49%), Gaps = 19/288 (6%)

Query: 81  DFSVGNCLMTMYVKCG----SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY 136
           DF    CL  + V+ G      +   +LFD++ ++ +I+WN+MISGY  NGL    L +Y
Sbjct: 42  DFKESICLFKIMVEKGIEGKRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIY 101

Query: 137 REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196
           ++M  LG+  D  T + VL  CA  G  S+G  V      + F      +N L++MY++C
Sbjct: 102 KQMMYLGIDVDLATIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKC 161

Query: 197 GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL 256
           G+L  A  +F+ M  + VVSWT++I GY   G  + A+ L  +M K G++ D  A  S+L
Sbjct: 162 GDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSIL 221

Query: 257 SACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC--MVDLLGRAGQLNEALELIESMLVE 314
            AC+ +G  D G +    +K           + C  ++D+  + G +  A  +  +M+V+
Sbjct: 222 HACARSGSLDNGKDVHDYIKAN---NMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVK 278

Query: 315 PDGAVWGALLG---------ACKIHKNVELAELAFGKVIKLEPMNTGY 353
            D   W  ++G         AC +     L+ L  GK I    +  GY
Sbjct: 279 -DIISWNTMVGELKPDSRTMACILPACASLSALERGKEIHGYILRNGY 325



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 52/174 (29%)

Query: 189 LINMYARCGNLKKARAIFDGMPRKT----------------------------------- 213
           L++ YA CG+LK+ R +FD M +K                                    
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 214 ----------------VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257
                           V+SW ++I GY  +G  E  + ++ +M+  GI  D    +SVL 
Sbjct: 62  RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 121

Query: 258 ACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            C+ +G    G +  + +  K   +        ++D+  + G L+ AL + E M
Sbjct: 122 GCAKSGTLSLG-KAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKM 174


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/514 (39%), Positives = 310/514 (60%), Gaps = 15/514 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V +N+LI+GY  +    E +  F KM +   + +SVT + LL I      +  G   HC
Sbjct: 388 SVTWNSLINGYTQSGYYKEGLESF-KMMKMERKPDSVTFVLLLSIFSQLADINQGRGIHC 446

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +KFG + +  +GN L+ +Y KCG +D   K+F  +    +I+WN +I+        T 
Sbjct: 447 DVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTV 506

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
             ++  EM++ G+ PD  T +G+L  C+ L     G E+   I  +GF SN  + NALI 
Sbjct: 507 GFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIE 566

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY++CG+L+    +F  M  K VV+WTA+I  +G++G G+ A++ F +M  SG+ PD  A
Sbjct: 567 MYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVA 626

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F++ + ACSH+G+  +GL +F  MK  Y L+P  EHY C+VDLL R+G L +A E I SM
Sbjct: 627 FIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSM 686

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            ++PD ++WGALL AC+   N  +A+    K+++L   +TGYYVL+SNIY+     D + 
Sbjct: 687 PMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVK 746

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
            VR  M+ + LKK+PG S++E++ RV++F  GD++  Q  ++  +L+ L  L+      K
Sbjct: 747 TVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEYLVRLM-----AK 801

Query: 432 RSDQKNSEEHLNDTEV---------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLF 482
                + +  L+D E          HSE+LAIAFG++NT PG+ ++VMKNLR+CGDCH  
Sbjct: 802 EGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNTKPGSPLLVMKNLRVCGDCHTV 861

Query: 483 IKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            K ++KI+ R+ +VRDA RFH FK G CSC D+W
Sbjct: 862 TKYITKIMQREILVRDANRFHRFKDGACSCGDHW 895



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 184/370 (49%), Gaps = 13/370 (3%)

Query: 4   ESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL 63
            SI  T+    +N++I     N L ++A+  + +MRE+ ++ ++ T   ++  C     L
Sbjct: 78  RSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDL 137

Query: 64  WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGY 123
            LG   H   ++ G + D  +GN L+ MY +   +D  R +F+++  +  ++WN++ISGY
Sbjct: 138 ELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGY 197

Query: 124 AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP 183
             NG     L++Y + +  G+ PD  T   VL +C  L A   G+ V   I+  G   + 
Sbjct: 198 CSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDV 257

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
            + N L++MY +   L++AR +F  M  K  V+W  +I GY   G  E +V+LF +M+  
Sbjct: 258 IIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMI-D 316

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC----MVDLLGRAG 299
           G  PD  +  S + AC  +G    G        +KY +  G E  T     ++D+  + G
Sbjct: 317 GFVPDMLSITSTIRACGQSGDLQVG-----KFVHKYLIGSGFECDTVACNILIDMYAKCG 371

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE-PMNTGYYVLLS 358
            L  A E+ ++   + D   W +L+         +    +F K++K+E   ++  +VLL 
Sbjct: 372 DLLAAQEVFDTTKCK-DSVTWNSLINGYTQSGYYKEGLESF-KMMKMERKPDSVTFVLLL 429

Query: 359 NIYSEARNLD 368
           +I+S+  +++
Sbjct: 430 SIFSQLADIN 439



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 139/285 (48%), Gaps = 8/285 (2%)

Query: 5   SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLW 64
           S  S H  + +N +I+  V     +    +  +MR +G+  +  T+L +LP+C       
Sbjct: 481 SYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRR 540

Query: 65  LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYA 124
            G   H    K G + +  +GN L+ MY KCGS++   K+F  + EK ++TW A+IS + 
Sbjct: 541 QGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFG 600

Query: 125 QNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF 184
             G     L+ +++M+  GV PD+V F+  + +C+H G    GL    +++ + +   P 
Sbjct: 601 MYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTD-YNLEPR 659

Query: 185 LNN--ALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFDEML 241
           + +   ++++ AR G L +A      MP K   S W A++      G+  +A ++  ++L
Sbjct: 660 MEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKIL 719

Query: 242 KSGIRPDGTAFVSVLSAC-SHAGLTDKGLEYFYGMKNKYGLQPGP 285
           +  +  D T +  ++S   +  G  D+       MK K GL+  P
Sbjct: 720 E--LNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTK-GLKKEP 761


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/509 (39%), Positives = 308/509 (60%), Gaps = 26/509 (5%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + ++I+GY  +     A+ L  +M ++GV+++ V +  +L  C   G L  G   H  
Sbjct: 318 VSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDY 377

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
                ++ +  V N LM MY KCGS++    +F  +  K +I+WN MI            
Sbjct: 378 IKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIG----------- 426

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
                E+K     PD+ T   VL +CA L A   G E+   I  NG+ S+  + NAL+++
Sbjct: 427 -----ELK-----PDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDL 476

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CG L  AR +FD +P K +VSWT +I GYG+HG+G  A+  F+EM  +GI PD  +F
Sbjct: 477 YVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSF 536

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +S+L ACSH+GL ++G  +FY MKN + ++P  EHY CMVDLL R G L++A E +E++ 
Sbjct: 537 ISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLP 596

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           + PD  +WGALL  C+ + ++ELAE    +V +LEP NTGYYVLL+NIY+EA   + + R
Sbjct: 597 IAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKR 656

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHH-QTVEIYRMLDKLENLVQE--HDG 429
           +R  + ++ L+K+PG S++E+KG+V+LF+ G+ + H  +  I  +L K+   ++E  H  
Sbjct: 657 LREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFP 716

Query: 430 TKRSDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
             +    N++E   +  +  HSEKLA+AFG++   P   I V KNLR+CGDCH   K +S
Sbjct: 717 KTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMS 776

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K   R+ ++RD+ RFHHFK G+CSC+ +W
Sbjct: 777 KETRREIVLRDSNRFHHFKDGYCSCRGFW 805



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 162/318 (50%), Gaps = 23/318 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N++ISGYV N L    + ++ +M   G++++  T++ +L  C + G L LG   H +
Sbjct: 217 ISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSL 276

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K   +   +  N L+ MY KCG +D   ++F+++ E+ +++W +MI+GY ++G +   
Sbjct: 277 AIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGA 336

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           ++L ++M+  GV  D V    +L +CA  G+   G +V   I+AN   SN F+ NAL++M
Sbjct: 337 IKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDM 396

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG+++ A ++F  M  K ++SW  +IG                      ++PD    
Sbjct: 397 YAKCGSMEAANSVFSTMVVKDIISWNTMIG---------------------ELKPDSRTM 435

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
             VL AC+     ++G E  +G   + G          +VDL  + G L  A  L+  M+
Sbjct: 436 ACVLPACASLSALERGKE-IHGYILRNGYSSDRHVANALVDLYVKCGVLGLA-RLLFDMI 493

Query: 313 VEPDGAVWGALLGACKIH 330
              D   W  ++    +H
Sbjct: 494 PSKDLVSWTVMIAGYGMH 511



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 151/300 (50%), Gaps = 23/300 (7%)

Query: 81  DFSVGNCLMTMYVKCG----SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY 136
           DF    CL  + V+ G      +   +LFD++ ++ +I+WN+MISGY  NGL    L +Y
Sbjct: 180 DFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIY 239

Query: 137 REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196
           ++M  LG+  D  T + VL  CA+ G  S+G  V      + F      +N L++MY++C
Sbjct: 240 KQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKC 299

Query: 197 GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL 256
           G+L  A  +F+ M  + VVSWT++I GY   G  + A++L  +M K G++ D  A  S+L
Sbjct: 300 GDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSIL 359

Query: 257 SACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPD 316
            AC+ +G  D G +    +K    ++        ++D+  + G +  A  +  +M+V+ D
Sbjct: 360 HACARSGSLDNGKDVHDYIKAN-NMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVK-D 417

Query: 317 GAVWGALLG---------ACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNL 367
              W  ++G         AC +     L+ L  GK I       GY  +L N YS  R++
Sbjct: 418 IISWNTMIGELKPDSRTMACVLPACASLSALERGKEIH------GY--ILRNGYSSDRHV 469



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 26/180 (14%)

Query: 116 WNAMISGYAQNGLATHVLELYREMKSLGVCP----DAVTFVGVLSSCAHLGAHSVGLEVE 171
           +NA I  + Q G   + +EL      + +C     +  T+  VL  CA L + + G +V 
Sbjct: 69  YNAKILHFCQLGDLENAMEL------ICMCQKSELETKTYGSVLQLCAGLKSFTDGKKVH 122

Query: 172 QQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGE 231
             I++N  G +  L   L++ YA CG+LK+ R +FD M +K V  W  ++  Y   G  +
Sbjct: 123 SIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFK 182

Query: 232 VAVQLFDEMLKSGI---RP-------------DGTAFVSVLSACSHAGLTDKGLEYFYGM 275
            ++ LF  M++ GI   RP             D  ++ S++S     GLT++GL  +  M
Sbjct: 183 ESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQM 242


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/504 (39%), Positives = 316/504 (62%), Gaps = 10/504 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++I+ Y  N+  S A+  F  M+  G+  + +T++ L  I        +       
Sbjct: 289 VSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGF 348

Query: 73  CVKFG-LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
            ++   LD D  +GN L+ MY K G ++    +FDQ+P K  I+WN +++GY QNGLA+ 
Sbjct: 349 VIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASE 408

Query: 132 VLELYREMKSL-GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
            ++ Y  M+      P+  T+V ++ + +H+GA   G+++  ++  N    + F+   LI
Sbjct: 409 AIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLI 468

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           ++Y +CG L+ A ++F  +PR T V W AII   GIHG GE A+QLF +ML   ++ D  
Sbjct: 469 DLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHI 528

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            FVS+LSACSH+GL D+G + F  M+ +YG++P  +HY CMVDLLGRAG L +A EL+ +
Sbjct: 529 TFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRN 588

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M ++PD ++WGALL ACKI+ N EL  LA  ++++++  N GYYVLLSNIY+     +G+
Sbjct: 589 MPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGV 648

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD----KLENL--V 424
           ++VR + R+R L+K PG+S V +  +  +F  G++ H +  EIY+ L     K+++L  V
Sbjct: 649 IKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYV 708

Query: 425 QEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
            ++    +  +++ +E + ++  HSE+LAIAFGII+T P + I + KNLR+CGDCH   K
Sbjct: 709 PDYSFVYQDIEEDEKEQILNS--HSERLAIAFGIISTPPRSPIRIFKNLRVCGDCHNATK 766

Query: 485 LVSKIVDRQFIVRDATRFHHFKSG 508
            +S+I +R+ +VRD+ RFHHFK G
Sbjct: 767 YISRISEREIVVRDSNRFHHFKDG 790



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 175/333 (52%), Gaps = 6/333 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NA+ISG+  N   + A+ +  +M+ +GV+++++T+  +LP+C     +  G+  H   +
Sbjct: 190 WNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVL 249

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K GLD D  V N L+ MY K G +   + +FDQ+  + L++WN++I+ Y QN   +  L 
Sbjct: 250 KHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALR 309

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ-QIQANGFGSNPFLNNALINMY 193
            ++ M+  G+ PD +T V + S  + L    +   +    I+      +  + NAL+NMY
Sbjct: 310 FFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMY 369

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK-SGIRPDGTAF 252
           A+ G +  A  +FD +PRK  +SW  ++ GY  +G    A+  ++ M +     P+   +
Sbjct: 370 AKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTW 429

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           VS++ A SH G   +G++  +    K  L       TC++DL G+ G+L +A+ L     
Sbjct: 430 VSIIPAYSHVGALQQGMK-IHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYE-- 486

Query: 313 VEPDGAV-WGALLGACKIHKNVELAELAFGKVI 344
           +  D +V W A++ +  IH   E A   F  ++
Sbjct: 487 IPRDTSVPWNAIIASLGIHGRGEEALQLFKDML 519



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/267 (32%), Positives = 129/267 (48%), Gaps = 29/267 (10%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLC--------------LLPICVDP 60
           +N++IS YV           FGK  E    +N +  +C              +L  CV  
Sbjct: 88  WNSIISAYVR----------FGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVS- 136

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   HC   K G + D  V   L+ +Y + G +D   K+F  +P K + +WNAMI
Sbjct: 137 --LVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMI 194

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SG+ QNG A   L +   MK  GV  D +T   +L  CA       G+ +   +  +G  
Sbjct: 195 SGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLD 254

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S+ F++NALINMY++ G L+ A+ +FD M  + +VSW +II  Y  +     A++ F  M
Sbjct: 255 SDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGM 314

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDK 267
              GIRPD    VS+ S  S   L+D+
Sbjct: 315 QLGGIRPDLLTVVSLTSIFSQ--LSDQ 339



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 125/246 (50%), Gaps = 7/246 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICVD 59
           VFD+  +    T+ +N L++GY  N L SEA+  +  M E +    N  T + ++P    
Sbjct: 381 VFDQLPRKD--TISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSH 438

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
            G L  GM  H   +K  L LD  V  CL+ +Y KCG ++    LF ++P    + WNA+
Sbjct: 439 VGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAI 498

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I+    +G     L+L+++M +  V  D +TFV +LS+C+H G    G +    +Q   +
Sbjct: 499 IASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKE-Y 557

Query: 180 GSNPFLNN--ALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQL 236
           G  P L +   ++++  R G L+KA  +   MP +   S W A++    I+G+ E+    
Sbjct: 558 GIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLA 617

Query: 237 FDEMLK 242
            D +L+
Sbjct: 618 SDRLLE 623



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 136/282 (48%), Gaps = 12/282 (4%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H + + FG   +  +   L+ +YV  G +   R  FD + +K + +WN++IS Y + G  
Sbjct: 42  HALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKY 101

Query: 130 THVLELYREMKSL----GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
              +    ++ S+     + PD  TF  +L +C  L     G +V   +   GF  + F+
Sbjct: 102 HEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFKMGFEDDVFV 158

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
             +L+++Y+R G L  A  +F  MP K V SW A+I G+  +G+   A+ + + M   G+
Sbjct: 159 AASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGV 218

Query: 246 RPDGTAFVSVLSACSHAGLTDKG-LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
           + D     S+L  C+ +     G L + + +  K+GL         ++++  + G+L +A
Sbjct: 219 KMDTITVASILPVCAQSDDVINGVLIHLHVL--KHGLDSDVFVSNALINMYSKFGRLQDA 276

Query: 305 LELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
             + + M V  D   W +++ A + + +   A L F K ++L
Sbjct: 277 QMVFDQMEVR-DLVSWNSIIAAYEQNNDPSTA-LRFFKGMQL 316


>gi|356570245|ref|XP_003553300.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g26782, mitochondrial-like [Glycine max]
          Length = 555

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/529 (40%), Positives = 322/529 (60%), Gaps = 21/529 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM---------REQGVEINSVTML 51
           +FDE    +   V + ++I+G V N    +AV +F ++          E GV ++SV + 
Sbjct: 35  LFDEIPDRS--VVSWTSIIAGCVQNDRARDAVRVFKELLVEESGSVESEDGVFVDSVLLG 92

Query: 52  CLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK 111
           C++      G+  +    H + +K G +    VGN LM  Y K G +    K+FD + E 
Sbjct: 93  CVVSAFSKLGWRGVTEGVHGLVIKRGFERCVGVGNTLMDAYAKFGEMGVA-KVFDGMNES 151

Query: 112 GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVE 171
               WN++I+ YAQNGL+     ++ +M   G       +  V+      GA  +G  + 
Sbjct: 152 DHYFWNSVIAEYAQNGLSAEAFSVFGDMVKSG----NFRYNAVIMDXGLSGALQLGKCIH 207

Query: 172 QQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGE 231
            Q+       + F+  +++++Y +C  ++ AR  FD M  K V SWTA++ GYG+HG  +
Sbjct: 208 HQVIKMDLEDSVFVGTSIVDIYCKCERVEMARKAFDCMKVKNVKSWTAMVAGYGMHGRAK 267

Query: 232 VAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCM 291
            A+++F +M++SG++P+   FVSVL+ACSHAG+  +G  +F  MK ++ ++PG EHY CM
Sbjct: 268 EAMEIFYKMIRSGVKPNYITFVSVLAACSHAGMLKEGXHWFNRMKCEFIVEPGIEHYLCM 327

Query: 292 VDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351
           VDLLGRAG L     LI+ M  +PD  +WG+LLGAC+IHKNVEL E++  K+ +L+  N 
Sbjct: 328 VDLLGRAGYLX-CYGLIKEMNAKPDFIIWGSLLGACRIHKNVELGEISARKLFELDXSNC 386

Query: 352 GYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTV 411
           GYYVLLSNIY++A   D + R+R++M+ R L K PG+S VELKGR+H+ +VGD+ H Q  
Sbjct: 387 GYYVLLSNIYADAGRWDEVERMRILMKSRGLLKAPGFSIVELKGRIHVLLVGDKEHPQHE 446

Query: 412 EIYRMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEI 467
           +IY  LDK    +QE       +      + EE      VHSEKLA+AFGI+N+ PG+ I
Sbjct: 447 KIYEYLDKXNVKLQELGYMPNXNMVLHDVDEEEKGMVLRVHSEKLAVAFGIMNSVPGSII 506

Query: 468 VVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            ++KNLRICGDC++ IKL+ K+V+R+ +VRD+ RFHHFK G CSC DYW
Sbjct: 507 HIIKNLRICGDCNVVIKLIFKVVNREIVVRDSKRFHHFKEGSCSCGDYW 555



 Score = 42.7 bits (99), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 23/173 (13%)

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           ++PF  N              +R +FD +P ++VVSWT+II G   +     AV++F E+
Sbjct: 24  TDPFFGN-------------DSRHLFDEIPDRSVVSWTSIIAGCVQNDRARDAVRVFKEL 70

Query: 241 L--KSGI--RPDGTAFVSVLSACSHAGLTDKGL----EYFYGMKNKYGLQPGPEHYTCMV 292
           L  +SG     DG    SVL  C  +  +  G     E  +G+  K G +        ++
Sbjct: 71  LVEESGSVESEDGVFVDSVLLGCVVSAFSKLGWRGVTEGVHGLVIKRGFERCVGVGNTLM 130

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345
           D   + G++  A ++ + M  E D   W +++     +     A   FG ++K
Sbjct: 131 DAYAKFGEMGVA-KVFDGM-NESDHYFWNSVIAEYAQNGLSAEAFSVFGDMVK 181


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/523 (40%), Positives = 311/523 (59%), Gaps = 10/523 (1%)

Query: 1   VFDE-SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD 59
           +FDE  IK     V +NA+ISGY       EA+ LF +M +  V  +  TM+ ++  C  
Sbjct: 191 MFDEIPIKDV---VSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQ 247

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              + LG   H      G   +  + N L+ +Y+KCG V+    LF+ +  K +I+WN +
Sbjct: 248 SASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTL 307

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI--QAN 177
           I GY    L    L L++EM   G  P+ VT + +L +CAHLGA  +G  +   I  +  
Sbjct: 308 IGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLK 367

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
           G  +      +LI+MYA+CG+++ A+ +FD +  +++ SW A+I G+ +HG    A  +F
Sbjct: 368 GVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIF 427

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
             M K+ I PD   FV +LSACSH+G+ D G   F  MK  Y + P  EHY CM+DLLG 
Sbjct: 428 SRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGH 487

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
           +G   EA E+I +M +EPDG +W +LL ACK++ NVEL E     +IK+EP N G YVLL
Sbjct: 488 SGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYVLL 547

Query: 358 SNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML 417
           SNIY+ A   + + ++R ++ ++ +KK PG S +E+   VH F++GD+ H +  EIY ML
Sbjct: 548 SNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGML 607

Query: 418 DKLENLVQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
           +++E L++E     D ++   +   E        HSEKLAIAFG+I+T PGT++ ++KNL
Sbjct: 608 EEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNL 667

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           R+C +CH   KL+SKI  R+ I RD TRFHHF+ G CSC DYW
Sbjct: 668 RVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/389 (31%), Positives = 193/389 (49%), Gaps = 36/389 (9%)

Query: 4   ESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL 63
           E+I+  +L + +N +  G+ L+S    A+ L+  M   G+  N  T   LL  C      
Sbjct: 61  ETIQEPNLLI-WNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAF 119

Query: 64  WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQ---------------- 107
             G   H   +K G DLD  V   L++MYV+ G ++  RK+FDQ                
Sbjct: 120 REGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGY 179

Query: 108 ---------------VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFV 152
                          +P K +++WNAMISGYA+ G     LEL++EM    V PD  T V
Sbjct: 180 ASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMV 239

Query: 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK 212
            V+S+CA   +  +G +V   I  +GFGSN  + NALI++Y +CG ++ A  +F+G+  K
Sbjct: 240 SVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYK 299

Query: 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-Y 271
            V+SW  +IGGY      + A+ LF EML+SG  P+    +S+L AC+H G  + G   +
Sbjct: 300 DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIH 359

Query: 272 FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHK 331
            Y  K   G+     H T ++D+  + G +  A ++ +S+L     + W A++    +H 
Sbjct: 360 VYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSS-WNAMIFGFAMHG 418

Query: 332 NVELAELAFGKVIK--LEPMNTGYYVLLS 358
               A   F ++ K  +EP +  +  LLS
Sbjct: 419 RANAAFDIFSRMRKNEIEPDDITFVGLLS 447



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 122/257 (47%), Gaps = 33/257 (12%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           Y   +F+ + E  L+ WN M  G+A +      L LY  M SLG+ P+  TF  +L SCA
Sbjct: 55  YAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCA 114

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
              A   G ++   +   G+  + +++ +LI+MY + G L+ AR +FD    + VVS+TA
Sbjct: 115 KSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTA 174

Query: 220 IIGGYG--------------------------IHGHGEV-----AVQLFDEMLKSGIRPD 248
           +I GY                           I G+ E      A++LF EM+K+ +RPD
Sbjct: 175 LITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPD 234

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
            +  VSV+SAC+ +   + G +  +   + +G     +    ++DL  + G++  A  L 
Sbjct: 235 ESTMVSVVSACAQSASIELGRQ-VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLF 293

Query: 309 ESMLVEPDGAVWGALLG 325
           E  L   D   W  L+G
Sbjct: 294 EG-LSYKDVISWNTLIG 309


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/540 (37%), Positives = 308/540 (57%), Gaps = 35/540 (6%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +N +I GY  N+     + L+ +M+  G E +++ +  +L  C   G L  G   H 
Sbjct: 182 VVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQ 241

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP---------------------- 109
                G  +   +   L+ MY  CG++   R+++DQ+P                      
Sbjct: 242 FIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQD 301

Query: 110 ---------EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160
                    EK L+ W+AMISGYA++      L+L+ EM+   + PD +T + V+S+CA+
Sbjct: 302 ARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACAN 361

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           +GA      +      NGFG    +NNALI+MYA+CGNL KAR +F+ MPRK V+SW+++
Sbjct: 362 VGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSM 421

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           I  + +HG  + A+ LF  M +  I P+G  F+ VL ACSHAGL ++G ++F  M N++ 
Sbjct: 422 INAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHR 481

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           + P  EHY CMVDL  RA  L +A+ELIE+M   P+  +WG+L+ AC+ H  +EL E A 
Sbjct: 482 ISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAA 541

Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400
            ++++LEP + G  V+LSNIY++ +  D +  VR +M+ + + K+   S +E+   VH+F
Sbjct: 542 TRLLELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNEVHVF 601

Query: 401 MVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAF 456
           M+ DR H Q+ EIY+ LD + + ++    T  +         EE       HSEKLA+ +
Sbjct: 602 MMADRYHKQSDEIYKKLDAVVSQLKLVGYTPSTSGILVDLEEEEKKEVVLWHSEKLALCY 661

Query: 457 GIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           G+I     + I ++KNLRIC DCH F+KLVSK+   + ++RD TRFHHF  G CSC+DYW
Sbjct: 662 GLIGERKESCIRIVKNLRICEDCHSFMKLVSKVHRIEIVMRDRTRFHHFNGGICSCRDYW 721



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 182/370 (49%), Gaps = 42/370 (11%)

Query: 16  NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVK 75
           N L+  +         +SL+  +R  G  ++  +   LL        L LG+  H +  K
Sbjct: 84  NQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLEIHGLASK 143

Query: 76  FGL-DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           FG    D  + + L+ MY  CG +   R LFD++  + ++TWN MI GY+QN    HVL+
Sbjct: 144 FGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLK 203

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           LY EMK+ G  PDA+    VLS+CAH G  S G  + Q I+ NGF     +  +L+NMYA
Sbjct: 204 LYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYA 263

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYG--------------------------IHG 228
            CG +  AR ++D +P K +V  TA++ GY                           I G
Sbjct: 264 NCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISG 323

Query: 229 HGEV-----AVQLFDEMLKSGIRPDGTAFVSVLSACSHAG-LTDKGLEYFYGMKNKYGLQ 282
           + E      A+QLF+EM +  I PD    +SV+SAC++ G L      + Y  KN +G +
Sbjct: 324 YAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFG-R 382

Query: 283 PGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAV--WGALLGACKIHKNVELAELAF 340
             P +   ++D+  + G L +A E+ E+M   P   V  W +++ A  +H + + A   F
Sbjct: 383 TLPIN-NALIDMYAKCGNLVKAREVFENM---PRKNVISWSSMINAFAMHGDADSAIALF 438

Query: 341 GKVIK--LEP 348
            ++ +  +EP
Sbjct: 439 HRMKEQNIEP 448



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 131/259 (50%), Gaps = 6/259 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD  ++     VC++A+ISGY  +    EA+ LF +M+ + +  + +TML ++  C + 
Sbjct: 305 IFDRMVEKD--LVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANV 362

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L      H    K G      + N L+ MY KCG++   R++F+ +P K +I+W++MI
Sbjct: 363 GALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMI 422

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLE-VEQQIQANGF 179
           + +A +G A   + L+  MK   + P+ VTF+GVL +C+H G    G +     I  +  
Sbjct: 423 NAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRI 482

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
                    ++++Y R  +L+KA  + + MP    V+ W +++       HGE+ +  F 
Sbjct: 483 SPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMS--ACQNHGEIELGEFA 540

Query: 239 EMLKSGIRPDGTAFVSVLS 257
                 + PD    + VLS
Sbjct: 541 ATRLLELEPDHDGALVVLS 559



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 112/217 (51%), Gaps = 2/217 (0%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
            ++DY   LF  +P       N ++  +++     + L LY  ++  G   D  +F  +L
Sbjct: 63  SALDYALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLL 122

Query: 156 SSCAHLGAHSVGLEVEQQIQANGF-GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTV 214
            + + L A ++GLE+       GF  ++PF+ +ALI MYA CG +  AR +FD M  + V
Sbjct: 123 KAVSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDV 182

Query: 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYG 274
           V+W  +I GY  + H +  ++L++EM  SG  PD     +VLSAC+HAG    G      
Sbjct: 183 VTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQF 242

Query: 275 MKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           +K+  G + G    T +V++    G ++ A E+ + +
Sbjct: 243 IKDN-GFRVGSHIQTSLVNMYANCGAMHLAREVYDQL 278


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/509 (39%), Positives = 311/509 (61%), Gaps = 9/509 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +N+LISG+  +  +  +++ F  M+ E  V+ N VT+L ++  C   G L  G   H 
Sbjct: 106 VSWNSLISGF--SRCLHMSLTAFYTMKFEMSVKPNEVTILSMISAC--SGALDAGKYIHG 161

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K G  L+  V N L+ MY K G +    +LF+ +P+   ++WN++I+    NG A  
Sbjct: 162 FGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCARE 221

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            ++ + +M+ LG+  D  T + +L +C HLG   +   +   +   GFG+   +  AL++
Sbjct: 222 GIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLD 281

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
            YA+ G L  +  +F  +     V+WTA++ GY  HG G  A++LF+ M   G+ PD   
Sbjct: 282 TYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVT 341

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F  +LSACSH+GL ++G  YF  M   YG++P  +HY+CMVDLLGR G LN+A E+I++M
Sbjct: 342 FTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNM 401

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            +EP+  VWGALLGAC++H N+EL +     +I +EP++   Y++LSN+YS +R+     
Sbjct: 402 PMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAA 461

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
           +VR +++ER LK+ PGYS +E   + H F VGDR+H +T +IY  L++L   +++   + 
Sbjct: 462 KVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSS 521

Query: 432 RSDQ--KNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           +++   ++ EE + +  +  HSEKLAIAFG++ +  G  +++ KNLRICGDCH   KL+S
Sbjct: 522 KTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLIS 581

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            I  R  I+RD  RFHHF  GFCSC DYW
Sbjct: 582 LIEKRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 148/312 (47%), Gaps = 27/312 (8%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           TV +N++I+  V N    E +  F KMR  G+E +  T+L LL  C+  G   L    H 
Sbjct: 203 TVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHG 262

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           +    G     ++   L+  Y K G +     +F +V     + W AM++GYA +GL   
Sbjct: 263 LMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGRE 322

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN--NAL 189
            ++L+  M + G+ PD VTF  +LS+C+H G  + G +    + +  +G  P ++  + +
Sbjct: 323 AIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEG-KSYFNVMSEVYGIEPRVDHYSCM 381

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFDEMLK-SGIRP 247
           +++  RCG L  A  +   MP +     W A++G   +HG+ E+  ++ + ++    + P
Sbjct: 382 VDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDP 441

Query: 248 DGTAFVSVLSACS---------HAGLTDKGLEYF-------YGMKNKY---GLQPGPEH- 287
                +S + + S          A L ++GL+         YG KN +   G +  PE  
Sbjct: 442 RNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETE 501

Query: 288 --YTCMVDLLGR 297
             Y+ + +LLG+
Sbjct: 502 KIYSKLEELLGK 513



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 141/300 (47%), Gaps = 25/300 (8%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H    K  L  D  +G+ L+T Y K G  +   KLFD +P K L++WN++ISG+++  L 
Sbjct: 62  HARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSR-CLH 120

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA-------HSVGLEVEQQIQANGFGSN 182
             +   Y     + V P+ VT + ++S+C+  GA       H  G++V   ++       
Sbjct: 121 MSLTAFYTMKFEMSVKPNEVTILSMISACS--GALDAGKYIHGFGIKVGGTLEVK----- 173

Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
             + N+LINMY + G+L  A  +F+ +P    VSW +II     +G     +  F++M +
Sbjct: 174 --VANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRR 231

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
            GI  D    +++L AC H G+  K  E  +G+    G        T ++D   + G+L+
Sbjct: 232 LGIEQDEGTILALLQACLHLGV-GKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLS 290

Query: 303 EALELIESMLVEPDGAVWGALLGACKIH----KNVELAELAFGKVIKLEPMNTGYYVLLS 358
            +  +   +    D   W A+L     H    + ++L E    K   LEP +  +  LLS
Sbjct: 291 ASYGVFTEVGF-ADRVAWTAMLAGYAAHGLGREAIKLFESMANK--GLEPDHVTFTHLLS 347


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/506 (40%), Positives = 305/506 (60%), Gaps = 12/506 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N LISG+  N  + +A  LF  M E+    N V+   ++   V+ G L        +  
Sbjct: 170 WNTLISGFAQNGQMQKAFDLFSVMPEK----NGVSWSAMISGYVEHGDL---EAAEELYK 222

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             G+     V   ++T Y+K G V+   ++F ++  K L+TWN+MI+GY +N  A   L+
Sbjct: 223 NVGMK-SVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLK 281

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           +++ M    V P+ ++   VL  C++L A  +G ++ Q +  +    +     +LI+MY 
Sbjct: 282 VFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYC 341

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG+L  A  +F  MPRK V++W A+I GY  HG G  A+ LFD+M    ++PD   FV+
Sbjct: 342 KCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVA 401

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           V+ AC+HAG  D G++YF  MK ++G++  P HYTC++DLLGRAG+L+EA+ LI+ M   
Sbjct: 402 VILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFT 461

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
           P  A++G LLGAC+IHKN++LAE A   ++ L+P +   YV L+NIY+     D + +VR
Sbjct: 462 PHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVR 521

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLE---NLVQEHDGTK 431
            MM+E  + K PGYS++E+K   H F   DR H +   I++ L++L+    L       +
Sbjct: 522 KMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDLE 581

Query: 432 RSDQKNSEEHLNDTEV-HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIV 490
            +     EEH     + HSEKLAIAFG++ T+PGT I V KNLR+CGDCH  IK +S I 
Sbjct: 582 FALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAIE 641

Query: 491 DRQFIVRDATRFHHFKSGFCSCKDYW 516
            R+ IVRD TRFHHF++GFCSC DYW
Sbjct: 642 KREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 2/223 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++I+GYV N    + + +F  M E  V  N +++  +L  C +   L LG   H +
Sbjct: 261 VTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQL 320

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K  L  D +    L++MY KCG +D   KLF ++P K +ITWNAMISGYAQ+G     
Sbjct: 321 VSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKA 380

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN-GFGSNPFLNNALIN 191
           L L+ +M++  + PD +TFV V+ +C H G   +G++  + ++   G  + P     +I+
Sbjct: 381 LHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVID 440

Query: 192 MYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVA 233
           +  R G L +A ++   MP       +  ++G   IH + ++A
Sbjct: 441 LLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDLA 483



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 136/331 (41%), Gaps = 64/331 (19%)

Query: 8   STHLTVCYNALISGYV-LNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLG 66
           S   TV +N ++SGY  +   V EA  LF K+ E      ++ ++C L            
Sbjct: 100 SVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPEPDSVSYNIMLVCYL------------ 147

Query: 67  MCCHCICVKFGLDL-------DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
                  VK  L         D +  N L++ + + G +     LF  +PEK  ++W+AM
Sbjct: 148 ---RSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAM 204

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           ISGY ++G      ELY+                      ++G  SV +E          
Sbjct: 205 ISGYVEHGDLEAAEELYK----------------------NVGMKSVVVET--------- 233

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
                   A++  Y + G ++ A  IF  M  K +V+W ++I GY  +   E  +++F  
Sbjct: 234 --------AMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKT 285

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M++S +RP+  +  SVL  CS+      G +  + + +K  L       T ++ +  + G
Sbjct: 286 MIESRVRPNPLSLSSVLLGCSNLSALPLGRQ-MHQLVSKSPLSKDTTACTSLISMYCKCG 344

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIH 330
            L+ A +L   M    D   W A++     H
Sbjct: 345 DLDSAWKLFLEM-PRKDVITWNAMISGYAQH 374



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 81/155 (52%), Gaps = 13/155 (8%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ-NGLATHVLELYREMKSLGV 144
           N  +  +V+   ++  R +F+++  +  +TWN M+SGY +  G      EL+ ++     
Sbjct: 77  NKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPE--- 133

Query: 145 CPDAVTFVGVLSSCAHLGAHSV--GLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202
            PD+V++  ++  C +L ++ V   L    ++      S     N LI+ +A+ G ++KA
Sbjct: 134 -PDSVSY-NIMLVC-YLRSYGVKAALAFFNKMPVKDIAS----WNTLISGFAQNGQMQKA 186

Query: 203 RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
             +F  MP K  VSW+A+I GY  HG  E A +L+
Sbjct: 187 FDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELY 221



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 16/173 (9%)

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGY-GIHGHGEVAVQLFDEMLKSGI 245
           N  I  + R  +L+ AR +F+ M  +T V+W  ++ GY  + G  + A +LFD++ +   
Sbjct: 77  NKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPE--- 133

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
            PD  ++  +L     +      L +F  M  K         +  ++    + GQ+ +A 
Sbjct: 134 -PDSVSYNIMLVCYLRSYGVKAALAFFNKMPVK-----DIASWNTLISGFAQNGQMQKAF 187

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAE-----LAFGKVIKLEPMNTGY 353
           +L  S++ E +G  W A++     H ++E AE     +    V+    M TGY
Sbjct: 188 DLF-SVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGY 239


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/510 (41%), Positives = 304/510 (59%), Gaps = 6/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+ISGY       EA+ LF +M +  V  +  TM+ +L  C     + LG   H  
Sbjct: 164 VSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSW 223

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               G   +  + N L+ +Y KCG V+    LF+ +  K +++WN +I GY    L    
Sbjct: 224 IDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEA 283

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI--QANGFGSNPFLNNALI 190
           L L++EM   G  P+ VT V +L +CAHLGA  +G  +   I  +     + P L  +LI
Sbjct: 284 LLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLI 343

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MYA+CG+++ A  +F+ M  K++ SW A+I G+ +HG       LF  M K+GI PD  
Sbjct: 344 DMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDI 403

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            FV +LSACSH+G  D G   F  M   Y + P  EHY CM+DLLG +G   EA E+I++
Sbjct: 404 TFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKT 463

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M +EPDG +W +LL AC+ H N+ELAE     ++K+EP N G YVLLSNIY+ A   D +
Sbjct: 464 MPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEV 523

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
            +VR ++  + +KK PG S +E+   VH F+VGD+ H +  EIY ML+++E L++E    
Sbjct: 524 AKVRALLNGKGMKKVPGCSSIEIDSEVHEFIVGDKLHPRNREIYGMLEEMEALLEEAGFV 583

Query: 431 KRSDQ--KNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
             + +  +  EE   +  +  HSEKLAIAFG+I+T PGT++ ++KNLR+C +CH   KLV
Sbjct: 584 PDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLV 643

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SKI  R+ I RD TRFHHF+ G CSC D+W
Sbjct: 644 SKIYKREIIARDRTRFHHFRDGVCSCNDFW 673



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 119/378 (31%), Positives = 184/378 (48%), Gaps = 35/378 (9%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N ++ GY L+S    A+ L+  M   G+  NS T   LL  C        G   H   +
Sbjct: 34  WNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVL 93

Query: 75  KFGLDLDFSVGNCLMTMYVK-------------------------------CGSVDYGRK 103
           K G + D  V   L++MY +                                G++   ++
Sbjct: 94  KLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQE 153

Query: 104 LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163
           +FD++P K +++WNAMISGYA+ G     LEL++EM    V PD  T V VLS+CA   +
Sbjct: 154 MFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRS 213

Query: 164 HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGG 223
             +G +V   I  +GFGSN  + NALI++Y++CG ++ A  +F+G+  K VVSW  +IGG
Sbjct: 214 VELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGG 273

Query: 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQ 282
           Y      + A+ LF EML+SG  P+    VS+L AC+H G  D G   + Y  K    + 
Sbjct: 274 YTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVT 333

Query: 283 PGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGK 342
             P   T ++D+  + G +  A ++  SML     + W A++    +H         F +
Sbjct: 334 NAPSLRTSLIDMYAKCGDIEAAHQVFNSML-HKSLSSWNAMIFGFAMHGRANAGFDLFSR 392

Query: 343 VIK--LEPMNTGYYVLLS 358
           + K  +EP +  +  LLS
Sbjct: 393 MRKNGIEPDDITFVGLLS 410



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 124/257 (48%), Gaps = 33/257 (12%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           Y   +F  + E   + WN M+ GYA +      L+LY  M SLG+ P++ TF  +L SCA
Sbjct: 18  YAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCA 77

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR------------------------ 195
              A   G ++   +   G+  + +++ +LI+MYA+                        
Sbjct: 78  KSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTA 137

Query: 196 -------CGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
                   GN++ A+ +FD +P K VVSW A+I GY   G  + A++LF EM+K+ +RPD
Sbjct: 138 LITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPD 197

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
               V+VLSAC+ +   + G +  +   + +G     +    ++DL  + GQ+  A  L 
Sbjct: 198 EGTMVTVLSACAQSRSVELGRQ-VHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLF 256

Query: 309 ESMLVEPDGAVWGALLG 325
           E +  + D   W  L+G
Sbjct: 257 EGLSCK-DVVSWNTLIG 272


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/509 (39%), Positives = 307/509 (60%), Gaps = 5/509 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +N+L+SG      +   ++ F +MR E G + N VT+L ++  C   G L  G   H 
Sbjct: 206 VSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSLHG 265

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + VK G+     V N L+ MY K G +D   +LF+++P + L++WN+M+  +  NG A  
Sbjct: 266 VVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEK 325

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            ++L+  MK  G+ PD  T V +L +C   G       +   I   GF ++  +  AL+N
Sbjct: 326 GMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLN 385

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +YA+ G L  +  IF+ +  +  ++WTA++ GY +H  G  A++LFD M+K G+  D   
Sbjct: 386 LYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVT 445

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F  +LSACSH+GL ++G +YF  M   Y ++P  +HY+CMVDLLGR+G+L +A ELI+SM
Sbjct: 446 FTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSM 505

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            +EP   VWGALLGAC+++ NVEL +    +++ L+P +   Y++LSNIYS A       
Sbjct: 506 PMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRXAS 565

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
           +VR +M+ERRL ++PG S++E   ++H F+VGD+ H ++ EI+  L++L   + E     
Sbjct: 566 KVRXLMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIXEAGCAP 625

Query: 432 RSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           +++      + E  ++    HSEKLAIAFG++ T  G  +++ KNLRICGDCH   K  S
Sbjct: 626 KTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFAS 685

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +  R  I+RD+ RFHHF  G CSC+DYW
Sbjct: 686 LLEKRTIIIRDSKRFHHFADGLCSCRDYW 714



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 158/312 (50%), Gaps = 14/312 (4%)

Query: 25  NSLVSEAVSLFGKMREQGVEINSVTMLCLLPI--CVDPGYLWLGMCCHCICVKFGLDLDF 82
           +S  ++     GK+    +  +S+    +  I  C    Y      C  I  +    L++
Sbjct: 118 DSTRTKVAVFLGKLHNSSLLADSIVQSLVFAISSCTSVSY------CSAIHARVIKSLNY 171

Query: 83  S---VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM 139
           S   +G+ L++MY K G  +  ++LFD++P + L++WN+++SG +  G     L  +  M
Sbjct: 172 SDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRM 231

Query: 140 KS-LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGN 198
           ++  G  P+ VT + V+S+CA +GA   G  +   +   G      + N+LINMY + G 
Sbjct: 232 RTESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGF 291

Query: 199 LKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSA 258
           L  A  +F+ MP +++VSW +++  +  +G+ E  + LF+ M ++GI PD    V++L A
Sbjct: 292 LDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRA 351

Query: 259 CSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGA 318
           C+  GL  +  E  +   ++ G        T +++L  + G+LN + ++ E  + + D  
Sbjct: 352 CTDTGLGRQA-ESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEE-IKDRDTI 409

Query: 319 VWGALLGACKIH 330
            W A+L    +H
Sbjct: 410 AWTAMLAGYAVH 421



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 2/111 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T+ + A+++GY +++   EA+ LF  M ++GVE++ VT   LL  C   G +  G     
Sbjct: 408 TIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFE 467

Query: 72  ICVK-FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP-EKGLITWNAMI 120
           I  + + ++      +C++ +  + G ++   +L   +P E     W A++
Sbjct: 468 IMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALL 518


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/507 (39%), Positives = 315/507 (62%), Gaps = 6/507 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++ +++G+V      EA++++ +MRE GV  + V M+ ++  C+  G   +G   H  
Sbjct: 174 VAWSTMVAGFVTAGRPVEALAMYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGR 233

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++  + +D      L++MY K G +D   ++F  +P +  +TW+A+ISG+AQNG A   
Sbjct: 234 LLRHCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEA 293

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+L+RE+++ G+ P +   V  L +CA +G   +G  +   I          L  A+++M
Sbjct: 294 LDLFRELQADGLQPCSWALVSALLACASVGFLKLGKSIHGFILRR-LEWQCILGTAVLDM 352

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++CG+L+ AR +F+ +  + +V W AII   G HG G  A+ LF E+ ++GI+PD   F
Sbjct: 353 YSKCGSLESARKLFNKLSSRDLVLWNAIIACCGTHGCGHDALALFQELNETGIKPDHATF 412

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S+LSA SH+GL ++G  +F  M  ++G++P  +HY C+VDLL R+G + EA +++ SM 
Sbjct: 413 ASLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLLARSGLVEEANDMLASMQ 472

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            EP  A+W  LL  C  +K +EL E    K+++L P + G   L+SN+Y+ A+  D +  
Sbjct: 473 TEPTIAIWVILLSGCLNNKKLELGETIAKKILELRPEDIGVLALVSNLYAAAKKWDKVRE 532

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           +R +M++   KK PGYS +E+KG  H F++ D++H Q  EI +M+ KL + +++     R
Sbjct: 533 IRKLMKDSGSKKVPGYSLIEVKGTRHAFVMEDQSHPQHREILKMVAKLNSEMRKLGYVPR 592

Query: 433 SD---QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKI 489
           ++       E+ L     HSE+LAIAFG++NTSPGT +V++KNLR+CGDCH  IK +SKI
Sbjct: 593 TEFVYHDLDEDQL--LSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYISKI 650

Query: 490 VDRQFIVRDATRFHHFKSGFCSCKDYW 516
           VDR+ +VRDA RFHHFK G CSC DYW
Sbjct: 651 VDREIVVRDAKRFHHFKDGACSCGDYW 677



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 144/318 (45%), Gaps = 8/318 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N L+S +        A+ +F  +       NS T    L  C   G L           
Sbjct: 76  WNGLLSAHSRAGAPGAALRVFRAL-PSSARPNSTTFTLTLTACARLGDLDAAESVRVRAF 134

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             G   D  V + L+ +Y +CG+++   ++FD +P K  + W+ M++G+   G     L 
Sbjct: 135 AAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALA 194

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           +Y  M+  GV  D V  VGV+ +C   G   +G  V  ++  +    +     +L++MYA
Sbjct: 195 MYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYA 254

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           + G+L  A  +F  MP +  V+W+A+I G+  +G    A+ LF E+   G++P   A VS
Sbjct: 255 KNGHLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQADGLQPCSWALVS 314

Query: 255 VLSACSHAGLTD--KGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            L AC+  G     K +  F   + ++    G    T ++D+  + G L  A +L    L
Sbjct: 315 ALLACASVGFLKLGKSIHGFILRRLEWQCILG----TAVLDMYSKCGSLESARKLFNK-L 369

Query: 313 VEPDGAVWGALLGACKIH 330
              D  +W A++  C  H
Sbjct: 370 SSRDLVLWNAIIACCGTH 387


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/509 (39%), Positives = 307/509 (60%), Gaps = 26/509 (5%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + ++I+GY  +     A+ L  +M ++GV+++ V +  +L  C   G L  G   H  
Sbjct: 318 VSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDY 377

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
                ++ +  V N LM MY KCGS++    +F  +  K +I+WN MI            
Sbjct: 378 IKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIG----------- 426

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
                E+K     PD+ T   VL +CA L A   G E+   I  NG+ S+  + NAL+++
Sbjct: 427 -----ELK-----PDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDL 476

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CG L  AR +FD +P K +VSWT +I GYG+HG+G  A+  F+EM  +GI PD  +F
Sbjct: 477 YVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSF 536

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +S+L ACSH+GL ++G  +FY MKN + ++P  EHY CMVDLL R G L++A E IE++ 
Sbjct: 537 ISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLP 596

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           + PD  +WGALL  C+ + ++ELAE    +V +LEP N+GYYVLL+NIY+EA   + + R
Sbjct: 597 IAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKR 656

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHH-QTVEIYRMLDKLENLVQE--HDG 429
           +R  + ++ L+K+PG S++E+KG+V+LF+ G+ + H  +  I  +L K+   ++E  H  
Sbjct: 657 LREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFP 716

Query: 430 TKRSDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
             +    N++E   +  +  HSEKLA+AFG++   P   I V KNLR+CGDCH   K +S
Sbjct: 717 KTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMS 776

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K   R+ ++RD  RFHHFK G+CSC+ +W
Sbjct: 777 KETRREIVLRDPNRFHHFKDGYCSCRGFW 805



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 162/318 (50%), Gaps = 23/318 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N++ISGYV N L    + ++ +M   G++++  T++ +L  C + G L LG   H +
Sbjct: 217 ISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSL 276

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K   +   +  N L+ MY KCG +D   ++F+++ E+ +++W +MI+GY ++G +   
Sbjct: 277 AIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGA 336

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           ++L ++M+  GV  D V    +L +CA  G+   G +V   I+AN   SN F+ NAL++M
Sbjct: 337 IKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDM 396

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG+++ A ++F  M  K ++SW  +IG                      ++PD    
Sbjct: 397 YAKCGSMEAANSVFSTMVVKDIISWNTMIG---------------------ELKPDSRTM 435

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
             VL AC+     ++G E  +G   + G          +VDL  + G L  A  L+  M+
Sbjct: 436 ACVLPACASLSALERGKE-IHGYILRNGYSSDRHVANALVDLYVKCGVLGLA-RLLFDMI 493

Query: 313 VEPDGAVWGALLGACKIH 330
              D   W  ++    +H
Sbjct: 494 PSKDLVSWTVMIAGYGMH 511



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 157/319 (49%), Gaps = 28/319 (8%)

Query: 62  YLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCG----SVDYGRKLFDQVPEKGLITWN 117
           YLW  M       K G   DF    CL  + V+ G      +   +LFD++ ++ +I+WN
Sbjct: 166 YLWNFMVSEY--AKIG---DFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWN 220

Query: 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
           +MISGY  NGL    L +Y++M  LG+  D  T + VL  CA+ G  S+G  V      +
Sbjct: 221 SMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS 280

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
            F      +N L++MY++CG+L  A  +F+ M  + VVSWT++I GY   G  + A++L 
Sbjct: 281 SFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLL 340

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
            +M K G++ D  A  S+L AC+ +G  D G +    +K    ++        ++D+  +
Sbjct: 341 QQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN-NMESNLFVCNALMDMYAK 399

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLG---------ACKIHKNVELAELAFGKVIKLEP 348
            G +  A  +  +M+V+ D   W  ++G         AC +     L+ L  GK I    
Sbjct: 400 CGSMEAANSVFSTMVVK-DIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIH--- 455

Query: 349 MNTGYYVLLSNIYSEARNL 367
              GY  +L N YS  R++
Sbjct: 456 ---GY--ILRNGYSSDRHV 469



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 18/176 (10%)

Query: 116 WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175
           +NA I  + Q G   + +EL    K   +  +  T+  VL  CA L + + G +V   I+
Sbjct: 69  YNAKILHFCQLGDLENAMELICMCKKSEL--ETKTYSSVLQLCAGLKSFTDGKKVHSIIK 126

Query: 176 ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQ 235
           +N  G +  L   L++ YA CG+LK+ R +FD M +K V  W  ++  Y   G  + ++ 
Sbjct: 127 SNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESIC 186

Query: 236 LFDEMLKSGI---RP-------------DGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           LF  M++ GI   RP             D  ++ S++S     GLT++GL  +  M
Sbjct: 187 LFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQM 242


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/440 (43%), Positives = 275/440 (62%), Gaps = 10/440 (2%)

Query: 84  VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG 143
           V N L+ MY K G  DY   +F+++ +K +I+W ++++G   NG     L L+ EM+ +G
Sbjct: 4   VNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMG 63

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
           + PD +    VLS+CA L     G +V      +G GS+  ++N+L++MYA+CG ++ A 
Sbjct: 64  IHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDAN 123

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG 263
            +FD M  + V++WTA+I GY  +G G  ++  +++M+ SG++PD   F+ +L ACSHAG
Sbjct: 124 KVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAG 183

Query: 264 LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGAL 323
           L + G  YF  M+  YG++PGPEHY CM+DLLGR+G+L EA EL+  M V+PD  VW AL
Sbjct: 184 LVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKAL 243

Query: 324 LGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLK 383
           L AC++H NVEL E A   + +LEP N   YVLLSN+YS A   +   + R +M+ R + 
Sbjct: 244 LAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVS 303

Query: 384 KDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLN 443
           K+PG S++E+  +VH FM  DR+H +T EIY  +D++  L++E          N   H  
Sbjct: 304 KEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKE---AGYVPDMNFALHDM 360

Query: 444 DTE-------VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIV 496
           D E        HSEKLA+AFG++   PG  I + KNLRICGDCH  +K VS +  R  I+
Sbjct: 361 DEEGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVIL 420

Query: 497 RDATRFHHFKSGFCSCKDYW 516
           RD+  FHHF+ G CSC DYW
Sbjct: 421 RDSNCFHHFREGACSCSDYW 440



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 118/225 (52%), Gaps = 6/225 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            + + +L++G V N    EA+ LF +MR  G+  + + +  +L  C +   L  G   H 
Sbjct: 33  VISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHA 92

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K GL    SV N L++MY KCG ++   K+FD +  + +ITW A+I GYAQNG    
Sbjct: 93  NFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRE 152

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI-QANGFGSNPFLNNALI 190
            L  Y +M + GV PD +TF+G+L +C+H G    G    Q + +  G    P     +I
Sbjct: 153 SLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQSMEEVYGIKPGPEHYACMI 212

Query: 191 NMYARCGNLKKARAIFDGM---PRKTVVSWTAIIGGYGIHGHGEV 232
           ++  R G L +A+ + + M   P  TV  W A++    +HG+ E+
Sbjct: 213 DLLGRSGKLMEAKELLNQMAVQPDATV--WKALLAACRVHGNVEL 255


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/510 (40%), Positives = 298/510 (58%), Gaps = 46/510 (9%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            VC+NA+I GY+    V  A  LF  M ++ +                            
Sbjct: 204 AVCWNAMIDGYLRFGEVEAARELFEGMPDRSM---------------------------- 235

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                      S  N +++ + +CG V+  R+ FD++ E+  I+W+AMI GY Q G    
Sbjct: 236 ----------ISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFME 285

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            LE++ +M+   + P       VLS+CA+LGA   G  +    + N    +  L  +L++
Sbjct: 286 ALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVD 345

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+CG +  A  +F+ M  K V SW A+IGG  +HG  E A+ LF +M    I P+   
Sbjct: 346 MYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPNEIT 402

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           FV VL+AC+H GL  KGL  F  M+ +YG++P  EHY C+VDLLGRAG L EA +++ S+
Sbjct: 403 FVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSI 462

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
             EP  AVWGALLGAC+ H NVEL E     +++LEP N+G Y LLSNIY++A   + + 
Sbjct: 463 PTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVG 522

Query: 372 RVRMMMRERRLKKDPGYSYVEL-KGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ----E 426
            VR +M+ER +K  PG S ++L +G VH F++GD +H Q  +IY+MLDK++  +Q    E
Sbjct: 523 EVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYE 582

Query: 427 HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
            D ++     + EE       HSEKLAI FG+INTSPGT I ++KNLR+C DCH   KL+
Sbjct: 583 PDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLI 642

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           S++ +R+ IVRD  R+HHF++G CSCKD+W
Sbjct: 643 SQVYNREIIVRDRIRYHHFRNGACSCKDFW 672



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 139/344 (40%), Gaps = 71/344 (20%)

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDY-----GRKLFDQVPEKGLITWNAMISGY 123
            H + ++ G   D  +   L+  Y    +  Y       ++FD V +  +  WN MI   
Sbjct: 53  AHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVC 112

Query: 124 AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP 183
            +N      + LY EM      P+  T+  VL +C+  G  + G++V   +  +G G + 
Sbjct: 113 IENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDG 172

Query: 184 FLNNALINMYA--------------------------------RCGNLKKARAIFDGMPR 211
            + ++ I MYA                                R G ++ AR +F+GMP 
Sbjct: 173 HILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPD 232

Query: 212 KTVVS-WTAIIGGYGIHGHGEVAVQLFDE------------------------------- 239
           ++++S W A+I G+   G  EVA + FDE                               
Sbjct: 233 RSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQ 292

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M K  IRP      SVLSAC++ G  D+G  + +    +  +Q      T +VD+  + G
Sbjct: 293 MQKEKIRPRKFVLPSVLSACANLGALDQG-RWIHTYAKRNSIQLDGVLGTSLVDMYAKCG 351

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
           +++ A E+ E M    + + W A++G   +H   E A   F K+
Sbjct: 352 RIDLAWEVFEKM-SNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM 394


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/524 (38%), Positives = 320/524 (61%), Gaps = 13/524 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVS-EAVSLFGKMREQGVEINSVTMLCLLPICVD 59
           VFD      H  + + A+I+GYV +     EA+ LF +M +  V+ N  T   +L  C +
Sbjct: 205 VFDR--MPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACAN 262

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              +WLG   + + VK  L     VGN L++MY +CG+++  RK FD + EK L+++N +
Sbjct: 263 LSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTI 322

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           ++ YA++  +    EL+ E++  G   +A TF  +LS  + +GA   G ++  +I  +GF
Sbjct: 323 VNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGF 382

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            SN  + NALI+MY+RCGN++ A  +F+ M    V+SWT++I G+  HG    A++ F +
Sbjct: 383 KSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHK 442

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           ML++G+ P+   +++VLSACSH GL  +GL++F  MK ++G+ P  EHY C+VDLLGR+G
Sbjct: 443 MLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSG 502

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
            L EA+EL+ SM  + D  V    LGAC++H N++L + A   +++ +P +   Y+LLSN
Sbjct: 503 HLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSN 562

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
           +++ A   + +  +R  M+ER L K+ G S++E++ +VH F VGD +H Q  EIY  LD+
Sbjct: 563 LHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQEIYDELDQ 622

Query: 420 LENLVQEHDGTKRSD-------QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKN 472
           L   ++E      +D       ++  E++L     HSEK+A+A+G I+TS    I V KN
Sbjct: 623 LALKIKELGYIPSTDFVLHDVEEEQKEQYLFQ---HSEKIAVAYGFISTSTSRPIRVFKN 679

Query: 473 LRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           LR+CGDCH   K  S +  ++ ++RDA RFHHFK G CSC DYW
Sbjct: 680 LRVCGDCHTAFKYFSIVRRKEIVLRDANRFHHFKDGTCSCNDYW 723



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 105/338 (31%), Positives = 170/338 (50%), Gaps = 10/338 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++ALIS Y  N    EA+S F  M E G   N      +   C +   + LG      
Sbjct: 8   VSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIFGF 67

Query: 73  CVKFG-LDLDFSVGNCLMTMYVK-CGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
            +K G  + D  VG  L+ M+VK  G ++   K+FD++P++ ++TW  MI+ + Q G + 
Sbjct: 68  LLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSR 127

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             ++L+ +M   G  PD  T  GV+S+CA +G  S+G +    +  +G   +  +  +L+
Sbjct: 128 DAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLV 187

Query: 191 NMYARC---GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGH-GEVAVQLFDEMLKSGIR 246
           +MYA+C   G++  AR +FD MP   V+SWTAII GY   G     A++LF EM++  ++
Sbjct: 188 DMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVK 247

Query: 247 PDGTAFVSVLSACSHAGLTDKGL-EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
           P+   F SVL AC  A L+D  L E  Y +  K  L         ++ +  R G +  A 
Sbjct: 248 PNHFTFSSVLKAC--ANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENAR 305

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
           +  + +L E +   +  ++ A     N E A   F ++
Sbjct: 306 KAFD-VLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEI 342



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 146/315 (46%), Gaps = 44/315 (13%)

Query: 110 EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLE 169
           ++ L++W+A+IS YA N  A   +  + +M   G  P+   F GV  +C++    S+G  
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 170 VEQQIQANG-FGSNPFLNNALINMYAR-CGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH 227
           +   +   G F S+  +  ALI+M+ +  G+L+ A  +FD MP + VV+WT +I  +   
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG--- 284
           G    AV LF +M+ SG  PD      V+SAC+  GL   G + F+ +  K GL      
Sbjct: 124 GFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQ-FHCLVMKSGLDLDVCV 182

Query: 285 ---------------------------PEH----YTCMVDLLGRAGQLN-EALELIESML 312
                                      P H    +T ++    ++G  + EA+EL   M+
Sbjct: 183 GCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMV 242

Query: 313 ---VEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNL 367
              V+P+   + ++L AC    ++ L E  +  V+K  L  +N     L+S +YS   N+
Sbjct: 243 QGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLIS-MYSRCGNM 301

Query: 368 DGIMRVRMMMRERRL 382
           +   +   ++ E+ L
Sbjct: 302 ENARKAFDVLFEKNL 316


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/509 (39%), Positives = 307/509 (60%), Gaps = 5/509 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + YN LI+    N  V E++ LF +++    +        LL I  +   L +G   H  
Sbjct: 307 ISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQ 366

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +      +  VGN L+ MY KC       ++F  +  +  + W A+ISGY Q GL    
Sbjct: 367 AIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDG 426

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+L+ EM    +  D+ T+  +L +CA+L + ++G ++  +I  +G  SN F  +AL++M
Sbjct: 427 LKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDM 486

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG++K+A  +F  MP +  VSW A+I  Y  +G G  A++ F++M+ SG++P+  +F
Sbjct: 487 YAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSF 546

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +S+L ACSH GL ++GL+YF  M   Y L+P  EHY  MVD+L R+G+ +EA +L+  M 
Sbjct: 547 LSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMP 606

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPM-NTGYYVLLSNIYSEARNLDGIM 371
            EPD  +W ++L +C+IHKN ELA  A  ++  ++ + +   YV +SNIY+ A   D + 
Sbjct: 607 FEPDEIMWSSILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVG 666

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH---- 427
           +V+  +RER ++K P YS+VE+K + H+F   D +H QT EI R LD+LE  ++E     
Sbjct: 667 KVKKALRERGIRKVPAYSWVEIKQKTHVFSANDTSHPQTKEITRKLDELEKQMEEQGYKP 726

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           D T      + E  +   + HSE++AIAF +I+T  G+ I+VMKNLR C DCH  IK++S
Sbjct: 727 DSTCALHNVDEEVKVESLKYHSERIAIAFALISTPKGSPILVMKNLRACNDCHAAIKVIS 786

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KIV+R+  VRD++RFHHF  G CSCKDYW
Sbjct: 787 KIVNREITVRDSSRFHHFTDGSCSCKDYW 815



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 131/258 (50%), Gaps = 4/258 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V + ALISGYV   L  + + LF +M    +  +S T   +L  C +   L LG   H 
Sbjct: 407 SVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHS 466

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             ++ G   +   G+ L+ MY KCGS+    ++F ++P +  ++WNA+IS YAQNG   H
Sbjct: 467 RIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGH 526

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLE-VEQQIQANGFGSNPFLNNALI 190
            L  + +M   G+ P++V+F+ +L +C+H G    GL+      Q            +++
Sbjct: 527 ALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMV 586

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK-SGIRPD 248
           +M  R G   +A  +   MP     + W++I+    IH + E+A++  D++    G+R D
Sbjct: 587 DMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQLFNMKGLR-D 645

Query: 249 GTAFVSVLSACSHAGLTD 266
              +VS+ +  + AG  D
Sbjct: 646 AAPYVSMSNIYAAAGEWD 663



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 171/401 (42%), Gaps = 43/401 (10%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD  ++ +   V +  LI GY  ++   EA +LF  M   G+  + +T+  LL    + 
Sbjct: 95  LFDSMVQRS--VVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEF 152

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             +      H   VK G D    V N L+  Y K  S+     LF  + EK  +T+NA++
Sbjct: 153 ESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALL 212

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GY++ G     + L+ +M+ LG  P   TF  VL++   +     G +V   +    F 
Sbjct: 213 TGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFV 272

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            N F+ NAL++ Y++   + +AR +F  MP    +S+  +I     +G  E +++LF E+
Sbjct: 273 WNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFREL 332

Query: 241 LKSGIRPDGTAFVSVLSAC-------------SHAGLTD--------KGLEYFYGMKNKY 279
             +        F ++LS               S A +TD          L   Y   +K+
Sbjct: 333 QFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKF 392

Query: 280 G---------LQPGPEHYTCMVDLLGRAGQLNEALELIESM---LVEPDGAVWGALLGAC 327
           G                +T ++    + G   + L+L   M    +  D A + ++L AC
Sbjct: 393 GEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRAC 452

Query: 328 KIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
                  LA L  GK +    + +G    LSN++S +  +D
Sbjct: 453 -----ANLASLTLGKQLHSRIIRSG---CLSNVFSGSALVD 485



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 123/265 (46%), Gaps = 13/265 (4%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N ++  Y+K G++   R LFD + ++ ++TW  +I GYAQ+        L+ +M   G+ 
Sbjct: 77  NTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMV 136

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           PD +T   +LS      + +   +V   +   G+ S   + N+L++ Y +  +L  A  +
Sbjct: 137 PDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHL 196

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           F  M  K  V++ A++ GY   G    A+ LF +M   G RP    F +VL+    AG+ 
Sbjct: 197 FKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLT----AGIQ 252

Query: 266 DKGLEY---FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGA 322
              +E+    +    K            ++D   +  ++ EA +L   M  E DG  +  
Sbjct: 253 MDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEM-PEVDGISYNV 311

Query: 323 LLGAC----KIHKNVEL-AELAFGK 342
           L+  C    ++ +++EL  EL F +
Sbjct: 312 LITCCAWNGRVEESLELFRELQFTR 336



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 2/143 (1%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           N    N +I  Y + GNL  AR++FD M +++VV+WT +IGGY  H     A  LF +M 
Sbjct: 72  NVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMC 131

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301
           + G+ PD     ++LS  +     ++ +   +G   K G          ++D   +   L
Sbjct: 132 RHGMVPDHITLATLLSGFTEFESVNE-VAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSL 190

Query: 302 NEALELIESMLVEPDGAVWGALL 324
             A  L + M  E D   + ALL
Sbjct: 191 GLACHLFKHM-AEKDNVTFNALL 212


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/509 (42%), Positives = 312/509 (61%), Gaps = 9/509 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCH--CI 72
           +N LI  Y  +     A+ L+  M + GVE ++ T    L  C     L  G   H   +
Sbjct: 131 WNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGREVHERVL 190

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
              +G D+    G  L+ MY KCG VD  R +FD++  +  + WN+MI+ Y QNG     
Sbjct: 191 GTHWGEDMFVCAG--LVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGRPMEA 248

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L R+M + GV P   T V  +S+ A   A   G E+       GF     L  +L++M
Sbjct: 249 LSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDKLKTSLVDM 308

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM-LKSGIRPDGTA 251
           YA+ G ++ AR +F+ + ++ +VSW A+I GYG+HGH + A++LF++M +++ + PD   
Sbjct: 309 YAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTPDNIT 368

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           FV VLSAC+H G+  +  E+F  M + Y ++P  +H+TC+VD+LG AG+  EA +LI+ M
Sbjct: 369 FVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDLIKGM 428

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            ++PD  +WGALL  CKIHKNVEL ELA  K+I+LEP + G YVLLSNIY+++   +   
Sbjct: 429 PMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVLLSNIYAQSGKWEKAA 488

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH---- 427
           RVR +M  R LKK  G S++ELKG+ H F+VGD +H ++ EIY  L++LE L+ +     
Sbjct: 489 RVRKLMTNRGLKKIIGCSWIELKGKTHGFLVGDASHPRSAEIYEELERLEGLMSDAGYMP 548

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           D          +E  N    HSE+LAIAFG+I+T  GT+++V KNLR+C DCH+ IKL+S
Sbjct: 549 DTMPVFHDVGDDEKRNMMRSHSERLAIAFGLISTPSGTKLLVTKNLRVCEDCHVVIKLIS 608

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +IV R+ I+RD  R+HHF +G CSCKDYW
Sbjct: 609 QIVQREIIIRDVNRYHHFVNGECSCKDYW 637



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 161/327 (49%), Gaps = 10/327 (3%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           +L  CV    L  G   H   +  GL  D  +   L+ +Y  CG V + R+LFD +P++ 
Sbjct: 68  VLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARRLFDGMPKRN 127

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
           +  WN +I  YA++G     ++LYR M   GV PD  T+   L +CA L     G EV +
Sbjct: 128 VFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGREVHE 187

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
           ++    +G + F+   L++MYA+CG +  ARA+FD +  +  V W ++I  YG +G    
Sbjct: 188 RVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGRPME 247

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
           A+ L  +M  +G+ P     VS +SA + A    +G E  +G   + G     +  T +V
Sbjct: 248 ALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRE-LHGFGWRRGFDRQDKLKTSLV 306

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV---IKLEPM 349
           D+  ++G +  A  L E  L++ +   W A++    +H + + A   F K+    ++ P 
Sbjct: 307 DMYAKSGWVQVARVLFEQ-LMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTPD 365

Query: 350 NTGYYVLLS-----NIYSEARNLDGIM 371
           N  +  +LS      +  EA+   G+M
Sbjct: 366 NITFVGVLSACNHGGMVKEAKEFFGLM 392



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 6/178 (3%)

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
           +  VL SC    +   G ++  ++  +G G +  L   L+++YA CG +  AR +FDGMP
Sbjct: 65  YTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARRLFDGMP 124

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270
           ++ V  W  +I  Y   G  EVA+QL+  M+  G+ PD   +   L AC+     + G E
Sbjct: 125 KRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGRE 184

Query: 271 YFYGMKNKYGLQPGPEHYTC--MVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
                +   G   G + + C  +VD+  + G +++A  + + + V  D  VW +++ A
Sbjct: 185 VH---ERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVR-DSVVWNSMIAA 238


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/509 (39%), Positives = 311/509 (61%), Gaps = 9/509 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +N+LISG+  +  +  +++ F  M+ E  V+ N VT+L ++  C   G L  G   H 
Sbjct: 106 VSWNSLISGF--SRCLHMSLTAFYTMKFEMSVKPNEVTILSMISAC--NGALDAGKYIHG 161

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K G  L+  V N L+ MY K G +    +LF+ +P+   ++WN++I+    NG A  
Sbjct: 162 FGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCARE 221

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            ++ + +M+ LG+  D  T + +L +C HLG   +   +   +   GFG+   +  AL++
Sbjct: 222 GIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLD 281

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
            YA+ G L  +  +F  +     V+WTA++ GY  HG G  A++LF+ M   G+ PD   
Sbjct: 282 TYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVT 341

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F  +LSACSH+GL ++G  YF  M   YG++P  +HY+CMVDLLGR G LN+A E+I++M
Sbjct: 342 FTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNM 401

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            +EP+  VWGALLGAC++H N+EL +     +I +EP++   Y++LSN+YS +R+     
Sbjct: 402 PMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAA 461

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
           +VR +++ER LK+ PGYS +E   + H F VGDR+H +T +IY  L++L   +++   + 
Sbjct: 462 KVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSS 521

Query: 432 RSDQ--KNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           +++   ++ EE + +  +  HSEKLAIAFG++ +  G  +++ KNLRICGDCH   KL+S
Sbjct: 522 KTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLIS 581

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            I  R  I+RD  RFHHF  GFCSC DYW
Sbjct: 582 LIEKRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 148/312 (47%), Gaps = 27/312 (8%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           TV +N++I+  V N    E +  F KMR  G+E +  T+L LL  C+  G   L    H 
Sbjct: 203 TVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHG 262

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           +    G     ++   L+  Y K G +     +F +V     + W AM++GYA +GL   
Sbjct: 263 LMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGRE 322

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN--NAL 189
            ++L+  M + G+ PD VTF  +LS+C+H G  + G +    + +  +G  P ++  + +
Sbjct: 323 AIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEG-KSYFNVMSEVYGIEPRVDHYSCM 381

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFDEMLK-SGIRP 247
           +++  RCG L  A  +   MP +     W A++G   +HG+ E+  ++ + ++    + P
Sbjct: 382 VDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDP 441

Query: 248 DGTAFVSVLSACS---------HAGLTDKGLEYF-------YGMKNKY---GLQPGPEH- 287
                +S + + S          A L ++GL+         YG KN +   G +  PE  
Sbjct: 442 RNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETE 501

Query: 288 --YTCMVDLLGR 297
             Y+ + +LLG+
Sbjct: 502 KIYSKLEELLGK 513



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 133/297 (44%), Gaps = 48/297 (16%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H    K  L  D  +G+ L+T Y K G  +   KLFD +P K L++WN++ISG+++  L 
Sbjct: 62  HARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSR-CLH 120

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSC-----AHLGAHSVGLEVEQQIQANGFGSNPF 184
             +   Y     + V P+ VT + ++S+C     A    H  G++V   ++         
Sbjct: 121 MSLTAFYTMKFEMSVKPNEVTILSMISACNGALDAGKYIHGFGIKVGGTLEVK------- 173

Query: 185 LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
           + N+LINMY + G+L  A  +F+ +P    VSW +II     +G     +  F++M + G
Sbjct: 174 VANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLG 233

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN-- 302
           I  D    +++L AC H G+  K  E  +G+    G        T ++D   + G+L+  
Sbjct: 234 IEQDEGTILALLQACLHLGV-GKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSAS 292

Query: 303 -----------------------------EALELIESML---VEPDGAVWGALLGAC 327
                                        EA++L ESM    +EPD   +  LL AC
Sbjct: 293 YGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSAC 349


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/512 (39%), Positives = 309/512 (60%), Gaps = 9/512 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           TV +N++ISGY+ +  + EA+ LF  M     + + +T L L+ +      L  G   H 
Sbjct: 373 TVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHS 432

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K G+ +D SV N L+ MY KCG V    K+F  +     +TWN +IS   + G    
Sbjct: 433 NGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFAT 492

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L++  +M+   V PD  TF+  L  CA L A  +G E+   +   G+ S   + NALI 
Sbjct: 493 GLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIE 552

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY++CG L+ +  +F+ M R+ VV+WT +I  YG++G GE A++ F +M KSGI PD   
Sbjct: 553 MYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVV 612

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F++++ ACSH+GL D+GL  F  MK  Y + P  EHY C+VDLL R+ ++++A E I++M
Sbjct: 613 FIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAM 672

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            ++PD ++W ++L AC+   ++E AE    ++I+L P + GY +L SN Y+  R  D + 
Sbjct: 673 PIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVS 732

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
            +R  ++++ + K+PGYS++E+   VH+F  GD +  Q+  IY+ L+ L +L+ +     
Sbjct: 733 LIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIP 792

Query: 432 RSDQKNSEEHLNDTEV-------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
             D +   ++L + E        HSE+LAIAFG++NT PGT + VMKNLR+CGDCH   K
Sbjct: 793 --DPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTK 850

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           L+SKIV R+ +VRDA RFH FK G CSCKD W
Sbjct: 851 LISKIVGREILVRDANRFHLFKDGTCSCKDRW 882



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 154/318 (48%), Gaps = 17/318 (5%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N++I  +  N L  EA+  +GK+RE  V  +  T   ++  C       +G   +   +
Sbjct: 74  WNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQIL 133

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             G + D  VGN L+ MY + G +   R++FD++P + L++WN++ISGY+ +G     LE
Sbjct: 134 DMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALE 193

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG------SNPFLNNA 188
           +Y E+K+  + PD+ T   VL +  +L      L V+Q    +GF       S   +NN 
Sbjct: 194 IYHELKNSWIVPDSFTVSSVLPAFGNL------LVVKQGQGLHGFALKSGVNSVVVVNNG 247

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           L+ MY +      AR +FD M  +  VS+  +I GY      E +V++F E L    +PD
Sbjct: 248 LVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQ-FKPD 306

Query: 249 GTAFVSVLSACSHAGLTDKGL-EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
                SVL AC H  L D  L +Y Y    K G          ++D+  + G +  A ++
Sbjct: 307 LLTVSSVLRACGH--LRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDV 364

Query: 308 IESMLVEPDGAVWGALLG 325
             SM  + D   W +++ 
Sbjct: 365 FNSMECK-DTVSWNSIIS 381



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 107/191 (56%), Gaps = 3/191 (1%)

Query: 70  HCICVKFGLDL-DFSVGNCLMTMYVKCGSVDYGRKLFDQV-PEKGLITWNAMISGYAQNG 127
           H + +  GLD  DF  G  L+  Y           +F +V P K +  WN++I  +++NG
Sbjct: 27  HALVISLGLDSSDFFSGK-LIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFSKNG 85

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
           L    LE Y +++   V PD  TF  V+ +CA L    +G  V +QI   GF S+ F+ N
Sbjct: 86  LFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGN 145

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           AL++MY+R G L +AR +FD MP + +VSW ++I GY  HG+ E A++++ E+  S I P
Sbjct: 146 ALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVP 205

Query: 248 DGTAFVSVLSA 258
           D     SVL A
Sbjct: 206 DSFTVSSVLPA 216



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 161/330 (48%), Gaps = 11/330 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE        V +N+LISGY  +    EA+ ++ +++   +  +S T+  +LP   + 
Sbjct: 163 VFDE--MPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNL 220

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             +  G   H   +K G++    V N L+ MY+K       R++FD++  +  +++N MI
Sbjct: 221 LVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMI 280

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GY +  +    + ++ E       PD +T   VL +C HL   S+   +   +   GF 
Sbjct: 281 CGYLKLEMVEESVRMFLENLD-QFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFV 339

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
               + N LI++YA+CG++  AR +F+ M  K  VSW +II GY   G    A++LF  M
Sbjct: 340 LESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMM 399

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN---KYGLQPGPEHYTCMVDLLGR 297
           +    + D   ++ ++S  +   L D  L++  G+ +   K G+         ++D+  +
Sbjct: 400 MIMEEQADHITYLMLISVSTR--LAD--LKFGKGLHSNGIKSGICIDLSVSNALIDMYAK 455

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGAC 327
            G++ ++L++  SM    D   W  ++ AC
Sbjct: 456 CGEVGDSLKIFSSMGT-GDTVTWNTVISAC 484


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/508 (39%), Positives = 304/508 (59%), Gaps = 4/508 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N +I G+V +  + EA   F +M E+GV  +  T   +L  C  PG L  G   H  
Sbjct: 297 IAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHAR 356

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K GL  D   GN L+ MY K GS+   R++FD++P++ +++W  ++  YA        
Sbjct: 357 AAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVES 416

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
              +++M   GV  + +T++ VL +C++  A   G E+  ++   G  ++  + NAL++M
Sbjct: 417 FTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSM 476

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CG+++ A  +F+GM  + VV+W  +IGG G +G G  A+Q ++ M   G+RP+   F
Sbjct: 477 YFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATF 536

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           V+VLSAC    L ++G   F  M   YG+ P  +HY CMVD+L RAG L EA ++I ++ 
Sbjct: 537 VNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIP 596

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           ++P  A+WGALL AC+IH NVE+ E A    +KLEP N G YV LS IY+ A     + +
Sbjct: 597 LKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAK 656

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE--HDGT 430
           +R  M+ER +KK+PG S++E+ G VH F+  D++H +T EIY  L+ L+  ++   +   
Sbjct: 657 LRKFMKERGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYAELETLKKQMKSLGYVPD 716

Query: 431 KRSDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
            R    + ++   +  V  HSEKLAIA+G+I+T PGT I + KNLR+C DCH   K +SK
Sbjct: 717 TRFVMHDLDDEGKERAVCHHSEKLAIAYGLISTPPGTPIRISKNLRVCTDCHTATKFISK 776

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           I  R+ I RDA RFHHFK+G CSC DYW
Sbjct: 777 ITKREIIARDAHRFHHFKNGECSCGDYW 804



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 163/318 (51%), Gaps = 2/318 (0%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           S    V +N +ISGY    L  EA +LF  M+++ +E +  T + +L  C  P  L  G 
Sbjct: 90  SNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGR 149

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
             H   ++ GL  D +VGN L++MY KCGSV   R++FD +  +  ++W  +   YA++G
Sbjct: 150 EIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESG 209

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
                L+ Y  M    V P  +T++ VLS+C  L A   G ++   I  + + S+  ++ 
Sbjct: 210 YGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVST 269

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           AL  MY +CG  K AR +F+ +  + V++W  +I G+   G  E A   F  ML+ G+ P
Sbjct: 270 ALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAP 329

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           D   + +VLSAC+  G   +G E  +    K GL         ++++  +AG + +A ++
Sbjct: 330 DRATYTTVLSACARPGGLARGKE-IHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQV 388

Query: 308 IESMLVEPDGAVWGALLG 325
            + M  + D   W  LLG
Sbjct: 389 FDRM-PKRDVVSWTTLLG 405



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 120/398 (30%), Positives = 188/398 (47%), Gaps = 49/398 (12%)

Query: 38  MREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS 97
           +  +G +++S   + LL  CV    L +G   H   ++ G+  +  + N L+ +Y  CGS
Sbjct: 19  LHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGS 78

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
           V+  R+LFD+   K +++WN MISGYA  GLA     L+  M+   + PD  TFV +LS+
Sbjct: 79  VNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSA 138

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
           C+     + G E+  ++   G  ++  + NALI+MYA+CG+++ AR +FD M  +  VSW
Sbjct: 139 CSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSW 198

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL-------- 269
           T + G Y   G+GE +++ +  ML+  +RP    +++VLSAC      +KG         
Sbjct: 199 TTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVE 258

Query: 270 -EYFYGMKNKYGL----------QPGPEHYTC-----------MVDLLGRAGQLNEALEL 307
            EY   ++    L          +   E + C           M+     +GQL EA   
Sbjct: 259 SEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGT 318

Query: 308 IESML---VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTG------YYVLLS 358
              ML   V PD A +  +L AC          LA GK I       G      +   L 
Sbjct: 319 FHRMLEEGVAPDRATYTTVLSAC-----ARPGGLARGKEIHARAAKDGLVSDVRFGNALI 373

Query: 359 NIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGR 396
           N+YS+A    G M+    + +R  K+D   S+  L GR
Sbjct: 374 NMYSKA----GSMKDARQVFDRMPKRDV-VSWTTLLGR 406



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 149/313 (47%), Gaps = 2/313 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  L   Y  +    E++  +  M ++ V  + +T + +L  C     L  G   H  
Sbjct: 196 VSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAH 255

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            V+     D  V   L  MY+KCG+    R++F+ +  + +I WN MI G+  +G     
Sbjct: 256 IVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEA 315

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
              +  M   GV PD  T+  VLS+CA  G  + G E+  +   +G  S+    NALINM
Sbjct: 316 HGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINM 375

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++ G++K AR +FD MP++ VVSWT ++G Y        +   F +ML+ G++ +   +
Sbjct: 376 YSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITY 435

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + VL ACS+      G E  +    K GL         ++ +  + G + +A+ + E M 
Sbjct: 436 MCVLKACSNPVALKWGKE-IHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMS 494

Query: 313 VEPDGAVWGALLG 325
           +  D   W  L+G
Sbjct: 495 MR-DVVTWNTLIG 506


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/528 (40%), Positives = 309/528 (58%), Gaps = 30/528 (5%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +F+ES      T  + A++  YV + ++ EA  +F +M  Q  E++   M+         
Sbjct: 241 LFEESPVRDVFT--WTAMVYAYVQDGMLDEARRVFDEM-PQKREMSYNVMIA-------- 289

Query: 61  GYLWLGMCCHCICVKFGLDL-------DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL 113
           GY           +  G +L       +    N +++ Y + G +   R LFD +P++  
Sbjct: 290 GYAQYKR------MDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDS 343

Query: 114 ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQ 173
           ++W A+I+GYAQNGL    + +  EMK  G   +  TF   LS+CA + A  +G +V  Q
Sbjct: 344 VSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQ 403

Query: 174 IQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVA 233
           +   G+     + NAL+ MY +CG + +A  +F G+  K +VSW  ++ GY  HG G  A
Sbjct: 404 VVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQA 463

Query: 234 VQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293
           + +F+ M+ +G++PD    V VLSACSH GLTD+G EYF+ M   YG+ P  +HY CM+D
Sbjct: 464 LTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMID 523

Query: 294 LLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGY 353
           LLGRAG L EA  LI +M  EPD A WGALLGA +IH N+EL E A   V K+EP N+G 
Sbjct: 524 LLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGM 583

Query: 354 YVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEI 413
           YVLLSN+Y+ +     + ++R+ MR+  ++K PGYS+VE++ ++H F VGD  H +   I
Sbjct: 584 YVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQNKIHTFTVGDCFHPEKGRI 643

Query: 414 YRMLDKLENLVQEHDGTKRSDQ-----KNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIV 468
           Y  L++L+ L  +H+G   S +        EE  +  + HSEKLA+AFGI+    G  I 
Sbjct: 644 YAFLEELD-LKMKHEGYVSSTKLVLHDVEEEEKKHMLKYHSEKLAVAFGILTMPSGKPIR 702

Query: 469 VMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           VMKNLR+C DCH  IK +SKIV R  IVRD+ R+HHF  G CSC+DYW
Sbjct: 703 VMKNLRVCEDCHNAIKHISKIVGRLIIVRDSHRYHHFSEGICSCRDYW 750



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 157/345 (45%), Gaps = 41/345 (11%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA++SGYV +  V EA  +F +M  +    NS++   LL   V  G L         
Sbjct: 127 VSWNAMLSGYVRSGHVDEARDVFDRMPHK----NSISWNGLLAAYVRSGRLEEAR----R 178

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             +   D +    NCLM  YVK   +   R+LFDQ+P + LI+WN MISGYAQ+G  +  
Sbjct: 179 LFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQA 238

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLG----AHSVGLEVEQQIQANG---------- 178
             L+ E        D  T+  ++ +    G    A  V  E+ Q+ + +           
Sbjct: 239 RRLFEE----SPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQY 294

Query: 179 ---------FGSNPFLN----NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYG 225
                    F   PF N    N +I+ Y + G+L +AR +FD MP++  VSW AII GY 
Sbjct: 295 KRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYA 354

Query: 226 IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
            +G  E A+ +  EM + G   + + F   LSAC+     + G +  +G   + G + G 
Sbjct: 355 QNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQ-VHGQVVRTGYEKGC 413

Query: 286 EHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
                +V +  + G ++EA ++ +  +   D   W  +L     H
Sbjct: 414 LVGNALVGMYCKCGCIDEAYDVFQG-VQHKDIVSWNTMLAGYARH 457



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 141/327 (43%), Gaps = 61/327 (18%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V YNA+ISGY+ N+  S A  LF KM  +                              
Sbjct: 64  SVSYNAMISGYLRNAKFSLARDLFDKMPHK------------------------------ 93

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                    D    N ++T Y +   +   R LFD +PEK +++WNAM+SGY ++G    
Sbjct: 94  ---------DLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDE 144

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
             +++  M       +++++ G+L++    G     LE  +++  +         N L+ 
Sbjct: 145 ARDVFDRMPH----KNSISWNGLLAAYVRSGR----LEEARRLFESKSDWELISCNCLMG 196

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
            Y +   L  AR +FD +P + ++SW  +I GY   G    A +LF+E   S +R D   
Sbjct: 197 GYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEE---SPVR-DVFT 252

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           + +++ A    G+ D+    F  M  K  +      Y  M+    +  +++   EL E M
Sbjct: 253 WTAMVYAYVQDGMLDEARRVFDEMPQKREMS-----YNVMIAGYAQYKRMDMGRELFEEM 307

Query: 312 LVEPDGAVWGALL-GACKIHKNVELAE 337
              P+   W  ++ G C   +N +LA+
Sbjct: 308 PF-PNIGSWNIMISGYC---QNGDLAQ 330


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/512 (39%), Positives = 311/512 (60%), Gaps = 9/512 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           TV +N++ISGY+ +  + EA+ LF  M     + + +T L L+ +      L  G   H 
Sbjct: 373 TVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHS 432

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K G+ +D SV N L+ MY KCG V    K+F+ +     +TWN +IS   + G    
Sbjct: 433 NGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFAT 492

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L++  +M+   V PD  TF+  L  CA L A  +G E+   +   G+ S   + NALI 
Sbjct: 493 GLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIE 552

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY++CG L+ +  +F+ M R+ VV+WT +I  YG++G GE A++ F +M KSGI PD   
Sbjct: 553 MYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKALESFVDMEKSGIVPDSVV 612

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F++++ ACSH+GL +KGL  F  MK  Y + P  EHY C+VDLL R+ ++++A E I++M
Sbjct: 613 FIALIYACSHSGLVEKGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAM 672

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            +EPD ++W ++L AC+   ++E AE    ++I+L P + GY +L SN Y+  R  D + 
Sbjct: 673 PIEPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVS 732

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
            +R  +R++ +KK+PGYS++E+  +VH+F  GD +  Q+  I++ L+ L +L+ +     
Sbjct: 733 LIRKSVRDKHIKKNPGYSWIEIGKKVHVFCSGDDSAPQSEAIHKSLEILYSLMAKEGYI- 791

Query: 432 RSDQKNSEEHLNDTEV-------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
             D +   ++L + E        HSE+LAIAFG++NT PGT + VMKNLR+C DCH   K
Sbjct: 792 -PDSREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCSDCHEVTK 850

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           L+SKIV R+ +VRDA RFH FK G CSCKD W
Sbjct: 851 LISKIVGREILVRDANRFHLFKDGICSCKDRW 882



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 172/375 (45%), Gaps = 35/375 (9%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N++I  +  N    +A+  +GK+RE  V  +  T   ++  C       +G   +   +
Sbjct: 74  WNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQIL 133

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           + G + D  VGN L+ MY + G +   R++FD++P + L++WN++ISGY+ +G     LE
Sbjct: 134 EMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALE 193

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           +Y E+++  + PD+ T   VL + A+L     G  +      +G  S   +NN L+ MY 
Sbjct: 194 IYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYL 253

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +      AR +FD M  +  V++  +I GY      E +V++F E L    +PD     S
Sbjct: 254 KFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLENLDQ-FKPDILTVTS 312

Query: 255 VLSACSHAGLTDKGL-EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           VL AC H  L D  L +Y Y    + G          ++D+  + G +  A ++  SM  
Sbjct: 313 VLCACGH--LRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMEC 370

Query: 314 EPDGAVW----------GALLGACKIHK--------------------NVELAELAFGKV 343
           + D   W          G L+ A K+ K                    +  LA+L FGK 
Sbjct: 371 K-DTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKG 429

Query: 344 IKLEPMNTGYYVLLS 358
           +    + +G Y+ LS
Sbjct: 430 LHSNGIKSGIYIDLS 444



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/201 (35%), Positives = 112/201 (55%), Gaps = 3/201 (1%)

Query: 70  HCICVKFGLD-LDFSVGNCLMTMYVKCGSVDYGRKLFDQV-PEKGLITWNAMISGYAQNG 127
           H + +  GLD  DF  G  L+  Y    +      +F +V P K +  WN++I  +++NG
Sbjct: 27  HALVISLGLDGSDFFSGK-LIDKYSHFRAPASSLSVFRRVSPAKNVYIWNSIIRAFSKNG 85

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
                LE Y +++   V PD  TF  V+ +CA L    +G  V +QI   GF S+ ++ N
Sbjct: 86  WFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQILEMGFESDLYVGN 145

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           AL++MY+R G L +AR +FD MP + +VSW ++I GY  HG+ E A++++ E+  S I P
Sbjct: 146 ALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELRNSWIVP 205

Query: 248 DGTAFVSVLSACSHAGLTDKG 268
           D     SVL A ++  +  +G
Sbjct: 206 DSFTVSSVLPAFANLLVVKQG 226



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 162/330 (49%), Gaps = 11/330 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE        V +N+LISGY  +    EA+ ++ ++R   +  +S T+  +LP   + 
Sbjct: 163 VFDE--MPVRDLVSWNSLISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANL 220

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             +  G   H   +K G++    V N L+ MY+K       R++FD++  +  +T+N MI
Sbjct: 221 LVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMI 280

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GY +  +    ++++ E       PD +T   VL +C HL   S+   +   +   GF 
Sbjct: 281 CGYLKLEMVEESVKMFLENLD-QFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFV 339

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
               + N LI++YA+CG++  AR +F+ M  K  VSW +II GY   G    A++LF  M
Sbjct: 340 LESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMM 399

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN---KYGLQPGPEHYTCMVDLLGR 297
           +    + D   ++ ++S  +   L D  L++  G+ +   K G+         ++D+  +
Sbjct: 400 MIMEEQADHITYLMLISLSTR--LAD--LKFGKGLHSNGIKSGIYIDLSVSNALIDMYAK 455

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGAC 327
            G++ ++L++  SM    D   W  ++ AC
Sbjct: 456 CGEVGDSLKIFNSMGT-LDTVTWNTVISAC 484



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 165/344 (47%), Gaps = 13/344 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE +     +V YN +I GY+   +V E+V +F +  +Q  + + +T+  +L  C   
Sbjct: 264 VFDEMV--VRDSVTYNTMICGYLKLEMVEESVKMFLENLDQ-FKPDILTVTSVLCACGHL 320

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L L    +   ++ G  L+ +V N L+ +Y KCG +   R +F+ +  K  ++WN++I
Sbjct: 321 RDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSII 380

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGY Q+G     ++L++ M  +    D +T++ ++S    L      L+  + + +NG  
Sbjct: 381 SGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLA----DLKFGKGLHSNGIK 436

Query: 181 SNPFLN----NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
           S  +++    NALI+MYA+CG +  +  IF+ M     V+W  +I      G     +Q+
Sbjct: 437 SGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQV 496

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
             +M K+ + PD   F+  L  C+       G E  +    ++G +   +    ++++  
Sbjct: 497 TTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKE-IHCCLLRFGYESELQIGNALIEMYS 555

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           + G L  +  + E M    D   W  ++ A  ++   E A  +F
Sbjct: 556 KCGCLESSFRVFERM-SRRDVVTWTGMIYAYGMYGEGEKALESF 598


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/526 (40%), Positives = 310/526 (58%), Gaps = 12/526 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICV-- 58
           VFD++ K T     +NAL     L     E + L+ KM   GVE +  T   +L  CV  
Sbjct: 134 VFDKTRKRT--IYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVAS 191

Query: 59  --DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
                +L  G   H    + G +    +   L+ MY + G VDY   +F+ +P + +++W
Sbjct: 192 ECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSW 251

Query: 117 NAMISGYAQNGLATHVLELYREM--KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
           +AMI+ YA+NG A   L  +REM  ++    P++VT V VL +CA L A   G  +   I
Sbjct: 252 SAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYI 311

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
              G  S   + +AL+ MY RCG L   + +FD M  + VVSW ++I  YG+HG+G  A+
Sbjct: 312 LRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAI 371

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
           Q+F+EML +G  P    FVSVL ACSH GL ++G   F  M   +G++P  EHY CMVDL
Sbjct: 372 QIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDL 431

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           LGRA +L+EA ++++ M  EP   VWG+LLG+C+IH NVELAE A  ++  LEP N G Y
Sbjct: 432 LGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNY 491

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
           VLL++IY+EA+  D + RV+ ++  R L+K PG  ++E++ +++ F+  D  +    +I+
Sbjct: 492 VLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSMDEFNPLMEQIH 551

Query: 415 RMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVM 470
             L KL   ++E     ++     +  +EE       HSEKLA+AFG+INTS G  I + 
Sbjct: 552 AFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRIT 611

Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KNLR+C DCHLF K +SK ++++ +VRD  RFH FK+G CSC DYW
Sbjct: 612 KNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 150/324 (46%), Gaps = 18/324 (5%)

Query: 16  NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVK 75
           N LI        + +A+ +  +      +   + +LC    C     L  G+  H   + 
Sbjct: 50  NQLIQSLCKEGKLKQALRVLSQESSPSQQTYELLILC----CGHRSSLSDGLRVHRHILD 105

Query: 76  FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLEL 135
            G D D  +   L+ MY   GSVDY RK+FD+  ++ +  WNA+       G    VL L
Sbjct: 106 NGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGL 165

Query: 136 YREMKSLGVCPDAVTFVGVLSSCA-------HLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
           Y +M  +GV  D  T+  VL +C        HL   + G E+   +   G+ S+ ++   
Sbjct: 166 YWKMNRIGVESDRFTYTYVLKACVASECTADHL---TKGKEIHAHLTRRGYNSHVYIMTT 222

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML--KSGIR 246
           L++MYAR G +  A  +F+GMP + VVSW+A+I  Y  +G    A++ F EM+       
Sbjct: 223 LVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSS 282

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           P+    VSVL AC+     ++G    +G   + GL       + +V + GR G+L+    
Sbjct: 283 PNSVTMVSVLQACASLAALEQG-RLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQR 341

Query: 307 LIESMLVEPDGAVWGALLGACKIH 330
           + + M  + D   W +L+ +  +H
Sbjct: 342 VFDRMH-DRDVVSWNSLISSYGVH 364



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 109/271 (40%), Gaps = 43/271 (15%)

Query: 114 ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQ 173
           I+ N +I    + G     L +  +  S    P   T+  ++  C H  + S GL V + 
Sbjct: 47  ISNNQLIQSLCKEGKLKQALRVLSQESS----PSQQTYELLILCCGHRSSLSDGLRVHRH 102

Query: 174 IQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVA 233
           I  NG   +PFL   LI MY+  G++  AR +FD   ++T+  W A+     + GHGE  
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162

Query: 234 VQLFDEMLKSGIRPDGTAFVSVLSACS---------------HAGLTDKG-------LEY 271
           + L+ +M + G+  D   +  VL AC                HA LT +G       +  
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTT 222

Query: 272 FYGMKNKYGLQPGPEH------------YTCMVDLLGRAGQLNEALELIESMLVE----- 314
              M  ++G      +            ++ M+    + G+  EAL     M+ E     
Sbjct: 223 LVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSS 282

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIK 345
           P+     ++L AC     +E   L  G +++
Sbjct: 283 PNSVTMVSVLQACASLAALEQGRLIHGYILR 313


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/506 (41%), Positives = 303/506 (59%), Gaps = 6/506 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NALISGY       EA+ LF +M +  V+ +  TM+ +L  C     + LG   H  
Sbjct: 201 VSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSW 260

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               G   +  + N L+ +Y+KCG V+    LF+ +  K +I+WN +I GY    L    
Sbjct: 261 IDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEA 320

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG-SNPF-LNNALI 190
           L L++EM   G  P+ VT + +L +CAHLGA  +G  +   I     G SNP  L  +LI
Sbjct: 321 LLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLI 380

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MYA+CG+++ A+ +FD M  +++ SW A+I G+ +HG    A  +F  M K GI PD  
Sbjct: 381 DMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDI 440

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            FV +LSACSH+G+ D G   F  M   Y + P  EHY CM+DLLG +G   EA E+I S
Sbjct: 441 TFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINS 500

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M ++PDG +W +LL ACK+H NVEL E     +IK+EP N+G YVLLSNIY+ A   + +
Sbjct: 501 MEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEV 560

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH--- 427
            + R ++ ++ +KK PG S +E+   VH F++GD+ H +  EIY ML+++E L++E    
Sbjct: 561 AKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHPRNREIYGMLEEMEVLLEEAGFV 620

Query: 428 -DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
            D ++   +   E        HSEKLAIAFG+I+T PGT++ ++KNLR+C +CH   KL+
Sbjct: 621 PDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLI 680

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSC 512
           SKI  R+ I RD TRFHHF  G CSC
Sbjct: 681 SKIYKREIIARDRTRFHHFXDGVCSC 706



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 129/392 (32%), Positives = 193/392 (49%), Gaps = 37/392 (9%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD SI+  +L + +N +  G+ L+S    A+ L+  M   G+  NS T   LL  C   
Sbjct: 59  VFD-SIQEPNLLI-WNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKS 116

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQ------------- 107
                G   H   +K G DLD  V   L+ MYVK G  +  RK+FDQ             
Sbjct: 117 KAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALI 176

Query: 108 ------------------VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
                             +P K +++WNA+ISGYA+ G     LEL++EM    V PD  
Sbjct: 177 KGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDES 236

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
           T V VLS+CA   +  +G +V   I  +GFGSN  + NALI++Y +CG ++ A  +F+G+
Sbjct: 237 TMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGL 296

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
             K V+SW  +IGGY      + A+ LF EML+SG  P+    +S+L AC+H G  D G 
Sbjct: 297 SYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGR 356

Query: 270 E-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACK 328
             + Y  K   G+       T ++D+  + G +  A ++ +SML     + W A++    
Sbjct: 357 WIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSS-WNAMIFGFA 415

Query: 329 IHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
           +H     A   F ++ K  +EP +  +  LLS
Sbjct: 416 MHGRANPAFDIFSRMRKDGIEPDDITFVGLLS 447



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 120/257 (46%), Gaps = 33/257 (12%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           Y   +FD + E  L+ WN M  G+A +      L LY  M SLG+ P++ TF  +L +CA
Sbjct: 55  YAISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACA 114

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
              A   G ++   +   G   + +++ +LI MY + G  + AR +FD    + VVS+TA
Sbjct: 115 KSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTA 174

Query: 220 IIGGYG--------------------------IHGHGEV-----AVQLFDEMLKSGIRPD 248
           +I GY                           I G+ E      A++LF EM+K+ ++PD
Sbjct: 175 LIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPD 234

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
            +  V+VLSAC+ +   + G +  +   + +G     +    ++DL  + G++  A  L 
Sbjct: 235 ESTMVTVLSACAQSASIELGRQ-VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLF 293

Query: 309 ESMLVEPDGAVWGALLG 325
           E  L   D   W  L+G
Sbjct: 294 EG-LSYKDVISWNTLIG 309


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/558 (39%), Positives = 315/558 (56%), Gaps = 44/558 (7%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLN---SLVSEAVSLFGKMREQGVEINSVTMLCLLPIC 57
           VFD     + L   YN++I  Y  +         +  + +M   G+  ++ T+  +L  C
Sbjct: 134 VFDRIDNPSSLL--YNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSC 191

Query: 58  VDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV--------- 108
            D   + +G C H   ++ GL+ DF VG  L+ MYVKCG +   RKLFD++         
Sbjct: 192 ADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWN 251

Query: 109 ----------------------PEKGLITWNAMISGYAQNGLATHVLELYREMKSLG--V 144
                                   + +++W AMISGY QNG A   L L+ EM   G  +
Sbjct: 252 ALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEM 311

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARA 204
            P+ VT V VL +CA   A   G  +       G   N  +  AL  MYA+C +L +AR 
Sbjct: 312 KPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARC 371

Query: 205 IFDGMPR--KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262
            FD + +  K +++W  +I  Y  HG G  AV +F+ ML++G++PD   F+ +LS CSH+
Sbjct: 372 CFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHS 431

Query: 263 GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGA 322
           GL D GL +F  M   + ++P  EHY C+VDLLGRAG+L EA ELI  M ++   +VWGA
Sbjct: 432 GLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGA 491

Query: 323 LLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRL 382
           LL AC+ H+N+E+AELA  ++  LEP N+G YVLLSN+Y+EA   + + ++R +++ + +
Sbjct: 492 LLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGM 551

Query: 383 KKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH----DGTKRSDQKNS 438
           KK PG S++E+ G+ HLFM  D++H Q  EIY+ L+ L   ++      D +      + 
Sbjct: 552 KKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDISE 611

Query: 439 EEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRD 498
           EE   +   HSEKLAIAFG++NT PG  + V KNLRICGDCH   K +SKI +R+ IVRD
Sbjct: 612 EEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRICGDCHAATKFISKIYEREIIVRD 671

Query: 499 ATRFHHFKSGFCSCKDYW 516
             RFH FK G CSC DYW
Sbjct: 672 LNRFHCFKDGSCSCGDYW 689



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 121/279 (43%), Gaps = 37/279 (13%)

Query: 62  YLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMIS 121
           ++ LG   H   V  GL  +  +   ++ MY   G +D    +FD++     + +N++I 
Sbjct: 92  FIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIR 151

Query: 122 GYAQNG---LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
            Y ++G        LE Y  M  LG+  D  T   VL SCA L    +G  V  Q    G
Sbjct: 152 AYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVG 211

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDG------------------------------ 208
              + ++  +LI+MY +CG +  AR +FD                               
Sbjct: 212 LEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFE 271

Query: 209 -MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG--IRPDGTAFVSVLSACSHAGLT 265
            M  + +VSWTA+I GY  +G  E A+ LFDEML+ G  ++P+    VSVL AC+ +   
Sbjct: 272 RMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAAL 331

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
           ++G    +   N  GL       T +  +  +   L EA
Sbjct: 332 ERG-RRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEA 369



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 84/196 (42%), Gaps = 10/196 (5%)

Query: 166 VGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYG 225
           +G +   QI  +G   N FL   ++ MYA  G+L  A  +FD +   + + + +II  Y 
Sbjct: 95  LGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYT 154

Query: 226 IHG---HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQ 282
            HG        ++ +  M   G+  D      VL +C+       G    +G   + GL+
Sbjct: 155 RHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMG-RCVHGQGLRVGLE 213

Query: 283 PGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGK 342
                   ++D+  + G + +A +L + M+V  D A W AL+        + +AE  F +
Sbjct: 214 GDFYVGASLIDMYVKCGVIGDARKLFDKMIVR-DMASWNALIAGYMKEGEIGVAEDLFER 272

Query: 343 -----VIKLEPMNTGY 353
                ++    M +GY
Sbjct: 273 MEHRNIVSWTAMISGY 288


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/435 (42%), Positives = 282/435 (64%), Gaps = 4/435 (0%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+  +V+ G +D  R+LF Q+PEK +++W  MI+G++QNG     L ++  M   GV 
Sbjct: 243 NSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVR 302

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P+ +T V  L +C  +GA  VG  +   + +NGF  N  +  AL++MYA+CGN+K A  +
Sbjct: 303 PNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRV 362

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           F     K +++W+ +I G+ IHG  + A+Q F +M  +GI PD   F+++L+ACSH+G  
Sbjct: 363 FVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNV 422

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           D+GL +F  M+  Y ++P  +HYT +VDLLGRAG+L+EAL  I+SM + PD  +WGAL  
Sbjct: 423 DQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFC 482

Query: 326 ACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKD 385
           AC+ HKN+E+AEL   K+++LEP + G YV LSN+Y+     + + RVR +M+ R ++KD
Sbjct: 483 ACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKD 542

Query: 386 PGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS----DQKNSEEH 441
           PG+SY+E++G+VH F+ GD  H +  EI   L+++    ++      +         EE 
Sbjct: 543 PGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYMPETAWVLHNIEEEEK 602

Query: 442 LNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATR 501
            +    HSEKLA+AFG+I+T+PG+ I ++KNLR+CGDCH  +K  SK+  R+ I+RD  R
Sbjct: 603 EDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKYASKLSRREIILRDIKR 662

Query: 502 FHHFKSGFCSCKDYW 516
           FHHFK G CSC DYW
Sbjct: 663 FHHFKDGTCSCGDYW 677



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 121/233 (51%), Gaps = 4/233 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  +I+G+  N    +A+S+F +M E+GV  N +T++  L  C   G L +G   H  
Sbjct: 271 VSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNY 330

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               G  L+  +G  L+ MY KCG++    ++F +   K L+TW+ MI G+A +G     
Sbjct: 331 LSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQA 390

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           L+ + +MKS G+ PD V F+ +L++C+H G    GL   + ++ + +   P + +   ++
Sbjct: 391 LQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLD-YSIEPTMKHYTLIV 449

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
           ++  R G L +A +    MP     V W A+      H + E+A    +++L+
Sbjct: 450 DLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQ 502



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 116/303 (38%), Gaps = 74/303 (24%)

Query: 97  SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS 156
           S+DY   +F       L  +NA+I G A+N      +  +  M  L + PD +T   VL 
Sbjct: 87  SLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLK 146

Query: 157 S-----------CAHLGAHSVGLEVEQQIQAN-----------GFGSNPF---------- 184
           S           C H G   +GLE +  ++ +           GFG   F          
Sbjct: 147 SVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAE 206

Query: 185 ---LNNALINMYARCGNLKKARAIFDG-------------------------------MP 210
              L N LIN   + G+L KA ++F+                                MP
Sbjct: 207 SILLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMP 266

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270
            K VVSWT +I G+  +G  E A+ +F  ML+ G+RP+    VS L AC+  G    G E
Sbjct: 267 EKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVG-E 325

Query: 271 YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGA---VWGALLGAC 327
             +   +  G Q      T +VD+  + G +  A      + VE  G     W  ++   
Sbjct: 326 RIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSA----SRVFVETKGKDLLTWSVMIWGW 381

Query: 328 KIH 330
            IH
Sbjct: 382 AIH 384



 Score = 42.4 bits (98), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 88/220 (40%), Gaps = 15/220 (6%)

Query: 172 QQIQANGFGSNPFLNN----ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH 227
            QI A  F  N F N+     LI+      +L  A +IF       +  + A+I G   +
Sbjct: 57  HQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAEN 116

Query: 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL-EYFYGMKNKYGLQPGPE 286
              E +V  F  ML+  IRPD      VL +   A L D GL    +G   K GL+    
Sbjct: 117 SRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSV--AALVDVGLGRCLHGGVMKLGLEFDSF 174

Query: 287 HYTCMVDLLGRAGQLNEALELIESMLVEPDGA---VWGALL-GACKIHKNVELAELAFGK 342
               +VD+  + G+L   L+L +            +W  L+ G CK+    + A L    
Sbjct: 175 VRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASL---- 230

Query: 343 VIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRL 382
              +   N G +  L N +    +LD    + + M E+ +
Sbjct: 231 FEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNV 270


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/539 (40%), Positives = 302/539 (56%), Gaps = 35/539 (6%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++ALIS Y  N +  EA+ LF +M   G+ ++ V +L +L  C     +  G   H +
Sbjct: 255 VSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGL 314

Query: 73  CVKFGLDLDFSVGNCLMTMY-------------------------------VKCGSVDYG 101
            VK G++   ++ N L+ MY                               VKCG ++  
Sbjct: 315 VVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKA 374

Query: 102 RKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL 161
           R LFD +P+K  ++W+AMISGYAQ    T  L L++EM+  G  PD    V V+S+C HL
Sbjct: 375 RALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHL 434

Query: 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
            A   G  +   I+ NG   N  L   LINMY + G ++ A  +F G+  K V +W A+I
Sbjct: 435 AALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALI 494

Query: 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281
            G  ++G  + +++ F EM + G+ P+   FV+VL AC H GL D+G  +F  M  ++ +
Sbjct: 495 LGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKI 554

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG 341
            P  +HY CMVDLLGRAG L EA ELIESM + PD + WGALLGACK + + E  E    
Sbjct: 555 GPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGR 614

Query: 342 KVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFM 401
           K+++L P + G+ VLLSNIY+   N   ++ VR MMR+  + K PG S +E  GRVH F+
Sbjct: 615 KLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFL 674

Query: 402 VGDRNHHQTVEIYRMLDKLENLVQ----EHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFG 457
            GD+ H Q   I  MLD++   ++      D  + S   + EE       HSEKLAIAFG
Sbjct: 675 AGDKTHPQNEHIEHMLDEMAKKLKLEGYAPDTREVSLDIDEEEKETTLFRHSEKLAIAFG 734

Query: 458 IINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +I   P T I ++KNLRIC DCH   KL+SK  +R+ +VRD  RFHHFK G CSC DYW
Sbjct: 735 LIAIDPPTPIRIVKNLRICNDCHTAAKLISKAFNREIVVRDRHRFHHFKQGSCSCMDYW 793



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 164/355 (46%), Gaps = 74/355 (20%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD S  S    V +N++++GYVL   V EA  ++ +M E+ V                 
Sbjct: 183 VFDGS--SVLDMVSWNSMLAGYVLVGNVEEAKDVYDRMPERNV----------------- 223

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
                                    N ++ ++ K G+V+   KLF+++ +K L++W+A+I
Sbjct: 224 ----------------------IASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALI 261

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           S Y QN +    L L++EM + G+  D V  + VLS+C+ L     G  V   +   G  
Sbjct: 262 SCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIE 321

Query: 181 SNPFLNNALINMYA-------------------------------RCGNLKKARAIFDGM 209
           +   L NALI+MY+                               +CG ++KARA+FD M
Sbjct: 322 TYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSM 381

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
           P K  VSW+A+I GY         + LF EM   G +PD T  VSV+SAC+H    D+G 
Sbjct: 382 PDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQG- 440

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
           ++ +    K GL+      T ++++  + G + +ALE+ +  L E   + W AL+
Sbjct: 441 KWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKG-LEEKGVSTWNALI 494



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 114/253 (45%), Gaps = 12/253 (4%)

Query: 97  SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS 156
           +++   ++F  +        N M+ GY Q       + +Y+ M    V  D  T+  +  
Sbjct: 75  NINQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQ 134

Query: 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS 216
           SC+   A   G  ++  +   GF S+ ++ N LINMYA CGNL  AR +FDG     +VS
Sbjct: 135 SCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVS 194

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
           W +++ GY + G+ E A  ++D M +  +     A  S++      G  ++  + F  MK
Sbjct: 195 WNSMLAGYVLVGNVEEAKDVYDRMPERNV----IASNSMIVLFGKKGNVEEACKLFNEMK 250

Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGACKIHKNV 333
            K  +      ++ ++    +     EAL L + M    +  D  V  ++L AC     V
Sbjct: 251 QKDLVS-----WSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVV 305

Query: 334 ELAELAFGKVIKL 346
              +L  G V+K+
Sbjct: 306 ITGKLVHGLVVKV 318


>gi|297743669|emb|CBI36552.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/556 (40%), Positives = 307/556 (55%), Gaps = 52/556 (9%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           TV +N ++SG V NS   EA+ +FG M + G+  +S T+  +LP   +   L LGM   C
Sbjct: 172 TVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQC 231

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + +K G      V   L  +Y KCG ++  R LF Q+ +  L+++NAMISGY  N     
Sbjct: 232 LAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETES 291

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            + L++E+   G   ++ + VG++      G   +   +      +G  SN  ++ AL  
Sbjct: 292 SVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTT 351

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD--- 248
           +Y+R   ++ AR +FD    K++ SW A+I GY  +G  E A+ LF EM K  +RP+   
Sbjct: 352 VYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVT 411

Query: 249 -------------------------------------------GTAFVSVLSACSHAGLT 265
                                                      G  F+SVL ACSHAGL 
Sbjct: 412 VTSILSACAQLGALSLGKWVHDLINRESFESNIFMLHSRVSPTGVTFLSVLYACSHAGLV 471

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
            +G E F  M + +G +P PEHY CMVDLLGRAG L++AL+ I  M VEP   VWGALLG
Sbjct: 472 REGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLG 531

Query: 326 ACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKD 385
           AC IHK+  LA LA  K+ +L+P N GYYVLLSNIYS  +N      VR +++ R+L K 
Sbjct: 532 ACMIHKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKT 591

Query: 386 PGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL-----ENLVQEHDGTKRSDQKNSEE 440
           PG + +E+   +H+F  GD++H Q   IY ML+KL     E   Q   GT   D +  E+
Sbjct: 592 PGCTLIEVANTLHIFTSGDQSHPQATAIYAMLEKLTGKMREAGFQTETGTALHDVEEEEK 651

Query: 441 HLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDAT 500
            L   +VHSEKLAIAFG+I + PGTEI ++KNLR+C DCH   K +SKI +R  +VRDA 
Sbjct: 652 ELM-VKVHSEKLAIAFGLITSEPGTEIRIIKNLRVCLDCHNATKFISKITERVIVVRDAN 710

Query: 501 RFHHFKSGFCSCKDYW 516
           RFHHFK G CSC DYW
Sbjct: 711 RFHHFKDGICSCGDYW 726



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 170/384 (44%), Gaps = 46/384 (11%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           YN LI  + LN+  S AVSL+  +R+   +E ++ T   ++        L L +  H I 
Sbjct: 76  YNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASS-LGLGLLLHAHSIV 134

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
             FG DL   VG+ ++  Y K   V   RK+FD + E+  + WN M+SG  +N      +
Sbjct: 135 AGFGSDL--FVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAI 192

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
            ++ +M   G+  D+ T   VL   A L   ++G+ ++      GF S+ ++   L  +Y
Sbjct: 193 LIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLY 252

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
           ++CG ++ AR +F  + +  +VS+ A+I GY  +   E +V+LF E+L SG + + ++ V
Sbjct: 253 SKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIV 312

Query: 254 SV-----------LSACSHAGLTD----------KGLEYFYGMKNKY---------GLQP 283
            +           L+ C H   T             L   Y   N+            + 
Sbjct: 313 GLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEK 372

Query: 284 GPEHYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGACKIHKNVELAELAF 340
               +  M+    + G   +A+ L + M    V P+     ++L AC      +L  L+ 
Sbjct: 373 SLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSAC-----AQLGALSL 427

Query: 341 GK----VIKLEPMNTGYYVLLSNI 360
           GK    +I  E   +  ++L S +
Sbjct: 428 GKWVHDLINRESFESNIFMLHSRV 451


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/557 (37%), Positives = 313/557 (56%), Gaps = 45/557 (8%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF+E        V +NA+ISGYV + +V EA  LF +M  + V ++  T   +L  C + 
Sbjct: 250 VFEEV--DVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANA 307

Query: 61  GYLWLGMCCHCICVK----FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
           G+   G   H    +    F  +    V N L+T+Y KCG++   R++FD +  K +++W
Sbjct: 308 GFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSW 367

Query: 117 NA-------------------------------MISGYAQNGLATHVLELYREMKSLGVC 145
           N                                M+SGY   G +   L+L+  M++  V 
Sbjct: 368 NTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVK 427

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P   T+ G +S+C  LG+   G ++   +   GF  +    NALI MYARCG +K+A  +
Sbjct: 428 PCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLM 487

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           F  MP    VSW A+I   G HGHG  A++LFD M+  GI PD  +F++VL+AC+H+GL 
Sbjct: 488 FLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLV 547

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           D+G +YF  MK  +G+ PG +HYT ++DLLGRAG++ EA +LI++M  EP  ++W A+L 
Sbjct: 548 DEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILS 607

Query: 326 ACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKD 385
            C+   ++EL   A  ++ K+ P + G Y+LLSN YS A       RVR +MR+R +KK+
Sbjct: 608 GCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKE 667

Query: 386 PGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD----KLENL--VQEHDGTKRSDQKNSE 439
           PG S++E   +VH+F+VGD  H +  ++Y+ L+    ++  L  V +        + + +
Sbjct: 668 PGCSWIEAGNKVHVFVVGDTKHPEAHKVYKFLEMVGARMRKLGYVPDTKVVLHDMEPHQK 727

Query: 440 EHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDA 499
           EH+     HSE+LA+ FG++   PG  + V+KNLRIC DCH  +  +SK V R+ +VRD 
Sbjct: 728 EHI--LFAHSERLAVGFGLLKLPPGATVTVLKNLRICDDCHAVMMFMSKAVGREIVVRDV 785

Query: 500 TRFHHFKSGFCSCKDYW 516
            RFHHFK G CSC +YW
Sbjct: 786 RRFHHFKDGECSCGNYW 802



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 168/401 (41%), Gaps = 74/401 (18%)

Query: 2   FDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDP 60
           FD   ++   TV +NA+IS Y   S  + AV++F  +   G +  +  +   LL      
Sbjct: 111 FDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHL 170

Query: 61  GYLWLGMCCH--CICVKFGLDLDFSVGNCLMTMYVKCGSVDY---GRKLFDQVPEKGLIT 115
             + +  C    C  +K G     SV N L+ +Y+KC +++     RK+ D++P+K  +T
Sbjct: 171 PNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALT 230

Query: 116 W-------------------------------NAMISGYAQNGLATHVLELYREMKSLGV 144
           W                               NAMISGY  +G+     EL+R M    V
Sbjct: 231 WTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERV 290

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQI---QANGFGSNPF-LNNALINMYARCGNLK 200
             D  TF  VLS+CA+ G  + G  V  QI   Q N        +NNAL+ +Y++CGN+ 
Sbjct: 291 PLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIA 350

Query: 201 KARAIFDGMPRKTVVSWTAIIGGY------------------------------GIH-GH 229
            AR IFD M  K VVSW  I+ GY                               +H G 
Sbjct: 351 VARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGF 410

Query: 230 GEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYT 289
            E A++LF+ M    ++P    +   +SAC   G    G +  +G   + G +       
Sbjct: 411 SEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHG-KQLHGHLVQLGFEGSNSAGN 469

Query: 290 CMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
            ++ +  R G + EA  L+  ++   D   W A++ A   H
Sbjct: 470 ALITMYARCGAVKEA-NLMFLVMPNIDSVSWNAMISALGQH 509


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/510 (40%), Positives = 298/510 (58%), Gaps = 46/510 (9%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            VC+NA+I GY+    V  A  LF  M ++ +                            
Sbjct: 205 AVCWNAMIDGYLRFGEVEAARELFEGMPDRSM---------------------------- 236

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                      S  N +++ + +CG V+  R+ FD++ E+  I+W+AMI GY Q G    
Sbjct: 237 ----------ISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFME 286

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            LE++ +M+   + P       VLS+CA+LGA   G  +    + N    +  L  +L++
Sbjct: 287 ALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVD 346

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+CG +  A  +F+ M  K V SW A+IGG  +HG  E A+ LF +M    I P+   
Sbjct: 347 MYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DIYPNEIT 403

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           FV VL+AC+H GL  KGL  F  M+ +YG++P  EHY C+VDLLGRAG L EA +++ S+
Sbjct: 404 FVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSI 463

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
             EP  AVWGALLGAC+ H NVEL E     +++LEP N+G Y LLSNIY++A   + + 
Sbjct: 464 PTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVG 523

Query: 372 RVRMMMRERRLKKDPGYSYVEL-KGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ----E 426
            VR +M+ER +K  PG S ++L +G VH F++GD +H Q  +IY+MLDK++  +Q    E
Sbjct: 524 EVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYE 583

Query: 427 HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
            D ++     + EE       HSEKLAI FG+INTSPGT I ++KNLR+C DCH   KL+
Sbjct: 584 PDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLI 643

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           S++ +R+ IVRD  R+HHF++G CSCKD+W
Sbjct: 644 SQVYNREIIVRDRIRYHHFRNGACSCKDFW 673



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 139/344 (40%), Gaps = 71/344 (20%)

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDY-----GRKLFDQVPEKGLITWNAMISGY 123
            H + ++ G   D  +   L+  Y    +  Y       ++FD V +  +  WN MI   
Sbjct: 54  AHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVC 113

Query: 124 AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP 183
            +N      + LY EM      P+  T+  VL +C+  G  + G++V   +  +G G + 
Sbjct: 114 IENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDG 173

Query: 184 FLNNALINMYA--------------------------------RCGNLKKARAIFDGMPR 211
            + ++ I MYA                                R G ++ AR +F+GMP 
Sbjct: 174 HILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPD 233

Query: 212 KTVVS-WTAIIGGYGIHGHGEVAVQLFDE------------------------------- 239
           ++++S W A+I G+   G  EVA + FDE                               
Sbjct: 234 RSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQ 293

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M K  IRP      SVLSAC++ G  D+G  + +    +  +Q      T +VD+  + G
Sbjct: 294 MQKEKIRPRKFVLPSVLSACANLGALDQG-RWIHTYAKRNSIQLDGVLGTSLVDMYAKCG 352

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
           +++ A E+ E M    + + W A++G   +H   E A   F K+
Sbjct: 353 RIDLAWEVFEKM-SNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM 395


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/514 (41%), Positives = 303/514 (58%), Gaps = 22/514 (4%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T  +N +I+G+  N  + +A  LF  M  +    N VT   ++   V+ G L        
Sbjct: 69  TPSWNTMITGFAQNQQMDKARDLFLIMPTK----NVVTWNAMISGYVECGDL-------D 117

Query: 72  ICVKFGLDLDFS---VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
             +K      F        ++T Y+K G +    +LF+++PEK L+TWNAMI+GY +N  
Sbjct: 118 SALKLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHR 177

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
           A   ++L+R M   G+ P++ T    L  C+ L A  +G +V Q +  +    +     +
Sbjct: 178 AEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTS 237

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           LI+MY +CG L+    +F  +PR+ VV+W A+I GY  HG G+ A+ LFDEM++ G++PD
Sbjct: 238 LISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPD 297

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
              FV+VL AC+HAG TD G++YF+ M   YGL   P+HYTCMVDLLGRAG+L EA++LI
Sbjct: 298 WITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLI 357

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
           E M  +P  AV+G LLGAC+IHKN E+AE A  K++ L+P +   YV L+N+Y+  +  D
Sbjct: 358 EKMPFKPHAAVFGTLLGACRIHKNTEMAEFASQKLLNLDPASATGYVQLANVYAATKRWD 417

Query: 369 GIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY------RMLDKLEN 422
            + RVR  M+  ++ K PGYS++E+K   H F  GD+ H +   I+          KL  
Sbjct: 418 HVARVRKSMKSCKVVKTPGYSWIEVKSMAHQFRSGDKFHPELASIHGKLKELEKKMKLAG 477

Query: 423 LVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLF 482
            V + +       +  +E L     HSEKLAIA+G+I   PGT I V KNLR+CGDCH  
Sbjct: 478 YVPDLEFALHDVGEEQKEQL--LLWHSEKLAIAYGLIKLPPGTPIRVFKNLRVCGDCHRA 535

Query: 483 IKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           IK +S+I  R+ IVRD TRFHHFK G CSC DYW
Sbjct: 536 IKYISQIERREIIVRDTTRFHHFKDGHCSCADYW 569



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 88/179 (49%), Gaps = 16/179 (8%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N +++ YV+  +++  +  F+ +P K   +WN MI+G+AQN       +L+  M +  V 
Sbjct: 42  NTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNV- 100

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN----NALINMYARCGNLKK 201
              VT+  ++S     G     L++        F   PF +     A+I  Y + G +  
Sbjct: 101 ---VTWNAMISGYVECGDLDSALKL--------FEKAPFKSVVAWTAMITGYMKLGRIGL 149

Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
           A  +F+ MP K +V+W A+I GY  +   E  V+LF  M+  GI+P+ +   S L  CS
Sbjct: 150 AERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCS 208


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/508 (39%), Positives = 302/508 (59%), Gaps = 4/508 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +NALISG        EA S+F  +R++G+ +N  T+  +L               H +
Sbjct: 277 ILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHAL 336

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K G   D  V N L+  Y KC  +    ++F++     +I   +MI+  +Q       
Sbjct: 337 AEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGA 396

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           ++L+ EM   G+ PD      +L++CA L A+  G +V   +    F S+ F  NAL+  
Sbjct: 397 IKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYT 456

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG+++ A   F  +P + VVSW+A+IGG   HGHG+ A++LF  M+  GI P+    
Sbjct: 457 YAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITM 516

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            SVL AC+HAGL D+   YF  MK  +G+    EHY+CM+DLLGRAG+L++A+EL+ SM 
Sbjct: 517 TSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMP 576

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            + + +VWGALLGA ++HK+ EL +LA  K+  LEP  +G +VLL+N Y+ +   + + +
Sbjct: 577 FQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAK 636

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR +M++  +KK+P  S+VE+K +VH F+VGD++H  T EIY  LD+L +L+ +      
Sbjct: 637 VRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPN 696

Query: 433 SDQKNSEEHLNDTEV----HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
            D    +   ++ E+    HSE+LA+AF +++T PG  I V KNLRIC DCH+  K +S 
Sbjct: 697 VDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISN 756

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           IV R+ I+RD  RFHHF+ G CSC DYW
Sbjct: 757 IVSREIIIRDINRFHHFRDGTCSCGDYW 784



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 176/387 (45%), Gaps = 36/387 (9%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE+  S    V +N L+S YV N    +A+ +FG+M   G++       C++  C   
Sbjct: 64  VFDEA-GSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGS 122

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             +  G   H + V+ G + D    N L+ MYVK G VD    +F+++P+  +++WNA+I
Sbjct: 123 RNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALI 182

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ-QIQANGF 179
           SG   NG     +EL  +MKS G+ P+      +L +CA  GA  +G ++    I+AN  
Sbjct: 183 SGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANA- 241

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            S+ ++   L++MYA+   L  A  +FD M  + ++ W A+I G    G  + A  +F  
Sbjct: 242 DSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYG 301

Query: 240 MLKSGIRPDGTAFVSVLSACS-----------HAGLTDKGLEY----FYGMKNKY----- 279
           + K G+  + T   +VL + +           HA     G  +      G+ + Y     
Sbjct: 302 LRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSC 361

Query: 280 ---GLQPGPE-------HYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGA 326
               ++   E         T M+  L +      A++L   ML   +EPD  V  +LL A
Sbjct: 362 LSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNA 421

Query: 327 CKIHKNVELAELAFGKVIKLEPMNTGY 353
           C      E  +     +IK + M+  +
Sbjct: 422 CASLSAYEQGKQVHAHLIKRQFMSDAF 448



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 161/347 (46%), Gaps = 3/347 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +NALISG VLN     A+ L  +M+  G+  N   +  +L  C   G   LG   H 
Sbjct: 175 VVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHG 234

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K   D D  +G  L+ MY K   +D   K+FD +  + LI WNA+ISG +  G    
Sbjct: 235 FMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDE 294

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
              ++  ++  G+  +  T   VL S A L A S   +V    +  GF  +  + N LI+
Sbjct: 295 AFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLID 354

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
            Y +C  L  A  +F+      +++ T++I       HGE A++LF EML+ G+ PD   
Sbjct: 355 SYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFV 414

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
             S+L+AC+     ++G +    +  +  +         +V    + G + +A EL  S 
Sbjct: 415 LSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAG-NALVYTYAKCGSIEDA-ELAFSS 472

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           L E     W A++G    H + + A   FG+++  E +N  +  + S
Sbjct: 473 LPERGVVSWSAMIGGLAQHGHGKRALELFGRMVD-EGINPNHITMTS 518



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 141/291 (48%), Gaps = 6/291 (2%)

Query: 38  MREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS 97
           MR +GV  N   +  +L    D     LG   H + +  G   D  V N L+ MY   G 
Sbjct: 1   MRAEGVCCNEFALPVVLKCVPDAQ---LGAQVHAMAMATGFGSDVFVANALVAMYGGFGF 57

Query: 98  VDYGRKLFDQV-PEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS 156
           +D  R++FD+   E+  ++WN ++S Y +N      ++++ EM   G+ P    F  V++
Sbjct: 58  MDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 117

Query: 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS 216
           +C        G +V   +   G+  + F  NAL++MY + G +  A  IF+ MP   VVS
Sbjct: 118 ACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVS 177

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
           W A+I G  ++GH   A++L  +M  SG+ P+     S+L AC+ AG  D G +  +G  
Sbjct: 178 WNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQ-IHGFM 236

Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
            K            +VD+  +   L++A+++ + M    D  +W AL+  C
Sbjct: 237 IKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWM-SHRDLILWNALISGC 286



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 100/206 (48%), Gaps = 18/206 (8%)

Query: 139 MKSLGVCPDAVTFVGVLSSC--AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196
           M++ GVC +      VL     A LGA     +V     A GFGS+ F+ NAL+ MY   
Sbjct: 1   MRAEGVCCNEFALPVVLKCVPDAQLGA-----QVHAMAMATGFGSDVFVANALVAMYGGF 55

Query: 197 GNLKKARAIFD-GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSV 255
           G +  AR +FD     +  VSW  ++  Y  +     A+Q+F EM+ SGI+P    F  V
Sbjct: 56  GFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCV 115

Query: 256 LSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEP 315
           ++AC+ +   D G +  + M  + G +        +VD+  + G+++ A  + E M   P
Sbjct: 116 VNACTGSRNIDAGRQ-VHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKM---P 171

Query: 316 DGAV--WGALLGACKI----HKNVEL 335
           D  V  W AL+  C +    H+ +EL
Sbjct: 172 DSDVVSWNALISGCVLNGHDHRAIEL 197


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/520 (40%), Positives = 309/520 (59%), Gaps = 6/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +    T  +NA+++G +      E + LF +M E G   +   +  +L  C   
Sbjct: 140 MFDEMPERNVAT--WNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGL 197

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H    K G + +  V + L  MY+KCGS+  G +L   +P + ++ WN +I
Sbjct: 198 RALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLI 257

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +G AQNG    VL+ Y  MK  G  PD +TFV V+SSC+ L     G ++  ++   G  
Sbjct: 258 AGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGAS 317

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
               + ++LI+MY+RCG L+ +  +F       VV W+++I  YG HG G  A+ LF++M
Sbjct: 318 LIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQM 377

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            +  +  +   F+S+L ACSH GL +KG+++F  M  KYG++P  EHYTCMVDLLGR G 
Sbjct: 378 EQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGS 437

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           + EA  LI SM V+ D   W  LL ACKIHK  E+A     +V +L+P +   YVLLSNI
Sbjct: 438 VEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMARRISEEVFRLDPRDPVPYVLLSNI 497

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           ++  +  D +  VR  MR+R+LKK+PG S++E+K ++H F +GD++H ++VEI   L +L
Sbjct: 498 HASDKRWDDVSDVRKAMRDRKLKKEPGISWLEVKNQIHQFCMGDKSHPKSVEIASYLREL 557

Query: 421 ENLVQEHDGTKRSDQKNSEEHLNDTEV----HSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
            + +++       D    +  + D E     HSEKLAIAF ++ T  GT I V+KNLR+C
Sbjct: 558 TSEMKKRGYVPDIDSVLHDMDVEDKEYSLVHHSEKLAIAFALLYTPVGTPIRVIKNLRVC 617

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DCH+ IK +S+I +R+ IVRD++RFHHFK+G CSC DYW
Sbjct: 618 SDCHVAIKYISEISNREIIVRDSSRFHHFKNGRCSCGDYW 657



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 150/339 (44%), Gaps = 37/339 (10%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYG----------- 101
           LL  C+    L LG   H + +  G   D  + N L+ +Y KCG +D             
Sbjct: 58  LLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMPRKN 117

Query: 102 --------------------RKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKS 141
                               RK+FD++PE+ + TWNAM++G  Q       L L+  M  
Sbjct: 118 IMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNE 177

Query: 142 LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKK 201
           LG  PD      VL  CA L A   G +V   ++  GF  N  + ++L +MY +CG+L +
Sbjct: 178 LGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGE 237

Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261
              +   MP + VV+W  +I G   +G+ E  +  ++ M  +G RPD   FVSV+S+CS 
Sbjct: 238 GERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSE 297

Query: 262 AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWG 321
                +G +  +    K G        + ++ +  R G L  +L++        D   W 
Sbjct: 298 LATLGQG-QQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLE-CENGDVVCWS 355

Query: 322 ALLGACKIH-KNVELAELAFGKV--IKLEPMNTGYYVLL 357
           +++ A   H + VE  +L F ++   KLE  +  +  LL
Sbjct: 356 SMIAAYGFHGRGVEAIDL-FNQMEQEKLEANDVTFLSLL 393



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 5/133 (3%)

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
           F  +L SC    + S+G ++   I  +G  S+ F++N L+N+Y++CG L  A  +F  MP
Sbjct: 55  FSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMP 114

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270
           RK ++S   +I GY   G    A ++FDEM +  +      + ++++        ++GL 
Sbjct: 115 RKNIMSCNILINGYFRSGDWVTARKMFDEMPERNV----ATWNAMVAGLIQFEFNEEGLG 170

Query: 271 YFYGMKNKYGLQP 283
            F  M N+ G  P
Sbjct: 171 LFSRM-NELGFLP 182


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/509 (41%), Positives = 312/509 (61%), Gaps = 10/509 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA++SGY  N L  EA+ LF +M   G+E +  T + ++  C   G   L       
Sbjct: 226 VSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRT 285

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             +  + L+  V   L+ MY K G +D  RKLF+ +P + ++TWN+MI+GYAQNG +   
Sbjct: 286 LHQKRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMA 345

Query: 133 LELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
           +EL++EM  +  + PD VT V V+S+C HLGA  +G  V + +  N    +   +NA+I 
Sbjct: 346 IELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIF 405

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY+RCG+++ A+ +F  M  + VVS+  +I G+  HGHG  A+ L   M + GI PD   
Sbjct: 406 MYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVT 465

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+ VL+ACSHAGL ++G + F  +K+     P  +HY CMVDLLGR G+L +A   +E M
Sbjct: 466 FIGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKRTMERM 520

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            +EP   V+G+LL A +IHK VEL ELA  K+ +LEP N+G ++LLSNIY+ A     + 
Sbjct: 521 PMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVE 580

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE--HDG 429
           R+R  M++  +KK  G+S+VE  G++H F+V DR+H ++ +IY++L +L   ++E  +  
Sbjct: 581 RIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIA 640

Query: 430 TKRSDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
            K    ++ EE   +  V  HSEKLAI + ++ +  G  I V+KNLR+C DCH  IK++S
Sbjct: 641 DKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMIS 700

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K+  R  IVRD  RFH F  G CSCKDYW
Sbjct: 701 KLEGRVIIVRDNNRFHCFNDGLCSCKDYW 729



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 150/312 (48%), Gaps = 41/312 (13%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE          +NA++SGY       +A  LF  M E+ V                 
Sbjct: 152 VFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERNV----------------- 194

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
              W  M                     +T Y K   ++  R+ FD +PE+ +++WNAM+
Sbjct: 195 -ITWTAM---------------------VTGYAKVKDLEAARRYFDCMPERSVVSWNAML 232

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGYAQNGLA   L L+ EM + G+ PD  T+V V+S+C+  G   +   + + +      
Sbjct: 233 SGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQ 292

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            N F+  AL++MYA+ G+L  AR +F+ MP + VV+W ++I GY  +G   +A++LF EM
Sbjct: 293 LNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEM 352

Query: 241 LKS-GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           + +  + PD    VSV+SAC H G  + G  +      +  ++     +  M+ +  R G
Sbjct: 353 ITAKKLTPDEVTMVSVISACGHLGALELG-NWVVRFLTENQIKLSISGHNAMIFMYSRCG 411

Query: 300 QLNEALELIESM 311
            + +A  + + M
Sbjct: 412 SMEDAKRVFQEM 423



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 113/276 (40%), Gaps = 70/276 (25%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           Y   LF+      +  + +M+  Y+       V+ +Y +M+  GV PDA  +  ++ S  
Sbjct: 52  YTHLLFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKS-- 109

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG----------- 208
              A + G+     +   G GS+ F+ NA+I+MYAR G +  AR +FD            
Sbjct: 110 ---AGTGGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADW 166

Query: 209 ----------------------MPRKTVVSWTAII------------------------- 221
                                 MP + V++WTA++                         
Sbjct: 167 NAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVV 226

Query: 222 ------GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
                  GY  +G  E A++LFDEM+ +GI PD T +V+V+SACS  G           +
Sbjct: 227 SWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTL 286

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
             K  +Q      T ++D+  + G L+ A +L  +M
Sbjct: 287 HQKR-IQLNCFVRTALLDMYAKFGDLDSARKLFNTM 321



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 91/239 (38%), Gaps = 62/239 (25%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF E   +T   V YN LISG+  +    EA++L   M+E G+E + VT + +L  C   
Sbjct: 419 VFQE--MATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHA 476

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L                                   + GRK+F+ + +  +  +  M+
Sbjct: 477 GLL-----------------------------------EEGRKVFESIKDPAIDHYACMV 501

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
               + G    + +  R M+ + + P A  +  +L++            + +Q++     
Sbjct: 502 DLLGRVG---ELEDAKRTMERMPMEPHAGVYGSLLNAS----------RIHKQVELGELA 548

Query: 181 SNPFL----NNA-----LINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIH 227
           +N       +N+     L N+YA  G  K    I + M +   K    W+ +  G  +H
Sbjct: 549 ANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLH 607


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/521 (39%), Positives = 320/521 (61%), Gaps = 8/521 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD      H  V +  +I+ Y  +S  SEA+  F   +++G++++ + M  +L  C   
Sbjct: 422 VFDRMRIKDH--VSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGL 479

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             + L    H   ++ GL LD  + N ++ +Y +CG V Y   +F+ + +K ++TW +M+
Sbjct: 480 KSISLLKQVHSYAIRNGL-LDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMV 538

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           + +A+NGL    + L+ +M + G+ PD+V  VG+L + A L + + G E+   +    F 
Sbjct: 539 NCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFP 598

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
               + ++L++MY+ CG++  A  +FD    K VV WTA+I   G+HGHG+ A+ +F  M
Sbjct: 599 VEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRM 658

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           L++G+ PD  +F+++L ACSH+ L D+G  Y   M +KY LQP  EHY C+VDLLGR+GQ
Sbjct: 659 LETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQ 718

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
             EA + I+SM +EP   VW ALLGAC+IHKN ELA +A  K+++LEP N G YVL+SN+
Sbjct: 719 TEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNV 778

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           ++E    + +  +R  M E+ L+KDP  S++E+   VH F   D +H  +  I+  L ++
Sbjct: 779 FAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEI 838

Query: 421 -ENLVQE----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRI 475
            E L +E     D +      + EE ++    HSE+LAI+FG+I+T+ GT + + KNLR+
Sbjct: 839 TEKLRREGQYVEDTSFVLHDVSEEEKIDLLHRHSERLAISFGLISTASGTPLRIAKNLRV 898

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           CGDCH F KLVSK+ +R+ +VRDA RFHHF  G CSC D+W
Sbjct: 899 CGDCHEFTKLVSKLFEREIVVRDANRFHHFSGGTCSCGDFW 939



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 192/374 (51%), Gaps = 7/374 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N+++S YV N L +EA+  FG+M + G   +   ++ LL      G L  G   H  
Sbjct: 331 ISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAY 390

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK  LD D  + N LM MY+KC SV+   ++FD++  K  ++W  +I+ YAQ+   +  
Sbjct: 391 AVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEA 450

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           +  +R  +  G+  D +    +L +C+ L + S+  +V      NG   +  L N +I++
Sbjct: 451 IGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGL-LDLILKNRIIDI 509

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y  CG +  A  IF+ + +K +V+WT+++  +  +G    AV LF +ML +GI+PD  A 
Sbjct: 510 YGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVAL 569

Query: 253 VSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           V +L A +      KG E + + ++ K+ ++      + +VD+    G +N AL++ +  
Sbjct: 570 VGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAV--VSSLVDMYSGCGSMNYALKVFDEA 627

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDG 369
             + D  +W A++ A  +H + + A   F ++++  + P +  +  LL          +G
Sbjct: 628 KCK-DVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEG 686

Query: 370 IMRVRMMMRERRLK 383
              + MM+ + +L+
Sbjct: 687 KFYLDMMVSKYKLQ 700



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 163/335 (48%), Gaps = 14/335 (4%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N+ ISG V N +  EA+ LF +M+  G  +NS T + +L +C +   L  G   H   +
Sbjct: 233 WNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALL 292

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K G + +    N L+ MY +CG VD   ++F ++ +K  I+WN+M+S Y QN L    ++
Sbjct: 293 KCGTEFNIQC-NALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAID 351

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
            + EM   G  PD    V +LS+  HLG    G EV          S+  + N L++MY 
Sbjct: 352 FFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYI 411

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +C +++ +  +FD M  K  VSWT II  Y        A+  F    K GI+ D     S
Sbjct: 412 KCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGS 471

Query: 255 VLSACSHAGLTDKGLEYFYGMK--NKYGLQPGPEHYTC---MVDLLGRAGQLNEALELIE 309
           +L ACS       GL+    +K  + Y ++ G         ++D+ G  G++  AL + E
Sbjct: 472 ILEACS-------GLKSISLLKQVHSYAIRNGLLDLILKNRIIDIYGECGEVCYALNIFE 524

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI 344
            ML + D   W +++     +  +  A   FGK++
Sbjct: 525 -MLDKKDIVTWTSMVNCFAENGLLHEAVALFGKML 558



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 111/385 (28%), Positives = 184/385 (47%), Gaps = 27/385 (7%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQ----GVEINSVTMLCLLPICVDPGYLWLGMCCH 70
           +NALI   + +    EAV ++  MR      G   +  T+  +L  C   G    G   H
Sbjct: 127 WNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVH 186

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE-KGLITWNAMISGYAQNGLA 129
            + VK GLD    V N L+ MY KCG +D   ++F+ + + + + +WN+ ISG  QNG+ 
Sbjct: 187 GLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMF 246

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              L+L+R M+S G   ++ T VGVL  CA L   + G E+   +   G   N    NAL
Sbjct: 247 LEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFN-IQCNAL 305

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           + MYARCG +  A  +F  +  K  +SW +++  Y  +     A+  F EM+++G  PD 
Sbjct: 306 LVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDH 365

Query: 250 TAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
              VS+LSA  H G    G E + Y +K +  L    +    ++D+  +   +  +  + 
Sbjct: 366 ACIVSLLSAVGHLGRLINGREVHAYAVKQR--LDSDLQIANTLMDMYIKCYSVECSARVF 423

Query: 309 ESMLVEPDGAVWGALLG----ACKIHKNVELAELAFGKVIKLEPMNTGYYV--------- 355
           + M ++ D   W  ++     + +  + +     A  + IK++PM  G  +         
Sbjct: 424 DRMRIK-DHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSI 482

Query: 356 -LLSNIYSEA-RN--LDGIMRVRMM 376
            LL  ++S A RN  LD I++ R++
Sbjct: 483 SLLKQVHSYAIRNGLLDLILKNRII 507



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 137/309 (44%), Gaps = 19/309 (6%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKS----LG 143
           L+ MY KCG +    +LFD +P + + +WNA+I     +G A   + +YR M++     G
Sbjct: 99  LLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAG 158

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
             PD  T   VL +C   G    G EV      +G   +  + NAL+ MYA+CG L  A 
Sbjct: 159 AAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSAL 218

Query: 204 AIFDGMPR-KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262
            +F+ M   + V SW + I G   +G    A+ LF  M   G   +    V VL  C+  
Sbjct: 219 RVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAEL 278

Query: 263 GLTDKGLEYFYGMKNKYGLQPGPE---HYTCMVDLLGRAGQLNEALELIESMLVEPDGAV 319
              + G E    +     L+ G E       ++ +  R G ++ AL +    + + D   
Sbjct: 279 AQLNHGRELHAAL-----LKCGTEFNIQCNALLVMYARCGWVDSALRVFRE-IGDKDYIS 332

Query: 320 WGALLGACKIHKNVELAELA-FGKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMM 376
           W ++L +C +   +    +  FG++++    P +     LLS +    R ++G   V   
Sbjct: 333 WNSML-SCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLING-REVHAY 390

Query: 377 MRERRLKKD 385
             ++RL  D
Sbjct: 391 AVKQRLDSD 399



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 80/185 (43%), Gaps = 11/185 (5%)

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF 206
           D V     +S    L AH+V         A G     FL   L+ MY +CG L  A  +F
Sbjct: 63  DLVAVRRAVSEGRQLHAHAVA------TGALGDDDAGFLATKLLFMYGKCGRLPDAHRLF 116

Query: 207 DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS----GIRPDGTAFVSVLSACSHA 262
           DGMP +TV SW A+IG     G    AV ++  M  S    G  PDG    SVL AC   
Sbjct: 117 DGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAE 176

Query: 263 GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGA 322
           G    G E  +G+  K GL         +V +  + G L+ AL + E M    D A W +
Sbjct: 177 GDGRCGSE-VHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNS 235

Query: 323 LLGAC 327
            +  C
Sbjct: 236 AISGC 240


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/540 (39%), Positives = 314/540 (58%), Gaps = 38/540 (7%)

Query: 15  YNALISGYVLNSLVSEAVSLFGK--MREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           YNAL+  +  ++     +S F    +       +  T   +L  C     +  G   HC 
Sbjct: 93  YNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCF 152

Query: 73  CVKFG-----------LDLDFSVG--------------------NCLMTMYVKCGSVDYG 101
             K+G           +DL F VG                    N L++ Y   G VD  
Sbjct: 153 VTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKA 212

Query: 102 RKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG-VCPDAVTFVGVLSSCAH 160
           R +FD + EK L++W+ MISGYA+N      +EL+R+M+  G + P+ VT V VLS+CAH
Sbjct: 213 RMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAH 272

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           LGA  +G  + + I+ N      FL NAL +MYA+CG + +A+ +F  M  + V+SW+ I
Sbjct: 273 LGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSII 332

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           I G  ++G+   A   F EM++ G+ P+  +F+ +L+AC+HAGL DKGLEYF  M   YG
Sbjct: 333 IMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYG 392

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           + P  EHY C+VDLL RAG+L++A  LI SM ++P+  VWGALLG C+I+K+ E  E   
Sbjct: 393 ITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVV 452

Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400
            ++++L+  ++G  V L+N+Y+    LD     R+ MR+ +  K PG S++E+   V+ F
Sbjct: 453 WRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEF 512

Query: 401 MVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAF 456
            +GD +H Q++ IY M+ +L+  ++      ++D      + EE  +    HSEKLA+AF
Sbjct: 513 FMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAF 572

Query: 457 GIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           G+INTS GT I ++KNLR+C DCH  IK++SKIV+R+ +VRD +RFHHFK G CSC DYW
Sbjct: 573 GLINTSEGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCSCNDYW 632


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/508 (39%), Positives = 302/508 (59%), Gaps = 4/508 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +NALISG        EA S+F  +R++G+ +N  T+  +L               H +
Sbjct: 370 ILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHAL 429

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K G   D  V N L+  Y KC  +    ++F++     +I   +MI+  +Q       
Sbjct: 430 AEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGA 489

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           ++L+ EM   G+ PD      +L++CA L A+  G +V   +    F S+ F  NAL+  
Sbjct: 490 IKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYT 549

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG+++ A   F  +P + VVSW+A+IGG   HGHG+ A++LF  M+  GI P+    
Sbjct: 550 YAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITM 609

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            SVL AC+HAGL D+   YF  MK  +G+    EHY+CM+DLLGRAG+L++A+EL+ SM 
Sbjct: 610 TSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMP 669

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            + + +VWGALLGA ++HK+ EL +LA  K+  LEP  +G +VLL+N Y+ +   + + +
Sbjct: 670 FQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAK 729

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR +M++  +KK+P  S+VE+K +VH F+VGD++H  T EIY  LD+L +L+ +      
Sbjct: 730 VRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPN 789

Query: 433 SDQKNSEEHLNDTEV----HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
            D    +   ++ E+    HSE+LA+AF +++T PG  I V KNLRIC DCH+  K +S 
Sbjct: 790 VDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISN 849

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           IV R+ I+RD  RFHHF+ G CSC DYW
Sbjct: 850 IVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 159/328 (48%), Gaps = 8/328 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE     H  V +++L++ Y  N L   A+  F  MR +GV  N   +  +L    D 
Sbjct: 59  VFDEIPDPCH--VSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDA 116

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV-PEKGLITWNAM 119
               LG   H + +  G   D  V N L+ MY   G +D  R++FD+   E+  ++WN +
Sbjct: 117 Q---LGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGL 173

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           +S Y +N      ++++ EM   G+ P    F  V+++C        G +V   +   G+
Sbjct: 174 MSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGY 233

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             + F  NAL++MY + G +  A  IF+ MP   VVSW A+I G  ++GH   A++L  +
Sbjct: 234 EKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQ 293

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M  SG+ P+     S+L AC+ AG  D G +  +G   K            +VD+  +  
Sbjct: 294 MKSSGLVPNVFMLSSILKACAGAGAFDLGRQ-IHGFMIKANADSDDYIGVGLVDMYAKNH 352

Query: 300 QLNEALELIESMLVEPDGAVWGALLGAC 327
            L++A+++ + M    D  +W AL+  C
Sbjct: 353 FLDDAMKVFDWM-SHRDLILWNALISGC 379



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 176/387 (45%), Gaps = 36/387 (9%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE+  S    V +N L+S YV N    +A+ +FG+M   G++       C++  C   
Sbjct: 157 VFDEA-GSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGS 215

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             +  G   H + V+ G + D    N L+ MYVK G VD    +F+++P+  +++WNA+I
Sbjct: 216 RNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALI 275

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ-QIQANGF 179
           SG   NG     +EL  +MKS G+ P+      +L +CA  GA  +G ++    I+AN  
Sbjct: 276 SGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANA- 334

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            S+ ++   L++MYA+   L  A  +FD M  + ++ W A+I G    G  + A  +F  
Sbjct: 335 DSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYG 394

Query: 240 MLKSGIRPDGTAFVSVLSACS-----------HAGLTDKGLEY----FYGMKNKY----- 279
           + K G+  + T   +VL + +           HA     G  +      G+ + Y     
Sbjct: 395 LRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSC 454

Query: 280 ---GLQPGPE-------HYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGA 326
               ++   E         T M+  L +      A++L   ML   +EPD  V  +LL A
Sbjct: 455 LSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNA 514

Query: 327 CKIHKNVELAELAFGKVIKLEPMNTGY 353
           C      E  +     +IK + M+  +
Sbjct: 515 CASLSAYEQGKQVHAHLIKRQFMSDAF 541



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 161/347 (46%), Gaps = 3/347 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +NALISG VLN     A+ L  +M+  G+  N   +  +L  C   G   LG   H 
Sbjct: 268 VVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHG 327

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K   D D  +G  L+ MY K   +D   K+FD +  + LI WNA+ISG +  G    
Sbjct: 328 FMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDE 387

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
              ++  ++  G+  +  T   VL S A L A S   +V    +  GF  +  + N LI+
Sbjct: 388 AFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLID 447

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
            Y +C  L  A  +F+      +++ T++I       HGE A++LF EML+ G+ PD   
Sbjct: 448 SYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFV 507

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
             S+L+AC+     ++G +    +  +  +         +V    + G + +A EL  S 
Sbjct: 508 LSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAG-NALVYTYAKCGSIEDA-ELAFSS 565

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           L E     W A++G    H + + A   FG+++  E +N  +  + S
Sbjct: 566 LPERGVVSWSAMIGGLAQHGHGKRALELFGRMVD-EGINPNHITMTS 611



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 134/262 (51%), Gaps = 18/262 (6%)

Query: 83  SVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL 142
           S+ N L++ Y KC      R++FD++P+   ++W+++++ Y+ NGL    ++ +  M++ 
Sbjct: 38  SLRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAE 97

Query: 143 GVCPDAVTFVGVLSSC--AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
           GVC +      VL     A LGA     +V     A GFGS+ F+ NAL+ MY   G + 
Sbjct: 98  GVCCNEFALPVVLKCVPDAQLGA-----QVHAMAMATGFGSDVFVANALVAMYGGFGFMD 152

Query: 201 KARAIFD-GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC 259
            AR +FD     +  VSW  ++  Y  +     A+Q+F EM+ SGI+P    F  V++AC
Sbjct: 153 DARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNAC 212

Query: 260 SHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAV 319
           + +   D G +  + M  + G +        +VD+  + G+++ A  + E M   PD  V
Sbjct: 213 TGSRNIDAGRQ-VHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKM---PDSDV 268

Query: 320 --WGALLGACKI----HKNVEL 335
             W AL+  C +    H+ +EL
Sbjct: 269 VSWNALISGCVLNGHDHRAIEL 290


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/540 (38%), Positives = 310/540 (57%), Gaps = 35/540 (6%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +N +I GY  N    +A+ LF  MR   ++ +SV +  +L  C   G L  G   H 
Sbjct: 187 AVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHE 246

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKL--------------------------- 104
                G  +D  +   L+ MY  CG++D  RK+                           
Sbjct: 247 FVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKD 306

Query: 105 ----FDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160
               FDQ+ E+ L+ W+AMISGYA++      L+L+ EM      PD +T + V+S+C+H
Sbjct: 307 ARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSH 366

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           +GA +    +   +  +GFG    +NNALI+MYA+CGNL KAR +F+ MPRK V+SW+++
Sbjct: 367 VGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSM 426

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           I  + +HG+ + A++LF  M +  I P+G  F+ VL AC HAGL ++G + F  M N++G
Sbjct: 427 INAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHG 486

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           + P  EHY CMVDL  RA  L +A+ELIE+M   P+  +WG+L+ AC++H   EL E A 
Sbjct: 487 ISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAA 546

Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400
            ++++LEP + G  V+LSNIY++ +  + +  +R  M  + + K+   S +E+  +VH+F
Sbjct: 547 KRLLELEPDHDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRIEINNQVHMF 606

Query: 401 MVGDRNHHQTVEIYRMLDKLEN---LVQEHDGTKRSDQKNSEEHLNDTEV-HSEKLAIAF 456
           M+ DR H Q+ EIY  LD++ +   LV     T        EE   +  + HSEKLA+ +
Sbjct: 607 MMADRYHKQSDEIYEKLDEVVSKLKLVGYKPSTSGILIDLEEEDKKELVLWHSEKLAVCY 666

Query: 457 GIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           G+I+    + I ++KNLRIC DCH F+KLVSK+   + +VRD TRFHH   G CSC+DYW
Sbjct: 667 GLISRRNESCIRIVKNLRICEDCHSFMKLVSKVYQIEIVVRDRTRFHHCSGGICSCRDYW 726



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 105/376 (27%), Positives = 168/376 (44%), Gaps = 43/376 (11%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICVDPGYLWLGM 67
           TH +   N L+     +S   + + L+  +R      ++  +   LL           G+
Sbjct: 85  THFS---NQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVSAFNHGL 141

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
             H +  K G   D  +   L+ MY  C  +   R LFD++     + WN +I GY QNG
Sbjct: 142 EIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNG 201

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
                L L+ +M+S  + PD+V    VLS+C H G  S G  + + ++ NG+  +  L  
Sbjct: 202 HYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQT 261

Query: 188 ALINMYARCGNL-------------------------------KKARAIFDGMPRKTVVS 216
           ALINMYA CG +                               K AR IFD M  + +V 
Sbjct: 262 ALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVC 321

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
           W+A+I GY      + A++LFDEML+    PD    +SV+SACSH G   +   + +   
Sbjct: 322 WSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQA-NWIHTYV 380

Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAV--WGALLGACKIHKNVE 334
           ++ G          ++D+  + G L +A E+ E+M   P   V  W +++ A  +H N +
Sbjct: 381 DRSGFGRALSVNNALIDMYAKCGNLVKAREVFENM---PRKNVISWSSMINAFAMHGNAD 437

Query: 335 LAELAFGKV--IKLEP 348
            A   F ++  + +EP
Sbjct: 438 SAIKLFRRMKEVNIEP 453



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 136/259 (52%), Gaps = 6/259 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD+ I+     VC++A+ISGY  +    EA+ LF +M ++    + +TML ++  C   
Sbjct: 310 IFDQMIERD--LVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHV 367

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L      H    + G     SV N L+ MY KCG++   R++F+ +P K +I+W++MI
Sbjct: 368 GALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMI 427

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEV-EQQIQANGF 179
           + +A +G A   ++L+R MK + + P+ VTF+GVL +C H G    G ++    I  +G 
Sbjct: 428 NAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGI 487

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
                    ++++Y R   L+KA  + + MP    V+ W +++    +HG  E+      
Sbjct: 488 SPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAK 547

Query: 239 EMLKSGIRPDGTAFVSVLS 257
            +L+  + PD    + VLS
Sbjct: 548 RLLE--LEPDHDGALVVLS 564



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 104/210 (49%), Gaps = 4/210 (1%)

Query: 104 LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCP-DAVTFVGVLSSCAHLG 162
           +F Q+P       N ++   +++      + LY  ++++     D  +F  +L + + + 
Sbjct: 76  VFSQIPNPHTHFSNQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVS 135

Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIG 222
           A + GLE+       GF  +PF+   LI MYA C  +  AR +FD M     V+W  II 
Sbjct: 136 AFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIID 195

Query: 223 GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK-NKYGL 281
           GY  +GH + A++LF++M  S ++PD     +VLSAC HAG    G      +K N Y +
Sbjct: 196 GYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAI 255

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESM 311
               +  T ++++    G ++ A ++ + +
Sbjct: 256 DSHLQ--TALINMYANCGAMDLARKIYDGL 283


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/509 (41%), Positives = 296/509 (58%), Gaps = 38/509 (7%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +N+++S Y  N   ++A+ L  +M    ++ N  TM  LLP   +            
Sbjct: 186 VVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTN------------ 233

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                                    +V Y +++F ++ +K +I+WN MI+ Y  N +   
Sbjct: 234 ---------------------TTSDNVLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKE 272

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            + LY +M++ GV PD V+ V VL +   L A S+G  V +  +      N  L NALI+
Sbjct: 273 AVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLENALID 332

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+CG L+ ARA+F+ M  + VVSWT+II  YG  G G  AV +F EM  SG+ PD  A
Sbjct: 333 MYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIA 392

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           FVSVL+ACSHAGL D G  Y++ +  + G+ P  EH+ C+VDLLGRAG+++EA   I  M
Sbjct: 393 FVSVLAACSHAGLLDDG-RYYFNLMAECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQM 451

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            +EPD  VWG LL AC+++ N+ +  LA  K++ L P ++GYYVLLSNIY++A     + 
Sbjct: 452 PLEPDERVWGPLLSACRVYSNMNIGILAADKLLMLNPEHSGYYVLLSNIYAKAGRWADVA 511

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
            +R +M  + +KK PG S VEL   VH F+ GD +H Q+ +IY  LD L   ++E     
Sbjct: 512 AIRSIMERKGIKKLPGISNVELNDGVHTFLAGDHSHPQSKKIYEELDVLVGKMKELGYMP 571

Query: 432 RSDQKNSEEHLNDTE----VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
            +D    +    D E    VHSEKLA+AF IINT PGT I V KNLR+CGDCH+  KL+S
Sbjct: 572 ETDSALHDVEEEDKEYHLAVHSEKLAVAFAIINTKPGTPIRVTKNLRVCGDCHVAAKLIS 631

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KI +R+ I+RD  RFHHF+ G CSC DYW
Sbjct: 632 KIAEREIIIRDTHRFHHFQEGCCSCGDYW 660



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 148/326 (45%), Gaps = 37/326 (11%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE        V +N +I  YV N L  +A+ ++  M  QG   +  T  C+L      
Sbjct: 76  IFDEITDKN--VVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRS 133

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             LW+G+  H   +K GLDL+  VGN L+ MY KC S+   +++ D++P + +++WN+M+
Sbjct: 134 DSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMV 193

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           S YAQNG     LEL REM++L + P+  T   +L                         
Sbjct: 194 SVYAQNGRFNDALELCREMEALNLKPNDCTMASLL------------------------- 228

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
             P + N   +      N+   + +F  + +K+V+SW  +I  Y  +   + AV L+ +M
Sbjct: 229 --PAVTNTTSD------NVLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQM 280

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
             +G+ PD  + VSVL A         G    +    +  L P       ++D+  + G 
Sbjct: 281 EANGVEPDVVSIVSVLPAYGDLSALSLG-RRVHKFAERKKLLPNLLLENALIDMYAKCGC 339

Query: 301 LNEALELIESMLVEPDGAVWGALLGA 326
           L +A  +   M    D   W +++ A
Sbjct: 340 LRDARAVFNQMQFR-DVVSWTSIISA 364



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 96/179 (53%)

Query: 83  SVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL 142
           SVG  LM +Y  CG     R +FD++ +K ++ +N MI  Y  N L    L +Y+ M + 
Sbjct: 55  SVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQ 114

Query: 143 GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202
           G  PD  T+  VL + +   +  VGL++   +   G   N ++ N LI MY +C +LK+A
Sbjct: 115 GFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEA 174

Query: 203 RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261
           + + D +P + VVSW +++  Y  +G    A++L  EM    ++P+     S+L A ++
Sbjct: 175 QQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTN 233



 Score = 46.6 bits (109), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 2/144 (1%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           NP +   L+ +YA CG    AR IFD +  K VV +  +I  Y  +   + A+ ++  M 
Sbjct: 53  NPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMY 112

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301
             G  PD   +  VL A S +     GL+  +G   K GL         ++ + G+   L
Sbjct: 113 TQGFVPDMYTYPCVLKASSRSDSLWVGLQ-IHGAVLKIGLDLNLYVGNGLIAMYGKCKSL 171

Query: 302 NEALELIESMLVEPDGAVWGALLG 325
            EA ++++ +    D   W +++ 
Sbjct: 172 KEAQQVLDEIPCR-DVVSWNSMVS 194


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/442 (43%), Positives = 276/442 (62%), Gaps = 5/442 (1%)

Query: 80  LDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM 139
           +D S  N L+T + + G V   R LFD++PE+  ++W+AM++GY Q G     L ++ +M
Sbjct: 157 VDASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQM 216

Query: 140 KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNL 199
           ++ GV PD    VGVL++CA LGA   G  V   ++AN      FL  AL++MYA+CG +
Sbjct: 217 QAQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEV 276

Query: 200 KKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC 259
           +    +F+GM  K V++WT +I G  +HG G  ++ LF +M  SG++PD  AF+  L AC
Sbjct: 277 QLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCAC 336

Query: 260 SHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAV 319
           +H GL DKG E F  M N YG++P  EHY CMVDLL R G L+EA +++E M ++PD  +
Sbjct: 337 THTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALI 396

Query: 320 WGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379
           WGAL+  C+ HKNVELAE      I+LEP  +G YVLL NIYS +        +R +MRE
Sbjct: 397 WGALMAGCRFHKNVELAEYVIKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLMRE 456

Query: 380 RRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQK--- 436
           + ++K PG S VE+KG +H F+VGD +H +  +I     ++++ ++  +G     ++   
Sbjct: 457 KGVEKTPGCSNVEIKGVIHQFIVGDLSHPRIKDILTKWYEIDSRIRLEEGYVPDKKEVLL 516

Query: 437 --NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQF 494
               EE  +    HSEKLAIAF +I+T     I ++KNLR+C DCH   KL+SK+  R+ 
Sbjct: 517 DIEEEEMESALSRHSEKLAIAFALISTEDYMPIRIVKNLRVCQDCHHVTKLISKVYGREI 576

Query: 495 IVRDATRFHHFKSGFCSCKDYW 516
           IVRD TRFH FK G CSCKDYW
Sbjct: 577 IVRDRTRFHLFKDGTCSCKDYW 598



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 146/289 (50%), Gaps = 10/289 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +     V ++A+++GYV      EA+ +F +M+ QGV  +   ++ +L  C   
Sbjct: 181 LFDEMPERN--AVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQL 238

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  G   H       + +   +G  L+ MY KCG V  G ++F+ + +K ++ W  MI
Sbjct: 239 GALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMI 298

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            G A +G  +  L L+ +M+S GV PD + F+G L +C H G    G E+   +  N +G
Sbjct: 299 KGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSM-VNNYG 357

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMPRKT-VVSWTAIIGGYGIHGHGEVAVQLF 237
             P + +   ++++ AR G L +AR + + MP K   + W A++ G   H + E+A  + 
Sbjct: 358 IKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVI 417

Query: 238 DEMLKSGIRPDGT-AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
              ++  + PD + A+V + +  S +G      E    M+ K G++  P
Sbjct: 418 KHWIE--LEPDKSGAYVLLGNIYSASGRHASAREIRNLMREK-GVEKTP 463



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 108/250 (43%), Gaps = 38/250 (15%)

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH----LGAHSVGLEVEQ 172
           +A+I  +A +G     L LY  +   G+ P   T   +L S A      GA  + L V  
Sbjct: 57  DALIRAHASSGRPQAALPLYAHLIRAGLFPTPHTLPSLLKSLALSPAVPGARRLALAVHA 116

Query: 173 QIQANGFGSNPFLNNALINM--------------------------------YARCGNLK 200
                G      +NNALI +                                +AR G + 
Sbjct: 117 HAVRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAHARAGRVA 176

Query: 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
            AR++FD MP +  VSW+A++ GY   G G  A+ +F +M   G+RPD T  V VL+AC+
Sbjct: 177 DARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACA 236

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320
             G  ++G ++ +G      ++      T +VD+  + G++   +E+ E M  + +   W
Sbjct: 237 QLGALEQG-KWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGM-KDKNVLAW 294

Query: 321 GALLGACKIH 330
             ++    +H
Sbjct: 295 TTMIKGLAMH 304


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/544 (36%), Positives = 328/544 (60%), Gaps = 43/544 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++I+G+V      +A+ LF KM  + V+ + VTM+ +L  C     L  G      
Sbjct: 198 VSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSY 257

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFD-------------------------- 106
             +  ++++ ++ N ++ MY KCGS++  ++LFD                          
Sbjct: 258 IEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAA 317

Query: 107 -----QVPEKGLITWNAMISGYAQNGLATHVLELYREMK-SLGVCPDAVTFVGVLSSCAH 160
                 +P+K ++ WNA+IS Y QNG     L ++ E++    +  + +T V  LS+CA 
Sbjct: 318 REVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQ 377

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           +GA  +G  +   I+ +G   N  + +ALI+MY++CG+L+K+R +F+ + ++ V  W+A+
Sbjct: 378 VGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAM 437

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           IGG  +HG G  AV +F +M ++ ++P+G  F +V  ACSH GL D+    F+ M++ YG
Sbjct: 438 IGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYG 497

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           + P  +HY C+VD+LGR+G L +A++ IE+M + P  +VWGALLGACKIH N+ LAE+A 
Sbjct: 498 IVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMAC 557

Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400
            ++++LEP N G +VLLSNIY++    + +  +R  MR   LKK+PG S +E+ G +H F
Sbjct: 558 TRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEF 617

Query: 401 MVGDRNHHQTVEIY----RMLDKLENLVQEHDGTKR----SDQKNSEEHLNDTEVHSEKL 452
           + GD  H  + ++Y     +++KL++   E + ++      +++  E+ LN   +HSEKL
Sbjct: 618 LSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLN---LHSEKL 674

Query: 453 AIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSC 512
           AI +G+I+T     I V+KNLR+CGDCH   KL+S++ DR+ IVRD  RFHHF++G CSC
Sbjct: 675 AICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSC 734

Query: 513 KDYW 516
            D+W
Sbjct: 735 NDFW 738



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/363 (28%), Positives = 170/363 (46%), Gaps = 37/363 (10%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVD 59
           VFDE  K    +  +N LI  Y        ++  F  M  E     N  T   L+    +
Sbjct: 86  VFDEIPKPN--SFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAE 143

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              L LG   H + VK  +  D  V N L+  Y  CG +D   K+F  + EK +++WN+M
Sbjct: 144 VSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSM 203

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I+G+ Q G     LEL+++M+S  V    VT VGVLS+CA +     G +V   I+ N  
Sbjct: 204 INGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRV 263

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDG------------------------------- 208
             N  L NA+++MY +CG+++ A+ +FD                                
Sbjct: 264 NVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNS 323

Query: 209 MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM-LKSGIRPDGTAFVSVLSACSHAGLTDK 267
           MP+K +V+W A+I  Y  +G    A+ +F E+ L+  ++ +    VS LSAC+  G  + 
Sbjct: 324 MPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALEL 383

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           G  + +    K+G++      + ++ +  + G L ++ E+  S + + D  VW A++G  
Sbjct: 384 G-RWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNS-VEKRDVFVWSAMIGGL 441

Query: 328 KIH 330
            +H
Sbjct: 442 AMH 444



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 119/243 (48%), Gaps = 5/243 (2%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC-PDAVTFVGV 154
            S++Y RK+FD++P+     WN +I  YA        +  + +M S   C P+  TF  +
Sbjct: 78  ASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFL 137

Query: 155 LSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTV 214
           + + A + + S+G  +      +  GS+ F+ N+LI+ Y  CG+L  A  +F  +  K V
Sbjct: 138 IKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDV 197

Query: 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEY-FY 273
           VSW ++I G+   G  + A++LF +M    ++      V VLSAC+     + G +   Y
Sbjct: 198 VSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSY 257

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNV 333
             +N+  +     +   M+D+  + G + +A  L ++M  E D   W  +L    I ++ 
Sbjct: 258 IEENRVNVNLTLAN--AMLDMYTKCGSIEDAKRLFDAM-EEKDNVTWTTMLDGYAISEDY 314

Query: 334 ELA 336
           E A
Sbjct: 315 EAA 317


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/540 (38%), Positives = 306/540 (56%), Gaps = 37/540 (6%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V YNA+ISGYV      EA+ +  +M   G+E++  T   ++  C   G L LG   H  
Sbjct: 252 VAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAY 311

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGY--------- 123
            ++   D  F   N L+++Y KCG  D  R +F+++P K L++WNA++SGY         
Sbjct: 312 VLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEA 370

Query: 124 ----------------------AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL 161
                                 A+NG     L+L+  MK  G  P    F G + SCA L
Sbjct: 371 KLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVL 430

Query: 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
           GA+  G +   Q+   GF S+    NALI MYA+CG +++AR +F  MP    VSW A+I
Sbjct: 431 GAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALI 490

Query: 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281
              G HGHG  AV +++EMLK GIRPD    ++VL+ACSHAGL D+G +YF  M+  Y +
Sbjct: 491 AALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRI 550

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG 341
            PG +HY  ++DLL R+G+ ++A  +IES+  +P   +W ALL  C++H N+EL  +A  
Sbjct: 551 PPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAAD 610

Query: 342 KVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFM 401
           K+  L P + G Y+LLSN+++     + + RVR +MR+R +KK+   S++E++ +VH F+
Sbjct: 611 KLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFL 670

Query: 402 VGDRNHHQTVEIYRMLDKLENLVQE----HDGTKRSDQKNSEEHLNDT-EVHSEKLAIAF 456
           V D +H +   +Y  L  L   ++      D +       S+ H  D    HSEK+A+AF
Sbjct: 671 VDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAF 730

Query: 457 GIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           G++   PGT I + KNLR CGDCH F + +S +V R  I+RD  RFHHF++G CSC ++W
Sbjct: 731 GLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 171/400 (42%), Gaps = 75/400 (18%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVT---MLCLLPIC 57
           VF+++      TV YNA+I+G+  N+    A++LF KM+ +G + ++ T   +L  L + 
Sbjct: 102 VFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALV 161

Query: 58  VDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS----VDYGRKLFDQVPEKG- 112
            D     +    H   +K G     SV N L+++Y KC S    +   RK+FD++ EK  
Sbjct: 162 ADDEKQCVQF--HAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDE 219

Query: 113 -------------------------------LITWNAMISGYAQNGLATHVLELYREMKS 141
                                          L+ +NAMISGY   G     LE+ R M S
Sbjct: 220 RSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVS 279

Query: 142 LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKK 201
            G+  D  T+  V+ +CA  G   +G +V   +      S  F +N+L+++Y +CG   +
Sbjct: 280 SGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHF-DNSLVSLYYKCGKFDE 338

Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGH-------------------------------G 230
           ARAIF+ MP K +VSW A++ GY   GH                               G
Sbjct: 339 ARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFG 398

Query: 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC 290
           E  ++LF  M + G  P   AF   + +C+  G    G +Y +    K G          
Sbjct: 399 EEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQY-HAQLLKIGFDSSLSAGNA 457

Query: 291 MVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           ++ +  + G + EA ++  +M    D   W AL+ A   H
Sbjct: 458 LITMYAKCGVVEEARQVFRTMPC-LDSVSWNALIAALGQH 496



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 89/389 (22%), Positives = 158/389 (40%), Gaps = 79/389 (20%)

Query: 63  LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE------------ 110
           L L    H   + FG      + N L+ +Y K   ++Y R+LFD++ E            
Sbjct: 30  LQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSG 89

Query: 111 ---------------------KGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
                                +  + +NAMI+G++ N      + L+ +MK  G  PD  
Sbjct: 90  YCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNF 149

Query: 150 TFVGVLSSCAHLGAHSVG-LEVEQQIQANGFGSNPFLNNALINMYARCGN----LKKARA 204
           TF  VL+  A +       ++       +G G    ++NAL+++Y++C +    L  AR 
Sbjct: 150 TFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARK 209

Query: 205 IFDGMPRKTVVSWT--------------------------------AIIGGYGIHGHGEV 232
           +FD +  K   SWT                                A+I GY   G  + 
Sbjct: 210 VFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQE 269

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHY-TC 290
           A+++   M+ SGI  D   + SV+ AC+ AGL   G + + Y ++     +    H+   
Sbjct: 270 ALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRR----EDFSFHFDNS 325

Query: 291 MVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN 350
           +V L  + G+ +EA  + E M  + D   W ALL       ++  A+L F ++ +   ++
Sbjct: 326 LVSLYYKCGKFDEARAIFEKMPAK-DLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILS 384

Query: 351 TGYYVLLSNIYSEARNLDGIMRVRMMMRE 379
             + +++S +       +G+     M RE
Sbjct: 385 --WMIMISGLAENGFGEEGLKLFSCMKRE 411


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/537 (40%), Positives = 308/537 (57%), Gaps = 32/537 (5%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            + ++A+I+ Y  +    +A+ LF  M   G+  + +T+  LL  C++   L      H 
Sbjct: 325 VISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHA 384

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL--- 128
                G+  +  V N L+  Y    ++D    LFD +  +  ++W+ M+ G+A+ G    
Sbjct: 385 QASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMN 444

Query: 129 -------------------------ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163
                                    A   L L+ +M+  GV PD V  V V+ +CA LGA
Sbjct: 445 CFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGA 504

Query: 164 HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGG 223
                 ++  IQ   F  +  L  A+I+M+A+CG ++ AR IFD M  K V+SW+A+I  
Sbjct: 505 MHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAA 564

Query: 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP 283
           YG HG G  A+ LF  ML+SGI P+    VS+L ACSHAGL ++GL +F  M   Y ++ 
Sbjct: 565 YGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRA 624

Query: 284 GPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
             +HYTC+VDLLGRAG+L+EAL+LIESM VE D  +WGA LGAC+ HK+V LAE A   +
Sbjct: 625 DVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSL 684

Query: 344 IKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVG 403
           ++L+P N G+Y+LLSNIY+ A   + + + R +M +RRLKK PG++++E+  + H F VG
Sbjct: 685 LELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVG 744

Query: 404 DRNHHQTVEIYRML----DKLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGII 459
           D  H ++ EIY ML    +KLE +    D        + E  +     HSEKLAIAFG+I
Sbjct: 745 DTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLI 804

Query: 460 NTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            T   T I ++KNLR+CGDCH F KLVS I  R  IVRDA RFHHFK G CSC DYW
Sbjct: 805 ATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 861



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 156/318 (49%), Gaps = 31/318 (9%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQ---GVEINSVTMLCLLPICVDPGYLWLGMC 68
           +V ++ ++ G+   + V + ++ FG  RE    G   ++ T+  ++  C D   L +   
Sbjct: 144 SVSWSVMVGGF---AKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMA-- 198

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
                              L+ MYVKC  ++  R LFD++ E+ L+TW  MI GYA+ G 
Sbjct: 199 -------------------LVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGK 239

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
           A   L L+ +M+  GV PD V  V V+ +CA LGA      ++  IQ   F  +  L  A
Sbjct: 240 ANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTA 299

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           +I+MYA+CG ++ AR IFD M  K V+SW+A+I  YG HG G  A+ LF  ML SG+ PD
Sbjct: 300 MIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPD 359

Query: 249 GTAFVSVLSACSHA-GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
                S+L AC +   LT   +   +   + +G+         +V        L++A  L
Sbjct: 360 KITLASLLYACINCRNLTQ--VRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGL 417

Query: 308 IESMLVEPDGAVWGALLG 325
            + M V  D   W  ++G
Sbjct: 418 FDGMCVR-DSVSWSVMVG 434



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 163/349 (46%), Gaps = 36/349 (10%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  +I GY      +E++ LF KMRE+GV  + V M+ ++  C   G +         
Sbjct: 225 VTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDY 284

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             +    LD  +G  ++ MY KCG V+  R++FD++ EK +I+W+AMI+ Y  +G     
Sbjct: 285 IQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKA 344

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+L+R M S G+ PD +T   +L +C +    +   +V  Q   +G   N  + N L++ 
Sbjct: 345 LDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHF 404

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYG--------------------------- 225
           Y+    L  A  +FDGM  +  VSW+ ++GG+                            
Sbjct: 405 YSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTL 464

Query: 226 -IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL---EYFYGMKNKYGL 281
              G+   ++ LFD+M + G+ PD  A V+V+ AC+  G   K     +Y    K +  +
Sbjct: 465 PFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDV 524

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
             G    T M+D+  + G +  A E+ + M  E +   W A++ A   H
Sbjct: 525 ILG----TAMIDMHAKCGCVESAREIFDRM-EEKNVISWSAMIAAYGYH 568



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 119/257 (46%), Gaps = 29/257 (11%)

Query: 77  GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY 136
           G+  +  V N L+  Y    ++D    LFD +  +  ++W+ M+ G+A+ G   +    +
Sbjct: 108 GMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTF 167

Query: 137 REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196
           RE+   G  PD  T   V+ +C  L                       L  AL++MY +C
Sbjct: 168 RELIRCGARPDNYTLPFVIRACRDLKN---------------------LQMALVDMYVKC 206

Query: 197 GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL 256
             ++ AR +FD M  + +V+WT +IGGY   G    ++ LF++M + G+ PD  A V+V+
Sbjct: 207 REIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVV 266

Query: 257 SACSHAGLTDKGL---EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
            AC+  G   K     +Y    K +  +  G    T M+D+  + G +  A E+ + M  
Sbjct: 267 FACAKLGAMHKARIIDDYIQRKKFQLDVILG----TAMIDMYAKCGCVESAREIFDRM-E 321

Query: 314 EPDGAVWGALLGACKIH 330
           E +   W A++ A   H
Sbjct: 322 EKNVISWSAMIAAYGYH 338



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 78/189 (41%), Gaps = 15/189 (7%)

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
           ++  L +C +L   +   +V  Q   +G   N  + N LI  Y+    L  A  +FDGM 
Sbjct: 84  YISALVNCRNL---TQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMC 140

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS-----HAGLT 265
            +  VSW+ ++GG+   G        F E+++ G RPD      V+ AC         L 
Sbjct: 141 VRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMALV 200

Query: 266 DKGLEYFYGMKNKYGLQPGPEH----YTCMVDLLGRAGQLNEALELIESMLVE---PDGA 318
           D  ++       ++      E     +T M+      G+ NE+L L E M  E   PD  
Sbjct: 201 DMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKV 260

Query: 319 VWGALLGAC 327
               ++ AC
Sbjct: 261 AMVTVVFAC 269


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/538 (39%), Positives = 314/538 (58%), Gaps = 44/538 (8%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMRE--QGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
           V +N ++SGY       E+  LF +M +  + V  NSVT++ +L  C     L  G C +
Sbjct: 203 VTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIY 262

Query: 71  CICVKFGL-DLDFSVGNCLMTMYVKCGS-------------------------------V 98
              +K G+ + +  + N L+ M+  CG                                +
Sbjct: 263 NKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRI 322

Query: 99  DYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC 158
           D  RK FDQ+PE+  ++W AMI GY +      VL L+R+M+   V PD  T V +L++C
Sbjct: 323 DLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTAC 382

Query: 159 AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWT 218
           AHLGA  +G   +  I  N   ++ F+ NALI+MY +CGN++KA+ IF+ M +K   +WT
Sbjct: 383 AHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWT 442

Query: 219 AIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278
           A+I G   +GHGE A+ +F  ML++ + PD   ++ V+ AC+H GL  KG  +F  M  +
Sbjct: 443 AMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQ 502

Query: 279 YGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAEL 338
           +G++P   HY CMVDLLGRAG L EALE+I +M V+P+  VWG+LLGAC++HKNV+LAE+
Sbjct: 503 HGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEM 562

Query: 339 AFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVH 398
           A  ++++LEP N   YVLL NIY+  +    +  VR MM ER +KK PG S +E+ G V+
Sbjct: 563 AANEILELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVY 622

Query: 399 LFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKN-------SEEHLNDTEVHSEK 451
            F+ GD++H Q+ EIY    KLEN+ Q+      S   +        E+      +HSEK
Sbjct: 623 EFVAGDKSHPQSKEIYA---KLENMKQDLSNAGYSPDTSEVFLDVGEEDKETALYMHSEK 679

Query: 452 LAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGF 509
           LAIA+ +I++  G  I ++KNLR+C DCH    +VSK+ +R+ IVRD TRFHHF+ G 
Sbjct: 680 LAIAYALISSGKGVTIRIVKNLRMCVDCHHMAMVVSKVYNRELIVRDKTRFHHFRHGL 737



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 161/360 (44%), Gaps = 41/360 (11%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  + +     +N +I GY   +     VSL+  M    ++ +  T   LL      
Sbjct: 91  VFDEIPQPS--VFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKD 148

Query: 61  GYLWLG--MCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
             L  G  +  H +   F LD +  V    + ++  CG V+Y RK+FD      ++TWN 
Sbjct: 149 MALKYGKVLLNHAVIHGF-LDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNV 207

Query: 119 MISGYAQNGLATHVLELYREMKSLGVC--PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
           ++SGY +         L+ EM+    C  P++VT V +LS+C+ L     G  +  +   
Sbjct: 208 VLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIK 267

Query: 177 NGF-GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQ 235
            G    N  L NALI+M+A CG +  AR +FD M  + V+SWT+I+ G+      ++A +
Sbjct: 268 EGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARK 327

Query: 236 LFDEMLK-------------------------------SGIRPDGTAFVSVLSACSHAGL 264
            FD+M +                               S ++PD    VS+L+AC+H G 
Sbjct: 328 YFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGA 387

Query: 265 TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
            + G E+     +K  ++        ++D+  + G + +A ++   M  + D   W A++
Sbjct: 388 LELG-EWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEM-QKKDKFTWTAMI 445



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 117/253 (46%), Gaps = 8/253 (3%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
           G V Y RK+FD++P+  +  WN MI GY++   +   + LY+ M    + PD  TF  +L
Sbjct: 83  GDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLL 142

Query: 156 SSCAHLGAHSVGLEVEQQIQANGF-GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTV 214
                  A   G  +      +GF  SN F+    I++++ CG +  AR IFD      V
Sbjct: 143 KGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEV 202

Query: 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKS--GIRPDGTAFVSVLSACSHAGLTD-KGLEY 271
           V+W  ++ GY      E + +LF EM K    + P+    V +LSACS   L D  G + 
Sbjct: 203 VTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSK--LKDLVGGKC 260

Query: 272 FYGMKNKYGL-QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
            Y    K G+ +P       ++D+    G+++ A  + + M    D   W +++      
Sbjct: 261 IYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTR-DVISWTSIVTGFANT 319

Query: 331 KNVELAELAFGKV 343
             ++LA   F ++
Sbjct: 320 CRIDLARKYFDQM 332


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/508 (38%), Positives = 303/508 (59%), Gaps = 11/508 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +I+G   N L  E + +  +M    ++ +S T+  +LP+  +   +  G   H  
Sbjct: 205 VSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGC 264

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ GLD D  V + L+ MY KC  V    ++F  + E+  I+WN++I+G  QNGL    
Sbjct: 265 SIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEG 324

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L  +R+M    + P + +F  ++ +CAHL    +G ++   I  NGF  N F+ ++L++M
Sbjct: 325 LRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDM 384

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CGN++ A+ IFD M  + +VSWTA+I G  +HG    A++LF++M   GI+      
Sbjct: 385 YAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIK------ 438

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            +VL+ACSH GL D+  +YF  M   +G+ PG EHY  + DLLGRAG+L EA + I  M 
Sbjct: 439 -AVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMH 497

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           + P G++W  LL AC++HKN+++AE    ++++++P NTG Y+LL+NIYS AR      +
Sbjct: 498 IGPTGSIWATLLSACRVHKNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAK 557

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH----D 428
            R  MR   ++K P  S++E+K +V+ FM GD +H    +I   ++ L  L+++     D
Sbjct: 558 WRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPD 617

Query: 429 GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
            ++       E+       HSE+LAI FGIINT  G  I V KNLR+C DCH   K +SK
Sbjct: 618 TSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISK 677

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           IV R+ +VRD +RFHHFK+G CSC DYW
Sbjct: 678 IVGREIVVRDNSRFHHFKNGTCSCGDYW 705



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 156/351 (44%), Gaps = 34/351 (9%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            + + ++I  Y  + L  +++  F  M   G+  +      +L  C     L LG   H 
Sbjct: 71  ALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHG 130

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCG--------------------------------SVD 99
             ++ GLD D   GN LM MY K                                  S D
Sbjct: 131 YIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSED 190

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
             RK+F+ +PEK L++WN +I+G A+NGL    L + REM    + PD+ T   VL   A
Sbjct: 191 SVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIA 250

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
                S G E+       G  ++ ++ ++LI+MYA+C  +  +  +F  +  +  +SW +
Sbjct: 251 ENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNS 310

Query: 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279
           II G   +G  +  ++ F +ML + I+P   +F S++ AC+H      G +  +G   + 
Sbjct: 311 IIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQ-LHGYITRN 369

Query: 280 GLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           G        + +VD+  + G +  A ++ + M +  D   W A++  C +H
Sbjct: 370 GFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMGCALH 419



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 111/257 (43%), Gaps = 34/257 (13%)

Query: 103 KLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162
           +LF+ +     + W ++I  Y  +GL    L  +  M + G+ PD   F  VL SCA L 
Sbjct: 61  RLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120

Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA-------------------- 202
             ++G  +   I   G   + +  NAL+NMY++   L+++                    
Sbjct: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180

Query: 203 ------------RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
                       R IF+ MP K +VSW  II G   +G  E  +++  EM  + ++PD  
Sbjct: 181 VRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSF 240

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
              SVL   +      +G E  +G   + GL       + ++D+  +  ++ ++  +  +
Sbjct: 241 TLSSVLPLIAENVDISRGKE-IHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVF-T 298

Query: 311 MLVEPDGAVWGALLGAC 327
           +L E DG  W +++  C
Sbjct: 299 LLTERDGISWNSIIAGC 315


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/514 (40%), Positives = 310/514 (60%), Gaps = 15/514 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V +N++I+ Y+ N    EA+ LF KM +  V+ +SVT + LL +    G L LG   HC
Sbjct: 441 SVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHC 499

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              K G + +  V N L+ MY KCG +    K+F+ +  + +ITWN +I+    +     
Sbjct: 500 DLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNL 559

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L +   M++ GV PD  T + +L  C+ L A   G E+   I   G  S+  + N LI 
Sbjct: 560 GLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIE 619

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY++CG+L+ +  +F  M  K VV+WTA+I   G++G G+ AV+ F EM  +GI PD  A
Sbjct: 620 MYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVA 679

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           FV+++ ACSH+GL ++GL YF+ MK  Y ++P  EHY C+VDLL R+  L++A + I SM
Sbjct: 680 FVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSM 739

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            ++PD ++WGALL AC++  + E+A+    ++I+L P +TGYYVL+SN+Y+     D + 
Sbjct: 740 PLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQVR 799

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
            +R  ++ R LKKDPG S++E++ +V++F  G +   Q  E+ ++L  L  L+      K
Sbjct: 800 SIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEEVNKLLGMLAGLM-----AK 854

Query: 432 RSDQKNSEEHLNDTEV---------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLF 482
                N +  L+D +          HSE+LAIAFG++NT PGT + VMKNLR+C DCH  
Sbjct: 855 EGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTV 914

Query: 483 IKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            K +SKI  R+ +VRDA RFH FK G CSC DYW
Sbjct: 915 TKYISKIXQRELLVRDANRFHVFKDGACSCGDYW 948



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 102/315 (32%), Positives = 169/315 (53%), Gaps = 4/315 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N+LISGY  N   +EA+ ++ + R  GV  +S TM  +L  C   G +  G   H +
Sbjct: 241 VSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGL 300

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K G+  D  V N L++MY K   +  GR++FD++  +  ++WN MI GY+Q GL    
Sbjct: 301 IEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEES 360

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           ++L+ EM +    PD +T   +L +C HLG    G  V   +  +G+  +   +N LINM
Sbjct: 361 IKLFMEMVN-QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINM 419

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CGNL  ++ +F GM  K  VSW ++I  Y  +G  + A++LF +M+K+ ++PD   +
Sbjct: 420 YAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTY 478

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           V +LS  +  G    G E    +  K G          +VD+  + G++ ++L++ E+M 
Sbjct: 479 VMLLSMSTQLGDLXLGKELHCDLA-KMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMK 537

Query: 313 VEPDGAVWGALLGAC 327
              D   W  ++ +C
Sbjct: 538 AR-DIITWNTIIASC 551



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 171/352 (48%), Gaps = 18/352 (5%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N++I     N L SEA+SL+ + +   ++ ++ T   ++  C       +    H   +
Sbjct: 142 WNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVL 201

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             G   D  +GN L+ MY +   +D  RK+F+++P + +++WN++ISGY  NG     LE
Sbjct: 202 XMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALE 261

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           +Y   ++LGV PD+ T   VL +C  LG+   G  +   I+  G   +  +NN L++MY 
Sbjct: 262 IYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYC 321

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +   L   R IFD M  +  VSW  +I GY   G  E +++LF EM+    +PD     S
Sbjct: 322 KFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITS 380

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           +L AC H G  + G +Y +      G +        ++++  + G L  + E+   M  +
Sbjct: 381 ILQACGHLGDLEFG-KYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCK 439

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKL--------EPMNTGYYVLLS 358
            D   W +++       NV +   +F + +KL        +P +  Y +LLS
Sbjct: 440 -DSVSWNSMI-------NVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLS 483



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 137/298 (45%), Gaps = 45/298 (15%)

Query: 109 PEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGL 168
           P   +  WN++I     NGL +  L LY E + + + PD  TF  V+++CA L    +  
Sbjct: 135 PSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 194

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
            +  ++   GFGS+ ++ NALI+MY R  +L KAR +F+ MP + VVSW ++I GY  +G
Sbjct: 195 SIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 254

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP----- 283
           +   A++++      G+ PD     SVL AC   G  ++G +  +G+  K G++      
Sbjct: 255 YWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEG-DIIHGLIEKIGIKKDVIVN 313

Query: 284 --------------------------GPEHYTCMVDLLGRAGQLNEALELIESML--VEP 315
                                         +  M+    + G   E+++L   M+   +P
Sbjct: 314 NGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKP 373

Query: 316 DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV------LLSNIYSEARNL 367
           D     ++L AC       L +L FGK +    + +GY        +L N+Y++  NL
Sbjct: 374 DLLTITSILQACG-----HLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNL 426


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/546 (38%), Positives = 304/546 (55%), Gaps = 45/546 (8%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +NA+I+GY  N L ++A+ LF +M  E  +  +  T+  +L  C + G + +G   H 
Sbjct: 156 VSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHA 215

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL------------------ 113
             ++  +  +  V N L++ Y K GSV+  R++ DQ  E  L                  
Sbjct: 216 YILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDM 275

Query: 114 ---------------ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC 158
                          + W AMI GY QNG     ++L+R M + G  P++ T   VLS C
Sbjct: 276 ESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVC 335

Query: 159 AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM-PRKTVVSW 217
           A L     G ++  +   +    +  ++NA+I MYAR G+   AR +FD +  RK  ++W
Sbjct: 336 ASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITW 395

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
           T++I     HG GE AV LF+EML++G+ PD   +V VLSACSHAG  ++G  Y+  +KN
Sbjct: 396 TSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKN 455

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
           ++ + P   HY CMVDLL RAG  +EA E I  M VEPD   WG+LL AC++HKN ELAE
Sbjct: 456 EHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAE 515

Query: 338 LAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRV 397
           LA  K++ ++P N+G Y  ++N+YS         R+    +E+ ++K+ G+S+  ++ ++
Sbjct: 516 LAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKI 575

Query: 398 HLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEV-------HSE 450
           H+F   D  H Q   +Y M  +   + +E  G        S  H  D E+       HSE
Sbjct: 576 HVFGADDVVHPQRDAVYAMAAR---MWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSE 632

Query: 451 KLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFC 510
           KLAIAFG+I+T   T + VMKNLR+C DCH  IK +SK+ DR+ IVRDATRFHHF+ G C
Sbjct: 633 KLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLC 692

Query: 511 SCKDYW 516
           SCKDYW
Sbjct: 693 SCKDYW 698



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 110/414 (26%), Positives = 160/414 (38%), Gaps = 99/414 (23%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  ++ G        EA+     M   G      T+  +L  C       +G   H  
Sbjct: 24  VSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSF 83

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGS-------------------------------VDYG 101
            VK GL     V N ++ MY KCG                                +D  
Sbjct: 84  VVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLA 143

Query: 102 RKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY-REMKSLGVCPDAVTFVGVLSSCAH 160
             LF+ +P++ +++WNAMI+GY QNGL    L+L+ R +    + PD  T   VLS+CA+
Sbjct: 144 ESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACAN 203

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG------------ 208
           LG   +G +V   I       N  + NALI+ YA+ G+++ AR I D             
Sbjct: 204 LGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFT 263

Query: 209 ---------------------MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
                                M  + VV+WTA+I GY  +G  + A+ LF  M+  G  P
Sbjct: 264 ALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEP 323

Query: 248 DGTAFVSVLSACSHAGLTDKG-----------LEYFYGMKN-------KYGLQPGPEH-- 287
           +     +VLS C+     D G           LE    + N       + G  P      
Sbjct: 324 NSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMF 383

Query: 288 -----------YTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGAC 327
                      +T M+  L + GQ  EA+ L E ML   VEPD   +  +L AC
Sbjct: 384 DQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSAC 437



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 137/305 (44%), Gaps = 47/305 (15%)

Query: 91  MYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVT 150
           M+ K G +   R +F ++PE+  ++W  M+ G  + G     ++   +M + G  P   T
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGN------------ 198
              VLSSCA   A +VG +V   +   G GS   + N+++NMY +CG+            
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 120

Query: 199 -------------------LKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
                              +  A ++F+ MP +++VSW A+I GY  +G    A++LF  
Sbjct: 121 VRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSR 180

Query: 240 ML-KSGIRPDGTAFVSVLSACSHAGLTDKGLE---YFYGMKNKYGLQPGPEHYTCMVDLL 295
           ML +S + PD     SVLSAC++ G    G +   Y    +  Y  Q        ++   
Sbjct: 181 MLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQV----TNALISTY 236

Query: 296 GRAGQLNEALELI-ESMLVEPDGAVWGALL-GACKIHKNVELAELAFG-----KVIKLEP 348
            ++G +  A  ++ +SM  + +   + ALL G  KI  ++E A   FG      V+    
Sbjct: 237 AKSGSVENARRIMDQSMETDLNVISFTALLEGYVKI-GDMESAREMFGVMNNRDVVAWTA 295

Query: 349 MNTGY 353
           M  GY
Sbjct: 296 MIVGY 300


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/493 (41%), Positives = 296/493 (60%), Gaps = 13/493 (2%)

Query: 30  EAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLM 89
           EA+     MR  GV  N+ T   +L  C  PG L      H   VK GLD D  V + L+
Sbjct: 154 EALRFLVAMRRDGVAPNAYTFSSVLGACTTPGML---TAVHASTVKAGLDSDVFVRSSLI 210

Query: 90  TMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
             YVK G +D GR++FD++  + L+ WN++I+G+AQ+G     +EL+  MK  G   +  
Sbjct: 211 DAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQG 270

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQAN--GFGSNPFLNNALINMYARCGNLKKARAIFD 207
           T   VL +C  +    V LE  +Q+ A+   +  +  L+NAL++MY +CG+L+ A A+F 
Sbjct: 271 TLTSVLRACTGM----VMLEAGRQVHAHVLKYDRDLILHNALLDMYCKCGSLEDADALFH 326

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            MP++ V+SW+ ++ G   +G    A+++FD M   G+ P+    V VL ACSHAGL + 
Sbjct: 327 RMPQRDVISWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVED 386

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           G  YF  MK  +G+QP  EH+ CMVDLLGRAG+L+EA+E I  M +EPD  +W  LLGAC
Sbjct: 387 GWHYFRSMKRLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGAC 446

Query: 328 KIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPG 387
           ++HKN  LA  A  +++KLEP + G  VLLSN Y++ R      +    MR+R ++K+PG
Sbjct: 447 RMHKNASLAAYAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKPWKAMRDRGMRKEPG 506

Query: 388 YSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD---QKNSEEHLND 444
            S++EL+ RVH+F+ GD +H  +  I + L++L   ++      +++   Q    E   D
Sbjct: 507 RSWIELEKRVHVFIAGDLSHPCSDTIIQELNRLIGRIKSLGYVPQTEFVLQDLPTEQKED 566

Query: 445 -TEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFH 503
             + HSEK+AI FG ++   G  I +MKNLRICGDCH F KLVSK   R  ++RD  RFH
Sbjct: 567 LLKYHSEKMAIVFGTMHAVDGKPIRIMKNLRICGDCHAFAKLVSKSEGRVIVIRDPVRFH 626

Query: 504 HFKSGFCSCKDYW 516
           HF+ G CSC DYW
Sbjct: 627 HFQDGACSCGDYW 639



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 122/254 (48%), Gaps = 11/254 (4%)

Query: 84  VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ-NGLATHVLELYREMKSL 142
           V N L +MY K G +D   ++FD +P + ++TW  +++  A  +G     L     M+  
Sbjct: 106 VSNSLASMYAKFGLLDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRD 165

Query: 143 GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202
           GV P+A TF  VL +C   G  +    V       G  S+ F+ ++LI+ Y + G+L   
Sbjct: 166 GVAPNAYTFSSVLGACTTPGMLTA---VHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGG 222

Query: 203 RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262
           R +FD M  + +V W +II G+   G G  A++LF  M  +G   +     SVL AC+  
Sbjct: 223 RRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGM 282

Query: 263 GLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWG 321
            + + G + + + +K    L      +  ++D+  + G L +A  L   M  + D   W 
Sbjct: 283 VMLEAGRQVHAHVLKYDRDLIL----HNALLDMYCKCGSLEDADALFHRM-PQRDVISWS 337

Query: 322 ALL-GACKIHKNVE 334
            ++ G  +  K+VE
Sbjct: 338 TMVSGLAQNGKSVE 351



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 11/185 (5%)

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF-----GSNPFLNNALINMYARCGNLKK 201
           D V+   ++  C   G    G  + + ++A+G          F++N+L +MYA+ G L  
Sbjct: 63  DPVSLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDD 122

Query: 202 ARAIFDGMPRKTVVSWTAIIGGYG-IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
           A  +FDGMP + VV+WT ++       G  + A++    M + G+ P+   F SVL AC+
Sbjct: 123 ALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACT 182

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320
             G+    L   +    K GL       + ++D   + G L+    + + M+   D  VW
Sbjct: 183 TPGM----LTAVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTR-DLVVW 237

Query: 321 GALLG 325
            +++ 
Sbjct: 238 NSIIA 242


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/546 (38%), Positives = 304/546 (55%), Gaps = 45/546 (8%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +NA+I+GY  N L ++A+ LF +M  E  +  +  T+  +L  C + G + +G   H 
Sbjct: 262 VSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHA 321

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL------------------ 113
             ++  +  +  V N L++ Y K GSV+  R++ DQ  E  L                  
Sbjct: 322 YILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDM 381

Query: 114 ---------------ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC 158
                          + W AMI GY QNG     ++L+R M + G  P++ T   VLS C
Sbjct: 382 ESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVC 441

Query: 159 AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM-PRKTVVSW 217
           A L     G ++  +   +    +  ++NA+I MYAR G+   AR +FD +  RK  ++W
Sbjct: 442 ASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITW 501

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
           T++I     HG GE AV LF+EML++G+ PD   +V VLSACSHAG  ++G  Y+  +KN
Sbjct: 502 TSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKN 561

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
           ++ + P   HY CMVDLL RAG  +EA E I  M VEPD   WG+LL AC++HKN ELAE
Sbjct: 562 EHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAE 621

Query: 338 LAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRV 397
           LA  K++ ++P N+G Y  ++N+YS         R+    +E+ ++K+ G+S+  ++ ++
Sbjct: 622 LAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKI 681

Query: 398 HLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEV-------HSE 450
           H+F   D  H Q   +Y M  +   + +E  G        S  H  D E+       HSE
Sbjct: 682 HVFGADDVVHPQRDAVYAMAAR---MWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSE 738

Query: 451 KLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFC 510
           KLAIAFG+I+T   T + VMKNLR+C DCH  IK +SK+ DR+ IVRDATRFHHF+ G C
Sbjct: 739 KLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLC 798

Query: 511 SCKDYW 516
           SCKDYW
Sbjct: 799 SCKDYW 804



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/415 (26%), Positives = 159/415 (38%), Gaps = 99/415 (23%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +  ++ G        EA+     M   G      T+  +L  C       +G   H 
Sbjct: 129 AVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHS 188

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGS-------------------------------VDY 100
             VK GL     V N ++ MY KCG                                +D 
Sbjct: 189 FVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDL 248

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY-REMKSLGVCPDAVTFVGVLSSCA 159
              LF+ +P + +++WNAMI+GY QNGL    L+L+ R +    + PD  T   VLS+CA
Sbjct: 249 AESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACA 308

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG----------- 208
           +LG   +G +V   I       N  + NALI+ YA+ G+++ AR I D            
Sbjct: 309 NLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISF 368

Query: 209 ----------------------MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
                                 M  + VV+WTA+I GY  +G  + A+ LF  M+  G  
Sbjct: 369 TALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPE 428

Query: 247 PDGTAFVSVLSACSHAGLTDKG-----------LEYFYGMKN-------KYGLQPGPEH- 287
           P+     +VLS C+     D G           LE    + N       + G  P     
Sbjct: 429 PNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRM 488

Query: 288 ------------YTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGAC 327
                       +T M+  L + GQ  EA+ L E ML   VEPD   +  +L AC
Sbjct: 489 FDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSAC 543



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 141/310 (45%), Gaps = 47/310 (15%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L++M+ K G +   R +F ++PE+  ++W  M+ G  + G     ++   +M + G  
Sbjct: 102 NSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFT 161

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKK---- 201
           P   T   VLSSCA   A +VG +V   +   G GS   + N+++NMY +CG+ +     
Sbjct: 162 PTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTV 221

Query: 202 ---------------------------ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
                                      A ++F+ MP +++VSW A+I GY  +G    A+
Sbjct: 222 FERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKAL 281

Query: 235 QLFDEML-KSGIRPDGTAFVSVLSACSHAGLTDKGLE---YFYGMKNKYGLQPGPEHYTC 290
           +LF  ML +S + PD     SVLSAC++ G    G +   Y    +  Y  Q        
Sbjct: 282 KLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQV----TNA 337

Query: 291 MVDLLGRAGQLNEALELI-ESMLVEPDGAVWGALL-GACKIHKNVELAELAFG-----KV 343
           ++    ++G +  A  ++ +SM  + +   + ALL G  KI  ++E A   FG      V
Sbjct: 338 LISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKI-GDMESAREMFGVMNNRDV 396

Query: 344 IKLEPMNTGY 353
           +    M  GY
Sbjct: 397 VAWTAMIVGY 406



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 11/179 (6%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           N F  N+L++M+A+ G L  AR +F  MP +  VSWT ++ G    G    A++   +M 
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 242 KSGIRPDGTAFVSVLSAC--SHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
             G  P      +VLS+C  + AG   + +  F     K GL         ++++ G+ G
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFV---VKLGLGSCVPVANSVLNMYGKCG 213

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF-----GKVIKLEPMNTGY 353
               A  + E M V    + W A++        ++LAE  F       ++    M  GY
Sbjct: 214 DAETASTVFERMPVRSVSS-WNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGY 271


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/567 (39%), Positives = 327/567 (57%), Gaps = 59/567 (10%)

Query: 6   IKSTHLTVC--YNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGY 62
            +S H   C  YN LI     ++   +A+ +F +M E   VE N  T   +   C     
Sbjct: 68  FRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAER 127

Query: 63  LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCG-------------------------- 96
           L  G   H + VKFGLD D  V + ++ MY+ CG                          
Sbjct: 128 LREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKR 187

Query: 97  --------------------SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY 136
                                ++  R LFD++P++ +++WN MI+GYAQ+G     +E++
Sbjct: 188 RVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVF 247

Query: 137 REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196
           REM+   V P+ VT V VL + + LGA  +G  V      N  G +  L +ALI+MYA+C
Sbjct: 248 REMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKC 307

Query: 197 GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL 256
           G+++KA  +F+G+P++ VV+W+ II G  +HG  +  +  F++M ++G+ P    ++ +L
Sbjct: 308 GSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLL 367

Query: 257 SACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPD 316
           SACSHAGL ++G  +F  M    GL+P  EHY CMVDLLGRAG L E+ ELI +M ++PD
Sbjct: 368 SACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPD 427

Query: 317 GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMM 376
             +W ALLGACK+H NVE+ +     +++L P ++G YV LSNIY+   N +G+ +VR+M
Sbjct: 428 DVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLM 487

Query: 377 MRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLEN---LVQEHDGTKR- 432
           M+E  ++KDPG S++EL G +H F+V D +H ++ +I+ ML ++     LV     T + 
Sbjct: 488 MKEMDVRKDPGCSWIELDGVIHEFLVEDDSHPKSKKIHSMLQEMSRNLILVGYRPNTTQV 547

Query: 433 ---SDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKI 489
               D+++ E  LN    HSEK+AIAFG+I+T P T + + KNLRIC DCH  IKL+SKI
Sbjct: 548 LTNMDEEDKESSLN---YHSEKIAIAFGLISTQPQTPLRITKNLRICEDCHSSIKLISKI 604

Query: 490 VDRQFIVRDATRFHHFKSGFCSCKDYW 516
             R+ IVRD  RFHHF +G CSC DYW
Sbjct: 605 YKRKIIVRDRKRFHHFVNGSCSCMDYW 631



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 139/252 (55%), Gaps = 4/252 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  + +   V +N +I+GY  +    EAV +F +M+   V  N VT++ +LP     
Sbjct: 215 LFDEMPQRS--VVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRL 272

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L LG   H   V+  + +D  +G+ L+ MY KCGS++   ++F+ +P++ ++TW+ +I
Sbjct: 273 GALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTII 332

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLE-VEQQIQANGF 179
           +G A +G A   L+ + +M+  GV P  VT++G+LS+C+H G  + G    +  ++ +G 
Sbjct: 333 AGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGL 392

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKT-VVSWTAIIGGYGIHGHGEVAVQLFD 238
                    ++++  R G L+++  +   MP K   V W A++G   +HG+ E+  ++ +
Sbjct: 393 EPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAE 452

Query: 239 EMLKSGIRPDGT 250
            +++      G+
Sbjct: 453 HLMELAPHDSGS 464



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 117/281 (41%), Gaps = 51/281 (18%)

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM-KSLGVCPDAVTFVGVLS 156
           +DY RK+F  +      ++N +I   +++      L ++ EM +   V P+  TF  V  
Sbjct: 61  LDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFK 120

Query: 157 SCAHLGAHSVGLEVEQQIQANGFGSNPF-------------------------------- 184
           +C        G +V       G  S+ F                                
Sbjct: 121 ACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCD 180

Query: 185 --------------LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHG 230
                         L N +I+ Y R G L+ AR +FD MP+++VVSW  +I GY   GH 
Sbjct: 181 GIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHF 240

Query: 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG-LEYFYGMKNKYGLQPGPEHYT 289
           + AV++F EM  + + P+    VSVL A S  G  + G   + Y ++N  G+       +
Sbjct: 241 KEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLG--S 298

Query: 290 CMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
            ++D+  + G + +AL++ E  L + +   W  ++    +H
Sbjct: 299 ALIDMYAKCGSIEKALQVFEG-LPKRNVVTWSTIIAGLAMH 338


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/546 (38%), Positives = 304/546 (55%), Gaps = 45/546 (8%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +NA+I+GY  N L ++A+ LF +M  E  +  +  T+  +L  C + G + +G   H 
Sbjct: 262 VSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHA 321

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL------------------ 113
             ++  +  +  V N L++ Y K GSV+  R++ DQ  E  L                  
Sbjct: 322 YILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDM 381

Query: 114 ---------------ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC 158
                          + W AMI GY QNG     ++L+R M + G  P++ T   VLS C
Sbjct: 382 ESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVC 441

Query: 159 AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM-PRKTVVSW 217
           A L     G ++  +   +    +  ++NA+I MYAR G+   AR +FD +  RK  ++W
Sbjct: 442 ASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITW 501

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
           T++I     HG GE AV LF+EML++G+ PD   +V VLSACSHAG  ++G  Y+  +KN
Sbjct: 502 TSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKN 561

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
           ++ + P   HY CMVDLL RAG  +EA E I  M VEPD   WG+LL AC++HKN ELAE
Sbjct: 562 EHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAE 621

Query: 338 LAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRV 397
           LA  K++ ++P N+G Y  ++N+YS         R+    +E+ ++K+ G+S+  ++ ++
Sbjct: 622 LAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKI 681

Query: 398 HLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEV-------HSE 450
           H+F   D  H Q   +Y M  +   + +E  G        S  H  D E+       HSE
Sbjct: 682 HVFGADDVVHPQRDAVYAMAAR---MWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSE 738

Query: 451 KLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFC 510
           KLAIAFG+I+T   T + VMKNLR+C DCH  IK +SK+ DR+ IVRDATRFHHF+ G C
Sbjct: 739 KLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLC 798

Query: 511 SCKDYW 516
           SCKDYW
Sbjct: 799 SCKDYW 804



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 110/415 (26%), Positives = 160/415 (38%), Gaps = 99/415 (23%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +  ++ G        EA+     M   G      T+  +L  C       +G   H 
Sbjct: 129 AVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHS 188

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGS-------------------------------VDY 100
             VK GL     V N ++ MY KCG                                +D 
Sbjct: 189 FVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDL 248

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY-REMKSLGVCPDAVTFVGVLSSCA 159
              LF+ +P++ +++WNAMI+GY QNGL    L+L+ R +    + PD  T   VLS+CA
Sbjct: 249 AESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACA 308

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG----------- 208
           +LG   +G +V   I       N  + NALI+ YA+ G+++ AR I D            
Sbjct: 309 NLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISF 368

Query: 209 ----------------------MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
                                 M  + VV+WTA+I GY  +G  + A+ LF  M+  G  
Sbjct: 369 TALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPE 428

Query: 247 PDGTAFVSVLSACSHAGLTDKG-----------LEYFYGMKN-------KYGLQPGPEH- 287
           P+     +VLS C+     D G           LE    + N       + G  P     
Sbjct: 429 PNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRM 488

Query: 288 ------------YTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGAC 327
                       +T M+  L + GQ  EA+ L E ML   VEPD   +  +L AC
Sbjct: 489 FDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSAC 543



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 141/310 (45%), Gaps = 47/310 (15%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L++M+ K G +   R +F ++PE+  ++W  M+ G  + G     ++   +M + G  
Sbjct: 102 NSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFT 161

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGN------- 198
           P   T   VLSSCA   A +VG +V   +   G GS   + N+++NMY +CG+       
Sbjct: 162 PTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTV 221

Query: 199 ------------------------LKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
                                   +  A ++F+ MP +++VSW A+I GY  +G    A+
Sbjct: 222 FERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKAL 281

Query: 235 QLFDEML-KSGIRPDGTAFVSVLSACSHAGLTDKGLE---YFYGMKNKYGLQPGPEHYTC 290
           +LF  ML +S + PD     SVLSAC++ G    G +   Y    +  Y  Q        
Sbjct: 282 KLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQV----TNA 337

Query: 291 MVDLLGRAGQLNEALELI-ESMLVEPDGAVWGALL-GACKIHKNVELAELAFG-----KV 343
           ++    ++G +  A  ++ +SM  + +   + ALL G  KI  ++E A   FG      V
Sbjct: 338 LISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKI-GDMESAREMFGVMNNRDV 396

Query: 344 IKLEPMNTGY 353
           +    M  GY
Sbjct: 397 VAWTAMIVGY 406



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 11/179 (6%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           N F  N+L++M+A+ G L  AR +F  MP +  VSWT ++ G    G    A++   +M 
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 242 KSGIRPDGTAFVSVLSAC--SHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
             G  P      +VLS+C  + AG   + +  F     K GL         ++++ G+ G
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFV---VKLGLGSCVPVANSVLNMYGKCG 213

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF-----GKVIKLEPMNTGY 353
               A  + E M V    + W A++        ++LAE  F       ++    M  GY
Sbjct: 214 DSETATTVFERMPVRSVSS-WNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGY 271


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/526 (40%), Positives = 310/526 (58%), Gaps = 12/526 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD++ K T     +NAL     L     E + L+ KM   GVE +  T   +L  CV  
Sbjct: 134 VFDKTRKRT--IYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVAS 191

Query: 61  ----GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
                +L  G   H    + G      +   L+ MY + G VDY   +F  +P + +++W
Sbjct: 192 ECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSW 251

Query: 117 NAMISGYAQNGLATHVLELYREM--KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
           +AMI+ YA+NG A   L  +REM  ++    P++VT V VL +CA L A   G  +   I
Sbjct: 252 SAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYI 311

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
              G  S   + +AL+ MY RCG L+  + +FD M  + VVSW ++I  YG+HG+G+ A+
Sbjct: 312 LRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAI 371

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
           Q+F+EML +G  P    FVSVL ACSH GL ++G   F  M   +G++P  EHY CMVDL
Sbjct: 372 QIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDL 431

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           LGRA +L+EA ++++ M  EP   VWG+LLG+C+IH NVELAE A  ++  LEP N G Y
Sbjct: 432 LGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNY 491

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
           VLL++IY+EA+  D + RV+ ++  R L+K PG  ++E++ +++ F+  D  +    +I+
Sbjct: 492 VLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIH 551

Query: 415 RMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVM 470
             L KL   ++E     ++     +  +EE       HSEKLA+AFG+INTS G  I + 
Sbjct: 552 AFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRIT 611

Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KNLR+C DCHLF K +SK ++++ +VRD  RFH FK+G CSC DYW
Sbjct: 612 KNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 148/324 (45%), Gaps = 18/324 (5%)

Query: 16  NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVK 75
           N LI        + +A+ +  +      +   + +LC    C     L   +  H   + 
Sbjct: 50  NQLIQSLCKEGKLKQAIRVLSQESSPSQQTYELLILC----CGHRSSLSDALRVHRHILD 105

Query: 76  FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLEL 135
            G D D  +   L+ MY   GSVDY RK+FD+  ++ +  WNA+       G    VL L
Sbjct: 106 NGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGL 165

Query: 136 YREMKSLGVCPDAVTFVGVLSSCA-------HLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
           Y +M  +GV  D  T+  VL +C        HL     G E+   +   G+ S+ ++   
Sbjct: 166 YWKMNRIGVESDRFTYTYVLKACVASECTVNHLMK---GKEIHAHLTRRGYSSHVYIMTT 222

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK--SGIR 246
           L++MYAR G +  A  +F GMP + VVSW+A+I  Y  +G    A++ F EM++      
Sbjct: 223 LVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSS 282

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           P+    VSVL AC+     ++G +  +G   + GL       + +V + GR G+L     
Sbjct: 283 PNSVTMVSVLQACASLAALEQG-KLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQR 341

Query: 307 LIESMLVEPDGAVWGALLGACKIH 330
           + + M  + D   W +L+ +  +H
Sbjct: 342 VFDRMH-DRDVVSWNSLISSYGVH 364



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 109/271 (40%), Gaps = 43/271 (15%)

Query: 114 ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQ 173
           I+ N +I    + G     + +  +  S    P   T+  ++  C H  + S  L V + 
Sbjct: 47  ISNNQLIQSLCKEGKLKQAIRVLSQESS----PSQQTYELLILCCGHRSSLSDALRVHRH 102

Query: 174 IQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVA 233
           I  NG   +PFL   LI MY+  G++  AR +FD   ++T+  W A+     + GHGE  
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162

Query: 234 VQLFDEMLKSGIRPDGTAFVSVLSACS---------------HAGLTDKG-------LEY 271
           + L+ +M + G+  D   +  VL AC                HA LT +G       +  
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTT 222

Query: 272 FYGMKNKYGLQPGPEH------------YTCMVDLLGRAGQLNEALELIESMLVE----- 314
              M  ++G      +            ++ M+    + G+  EAL     M+ E     
Sbjct: 223 LVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSS 282

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIK 345
           P+     ++L AC     +E  +L  G +++
Sbjct: 283 PNSVTMVSVLQACASLAALEQGKLIHGYILR 313


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 225/596 (37%), Positives = 320/596 (53%), Gaps = 85/596 (14%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  +   + +  N +I  YV N    E V +FG M    V  +  T  C+L  C   
Sbjct: 96  VFDEIPERNVIII--NVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCS 153

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G + +G   H    K GL     VGN L++MY KCG +   R + D++  + +++WN+++
Sbjct: 154 GTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLV 213

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSV-------------- 166
            GYAQN      LE+ REM+S+ +  DA T   +L + ++    +V              
Sbjct: 214 VGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKS 273

Query: 167 -------------------GLEVEQQIQANGFG--------------------------- 180
                               +E+  +++A+GF                            
Sbjct: 274 LVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHG 333

Query: 181 --------SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
                    N  L NALI+MYA+CG L+KAR +F+ M  + VVSWTA+I  YG  G G  
Sbjct: 334 YIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCD 393

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
           AV LF ++  SG+ PD  AFV+ L+ACSHAGL ++G   F  M + Y + P  EH  CMV
Sbjct: 394 AVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMV 453

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTG 352
           DLLGRAG++ EA   I+ M +EP+  VWGALLGAC++H + ++  LA  K+ +L P  +G
Sbjct: 454 DLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSG 513

Query: 353 YYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVE 412
           YYVLLSNIY++A   + +  +R +M+ + LKK+PG S VE+   +H F+VGDR+H Q+ E
Sbjct: 514 YYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDE 573

Query: 413 IYRMLDKLENLVQE-------HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGT 465
           IYR LD L   ++E              ++++ E HL    VHSEKLAI F ++NT    
Sbjct: 574 IYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHL---AVHSEKLAIVFALMNTKEEE 630

Query: 466 E-----IVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           E     I + KNLRICGDCH+  KL+S+I  R+ I+RD  RFH F+ G CSC DYW
Sbjct: 631 EDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 126/265 (47%), Gaps = 11/265 (4%)

Query: 83  SVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL 142
           S+G  LM  Y     V   RK+FD++PE+ +I  N MI  Y  NG     ++++  M   
Sbjct: 75  SLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGC 134

Query: 143 GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202
            V PD  TF  VL +C+  G   +G ++       G  S  F+ N L++MY +CG L +A
Sbjct: 135 NVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEA 194

Query: 203 RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262
           R + D M R+ VVSW +++ GY  +   + A+++  EM    I  D     S+L A S+ 
Sbjct: 195 RLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNT 254

Query: 263 GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV---EPDGAV 319
             T + + Y   M  K G +     +  M+ +  +     EA+EL   M     EPD   
Sbjct: 255 --TTENVMYVKDMFFKMG-KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVS 311

Query: 320 WGALLGACKIHKNVELAELAFGKVI 344
             ++L AC      + + L+ GK I
Sbjct: 312 ITSVLPACG-----DTSALSLGKKI 331



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 8/158 (5%)

Query: 170 VEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGY---GI 226
           V  +I       N  L   L+  YA   ++  AR +FD +P + V+    +I  Y   G 
Sbjct: 61  VHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGF 120

Query: 227 HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPE 286
           +G G   V++F  M    +RPD   F  VL ACS +G    G +  +G   K GL     
Sbjct: 121 YGEG---VKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRK-IHGSATKVGLSSTLF 176

Query: 287 HYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
               +V + G+ G L+EA  +++ M    D   W +L+
Sbjct: 177 VGNGLVSMYGKCGFLSEARLVLDEM-SRRDVVSWNSLV 213


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/544 (39%), Positives = 315/544 (57%), Gaps = 43/544 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+I+ + L  L  +A+ LF +M  + V+ N +TM+ +L  C     L  G      
Sbjct: 240 VSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSY 299

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW---------------- 116
               G      + N ++ MYVKCG ++  + LF+++ EK +++W                
Sbjct: 300 IENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEA 359

Query: 117 ---------------NAMISGYAQNGLATHVLELYREMK-SLGVCPDAVTFVGVLSSCAH 160
                          NA+IS Y QNG     L L+ EM+ S    PD VT +  L + A 
Sbjct: 360 HCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQ 419

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           LGA   G  +   I+ +    N  L  +L++MYA+CGNL KA  +F  + RK V  W+A+
Sbjct: 420 LGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAM 479

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           IG   ++G G+ A+ LF  ML++ I+P+   F ++L AC+HAGL ++G + F  M+  YG
Sbjct: 480 IGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYG 539

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           + P  +HY C+VD+ GRAG L +A   IE M + P  AVWGALLGAC  H NVELAELA+
Sbjct: 540 IVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAY 599

Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400
             +++LEP N G +VLLSNIY++A + + +  +R +MR+  +KK+P  S +++ G VH F
Sbjct: 600 QNLLELEPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEF 659

Query: 401 MVGDRNHHQTVEIYRMLDKLENLVQE-------HDGTKRSDQKN-SEEHLNDTEVHSEKL 452
           +VGD +H  + +IY  LD++    +         +  + S++ N  E+ LN   VHSEKL
Sbjct: 660 LVGDNSHPFSQKIYSKLDEISEKFKPIGYKPDMSNLLQLSEEDNLMEQSLN---VHSEKL 716

Query: 453 AIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSC 512
           AIAFG+I+T+    I ++KN+RICGDCH F KLVS++ DR  ++RD  RFHHF+ G CSC
Sbjct: 717 AIAFGLISTASSQPIRIVKNIRICGDCHAFAKLVSQLYDRDILLRDRYRFHHFRGGKCSC 776

Query: 513 KDYW 516
            DYW
Sbjct: 777 LDYW 780



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/350 (29%), Positives = 160/350 (45%), Gaps = 35/350 (10%)

Query: 14  CYNALISGYVLNSLVSEAVSLFGKMREQGVEI-NSVTMLCLLPICVDPGYLWLGMCCHCI 72
           C+N LI GY  +S  +++  +F  M     E  N  T   L         L LG   H +
Sbjct: 139 CWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGM 198

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K  L  D  + N L+  Y   G+ D   ++F  +P K +++WNAMI+ +A  GL    
Sbjct: 199 VIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKA 258

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L++EM+   V P+ +T V VLS+CA       G  +   I+ NGF  +  LNNA+++M
Sbjct: 259 LLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDM 318

Query: 193 YARC-------------------------------GNLKKARAIFDGMPRKTVVSWTAII 221
           Y +C                               GN  +A  IFD MP K   +W A+I
Sbjct: 319 YVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALI 378

Query: 222 GGYGIHGHGEVAVQLFDEM-LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
             Y  +G   VA+ LF EM L    +PD    +  L A +  G  D G  + +    K+ 
Sbjct: 379 SAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFG-HWIHVYIKKHD 437

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           +       T ++D+  + G LN+A+E+  + +   D  VW A++GA  ++
Sbjct: 438 INLNCHLATSLLDMYAKCGNLNKAMEVFHA-VERKDVYVWSAMIGALAMY 486



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 134/261 (51%), Gaps = 8/261 (3%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
           T  +NALIS Y  N     A+SLF +M+  +  + + VT++C L      G +  G   H
Sbjct: 371 TAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIH 430

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
               K  ++L+  +   L+ MY KCG+++   ++F  V  K +  W+AMI   A  G   
Sbjct: 431 VYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGK 490

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--A 188
             L+L+  M    + P+AVTF  +L +C H G  + G ++ +Q++   +G  P + +   
Sbjct: 491 AALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEP-LYGIVPQIQHYVC 549

Query: 189 LINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           +++++ R G L+KA +  + MP   T   W A++G    HG+ E+A   +  +L+  + P
Sbjct: 550 VVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLE--LEP 607

Query: 248 -DGTAFVSVLSACSHAGLTDK 267
            +  AFV + +  + AG  +K
Sbjct: 608 CNHGAFVLLSNIYAKAGDWEK 628



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 128/288 (44%), Gaps = 8/288 (2%)

Query: 40  EQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYV--KCGS 97
           E+G E+ S  +L  +  C +   L      H   ++     D    + L+T Y    C  
Sbjct: 65  EKGNEVESTNILEFIDQCTNTMQL---KQIHAHMLRTSRFCDPYTASKLLTAYAISSCSC 121

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM-KSLGVCPDAVTFVGVLS 156
           + Y + +F+Q+P+  L  WN +I GYA +   T    ++  M  S    P+  TF  +  
Sbjct: 122 LIYAKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFK 181

Query: 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS 216
           + + L    +G  +   +      S+ F+ N+LIN Y   G    A  +F  MP K VVS
Sbjct: 182 AASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVS 241

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
           W A+I  + + G  + A+ LF EM    ++P+    VSVLSAC+     + G      ++
Sbjct: 242 WNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIE 301

Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
           N  G          M+D+  + G +N+A +L   M  E D   W  +L
Sbjct: 302 NN-GFTEHLILNNAMLDMYVKCGCINDAKDLFNKM-SEKDIVSWTTML 347


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/548 (37%), Positives = 318/548 (58%), Gaps = 49/548 (8%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGK-MREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +N++I+G   +   +EA+  F   +++  ++ +  ++   L  C +   L  G   H 
Sbjct: 205 VSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHG 264

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKL--------------------------- 104
             V+   D   +VGN L++MY K G V+  R++                           
Sbjct: 265 YIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDI 324

Query: 105 ------FDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC 158
                 F+ + +  ++ W AMI GY QNGL    +E+++ M S G  P++ T   +LS+ 
Sbjct: 325 TPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSAS 384

Query: 159 AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR-KTVVSW 217
           + + + + G ++      +G   +P + NAL  MYA+ G++  AR +F+ + + +  VSW
Sbjct: 385 SSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSW 444

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
           T++I     HG GE A++LF++ML  GI+PD   +V VLSAC+H GL ++G  YF  MKN
Sbjct: 445 TSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKN 504

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
            + + P   HY CMVDL GRAG L EA + +E+M +EPD   WG+LL +CK++KNV+LA+
Sbjct: 505 VHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAK 564

Query: 338 LAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRV 397
           +A  +++ +EP N+G Y  L+N+YS     D   ++R +M+ R +KK+ G S+V+++ + 
Sbjct: 565 VAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKT 624

Query: 398 HLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEV---------H 448
           H+F V D  H Q  EIY+M+DK+   ++     K     ++E  L+D EV         H
Sbjct: 625 HVFGVEDGLHPQKDEIYKMMDKIWKEIK-----KMGFAPDTESVLHDLEVEVKDQILRYH 679

Query: 449 SEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSG 508
           SEKLAIAFGII+T   T + +MKNLR+C DCH  IK +SK+VDR+ IVRDATRFHHFK G
Sbjct: 680 SEKLAIAFGIISTPENTTLRIMKNLRVCNDCHNAIKFISKLVDREIIVRDATRFHHFKDG 739

Query: 509 FCSCKDYW 516
            CSCKDYW
Sbjct: 740 SCSCKDYW 747



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 166/414 (40%), Gaps = 68/414 (16%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V +  +I GY       +A+ +F  M +  V     T+  +L  C   G   +G   H 
Sbjct: 72  SVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHS 131

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMIS---------- 121
             VK GL     V N L+ MY K G +   + +FD++  +   +WNAMIS          
Sbjct: 132 FVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDL 191

Query: 122 ---------------------GYAQNGLATHVLELYRE-MKSLGVCPDAVTFVGVLSSCA 159
                                G  Q+G     L+ +   +K   + PD  +    LS+CA
Sbjct: 192 ALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACA 251

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC----------------------- 196
           +L   S G ++   I    F ++  + NALI+MYA+                        
Sbjct: 252 NLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAF 311

Query: 197 ----------GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
                     G++  AR IF+ +    VV+WTA+I GY  +G    A+++F  M+  G R
Sbjct: 312 TALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPR 371

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           P+     ++LSA S     + G +  +    + G    P     +  +  +AG +N A +
Sbjct: 372 PNSFTLAAMLSASSSVTSLNHG-KQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARK 430

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKL--EPMNTGYYVLLS 358
           +   +    D   W +++ A   H   E A   F +++ L  +P +  Y  +LS
Sbjct: 431 VFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLS 484



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 88/400 (22%), Positives = 165/400 (41%), Gaps = 109/400 (27%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N +++ Y K G ++   ++FD +P +  ++W  +I GY Q G     ++++ +M    V 
Sbjct: 45  NTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVL 104

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P   T   VL+SCA  G+  +G +V   +   G  +   + N+L+NMYA+ G+LK A+ +
Sbjct: 105 PTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVV 164

Query: 206 FDGM-------------------------------PRKTVVSWTAIIGGYGIHGHGEVAV 234
           FD M                                 + +VSW ++I G   HG    A+
Sbjct: 165 FDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEAL 224

Query: 235 QLFDEMLK-SGIRPDGTAFVSVLSACSH-------------------------------- 261
           Q F  +LK + ++PD  +  S LSAC++                                
Sbjct: 225 QFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISM 284

Query: 262 ----------------AGLTDKGLEYFYGMKNKY----GLQPGPEHYTCMVD-------- 293
                           +G++D  +  F  + N Y     + P  + +  + D        
Sbjct: 285 YAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTA 344

Query: 294 -LLG--RAGQLNEALELIESMLVE---PDGAVWGALLGACKIHKNVELAELAFGKVIKLE 347
            ++G  + G  N+A+E+ ++M+ E   P+     A+L A        +  L  GK I   
Sbjct: 345 MIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASS-----SVTSLNHGKQIHAS 399

Query: 348 PMNTGYYV------LLSNIYSEARNLDGIMRVRMMMRERR 381
            + +G  +       L+ +Y++A +++G  +V  ++R+ R
Sbjct: 400 AIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNR 439



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 36/196 (18%)

Query: 178 GFGSNPFLNNALINMYARC-------------------------------GNLKKARAIF 206
           G   + +L N L+N+YA+                                G L+KA  +F
Sbjct: 5   GLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVF 64

Query: 207 DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD 266
           D +P +  VSWT II GY   G  E A+++F +M+K  + P      +VL++C+  G   
Sbjct: 65  DLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRG 124

Query: 267 KGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
            G +  +    K GL         ++++  + G L  A  + + M +  + + W A++  
Sbjct: 125 IG-KKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLR-NTSSWNAMIS- 181

Query: 327 CKIHKNVELAELAFGK 342
             +H N    +LA  +
Sbjct: 182 --LHMNCGRVDLALAQ 195


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/510 (41%), Positives = 302/510 (59%), Gaps = 6/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+ISGY       EA+ LF +M +  V+ +  TM+ ++  C   G + LG   H  
Sbjct: 201 VSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSW 260

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               GL  +  + N L+ +Y KCG V+    LF  +  K +I+WN MI GY    L    
Sbjct: 261 IDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEA 320

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI--QANGFGSNPFLNNALI 190
           L L++EM   G  P+ VT + +L +CA LGA   G  +   I  +  G  +   L  +LI
Sbjct: 321 LLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLI 380

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MYA+CG+++ A  +F+ M  +T+ +  A+I G+ +HG    A  +F  M K+GI PD  
Sbjct: 381 DMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDI 440

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            FV +LSACSH+G+ D G   F  M   Y + P  EHY CM+DLLG  G   EA E+I +
Sbjct: 441 TFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINT 500

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M +EPDG +W +LL ACK+H NVEL E    K+IK+EP N G YVLLSNIY+ A   + +
Sbjct: 501 MTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEV 560

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH--- 427
             +R ++ ++ +KK PG S +E+   VH F++GD+ H +  EIY ML+++E L++E    
Sbjct: 561 ANIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFV 620

Query: 428 -DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
            D ++   +   E        HSEKLAIAFG+I+T PGT++ ++KNLR+C +CH   KL+
Sbjct: 621 PDTSEVLQEMEEEFKQGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLI 680

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SKI  R+ I RD TRFHHF+ G CSC DYW
Sbjct: 681 SKIYKREIIARDRTRFHHFRDGVCSCNDYW 710



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/389 (30%), Positives = 188/389 (48%), Gaps = 36/389 (9%)

Query: 4   ESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL 63
           E+I+  +L + +N +  G+ L+S    A+ L+  M   G+  NS T   LL  C      
Sbjct: 61  ETIQEPNLLI-WNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVS 119

Query: 64  WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS-------------------------- 97
             G   H   +K G +LD  V   L++MYVK G                           
Sbjct: 120 KEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGY 179

Query: 98  -----VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFV 152
                ++  +K+FD++P K +++WNA+ISGYA  G     L+L++EM    V PD  T V
Sbjct: 180 ASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMV 239

Query: 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK 212
            V+S+CA  G+  +G +V   I  +G GSN  + NALI++Y++CG ++ A  +F G+  K
Sbjct: 240 TVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNK 299

Query: 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-Y 271
            V+SW  +IGGY      + A+ LF EML+SG  P+    +S+L AC+  G  D G   +
Sbjct: 300 DVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIH 359

Query: 272 FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHK 331
            Y  K   G+       T ++D+  + G +  A ++  SM      A   A++    +H 
Sbjct: 360 VYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSAC-NAMIFGFAMHG 418

Query: 332 NVELAELAFGKVIK--LEPMNTGYYVLLS 358
               A   F ++ K  +EP +  +  LLS
Sbjct: 419 RANAAFDIFSRMRKNGIEPDDITFVGLLS 447



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 123/257 (47%), Gaps = 33/257 (12%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           Y   +F+ + E  L+ WN M  G+A +      ++LY  M SLG+ P++ TF  +L SCA
Sbjct: 55  YAISVFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCA 114

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
            L     G ++   +   G+  + +++ +LI+MY + G  K A  +FDG   + VVS+TA
Sbjct: 115 KLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTA 174

Query: 220 IIGGYGIHGHGEVAVQLFD-------------------------------EMLKSGIRPD 248
           +I GY   G+ E A ++FD                               EM+K+ ++PD
Sbjct: 175 LITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPD 234

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
            +  V+V+SAC+ +G    G +  +   + +GL    +    ++DL  + G++  A  L 
Sbjct: 235 ESTMVTVVSACAQSGSIQLGRQ-VHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLF 293

Query: 309 ESMLVEPDGAVWGALLG 325
           +  L   D   W  ++G
Sbjct: 294 QG-LSNKDVISWNTMIG 309


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/508 (40%), Positives = 299/508 (58%), Gaps = 37/508 (7%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
            V +N+L++G   N    +A+ +  +M   G++ ++ TM  LLP   +             
Sbjct: 1193 VSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTN------------- 1239

Query: 73   CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
                          CL        +V + +++F ++  K L++WN MI+ Y  N +    
Sbjct: 1240 -------------TCL-------DNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEA 1279

Query: 133  LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            ++++ +M+   V PDA++   VL +C  L A  +G  + + +       N  L NALI+M
Sbjct: 1280 VDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDM 1339

Query: 193  YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
            YA+CG L+ AR +FD M  + VVSWT++I  YG++G G  AV LF  M   G+ PD  AF
Sbjct: 1340 YAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAF 1399

Query: 253  VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            VSVLSACSHAGL D+G  YF  M  +  + P  EH+ CMVDLLGRAGQ++EA   I+ M 
Sbjct: 1400 VSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMP 1459

Query: 313  VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            +EP+  VWGALL AC+++ N+ +  LA  ++ +L P  +GYYVLLSNIY++A   + +  
Sbjct: 1460 MEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTT 1519

Query: 373  VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
            VR +M+ + +KK PG S  EL  RVH F+ GD++H Q+ +IY  LD L   ++E      
Sbjct: 1520 VRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVLVGKMKEAGYVPE 1579

Query: 433  SDQKNSEEHLNDTE----VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
            +D    +    D E    VHSEKLAIAF I+NT+PG+ I + KNLR+CGDCH+  KL+SK
Sbjct: 1580 TDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISK 1639

Query: 489  IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            IV R+  +RD  RFHHF +G CSC DYW
Sbjct: 1640 IVGREITIRDTNRFHHFYNGVCSCGDYW 1667



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 154/328 (46%), Gaps = 41/328 (12%)

Query: 1    VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
            +FDE  K     V +N +I  YV N L S+A+ +F  M   G++ +  T  C+L      
Sbjct: 1082 IFDEIPKKN--VVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGS 1139

Query: 61   GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
              LW+GM  H   V+ GLDL+  VGN L++MY KCG +    ++ DZ+P + +++WN+++
Sbjct: 1140 EDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLV 1199

Query: 121  SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            +G A+NG     LE+ +EM+ LG+ PDA T   +L                         
Sbjct: 1200 AGCARNGQFDDALEVCKEMELLGLKPDAGTMASLL------------------------- 1234

Query: 181  SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
              P + N  ++      N+   + +F  +  K++VSW  +I  Y  +     AV +F +M
Sbjct: 1235 --PAVTNTCLD------NVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQM 1286

Query: 241  LKSGIRPDGTAFVSVLSACSH--AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
                + PD  +  SVL AC    A L  + +  +   K    LQP       ++D+  + 
Sbjct: 1287 EDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKR---LQPNLLLENALIDMYAKC 1343

Query: 299  GQLNEALELIESMLVEPDGAVWGALLGA 326
            G L  A E+ + M    D   W +++ A
Sbjct: 1344 GCLEYAREVFDQMKFR-DVVSWTSMISA 1370



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 141/291 (48%), Gaps = 15/291 (5%)

Query: 59   DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
            +P   +L      IC+   L  + S+G  LM  Y  CG     R +FD++P+K ++ +N 
Sbjct: 1037 NPDIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNV 1096

Query: 119  MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
            MI  Y  N L +  L +++ M   G+ PD  T+  VL + +      VG+++   +   G
Sbjct: 1097 MIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVG 1156

Query: 179  FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
               N F+ N LI+MY +CG L +A  + D MP + VVSW +++ G   +G  + A+++  
Sbjct: 1157 LDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCK 1216

Query: 239  EMLKSGIRPDGTAFVSVLSACSHAGLTDKGL--EYFYGMKNKYGLQPGPEHYTCMVDLLG 296
            EM   G++PD     S+L A ++  L +     E F  + NK  +      +  M+ +  
Sbjct: 1217 EMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVS-----WNVMIAVYM 1271

Query: 297  RAGQLNEALEL---IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI 344
                  EA+++   +E   V+PD     ++L AC      +L+ L  G+ I
Sbjct: 1272 NNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACG-----DLSALLLGRRI 1317


>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
 gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
          Length = 485

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/485 (40%), Positives = 292/485 (60%), Gaps = 6/485 (1%)

Query: 38  MREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS 97
           M  +GVE N VT + +L     PG L  G   H      GL++D  VG  L+ MY KC S
Sbjct: 1   MEIRGVERNKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQS 60

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL--GVCPDAVTFVGVL 155
           V+  R  F+++    +++W+AM++ YAQNG A   LELYREM S   G+ P+ VTF+ +L
Sbjct: 61  VEEARAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLL 120

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
            +C+ LGA + G ++   +   GF ++  + NAL+N Y RCG+L  A+ +FDGM R+ V+
Sbjct: 121 DACSFLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVI 180

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           SW+++I  +   G  + A++L+  ML  G  PD   F+SVL ACS++G+ +   ++F  +
Sbjct: 181 SWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSI 240

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVEL 335
                ++P  EHY CMVD+LGRAG+L +A +L+  M   P   ++  +L ACK++ +VE 
Sbjct: 241 VGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVER 300

Query: 336 AELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKG 395
            E A   V +L+P N+  Y+ L+NIYS A+      R+R +M ER +KK PG S++E+  
Sbjct: 301 GEAAAEVVFELDPENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLD 360

Query: 396 RVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----HDGTKRSDQKNSEEHLNDTEVHSEK 451
           RVH F+ GD+ H Q  EIY  + +L   ++E     D          +E  N    HSEK
Sbjct: 361 RVHEFIAGDKMHPQRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEK 420

Query: 452 LAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCS 511
           LAIAFG+I+T PG  + ++KNLR+C DCH   K++SK+  R+ +VRD  RFHHF  G CS
Sbjct: 421 LAIAFGLISTPPGAPLRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFLDGMCS 480

Query: 512 CKDYW 516
           C DYW
Sbjct: 481 CNDYW 485


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/457 (42%), Positives = 289/457 (63%), Gaps = 5/457 (1%)

Query: 65  LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYA 124
           LG   H + ++ G      V N L+ +Y  CG V    K+FD++PEK L+ WN++I+G+A
Sbjct: 6   LGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFA 65

Query: 125 QNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF 184
           +NG     L LY EM S G+ PD  T V +LS+CA +GA ++G  V   +   G   N  
Sbjct: 66  ENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLH 125

Query: 185 LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS- 243
            +N L+++YARCG +++A+ +FD M  K  VSWT++I G  ++G G+ A++LF  M  + 
Sbjct: 126 SSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTE 185

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
           G+ P    FV +L ACSH G+  +G EYF  M+ +Y ++P  EH+ CMVDLL RAGQ+ +
Sbjct: 186 GLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKK 245

Query: 304 ALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE 363
           A E I+SM ++P+  +W  LLGAC +H + +LAE A  ++++LEP ++G YVLLSN+Y+ 
Sbjct: 246 AYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYAS 305

Query: 364 ARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENL 423
            +    + ++R  M    +KK PG+S VE+  RVH F++GD++H Q+  IY  L ++   
Sbjct: 306 EQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGR 365

Query: 424 VQEHDGTKRSDQ----KNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDC 479
           ++      +          EE  N    HSEK+AIAF +I+T   + I V+KNLR+C DC
Sbjct: 366 LRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADC 425

Query: 480 HLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           HL IKLVSK+ +R+ +VRD +RFHHFK+G CSC+DYW
Sbjct: 426 HLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 462



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++I+G+  N    EA++L+ +M  +G++ +  T++ LL  C   G L LG   H  
Sbjct: 55  VAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVY 114

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K GL  +    N L+ +Y +CG V+  + LFD++ +K  ++W ++I G A NG     
Sbjct: 115 MIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEA 174

Query: 133 LELYREMKSL-GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--AL 189
           +EL++ M+S  G+ P  +TFVG+L +C+H G    G E  ++++   +   P + +   +
Sbjct: 175 IELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREE-YKIEPRIEHFGCM 233

Query: 190 INMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVA 233
           +++ AR G +KKA      MP +  VV W  ++G   +HG  ++A
Sbjct: 234 VDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLA 278


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/509 (40%), Positives = 293/509 (57%), Gaps = 6/509 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +NA+I+GYV N    E V +F  M E     + VT+L +   C   G   LG      
Sbjct: 238 IAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEY 297

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             + G+    ++   L+ MY KCG +D  R+LFD++  + ++ W+AMISGY Q+      
Sbjct: 298 AEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREA 357

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L ++ EM+   V P+ VT V VLS+CA LGA   G  V   I+         L  AL++ 
Sbjct: 358 LAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDF 417

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG +K A   F+ MP +   +WTA+I G   +G    A++LF  ML++ I P    F
Sbjct: 418 YAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTF 477

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + VL ACSH  L ++G  +F  M   YG+ P  EHY CMVDLLGRAG ++EA + I +M 
Sbjct: 478 IGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMP 537

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           +EP+  VW ALL AC +HKNVE+ E A  +++ L+P ++G Y+LLSN Y+          
Sbjct: 538 IEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAM 597

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY-RMLDKLENLVQ----EH 427
           VR  M+E+ ++K PG S +EL+G +  F   D  H Q  EIY ++ + +EN+       +
Sbjct: 598 VRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTEIYEKVHEMIENIKMVGYIPN 657

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
               R D    E+ ++ +  HSEKLAIAFG++ + PG  I + KNLR+C DCH   KL+S
Sbjct: 658 TADARLDVDEYEKQVSVSH-HSEKLAIAFGLMKSRPGATIRLSKNLRVCIDCHSATKLIS 716

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K+ +R+ IVRD  RFHHFK G CSC DYW
Sbjct: 717 KVYNREIIVRDRNRFHHFKDGLCSCNDYW 745



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 110/349 (31%), Positives = 176/349 (50%), Gaps = 8/349 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           YN LI  ++      +A+ LF +M  +  V  +  T+   +  C     L +G       
Sbjct: 138 YNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQAYA 197

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
            K G  +D  V N L+ MY  CG V     LF  V  KG+I WNAMI+GY +NG    V+
Sbjct: 198 FKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVV 257

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
           E+++ M  +    D VT + V ++C  LG  ++G  + +  +  G   +  L  AL++MY
Sbjct: 258 EMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMY 317

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
           A+CG L KAR +FD M  + VV+W+A+I GY        A+ +F+EM  + + P+    V
Sbjct: 318 AKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMV 377

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           SVLSAC+  G  + G ++ +    +  L       T +VD   + G + +A++  ESM V
Sbjct: 378 SVLSACAVLGALETG-KWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPV 436

Query: 314 EPDGAVWGALL-GACKIHKNVELAELAFGKVIK--LEPMNTGYY-VLLS 358
             +   W AL+ G     ++ E  EL F  +++  +EP +  +  VLL+
Sbjct: 437 R-NTWTWTALIKGMASNGRSREALEL-FSSMLEANIEPTDVTFIGVLLA 483


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/514 (40%), Positives = 309/514 (60%), Gaps = 17/514 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC---C 69
           V + ++I+GY  N   S+A+ LF +M   G E N  T+  L+  C   GY+    C    
Sbjct: 141 VSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCC---GYMASYNCGRQI 197

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H  C K+G   +  VG+ L+ MY +CG +     +FD++  K  ++WNA+I+GYA+ G  
Sbjct: 198 HACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEG 257

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              L L+  M+  G  P   T+  +LSSC+ +G    G  +   +  +      ++ N L
Sbjct: 258 EEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTL 317

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++MYA+ G+++ A  +FD + +  VVS  +++ GY  HG G+ A Q FDEM++ GI P+ 
Sbjct: 318 LHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPND 377

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
             F+SVL+ACSHA L D+G  YF G+  KY ++P   HY  +VDLLGRAG L++A   IE
Sbjct: 378 ITFLSVLTACSHARLLDEGKHYF-GLMRKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIE 436

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDG 369
            M +EP  A+WGALLGA K+HKN E+   A  +V +L+P   G + LL+NIY+ A   + 
Sbjct: 437 EMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYASAGRWED 496

Query: 370 IMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDG 429
           + +VR +M++  +KK+P  S+VE++  VH+F+  D  H Q  +I++M +KL   ++E   
Sbjct: 497 VAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEKLNQKIKEIGY 556

Query: 430 TKRS-------DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLF 482
              +       DQ+  E +L   + HSEKLA++F ++NT PG+ I +MKN+R+CGDCH  
Sbjct: 557 VPDTSHVLLFVDQQEKELNL---QYHSEKLALSFALLNTPPGSTIRIMKNIRVCGDCHSA 613

Query: 483 IKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           IK VS +V R+ IVRD  RFHHF  GFCSC DYW
Sbjct: 614 IKYVSLVVKREIIVRDTNRFHHFCDGFCSCGDYW 647



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 179/352 (50%), Gaps = 7/352 (1%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           LL  C   G L  G   H   +      D  + N L+ MY +CGS++  R+LFD++P + 
Sbjct: 80  LLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRD 139

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
           +++W +MI+GYAQN  A+  L L+  M S G  P+  T   ++  C ++ +++ G ++  
Sbjct: 140 MVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHA 199

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
                G  SN F+ ++L++MYARCG L +A  +FD +  K  VSW A+I GY   G GE 
Sbjct: 200 CCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEE 259

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
           A+ LF  M + G RP    + ++LS+CS  G  ++G ++ +    K   +        ++
Sbjct: 260 ALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQG-KWLHAHLMKSSQKLVGYVGNTLL 318

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMN 350
            +  ++G + +A E +   LV+ D     ++L     H   + A   F ++I+  +EP +
Sbjct: 319 HMYAKSGSIRDA-EKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPND 377

Query: 351 TGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGY--SYVELKGRVHLF 400
             +  +L+   S AR LD       +MR+  ++    +  + V+L GR  L 
Sbjct: 378 ITFLSVLTAC-SHARLLDEGKHYFGLMRKYNIEPKVSHYATIVDLLGRAGLL 428



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 100/219 (45%), Gaps = 4/219 (1%)

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           PD   +  +L  C  LG    G  V   +  + F  +  + N+L+ MYARCG+L+ AR +
Sbjct: 72  PDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRL 131

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           FD MP + +VSWT++I GY  +     A+ LF  ML  G  P+     S++  C +    
Sbjct: 132 FDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASY 191

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           + G +  +    KYG        + +VD+  R G L EA+ L+   L   +   W AL+ 
Sbjct: 192 NCGRQ-IHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAM-LVFDKLGCKNEVSWNALIA 249

Query: 326 ACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNIYS 362
                   E A   F ++ +    P    Y  LLS+  S
Sbjct: 250 GYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSS 288


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/544 (39%), Positives = 316/544 (58%), Gaps = 45/544 (8%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           + A+I GY +     EA++++G MR++ +   S T   LL  C   G L LG   H    
Sbjct: 118 WTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQFHAQTF 177

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE------------------------ 110
           +        VGN ++ MYVKCGS+   RK+FD++PE                        
Sbjct: 178 RLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAAD 237

Query: 111 -------KGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163
                  K ++ W AM++G+AQN      LE +  M+  G+  D VT  G +S+CA LGA
Sbjct: 238 LFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGA 297

Query: 164 HSVGLEVEQQIQANGFGSNP--FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
                   Q  Q +G+  +    + +ALI+MY++CGN+++A  +F  M  K V S++++I
Sbjct: 298 SKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMI 357

Query: 222 GGYGIHGHGEVAVQLFDEML-KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
            G   HG  + A+ LF  M+ ++ I+P+   FV  L+ACSH+GL D+G + F  M   +G
Sbjct: 358 LGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFG 417

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           ++P  +HYTCMVDLLGRAG+L EALELI++M VEP G VWGALLGAC+IH N ++AE+A 
Sbjct: 418 VEPTRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPDIAEIAA 477

Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSY-VELKGRVHL 399
             + +LEP   G Y+LLSN+YS A +  G++ VR +++E+ LKK P  S+ V+  G++H 
Sbjct: 478 EHLFELEPDIIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDKNGQMHK 537

Query: 400 FMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK-RSDQKNSEEHLNDTE------VHSEKL 452
           F  G+ NH  + +I    DKLE LV+       + D  +    ++D         H+EKL
Sbjct: 538 FFPGNLNHPMSKKIQ---DKLEELVERLTALGYQPDLSSVPYDVSDNAKRLILIQHTEKL 594

Query: 453 AIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSC 512
           A+AF ++ T+    I +MKNLR+C DCH+F++L S++  R  I+RD  RFHHF+SG CSC
Sbjct: 595 ALAFSLLTTNRDYTIKIMKNLRMCQDCHMFMRLASEVTGRVIIMRDNMRFHHFRSGACSC 654

Query: 513 KDYW 516
            D+W
Sbjct: 655 GDFW 658



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 123/279 (44%), Gaps = 40/279 (14%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCG-SVD-YGRKLFDQVPEKGLITWNAMISGYAQNG 127
           H   ++ GLD    +   L+    K G  +D Y R++ + V  +    W A+I GY   G
Sbjct: 70  HGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPVQFRNPFLWTAVIRGYTIEG 129

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVE-QQIQANGFGSNPFLN 186
                + +Y  M+   + P + TF  +L +C  +G  ++G +   Q  +  GF    ++ 
Sbjct: 130 KFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQFHAQTFRLRGF-CFVYVG 188

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL---------- 236
           N +I+MY +CG++  AR +FD MP + V+SWT +I  Y   G+ E A  L          
Sbjct: 189 NTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESLPTKDMV 248

Query: 237 ---------------------FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
                                FD M KSGIR D       +SAC+  G + K  +    +
Sbjct: 249 AWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGAS-KYADRAVQI 307

Query: 276 KNKYGLQPGPEHY---TCMVDLLGRAGQLNEALELIESM 311
             K G  P  +H    + ++D+  + G + EA+ +  SM
Sbjct: 308 AQKSGYSPS-DHVVIGSALIDMYSKCGNVEEAVNVFVSM 345



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 117/238 (49%), Gaps = 12/238 (5%)

Query: 4   ESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL 63
           ES+ +  + V + A+++G+  N+   EA+  F +M + G+  + VT+   +  C   G  
Sbjct: 240 ESLPTKDM-VAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGAS 298

Query: 64  WLGMCCHCICVKFGLDLD--FSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMIS 121
                   I  K G        +G+ L+ MY KCG+V+    +F  +  K + ++++MI 
Sbjct: 299 KYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMIL 358

Query: 122 GYAQNGLATHVLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           G A +G A   L+L+  M     + P+ VTFVG L++C+H G    G +V   +    FG
Sbjct: 359 GLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQT-FG 417

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGM---PRKTVVSWTAIIGGYGIHGHGEVA 233
             P  ++   ++++  R G L++A  +   M   P   V  W A++G   IH + ++A
Sbjct: 418 VEPTRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGV--WGALLGACRIHNNPDIA 473


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/517 (39%), Positives = 306/517 (59%), Gaps = 22/517 (4%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWL---GMCC 69
           V +NA++SGY  +    + + LF  M +QG   +  T+  +L  C   G+L+    G   
Sbjct: 490 VAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTC---GFLFAINQGKQV 546

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   +K G DLD  V + ++ MYVKCG +   +  FD +P    + W  +ISG  +NG  
Sbjct: 547 HAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEE 606

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF----GSNPFL 185
              L ++ +M+ +GV PD  T   +  + + L A    LE  +QI AN       S+PF+
Sbjct: 607 ERALHVFSQMRLMGVLPDEFTIATLAKASSCLTA----LEQGRQIHANALKLNCTSDPFV 662

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
             +L++MYA+CG++  A  +F  +    + +W A++ G   HG G+ A+QLF +M   GI
Sbjct: 663 GTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGI 722

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
           +PD   F+ VLSACSH+GL  +  +Y   M   YG++P  EHY+C+ D LGRAG + EA 
Sbjct: 723 KPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAE 782

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR 365
            LI+SM +E   +++  LL AC++  + E  +    K+++LEP+++  YVLLSN+Y+ A 
Sbjct: 783 NLIDSMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAAS 842

Query: 366 NLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD------K 419
             D +   R MM+  ++KKDPG+S++E+K ++HLF+V DR++ QT  IY+ +       K
Sbjct: 843 KWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHLFVVDDRSNPQTELIYKKVKDMIRDIK 902

Query: 420 LENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDC 479
            E  V E D T    ++  EE       HSEKLA+AFG+++T P T I V+KNLR+CGDC
Sbjct: 903 QEGYVPETDFTLVDVEE--EEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDC 960

Query: 480 HLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           H  +K +SK+ DR+ ++RDA RFH FK G CSC DYW
Sbjct: 961 HNAMKYISKVYDREIVLRDANRFHRFKDGICSCGDYW 997



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 159/320 (49%), Gaps = 12/320 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           +  N ++SGY+     S  +  F  M E  +E + VT + +L   V    L LG   HC+
Sbjct: 288 ISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCM 347

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K GLDL  +V N L+ MY K   +   R +F+ + E+ LI+WN++I+G AQ+ L    
Sbjct: 348 ALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEA 407

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN----PFLNNA 188
           + L+ ++   G+ PD  T   VL + + L     GL + +QI  +   +N     F++ A
Sbjct: 408 VCLFMQLLRCGLKPDHYTMTSVLKAASSLPE---GLSLSKQIHVHAIKTNNVADSFVSTA 464

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           LI+ Y+R   +K+A  +F G     +V+W A++ GY     G   ++LF  M K G R D
Sbjct: 465 LIDAYSRNRCMKEAEVLF-GRNNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSD 523

Query: 249 GTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
                +VL  C      ++G + + Y +K+ Y L       + ++D+  + G ++ A   
Sbjct: 524 DFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVS--SGILDMYVKCGDMSAAQFA 581

Query: 308 IESMLVEPDGAVWGALLGAC 327
            +S+ V PD   W  L+  C
Sbjct: 582 FDSIPV-PDDVAWTTLISGC 600



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 149/321 (46%), Gaps = 20/321 (6%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD-PGYLWLGMCCHC 71
           + +N++I+G   + L  EAV LF ++   G++ +  TM  +L      P  L L    H 
Sbjct: 389 ISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHV 448

Query: 72  ICVKFGLDLDFSVGNCLMTMY-----VKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQN 126
             +K     D  V   L+  Y     +K   V +GR  FD      L+ WNAM+SGY Q+
Sbjct: 449 HAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGRNNFD------LVAWNAMMSGYTQS 502

Query: 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
                 LEL+  M   G   D  T   VL +C  L A + G +V      +G+  + +++
Sbjct: 503 HDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVS 562

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           + +++MY +CG++  A+  FD +P    V+WT +I G   +G  E A+ +F +M   G+ 
Sbjct: 563 SGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVL 622

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA-- 304
           PD     ++  A S     ++G +  +    K      P   T +VD+  + G +++A  
Sbjct: 623 PDEFTIATLAKASSCLTALEQGRQ-IHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYC 681

Query: 305 -LELIESMLVEPDGAVWGALL 324
             + IE M +      W A+L
Sbjct: 682 LFKRIEMMNI----TAWNAML 698



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 100/191 (52%), Gaps = 5/191 (2%)

Query: 63  LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISG 122
           L LG C H   +    + +  + N L++MY KCGS+ Y R++FD++PE+ L++WN++++ 
Sbjct: 62  LMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAA 121

Query: 123 YAQN--GLATHVLE---LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
           YAQ+  G+  +V E   L+R ++   V    +T   +L  C H G               
Sbjct: 122 YAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKI 181

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
           G   + F+  AL+N+Y + G +K+ R +F+ MP + VV W  ++  Y   G  E A+ L 
Sbjct: 182 GLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLS 241

Query: 238 DEMLKSGIRPD 248
                SG+ P+
Sbjct: 242 SAFHTSGLHPN 252



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 107/250 (42%), Gaps = 37/250 (14%)

Query: 13  VCYNALISGYVLNSL-----VSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           V +N++++ Y  +S      V EA  LF  +R+  V  + +T+  +L +C+  GY+    
Sbjct: 113 VSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASE 172

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
             H    K GLD D  V   L+ +Y+K G V  GR LF+++P + ++ WN M+  Y + G
Sbjct: 173 SFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMG 232

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
                ++L     + G+ P+ +T                 L +  +I  +          
Sbjct: 233 FKEEAIDLSSAFHTSGLHPNEIT-----------------LRLLSRISGDD--------- 266

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
                 +  G +K      D      ++S   I+ GY   G     ++ F +M++S +  
Sbjct: 267 ------SEAGQVKSFENGNDASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLEC 320

Query: 248 DGTAFVSVLS 257
           D   F+ VL+
Sbjct: 321 DQVTFILVLA 330



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 105/248 (42%), Gaps = 32/248 (12%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N ++  Y+      EA+ L       G+  N +T+  L  I  D             
Sbjct: 219 VLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLLSRISGDDS----------- 267

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             + G    F  GN                   D      +I+ N ++SGY   G  + +
Sbjct: 268 --EAGQVKSFENGN-------------------DASAVSEIISRNKILSGYLHAGQYSAL 306

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+ + +M    +  D VTF+ VL++   L + ++G +V       G      ++N+LINM
Sbjct: 307 LKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINM 366

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +   +  AR +F+ M  + ++SW ++I G         AV LF ++L+ G++PD    
Sbjct: 367 YCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTM 426

Query: 253 VSVLSACS 260
            SVL A S
Sbjct: 427 TSVLKAAS 434


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/548 (38%), Positives = 310/548 (56%), Gaps = 36/548 (6%)

Query: 5   SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPIC-VDPGYL 63
           S +     V +NALISG+       EA   F  M   G     VT + +L  C    G +
Sbjct: 102 SERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDV 161

Query: 64  WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKC---------------------------- 95
            LGM  H   V  G+  D  V N L+ MY +C                            
Sbjct: 162 LLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGL 221

Query: 96  ---GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFV 152
              G VD  R LF ++PE+  ++W AMI GY Q       LE++REM+   V  D  T V
Sbjct: 222 TRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMV 281

Query: 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK 212
            V+++CA LGA  +G  V   +   G   + F+ NALI+MY++CG++++A  +F  M  +
Sbjct: 282 SVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHR 341

Query: 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF 272
              +WTAII G  ++G+GE A+++F  M+     PD   F+ VL+AC+HAGL DKG E+F
Sbjct: 342 DKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFF 401

Query: 273 YGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKN 332
             M+  Y + P   HY C++DL GRAG++ EAL+ I+ M + P+  +WG LL AC++H N
Sbjct: 402 LSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGN 461

Query: 333 VELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVE 392
            E+ EL   ++++++P N+  Y LLSNIY++    + + R+R  + E+ +KK+PG S +E
Sbjct: 462 SEIGELVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIE 521

Query: 393 LKGRVHLFMVGDRNHHQTVEIY----RMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEVH 448
           + G +H F+ GD++H  + EIY     +++ L N+    D T+   +   EE       H
Sbjct: 522 MNGIIHEFVAGDQSHPMSKEIYCKLESIINDLNNVGYFPDVTEVFVEVAEEEKQKVLFWH 581

Query: 449 SEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSG 508
           SEKLAIAF ++++ P T I ++KNLR+C DCH  IKL+S++  R+ +VRD TRFHHF+ G
Sbjct: 582 SEKLAIAFALLSSEPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHG 641

Query: 509 FCSCKDYW 516
           FCSCKDYW
Sbjct: 642 FCSCKDYW 649



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 155/362 (42%), Gaps = 37/362 (10%)

Query: 18  LISGYVLNSLVS---EAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           L+ G     LV+   +AV+ + +M  +G   ++ T   LL               H   V
Sbjct: 11  LLEGIPRRCLVAAREDAVAGYARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVV 70

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           KFG+  +  V   L+T Y   G     R L  +      + WNA+ISG+ +         
Sbjct: 71  KFGMGRNAHVATSLVTAYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACC 130

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAH-LGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
            + +M   G  P  VT+V VLS+C    G   +G++V  ++  +G   +  + NAL++MY
Sbjct: 131 SFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMY 190

Query: 194 ARCGNLKKARAIFDG-------------------------------MPRKTVVSWTAIIG 222
           A C +++ A  +FDG                               MP +  VSWTA+I 
Sbjct: 191 AECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMID 250

Query: 223 GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQ 282
           GY        A+++F EM  S +  D    VSV++AC+  G  + G E+     ++ G++
Sbjct: 251 GYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMG-EWVRVYMSRQGIK 309

Query: 283 PGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGK 342
                   ++D+  + G +  AL++ + M    D   W A++    ++   E A   F +
Sbjct: 310 MDAFVGNALIDMYSKCGSIERALDVFKDMH-HRDKFTWTAIILGLAVNGYGEEAIEMFHR 368

Query: 343 VI 344
           +I
Sbjct: 369 MI 370


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/508 (37%), Positives = 297/508 (58%), Gaps = 4/508 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + ++I+GYV +    EA++ F +M++ GV  +++ +      C     +  G+  H  
Sbjct: 413 VSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHAR 472

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               G   D S+ N L+ +Y +CG  +    LF ++  K  ITWN +ISG+ Q+ L    
Sbjct: 473 VYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQA 532

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L ++ +M   G   +  TF+  +S+ A+L     G +V  +    G  S   + NALI++
Sbjct: 533 LMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISL 592

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CG+++ A+ IF  M  +  VSW  II     HG G  A+ LFD+M + G++P+   F
Sbjct: 593 YGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTF 652

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + VL+ACSH GL ++GL YF  M N YGL P P+HY C+VD+LGRAGQL+ A   ++ M 
Sbjct: 653 IGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMP 712

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           +  +  +W  LL ACK+HKN+E+ ELA   +++LEP ++  YVLLSN Y+         +
Sbjct: 713 ITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQ 772

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML----DKLENLVQEHD 428
           VR MM++R ++K+PG S++E+K  VH F VGDR H  + +IY+ L    D+L  +  + +
Sbjct: 773 VRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQE 832

Query: 429 GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
                 +K  E+      VHSEKLA+AFG++   P   + V+KNLR+C DCH ++K  S+
Sbjct: 833 NPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKFTSE 892

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +  R+ ++RD  RFHHF SG CSC DYW
Sbjct: 893 VTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 167/318 (52%), Gaps = 2/318 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N ++  Y   S ++++  +FG+M+  G+  N  T  C+L  C   G + LG   H +
Sbjct: 312 VLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSL 371

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G + D  V   L+ MY K   +D  RK+ + + ++ +++W +MI+GY Q+      
Sbjct: 372 SIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEA 431

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L  ++EM+  GV PD +      S+CA + A   GL++  ++  +G+ ++  + N L+N+
Sbjct: 432 LATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNL 491

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YARCG  ++A ++F  +  K  ++W  +I G+G     E A+ +F +M ++G + +   F
Sbjct: 492 YARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTF 551

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +S +SA ++     +G +  +G   K G     E    ++ L G+ G + +A ++I S +
Sbjct: 552 ISAISALANLADIKQGKQ-VHGRAVKTGHTSETEVANALISLYGKCGSIEDA-KMIFSEM 609

Query: 313 VEPDGAVWGALLGACKIH 330
              +   W  ++ +C  H
Sbjct: 610 SLRNEVSWNTIITSCSQH 627



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 156/331 (47%), Gaps = 2/331 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N LISG+        A+ +F +M+  G+  + VT+  LL  C   G L  G   H  
Sbjct: 211 VTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSY 270

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G+  D+     L+ +YVKCG ++    +F+      ++ WN M+  Y Q       
Sbjct: 271 LLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKS 330

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            E++ +M++ G+ P+  T+  +L +C   G   +G ++      NGF S+ +++  LI+M
Sbjct: 331 FEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDM 390

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++   L KAR I + + ++ VVSWT++I GY  H   E A+  F EM   G+ PD    
Sbjct: 391 YSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGL 450

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S  SAC+      +GL+  +      G       +  +V+L  R G+  EA  L    +
Sbjct: 451 ASAASACAGIKAMRQGLQ-IHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFRE-I 508

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKV 343
              D   W  L+      +  E A + F K+
Sbjct: 509 DHKDEITWNGLISGFGQSRLYEQALMVFMKM 539



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 171/398 (42%), Gaps = 37/398 (9%)

Query: 19  ISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLW-LGMCCHCICVKFG 77
           ++ +++     + +SL          + S  + C L  C   G  W L +  H   V  G
Sbjct: 14  LAKFIVPDNPEKILSLVAAKASHHRALGSADLTCALQACRGRGNRWPLVLEIHATSVVRG 73

Query: 78  LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYR 137
           L  D  +GN L+ +Y K G V   R++F ++  +  ++W AM+SGYAQ GL      LY 
Sbjct: 74  LGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYS 133

Query: 138 EMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG 197
           +M    V P       VLS+C      + G  +  Q+    F S  F+ NALI +Y   G
Sbjct: 134 QMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFG 193

Query: 198 NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257
           + K A  +F  M     V++  +I G+   GHGE A+Q+FDEM  SG+RPD     S+L+
Sbjct: 194 SFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLA 253

Query: 258 ACSHAGLTDKGLEYF-----YGMKNKY-------------------------GLQPGPEH 287
           AC+  G   KG +        GM   Y                         G +     
Sbjct: 254 ACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVL 313

Query: 288 YTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGACKIHKNVELAELAFGKVI 344
           +  M+   G+   L ++ E+   M    + P+   +  +L  C     +EL E      I
Sbjct: 314 WNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSI 373

Query: 345 KLEPMNTGYYV--LLSNIYSEARNLDGIMRVRMMMRER 380
           K     +  YV  +L ++YS+ R LD   ++  M+ +R
Sbjct: 374 K-NGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKR 410



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 157/343 (45%), Gaps = 4/343 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF E     H  V + A++SGY    L  EA  L+ +M    V      +  +L  C   
Sbjct: 100 VFKELSSRDH--VSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKG 157

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
                G   H    K     +  VGN L+ +Y+  GS     ++F  +     +T+N +I
Sbjct: 158 KLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLI 217

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SG+AQ G     L+++ EM+  G+ PD VT   +L++CA +G    G ++   +   G  
Sbjct: 218 SGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMS 277

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            +     +L+++Y +CG+++ A  IF+   R  VV W  ++  YG       + ++F +M
Sbjct: 278 FDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQM 337

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
             +GI P+   +  +L  C+  G  + G E  + +  K G +        ++D+  +   
Sbjct: 338 QATGIHPNKFTYPCILRTCTCTGQIELG-EQIHSLSIKNGFESDMYVSGVLIDMYSKYRC 396

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
           L++A +++E ML + D   W +++     H   E A   F ++
Sbjct: 397 LDKARKILE-MLEKRDVVSWTSMIAGYVQHDFCEEALATFKEM 438


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/509 (38%), Positives = 296/509 (58%), Gaps = 5/509 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V YN +ISGY  +     A  LF +++    +        +L I  +     +G   H  
Sbjct: 277 VSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQ 336

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +    D +  VGN L+ MY KCG  +    +F  +  +  + W AMIS Y Q G     
Sbjct: 337 TIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEG 396

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+L+ +M+   V  D  TF  +L + A + + S+G ++   I  +GF SN F  +AL+++
Sbjct: 397 LQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDV 456

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG++K A   F  MP + +VSW A+I  Y  +G  E  ++ F EM+ SG++PD  +F
Sbjct: 457 YAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSF 516

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + VLSACSH+GL ++GL +F  M   Y L P  EHY  +VD+L R+G+ NEA +L+  M 
Sbjct: 517 LGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMP 576

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPM-NTGYYVLLSNIYSEARNLDGIM 371
           ++PD  +W ++L AC+IHKN ELA  A  ++  +E + +   YV +SNIY+ A   + + 
Sbjct: 577 IDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVS 636

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----H 427
           +V   MR+R +KK P YS+VE+K   H+F   DR H Q  EI + +D L   ++E     
Sbjct: 637 KVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKP 696

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           D +     ++ +  +   + HSE+LAIAF +I+T  G+ I+VMKNLR C DCH  IK++S
Sbjct: 697 DTSCALHNEDEKFKVESLKYHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVIS 756

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KIV R+  VRD+TRFHHF+ GFCSC D+W
Sbjct: 757 KIVGREITVRDSTRFHHFRDGFCSCGDFW 785



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 165/347 (47%), Gaps = 12/347 (3%)

Query: 16  NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVK 75
           N L+  Y  ++ +  A  LF +M E    I+S T   +L   +    + LG   H   +K
Sbjct: 183 NTLVDSYCKSNRLDLACQLFKEMPE----IDSFTFAAVLCANIGLDDIVLGQQIHSFVIK 238

Query: 76  FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLEL 135
                +  V N L+  Y K  SV   RKLFD++PE+  +++N +ISGYA +G   +  +L
Sbjct: 239 TNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDL 298

Query: 136 YREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR 195
           +RE++          F  +LS  ++     +G ++  Q       S   + N+L++MYA+
Sbjct: 299 FRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAK 358

Query: 196 CGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSV 255
           CG  ++A  IF  +  ++ V WTA+I  Y   G  E  +QLF++M ++ +  D   F S+
Sbjct: 359 CGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASL 418

Query: 256 LSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEP 315
           L A +       G +  +    K G        + ++D+  + G + +A++  + M   P
Sbjct: 419 LRASASIASLSLGKQ-LHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEM---P 474

Query: 316 DGAV--WGALLGACKIHKNVELAELAFGKVI--KLEPMNTGYYVLLS 358
           D  +  W A++ A   +   E    +F +++   L+P +  +  +LS
Sbjct: 475 DRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLS 521



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 6/139 (4%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N +++ YVK G++   RKLFD + E+  +TW  +I GY+Q        EL+ +M+  G  
Sbjct: 82  NMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTE 141

Query: 146 PDAVTFVGVLSSCAHLGAHSVG---LEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202
           PD VTFV +LS C     H +G    +V+ QI   G+ S   + N L++ Y +   L  A
Sbjct: 142 PDYVTFVTLLSGC---NGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLA 198

Query: 203 RAIFDGMPRKTVVSWTAII 221
             +F  MP     ++ A++
Sbjct: 199 CQLFKEMPEIDSFTFAAVL 217



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 103/215 (47%), Gaps = 18/215 (8%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           N    N +I+ Y + GNL +AR +FDGM  +T V+WT +IGGY      + A +LF +M 
Sbjct: 77  NTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQ 136

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301
           + G  PD   FV++LS C+   + ++ +        K G          +VD   ++ +L
Sbjct: 137 RCGTEPDYVTFVTLLSGCNGHEMGNQ-ITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRL 195

Query: 302 NEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY--VLLSN 359
           + A +L + M  E D   + A+L A     N+ L ++  G+ I    + T +   V +SN
Sbjct: 196 DLACQLFKEM-PEIDSFTFAAVLCA-----NIGLDDIVLGQQIHSFVIKTNFVWNVFVSN 249

Query: 360 ----IYSEARNLDGIMRVRMMMRERRLKKDPGYSY 390
                YS+    D ++  R +  E  + +  G SY
Sbjct: 250 ALLDFYSKH---DSVIDARKLFDE--MPEQDGVSY 279


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/510 (38%), Positives = 308/510 (60%), Gaps = 7/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++  GY  ++   +A+SLF K     +  +  T   LL  CV       G   HC+
Sbjct: 93  VLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAKAFQQGKQLHCL 152

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K GL+ +  V   L+ MY  C  VD  +++FD++ E  ++++NA+I+GYA++      
Sbjct: 153 AIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIITGYARSSRPNEA 212

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+R++++  + P+ VT + VLSSCA LGA  +G  + + ++ NG      +N ALI+M
Sbjct: 213 LSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGLDKYVKVNTALIDM 272

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG+L  A ++F+ M  +   +W+A+I  Y +HG G+  + +F+EM ++ ++PD   F
Sbjct: 273 YAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITF 332

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + +L ACSH GL D+G  YFY M   YG+ PG +HY CMVDLLGRAG L+EA + I+ + 
Sbjct: 333 LGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELP 392

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           ++P   +W  LL +C  H N+ELA+    ++++L+  + G YV+LSN+ + A   + +  
Sbjct: 393 IKPTPILWRTLLSSCSSHGNLELAKQVMNQILELDDSHGGDYVILSNLCARAGKWEDVDT 452

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLEN------LVQE 426
           +R +M  +   K PG S +E+   VH F  GD  H+ +  ++R LD+L         V +
Sbjct: 453 LRKLMIHKGAVKIPGCSSIEVDNVVHEFFSGDGVHYVSTALHRALDELVKELKSVGYVPD 512

Query: 427 HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
                  D ++ E+ +     HSEKLAI+FG++NT PGT I V+KNLR+CGDCH   KL+
Sbjct: 513 TSLVVHPDMEDEEKEIT-LRYHSEKLAISFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLI 571

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           S ++DR+ I+RD  RFHHFK G CSC DYW
Sbjct: 572 SSLIDREIILRDVQRFHHFKDGKCSCGDYW 601



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 121/235 (51%), Gaps = 2/235 (0%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
            S+DY  +LF+ +P+  ++ +N+M  GY+++      + L+ +  +  + PD  TF  +L
Sbjct: 75  ASMDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLL 134

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
            +C    A   G ++       G   NP++   LINMYA C ++  A+ +FD +    VV
Sbjct: 135 KACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVV 194

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           S+ AII GY        A+ LF ++    ++P+    +SVLS+C+  G  D G ++ +  
Sbjct: 195 SYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLG-KWIHEY 253

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
             K GL    +  T ++D+  + G L+ A+ + ESM V  D   W A++ A  +H
Sbjct: 254 VKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVR-DTQAWSAMIVAYAMH 307


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/525 (40%), Positives = 314/525 (59%), Gaps = 15/525 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE   S+   V + ALI+GY  +    +A+ L  +M   G++ N  T+  LL      
Sbjct: 72  LFDE--MSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGV 129

Query: 61  GY--LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
           G   +  G   H +C+++G D +  V   ++ MY +C  ++  + +FD +  K  ++WNA
Sbjct: 130 GSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNA 189

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           +I+GYA+ G       L+  M    V P   T+  VL +CA +G+   G  V   +   G
Sbjct: 190 LIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWG 249

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
                F+ N L++MYA+ G+++ A+ +FD + ++ VVSW +++ GY  HG G+VA+Q F+
Sbjct: 250 EKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFE 309

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
           EML++ I P+   F+ VL+ACSHAGL D+G  YF  MK KY ++P   HY  MVDLLGRA
Sbjct: 310 EMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMK-KYNVEPQISHYVTMVDLLGRA 368

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           G L+ A++ I  M ++P  AVWGALLGAC++HKN+EL   A   + +L+    G +VLL 
Sbjct: 369 GHLDRAIQFISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLY 428

Query: 359 NIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD 418
           NIY+ A   +   +VR MM+E  +KK+P  S+VE++  VH+F+  D  H Q  EI+ M +
Sbjct: 429 NIYALAGRWNDAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQRREIHNMWE 488

Query: 419 KLENLVQEHDGTKRS-------DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMK 471
           ++ + ++E      S       DQ+  E  L   + HSEKLA+AF ++NT PG+ I + K
Sbjct: 489 QISDKIKEIGYVPDSSHVLLCMDQQEREAKL---QYHSEKLALAFALLNTPPGSTIRIKK 545

Query: 472 NLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           N+RICGDCH   K VSK+V+R+ IVRD  RFHHF  G CSC+DYW
Sbjct: 546 NIRICGDCHSAFKFVSKLVEREIIVRDTNRFHHFCDGACSCEDYW 590



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 164/310 (52%), Gaps = 6/310 (1%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           LL  C     L  G   H + +      D  + N L+ +Y KCG + Y RKLFD++  + 
Sbjct: 21  LLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRD 80

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSV--GLEV 170
           ++TW A+I+GY+Q+      L L  EM  +G+ P+  T   +L + + +G+  V  G ++
Sbjct: 81  VVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQL 140

Query: 171 EQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHG 230
                  G+ SN +++ A+++MYARC +L++A+ IFD M  K  VSW A+I GY   G G
Sbjct: 141 HGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQG 200

Query: 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC 290
           + A  LF  ML+  ++P    + SVL AC+  G  ++G ++ + +  K+G +        
Sbjct: 201 DKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQG-KWVHALMIKWGEKLVAFVGNT 259

Query: 291 MVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI--KLEP 348
           ++D+  ++G + +A ++ +  L + D   W ++L     H   ++A   F +++  ++ P
Sbjct: 260 LLDMYAKSGSIEDAKKVFDR-LAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAP 318

Query: 349 MNTGYYVLLS 358
            +  +  +L+
Sbjct: 319 NDITFLCVLT 328


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/526 (38%), Positives = 312/526 (59%), Gaps = 18/526 (3%)

Query: 1   VFDE-SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD 59
           VFD  S++S    + +N +I+GY  N    EA+ LF +M  +G ++   T+   L  C  
Sbjct: 113 VFDAMSVRSI---ISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAA 169

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              +      H I +K  LD    VG   + +Y KC  +     +F+ +PEK  +TW+++
Sbjct: 170 KYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSL 229

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
            +G+ QNGL   VL L++  +  G+     T   +LS+CA L     G +V   I  +GF
Sbjct: 230 FAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGF 289

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             N F+  +L+++YA+CG ++K+  +F  M  K VV W A+I  +  H H   A+ LF++
Sbjct: 290 HRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEK 349

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M + GI P+   ++S+LSACSH GL ++G  YF  + +    +P   HY+CMVD+LGR+G
Sbjct: 350 MQQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSG 409

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
           + +EA +L++ M  EP  ++WG+LLG+ +IHKN+ LA +A  ++ +LEP N G +VLLSN
Sbjct: 410 KTDEAWKLLDKMPFEPTASMWGSLLGSSRIHKNIRLARIAAEQLFRLEPENGGNHVLLSN 469

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
           +Y+ + N + ++  R  +R+   KK+ G S++E KG++H+F+ G+R H    ++Y   +K
Sbjct: 470 VYAASGNWENVVVARKYLRDSGAKKEMGRSWIEAKGKIHVFVAGEREHPGITDVY---NK 526

Query: 420 LENLVQEHDGTKRSDQKNSEEHLNDTEV---------HSEKLAIAFGIINTSPGTEIVVM 470
           LE +   H+  K S + N++  L+D            HSEKLA AFG+I+  P   I + 
Sbjct: 527 LEEIY--HEMRKISHRANTQCDLHDVHADQKEELLKHHSEKLAFAFGLISLPPNIPITIY 584

Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KNLRICGDCH F+K+VS I +RQ IVRD  RFHHFK G CSC D+W
Sbjct: 585 KNLRICGDCHSFMKIVSCITERQVIVRDINRFHHFKDGSCSCGDFW 630



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 155/323 (47%), Gaps = 18/323 (5%)

Query: 45  INSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKL 104
           I+  T+  LL +C     L +G  CH + + FGL  D    N L+ +Y KCG  D  R++
Sbjct: 54  IDVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRV 113

Query: 105 FDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA- 163
           FD +  + +I+WN MI+GY  N      L+L+  M   G      T    L +CA   A 
Sbjct: 114 FDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAI 173

Query: 164 ------HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
                 H++ +++          S+ F+  A +++YA+C  +K A  +F+ MP KT V+W
Sbjct: 174 IECKQLHTIAIKL-------ALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTW 226

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
           +++  G+  +G  E  + LF    + G++       S+LS C+   L  +G +  + +  
Sbjct: 227 SSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQ-VHAVIV 285

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
           K+G        T +VD+  + GQ+ ++ E+   M  E +  +W A++ +   H +   A 
Sbjct: 286 KHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADM-EEKNVVLWNAMIASFSRHAHSWEAM 344

Query: 338 LAFGKV--IKLEPMNTGYYVLLS 358
           + F K+  + + P    Y  +LS
Sbjct: 345 ILFEKMQQVGIFPNEVTYLSILS 367


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/509 (41%), Positives = 298/509 (58%), Gaps = 18/509 (3%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI-C 73
           +N +IS      L+ EA  LF  M E+          C+    +  GY+  G     + C
Sbjct: 138 WNTMISALAQVGLMGEARRLFSAMPEKN---------CVSWSAMVSGYVACGDLDAAVEC 188

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
                         ++T Y+K G V+   +LF ++  + L+TWNAMI+GY +NG A   L
Sbjct: 189 FYAAPMRSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGL 248

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
            L+R M   GV P+A++   VL  C++L A  +G +V Q +      S+     +L++MY
Sbjct: 249 RLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMY 308

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
           ++CG+LK A  +F  +PRK VV W A+I GY  HG G+ A++LFDEM K G++PD   FV
Sbjct: 309 SKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFV 368

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           +VL AC+HAGL D G++YF  M+  +G++  PEHY CMVDLLGRAG+L+EA++LI+SM  
Sbjct: 369 AVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPF 428

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
           +P  A++G LLGAC+IHKN+ LAE A   +++L+P     YV L+N+Y+     D +  +
Sbjct: 429 KPHPAIYGTLLGACRIHKNLNLAEFAAKNLLELDPTIATGYVQLANVYAAQNRWDHVASI 488

Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLEN------LVQEH 427
           R  M++  + K PGYS++E+   VH F   DR H +   I+  L  LE        V + 
Sbjct: 489 RRSMKDNNVVKIPGYSWIEINSVVHGFRSSDRLHPELASIHEKLKDLEKKMKLAGYVPDL 548

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           +       +  +E L     HSEKLAIAFG++    G  I V KNLR+CGDCH   K +S
Sbjct: 549 EFVLHDVGEELKEQL--LLWHSEKLAIAFGLLKVPLGVPIRVFKNLRVCGDCHSATKYIS 606

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            I  R+ IVRD TRFHHFK GFCSC+DYW
Sbjct: 607 TIEGREIIVRDTTRFHHFKDGFCSCRDYW 635



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 123/228 (53%), Gaps = 2/228 (0%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           S    V +NA+I+GYV N    + + LF  M E GV+ N++++  +L  C +   L LG 
Sbjct: 224 SMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGK 283

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
             H +  K  L  D + G  L++MY KCG +    +LF Q+P K ++ WNAMISGYAQ+G
Sbjct: 284 QVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHG 343

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN-GFGSNPFLN 186
                L L+ EMK  G+ PD +TFV VL +C H G   +G++    ++ + G  + P   
Sbjct: 344 AGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHY 403

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVA 233
             ++++  R G L +A  +   MP K   + +  ++G   IH +  +A
Sbjct: 404 ACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLNLA 451



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 105/250 (42%), Gaps = 41/250 (16%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140
           D +  N +++   + G +   R+LF  +PEK  ++W+AM+SGY   G     +E      
Sbjct: 134 DVASWNTMISALAQVGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVE------ 187

Query: 141 SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
               C  A     V++                               A+I  Y + G ++
Sbjct: 188 ----CFYAAPMRSVITW-----------------------------TAMITGYMKFGRVE 214

Query: 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
            A  +F  M  +T+V+W A+I GY  +G  E  ++LF  ML++G++P+  +  SVL  CS
Sbjct: 215 LAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCS 274

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320
           +      G +  + +  K  L       T +V +  + G L +A EL    +   D   W
Sbjct: 275 NLSALQLGKQ-VHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELF-IQIPRKDVVCW 332

Query: 321 GALLGACKIH 330
            A++     H
Sbjct: 333 NAMISGYAQH 342



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 20/181 (11%)

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH-GHGEVAVQLFDE 239
           +N   +N LI  Y RCG++  A  +F+ M  K+ V+W +I+  +    GH E A QLF++
Sbjct: 39  NNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFEK 98

Query: 240 MLKSGIRPDGTAFVSVLSAC--SHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
           +     +P+  ++ +++ AC   H G+ D    +F  M  K         +  M+  L +
Sbjct: 99  I----PQPNTVSY-NIMLACHWHHLGVHD-ARGFFDSMPLK-----DVASWNTMISALAQ 147

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF-----GKVIKLEPMNTG 352
            G + EA  L  +M  E +   W A++       +++ A   F       VI    M TG
Sbjct: 148 VGLMGEARRLFSAM-PEKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITG 206

Query: 353 Y 353
           Y
Sbjct: 207 Y 207


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/517 (40%), Positives = 308/517 (59%), Gaps = 25/517 (4%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPI--CVDPGYLWLGMCCH 70
           V + A+ISGYV N     A++LF +MR +GV  N  T   +L     V P  +      H
Sbjct: 362 VSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSPSQI------H 415

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
            + VK   +   SVG  L   Y K G  +   K+F+ + EK ++ W+AM+SGYAQ G   
Sbjct: 416 ALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIE 475

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA----NGFGSNPFLN 186
             ++++ ++   GV P+  TF  VL++CA   A +  +E  +Q  +    +GF +   ++
Sbjct: 476 GAVKIFLQLAKEGVEPNEFTFSSVLNACA---APTASVEQGKQFHSCSIKSGFSNALCVS 532

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           +AL+ MYA+ GN++ A  +F     + +VSW ++I GY  HG G+ ++++F+EM    + 
Sbjct: 533 SALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLE 592

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
            DG  F+ V+SAC+HAGL ++G  YF  M   Y + P  EHY+CMVDL  RAG L +A++
Sbjct: 593 LDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMD 652

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366
           LI  M       +W  LL AC++H NV+L ELA  K+I L+P ++  YVLLSNIY+ A N
Sbjct: 653 LINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGN 712

Query: 367 LDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE 426
                +VR +M  +++KK+ GYS++E+K +   FM GD +H Q+  IY  L++L   +++
Sbjct: 713 WQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKD 772

Query: 427 ---HDGTKRSDQKNSEEHLNDTEV----HSEKLAIAFGIINTSPGTEIVVMKNLRICGDC 479
              +  TK       EEH    EV    HSE+LAIAFG+I T PGT I ++KNLR+CGDC
Sbjct: 773 AGYYPDTKYVLHDVEEEH---KEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDC 829

Query: 480 HLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           H  IKL+SKI  R  +VRD+ RFHHFK G CSC DYW
Sbjct: 830 HTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 866



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 140/249 (56%), Gaps = 6/249 (2%)

Query: 16  NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLW---LGMCCHCI 72
           N L+  +  N    EA++LF  +R  G   +  ++ C+L +C   G L+   +G   HC 
Sbjct: 61  NHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVC---GCLFDRIVGKQVHCQ 117

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
           C+K G   D SVG  L+ MY+K  SV+ G ++FD++  K +++W ++++GY QNGL    
Sbjct: 118 CIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQA 177

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+L+ +M+  G+ P+  TF  VL   A  GA   G++V   +  +G  S  F+ N+++NM
Sbjct: 178 LKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNM 237

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++   +  A+A+FD M  +  VSW ++I G+  +G    A +LF  M   G++   T F
Sbjct: 238 YSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIF 297

Query: 253 VSVLSACSH 261
            +V+  C++
Sbjct: 298 ATVIKLCAN 306



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 179/361 (49%), Gaps = 26/361 (7%)

Query: 1   VFDE-SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD 59
           VFDE  +K+    V + +L++GY  N L  +A+ LF +M+ +G++ N  T   +L     
Sbjct: 149 VFDEMRVKNV---VSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAA 205

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
            G +  G+  H + +K GLD    VGN ++ MY K   V   + +FD +  +  ++WN+M
Sbjct: 206 DGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSM 265

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I+G+  NGL     EL+  M+  GV      F  V+  CA++   S   ++  Q+  NG 
Sbjct: 266 IAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGS 325

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGM-PRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
             +  +  AL+  Y++C  +  A  +F  M   + VVSWTAII GY  +G  + A+ LF 
Sbjct: 326 DFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFC 385

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
           +M + G+RP+   + ++L+A  +A ++   +   + +  K   +  P   T + D   + 
Sbjct: 386 QMRREGVRPNHFTYSTILTA--NAAVSPSQI---HALVVKTNYENSPSVGTALSDSYSKI 440

Query: 299 GQLNEALELIESMLVEPDGAVWGALL----------GACKI-----HKNVELAELAFGKV 343
           G  NEA ++ E ++ E D   W A+L          GA KI      + VE  E  F  V
Sbjct: 441 GDANEAAKIFE-LIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSV 499

Query: 344 I 344
           +
Sbjct: 500 L 500



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 128/263 (48%), Gaps = 19/263 (7%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           + ++LFD+ P++GL   N ++  +++N      L L+  ++  G   D  +   VL  C 
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCG 103

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
            L    VG +V  Q    GF  +  +  +L++MY +  +++    +FD M  K VVSWT+
Sbjct: 104 CLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTS 163

Query: 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279
           ++ GY  +G  E A++LF +M   GI+P+   F +VL   +  G  +KG++  + M  K 
Sbjct: 164 LLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ-VHTMVIKS 222

Query: 280 GLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAV-WGALLGACKIH-------- 330
           GL         MV++  ++  +++A  + +SM  E   AV W +++     +        
Sbjct: 223 GLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSM--ENRNAVSWNSMIAGFVTNGLDLEAFE 280

Query: 331 -------KNVELAELAFGKVIKL 346
                  + V+L +  F  VIKL
Sbjct: 281 LFYRMRLEGVKLTQTIFATVIKL 303


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/506 (40%), Positives = 298/506 (58%), Gaps = 4/506 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N +I GY ++     A++L+  M   G+  NS T   +L  C     L  G   H   V
Sbjct: 75  WNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIV 134

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K GLD +  + N L+ +Y  CG +DY   +FD++PE    +W+ M+SGYAQNG A   L+
Sbjct: 135 KVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALK 194

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+REM++  V  DA T   V+  C  LGA  +G  V   +   G   +  L  AL+ MY+
Sbjct: 195 LFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMYS 254

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG+L  A  +F GM  + V +W+ +I GY IHGHGE A+QLFD M +S   P+   F S
Sbjct: 255 KCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTS 314

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VLSACSH+GL +KG + F  M  +Y + P  +HY CMVDL  RAG +  A + I++M +E
Sbjct: 315 VLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIE 374

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
           P+  +W  LLGACK H   +L E    K++KL+P +   YVL+SN+Y+       + +VR
Sbjct: 375 PNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPENYVLVSNVYASLGRWSSVCQVR 434

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD----KLENLVQEHDGT 430
            +M+++  KK  G+S +E+   VH F++GD +H +  +IY ML     KL+ +   +   
Sbjct: 435 SLMKDKAPKKQHGWSSIEINFMVHKFIMGDESHPEREKIYGMLHQMARKLKQVGHVNSTV 494

Query: 431 KRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIV 490
                 + EE      +HSE+LAIA+G+++T  G+ I ++KNLR+C DCH  IKL+S++ 
Sbjct: 495 DVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIRIVKNLRVCRDCHEVIKLISEVY 554

Query: 491 DRQFIVRDATRFHHFKSGFCSCKDYW 516
           +R+ IVRD  RFHHF+   CSC DYW
Sbjct: 555 NREIIVRDRVRFHHFRERGCSCNDYW 580



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 113/245 (46%), Gaps = 2/245 (0%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
           G V Y  ++F       L  WN +I GY+ +      + LYR+M   G+ P++ TF  VL
Sbjct: 55  GHVAYAHRIFSCTHHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVL 114

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
            +C  L     G E+  QI   G      L N LI +YA CG +  A  +FD MP     
Sbjct: 115 KACCKLLRLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSA 174

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           SW+ ++ GY  +G    A++LF EM    +  D     SV+  C   G  D G ++ +  
Sbjct: 175 SWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLG-KWVHSY 233

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVEL 335
            +K G++      T +V +  + G L+ AL++ + M  E D   W  ++    IH + E 
Sbjct: 234 MDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGM-AERDVTAWSTMIAGYAIHGHGEK 292

Query: 336 AELAF 340
           A   F
Sbjct: 293 ALQLF 297


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/548 (38%), Positives = 315/548 (57%), Gaps = 37/548 (6%)

Query: 5   SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLW 64
            I++ +L V +N LI  +   +  S+A   + +M +  +  +++T   L+    +   + 
Sbjct: 76  QIQNPNLFV-FNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVL 134

Query: 65  LGMCCHCICVKFGLDLDFSVGNCLMTMYV------------------------------- 93
           +G   H   V+FG   D  V N L+ MY                                
Sbjct: 135 VGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYC 194

Query: 94  KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVG 153
           KCG V+  R++FD++P + L TW+ MI+GYA+N      ++L+  MK  GV  +    V 
Sbjct: 195 KCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVS 254

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
           V+SSCAHLGA   G    + +  +    N  L  AL++M+ RCG+++KA  +F+G+P   
Sbjct: 255 VISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETD 314

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
            +SW++II G  +HGH   A+  F +M+  G  P    F +VLSACSH GL +KGLE + 
Sbjct: 315 SLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYE 374

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNV 333
            MK  +G++P  EHY C+VD+LGRAG+L EA   I  M V+P+  + GALLGACKI+KN 
Sbjct: 375 NMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNT 434

Query: 334 ELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVEL 393
           E+AE     +IK++P ++GYYVLLSNIY+ A   D I  +R MM+E+ +KK PG+S +E+
Sbjct: 435 EVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEI 494

Query: 394 KGRVHLFMVGDRNHHQTVEIYR-----MLDKLENLVQEHDGTKRSDQKNSEEHLNDTEVH 448
            G+++ F +GD   H  +   R     +L K+  +  + +        + EE  +   +H
Sbjct: 495 DGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMH 554

Query: 449 SEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSG 508
           SEKLAIA+G++ T PGT I ++KNLR+C DCH   KL+S++  R+ IVRD  RFHHF++G
Sbjct: 555 SEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNG 614

Query: 509 FCSCKDYW 516
            CSC+DYW
Sbjct: 615 VCSCRDYW 622



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 131/295 (44%), Gaps = 41/295 (13%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           Y   +F Q+    L  +N +I  ++     +     Y +M    + PD +TF  ++ + +
Sbjct: 69  YAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASS 128

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA------------------------- 194
            +    VG +   QI   GF ++ ++ N+L++MYA                         
Sbjct: 129 EMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTS 188

Query: 195 ------RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
                 +CG ++ AR +FD MP + + +W+ +I GY  +   E A+ LF+ M + G+  +
Sbjct: 189 MVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVAN 248

Query: 249 GTAFVSVLSACSHAG---LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
            T  VSV+S+C+H G     ++  EY         L  G    T +VD+  R G + +A+
Sbjct: 249 ETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILG----TALVDMFWRCGDIEKAI 304

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE--PMNTGYYVLLS 358
            + E  L E D   W +++    +H +   A   F ++I L   P +  +  +LS
Sbjct: 305 HVFEG-LPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLS 358


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/543 (39%), Positives = 307/543 (56%), Gaps = 39/543 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N L+SG   +    +AV    +M  +G   ++  + C L    D G + +G   H  
Sbjct: 122 ITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGY 181

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFD---------------------QVPEK 111
            VK G  LD  V   L+ MY KCG  D   ++FD                     QV E 
Sbjct: 182 VVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEA 241

Query: 112 --------------GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
                          +++W ++++   QNG     ++L+REM+S G+ P++VT   VL +
Sbjct: 242 LRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPA 301

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
            A++ A   G          GF  + ++ +AL++MYA+CG ++ AR IF+ MP + VVSW
Sbjct: 302 FANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSW 361

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
            A+IGGY +HG  E AV+LF  M  S  +PD   F  VL ACS AG T++G  YF  M++
Sbjct: 362 NAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQH 421

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
           K+G+ P  EHY CMV LLGRAG+L++A ++I  M  EPDG +WG+LLG+C++H NV LAE
Sbjct: 422 KHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVLAE 481

Query: 338 LAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRV 397
           +A   + +LEP N G YVLLSNIY+  +  DG+ R+R MM+   LKK+ G S++E+K +V
Sbjct: 482 VAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSWIEIKNKV 541

Query: 398 HLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQ--KNSEEHLNDT--EVHSEKLA 453
           H+ + GD +H     I   L  L   ++       +D    + EE   D    VHSEKLA
Sbjct: 542 HMLLAGDSSHPMMAAITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQEKDDILSVHSEKLA 601

Query: 454 IAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCK 513
           +A G+I+TS GT + V+KNLRICGDCH  +K +S    R+  VRD  RFHHFK G CSC 
Sbjct: 602 VALGLISTSHGTPLQVIKNLRICGDCHEAMKFISSFERREIYVRDTNRFHHFKDGKCSCA 661

Query: 514 DYW 516
           DYW
Sbjct: 662 DYW 664



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 136/334 (40%), Gaps = 72/334 (21%)

Query: 77  GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY 136
           G+  D  V + L+  Y++ G+    R + D +P + ++ W+A+I+ +A +G A     L 
Sbjct: 50  GVSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLL 109

Query: 137 REMKSLGVCPDAVTFVGVLS------------------------------SCA-----HL 161
             M+S GV P+ +T+ G++S                              SCA      +
Sbjct: 110 ERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDV 169

Query: 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
           G  +VG ++   +   G   +  +  ALI+MY +CG   +   +FD      V S  A++
Sbjct: 170 GDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALV 229

Query: 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281
            G   +     A++LF E +  GI  +  ++ S+++ C   G   + ++ F  M+++ G+
Sbjct: 230 AGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSE-GI 288

Query: 282 QPGPEHYTC-----------------------------------MVDLLGRAGQLNEALE 306
           +P      C                                   +VD+  + G++ +A  
Sbjct: 289 EPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARM 348

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           + E+M    +   W A++G   +H   E A   F
Sbjct: 349 IFEAMPYR-NVVSWNAMIGGYAMHGEAENAVRLF 381


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/516 (40%), Positives = 297/516 (57%), Gaps = 73/516 (14%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISG------- 122
           +C+  K GL+ D  +G  L+ MY K G +   R++FD++P++ ++ WNAMI+G       
Sbjct: 138 YCMVEKGGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDP 197

Query: 123 ------------------------YAQNGLATHVLELYREMKSLGVC------------- 145
                                   YA NG    VLEL+ +MK   V              
Sbjct: 198 YVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVTWNVIIAAYMQNGH 257

Query: 146 -----------------PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
                            P++VTFV VL + A+L A   G+     I   GF SN  + N+
Sbjct: 258 AKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNS 317

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           LI+MYA+CG L  +  +F+ M  K  VSW A++ GY +HGHG+ A+ LF  M +S ++ D
Sbjct: 318 LIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQID 377

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
             +FVSVLSAC HAGL ++G + F+ M +KY ++P  EHY CMVDLLGRAG  +E L  I
Sbjct: 378 SVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFI 437

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
           + M VEPD  VWGALLG+C++H NV+L E+A   ++KLEP N  ++V+LS+IY+++    
Sbjct: 438 KVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWA 497

Query: 369 GIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY----RMLDKLENLV 424
              + R  M +  LKK PG S+VELK +VH F VGD++H Q   ++     +L+K+E + 
Sbjct: 498 DAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIG 557

Query: 425 QEHDGTKRSDQKNSEEHLNDTEV----HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCH 480
              D  +    +N EE   D E+    HSE+LAI F ++NT PG+ I ++KNLR+C DCH
Sbjct: 558 YVPD--RSCVLQNVEE--EDKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCH 613

Query: 481 LFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
              K +SKI  R+ IVRDATRFHHF+ G CSC DYW
Sbjct: 614 TTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 649



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 126/250 (50%), Gaps = 6/250 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +N +I+ Y+ N    EA+S F +MR +    NSVT + +LP          GM  H 
Sbjct: 242 NVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHA 301

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             ++ G   +  VGN L+ MY KCG +DY  KLF+++  K  ++WNAM+SGYA +G    
Sbjct: 302 CIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDR 361

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--AL 189
            + L+  M+   V  D+V+FV VLS+C H G    G ++   + ++ +   P L +   +
Sbjct: 362 AIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSM-SDKYHIKPDLEHYACM 420

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           +++  R G   +       MP +     W A++G   +H + ++     D ++K  + P 
Sbjct: 421 VDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVK--LEPR 478

Query: 249 GTAFVSVLSA 258
             A   VLS+
Sbjct: 479 NPAHFVVLSS 488



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 105/242 (43%), Gaps = 50/242 (20%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L +++ KC   D  R +FD  P    I WN+MI  Y ++      LE+Y  M        
Sbjct: 92  LYSLFHKC---DLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCM-------- 140

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
                                     ++  G   + F+   L++MY++ G+LK+AR +FD
Sbjct: 141 --------------------------VEKGGLERDVFIGAGLVDMYSKMGDLKRAREVFD 174

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            MP++ VV+W A+I G        VA ++FD+M    +  D  ++ ++++  +H G   +
Sbjct: 175 KMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQM----VDQDDVSWGTMMAGYAHNGCFVE 230

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE---PDGAVWGALL 324
            LE F  MK       G   +  ++    + G   EA+     M +E   P+   + ++L
Sbjct: 231 VLELFDKMK------LGNVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVL 284

Query: 325 GA 326
            A
Sbjct: 285 PA 286


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/509 (38%), Positives = 296/509 (58%), Gaps = 5/509 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V YN +ISGY  +     A  LF +++    +        +L I  +     +G   H  
Sbjct: 317 VSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQ 376

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +    D +  VGN L+ MY KCG  +    +F  +  +  + W AMIS Y Q G     
Sbjct: 377 TIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEG 436

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+L+ +M+   V  D  TF  +L + A + + S+G ++   I  +GF SN F  +AL+++
Sbjct: 437 LQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDV 496

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG++K A   F  MP + +VSW A+I  Y  +G  E  ++ F EM+ SG++PD  +F
Sbjct: 497 YAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSF 556

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + VLSACSH+GL ++GL +F  M   Y L P  EHY  +VD+L R+G+ NEA +L+  M 
Sbjct: 557 LGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMP 616

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPM-NTGYYVLLSNIYSEARNLDGIM 371
           ++PD  +W ++L AC+IHKN ELA  A  ++  +E + +   YV +SNIY+ A   + + 
Sbjct: 617 IDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVS 676

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----H 427
           +V   MR+R +KK P YS+VE+K   H+F   DR H Q  EI + +D L   ++E     
Sbjct: 677 KVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKP 736

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           D +     ++ +  +   + HSE+LAIAF +I+T  G+ I+VMKNLR C DCH  IK++S
Sbjct: 737 DTSCALHNEDEKFKVESLKYHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVIS 796

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KIV R+  VRD+TRFHHF+ GFCSC D+W
Sbjct: 797 KIVGREITVRDSTRFHHFRDGFCSCGDFW 825



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 173/351 (49%), Gaps = 8/351 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V YNA+I+GY  + L  +AV+LF +M+  G++    T   +L   +    + LG   H 
Sbjct: 215 SVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHS 274

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K     +  V N L+  Y K  SV   RKLFD++PE+  +++N +ISGYA +G   +
Sbjct: 275 FVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKY 334

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
             +L+RE++          F  +LS  ++     +G ++  Q       S   + N+L++
Sbjct: 335 AFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVD 394

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+CG  ++A  IF  +  ++ V WTA+I  Y   G  E  +QLF++M ++ +  D   
Sbjct: 395 MYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQAT 454

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F S+L A +       G +  +    K G        + ++D+  + G + +A++  + M
Sbjct: 455 FASLLRASASIASLSLGKQ-LHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEM 513

Query: 312 LVEPDGAV--WGALLGACKIHKNVELAELAFGKVI--KLEPMNTGYYVLLS 358
              PD  +  W A++ A   +   E    +F +++   L+P +  +  +LS
Sbjct: 514 ---PDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLS 561



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 159/331 (48%), Gaps = 14/331 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD  ++ T +T  +  LI GY   +   EA  LF +M+  G E + VT + LL  C   
Sbjct: 105 LFDGMVERTAVT--WTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGH 162

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
                        +K G D    VGN L+  Y K   +D   +LF ++PE   +++NAMI
Sbjct: 163 EMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMI 222

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSV--GLEVEQQIQANG 178
           +GY+++GL    + L+ EM++ G+ P   TF  VL  CA++G   +  G ++   +    
Sbjct: 223 TGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGLDDIVLGQQIHSFVIKTN 280

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
           F  N F++NAL++ Y++  ++  AR +FD MP +  VS+  II GY   G  + A  LF 
Sbjct: 281 FVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFR 340

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY---TCMVDLL 295
           E+  +        F ++LS  S+    + G +    +  +  +            +VD+ 
Sbjct: 341 ELQFTAFDRKQFPFATMLSIASNTLDWEMGRQ----IHAQTIVTTADSEILVGNSLVDMY 396

Query: 296 GRAGQLNEALELIESMLVEPDGAVWGALLGA 326
            + G+  EA E+I + L       W A++ A
Sbjct: 397 AKCGKFEEA-EMIFTNLTHRSAVPWTAMISA 426



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/184 (37%), Positives = 99/184 (53%), Gaps = 8/184 (4%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N +++ YVK G++   RKLFD + E+  +TW  +I GY+Q        EL+ +M+  G  
Sbjct: 87  NMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTE 146

Query: 146 PDAVTFVGVLSSCAHLGAHSVG---LEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202
           PD VTFV +LS C     H +G    +V+ QI   G+ S   + N L++ Y +   L  A
Sbjct: 147 PDYVTFVTLLSGC---NGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLA 203

Query: 203 RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262
             +F  MP    VS+ A+I GY   G  E AV LF EM  SG++P    F +VL  C++ 
Sbjct: 204 CQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANI 261

Query: 263 GLTD 266
           GL D
Sbjct: 262 GLDD 265



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 48/79 (60%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           N    N +I+ Y + GNL +AR +FDGM  +T V+WT +IGGY      + A +LF +M 
Sbjct: 82  NTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQ 141

Query: 242 KSGIRPDGTAFVSVLSACS 260
           + G  PD   FV++LS C+
Sbjct: 142 RCGTEPDYVTFVTLLSGCN 160


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/544 (38%), Positives = 304/544 (55%), Gaps = 39/544 (7%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           ++ +N++I  Y         V+ +  M   G   +  T   +L   V+   +W+G C H 
Sbjct: 136 SLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHG 195

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFD------------------------- 106
           + ++ GL  D  V   L+ +Y KCG ++   K+FD                         
Sbjct: 196 LILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDA 255

Query: 107 ------QVPEKGLITWNAMISGYAQNGLATHVLELYREM--KSLGVCPDAVTFVGVLSSC 158
                 ++P + +++W  MISGY+Q+GLA   L L+ EM  +  GV P+ VT + VL +C
Sbjct: 256 ALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPAC 315

Query: 159 AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR--KTVVS 216
           A L     G ++ +     G  SN  +  AL  MYA+CG+L  AR  FD + R  K +++
Sbjct: 316 AQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIA 375

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
           W  +I  Y  +GHG  AV  F EM+++GI+PD   F  +LS CSH+GL D GL+YF  M 
Sbjct: 376 WNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMS 435

Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELA 336
             Y + P  EHY C+ DLLGRAG+L EA +L+  M +    ++WG+LL AC+ H+N+E+A
Sbjct: 436 TTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMA 495

Query: 337 ELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGR 396
           E A  K+  LEP NTG YVLLSN+Y+EA     + ++R +++ +  KK PG S++E+ G+
Sbjct: 496 ETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGK 555

Query: 397 VHLFMVGDRNHHQTVEIYRMLDKLENLVQE----HDGTKRSDQKNSEEHLNDTEVHSEKL 452
            H+F+ GD +H Q  EIY  L+ L   ++      D +      + EE   +   HSEKL
Sbjct: 556 AHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKL 615

Query: 453 AIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSC 512
           A+AFGI+NT   T + V KNLRICGDCH  +  +S+I  R+ IVRD  RFHHFK G CSC
Sbjct: 616 AVAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSC 675

Query: 513 KDYW 516
            DYW
Sbjct: 676 GDYW 679



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 140/332 (42%), Gaps = 37/332 (11%)

Query: 63  LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISG 122
           L LG   H   +  GL     VG+ ++  Y   G +D    +F+ + E   + +N+MI  
Sbjct: 86  LKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRA 145

Query: 123 YAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN 182
           YA+ G A   +  Y  M S G   D  TF  VL S   L +  +G  V   I   G   +
Sbjct: 146 YARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFD 205

Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI---------------------- 220
            ++  +LI +Y +CG +  A  +FD M  + V SW A+                      
Sbjct: 206 LYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPW 265

Query: 221 ---------IGGYGIHGHGEVAVQLFDEMLK--SGIRPDGTAFVSVLSACSHAGLTDKGL 269
                    I GY   G  + A+ LFDEM+K  SG+RP+    +SVL AC+     ++G 
Sbjct: 266 RNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGR 325

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM-LVEPDGAVWGALLGACK 328
           +  + +  + GL         +  +  + G L +A    + +   E +   W  ++ A  
Sbjct: 326 Q-IHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYA 384

Query: 329 IHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
            + +   A   F ++I+  ++P +  +  LLS
Sbjct: 385 SYGHGLQAVSTFREMIQAGIQPDDITFTGLLS 416



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 95/225 (42%), Gaps = 6/225 (2%)

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160
           G    D VP      +   IS      ++  +  L + + + G  P  +++  V      
Sbjct: 27  GSAHIDTVPPPSSPPFKCSISPLT---ISATLQNLLQPLSAPGP-PPILSYAPVFQFLTG 82

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           L    +G +V   +   G      + + ++  YA  G++  + ++F+G+   + + + ++
Sbjct: 83  LNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSM 142

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           I  Y  +G  E  V  +  M   G   D   F  VL +         G +  +G+  + G
Sbjct: 143 IRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMG-KCVHGLILRIG 201

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           LQ      T ++ L G+ G++N+A ++ ++M +  D + W ALL 
Sbjct: 202 LQFDLYVATSLIILYGKCGEINDAGKVFDNMTIR-DVSSWNALLA 245


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/521 (39%), Positives = 304/521 (58%), Gaps = 19/521 (3%)

Query: 15   YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
            +N +I G + N     A+ L  KM   G   N +T    L +      L LG   H   +
Sbjct: 488  WNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVL 547

Query: 75   KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL---------------ITWNAM 119
            K G+  D  V N L+ MY KCG ++    +F  +P++                 ++W++M
Sbjct: 548  KVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSM 607

Query: 120  ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
            +SGY QNG     L+ +  M    V  D  T   V+S+CA  G   +G +V   IQ  G 
Sbjct: 608  VSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGH 667

Query: 180  GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            G + FL +++I+MY +CG+L  A  IF+    + VV WT++I G  +HG G  AV+LF+ 
Sbjct: 668  GLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFEL 727

Query: 240  MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
            M+  GI P+  +FV VL+ACSHAGL ++G +YF  M+  YG++PG EH+TCMVDL GRAG
Sbjct: 728  MINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAG 787

Query: 300  QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
            +LNE  E I +  +    +VW + L +C++HKN+E+      K+++LEP + G Y+L S+
Sbjct: 788  RLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLELEPFDAGPYILFSS 847

Query: 360  IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
            I +     +   ++R +M++R +KK+P  S+++LK +VH F++GDR+H Q  +IY  LD+
Sbjct: 848  ICATEHRWEEAAKIRSLMQQRGVKKNPSQSWIQLKNQVHSFVMGDRSHPQDTKIYSYLDE 907

Query: 420  LENLVQE----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRI 475
            L   ++E     D T        E+       HSEKLAIA+GII+T+PGT I VMKNLR+
Sbjct: 908  LIGRLKEIGYSTDVTPVMQDVEQEQRQVLLGYHSEKLAIAYGIISTAPGTPIRVMKNLRV 967

Query: 476  CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            C DCH FIK  S+++ R+ I+RD  RFHHFK G CSC DYW
Sbjct: 968  CIDCHNFIKYASELLGREIIIRDIHRFHHFKHGHCSCADYW 1008



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 169/363 (46%), Gaps = 49/363 (13%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICV-DPGYLWLGMCCHCIC 73
           +  LISG+    L ++ + LF KM++QGV  N  T+  +L  C  +     +G   H   
Sbjct: 355 WTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWI 414

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ-------- 125
           ++ GLDLD  + N ++  YVKC    Y  KLF  + EK  ++WN M+S Y Q        
Sbjct: 415 LRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSV 474

Query: 126 -----------------------NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162
                                  NG     LEL  +M + G   + +TF   L   + L 
Sbjct: 475 DLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLS 534

Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT--------- 213
              +G ++  Q+   G   + F+ N+LI+MY +CG ++KA  IF  +P+++         
Sbjct: 535 VLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESC 594

Query: 214 ------VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
                  VSW++++ GY  +G  E A++ F  M+ S +  D     SV+SAC+ AG+ + 
Sbjct: 595 DDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLEL 654

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           G +  +G   K G        + ++D+  + G LN+A  LI +   + +  +W +++  C
Sbjct: 655 GRQ-VHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAW-LIFNQAKDRNVVLWTSMISGC 712

Query: 328 KIH 330
            +H
Sbjct: 713 ALH 715



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 131/254 (51%), Gaps = 9/254 (3%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V +++++SGYV N    +A+  F  M    VE++  T+  ++  C   G L LG   H 
Sbjct: 601 SVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHG 660

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              K G  LD  +G+ ++ MYVKCGS++    +F+Q  ++ ++ W +MISG A +G    
Sbjct: 661 YIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGRE 720

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVG---LEVEQQIQANGFGSNPFLNNA 188
            + L+  M + G+ P+ V+FVGVL++C+H G    G     + +++     G+  F    
Sbjct: 721 AVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHF--TC 778

Query: 189 LINMYARCGNLKKARA-IFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           ++++Y R G L + +  I +    K    W + +    +H + E+ + +  ++L+  + P
Sbjct: 779 MVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLE--LEP 836

Query: 248 -DGTAFVSVLSACS 260
            D   ++   S C+
Sbjct: 837 FDAGPYILFSSICA 850



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 98/192 (51%), Gaps = 5/192 (2%)

Query: 85  GNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGV 144
           GN L+ +Y K  +++   K+F+++P+  + +W  +ISG+A+ GL+  VL L+ +M+  GV
Sbjct: 324 GNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGV 383

Query: 145 CPDAVTFVGVLSSC-AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
           CP+  T   VL SC +++    +G  +   I  NG   +  LNN++++ Y +C     A 
Sbjct: 384 CPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAE 443

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG 263
            +F  M  K  VSW  ++  Y   G  + +V LF ++       D  ++ +++      G
Sbjct: 444 KLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPG----KDAASWNTMIDGLMRNG 499

Query: 264 LTDKGLEYFYGM 275
                LE  Y M
Sbjct: 500 CERVALELLYKM 511


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/512 (40%), Positives = 301/512 (58%), Gaps = 43/512 (8%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +N+L++G   N    +A+ +  +M   G++ ++ TM  LLP   +            
Sbjct: 203 VVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTN------------ 250

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                          CL        +V + +++F ++  K L++WN MI+ Y  N +   
Sbjct: 251 --------------TCL-------DNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAE 289

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            ++++ +M+   V PDA++   VL +C  L A  +G  + + +       N  L NALI+
Sbjct: 290 AVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALID 349

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+CG L+ AR +FD M  + VVSWT++I  YG++G G  AV LF  M   G+ PD  A
Sbjct: 350 MYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIA 409

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           FVSVLSACSHAGL D+G  YF  M  +  + P  EH+ CMVDLLGRAGQ++EA   I+ M
Sbjct: 410 FVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQM 469

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            +EP+  VWGALL AC+++ N+ +  LA  ++ +L P  +GYYVLLSNIY++A   + + 
Sbjct: 470 PMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVT 529

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD------KLENLVQ 425
            VR +M+ + +KK PG S  EL  RVH F+ GD++H Q+ +IY  LD      K    V 
Sbjct: 530 TVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVSVGKMKEAGYVP 589

Query: 426 EHDGTKRS-DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
           E D      ++++ E HL    VHSEKLAIAF I+NT+PG+ I + KNLR+CGDCH+  K
Sbjct: 590 ETDSALHDVEEEDKECHL---AVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAK 646

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           L+SKIV R+  +RD  RFHHF +G CSC DYW
Sbjct: 647 LISKIVGREITIRDTNRFHHFYNGVCSCGDYW 678



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 154/328 (46%), Gaps = 41/328 (12%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  K     V +N +I  YV N L S+A+ +F  M   G++ +  T  C+L      
Sbjct: 93  IFDEIPKKN--VVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGS 150

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             LW+GM  H   V+ GLDL+  VGN L++MY KCG +    ++ DQ+P + +++WN+++
Sbjct: 151 EDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLV 210

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +G A+NG     LE+ +EM+ LG+ PDA T   +L                         
Sbjct: 211 AGCARNGQFDDALEVCKEMELLGLKPDAGTMASLL------------------------- 245

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
             P + N  ++      N+   + +F  +  K++VSW  +I  Y  +     AV +F +M
Sbjct: 246 --PAVTNTCLD------NVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQM 297

Query: 241 LKSGIRPDGTAFVSVLSACS--HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
               + PD  +  SVL AC    A L  + +  +   K    LQP       ++D+  + 
Sbjct: 298 EDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKR---LQPNLLLENALIDMYAKC 354

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGA 326
           G L  A E+ + M    D   W +++ A
Sbjct: 355 GCLEYAREVFDQMKFR-DVVSWTSMISA 381



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 137/278 (49%), Gaps = 15/278 (5%)

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           IC+   L  + S+G  LM  Y  CG     R +FD++P+K ++ +N MI  Y  N L + 
Sbjct: 61  ICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSD 120

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L +++ M   G+ PD  T+  VL + +      VG+++   +   G   N F+ N LI+
Sbjct: 121 ALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLIS 180

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY +CG L +A  + D MP + VVSW +++ G   +G  + A+++  EM   G++PD   
Sbjct: 181 MYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGT 240

Query: 252 FVSVLSACSHAGLTDKGL--EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL-- 307
             S+L A ++  L +     E F  + NK  +      +  M+ +        EA+++  
Sbjct: 241 MASLLPAVTNTCLDNVSFVKEMFMKLANKSLVS-----WNVMIAVYMNNSMPAEAVDIFL 295

Query: 308 -IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI 344
            +E   V+PD     ++L AC      +L+ L  G+ I
Sbjct: 296 QMEDHAVDPDAISIASVLPACG-----DLSALLLGRRI 328


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/507 (39%), Positives = 308/507 (60%), Gaps = 6/507 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NA+I G++ +   + A + +  M  +  +++++T   +L  C         +  H   V
Sbjct: 73  WNAIIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKACARVLARLESIQIHTHIV 132

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           + G   D  +G  L+ +Y K G +D   K+FD++ ++ + +WNA+ISG+AQ    T  L 
Sbjct: 133 RKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEALS 192

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L++ M+  G  P+ ++ +G LS+CA LG    G ++   I+   F  N  + N +I+MYA
Sbjct: 193 LFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVCNVVIDMYA 252

Query: 195 RCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
           +CG + KA  +F+ M  RK +V+W  +I  + +HG G  A++LF++M +SG+ PD  +++
Sbjct: 253 KCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDVSYL 312

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           +VL AC+H GL ++G   F  M+N  G++P  +HY  +VDLLGRAG+L+EA +++ SM  
Sbjct: 313 AVLCACNHGGLVEEGFRLFNSMEN-CGVKPNVKHYGSVVDLLGRAGRLHEAYDIVNSMPT 371

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
            PD  +W  LLGA + H+NVE+AE    K++++   + G +VLLSN+Y+       + RV
Sbjct: 372 VPDIVLWQTLLGASRTHRNVEIAETVSRKLVEMGSNHCGDFVLLSNVYAARERWADVGRV 431

Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS 433
           R  M+ R +KK PG SY+E  G +H F   D++H    EIY  LD++   V+E+     +
Sbjct: 432 REAMKNRDVKKVPGLSYIEGNGVIHKFYNADKSHESWREIYAKLDEIRFRVKEYGYVAET 491

Query: 434 D----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKI 489
                    E+  N    HSEKLA+AFG+I+TS GT I V+KNLRICGDCH  IKL+SKI
Sbjct: 492 SFVLHDIGEEDKENVLGHHSEKLAVAFGLISTSEGTPIQVIKNLRICGDCHFVIKLISKI 551

Query: 490 VDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DR+ IVRD  RFH FK GFCSC+DYW
Sbjct: 552 YDREIIVRDRVRFHRFKEGFCSCRDYW 578



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 122/267 (45%), Gaps = 5/267 (1%)

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           +F L +  +    L    +  G++ +    F Q+       WNA+I G+ Q+   T+   
Sbjct: 32  QFRLPISPARSKLLELYALSLGNLSFAILTFSQIRTPSTNDWNAIIRGFIQSPNPTNAFA 91

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
            Y+ M S     DA+T   VL +CA + A    +++   I   GF ++  L   L+++YA
Sbjct: 92  WYKSMISKSRKVDALTCSFVLKACARVLARLESIQIHTHIVRKGFIADALLGTTLLDVYA 151

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           + G +  A  +FD M ++ + SW A+I G+        A+ LF  M   G +P+  + + 
Sbjct: 152 KVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEALSLFKRMEIDGFKPNEISVLG 211

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
            LSAC+  G   +G E  +G           +    ++D+  + G +++A  + ESM   
Sbjct: 212 ALSACAQLGDFKEG-EKIHGYIKVERFDMNAQVCNVVIDMYAKCGFVDKAYLVFESMSCR 270

Query: 315 PDGAVWGALLGACKIH----KNVELAE 337
            D   W  ++ A  +H    K +EL E
Sbjct: 271 KDIVTWNTMIMAFAMHGEGCKALELFE 297


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/435 (43%), Positives = 277/435 (63%), Gaps = 4/435 (0%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+  ++K G +   ++LF ++PEK +++W  M++G++QNG     LE +  M   G  
Sbjct: 245 NSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGAR 304

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P+  T V  LS+CA +GA   GL +   +  NGF  N  +  AL++MYA+CGN++ A  +
Sbjct: 305 PNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKV 364

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           F     K ++ W+ +I G+ IHGH   A+Q F+ M  +G +PD   F++VL+ACSH+G  
Sbjct: 365 FHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQV 424

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           ++GL++F  M+  Y ++P  +HYT +VD+LGRAG+L+EAL+ I +M + PD  VWGAL  
Sbjct: 425 NEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGALFC 484

Query: 326 ACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKD 385
           AC+ HKNVE+AELA  K+++LEP + G YV LSN Y+     D   RVR+ MR+    KD
Sbjct: 485 ACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVGRWDDAERVRVSMRDHGAHKD 544

Query: 386 PGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD----QKNSEEH 441
           PG+S++E+  ++H F+ GD  H++ VEIY  LD++    +E   TK  +        EE 
Sbjct: 545 PGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDEISASAREKGYTKEIECVLHNIEEEEK 604

Query: 442 LNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATR 501
                 HSEKLA+AFGI++T PGT + ++KNLR+C DCH F+K  SK+  R+ I+RD  R
Sbjct: 605 EEALGYHSEKLALAFGIVSTRPGTTVRIVKNLRVCVDCHSFMKYASKMSKREIILRDMKR 664

Query: 502 FHHFKSGFCSCKDYW 516
           FHHF  G CSC DYW
Sbjct: 665 FHHFNDGVCSCGDYW 679



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 139/323 (43%), Gaps = 51/323 (15%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NALI G   NS    ++S F  M +  +  + +T   +L          +G   HC  +
Sbjct: 108 FNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGIL 167

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK----GLITWNAMISGYAQNGLAT 130
           KFGL+ D  V   L+ MYVK   +    K+FD+ PE      ++ WN +I GY + G   
Sbjct: 168 KFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLV 227

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
              EL+  M      P   T                             GS     N+LI
Sbjct: 228 KATELFDSM------PKKDT-----------------------------GS----WNSLI 248

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           N + + G++ +A+ +F  MP K VVSWT ++ G+  +G  E A++ F  ML+ G RP+  
Sbjct: 249 NGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDY 308

Query: 251 AFVSVLSACSHAGLTDKGLE---YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
             VS LSAC+  G  D GL    Y  G   K  L  G    T +VD+  + G +  A E 
Sbjct: 309 TIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIG----TALVDMYAKCGNIEHA-EK 363

Query: 308 IESMLVEPDGAVWGALLGACKIH 330
           +     E    +W  ++    IH
Sbjct: 364 VFHETKEKGLLIWSVMIWGWAIH 386



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 133/276 (48%), Gaps = 6/276 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  +++G+  N    +A+  F  M E+G   N  T++  L  C   G L  G+  H  
Sbjct: 273 VSWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNY 332

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               G  L+  +G  L+ MY KCG++++  K+F +  EKGL+ W+ MI G+A +G     
Sbjct: 333 LSGNGFKLNLVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKA 392

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           L+ +  MK  G  PD+V F+ VL++C+H G  + GL+    ++  G+   P + +   ++
Sbjct: 393 LQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMR-RGYLIEPSMKHYTLVV 451

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           +M  R G L +A      MP     V W A+      H + E+A     ++L+   +  G
Sbjct: 452 DMLGRAGRLDEALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPG 511

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
           + +V + +A +  G  D        M++ +G    P
Sbjct: 512 S-YVFLSNAYASVGRWDDAERVRVSMRD-HGAHKDP 545


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/521 (40%), Positives = 302/521 (57%), Gaps = 39/521 (7%)

Query: 35  FGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVK 94
           + +M   G+  ++ T+  +L  C D   + +G C H   ++ GL+ DF VG  L+ MYVK
Sbjct: 95  YARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVK 154

Query: 95  CGSVDYGRKLFDQV-------------------------------PEKGLITWNAMISGY 123
           CG +   RKLFD++                                 + +++W AMISGY
Sbjct: 155 CGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGY 214

Query: 124 AQNGLATHVLELYREMKSLG--VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGS 181
            QNG A   L L+ EM   G  + P+ VT V VL +CA   A   G  +       G   
Sbjct: 215 TQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHL 274

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
           N  +  AL  MYA+C +L +AR  FD + +  K +++W  +I  Y  HG G  AV +F+ 
Sbjct: 275 NSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFEN 334

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           ML++G++PD   F+ +LS CSH+GL D GL +F  M   + ++P  EHY C+VDLLGRAG
Sbjct: 335 MLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAG 394

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
           +L EA ELI  M ++   +VWGALL AC+ H+N+E+AELA  ++  LEP N+G YVLLSN
Sbjct: 395 RLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSN 454

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
           +Y+EA   + + ++R +++ + +KK PG S++E+ G+ HLFM  D++H Q  EIY+ L+ 
Sbjct: 455 LYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEA 514

Query: 420 LENLVQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRI 475
           L   ++      D +      + EE   +   HSEKLAIAFG++NT PG  + V KNLRI
Sbjct: 515 LPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRI 574

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           CGDCH   K +SKI +R+ IVRD  RFH FK G CSC DYW
Sbjct: 575 CGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 615



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 89/205 (43%), Gaps = 34/205 (16%)

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           LE Y  M  LG+  D  T   VL SCA L    +G  V  Q    G   + ++  +LI+M
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 151

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGY------GI-------------------- 226
           Y +CG +  AR +FD M  + + SW A+I GY      G+                    
Sbjct: 152 YVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMI 211

Query: 227 -----HGHGEVAVQLFDEMLKSG--IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279
                +G  E A+ LFDEML+ G  ++P+    VSVL AC+ +   ++G    +   N  
Sbjct: 212 SGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERG-RRIHDFANGI 270

Query: 280 GLQPGPEHYTCMVDLLGRAGQLNEA 304
           GL       T +  +  +   L EA
Sbjct: 271 GLHLNSSVQTALAGMYAKCYSLVEA 295


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/554 (38%), Positives = 311/554 (56%), Gaps = 61/554 (11%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +NA+I+GY  N L ++A+  F +M     +  +  T+  +L  C + G + +G   H 
Sbjct: 260 VSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHA 319

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVD-------------------------------- 99
             ++  +     V N L++MY K GSV+                                
Sbjct: 320 YILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDM 379

Query: 100 -YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC 158
            + R++FD +  + ++ W AMI GY QNG     +EL+R M   G  P++ T   VLS C
Sbjct: 380 KHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVC 439

Query: 159 AHLGAHSVGLEVEQQIQANGFGS----NPFLNNALINMYARCGNLKKARAIFDGMP-RKT 213
           A L      LE  +QI      S    +  ++N+++ MYAR G+L  AR +FD +  RK 
Sbjct: 440 ASLAC----LEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKE 495

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
            V+WT++I     HG GE AV LF+EML+ G++PD   FV VLSAC+H G  D+G  YF 
Sbjct: 496 TVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQ 555

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNV 333
            +++K+G+ P   HY CMVDLL RAG  +EA E I+ M VEPD   WG+LL AC++HKN 
Sbjct: 556 QLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNA 615

Query: 334 ELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVEL 393
           +LAELA  K++ ++P N+G Y  LSN+YS     +   ++    +++ +KK+ G+S+  +
Sbjct: 616 DLAELAAEKLLSIDPGNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHI 675

Query: 394 KGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE-----------HDGTKRSDQKNSEEHL 442
             RVH+F   D  H Q   +YR   K+ + +++           HD     D +  EE L
Sbjct: 676 GNRVHVFGADDVLHPQRDTVYRTAAKMWDDIKKAGFVPDLQSVLHD----VDDELKEEML 731

Query: 443 NDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRF 502
           +    HSEKLAIAFG+++T   T + +MKNLR+C DCH  IK +SK+ DR+ I+RDATRF
Sbjct: 732 SR---HSEKLAIAFGLVSTPEKTTLRIMKNLRVCNDCHTAIKFISKVADREIILRDATRF 788

Query: 503 HHFKSGFCSCKDYW 516
           HHFK GFCSCKDYW
Sbjct: 789 HHFKDGFCSCKDYW 802



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 160/384 (41%), Gaps = 68/384 (17%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  ++ G        EA+ +F  M   G+     T+  +L  C       +G   H  
Sbjct: 128 VSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSF 187

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMIS----------- 121
            VK GL     V N ++ MY KCG  +  R +F+++PE+ + +WNAM+S           
Sbjct: 188 VVKLGLSSCVPVANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLA 247

Query: 122 --------------------GYAQNGLATHVLELYREMKSLG-VCPDAVTFVGVLSSCAH 160
                               GY QNGL    L  +  M S   + PD  T   VLS+CA+
Sbjct: 248 LSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACAN 307

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC------------------------ 196
           LG  S+G +V   I  +       + NALI+MYA+                         
Sbjct: 308 LGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFT 367

Query: 197 ---------GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
                    G++K AR +FD M  + VV+WTA+I GY  +GH + A++LF  M++SG  P
Sbjct: 368 ALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEP 427

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYT-CMVDLLGRAGQLNEALE 306
           +     +VLS C+     + G +     K    LQ      +  +V +  R+G L  A  
Sbjct: 428 NSYTVAAVLSVCASLACLEYGKQIH--CKAIRSLQEQSSSVSNSIVTMYARSGSLPWARR 485

Query: 307 LIESMLVEPDGAVWGALLGACKIH 330
           + + +    +   W +++ A   H
Sbjct: 486 VFDRVHWRKETVTWTSMIVALAQH 509



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/261 (33%), Positives = 137/261 (52%), Gaps = 9/261 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD  + S    V + A+I GY  N    EA+ LF  M   G E NS T+  +L +C   
Sbjct: 385 MFD--VMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASL 442

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP-EKGLITWNAM 119
             L  G   HC  ++   +   SV N ++TMY + GS+ + R++FD+V   K  +TW +M
Sbjct: 443 ACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSM 502

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I   AQ+GL    + L+ EM  +GV PD +TFVGVLS+C H+G    G    QQ+Q +  
Sbjct: 503 IVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQ-DKH 561

Query: 180 GSNPFLNN--ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQL 236
           G  P +++   ++++ AR G   +A+     MP     ++W +++    +H + ++A +L
Sbjct: 562 GIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLA-EL 620

Query: 237 FDEMLKSGIRPDGTAFVSVLS 257
             E L S I P  +   S LS
Sbjct: 621 AAEKLLS-IDPGNSGAYSALS 640



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 104/215 (48%), Gaps = 32/215 (14%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+++Y K G +   R +F ++PE+  ++W  M+ G  + G     ++++ +M + G+ 
Sbjct: 100 NSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLS 159

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P   T   VLSSCA   A  VG +V   +   G  S   + N+++NMY +CG+ + ARA+
Sbjct: 160 PTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAV 219

Query: 206 -------------------------------FDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
                                          F+ MP +T+VSW A+I GY  +G    A+
Sbjct: 220 FERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKAL 279

Query: 235 QLFDEMLK-SGIRPDGTAFVSVLSACSHAGLTDKG 268
             F  ML  S + PD     SVLSAC++ G+   G
Sbjct: 280 WFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIG 314



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 35/176 (19%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           N F  N+L+++YA+ G L  ARA+F  MP +  VSWT ++ G    G    A+++F +M+
Sbjct: 95  NVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMV 154

Query: 242 KSGIRPDGTAFVSVLSACS-----------HAGLTDKGLEYFYGMKNK----YG------ 280
             G+ P      +VLS+C+           H+ +   GL     + N     YG      
Sbjct: 155 TDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAE 214

Query: 281 -----LQPGPEH----YTCMVDLLGRAGQLNEALELIESMLVEPDGAV--WGALLG 325
                 +  PE     +  MV L    G+++ AL L E+M   PD  +  W A++ 
Sbjct: 215 TARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENM---PDRTIVSWNAVIA 267


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/514 (40%), Positives = 306/514 (59%), Gaps = 15/514 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGV-EINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V ++ALI G+VL   ++EA +LF  M  +G+  +++ ++   L +C     L +G   H 
Sbjct: 272 VTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHA 331

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           +  K G+  D +  N L++MY K G ++     FD++  K  I++ A++SG  QNG A  
Sbjct: 332 LIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEE 391

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
              ++++M++  + PD  T V ++ +C+HL A   G      +   G      + N+LI+
Sbjct: 392 AFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLID 451

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+CG +  +R +FD MP + VVSW  +I GYGIHG G+ A  LF  M   G  PD   
Sbjct: 452 MYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVT 511

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+ +++ACSH+GL  +G  +F  M +KYG+ P  EHY CMVDLL R G L+EA + I+SM
Sbjct: 512 FICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSM 571

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            ++ D  VWGALLGAC+IHKN++L +     + KL P  TG +VLLSNI+S A   D   
Sbjct: 572 PLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAA 631

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
            VR++ + +  KK PGYS++E+ G +H F+ GD++H  + +IY  LD +  +V   D  K
Sbjct: 632 EVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHELDNI--MV---DIKK 686

Query: 432 RSDQKNSEEHLNDTEV---------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLF 482
              Q ++   L D E          HSEKLAIAFG+++ +    I V KNLR+CGDCH  
Sbjct: 687 LGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTA 746

Query: 483 IKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           IK ++ + +R  IVRD  RFHHFK+G CSC ++W
Sbjct: 747 IKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/289 (33%), Positives = 153/289 (52%), Gaps = 12/289 (4%)

Query: 2   FDE-SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           FDE ++K T   + Y AL+SG V N    EA  +F KM+   +E +  TM+ L+P C   
Sbjct: 365 FDEIAVKDT---ISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHL 421

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G C H   +  GL L+ S+ N L+ MY KCG +D  R++FD++P + +++WN MI
Sbjct: 422 AALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMI 481

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GY  +GL      L+  MK+ G  PD VTF+ ++++C+H G  + G      +  + +G
Sbjct: 482 AGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTM-THKYG 540

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLF 237
             P + +   ++++ AR G L +A      MP K  V  W A++G   IH + ++  Q+ 
Sbjct: 541 ILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVS 600

Query: 238 DEMLKSGIRPDGTA-FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
             + K G  P+GT  FV + +  S AG  D+  E     K K G +  P
Sbjct: 601 RIIQKLG--PEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVK-GFKKSP 646



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 158/323 (48%), Gaps = 7/323 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +NA+++GY  + +   A++    M++  G+  N+ T++ LLP+    G L+ G   H 
Sbjct: 167 VAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHA 226

Query: 72  ICVKFGLDLDFS---VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            C++  L+ +     +G  L+ MY KC  + Y  ++F  +P +  +TW+A+I G+     
Sbjct: 227 YCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDR 286

Query: 129 ATHVLELYREMKSLGVC-PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
            T    L+++M   G+C   A +    L  CA L    +G ++   I  +G  ++   +N
Sbjct: 287 MTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASN 346

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           +L++MYA+ G + +A   FD +  K  +S+ A++ G   +G  E A  +F +M    + P
Sbjct: 347 SLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEP 406

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           D    VS++ ACSH      G +  +G     GL         ++D+  + G+++ + ++
Sbjct: 407 DIATMVSLIPACSHLAALQHG-KCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQV 465

Query: 308 IESMLVEPDGAVWGALLGACKIH 330
            + M    D   W  ++    IH
Sbjct: 466 FDKMPAR-DVVSWNTMIAGYGIH 487



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 153/342 (44%), Gaps = 9/342 (2%)

Query: 14  CYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
            YNALI  Y        A+ L+  M    V  N  T   +L  C     L  G   H   
Sbjct: 67  AYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHA 126

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
              GL  D  V   L+ +Y++C      R +F ++P + ++ WNAM++GYA +G+  H +
Sbjct: 127 AAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAI 186

Query: 134 ELYREMKSL-GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP---FLNNAL 189
               +M+   G+ P+A T V +L   A  GA   G  +           N     +  AL
Sbjct: 187 AHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTAL 246

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI-RPD 248
           ++MYA+C  L  A  +F GMP +  V+W+A+IGG+ +      A  LF +ML  G+    
Sbjct: 247 LDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLS 306

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
            T+  S L  C+       G +  + +  K G+         ++ +  +AG +NEA    
Sbjct: 307 ATSVASALRVCASLADLHMGTQ-LHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFF 365

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV--IKLEP 348
           + + V+ D   +GALL  C  +   E A L F K+    +EP
Sbjct: 366 DEIAVK-DTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEP 406



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 115/242 (47%), Gaps = 8/242 (3%)

Query: 89  MTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDA 148
           +  ++  G +   R++FD++P      +NA+I  Y+  G     ++LYR M    V P+ 
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNK 100

Query: 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208
            TF  VL +C+ L     G  +     A G  ++ F++ ALI++Y RC     AR +F  
Sbjct: 101 YTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAK 160

Query: 209 MPRKTVVSWTAIIGGYGIHG--HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD 266
           MP + VV+W A++ GY  HG  H  +A  L D     G+RP+ +  VS+L   +  G   
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIA-HLLDMQDHGGLRPNASTLVSLLPLLAQHGALF 219

Query: 267 KGLEYFYGMKNKYGLQPGPEHY---TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGAL 323
           +G    +    +  L+   E     T ++D+  +  QL  A  +   M V  D   W AL
Sbjct: 220 QGTS-IHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRND-VTWSAL 277

Query: 324 LG 325
           +G
Sbjct: 278 IG 279


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/514 (40%), Positives = 306/514 (59%), Gaps = 15/514 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGV-EINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V ++ALI G+VL   ++EA +LF  M  +G+  +++ ++   L +C     L +G   H 
Sbjct: 272 VTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHA 331

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           +  K G+  D +  N L++MY K G ++     FD++  K  I++ A++SG  QNG A  
Sbjct: 332 LIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEE 391

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
              ++++M++  + PD  T V ++ +C+HL A   G      +   G      + N+LI+
Sbjct: 392 AFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLID 451

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+CG +  +R +FD MP + VVSW  +I GYGIHG G+ A  LF  M   G  PD   
Sbjct: 452 MYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVT 511

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+ +++ACSH+GL  +G  +F  M +KYG+ P  EHY CMVDLL R G L+EA + I+SM
Sbjct: 512 FICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSM 571

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            ++ D  VWGALLGAC+IHKN++L +     + KL P  TG +VLLSNI+S A   D   
Sbjct: 572 PLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAA 631

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
            VR++ + +  KK PGYS++E+ G +H F+ GD++H  + +IY  LD +  +V   D  K
Sbjct: 632 EVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHELDNI--MV---DIKK 686

Query: 432 RSDQKNSEEHLNDTEV---------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLF 482
              Q ++   L D E          HSEKLAIAFG+++ +    I V KNLR+CGDCH  
Sbjct: 687 LGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTA 746

Query: 483 IKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           IK ++ + +R  IVRD  RFHHFK+G CSC ++W
Sbjct: 747 IKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/289 (33%), Positives = 153/289 (52%), Gaps = 12/289 (4%)

Query: 2   FDE-SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           FDE ++K T   + Y AL+SG V N    EA  +F KM+   +E +  TM+ L+P C   
Sbjct: 365 FDEIAVKDT---ISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHL 421

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G C H   +  GL L+ S+ N L+ MY KCG +D  R++FD++P + +++WN MI
Sbjct: 422 AALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMI 481

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GY  +GL      L+  MK+ G  PD VTF+ ++++C+H G  + G      +  + +G
Sbjct: 482 AGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTM-THKYG 540

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLF 237
             P + +   ++++ AR G L +A      MP K  V  W A++G   IH + ++  Q+ 
Sbjct: 541 ILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVS 600

Query: 238 DEMLKSGIRPDGTA-FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
             + K G  P+GT  FV + +  S AG  D+  E     K K G +  P
Sbjct: 601 RIIQKLG--PEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVK-GFKKSP 646



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 158/323 (48%), Gaps = 7/323 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +NA+++GY  + +   A++    M++  G+  N+ T++ LLP+    G L+ G   H 
Sbjct: 167 VAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHA 226

Query: 72  ICVKFGLDLDFS---VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            C++  L+ +     +G  L+ MY KC  + Y  ++F  +P +  +TW+A+I G+     
Sbjct: 227 YCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDR 286

Query: 129 ATHVLELYREMKSLGVC-PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
            T    L+++M   G+C   A +    L  CA L    +G ++   I  +G  ++   +N
Sbjct: 287 MTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASN 346

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           +L++MYA+ G + +A   FD +  K  +S+ A++ G   +G  E A  +F +M    + P
Sbjct: 347 SLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEP 406

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           D    VS++ ACSH      G +  +G     GL         ++D+  + G+++ + ++
Sbjct: 407 DIATMVSLIPACSHLAALQHG-KCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQV 465

Query: 308 IESMLVEPDGAVWGALLGACKIH 330
            + M    D   W  ++    IH
Sbjct: 466 FDKMPAR-DVVSWNTMIAGYGIH 487



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 153/342 (44%), Gaps = 9/342 (2%)

Query: 14  CYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
            YNALI  Y        A+ L+  M    V  N  T   +L  C     L  G   H   
Sbjct: 67  AYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHA 126

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
              GL  D  V   L+ +Y++C      R +F ++P + ++ WNAM++GYA +G+  H +
Sbjct: 127 AAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAI 186

Query: 134 ELYREMKSL-GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP---FLNNAL 189
               +M+   G+ P+A T V +L   A  GA   G  +           N     +  AL
Sbjct: 187 AHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTAL 246

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI-RPD 248
           ++MYA+C  L  A  +F GMP +  V+W+A+IGG+ +      A  LF +ML  G+    
Sbjct: 247 LDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLS 306

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
            T+  S L  C+       G +  + +  K G+         ++ +  +AG +NEA    
Sbjct: 307 ATSVASALRVCASLADLHMGTQ-LHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFF 365

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV--IKLEP 348
           + + V+ D   +GALL  C  +   E A L F K+    +EP
Sbjct: 366 DEIAVK-DTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEP 406



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 115/242 (47%), Gaps = 8/242 (3%)

Query: 89  MTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDA 148
           +  ++  G +   R++FD++P      +NA+I  Y+  G     ++LYR M    V P+ 
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNK 100

Query: 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208
            TF  VL +C+ L     G  +     A G  ++ F++ ALI++Y RC     AR +F  
Sbjct: 101 YTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAK 160

Query: 209 MPRKTVVSWTAIIGGYGIHG--HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD 266
           MP + VV+W A++ GY  HG  H  +A  L D     G+RP+ +  VS+L   +  G   
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIA-HLLDMQDHGGLRPNASTLVSLLPLLAQHGALF 219

Query: 267 KGLEYFYGMKNKYGLQPGPEHY---TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGAL 323
           +G    +    +  L+   E     T ++D+  +  QL  A  +   M V  D   W AL
Sbjct: 220 QGTS-IHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRND-VTWSAL 277

Query: 324 LG 325
           +G
Sbjct: 278 IG 279


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/552 (39%), Positives = 312/552 (56%), Gaps = 64/552 (11%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEI--------------------------- 45
           V +NA+++GY  N    +A+SLFGKMRE+ +E                            
Sbjct: 298 VTWNAMVTGYSQNGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQ 357

Query: 46  --------NSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLD-------LDFSVGNCLMT 90
                   N VT++ LL  C   G L  G   HC  VKF L         D +V N L+ 
Sbjct: 358 MCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALID 417

Query: 91  MYVKCGSVDYGRKLFDQV--PEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC--P 146
           MY KC S++  R +FD++   ++ ++TW  MI GYAQ+G A H L+L+ EM  +  C  P
Sbjct: 418 MYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVP 477

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQI-QANGFGSNP-FLNNALINMYARCGNLKKARA 204
           +  T   VL +CA L A   G ++   + + +   S+  F+ N LI+MY++ G++  A+ 
Sbjct: 478 NDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQV 537

Query: 205 IFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL 264
           +FD M ++  VSWT+++ GYG+HG  E A ++FDEM K  +  DG  F+ VL ACSH+G+
Sbjct: 538 VFDSMSKRNAVSWTSLLTGYGMHGRSEDAFRVFDEMRKEALVLDGITFLVVLYACSHSGM 597

Query: 265 TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
                         +G+ PG EHY CMVDLLGRAG+L EA+ LI  M +EP   VW ALL
Sbjct: 598 -------------DFGVDPGVEHYACMVDLLGRAGRLGEAMRLINDMPIEPTPVVWIALL 644

Query: 325 GACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKK 384
            AC+IH N ELAE A  K+++L+  N G Y LLSNIY+ AR    + R+  +M+   +KK
Sbjct: 645 SACRIHSNEELAEFAAKKLLELKADNDGTYTLLSNIYANARRWKDVARIGYLMKRTGIKK 704

Query: 385 DPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLND 444
            PG+S+V+ +  +  F VGDR H Q+ +IY  L  L   ++ +      D +   + L++
Sbjct: 705 IPGWSWVKGRKGMETFYVGDRTHLQSQKIYETLADLIKRIKANFSLHDVDDEEKGDQLSE 764

Query: 445 TEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHH 504
              HSEKLA+A+ I+   PG  I + KNLRICGD H  I  +S IV+ + I+RD++RFH 
Sbjct: 765 ---HSEKLALAYAILTLPPGAPIRITKNLRICGDFHSAITYISMIVEHEIILRDSSRFHQ 821

Query: 505 FKSGFCSCKDYW 516
           FK+G CSCK YW
Sbjct: 822 FKNGSCSCKGYW 833



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 122/397 (30%), Positives = 198/397 (49%), Gaps = 56/397 (14%)

Query: 1   VFDE-SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICV 58
           VFDE   +    +V +N+++S Y    + + AVSLF +M    G+  ++V ++ +LP+C 
Sbjct: 183 VFDELCYRGICDSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNILPVC- 241

Query: 59  DPGYLWLGMC---CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT 115
             GYL LG+C    H  CV+ GL  D  VGN L+ MY KCG ++   K+F+++  K ++T
Sbjct: 242 --GYLGLGLCGRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVT 299

Query: 116 WNAM-----------------------------------ISGYAQNGLATHVLELYREMK 140
           WNAM                                   ISGYAQ G     ++++R+M 
Sbjct: 300 WNAMVTGYSQNGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMC 359

Query: 141 SLGVCPDAVTFVGVLSSCAHLGA-------HSVGLEVEQQIQANGFGSNPFLNNALINMY 193
                P+ VT + +LS+CA +GA       H   ++   + + N    +  + NALI+MY
Sbjct: 360 GCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMY 419

Query: 194 ARCGNLKKARAIFDGM-PR-KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK--SGIRPDG 249
           A+C +L+ ARA+FD + P+ + VV+WT +IGGY  HG    A+QLF EM K  + I P+ 
Sbjct: 420 AKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPND 479

Query: 250 TAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
                VL AC+       G + + Y ++             C++D+  ++G ++ A  + 
Sbjct: 480 FTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVF 539

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345
           +SM  + +   W +LL    +H   E A   F ++ K
Sbjct: 540 DSM-SKRNAVSWTSLLTGYGMHGRSEDAFRVFDEMRK 575



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 147/280 (52%), Gaps = 5/280 (1%)

Query: 1   VFDESIKSTHLTV-CYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD 59
           + ++++  +H +V  +N LI   +  +  + A+ LF +M+      +  T   +   C +
Sbjct: 79  LLEKNVTPSHSSVYWWNQLIRHALHFNSPNTALRLFRRMKTLHWTPDHYTFPFVFKACGE 138

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL---ITW 116
                LG   H   ++ G + +  V N +++MY KC +V + RK+FD++  +G+   +TW
Sbjct: 139 ISNFELGASIHGCVIRLGFESNVFVCNAVISMYGKCKAVVHARKVFDELCYRGICDSVTW 198

Query: 117 NAMISGYAQNGLATHVLELYREMK-SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175
           N+++S Y+   +    + L+REM    G+ PD V  V +L  C +LG    G +V     
Sbjct: 199 NSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHGFCV 258

Query: 176 ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQ 235
            +G   + F+ NAL++MYA+CG ++ A  +F+ M  K VV+W A++ GY  +G  E A+ 
Sbjct: 259 RSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALS 318

Query: 236 LFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           LF +M +  I  D   + SV+S  +  G   + ++ F  M
Sbjct: 319 LFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQM 358



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 121/257 (47%), Gaps = 21/257 (8%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMR--EQGVEINSVTMLCLLPICV 58
           +FDE        V +  +I GY  +   + A+ LF +M   +  +  N  T+ C+L  C 
Sbjct: 431 MFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACA 490

Query: 59  DPGYLWLGMCCHCICVKFG-LDLD-FSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
               L  G   H   ++   +D D   V NCL+ MY K G VD  + +FD + ++  ++W
Sbjct: 491 RLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSW 550

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
            ++++GY  +G +     ++ EM+   +  D +TF+ VL +C+H G              
Sbjct: 551 TSLLTGYGMHGRSEDAFRVFDEMRKEALVLDGITFLVVLYACSHSGM------------- 597

Query: 177 NGFGSNPFLNN--ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVA 233
             FG +P + +   ++++  R G L +A  + + MP   T V W A++    IH + E+A
Sbjct: 598 -DFGVDPGVEHYACMVDLLGRAGRLGEAMRLINDMPIEPTPVVWIALLSACRIHSNEELA 656

Query: 234 VQLFDEMLKSGIRPDGT 250
                ++L+     DGT
Sbjct: 657 EFAAKKLLELKADNDGT 673


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/548 (38%), Positives = 307/548 (56%), Gaps = 39/548 (7%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           + H+ V +NA+ISGYV      EA  L  +M   G++++  T   ++    + G   +G 
Sbjct: 235 TDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGR 294

Query: 68  CCHCICVKFGLDLD----FSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA----- 118
             H   ++  +        SV N L+T+Y +CG +   R++FD++P K L++WNA     
Sbjct: 295 QVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGC 354

Query: 119 --------------------------MISGYAQNGLATHVLELYREMKSLGVCPDAVTFV 152
                                     MISG AQNG     L+L+ +MK  G+ P    + 
Sbjct: 355 VNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYA 414

Query: 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK 212
           G ++SC+ LG+   G ++  QI   G  S+  + NALI MY+RCG ++ A  +F  MP  
Sbjct: 415 GAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYV 474

Query: 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF 272
             VSW A+I     HGHG  A+QL+++MLK  I PD   F+++LSACSHAGL  +G  YF
Sbjct: 475 DSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYF 534

Query: 273 YGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKN 332
             M+  YG+ P  +HY+ ++DLL RAG  +EA  + ESM  EP   +W ALL  C IH N
Sbjct: 535 DTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGN 594

Query: 333 VELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVE 392
           +EL   A  ++++L P   G Y+ LSN+Y+     D + RVR +MRER +KK+PG S++E
Sbjct: 595 MELGIQAADRLLELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIE 654

Query: 393 LKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----HDGTKRSDQKNSEEHLNDTEVH 448
           ++  VH+F+V D  H +   +YR L++L + +++     D         SE+       H
Sbjct: 655 VENMVHVFLVDDAVHPEVHAVYRYLEQLVHEMRKLGYVPDTKFVLHDMESEQKEYALSTH 714

Query: 449 SEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSG 508
           SEKLA+ +GI+    G  I V KNLRICGDCH   K +SK+VDR+ IVRD  RFHHF++G
Sbjct: 715 SEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYISKVVDREIIVRDRKRFHHFRNG 774

Query: 509 FCSCKDYW 516
            CSC +YW
Sbjct: 775 ECSCSNYW 782



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 121/461 (26%), Positives = 189/461 (40%), Gaps = 93/461 (20%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVT---MLCLLPIC 57
           +F+ +  S   TV YNA+I+ +  +     A+ LF +M+  G   +  T   +L  L + 
Sbjct: 84  LFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLI 143

Query: 58  VDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS---------VDYGRKLFDQV 108
            D       +  HC   K+G     SV N LM+ YV C S         +   RKLFD+ 
Sbjct: 144 ADEETHCQQL--HCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEA 201

Query: 109 PE----------------------------KGL-----ITWNAMISGYAQNGLATHVLEL 135
           P                             +G+     + WNAMISGY   G      +L
Sbjct: 202 PPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDL 261

Query: 136 YREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQ-----IQANGFGSNPFLNNALI 190
            R M SLG+  D  T+  V+S+ ++ G  ++G +V        +Q +G      +NNALI
Sbjct: 262 LRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLS-VNNALI 320

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAI------------------------------ 220
            +Y RCG L +AR +FD MP K +VSW AI                              
Sbjct: 321 TLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTV 380

Query: 221 -IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279
            I G   +G GE  ++LF++M   G+ P   A+   +++CS  G  D G +  +    + 
Sbjct: 381 MISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNG-QQLHSQIIQL 439

Query: 280 GLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELA 339
           G          ++ +  R G L EA + +   +   D   W A++ A   H +   A   
Sbjct: 440 GHDSSLSVGNALITMYSRCG-LVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQL 498

Query: 340 FGKVIKLE--PMNTGYYVLLS-----NIYSEARNLDGIMRV 373
           + K++K +  P    +  +LS      +  E R+    MRV
Sbjct: 499 YEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRV 539



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 131/313 (41%), Gaps = 59/313 (18%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPE--KGLITWNAMISGYAQNGLATHVLELYRE 138
           D      +++ Y   G++    +LF+  P   +  +++NAMI+ ++ +      L+L+ +
Sbjct: 61  DIVAATTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQ 120

Query: 139 MKSLGVCPDAVTF---VGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR 195
           MK LG  PD  TF   +G LS  A    H   L  E  +   G  S P + NAL++ Y  
Sbjct: 121 MKRLGFVPDPFTFSSVLGALSLIADEETHCQQLHCE--VFKWGALSVPSVLNALMSCYVS 178

Query: 196 CG------------------------------------------NLKKARAIFDGMPRKT 213
           C                                           +L  AR + +GM    
Sbjct: 179 CASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHI 238

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YF 272
            V+W A+I GY   G  E A  L   M   GI+ D   + SV+SA S+AGL + G + + 
Sbjct: 239 AVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHA 298

Query: 273 YGMKNKYGLQPGPEHY-----TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           Y ++    +QP   H+       ++ L  R G+L EA  + + M V+ D   W A+L  C
Sbjct: 299 YVLRTV--VQPS-GHFVLSVNNALITLYTRCGKLVEARRVFDKMPVK-DLVSWNAILSGC 354

Query: 328 KIHKNVELAELAF 340
              + +E A   F
Sbjct: 355 VNARRIEEANSIF 367



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 3/138 (2%)

Query: 159 AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWT 218
           A L   S    V   I  +GF   P + N LI+ Y +  N+  AR +FD +P+  +V+ T
Sbjct: 7   AQLSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAAT 66

Query: 219 AIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278
            ++  Y   G+ ++A QLF+    S IR D  ++ ++++A SH+      L+ F  MK +
Sbjct: 67  TMLSAYSAAGNIKLAHQLFNATPMS-IR-DTVSYNAMITAFSHSHDGHAALQLFVQMK-R 123

Query: 279 YGLQPGPEHYTCMVDLLG 296
            G  P P  ++ ++  L 
Sbjct: 124 LGFVPDPFTFSSVLGALS 141


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/508 (39%), Positives = 286/508 (56%), Gaps = 4/508 (0%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
            V +  +I+GY   +   +A++ F +M ++G+  + V +   +  C     L  G   H  
Sbjct: 540  VSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQ 599

Query: 73   CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
                G   D    N L+T+Y KCG+++     F+Q      I WNA++SG+ Q+G     
Sbjct: 600  ACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEA 659

Query: 133  LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            L ++  M   G+  +  TF   + + +       G +V   I   G+ S   + NA+I+M
Sbjct: 660  LRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISM 719

Query: 193  YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
            YA+CG++  A+  F  +  K  VSW A+I  Y  HG G  A+  FD+M+ S +RP+    
Sbjct: 720  YAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTL 779

Query: 253  VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            V VLSACSH GL DKG+EYF  M  +YGL P PEHY C+VD+L RAG L+ A + I  M 
Sbjct: 780  VGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMP 839

Query: 313  VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            +EPD  VW  LL AC +HKN+E+ E A   +++LEP ++  YVLLSN+Y+  R  D    
Sbjct: 840  IEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVCRKWDARDL 899

Query: 373  VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----HD 428
             R  M+E+ +KK+PG S++E+K  +H F VGD+NH    EI+     L     E     D
Sbjct: 900  TRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFKDLTKRASEIGYVQD 959

Query: 429  GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
                  +   E+      +HSEKLAI+FG+++      I VMKNLR+C DCH +IK VSK
Sbjct: 960  CFSLLSELQQEQKDPTIFIHSEKLAISFGLLSLPATMPINVMKNLRVCNDCHDWIKFVSK 1019

Query: 489  IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            + +R+ IVRDA RFHHF+ G CSCKDYW
Sbjct: 1020 VSNREIIVRDAYRFHHFEGGACSCKDYW 1047



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 146/332 (43%), Gaps = 2/332 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V YN LI+G        +A+ LF +M+  G+E +S T+  L+  C   G L+ G   H 
Sbjct: 337 AVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHA 396

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              K G   +  +   L+ +Y KC  ++     F +   + ++ WN M+  Y       +
Sbjct: 397 YTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRN 456

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
              ++R+M+   + P+  T+  +L +C  LG   +G ++  QI    F  N ++ + LI+
Sbjct: 457 SFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLID 516

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+ G L  A  I      K VVSWT +I GY  +   + A+  F +ML  GIR D   
Sbjct: 517 MYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVG 576

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
             + +SAC+      +G +  +      G          +V L  + G + EA    E  
Sbjct: 577 LTNAVSACAGLQALKEG-QQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQT 635

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
               D   W AL+   +   N E A   F ++
Sbjct: 636 EA-GDNIAWNALVSGFQQSGNNEEALRVFARM 666



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 151/318 (47%), Gaps = 2/318 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N ++  Y L   +  +  +F +M+ + +  N  T   +L  C+  G L LG   H  
Sbjct: 439 VLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQ 498

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K    L+  V + L+ MY K G +D    +  +   K +++W  MI+GY Q       
Sbjct: 499 IIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKA 558

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L  +R+M   G+  D V     +S+CA L A   G ++  Q   +GF S+    NAL+ +
Sbjct: 559 LTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTL 618

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++CGN+++A   F+       ++W A++ G+   G+ E A+++F  M + GI  +   F
Sbjct: 619 YSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTF 678

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S + A S      +G +  + +  K G     E    ++ +  + G +++A +    + 
Sbjct: 679 GSAVKAASETANMKQGKQ-VHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELS 737

Query: 313 VEPDGAVWGALLGACKIH 330
           ++ + + W A++ A   H
Sbjct: 738 MKNEVS-WNAMINAYSKH 754



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 153/328 (46%), Gaps = 7/328 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  + T  T  +N +I      SL  +   LFG+M  + V  N  T   +L  C   
Sbjct: 125 VFDEMPERTIFT--WNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEAC-RG 181

Query: 61  GYLWLGMC--CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
           G +   +    H   +  GL     V N L+ +Y + G VD  R++FD +  K   +W A
Sbjct: 182 GSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVA 241

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           MISG ++N      + L+ +M  LG+ P    F  VLS+C  + +  +G ++   +   G
Sbjct: 242 MISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 301

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
           F S+ ++ NAL+++Y   G+L  A  IF  M ++  V++  +I G    G+GE A++LF 
Sbjct: 302 FSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK 361

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
            M   G+ PD     S++ ACS  G    G +  +    K G     +    +++L  + 
Sbjct: 362 RMQLDGLEPDSNTLASLVVACSSDGTLFSG-QQLHAYTTKLGFASNDKIEGALLNLYAKC 420

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGA 326
             +  AL       VE +  +W  +L A
Sbjct: 421 SDIETALNYFLETEVE-NVVLWNVMLVA 447



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 148/325 (45%), Gaps = 43/325 (13%)

Query: 42  GVEINSVTMLCLLPICVDP-GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDY 100
           G+  N  T+  LL  C+   G L  G   H   +K G D +  +   L+  Y+  G +D 
Sbjct: 62  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDG 121

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160
             K+FD++PE+ + TWN MI   A   L+  V  L+  M +  V P+  TF GVL +C  
Sbjct: 122 ALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACR- 180

Query: 161 LGAHSVGLEVEQQIQA----NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS 216
               SV  +V +QI A     G G +  + N LI++Y+R G + +AR +FDG+  K   S
Sbjct: 181 --GGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSS 238

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
           W A+I G   +     A++LF +M   GI P   AF SVLSAC      + G E  +G+ 
Sbjct: 239 WVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIG-EQLHGLV 297

Query: 277 NKYGLQP-------------------GPEH------------YTCMVDLLGRAGQLNEAL 305
            K G                        EH            Y  +++ L + G   +A+
Sbjct: 298 LKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAM 357

Query: 306 ELIESML---VEPDGAVWGALLGAC 327
           EL + M    +EPD     +L+ AC
Sbjct: 358 ELFKRMQLDGLEPDSNTLASLVVAC 382



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 137/292 (46%), Gaps = 1/292 (0%)

Query: 17  ALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKF 76
           A+ISG   N    EA+ LF  M   G+         +L  C     L +G   H + +K 
Sbjct: 241 AMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKL 300

Query: 77  GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY 136
           G   D  V N L+++Y   GS+     +F  + ++  +T+N +I+G +Q G     +EL+
Sbjct: 301 GFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELF 360

Query: 137 REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196
           + M+  G+ PD+ T   ++ +C+  G    G ++       GF SN  +  AL+N+YA+C
Sbjct: 361 KRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKC 420

Query: 197 GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL 256
            +++ A   F     + VV W  ++  YG+      + ++F +M    I P+   + S+L
Sbjct: 421 SDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSIL 480

Query: 257 SACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
             C   G  + G E  +    K   Q      + ++D+  + G+L+ A +++
Sbjct: 481 KTCIRLGDLELG-EQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDIL 531


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/508 (37%), Positives = 297/508 (58%), Gaps = 4/508 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + ++I+GYV +    EA++ F +M++ GV  +++ +      C     +  G+  H  
Sbjct: 413 VSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHAR 472

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               G   D S+ N L+ +Y +CG  +    LF ++  K  ITWN +ISG+ Q+ L    
Sbjct: 473 VYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQA 532

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L ++ +M   G   +  TF+  +S+ A+L     G +V  +    G  S   + NALI++
Sbjct: 533 LMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISL 592

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CG+++ A+ IF  M  +  VSW  II     HG G  A+ LFD+M + G++P+   F
Sbjct: 593 YGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTF 652

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + VL+ACSH GL ++GL YF  M N YGL P P+HY C+VD+LGRAGQL+ A   ++ M 
Sbjct: 653 IGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMP 712

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           +  +  +W  LL ACK+HKN+E+ ELA   +++LEP ++  YVLLSN Y+         +
Sbjct: 713 ITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQ 772

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML----DKLENLVQEHD 428
           VR MM++R ++K+PG S++E+K  VH F VGDR H  + +IY+ L    D+L  +  + +
Sbjct: 773 VRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQE 832

Query: 429 GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
                 +K  E+      VHSEKLA+AFG++   P   + V+KNLR+C DCH ++K  S+
Sbjct: 833 NPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKCTSE 892

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +  R+ ++RD  RFHHF SG CSC DYW
Sbjct: 893 VTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 168/318 (52%), Gaps = 2/318 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N ++  Y   S ++++  +FG+M+  G+  N  T  C+L  C   G + LG   H +
Sbjct: 312 VLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSL 371

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G + D  V   L+ MY K G +D  RK+ + + ++ +++W +MI+GY Q+      
Sbjct: 372 SIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEA 431

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L  ++EM+  GV PD +      S+CA + A   GL++  ++  +G+ ++  + N L+N+
Sbjct: 432 LATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNL 491

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YARCG  ++A ++F  +  K  ++W  +I G+G     + A+ +F +M ++G + +   F
Sbjct: 492 YARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTF 551

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +S +SA ++     +G +  +G   K G     E    ++ L G+ G + +A ++I S +
Sbjct: 552 ISAISALANLADIKQGKQ-VHGRAVKTGHTSETEVANALISLYGKCGSIEDA-KMIFSEM 609

Query: 313 VEPDGAVWGALLGACKIH 330
              +   W  ++ +C  H
Sbjct: 610 SLRNEVSWNTIITSCSQH 627



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 159/334 (47%), Gaps = 5/334 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N LISG+        A+ +F +M+  G+  + VT+  LL  C   G L  G   H  
Sbjct: 211 VTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSY 270

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G+  D+     L+ +YVKCG ++    +F+      ++ WN M+  Y Q       
Sbjct: 271 LLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKS 330

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            E++ +M++ G+ P+  T+  +L +C   G   +G ++      NGF S+ +++  LI+M
Sbjct: 331 FEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDM 390

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++ G L KAR I + + ++ VVSWT++I GY  H   E A+  F EM   G+ PD    
Sbjct: 391 YSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGL 450

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S  SAC+      +GL+  +      G       +  +V+L  R G+  EA  L    +
Sbjct: 451 ASAASACAGIKAMRQGLQ-IHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFRE-I 508

Query: 313 VEPDGAVWGALL---GACKIHKNVELAELAFGKV 343
              D   W  L+   G  +++K   +  +  G+ 
Sbjct: 509 EHKDEITWNGLISGFGQSRLYKQALMVFMKMGQA 542



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 162/372 (43%), Gaps = 37/372 (9%)

Query: 45  INSVTMLCLLPICVDPGYLW-LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRK 103
           + S  + C L  C   G  W L +  H   V  GL  D  +GN L+ +Y K G V   R+
Sbjct: 40  LGSADLTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQ 99

Query: 104 LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163
           +F ++  +  ++W AM+SGYAQ+GL      LY +M    V P       VLS+C     
Sbjct: 100 VFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKL 159

Query: 164 HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGG 223
            + G  +  Q+    F S  F+ NALI +Y   G+ K A  +F  M     V++  +I G
Sbjct: 160 FAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISG 219

Query: 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF-----YGMKNK 278
           +   GHGE A+Q+FDEM  SG+RPD     S+L+AC+  G   KG +        GM   
Sbjct: 220 HAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFD 279

Query: 279 Y-------------------------GLQPGPEHYTCMVDLLGRAGQLNEALELIESML- 312
           Y                         G +     +  M+   G+   L ++ E+   M  
Sbjct: 280 YITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQA 339

Query: 313 --VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV--LLSNIYSEARNLD 368
             + P+   +  +L  C     +EL E      IK     +  YV  +L ++YS+   LD
Sbjct: 340 TGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIK-NGFESDMYVSGVLIDMYSKYGCLD 398

Query: 369 GIMRVRMMMRER 380
              ++  M+ +R
Sbjct: 399 KARKILEMLEKR 410



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 159/343 (46%), Gaps = 4/343 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF E     H  V + A++SGY  + L  EA  L+ +M    V      +  +L  C   
Sbjct: 100 VFKELSSRDH--VSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKG 157

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
                G   H    K     +  VGN L+ +Y+  GS     ++F  +     +T+N +I
Sbjct: 158 KLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLI 217

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SG+AQ G     L+++ EM+  G+ PD VT   +L++CA +G    G ++   +   G  
Sbjct: 218 SGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMS 277

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            +     +L+++Y +CG+++ A  IF+   R  VV W  ++  YG       + ++F +M
Sbjct: 278 FDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQM 337

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
             +GI P+   +  +L  C+  G  + G E  + +  K G +        ++D+  + G 
Sbjct: 338 QATGIHPNQFTYPCILRTCTCTGQIELG-EQIHSLSIKNGFESDMYVSGVLIDMYSKYGC 396

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
           L++A +++E ML + D   W +++     H   E A   F ++
Sbjct: 397 LDKARKILE-MLEKRDVVSWTSMIAGYVQHDFCEEALATFKEM 438


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/529 (38%), Positives = 321/529 (60%), Gaps = 24/529 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD  ++ +   V +N +I  Y  N + SEA+ +F +MR +G + +  T+  +L  C   
Sbjct: 120 VFDGMLERS--LVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSAC--- 174

Query: 61  GYLWLGMCC---HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWN 117
           G     + C   HC+ +K  LDL+  VG  L+ +Y KCG ++   ++F+ + +K  +TW+
Sbjct: 175 GANCDALECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWS 234

Query: 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
           +M++GY Q+      L LYR  + + +  +  T   V+ +C++L A   G ++   I+ +
Sbjct: 235 SMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKS 294

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
           GFGSN F+ ++ ++MYA+CG+L+++  IF  +  K +  W  II G+  H   +  + LF
Sbjct: 295 GFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILF 354

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
           ++M + G+ P+   F S+LS C H GL ++G  +F  M+  YGL P   HY+CMVD+LGR
Sbjct: 355 EKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGR 414

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
           AG L+EA ELI+S+  EP  ++WG+LL +C++ KN+ELAE+A  K+ +LEP N G +VLL
Sbjct: 415 AGLLSEAYELIKSIPFEPTASIWGSLLASCRVCKNLELAEVAAKKLFELEPENAGNHVLL 474

Query: 358 SNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML 417
           SNIY+  +  + I + R ++R+  +KK  G S++++K +VH+F VG+ +H +  EI  ML
Sbjct: 475 SNIYAANKQWEEIAKSRKLLRDCDVKKVRGQSWIDIKDKVHIFRVGESSHPRIREICTML 534

Query: 418 DKLENLVQEHDGTKRSDQKNSEEH-LNDTEV---------HSEKLAIAFGIINTSPGTEI 467
           D   NLV E    ++   K S EH L+D E+         HSEKLA+ FG++    G+ +
Sbjct: 535 D---NLVIE---LRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPEGSTV 588

Query: 468 VVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +MKNLRIC DCH F+K  S    R  IVRDA RFHHF  G CSC ++W
Sbjct: 589 RIMKNLRICVDCHEFMKAASMATRRFIIVRDANRFHHFSDGHCSCGEFW 637



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 156/331 (47%), Gaps = 15/331 (4%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           +L +C   G +     CH   ++  L  D ++ N L+  Y KCG V+  R++FD + E+ 
Sbjct: 69  ILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGMLERS 128

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
           L++WN MI  Y +N + +  L+++ EM++ G      T   VLS+C   GA+   LE ++
Sbjct: 129 LVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSAC---GANCDALECKK 185

Query: 173 ---QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGH 229
                       N ++  AL+++YA+CG +  A  +F+ M  K+ V+W++++ GY    +
Sbjct: 186 LHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKN 245

Query: 230 GEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYT 289
            E A+ L+    +  +  +     SV+ ACS+     +G +  + +  K G        +
Sbjct: 246 YEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG-KQMHAVIRKSGFGSNVFVAS 304

Query: 290 CMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LE 347
             VD+  + G L E+  +I S + E +  +W  ++     H   +   + F K+ +  + 
Sbjct: 305 SAVDMYAKCGSLRESY-IIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMH 363

Query: 348 PMNTGYYVLLS-----NIYSEARNLDGIMRV 373
           P    +  LLS      +  E R    +MR 
Sbjct: 364 PNEVTFSSLLSVCGHTGLVEEGRRFFKLMRT 394


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/510 (41%), Positives = 304/510 (59%), Gaps = 7/510 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGV-EINSVTMLCLLPICVD 59
           VFD       +T  ++ALI G+VL S +++A  LF  M  QG+  ++  ++   L  C  
Sbjct: 180 VFDAMPARNEVT--WSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACAS 237

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
             +L +G   H +  K G+  D + GN L++MY K G +D    LFD++  K  ++++A+
Sbjct: 238 LDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSAL 297

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           +SGY QNG A     ++++M++  V PDA T V ++ +C+HL A   G      +   G 
Sbjct: 298 VSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGL 357

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            S   + NALI+MYA+CG +  +R +F+ MP + +VSW  +I GYGIHG G+ A  LF E
Sbjct: 358 ASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLE 417

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M   G  PDG  F+ +LSACSH+GL  +G  +F+ M + YGL P  EHY CMVDLL R G
Sbjct: 418 MNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGG 477

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
            L+EA E I+SM +  D  VW ALLGAC+++KN++L +     + +L P  TG +VLLSN
Sbjct: 478 FLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSN 537

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
           IYS A   D    VR++ + +  KK PG S++E+ G +H F+ GD++H Q+ EIYR LD 
Sbjct: 538 IYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDN 597

Query: 420 ----LENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRI 475
               ++ L  + D +        EE       HSEKLAIA+GI++ S    I V KNLR+
Sbjct: 598 ILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRV 657

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHF 505
           CGDCH  IK +S +  R  IVRDA RFHHF
Sbjct: 658 CGDCHTVIKHISLVKRRAIIVRDANRFHHF 687



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 164/331 (49%), Gaps = 15/331 (4%)

Query: 13  VCYNALISGYVLNSLVSEAVS--LFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
           V +NA+++GY  + +   AV+  L  +M+   +  N+ T++ LLP+    G L  G   H
Sbjct: 77  VAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVH 136

Query: 71  CICVKFGLDLDFS----------VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             C++  L  + +          +G  L+ MY KCGS+ Y R++FD +P +  +TW+A+I
Sbjct: 137 AYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALI 196

Query: 121 SGYAQNGLATHVLELYREMKSLGVC-PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
            G+      T    L++ M + G+C     +    L +CA L    +G ++   +  +G 
Sbjct: 197 GGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGV 256

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            ++    N+L++MYA+ G + +A A+FD M  K  VS++A++ GY  +G  E A  +F +
Sbjct: 257 HADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKK 316

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M    + PD    VS++ ACSH      G    +G     GL         ++D+  + G
Sbjct: 317 MQACNVEPDAATMVSLIPACSHLAALQHG-RCSHGSVIIRGLASETSICNALIDMYAKCG 375

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIH 330
           +++ + ++  +M+   D   W  ++    IH
Sbjct: 376 RIDLSRQVF-NMMPSRDIVSWNTMIAGYGIH 405



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 112/402 (27%), Positives = 166/402 (41%), Gaps = 71/402 (17%)

Query: 38  MREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS 97
           M    V  N+ T    L  C        G   H   +  GL  D  V   L+ MYVKC  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGL----ATHVLELYREMKSLGVCPDAVTFVG 153
           +     +F  +P + L+ WNAM++GYA +G+      H+L +  +M  L   P+A T V 
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLR--PNASTLVA 118

Query: 154 VLSSCAHLGAHSVGLEVE----------QQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
           +L   A  GA + G  V            +   +       L  AL++MYA+CG+L  AR
Sbjct: 119 LLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYAR 178

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML---------------------- 241
            +FD MP +  V+W+A+IGG+ +      A  LF  ML                      
Sbjct: 179 RVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASL 238

Query: 242 --------------KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH 287
                         KSG+  D TA  S+LS  + AGL D+ +  F  M  K  +      
Sbjct: 239 DHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS----- 293

Query: 288 YTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGACKIHKNVELAELAFGK-- 342
           Y+ +V    + G+  EA  + + M    VEPD A   +L+ AC       LA L  G+  
Sbjct: 294 YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACS-----HLAALQHGRCS 348

Query: 343 ----VIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380
               +I+     T     L ++Y++   +D   +V  MM  R
Sbjct: 349 HGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSR 390


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/515 (38%), Positives = 311/515 (60%), Gaps = 11/515 (2%)

Query: 10  HLTVCYNALISGYVLNSLVS-EAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           H  + + A+I+ YV +     EA+ LF KM    +  N  +   +L  C +    + G  
Sbjct: 316 HNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQ 375

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            +   VK G+     VGN L++MY + G ++  RK FD + EK L+++NA++ GYA+N  
Sbjct: 376 VYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLK 435

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
           +     L+ E+   G+   A TF  +LS  A +GA   G ++  ++   G+ SN  + NA
Sbjct: 436 SEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNA 495

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           LI+MY+RCGN++ A  +F+ M  + V+SWT++I G+  HG    A+++F +ML++G +P+
Sbjct: 496 LISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPN 555

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
              +V+VLSACSH G+  +G ++F  M  ++G+ P  EHY CMVDLLGR+G L EA+E I
Sbjct: 556 EITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFI 615

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
            SM +  D  VW  LLGAC++H N EL   A   +++ EP +   Y+LLSN+++ A    
Sbjct: 616 NSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWK 675

Query: 369 GIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHD 428
            ++++R  M+ER L K+ G S++E++ RVH F VG+ +H Q  +IY+ LD+L + ++E  
Sbjct: 676 DVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMG 735

Query: 429 GTKRSD-------QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHL 481
               +D       ++  E+ L     HSEK+A+AFG+I+TS    I + KNLR+CGDCH 
Sbjct: 736 YIPDTDFVLHDIEEEQKEQFLFQ---HSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHT 792

Query: 482 FIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            IK +S    R+ +VRD+ RFHH K+G CSC DYW
Sbjct: 793 AIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 827



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 105/338 (31%), Positives = 179/338 (52%), Gaps = 10/338 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++A++S +  NS+  +A+  F  M E G   N      ++  C +  Y W+G   +  
Sbjct: 112 VSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGF 171

Query: 73  CVKFG-LDLDFSVGNCLMTMYVKCGSVDYGR--KLFDQVPEKGLITWNAMISGYAQNGLA 129
            VK G L+ D  VG  L+ M+VK GS D G   K+FD++PE+ L+TW  MI+ +AQ G A
Sbjct: 172 VVKTGYLEADVCVGCELIDMFVK-GSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCA 230

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              ++L+ +M+  G  PD  T+  VLS+C  LG  ++G ++  ++   G   +  +  +L
Sbjct: 231 RDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSL 290

Query: 190 INMYARC---GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGH-GEVAVQLFDEMLKSGI 245
           ++MYA+C   G++  +R +F+ MP   V+SWTAII  Y   G   + A++LF +M+   I
Sbjct: 291 VDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHI 350

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
           RP+  +F SVL AC +      G E  Y    K G+         ++ +  R+G++ +A 
Sbjct: 351 RPNHFSFSSVLKACGNLSDPYTG-EQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDAR 409

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
           +  + +L E +   + A++     +   E A L F ++
Sbjct: 410 KAFD-ILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEI 446



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 157/328 (47%), Gaps = 9/328 (2%)

Query: 5   SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLW 64
           S+K+ +     N LI    +  L   A S    M +Q    +  T   LL  C+      
Sbjct: 3   SLKNPNFEPLKNRLIRQLDVGRL-HHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQ 61

Query: 65  LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK-GLITWNAMISGY 123
           LG   H   ++ GL+LD  V N L+++Y KCG  +  R +F+ +  K  L++W+AM+S +
Sbjct: 62  LGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCF 121

Query: 124 AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF-GSN 182
           A N +    +  + +M  LG  P+   F  V+ +C++     VG  +   +   G+  ++
Sbjct: 122 ANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEAD 181

Query: 183 PFLNNALINMYAR-CGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
             +   LI+M+ +  G+L  A  +FD MP + +V+WT +I  +   G    A+ LF +M 
Sbjct: 182 VCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDME 241

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA--- 298
            SG  PD   + SVLSAC+  GL   G +  +    + GL         +VD+  +    
Sbjct: 242 LSGYVPDRFTYSSVLSACTELGLLALGKQ-LHSRVIRLGLALDVCVGCSLVDMYAKCAAD 300

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGA 326
           G ++++ ++ E M  E +   W A++ A
Sbjct: 301 GSVDDSRKVFEQM-PEHNVMSWTAIITA 327


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/514 (38%), Positives = 299/514 (58%), Gaps = 16/514 (3%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
             C+NA++ GY++ +   +A+ LF  + + G + + +T+      C     L  G   H  
Sbjct: 1073 ACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAH 1132

Query: 73   CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             +K G D D  V + ++ MY+KCG +     +F+ +     + W +MISG   NG     
Sbjct: 1133 AIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQA 1192

Query: 133  LELYREMKSLGVCPDAVTFVGVL--SSCAHLGAHSVGLEVEQQIQANGFG----SNPFLN 186
            L +Y  M+   V PD  TF  ++  SSC         LE  +Q+ AN       S+PF+ 
Sbjct: 1193 LRIYHRMRQSRVMPDEYTFATLIKASSCV------TALEQGRQLHANVIKLDCVSDPFVG 1246

Query: 187  NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
             +L++MYA+CGN++ A  +F  M  + +  W A++ G   HG+ E AV LF  M   GI 
Sbjct: 1247 TSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIE 1306

Query: 247  PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
            PD  +F+ +LSACSHAGLT +  EY + M N YG++P  EHY+C+VD LGRAG + EA +
Sbjct: 1307 PDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADK 1366

Query: 307  LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366
            +IE+M  +   ++  ALLGAC+I  +VE  +    ++  LEP ++  YVLLSNIY+ A  
Sbjct: 1367 VIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANR 1426

Query: 367  LDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE 426
             D +   R MM+ + +KKDPG+S++++K  +HLF+V DR+H Q   IY  ++++   ++E
Sbjct: 1427 WDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIRE 1486

Query: 427  HDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLF 482
                  ++        EE       HSEKLAIA+G+I+T   T I V+KNLR+CGDCH  
Sbjct: 1487 DGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNA 1546

Query: 483  IKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            IK +SK+ +R+ ++RDA RFHHF+ G CSC DYW
Sbjct: 1547 IKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 1580



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 157/327 (48%), Gaps = 9/327 (2%)

Query: 14   CYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
            C+N  +S  +       A+  F  M    ++ ++VT+L +L        L LG   H I 
Sbjct: 871  CWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIA 930

Query: 74   VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
            VK GLD D SV N L+ MY K G   + R++F+ +    LI+WN+MIS  AQ+ L    +
Sbjct: 931  VKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESV 990

Query: 134  ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGS----NPFLNNAL 189
             L+ ++   G+ PD  T   VL +C+ L     GL + +QI  +   +    + F+   L
Sbjct: 991  NLFIDLLHEGLKPDHFTLASVLRACSSL---IDGLNISRQIHVHALKTGNIADSFVATTL 1047

Query: 190  INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
            I++Y++ G +++A  +F       +  W A++ GY I   G+ A++LF  + KSG + D 
Sbjct: 1048 IDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQ 1107

Query: 250  TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
                +   AC    L D+G +  +    K G        + ++D+  + G +  A  ++ 
Sbjct: 1108 ITLATAAKACGCLVLLDQGKQ-IHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNA-GIVF 1165

Query: 310  SMLVEPDGAVWGALLGACKIHKNVELA 336
            + +  PD   W +++  C  + N + A
Sbjct: 1166 NYISAPDDVAWTSMISGCVDNGNEDQA 1192



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 112/220 (50%), Gaps = 19/220 (8%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           LL   +    L LG C H   V  G   D  + N L+TMY KCGS+   R++FD  PE+ 
Sbjct: 627 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 686

Query: 113 LITWNAMISGYA-----QNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC-------AH 160
           L+TWNA++  YA      +G A   L L+R +++       +T   VL  C       A 
Sbjct: 687 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 746

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
            G H   +++       G   + F++ AL+N+Y++CG ++ AR +FD M  + VV W  +
Sbjct: 747 EGVHGYAIKI-------GLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMM 799

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
           + GY   G  + A QLF E  +SG+RPD  +   +L+  S
Sbjct: 800 LKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVS 839



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 163/351 (46%), Gaps = 9/351 (2%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPIC---VDPGYLWLGMCC 69
            + +N++IS    +SL  E+V+LF  +  +G++ +  T+  +L  C   +D   L +    
Sbjct: 971  ISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDG--LNISRQI 1028

Query: 70   HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
            H   +K G   D  V   L+ +Y K G ++    LF    +  L  WNAM+ GY      
Sbjct: 1029 HVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDG 1088

Query: 130  THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
               LEL+  +   G   D +T      +C  L     G ++       GF S+  +N+ +
Sbjct: 1089 KKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGI 1148

Query: 190  INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
            ++MY +CG++  A  +F+ +     V+WT++I G   +G+ + A++++  M +S + PD 
Sbjct: 1149 LDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDE 1208

Query: 250  TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
              F +++ A S     ++G +  +    K      P   T +VD+  + G + +A  L +
Sbjct: 1209 YTFATLIKASSCVTALEQGRQ-LHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFK 1267

Query: 310  SMLVEPDGAVWGALLGACKIHKNVELAELAFG--KVIKLEPMNTGYYVLLS 358
             M V  + A+W A+L     H N E A   F   K   +EP    +  +LS
Sbjct: 1268 KMNVR-NIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILS 1317



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 162/384 (42%), Gaps = 41/384 (10%)

Query: 1    VFDESIKSTHLTVCYNALISGYVL-----NSLVSEAVSLFGKMREQGVEINSVTMLCLLP 55
            VFD + +     V +NA++  Y       +    E + LF  +R        +T+  +L 
Sbjct: 678  VFDTTPERD--LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLK 735

Query: 56   ICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT 115
            +C++ G LW     H   +K GL+ D  V   L+ +Y KCG +   R LFD + E+ ++ 
Sbjct: 736  LCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVL 795

Query: 116  WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175
            WN M+ GY Q GL     +L+ E    G+ PD  +   +L+  + +     G  +  Q+Q
Sbjct: 796  WNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNWDE-GKWLADQVQ 854

Query: 176  ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQ 235
            A  + +   L++   +++  C N K +  ++ G       +W AI              +
Sbjct: 855  A--YAAKLSLSDDNPDVF--CWNKKLSECLWAG------DNWGAI--------------E 890

Query: 236  LFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL-EYFYGMKNKYGLQPGPEHYTCMVDL 294
             F  M    I  D    + VL+A   AG  D  L +  +G+  K GL         +V++
Sbjct: 891  CFVNMNGLNIDYDAVTLLVVLAAV--AGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNM 948

Query: 295  LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKL--EPMNTG 352
              + G    A E+   M    D   W +++ +C       L E +    I L  E +   
Sbjct: 949  YSKMGCAYFAREVFNDM-KHLDLISWNSMISSC---AQSSLEEESVNLFIDLLHEGLKPD 1004

Query: 353  YYVLLSNIYSEARNLDGIMRVRMM 376
            ++ L S + + +  +DG+   R +
Sbjct: 1005 HFTLASVLRACSSLIDGLNISRQI 1028


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/509 (42%), Positives = 300/509 (58%), Gaps = 9/509 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEI-NSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           ++ +IS Y  +    EA+ LF +MR+  V + N+ T   +L  C     L LG   H   
Sbjct: 274 WSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCV 333

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           +K GLD +  V N LM +Y KCG ++   KLF    EK  + WN +I GY Q G     L
Sbjct: 334 LKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKAL 393

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
            L+  M  L + P  VT+  VL + A L A   G ++        +  +  + N+LI+MY
Sbjct: 394 NLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMY 453

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
           A+CG +  AR  FD M ++  VSW A+I GY IHG G  A+ LFD M +S  +P+   FV
Sbjct: 454 AKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFV 513

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
            VLSACS+AGL DKG  +F  M   YG++P  EHYTCMV LLGR+GQ +EA++LI  +  
Sbjct: 514 GVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPF 573

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
           +P   VW ALLGAC IHKN++L ++   +V+++EP +   +VLLSN+Y+ A+  D +  V
Sbjct: 574 QPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLLSNMYATAKRWDNVAYV 633

Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS 433
           R  M+++++KK+PG S+VE +G VH F VGD +H     I+ ML+ L    +  D     
Sbjct: 634 RKNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSHPNIKLIFAMLEWLYK--KTRDAGYVP 691

Query: 434 DQKNSEEHLNDTE------VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           D       + D E      +HSE+LA+AFG+I    G  I ++KNLRIC DCH  IKLVS
Sbjct: 692 DCSVVLLDVEDDEKERLLWMHSERLALAFGLIQIPSGCSIRIIKNLRICVDCHAVIKLVS 751

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KIV R+ ++RD  RFHHF+ G CSC DYW
Sbjct: 752 KIVQREIVIRDINRFHHFRQGVCSCGDYW 780



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 148/325 (45%), Gaps = 5/325 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE   +   TV +  L  G+  +     A  L  ++  +G E+N      LL + V  
Sbjct: 60  LFDEMPLTN--TVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSM 117

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
                 +  H    K G   D  VG  L+  Y  CG+VD  R++FD +  K +++W  M+
Sbjct: 118 DLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMV 177

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           + YA+N      L L+ +M+ +G  P+  T    L SC  L A  VG  V        + 
Sbjct: 178 ACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYD 237

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            + ++  AL+ +Y + G + +A+  F+ MP+  ++ W+ +I  Y      + A++LF  M
Sbjct: 238 RDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRM 297

Query: 241 LKSG-IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
            +S  + P+   F SVL AC+   L + G +  +    K GL         ++D+  + G
Sbjct: 298 RQSSVVVPNNFTFASVLQACASLVLLNLGNQ-IHSCVLKVGLDSNVFVSNALMDVYAKCG 356

Query: 300 QLNEALELIESMLVEPDGAVWGALL 324
           ++  +++L      E +   W  ++
Sbjct: 357 EIENSVKLFTGS-TEKNEVAWNTII 380



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 115/234 (49%), Gaps = 7/234 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +I GYV      +A++LF  M    ++   VT   +L        L  G   H +
Sbjct: 374 VAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSL 433

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K   + D  V N L+ MY KCG +D  R  FD++ ++  ++WNA+I GY+ +GL    
Sbjct: 434 TIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEA 493

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           L L+  M+     P+ +TFVGVLS+C++ G    G     +     +G  P + +   ++
Sbjct: 494 LNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKG-RAHFKSMLQDYGIEPCIEHYTCMV 552

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGH---GEVAVQLFDEM 240
            +  R G   +A  +   +P + +V+ W A++G   IH +   G+V  Q   EM
Sbjct: 553 WLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEM 606



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 115/252 (45%), Gaps = 13/252 (5%)

Query: 66  GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
           G   HC  +K G  LD    N L+  YV  G ++   KLFD++P    +++  +  G+++
Sbjct: 22  GKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSR 81

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
           +        L   +   G   +   F  +L     +      L V   +   G  ++ F+
Sbjct: 82  SHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFV 141

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
             ALI+ Y+ CGN+  AR +FDG+  K +VSWT ++  Y  +   E ++ LF +M   G 
Sbjct: 142 GTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGY 201

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP----GPEHYT--CMVDLLGRAG 299
           RP+     + L +C+       GLE F   K+ +G         + Y    +++L  ++G
Sbjct: 202 RPNNFTISAALKSCN-------GLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSG 254

Query: 300 QLNEALELIESM 311
           ++ EA +  E M
Sbjct: 255 EIAEAQQFFEEM 266



 Score = 38.9 bits (89), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 71/182 (39%), Gaps = 8/182 (4%)

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF 206
           D+ ++  +L         + G  +   I  +G   + F  N L+N Y   G L+ A  +F
Sbjct: 2   DSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLF 61

Query: 207 DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD 266
           D MP    VS+  +  G+      + A +L   + + G   +   F ++L       L D
Sbjct: 62  DEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLAD 121

Query: 267 KGLE---YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGAL 323
             L    Y Y    K G Q      T ++D     G ++ A ++ + +  + D   W  +
Sbjct: 122 TCLSVHAYVY----KLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFK-DMVSWTGM 176

Query: 324 LG 325
           + 
Sbjct: 177 VA 178


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/524 (39%), Positives = 304/524 (58%), Gaps = 20/524 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD- 59
           +FDE  +     V +  +IS Y  N L  +A+     M  +GV  N  T   +L  C   
Sbjct: 112 LFDEMPERN--VVSWTTMISAYS-NKLNDKALKCLILMFREGVRPNMFTYSSVLRACDGL 168

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
           P    L    HC  +K GL+ D  V + L+ +Y K   +D    +FD++P + L+ WN++
Sbjct: 169 PNLRQL----HCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSI 224

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I G+AQN      L L++ MK  G   D  T   VL +C  L    +G +V   +    F
Sbjct: 225 IGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQV--HVHVLKF 282

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             +  LNNALI+MY +CG+L+ A + F  M  K V+SW+ ++ G   +G+   A++LF+ 
Sbjct: 283 DQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFES 342

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M +SG RP+    + VL ACSHAGL +KG  YF  MK  +G+ PG EHY C++DLLGRAG
Sbjct: 343 MKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAG 402

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
           +L+EA++LI  M  EPD   W  LLGAC++H+NV+LA  A  K+I+LEP + G Y+LLSN
Sbjct: 403 RLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSN 462

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
           IY+  +  + +  VR  M  R ++K PG S++E+  ++H+F++GD +H +  EI   + +
Sbjct: 463 IYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEEI---VQR 519

Query: 420 LENLVQEHDGTKRSDQKN-------SEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKN 472
           L +L++   G       N        E+  +    HSEKLAI FG++N S    + + KN
Sbjct: 520 LNDLIERVMGVGYVPDTNFVLQDLEGEQKEDSLRYHSEKLAIMFGLMNLSREKTVRIRKN 579

Query: 473 LRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           LRICGDCH+F K+VS++  R  ++RD  R+HHF+ G CSC DYW
Sbjct: 580 LRICGDCHVFAKVVSRMEHRSIVIRDPIRYHHFQDGVCSCGDYW 623



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 139/296 (46%), Gaps = 10/296 (3%)

Query: 31  AVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90
           A+     M   GV  +++T   L+  C   G +  G   H      G +    V N L+ 
Sbjct: 39  AMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLN 98

Query: 91  MYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVT 150
           MYVK   ++    LFD++PE+ +++W  MIS Y+ N L    L+    M   GV P+  T
Sbjct: 99  MYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYS-NKLNDKALKCLILMFREGVRPNMFT 157

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
           +  VL +C  L       ++   I   G  S+ F+ +ALI++Y++  +L  A  +FD MP
Sbjct: 158 YSSVLRACDGLPNLR---QLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMP 214

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270
            + +V W +IIGG+  +  G  A+ LF  M ++G   D     SVL AC+   L + G +
Sbjct: 215 TRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQ 274

Query: 271 -YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
            + + +K    L         ++D+  + G L +A     S +VE D   W  ++ 
Sbjct: 275 VHVHVLKFDQDLILN----NALIDMYCKCGSLEDANSAF-SRMVEKDVISWSTMVA 325



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 102/201 (50%), Gaps = 12/201 (5%)

Query: 131 HVLELYREMKSL------GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF 184
           H  +L+R M+++      GV  DA+T+  ++  C+  GA   G  V + I   G+    F
Sbjct: 32  HQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMF 91

Query: 185 LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
           + N L+NMY +   L++A  +FD MP + VVSWT +I  Y  +   + A++    M + G
Sbjct: 92  VVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYS-NKLNDKALKCLILMFREG 150

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
           +RP+   + SVL AC   GL +  L   +    K GL+      + ++D+  +   L+ A
Sbjct: 151 VRPNMFTYSSVLRACD--GLPN--LRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNA 206

Query: 305 LELIESMLVEPDGAVWGALLG 325
           L + + M    D  VW +++G
Sbjct: 207 LGVFDEMPTR-DLVVWNSIIG 226


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/506 (39%), Positives = 305/506 (60%), Gaps = 4/506 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NALI G   N    +A++L+ +M   G+  +  T+  LL        L  G   H   +
Sbjct: 305 WNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVL 364

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           + GL++D  +G  L+++Y+ CG     R LFD + EK  ++WNAMISGY+QNGL    L 
Sbjct: 365 RHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALI 424

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+R++ S G  P  +  V VL +C+   A  +G E            + F+  + I+MYA
Sbjct: 425 LFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYA 484

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           + G +K++R++FDG+  K + SW AII  YG+HG GE +++LF+ M K G  PDG  F+ 
Sbjct: 485 KSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIG 544

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           +L+ CSHAGL ++GL+YF  M+N +G++P  EHY C++D+LGRAG+L++AL L+  M  +
Sbjct: 545 ILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQ 604

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
           PD  VW +LL  C+    +E+ ++   K+++LEP N   YV LSN+Y+ +   D + RVR
Sbjct: 605 PDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVR 664

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLE----NLVQEHDGT 430
            M+++  L+KD G S++EL G+VH F+ GD    Q+ E+     KLE     +  + + +
Sbjct: 665 QMIKDIGLQKDAGCSWIELGGKVHSFVAGDNLLPQSKEMSMTWRKLEKKMCKIGYKPNTS 724

Query: 431 KRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIV 490
                 + E+ +     HSEKLAI FG++NT+ GT + + KNLRIC DCH   K +S++ 
Sbjct: 725 AVLHDVDEEKKIEKLRGHSEKLAICFGLLNTTKGTTLRIFKNLRICVDCHNASKFMSEVT 784

Query: 491 DRQFIVRDATRFHHFKSGFCSCKDYW 516
            R+ I+RD  RFHHFK G CSC DYW
Sbjct: 785 GREIIIRDNKRFHHFKDGLCSCGDYW 810



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 111/356 (31%), Positives = 180/356 (50%), Gaps = 9/356 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVD 59
           +FD++ +     V +N +I G      + EA +LF +M+ ++ +E+N VT+L +LP C++
Sbjct: 191 LFDKNNRKN--AVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLE 248

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              L      H   ++ G   D  V N  +  Y KCG +    ++F  +  K + +WNA+
Sbjct: 249 ISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNAL 308

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I G AQNG     L LY +M   G+ PD  T   +L + AHL +   G EV   +  +G 
Sbjct: 309 IGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGL 368

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             + F+  +L+++Y  CG    AR +FDGM  K+ VSW A+I GY  +G  E A+ LF +
Sbjct: 369 EIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRK 428

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTC-MVDLLGR 297
           ++  G +P   A VSVL ACS       G E + Y +K    L        C  +D+  +
Sbjct: 429 LVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALK---ALLMEDVFVACSTIDMYAK 485

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGY 353
           +G + E+  + +  L   D A W A++ A  +H + E +   F ++ K+  M  G+
Sbjct: 486 SGCIKESRSVFDG-LKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGF 540



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 95/307 (30%), Positives = 153/307 (49%), Gaps = 6/307 (1%)

Query: 25  NSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFS 83
           N L S+A+ +F K+  +     ++ T  C++  C       LG   H + +K GL LD  
Sbjct: 8   NELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVF 67

Query: 84  VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKS-- 141
           VGN L+ MY K G VD   K+F  +P + L++WN++ISG+++NG +    ++  EM +  
Sbjct: 68  VGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGE 127

Query: 142 LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKK 201
            G+ PD  T V VL  CA      +G+ +       G   +  +NN+L++MY++CG L +
Sbjct: 128 EGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTE 187

Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM-LKSGIRPDGTAFVSVLSACS 260
           A+ +FD   RK  VSW  +IGG    G+   A  LF EM ++  I  +    +++L AC 
Sbjct: 188 AQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACL 247

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320
                 + L+  +G   ++G Q         V    + G L  A  +  SM  +   + W
Sbjct: 248 EISQL-RSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNS-W 305

Query: 321 GALLGAC 327
            AL+G C
Sbjct: 306 NALIGGC 312



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 158/335 (47%), Gaps = 5/335 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMR--EQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
           V +N++ISG+  N    +   +  +M   E+G+  +  T++ +LP+C     + +G+  H
Sbjct: 98  VSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIH 157

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
            + VK GL  D  V N L+ MY KCG +   + LFD+   K  ++WN MI G    G   
Sbjct: 158 GLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIF 217

Query: 131 HVLELYREMK-SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
               L+REM+    +  + VT + +L +C  +       E+      +GF  +  + N  
Sbjct: 218 EAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGF 277

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           +  YA+CG L  A  +F  M  KTV SW A+IGG   +G    A+ L+ +M  SG+ PD 
Sbjct: 278 VAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDW 337

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
               S+L A +H      G E  +G   ++GL+        ++ L    G+ + A  L +
Sbjct: 338 FTIGSLLLASAHLKSLRYGKE-VHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFD 396

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI 344
            M  E     W A++     +   E A + F K++
Sbjct: 397 GM-EEKSSVSWNAMISGYSQNGLPEDALILFRKLV 430



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 105/203 (51%), Gaps = 3/203 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V +NA+ISGY  N L  +A+ LF K+   G + + + ++ +L  C     L LG   HC
Sbjct: 403 SVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHC 462

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K  L  D  V    + MY K G +   R +FD +  K L +WNA+I+ Y  +G    
Sbjct: 463 YALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEE 522

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--AL 189
            +EL+  M+ +G  PD  TF+G+L+ C+H G    GL+   ++Q N  G  P L +   +
Sbjct: 523 SIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQ-NFHGIEPKLEHYACV 581

Query: 190 INMYARCGNLKKARAIFDGMPRK 212
           ++M  R G L  A  +   MP +
Sbjct: 582 MDMLGRAGRLDDALRLVHEMPEQ 604


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/515 (38%), Positives = 311/515 (60%), Gaps = 11/515 (2%)

Query: 10  HLTVCYNALISGYVLNSLVS-EAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           H  + + A+I+ YV +     EA+ LF KM    +  N  +   +L  C +    + G  
Sbjct: 298 HNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQ 357

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            +   VK G+     VGN L++MY + G ++  RK FD + EK L+++NA++ GYA+N  
Sbjct: 358 VYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLK 417

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
           +     L+ E+   G+   A TF  +LS  A +GA   G ++  ++   G+ SN  + NA
Sbjct: 418 SEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNA 477

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           LI+MY+RCGN++ A  +F+ M  + V+SWT++I G+  HG    A+++F +ML++G +P+
Sbjct: 478 LISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPN 537

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
              +V+VLSACSH G+  +G ++F  M  ++G+ P  EHY CMVDLLGR+G L EA+E I
Sbjct: 538 EITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFI 597

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
            SM +  D  VW  LLGAC++H N EL   A   +++ EP +   Y+LLSN+++ A    
Sbjct: 598 NSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWK 657

Query: 369 GIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHD 428
            ++++R  M+ER L K+ G S++E++ RVH F VG+ +H Q  +IY+ LD+L + ++E  
Sbjct: 658 DVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMG 717

Query: 429 GTKRSD-------QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHL 481
               +D       ++  E+ L     HSEK+A+AFG+I+TS    I + KNLR+CGDCH 
Sbjct: 718 YIPDTDFVLHDIEEEQKEQFLFQ---HSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHT 774

Query: 482 FIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            IK +S    R+ +VRD+ RFHH K+G CSC DYW
Sbjct: 775 AIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 809



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 105/338 (31%), Positives = 179/338 (52%), Gaps = 10/338 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++A++S +  NS+  +A+  F  M E G   N      ++  C +  Y W+G   +  
Sbjct: 94  VSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGF 153

Query: 73  CVKFG-LDLDFSVGNCLMTMYVKCGSVDYGR--KLFDQVPEKGLITWNAMISGYAQNGLA 129
            VK G L+ D  VG  L+ M+VK GS D G   K+FD++PE+ L+TW  MI+ +AQ G A
Sbjct: 154 VVKTGYLEADVCVGCELIDMFVK-GSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCA 212

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              ++L+ +M+  G  PD  T+  VLS+C  LG  ++G ++  ++   G   +  +  +L
Sbjct: 213 RDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSL 272

Query: 190 INMYARC---GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGH-GEVAVQLFDEMLKSGI 245
           ++MYA+C   G++  +R +F+ MP   V+SWTAII  Y   G   + A++LF +M+   I
Sbjct: 273 VDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHI 332

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
           RP+  +F SVL AC +      G E  Y    K G+         ++ +  R+G++ +A 
Sbjct: 333 RPNHFSFSSVLKACGNLSDPYTG-EQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDAR 391

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
           +  + +L E +   + A++     +   E A L F ++
Sbjct: 392 KAFD-ILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEI 428



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 147/302 (48%), Gaps = 8/302 (2%)

Query: 31  AVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90
           A S    M +Q    +  T   LL  C+      LG   H   ++ GL+LD  V N L++
Sbjct: 10  AFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLIS 69

Query: 91  MYVKCGSVDYGRKLFDQVPEK-GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
           +Y KCG  +  R +F+ +  K  L++W+AM+S +A N +    +  + +M  LG  P+  
Sbjct: 70  LYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEY 129

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGF-GSNPFLNNALINMYAR-CGNLKKARAIFD 207
            F  V+ +C++     VG  +   +   G+  ++  +   LI+M+ +  G+L  A  +FD
Sbjct: 130 CFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFD 189

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            MP + +V+WT +I  +   G    A+ LF +M  SG  PD   + SVLSAC+  GL   
Sbjct: 190 KMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLAL 249

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA---GQLNEALELIESMLVEPDGAVWGALL 324
           G +  +    + GL         +VD+  +    G ++++ ++ E M  E +   W A++
Sbjct: 250 GKQ-LHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQM-PEHNVMSWTAII 307

Query: 325 GA 326
            A
Sbjct: 308 TA 309



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 105/249 (42%), Gaps = 43/249 (17%)

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
           H       M      PD  T+  +L SC       +G  V +++  +G   +  + N LI
Sbjct: 9   HAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLI 68

Query: 191 NMYARCGNLKKARAIFDGM-PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++Y++CG+ + AR IF+GM  ++ +VSW+A++  +  +     A+  F +ML+ G  P+ 
Sbjct: 69  SLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNE 128

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYG----------------------------- 280
             F +V+ ACS+A     G E  YG   K G                             
Sbjct: 129 YCFAAVIRACSNANYAWVG-EIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKV 187

Query: 281 LQPGPEH----YTCMVDLLGRAGQLNEALELIESMLVE---PDGAVWGALLGACKIHKNV 333
               PE     +T M+    + G   +A++L   M +    PD   + ++L AC      
Sbjct: 188 FDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC-----T 242

Query: 334 ELAELAFGK 342
           EL  LA GK
Sbjct: 243 ELGLLALGK 251


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/544 (38%), Positives = 317/544 (58%), Gaps = 61/544 (11%)

Query: 30  EAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGL-DLDFSVGNC 87
           +A+ +F +M  E  VE N  T   +L  C     L  G   H + +KFGL D +F V N 
Sbjct: 99  DALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFGLVDDEFVVTN- 157

Query: 88  LMTMYVKCGSVD-----------------------------------------------Y 100
           L+ MYV CGS++                                                
Sbjct: 158 LLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYARVGNLKA 217

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG-VCPDAVTFVGVLSSCA 159
            R+LFD++ ++ +++WN MISGYAQNG     +E++  M  +G V P+ VT V VL + +
Sbjct: 218 ARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAIS 277

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
            LG   +G  V    + N    +  L +AL++MYA+CG+++KA  +F+ +P+  V++W A
Sbjct: 278 RLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNA 337

Query: 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279
           +IGG  +HG           M K GI P    ++++LSACSHAGL D+G  +F  M N  
Sbjct: 338 VIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSV 397

Query: 280 GLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELA 339
           GL+P  EHY CMVDLLGRAG L EA ELI +M ++PD  +W ALLGA K+HKN+++   A
Sbjct: 398 GLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMRA 457

Query: 340 FGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHL 399
              ++++ P ++G YV LSN+Y+ + N DG+  VR+MM++  ++KDPG S++E+ G +H 
Sbjct: 458 AEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRLMMKDMDIRKDPGCSWIEIDGVIHE 517

Query: 400 FMVGDRNHHQTVEIYRMLDKLENLVQEH----DGTK---RSDQKNSEEHLNDTEVHSEKL 452
           F+V D +H +  +I+ ML+++ N +       D T+   + D+K+ E  L+    HSEK+
Sbjct: 518 FLVEDDSHSRAKDIHSMLEEISNKLSLEGHMPDTTQVLLKMDEKHKESVLH---YHSEKI 574

Query: 453 AIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSC 512
           A+AFG+I+T P T + ++KNLRIC DCH  +KL+SK+ +R+ ++RD  RFHHF+ G CSC
Sbjct: 575 AVAFGLISTPPKTPLCIVKNLRICEDCHSSMKLISKMYERKIVIRDRKRFHHFEHGSCSC 634

Query: 513 KDYW 516
            DYW
Sbjct: 635 MDYW 638



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 141/270 (52%), Gaps = 8/270 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVD 59
           +FD   + +   V +N +ISGY  N    EA+ +F +M + G V  N VT++ +LP    
Sbjct: 221 LFDRMAQRS--VVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISR 278

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
            G L LG   H    K  + +D  +G+ L+ MY KCGS++   ++F+++P+  +ITWNA+
Sbjct: 279 LGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAV 338

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I G A +G A  +      M+  G+ P  VT++ +LS+C+H G    G      +  N  
Sbjct: 339 IGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDM-VNSV 397

Query: 180 GSNPFLNN--ALINMYARCGNLKKARAIFDGMPRKT-VVSWTAIIGGYGIHGHGEVAVQL 236
           G  P + +   ++++  R G L++A  +   MP K   V W A++G   +H + ++ ++ 
Sbjct: 398 GLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMRA 457

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTD 266
             E+L      D  A+V++ +  + +G  D
Sbjct: 458 A-EVLMQMAPHDSGAYVALSNMYASSGNWD 486



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 147/347 (42%), Gaps = 64/347 (18%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKL--FDQVPEKGLITWNAMISGYA--Q 125
           H   VK G   D ++   ++ +       D G  L  FDQ+PE+    WN +I   A  Q
Sbjct: 35  HAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPERNCFAWNTVIRALAETQ 94

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF- 184
           +     +L   + +    V P+  TF  VL +CA +   + G +V   +   G   + F 
Sbjct: 95  DRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFGLVDDEFV 154

Query: 185 ----------------------------------------------LNNALINMYARCGN 198
                                                         L N +++ YAR GN
Sbjct: 155 VTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYARVGN 214

Query: 199 LKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG-IRPDGTAFVSVLS 257
           LK AR +FD M +++VVSW  +I GY  +G  + A+++F  M++ G + P+    VSVL 
Sbjct: 215 LKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLP 274

Query: 258 ACSHAGLTDKG-LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPD 316
           A S  G+ + G   + Y  KNK  ++      + +VD+  + G + +A+++ E  L + +
Sbjct: 275 AISRLGVLELGKWVHLYAEKNK--IRIDDVLGSALVDMYAKCGSIEKAIQVFER-LPQNN 331

Query: 317 GAVWGALLGACKIHKNVELAELAFGKVIKLE-----PMNTGYYVLLS 358
              W A++G   +H     A   F  + ++E     P +  Y  +LS
Sbjct: 332 VITWNAVIGGLAMHGK---ANDIFNYLSRMEKCGISPSDVTYIAILS 375


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/515 (38%), Positives = 310/515 (60%), Gaps = 11/515 (2%)

Query: 10  HLTVCYNALISGYVLNSLVS-EAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           H  + + A+I+ Y  +     EA+ LF KM    +  N  +   +L  C +    + G  
Sbjct: 118 HNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQ 177

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            +   VK G+     VGN L++MY + G ++  RK FD + EK L+++NA++ GYA+N  
Sbjct: 178 VYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLK 237

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
           +     L+ E+   G+   A TF  +LS  A +GA   G ++  ++   G+ SN  + NA
Sbjct: 238 SEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNA 297

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           LI+MY+RCGN++ A  +F+ M  + V+SWT++I G+  HG    A+++F +ML++G +P+
Sbjct: 298 LISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPN 357

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
              +V+VLSACSH G+  +G ++F  M  ++G+ P  EHY CMVDLLGR+G L EA+E I
Sbjct: 358 EITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFI 417

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
            SM +  D  VW  LLGAC++H N EL   A   +++ EP +   Y+LLSN+++ A    
Sbjct: 418 NSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWK 477

Query: 369 GIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHD 428
            ++++R  M+ER L K+ G S++E++ RVH F VG+ +H Q  +IY+ LD+L + ++E  
Sbjct: 478 DVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMG 537

Query: 429 GTKRSD-------QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHL 481
               +D       ++  E+ L     HSEK+A+AFG+I+TS    I + KNLR+CGDCH 
Sbjct: 538 YIPDTDFVLHDIEEEQKEQFLFQ---HSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHT 594

Query: 482 FIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            IK +S    R+ +VRD+ RFHH K+G CSC DYW
Sbjct: 595 AIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 629



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/352 (30%), Positives = 170/352 (48%), Gaps = 8/352 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  +I+ +       +A+ LF  M   G   +  T   +L  C + G L LG   H  
Sbjct: 17  VTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSR 76

Query: 73  CVKFGLDLDFSVGNCLMTMYVKC---GSVDYGRKLFDQVPEKGLITWNAMISGYAQNG-L 128
            ++ GL LD  VG  L+ MY KC   GSVD  RK+F+Q+PE  +++W A+I+ YAQ+G  
Sbjct: 77  VIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGEC 136

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
               +EL+ +M S  + P+  +F  VL +C +L     G +V       G  S   + N+
Sbjct: 137 DKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNS 196

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           LI+MYAR G ++ AR  FD +  K +VS+ AI+ GY  +   E A  LF+E+  +GI   
Sbjct: 197 LISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGIS 256

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
              F S+LS  +  G   KG E  +G   K G +        ++ +  R G +  A ++ 
Sbjct: 257 AFTFASLLSGAASIGAMGKG-EQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVF 315

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
             M  + +   W +++     H     A   F K+++   +P    Y  +LS
Sbjct: 316 NEM-EDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLS 366



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 133/245 (54%), Gaps = 6/245 (2%)

Query: 103 KLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162
           K+FD++PE+ L+TW  MI+ +AQ G A   ++L+ +M+  G  PD  T+  VLS+C  LG
Sbjct: 6   KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELG 65

Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARC---GNLKKARAIFDGMPRKTVVSWTA 219
             ++G ++  ++   G   +  +  +L++MYA+C   G++  +R +F+ MP   V+SWTA
Sbjct: 66  LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTA 125

Query: 220 IIGGYGIHGH-GEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278
           II  Y   G   + A++LF +M+   IRP+  +F SVL AC +      G E  Y    K
Sbjct: 126 IITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTG-EQVYSYAVK 184

Query: 279 YGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAEL 338
            G+         ++ +  R+G++ +A +  + +L E +   + A++     +   E A L
Sbjct: 185 LGIASVNCVGNSLISMYARSGRMEDARKAFD-ILFEKNLVSYNAIVDGYAKNLKSEEAFL 243

Query: 339 AFGKV 343
            F ++
Sbjct: 244 LFNEI 248



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 77/183 (42%), Gaps = 39/183 (21%)

Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261
           A  +FD MP + +V+WT +I  +   G    A+ LF +M  SG  PD   + SVLSAC+ 
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 262 AGLTDKGLEYFYGMKNKYGL------------------------------QPGPEH---- 287
            GL   G +  +    + GL                              +  PEH    
Sbjct: 64  LGLLALGKQ-LHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 122

Query: 288 YTCMVDLLGRAGQLN-EALELIESML---VEPDGAVWGALLGACKIHKNVELAELAFGKV 343
           +T ++    ++G+ + EA+EL   M+   + P+   + ++L AC    +    E  +   
Sbjct: 123 WTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYA 182

Query: 344 IKL 346
           +KL
Sbjct: 183 VKL 185


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/522 (41%), Positives = 311/522 (59%), Gaps = 7/522 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVD 59
           +FDE     ++ + +N LI  Y  +     A+ L+ +M   G +E ++ T   +L  C  
Sbjct: 120 LFDEMPNQGNVFL-WNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAA 178

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              L  G   H   ++     D  V   L+ MY KCG VD    +FD    +  + WN+M
Sbjct: 179 LLDLGAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSM 238

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I+   QNG     L L R M + G+ P  VT V  +S+ A  GA   G E+       GF
Sbjct: 239 IAACGQNGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGF 298

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
           GS   L  +L++MYA+ G +  AR +FD +  + ++SW A+I G+G+HGH + A +LF  
Sbjct: 299 GSQDKLKTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRR 358

Query: 240 ML-KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
           M  ++ + PD   FV VLSAC+H G+  +  E F  M   Y ++P  +HYTC+VD+LG +
Sbjct: 359 MRNEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVLGHS 418

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           G+  EA ++I+ MLV+PD  +WGALL  CKIHKNVELAELA  K+I+LEP + G YVLLS
Sbjct: 419 GRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALHKLIELEPEDAGNYVLLS 478

Query: 359 NIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD 418
           NIY+++   +   RVR +M  R LKK    S++ELKG+ H F+VGD +H ++ EIY  L+
Sbjct: 479 NIYAQSGKWEEAARVRKLMTNRGLKKIIACSWIELKGKSHGFLVGDASHPRSDEIYEELE 538

Query: 419 KLENLVQE----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLR 474
           +LE L+ +     D T        +E  N    HSE+LAIAFG+I+T PGT+++V KNLR
Sbjct: 539 RLEGLISQTGYVPDTTSVFHNVEDDEKRNMVRGHSERLAIAFGLISTPPGTKLLVTKNLR 598

Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +C DCH+ IKL+S+I  R+ I+RD  R+HHF +G CSCKD+W
Sbjct: 599 VCEDCHVVIKLISQIEQREIIIRDVNRYHHFVNGECSCKDHW 640



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/296 (31%), Positives = 148/296 (50%), Gaps = 13/296 (4%)

Query: 46  NSVTML--CLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRK 103
           N  T+L  C+L   V PG        H   +  GL LD  +   L+ +Y  CG V   R+
Sbjct: 65  NYATILRSCVLSRAVRPGRQ-----LHARLLVSGLGLDAVLATRLVDLYASCGLVSVARR 119

Query: 104 LFDQVPEKG-LITWNAMISGYAQNGLATHVLELYREMKSLG-VCPDAVTFVGVLSSCAHL 161
           LFD++P +G +  WN +I  YA++G     +ELYREM + G + PD  T+  VL +CA L
Sbjct: 120 LFDEMPNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAAL 179

Query: 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
                G EV  ++    + ++ F+   LI+MYA+CG + +A A+FD    +  V W ++I
Sbjct: 180 LDLGAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMI 239

Query: 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYG 280
              G +G    A+ L   M   GI P     VS +SA + AG   +G E + YG +  +G
Sbjct: 240 AACGQNGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFG 299

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELA 336
            Q   +  T ++D+  ++G +  A  L +  L   +   W A++    +H + + A
Sbjct: 300 SQDKLK--TSLLDMYAKSGWVTVARVLFDQ-LFHRELISWNAMICGFGMHGHADHA 352


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/503 (40%), Positives = 300/503 (59%), Gaps = 9/503 (1%)

Query: 23  VLNSLVSEAV----SLFGKMREQGVEI-NSVTMLCLLPICVDPGYLWLGMCCHCICVKFG 77
           V N + S+ +    ++ G M+E    I + +TM+ LLP C   G L  G   H   ++  
Sbjct: 282 VFNRIYSKNIVAWNAMIGGMQEDDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKM 341

Query: 78  LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYR 137
                 +   L+ MY KCG +     +F+Q+ EK +++WN M++ Y QN      L++++
Sbjct: 342 FLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQ 401

Query: 138 EMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG 197
            + +  + PDA+T   VL + A L + S G ++   I   G GSN F++NA++ MYA+CG
Sbjct: 402 HILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCG 461

Query: 198 NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257
           +L+ AR  FDGM  K VVSW  +I  Y IHG G  ++Q F EM   G +P+G+ FVS+L+
Sbjct: 462 DLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLT 521

Query: 258 ACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDG 317
           ACS +GL D+G  +F  MK +YG+ PG EHY CM+DLLGR G L+EA   IE M + P  
Sbjct: 522 ACSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDEAKCFIEEMPLVPTA 581

Query: 318 AVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMM 377
            +WG+LL A + H +V LAELA   ++ L+  NTG YVLLSN+Y+EA   + + R++ +M
Sbjct: 582 RIWGSLLAASRNHNDVVLAELAARHILSLKHDNTGCYVLLSNMYAEAGRWEDVDRIKYLM 641

Query: 378 RERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----HDGTKRS 433
           +E+ L K  G S V++ GR   F+  DR+H  T  IY +LD L   + E    H  TK  
Sbjct: 642 KEQGLVKTVGCSMVDINGRSESFINQDRSHAHTNLIYDVLDILLKKIGEDIYLHSLTKFR 701

Query: 434 DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQ 493
               +++  N  E HS KLAI FG+I+T+ G  ++V KN RIC DCH   K +S++  R+
Sbjct: 702 PLDVAKKRGNSPEYHSVKLAICFGLISTAIGNPVIVRKNTRICDDCHRAAKKISQVTKRE 761

Query: 494 FIVRDATRFHHFKSGFCSCKDYW 516
            +V DA  FHHF+ G CSC+DYW
Sbjct: 762 IVVGDAKVFHHFRDGCCSCRDYW 784



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 159/315 (50%), Gaps = 17/315 (5%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T  +N +I GY  N L  EA+  + +M  +G+  ++ T   ++  C +   L +G   H 
Sbjct: 89  TFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVIKACGELLALMVGQKVHG 148

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K G DLD  V N L+ MY+K G ++   K+FD++P + L++WN+M+SGY  +G    
Sbjct: 149 KLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLS 208

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L  ++EM  LG   D    +  L +C+       G+E+  Q+  +    +  +  +LI+
Sbjct: 209 SLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLID 268

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY +CG +  A  +F+ +  K +V+W A+IGG          +Q  D+++     PD   
Sbjct: 269 MYGKCGKVDYAERVFNRIYSKNIVAWNAMIGG----------MQEDDKVI-----PDVIT 313

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            +++L +CS +G   +G +  +G   +    P     T +VD+ G+ G+L  A E + + 
Sbjct: 314 MINLLPSCSQSGALLEG-KSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLA-EHVFNQ 371

Query: 312 LVEPDGAVWGALLGA 326
           + E +   W  ++ A
Sbjct: 372 MNEKNMVSWNTMVAA 386



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 120/234 (51%), Gaps = 2/234 (0%)

Query: 92  YVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTF 151
           +V+ G +     +F+++       WN +I GY  NGL    ++ Y  M+  G+  D  TF
Sbjct: 68  FVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTF 127

Query: 152 VGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR 211
             V+ +C  L A  VG +V  ++   GF  + ++ N LI+MY + G ++ A  +FD MP 
Sbjct: 128 PFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPV 187

Query: 212 KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEY 271
           + +VSW +++ GY I G G  ++  F EML+ G + D    +S L ACS       G+E 
Sbjct: 188 RDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGME- 246

Query: 272 FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
            +    +  L+      T ++D+ G+ G+++ A E + + +   +   W A++G
Sbjct: 247 IHCQVIRSELELDIMVQTSLIDMYGKCGKVDYA-ERVFNRIYSKNIVAWNAMIG 299



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 109/218 (50%), Gaps = 4/218 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +++ YV N    EA+ +F  +  + ++ +++T+  +LP   +      G   H  
Sbjct: 378 VSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSY 437

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K GL  +  + N ++ MY KCG +   R+ FD +  K +++WN MI  YA +G     
Sbjct: 438 IMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTS 497

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           ++ + EM+  G  P+  TFV +L++C+  G    G      ++   +G +P + +   ++
Sbjct: 498 IQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVE-YGIDPGIEHYGCML 556

Query: 191 NMYARCGNLKKARAIFDGMPR-KTVVSWTAIIGGYGIH 227
           ++  R GNL +A+   + MP   T   W +++     H
Sbjct: 557 DLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAASRNH 594


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/508 (38%), Positives = 287/508 (56%), Gaps = 4/508 (0%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
            V +  +I+GY   +   +A++ F +M ++G+  + V +   +  C     L  G   H  
Sbjct: 557  VSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQ 616

Query: 73   CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
                G   D    N L+T+Y +CG ++     F+Q      I WNA++SG+ Q+G     
Sbjct: 617  ACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEA 676

Query: 133  LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            L ++  M   G+  +  TF   + + +       G +V   I   G+ S   + NALI+M
Sbjct: 677  LRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISM 736

Query: 193  YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
            YA+CG++  A   F  +  K  VSW AII  Y  HG G  A+  FD+M+ S +RP+    
Sbjct: 737  YAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTL 796

Query: 253  VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            V VLSACSH GL DKG+ YF  M ++YGL P PEHY C+VD+L RAG L+ A E I+ M 
Sbjct: 797  VGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMP 856

Query: 313  VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            ++PD  VW  LL AC +HKN+E+ E A   +++LEP ++  YVLLSN+Y+ ++  D    
Sbjct: 857  IKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDL 916

Query: 373  VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----HD 428
             R  M+E+ +KK+PG S++E+K  +H F VGD+NH    EI+     L     E     D
Sbjct: 917  TRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQD 976

Query: 429  GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
                 ++   E+      +HSEKLAI+FG+++      I VMKNLR+C DCH +IK VSK
Sbjct: 977  CFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSK 1036

Query: 489  IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            + +R+ IVRDA RFHHF+ G CSCKDYW
Sbjct: 1037 VSNREIIVRDAYRFHHFEGGACSCKDYW 1064



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 144/329 (43%), Gaps = 2/329 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V YN LI+G        +A+ LF +M   G+E +S T+  L+  C   G L+ G   H 
Sbjct: 354 AVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHA 413

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              K G   +  +   L+ +Y KC  ++     F +   + ++ WN M+  Y       +
Sbjct: 414 YTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRN 473

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
              ++R+M+   + P+  T+  +L +C  LG   +G ++  QI    F  N ++ + LI+
Sbjct: 474 SFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLID 533

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+ G L  A  I      K VVSWT +I GY  +   + A+  F +ML  GIR D   
Sbjct: 534 MYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVG 593

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
             + +SAC+      +G +  +      G          +V L  R G++ E+    E  
Sbjct: 594 LTNAVSACAGLQALKEG-QQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQT 652

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAF 340
               D   W AL+   +   N E A   F
Sbjct: 653 EA-GDNIAWNALVSGFQQSGNNEEALRVF 680



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 155/328 (47%), Gaps = 7/328 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  + T  T  +N +I      +L+ E   LF +M  + V  N  T   +L  C   
Sbjct: 142 VFDEMPERTIFT--WNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC-RG 198

Query: 61  GYLWLGMC--CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
           G +   +    H   +  GL     V N L+ +Y + G VD  R++FD +  K   +W A
Sbjct: 199 GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVA 258

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           MISG ++N      + L+ +M  LG+ P    F  VLS+C  + +  +G ++   +   G
Sbjct: 259 MISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 318

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
           F S+ ++ NAL+++Y   GNL  A  IF  M ++  V++  +I G    G+GE A++LF 
Sbjct: 319 FSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK 378

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
            M   G+ PD     S++ ACS  G   +G +  +    K G     +    +++L  + 
Sbjct: 379 RMHLDGLEPDSNTLASLVVACSADGTLFRG-QQLHAYTTKLGFASNNKIEGALLNLYAKC 437

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGA 326
             +  AL+      VE +  +W  +L A
Sbjct: 438 ADIETALDYFLETEVE-NVVLWNVMLVA 464



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 148/321 (46%), Gaps = 8/321 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N ++  Y L   +  +  +F +M+ + +  N  T   +L  C+  G L LG   H  
Sbjct: 456 VLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQ 515

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K    L+  V + L+ MY K G +D    +  +   K +++W  MI+GY Q       
Sbjct: 516 IIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKA 575

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L  +R+M   G+  D V     +S+CA L A   G ++  Q   +GF S+    NAL+ +
Sbjct: 576 LTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTL 635

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y+RCG ++++   F+       ++W A++ G+   G+ E A+++F  M + GI  +   F
Sbjct: 636 YSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTF 695

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S + A S      +G +  + +  K G     E    ++ +  + G +++A    E   
Sbjct: 696 GSAVKAASETANMKQGKQ-VHAVITKTGYDSETEVCNALISMYAKCGSISDA----EKQF 750

Query: 313 VE---PDGAVWGALLGACKIH 330
           +E    +   W A++ A   H
Sbjct: 751 LEVSTKNEVSWNAIINAYSKH 771



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 104/324 (32%), Positives = 150/324 (46%), Gaps = 18/324 (5%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGK----MREQGVEINSVTMLCLLPICVDP-GYLWLG 66
           T+C     S   ++  +SE  S   K    +  +G+  N  T+  LL  C+   G L  G
Sbjct: 45  TLCGTRRASFAAISVYISEDESFQEKRIDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEG 104

Query: 67  MCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQN 126
              H   +K GLD +  +   L   Y+  G +    K+FD++PE+ + TWN MI   A  
Sbjct: 105 RKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASR 164

Query: 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA----NGFGSN 182
            L   V  L+  M S  V P+  TF GVL +C      SV  +V +QI A     G   +
Sbjct: 165 NLIGEVFGLFVRMVSENVTPNEGTFSGVLEACR---GGSVAFDVVEQIHARILYQGLRDS 221

Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
             + N LI++Y+R G +  AR +FDG+  K   SW A+I G   +     A++LF +M  
Sbjct: 222 TVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYV 281

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC--MVDLLGRAGQ 300
            GI P   AF SVLSAC      + G E  +G+  K G     + Y C  +V L    G 
Sbjct: 282 LGIMPTPYAFSSVLSACKKIESLEIG-EQLHGLVLKLGF--SSDTYVCNALVSLYFHLGN 338

Query: 301 LNEALELIESMLVEPDGAVWGALL 324
           L  A E I S + + D   +  L+
Sbjct: 339 LISA-EHIFSNMSQRDAVTYNTLI 361



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 137/292 (46%), Gaps = 1/292 (0%)

Query: 17  ALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKF 76
           A+ISG   N   +EA+ LF  M   G+         +L  C     L +G   H + +K 
Sbjct: 258 AMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKL 317

Query: 77  GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY 136
           G   D  V N L+++Y   G++     +F  + ++  +T+N +I+G +Q G     +EL+
Sbjct: 318 GFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELF 377

Query: 137 REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196
           + M   G+ PD+ T   ++ +C+  G    G ++       GF SN  +  AL+N+YA+C
Sbjct: 378 KRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKC 437

Query: 197 GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL 256
            +++ A   F     + VV W  ++  YG+      + ++F +M    I P+   + S+L
Sbjct: 438 ADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSIL 497

Query: 257 SACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
             C   G  + G E  +    K   Q      + ++D+  + G+L+ A +++
Sbjct: 498 KTCIRLGDLELG-EQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL 548



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 4/189 (2%)

Query: 139 MKSLGVCPDAVTFVGVLSSCAHL-GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG 197
           +++ G+ P+  T   +L  C    G+   G ++  QI   G  SN  L+  L + Y   G
Sbjct: 75  VENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKG 134

Query: 198 NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGH-GEVAVQLFDEMLKSGIRPDGTAFVSVL 256
           +L  A  +FD MP +T+ +W  +I         GEV   LF  M+   + P+   F  VL
Sbjct: 135 DLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEV-FGLFVRMVSENVTPNEGTFSGVL 193

Query: 257 SACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPD 316
            AC    +    +E  +      GL+        ++DL  R G ++ A  + + + ++ D
Sbjct: 194 EACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLK-D 252

Query: 317 GAVWGALLG 325
            + W A++ 
Sbjct: 253 HSSWVAMIS 261



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 2/117 (1%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           ST   V +NA+I+ Y  +   SEA+  F +M    V  N VT++ +L  C   G +  G+
Sbjct: 754 STKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGI 813

Query: 68  C-CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK-GLITWNAMISG 122
                +  ++GL        C++ M  + G +   ++   ++P K   + W  ++S 
Sbjct: 814 AYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSA 870


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/520 (39%), Positives = 302/520 (58%), Gaps = 6/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE    +  TV + ALI+ Y+    + EAV +       G+  +S T + +L  C   
Sbjct: 175 VFDEMPHPS--TVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARV 232

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G        + G+     V    + +YVKCG +   R++FD++ +K  + W AM+
Sbjct: 233 ADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMV 292

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GYA NG     L+L+  M++ GV PD     G LS+C  LGA  +G +  + +  + F 
Sbjct: 293 GGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFL 352

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            NP L  ALI+MYA+CG+  +A  +F  M +K ++ W A+I G G+ GH + A  L  +M
Sbjct: 353 DNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQM 412

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            KSG++ +   F+ +L +C+H GL   G  YF+ M   Y + P  EHY C+VDLL RAG 
Sbjct: 413 EKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGL 472

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L EA +LI+ M +  +  + GALLG CKIH+N ELAE    ++I+LEP N+G YV+LSNI
Sbjct: 473 LQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNI 532

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK- 419
           YS     +   ++R+ M+E+ ++K P  S+VE +G+VH F VGD++H  + +IY+ LD+ 
Sbjct: 533 YSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDEL 592

Query: 420 -LENLVQEHDGTKRSDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
            LE     ++ T      + E+   +  +  HSEKLAIAF ++ T PG  I V KNLR+C
Sbjct: 593 GLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVC 652

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DCH  IKL+S+I  R+ IVRD  RFH F+ G CSC DYW
Sbjct: 653 SDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 692



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 132/265 (49%), Gaps = 2/265 (0%)

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
           P  L  G   H   +K     +  V   L+T+Y +CG +   +++FD++P    ++W A+
Sbjct: 131 PHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTAL 190

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I+ Y   G     + + R   + G+ PD+ T V VL++CA +   + G  V +  +  G 
Sbjct: 191 ITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGI 250

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             + F+  A +++Y +CG + KAR +FD M  K  V+W A++GGY  +GH   A+ LF  
Sbjct: 251 AQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLA 310

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M   G+RPD  A    LSAC+  G  D G +    M +       P   T ++D+  + G
Sbjct: 311 MQAEGVRPDCYAVAGALSACTRLGALDLGRQAIR-MVDWDEFLDNPVLGTALIDMYAKCG 369

Query: 300 QLNEALELIESMLVEPDGAVWGALL 324
              EA  + + M  + D  VW A++
Sbjct: 370 STAEAWVVFQQMR-KKDIIVWNAMI 393


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/546 (38%), Positives = 308/546 (56%), Gaps = 45/546 (8%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +N +I+GY  N L   A+  F +M     +E ++ T+  +L  C +   L +G   H 
Sbjct: 445 VSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHS 504

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQ------------------------ 107
             ++ G+     + N L++ Y K GSV+  R++ DQ                        
Sbjct: 505 YILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDT 564

Query: 108 ---------VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC 158
                    +  + +I W AMI GY QNG     +EL+R M  +G  P++ T   VLS+C
Sbjct: 565 KQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSAC 624

Query: 159 AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM-PRKTVVSW 217
           A L     G ++  +   +    +  ++NA+I +YAR G++  AR +FD +  RK  ++W
Sbjct: 625 ASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITW 684

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
           T++I     HG GE AV LF+EM++ G++PD   +V VLSAC+HAG  DKG  Y+  M+N
Sbjct: 685 TSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQN 744

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
           ++G+ P   HY CMVDL  RAG L EA E I+ M V PD  VWG+LL AC++ KN +LAE
Sbjct: 745 EHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAE 804

Query: 338 LAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRV 397
           LA GK++ ++P N+G Y  L+N+YS     +   R+  + +++ +KK+ G+S+  ++G+V
Sbjct: 805 LAAGKLLSIDPHNSGAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKV 864

Query: 398 HLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEV-------HSE 450
           H+F   D  H Q   IYR   K   + +E          NS  H  D E+       HSE
Sbjct: 865 HVFGADDVLHPQRDSIYR---KAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSE 921

Query: 451 KLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFC 510
           KLAIAFG+I+T   T + +MKNLR+C DCH  IK +SK VDR+ IVRDATRFHHF+ G+C
Sbjct: 922 KLAIAFGLISTPEKTTLRIMKNLRVCNDCHTAIKFISKFVDREIIVRDATRFHHFRDGYC 981

Query: 511 SCKDYW 516
           SCKDYW
Sbjct: 982 SCKDYW 987



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/265 (32%), Positives = 135/265 (50%), Gaps = 9/265 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD  I +    + + A+I GY  N    EA+ LF  M   G E NS T+  +L  C   
Sbjct: 570 IFD--IMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASL 627

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV-PEKGLITWNAM 119
            YL  G   HC  ++   +   SV N ++T+Y + GSV   R++FDQ+   K  ITW +M
Sbjct: 628 AYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSM 687

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I   AQ+GL    + L+ EM  +GV PD +T+VGVLS+CAH G    G    +Q+Q N  
Sbjct: 688 IVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQ-NEH 746

Query: 180 GSNPFLNN--ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQL 236
           G  P +++   +++++AR G L +A      MP     V W +++    +  + ++A   
Sbjct: 747 GIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELA 806

Query: 237 FDEMLKSGIRPDG--TAFVSVLSAC 259
             ++L       G  +A  +V SAC
Sbjct: 807 AGKLLSIDPHNSGAYSALANVYSAC 831



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 103/415 (24%), Positives = 175/415 (42%), Gaps = 70/415 (16%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +  +I G   +    +AV  F  M  +G   +  T+  +L  C       +G   H 
Sbjct: 312 AVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHP 371

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP---------------------- 109
             VK GL     V N ++ MY KCG  +  R +F+++                       
Sbjct: 372 FVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMEL 431

Query: 110 ---------EKGLITWNAMISGYAQNGLATHVLELYREMKSL-GVCPDAVTFVGVLSSCA 159
                    E+ +++WN +I+GY QNGL    L+ +  M S   + PDA T   VLS+CA
Sbjct: 432 AVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACA 491

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNL-------------------- 199
           +L    +G ++   I   G   +  + NALI+ YA+ G++                    
Sbjct: 492 NLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISF 551

Query: 200 -------------KKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
                        K+AR IFD M  + V++WTA+I GY  +G  + A++LF  M+  G  
Sbjct: 552 TALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPE 611

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYT-CMVDLLGRAGQLNEAL 305
           P+     +VLSAC+     D G +     K    LQ      +  ++ +  R+G +  A 
Sbjct: 612 PNSHTLAAVLSACASLAYLDYGKQIH--CKAIRSLQEQSVSVSNAIITVYARSGSVPLAR 669

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
            + + +    +   W +++ A   H   E A + F ++++  ++P +  Y  +LS
Sbjct: 670 RVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLS 724



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 106/198 (53%), Gaps = 4/198 (2%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+++Y K G +     +F ++P++  ++W  MI G  ++G     ++ + +M S G  
Sbjct: 285 NSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFA 344

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P   T   VLSSCA + A  VG +V   +   G  S   + N+++ MY +CG+ + ARA+
Sbjct: 345 PSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAV 404

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           F+ M  ++V SW  ++  Y   G  E+AV +F+ M++  I     ++ ++++  +  GL 
Sbjct: 405 FERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSI----VSWNTIIAGYNQNGLD 460

Query: 266 DKGLEYFYGMKNKYGLQP 283
              L++F  M +   ++P
Sbjct: 461 GMALKFFSRMLSASSMEP 478



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 2/164 (1%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           N F  N+L+++YA+ G L  A  +F  MP +  VSWT +I G    G    AV+ F +M+
Sbjct: 280 NAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMV 339

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301
             G  P      +VLS+C+       G +  +    K GL         ++ + G+ G  
Sbjct: 340 SEGFAPSQFTLTNVLSSCAAMEACGVGRK-VHPFVVKLGLSSCVPVANSVLYMYGKCGDA 398

Query: 302 NEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345
             A  + E M V    + W  ++        +ELA   F  +++
Sbjct: 399 ETARAVFERMQVRSVSS-WNVMVSLYTHQGRMELAVSMFENMVE 441


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/543 (38%), Positives = 314/543 (57%), Gaps = 39/543 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +NA+ISGY  +    EA+ +F KM  +   + +  T+   L  C +   L LG   H 
Sbjct: 243 VSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHA 302

Query: 72  ICVKFGLDLDFSVGNCLMTMY---------------------------------VKCGSV 98
             ++   D   +VGN L++MY                                 VK G +
Sbjct: 303 HIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDI 362

Query: 99  DYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC 158
           +  R++FD +  + ++ W AMI GY QNG     +EL+R M   G  P+  T   +LS  
Sbjct: 363 NPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVS 422

Query: 159 AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP-RKTVVSW 217
           + L +   G ++      +G  S+  ++NALI MYA+ G++  AR +F+ +  ++  ++W
Sbjct: 423 SSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITW 482

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
           T++I     HG GE A+ LF+ ML++GI+PD   +V VLSAC+H GL ++G  Y+  M+N
Sbjct: 483 TSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQN 542

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
            + + P P HY CM+DL GRAG L EA   IE+M +EPD   WG+LL +CK+HKNVELAE
Sbjct: 543 AHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAE 602

Query: 338 LAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRV 397
           +A  +++ +EP N+G Y  L+N+YS     +    +R  M+++ +KKD G+S+V++K +V
Sbjct: 603 VAAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKV 662

Query: 398 HLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQ--KNSEEHLNDTEV--HSEKLA 453
           H+F V D  H Q   IY M+ K+   +++      ++    + EE L +  +  HSEKLA
Sbjct: 663 HIFGVDDGLHPQRDAIYEMMAKIWKEIKKMGFVPDTESVLHDLEEELKEQILSHHSEKLA 722

Query: 454 IAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCK 513
           IAFG+I T   T + +MKNLR+C DCH  IK +SK+V R+ IVRDATRFHHFK+G CSC+
Sbjct: 723 IAFGLICTPENTTLRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKNGLCSCR 782

Query: 514 DYW 516
           DYW
Sbjct: 783 DYW 785



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/414 (24%), Positives = 169/414 (40%), Gaps = 68/414 (16%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V + A+I GY        A+ +F +M    V     T+  +L  C     L +G   H 
Sbjct: 110 SVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHS 169

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI----------- 120
             VK GL    SV N L+ MY K G     + +FD++  K   +WN MI           
Sbjct: 170 FVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDL 229

Query: 121 --------------------SGYAQNGLATHVLELYREM-KSLGVCPDAVTFVGVLSSCA 159
                               SGY Q+G     L+++ +M       PD  T    LS+CA
Sbjct: 230 AQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACA 289

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC----------------------- 196
           +L    +G ++   I    F +   + NALI+MY++                        
Sbjct: 290 NLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAF 349

Query: 197 ----------GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
                     G++  AR IFD +  + VV+WTA+I GY  +G  + A++LF  M+K G +
Sbjct: 350 TALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPK 409

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           P+     ++LS  S     D G +  +    + G          ++ +  ++G +N+A  
Sbjct: 410 PNNYTLATMLSVSSSLASLDHGRQ-IHASATRSGNASSVSVSNALITMYAKSGSINDARW 468

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
           +   +  + D   W +++ A   H   E A   F ++++  ++P +  Y  +LS
Sbjct: 469 VFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLS 522



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 143/333 (42%), Gaps = 67/333 (20%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N +++ Y K G ++   ++F+++PE   ++W AMI GY Q G   + + ++REM S  V 
Sbjct: 83  NIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVP 142

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P   T   VL+SCA +    +G +V   +  +G  S   + N+L+NMYA+ G+   A+ +
Sbjct: 143 PTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIV 202

Query: 206 FDGMPRKT-------------------------------VVSWTAIIGGYGIHGHGEVAV 234
           FD M  K+                               VVSW A+I GY  HG    A+
Sbjct: 203 FDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREAL 262

Query: 235 QLFDEML-KSGIRPDGTAFVSVLSACS-----------HAGLTDKGLEYFYGMKNK---- 278
            +F +ML  S  +PD     S LSAC+           HA +     + F  + N     
Sbjct: 263 DIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISM 322

Query: 279 YGLQPGPE-----------------HYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWG 321
           Y    G E                  +T ++D   + G +N A  + +S+ V  D   W 
Sbjct: 323 YSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVR-DVVAWT 381

Query: 322 ALL-GACKIHKNVELAELAFGKVIKLEPMNTGY 353
           A++ G  +   N +  EL F  +IK  P    Y
Sbjct: 382 AMIVGYVQNGFNQDAMEL-FRSMIKEGPKPNNY 413



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 4/110 (3%)

Query: 166 VGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYG 225
            G  +  +I   G     FL N L+N YA+ G +  A  +FD MP K+V SW  I+ GY 
Sbjct: 31  TGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYA 90

Query: 226 IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
             G  E A ++F+EM +    PD  ++ +++   +  G  +  +  F  M
Sbjct: 91  KGGRLEEAHRVFEEMPE----PDSVSWTAMIVGYNQMGQFENAIGMFREM 136


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/516 (39%), Positives = 300/516 (58%), Gaps = 23/516 (4%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+ISG + N    +AV+LF +MR +GV+ N  T   +L +     Y       H  
Sbjct: 363 VSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTV----HYPVFVSEMHAE 418

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K   +   SVG  L+  YVK G+     K+F+ +  K L+ W+AM++GYAQ G     
Sbjct: 419 VIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEA 478

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL--- 189
            +L+ ++   G+ P+  TF  V+++CA   A +     EQ  Q + +     LNNAL   
Sbjct: 479 AKLFHQLIKEGIKPNEFTFSSVINACASPTAAA-----EQGKQFHAYAIKMRLNNALCVS 533

Query: 190 ---INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
              + MYA+ GN+  A  +F     + +VSW ++I GY  HG  + A+++FDEM K  + 
Sbjct: 534 SALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMD 593

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
            D   F+ V++AC+HAGL +KG +YF  M N + + P  +HY+CM+DL  RAG L +A+ 
Sbjct: 594 VDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMG 653

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366
           +I  M   P   VW  LLGA ++H+NVEL ELA  K+I L+P ++  YVLLSN+Y+ A N
Sbjct: 654 IINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAYVLLSNMYAAAGN 713

Query: 367 LDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE 426
                 VR +M +R++KK+PGYS++E+K + + F+ GD  H  + +IY  L +L   ++ 
Sbjct: 714 WQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSNQIYSKLSELS--IRL 771

Query: 427 HDGTKRSDQKNSEEHLNDTEV------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCH 480
            D   + D KN    + D +       HSE+LAIAFG+I T P   I ++KNLR+CGDCH
Sbjct: 772 KDAGYQPDTKNVFHDIEDEQKETILSHHSERLAIAFGLIATPPEIPIQIVKNLRVCGDCH 831

Query: 481 LFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            F KLVS +  R  +VRD+ RFHHFK G CSC DYW
Sbjct: 832 NFTKLVSLVEQRYIVVRDSNRFHHFKDGLCSCGDYW 867



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/314 (30%), Positives = 169/314 (53%), Gaps = 3/314 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N L+  Y  +    EA++LF  +    ++ +  T+ C+  IC       LG   HC CV
Sbjct: 61  HNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNICAGSLDGKLGRQVHCQCV 120

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           KFGL    SVG  L+ MY+K  +V+ GR++FD++ E+ +++W ++++GY+ NGL  +V E
Sbjct: 121 KFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWE 180

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+ +M+  GV P+  T   V+++  + G   +GL+V   +  +GF     + N+LI++Y+
Sbjct: 181 LFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYS 240

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           R G L+ AR +FD M  +  V+W ++I GY  +G      ++F++M  +G++P    F S
Sbjct: 241 RLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFAS 300

Query: 255 VLSACSHAGLTDKGLEYFYGMKN-KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           V+ +C  A L +  L      K  K G        T ++  L +  ++++AL L   M  
Sbjct: 301 VIKSC--ASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEE 358

Query: 314 EPDGAVWGALLGAC 327
             +   W A++  C
Sbjct: 359 GKNVVSWTAMISGC 372



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 175/346 (50%), Gaps = 9/346 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  +     V + +L++GY  N L      LF +M+ +GV  N  T+  ++   V+ 
Sbjct: 150 VFDEMGERN--VVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNE 207

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G + +G+  H + VK G +    V N L+++Y + G +   R +FD++  +  +TWN+MI
Sbjct: 208 GVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMI 267

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GY +NG    V E++ +M+  GV P  +TF  V+ SCA L   ++   ++ +   +GF 
Sbjct: 268 AGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFT 327

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPR-KTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
           ++  +  AL+   ++C  +  A ++F  M   K VVSWTA+I G   +G  + AV LF +
Sbjct: 328 TDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQ 387

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M + G++P+   + ++L+      +++   E       K   +      T ++D   + G
Sbjct: 388 MRREGVKPNHFTYSAILTVHYPVFVSEMHAEVI-----KTNYERSSSVGTALLDAYVKLG 442

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345
              +A+++ E ++   D   W A+L         E A   F ++IK
Sbjct: 443 NTIDAVKVFE-IIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIK 487


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/508 (38%), Positives = 287/508 (56%), Gaps = 4/508 (0%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
            V +  +I+GY   +   +A++ F +M ++G+  + V +   +  C     L  G   H  
Sbjct: 517  VSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQ 576

Query: 73   CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
                G   D    N L+T+Y +CG ++     F+Q      I WNA++SG+ Q+G     
Sbjct: 577  ACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEA 636

Query: 133  LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            L ++  M   G+  +  TF   + + +       G +V   I   G+ S   + NALI+M
Sbjct: 637  LRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISM 696

Query: 193  YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
            YA+CG++  A   F  +  K  VSW AII  Y  HG G  A+  FD+M+ S +RP+    
Sbjct: 697  YAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTL 756

Query: 253  VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            V VLSACSH GL DKG+ YF  M ++YGL P PEHY C+VD+L RAG L+ A E I+ M 
Sbjct: 757  VGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMP 816

Query: 313  VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            ++PD  VW  LL AC +HKN+E+ E A   +++LEP ++  YVLLSN+Y+ ++  D    
Sbjct: 817  IKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDL 876

Query: 373  VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----HD 428
             R  M+E+ +KK+PG S++E+K  +H F VGD+NH    EI+     L     E     D
Sbjct: 877  TRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQD 936

Query: 429  GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
                 ++   E+      +HSEKLAI+FG+++      I VMKNLR+C DCH +IK VSK
Sbjct: 937  CFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSK 996

Query: 489  IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            + +R+ IVRDA RFHHF+ G CSCKDYW
Sbjct: 997  VSNREIIVRDAYRFHHFEGGACSCKDYW 1024



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 144/329 (43%), Gaps = 2/329 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V YN LI+G        +A+ LF +M   G+E +S T+  L+  C   G L+ G   H 
Sbjct: 314 AVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHA 373

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              K G   +  +   L+ +Y KC  ++     F +   + ++ WN M+  Y       +
Sbjct: 374 YTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRN 433

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
              ++R+M+   + P+  T+  +L +C  LG   +G ++  QI    F  N ++ + LI+
Sbjct: 434 SFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLID 493

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+ G L  A  I      K VVSWT +I GY  +   + A+  F +ML  GIR D   
Sbjct: 494 MYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVG 553

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
             + +SAC+      +G +  +      G          +V L  R G++ E+    E  
Sbjct: 554 LTNAVSACAGLQALKEG-QQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQT 612

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAF 340
               D   W AL+   +   N E A   F
Sbjct: 613 EA-GDNIAWNALVSGFQQSGNNEEALRVF 640



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 155/328 (47%), Gaps = 7/328 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  + T  T  +N +I      +L+ E   LF +M  + V  N  T   +L  C   
Sbjct: 102 VFDEMPERTIFT--WNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC-RG 158

Query: 61  GYLWLGMC--CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
           G +   +    H   +  GL     V N L+ +Y + G VD  R++FD +  K   +W A
Sbjct: 159 GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVA 218

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           MISG ++N      + L+ +M  LG+ P    F  VLS+C  + +  +G ++   +   G
Sbjct: 219 MISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 278

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
           F S+ ++ NAL+++Y   GNL  A  IF  M ++  V++  +I G    G+GE A++LF 
Sbjct: 279 FSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK 338

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
            M   G+ PD     S++ ACS  G   +G +  +    K G     +    +++L  + 
Sbjct: 339 RMHLDGLEPDSNTLASLVVACSADGTLFRG-QQLHAYTTKLGFASNNKIEGALLNLYAKC 397

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGA 326
             +  AL+      VE +  +W  +L A
Sbjct: 398 ADIETALDYFLETEVE-NVVLWNVMLVA 424



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 148/321 (46%), Gaps = 8/321 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N ++  Y L   +  +  +F +M+ + +  N  T   +L  C+  G L LG   H  
Sbjct: 416 VLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQ 475

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K    L+  V + L+ MY K G +D    +  +   K +++W  MI+GY Q       
Sbjct: 476 IIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKA 535

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L  +R+M   G+  D V     +S+CA L A   G ++  Q   +GF S+    NAL+ +
Sbjct: 536 LTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTL 595

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y+RCG ++++   F+       ++W A++ G+   G+ E A+++F  M + GI  +   F
Sbjct: 596 YSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTF 655

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S + A S      +G +  + +  K G     E    ++ +  + G +++A    E   
Sbjct: 656 GSAVKAASETANMKQGKQ-VHAVITKTGYDSETEVCNALISMYAKCGSISDA----EKQF 710

Query: 313 VE---PDGAVWGALLGACKIH 330
           +E    +   W A++ A   H
Sbjct: 711 LEVSTKNEVSWNAIINAYSKH 731



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 103/323 (31%), Positives = 148/323 (45%), Gaps = 14/323 (4%)

Query: 11  LTVCYNALISGYVLNSLVSEAVSLFGK----MREQGVEINSVTMLCLLPICVDP-GYLWL 65
           LT+C     S   ++  +SE  S   K    +  +G+  N  T+  LL  C+   G L  
Sbjct: 4   LTLCGTRRASFAAISVYISEDESFQEKRIDSVENRGIRPNHQTLKWLLEGCLKTNGSLDE 63

Query: 66  GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
           G   H   +K GLD +  +   L   Y+  G +    K+FD++PE+ + TWN MI   A 
Sbjct: 64  GRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELAS 123

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA----NGFGS 181
             L   V  L+  M S  V P+  TF GVL +C      SV  +V +QI A     G   
Sbjct: 124 RNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACR---GGSVAFDVVEQIHARILYQGLRD 180

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           +  + N LI++Y+R G +  AR +FDG+  K   SW A+I G   +     A++LF +M 
Sbjct: 181 STVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMY 240

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301
             GI P   AF SVLSAC      + G E  +G+  K G          +V L    G L
Sbjct: 241 VLGIMPTPYAFSSVLSACKKIESLEIG-EQLHGLVLKLGFSSDTYVCNALVSLYFHLGNL 299

Query: 302 NEALELIESMLVEPDGAVWGALL 324
             A E I S + + D   +  L+
Sbjct: 300 ISA-EHIFSNMSQRDAVTYNTLI 321



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 137/292 (46%), Gaps = 1/292 (0%)

Query: 17  ALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKF 76
           A+ISG   N   +EA+ LF  M   G+         +L  C     L +G   H + +K 
Sbjct: 218 AMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKL 277

Query: 77  GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY 136
           G   D  V N L+++Y   G++     +F  + ++  +T+N +I+G +Q G     +EL+
Sbjct: 278 GFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELF 337

Query: 137 REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196
           + M   G+ PD+ T   ++ +C+  G    G ++       GF SN  +  AL+N+YA+C
Sbjct: 338 KRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKC 397

Query: 197 GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL 256
            +++ A   F     + VV W  ++  YG+      + ++F +M    I P+   + S+L
Sbjct: 398 ADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSIL 457

Query: 257 SACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
             C   G  + G E  +    K   Q      + ++D+  + G+L+ A +++
Sbjct: 458 KTCIRLGDLELG-EQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL 508



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 4/189 (2%)

Query: 139 MKSLGVCPDAVTFVGVLSSCAHL-GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG 197
           +++ G+ P+  T   +L  C    G+   G ++  QI   G  SN  L+  L + Y   G
Sbjct: 35  VENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKG 94

Query: 198 NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGH-GEVAVQLFDEMLKSGIRPDGTAFVSVL 256
           +L  A  +FD MP +T+ +W  +I         GEV   LF  M+   + P+   F  VL
Sbjct: 95  DLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEV-FGLFVRMVSENVTPNEGTFSGVL 153

Query: 257 SACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPD 316
            AC    +    +E  +      GL+        ++DL  R G ++ A  + + + ++ D
Sbjct: 154 EACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLK-D 212

Query: 317 GAVWGALLG 325
            + W A++ 
Sbjct: 213 HSSWVAMIS 221



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 2/117 (1%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           ST   V +NA+I+ Y  +   SEA+  F +M    V  N VT++ +L  C   G +  G+
Sbjct: 714 STKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGI 773

Query: 68  C-CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK-GLITWNAMISG 122
                +  ++GL        C++ M  + G +   ++   ++P K   + W  ++S 
Sbjct: 774 AYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSA 830


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/526 (40%), Positives = 307/526 (58%), Gaps = 17/526 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNS-LVSEAVSLFGKMREQGVEINSVTMLCLLPICVD 59
           +FD+ +   H    + A+I+GYV       EA+ LF  M    V  N  T    L  C +
Sbjct: 331 IFDQILD--HNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACAN 388

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              L +G       VK G      V N L++MY + G +D  RK FD + EK LI++N +
Sbjct: 389 LAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTV 448

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I  YA+N  +   LEL+ E++  G+   A TF  +LS  A +G    G ++  ++  +G 
Sbjct: 449 IDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGL 508

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             N  + NALI+MY+RCGN++ A  +F+ M  + V+SWT+II G+  HG    A++LF +
Sbjct: 509 KLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHK 568

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           ML+ G+RP+   +++VLSACSH GL ++G ++F  M  ++G+ P  EHY CMVD+LGR+G
Sbjct: 569 MLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSG 628

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
            L+EA++ I SM  + D  VW   LGAC++H N+EL + A   +I+ EP +   Y+LLSN
Sbjct: 629 SLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSN 688

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
           +Y+     D +  +R  M+E+ L K+ G S+VE++ +VH F VGD +H +  EIY   D+
Sbjct: 689 LYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIY---DE 745

Query: 420 LENL---------VQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVM 470
           L+NL         V   D      ++  +E L     HSEK+A+AFG+I+TS    I V 
Sbjct: 746 LQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKL--LFQHSEKIAVAFGLISTSKMKPIRVF 803

Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KNLRICGDCH  IK +S    R+ IVRDA RFHH K G CSC +YW
Sbjct: 804 KNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 168/346 (48%), Gaps = 16/346 (4%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           S+   + ++A++S +  N++   A+  F  M E G   N          C    ++ +G 
Sbjct: 129 SSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGD 188

Query: 68  CCHCICVKFG-LDLDFSVGNCLMTMYVKC-GSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
                 VK G L  D  VG  L+ M+VK  G +    K+F+++PE+  +TW  MI+   Q
Sbjct: 189 SIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQ 248

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
            G A   ++L+ EM   G  PD  T  GV+S+CA++    +G ++  Q   +G   +  +
Sbjct: 249 FGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCV 308

Query: 186 NNALINMYARC---GNLKKARAIFDGMPRKTVVSWTAIIGGYGIH-GHGEVAVQLFDEML 241
              LINMYA+C   G++  AR IFD +    V SWTA+I GY    G+ E A+ LF  M+
Sbjct: 309 GCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMI 368

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC----MVDLLGR 297
            + + P+   F S L AC++      G + F      + ++ G     C    ++ +  R
Sbjct: 369 LTHVIPNHFTFSSTLKACANLAALRIGEQVF-----THAVKLGFSSVNCVANSLISMYAR 423

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
           +G++++A +  + +L E +   +  ++ A   + N E A   F ++
Sbjct: 424 SGRIDDARKAFD-ILFEKNLISYNTVIDAYAKNLNSEEALELFNEI 468



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 112/243 (46%), Gaps = 3/243 (1%)

Query: 25  NSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSV 84
           N  + +A+S    M  QG   +  T    L  C+      +G   H    +  L LD   
Sbjct: 44  NGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVT 103

Query: 85  GNCLMTMYVKCGSVDYGRKLFDQV-PEKGLITWNAMISGYAQNGLATHVLELYREMKSLG 143
            N L+++Y KCG  +    +F  +   + LI+W+AM+S +A N +    L  + +M   G
Sbjct: 104 LNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENG 163

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF-GSNPFLNNALINMYARC-GNLKK 201
             P+   F     +C+     SVG  +   +   G+  S+  +   LI+M+ +  G+L  
Sbjct: 164 YYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVS 223

Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261
           A  +F+ MP +  V+WT +I      G+   A+ LF EM+ SG  PD      V+SAC++
Sbjct: 224 AFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACAN 283

Query: 262 AGL 264
             L
Sbjct: 284 MEL 286



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 102/247 (41%), Gaps = 41/247 (16%)

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
           NG     +     M   G  PD  T+   L  C    +  +G  V +++  +    +   
Sbjct: 44  NGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVT 103

Query: 186 NNALINMYARCGNLKKARAIFDGM-PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
            N+LI++Y++CG  +KA +IF  M   + ++SW+A++  +  +  G  A+  F +M+++G
Sbjct: 104 LNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENG 163

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG------------------------ 280
             P+   F +   ACS A     G +  +G   K G                        
Sbjct: 164 YYPNEYCFAAATRACSTAEFVSVG-DSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLV 222

Query: 281 -----LQPGPEH----YTCMVDLLGRAGQLNEALELIESMLV---EPDGAVWGALLGACK 328
                 +  PE     +T M+  L + G   EA++L   M++   EPD      ++ AC 
Sbjct: 223 SAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISAC- 281

Query: 329 IHKNVEL 335
              N+EL
Sbjct: 282 --ANMEL 286


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/508 (40%), Positives = 306/508 (60%), Gaps = 17/508 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA++SGY  N  V EA  +F KM  +    N ++   LL   V  G +         
Sbjct: 58  VSWNAMLSGYAQNGFVDEAREIFYKMPLK----NGISWNGLLAAYVQNGRIEDAK----R 109

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             +  +D      NCLM  +V+       R LFD +P++  I+W+AMI+GY+QNG +   
Sbjct: 110 LFESKMDWTLVSWNCLMGGFVR-----KRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEA 164

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L  + EM+      +  +F   LS+C+++ A  +G ++  ++   G+ +  ++ NAL+ M
Sbjct: 165 LHFFVEMQRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAM 224

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CG++ +AR  F  +  K VVSW  +I GY  HG GE A+ +F+ M  +GIRPD    
Sbjct: 225 YCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATM 284

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           VSVL+ACSHAGL D+G EYFY M   YG+     HYTCMVDLLGRAGQL EA  L+++M 
Sbjct: 285 VSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMP 344

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            EPD A WGALLGA +IH N EL E A   + ++EP N+G Y+LLS +Y+ +       +
Sbjct: 345 FEPDAATWGALLGASRIHGNTELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGK 404

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           +R+ MR + +KK PGYS++E++ ++H F VGD +H  T +IY  L++++  +++      
Sbjct: 405 MRLEMRNKGVKKVPGYSWLEVQNKIHTFKVGDTSHPHTDKIYTFLEEMDLKLKQEGYISS 464

Query: 433 SD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
           ++        EE ++  + HSEKLA+A+GI+    G  I V+KNLR+C DCH  IK +SK
Sbjct: 465 TNLVFHDVEEEEKVHMLKYHSEKLAVAYGILYIPAGRPIRVIKNLRVCEDCHNAIKYISK 524

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           IV R  I+RD  RFH+F+ G CSC+D+W
Sbjct: 525 IVGRLIILRDNHRFHYFEGGSCSCRDFW 552



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 123/234 (52%), Gaps = 5/234 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           ++ ++A+I+GY  N    EA+  F +M+     +N  +  C L  C +   L LG   HC
Sbjct: 145 SISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAALELGRQLHC 204

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             VK G    + VGN L+ MY KCGS+D  R  F ++ EK +++WN MI GYA++G    
Sbjct: 205 RLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEE 264

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN-GFGSNPFLNNALI 190
            L ++  MK+ G+ PD  T V VL++C+H G    G E    +  + G  +       ++
Sbjct: 265 ALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMV 324

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGH---GEVAVQLFDEM 240
           ++  R G L++A+ +   MP      +W A++G   IHG+   GE A Q+  EM
Sbjct: 325 DLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQIIFEM 378



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 123/244 (50%), Gaps = 15/244 (6%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140
           D    N ++T YV+   +   R LF+++PE+ +++WNAM+SGYAQNG      E++ +M 
Sbjct: 25  DLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYKMP 84

Query: 141 SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
                 + +++ G+L++    G     +E  +++  +         N L+      G ++
Sbjct: 85  ----LKNGISWNGLLAAYVQNGR----IEDAKRLFESKMDWTLVSWNCLMG-----GFVR 131

Query: 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
           K R +FD MP++  +SW+A+I GY  +G  E A+  F EM +   R + ++F   LS CS
Sbjct: 132 KRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCS 191

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320
           +    + G +  +    K G Q G      ++ +  + G ++EA +  + +L E D   W
Sbjct: 192 NIAALELGRQ-LHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEIL-EKDVVSW 249

Query: 321 GALL 324
             ++
Sbjct: 250 NTMI 253


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/534 (39%), Positives = 315/534 (58%), Gaps = 30/534 (5%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQG---VEINSVTMLCLLPICVDPGYL----WL 65
           V +N+LISG+ LN     A+  F  M  +G   VE N VT++ LL  C + G +    W+
Sbjct: 234 VSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWV 293

Query: 66  GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
                       +  D  V   L+ M+ +CG++   R++FD V  K ++ W+AMI+GY Q
Sbjct: 294 HEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQ 353

Query: 126 NGLATHVLELYREMKSLG------VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
                  L L+R+M   G      V P+AVT V V+++C+ LGA      + +   A G 
Sbjct: 354 GSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGL 413

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIHGHGEVAVQLF 237
             +  + +ALI+M A+CG+++  R +F  M    +TVVSW+++IG  GIHG G+ A++LF
Sbjct: 414 DQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELF 473

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
            EM   G  P+   ++SVLSACSHAGL ++G   F  M+  YG+ P  +HY C+VDLLGR
Sbjct: 474 SEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGR 533

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
           AG L+EA  +I +M ++ D A+WG+LL AC +H N +L E+   K++ L+  + G++VLL
Sbjct: 534 AGHLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLL 593

Query: 358 SNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML 417
           +N+Y +A   D ++R+R+ +R   L+K PG S++E+   V+ FM  DR+H ++  IY+ L
Sbjct: 594 ANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKEL 653

Query: 418 DKLENLVQEHDGTKRSDQKNSEEH-----LNDTEVHSEKLAIAFGII----------NTS 462
           D L+  V++          N E+      +   + HSE+LAIAFG+I          +  
Sbjct: 654 DGLDERVRKAAKYVTETGLNVEDGDIAGLIXRCKYHSERLAIAFGLIMIDRHSTCSCSLR 713

Query: 463 PGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
             T I + KNLR+C DCH + KLVSK++DR+ IVRDA RFHHF+ GFCSC DYW
Sbjct: 714 TATPIRITKNLRVCRDCHAYTKLVSKVIDRELIVRDAHRFHHFRDGFCSCGDYW 767



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 119/390 (30%), Positives = 188/390 (48%), Gaps = 37/390 (9%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMR----EQGVE---INSVTMLCL 53
           VFDE  + +   V + ALIS Y  N  V EA   FG+MR      G E   ++ V++  L
Sbjct: 109 VFDEMPEGSVDVVSWTALISAYSSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGAL 168

Query: 54  LPICV---DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP- 109
           +  C        L  G   H + VK+G  +   +GN ++ MY  C  V    ++F+ +P 
Sbjct: 169 VSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPI 228

Query: 110 -EKGLITWNAMISGYAQNGLATHVLELYREMKSLG---VCPDAVTFVGVLSSCAHLGAHS 165
            ++ +++WN++ISG+  NG A   L  + +M S G   V P+ VT + +L SCA LG   
Sbjct: 229 EQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVE 288

Query: 166 VGLEVEQQIQANG----FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
               V + I +         +  +  AL++M+ARCGNL  AR IFDG+  K VV W+A+I
Sbjct: 289 TSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMI 348

Query: 222 GGYGIHGHGEVAVQLFDEMLKSG------IRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
            GY      E A++LF +ML  G      ++P+    VSV++ACS  G +         M
Sbjct: 349 AGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSA-----SM 403

Query: 276 KNKYGLQPGPEH----YTCMVDLLGRAGQLNEALELIESMLVEPDGAV-WGALLGACKIH 330
            +KY +  G +      + ++D+  + G +    ++   M       V W +++GA  IH
Sbjct: 404 IHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIH 463

Query: 331 KNVELAELAFGKVIK--LEPMNTGYYVLLS 358
              + A   F ++     EP    Y  +LS
Sbjct: 464 GEGKRALELFSEMRTGGYEPNEITYISVLS 493



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 159/338 (47%), Gaps = 30/338 (8%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T  +N+LI+     +    A++ F +M+   V  N+ T   LL  C     L   +  H 
Sbjct: 18  TFHWNSLIAKNATQN-PQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQVHA 76

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG--LITWNAMISGYAQNGLA 129
              + GL  D      L+  Y KCG   Y  ++FD++PE    +++W A+IS Y+ NG  
Sbjct: 77  YLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCV 136

Query: 130 THVLELYREMKSL---------GVCPDAVTFVGVLSSCAHLGAHS----VGLEVEQQIQA 176
                 +  M+ +         GV  D V+   ++S+CA +G  S     G  V   +  
Sbjct: 137 DEAFXAFGRMRWMRGWDGSECCGV--DVVSLGALVSACA-VGCGSNCLRRGSAVHGLVVK 193

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMP--RKTVVSWTAIIGGYGIHGHGEVAV 234
            GFG +  L N++++MY+ C ++  A  +F+G+P  ++ VVSW ++I G+ ++G  E A+
Sbjct: 194 YGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERAL 253

Query: 235 QLFDEMLKSG---IRPDGTAFVSVLSACSHAGLTDKGL---EYFYGMKNKYGLQPGPEHY 288
           + F++M+  G   + P+    +++L +C+  G  +      EY     +   +       
Sbjct: 254 RTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVL 313

Query: 289 TCMVDLLGRAGQLNEALELIESMLVEPDGAV-WGALLG 325
           T ++D+  R G L  A E+ +   VE    V W A++ 
Sbjct: 314 TALLDMHARCGNLALAREIFDG--VEGKNVVCWSAMIA 349



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 2/124 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF E  +ST   V ++++I    ++     A+ LF +MR  G E N +T + +L  C   
Sbjct: 439 VFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHA 498

Query: 61  GYLWLGMCC-HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG-LITWNA 118
           G +  G  C + +   +G+        CL+ +  + G +D    +   +P K  L  W +
Sbjct: 499 GLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGS 558

Query: 119 MISG 122
           +++ 
Sbjct: 559 LLAA 562


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/542 (38%), Positives = 307/542 (56%), Gaps = 52/542 (9%)

Query: 27  LVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVG 85
           L SEA+ LF  M   G V+ N  T   +L  C     L  G   H + VKFG   D  V 
Sbjct: 101 LQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVI 160

Query: 86  NCLMTMYVKC-----------------------------------------------GSV 98
           + L+ MYV C                                               G +
Sbjct: 161 SNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDI 220

Query: 99  DYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC 158
              + LFD++P + +++WN MISGYAQNG     + L++EM+S  + P+ VT V VL + 
Sbjct: 221 KSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAI 280

Query: 159 AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWT 218
           A +GA  +G  +      N    +  L +AL++MY++CG++ KA  +F+ +P++  ++W+
Sbjct: 281 ARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWS 340

Query: 219 AIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278
           AIIG + +HG  E A+  F  M K+G+ P+  A++ +LSACSHAGL ++G  +F  M   
Sbjct: 341 AIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKV 400

Query: 279 YGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAEL 338
            GLQP  EHY CMVDLLGRAG L EA ELI +M +EPD  +W ALLGACK+HKN+++ E 
Sbjct: 401 VGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGER 460

Query: 339 AFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVH 398
               +++L P ++G YV LSN+Y+   N + + RVR+ M+   ++KDPG S++E+ G +H
Sbjct: 461 VAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIH 520

Query: 399 LFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQ----KNSEEHLNDTEVHSEKLAI 454
            F+V D +H +  EI  ML ++   ++ +     + +     + +E     + HSEK+A+
Sbjct: 521 EFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQERARALQYHSEKIAV 580

Query: 455 AFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKD 514
           AFG+I+T+P   + ++KNLRIC DCH  +KL+S I  RQ IVRD  RFH F+ G CSC D
Sbjct: 581 AFGLISTAPQHPLKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKRFHQFEHGSCSCMD 640

Query: 515 YW 516
           YW
Sbjct: 641 YW 642



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 132/252 (52%), Gaps = 4/252 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE    +   V +N +ISGY  N    EA++LF +M+   ++ N VT++ +LP     
Sbjct: 226 LFDEMPPRS--VVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARI 283

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L LG   H    K  +++D  +G+ L+ MY KCGS+D   ++F+ +P++  ITW+A+I
Sbjct: 284 GALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAII 343

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLE-VEQQIQANGF 179
             +A +G A   +  +  M   GV P+ V ++G+LS+C+H G    G       ++  G 
Sbjct: 344 GAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGL 403

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
                    ++++  R G+L++A  +   MP     V W A++G   +H + ++  ++ +
Sbjct: 404 QPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAE 463

Query: 239 EMLKSGIRPDGT 250
            +++      G+
Sbjct: 464 TLMELAPHDSGS 475



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 146/346 (42%), Gaps = 62/346 (17%)

Query: 70  HCICVKFGLDLD-FSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG- 127
           H I +K G   D  +    +         +DY R +F Q+PE     WN ++   A+   
Sbjct: 39  HAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRILAETND 98

Query: 128 --LATHVLELYREMKSLG-VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF 184
             L +  L L+  M   G V P+  TF  VL +CA       G ++   I   GF  + F
Sbjct: 99  EHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEF 158

Query: 185 LNNALINMYARC-----------------------------------------------G 197
           + + L+ MY  C                                               G
Sbjct: 159 VISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLG 218

Query: 198 NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257
           ++K A+ +FD MP ++VVSW  +I GY  +GH   A+ LF EM  S I P+    VSVL 
Sbjct: 219 DIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLP 278

Query: 258 ACSHAGLTDKG-LEYFYGMKNKYGLQP--GPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           A +  G  + G   + Y  KNK  +    G    + +VD+  + G +++AL++ E+ L +
Sbjct: 279 AIARIGALELGKWIHLYAGKNKVEIDDVLG----SALVDMYSKCGSIDKALQVFET-LPK 333

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
            +   W A++GA  +H   E A + F  + K  + P +  Y  +LS
Sbjct: 334 RNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILS 379


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/547 (36%), Positives = 314/547 (57%), Gaps = 50/547 (9%)

Query: 12   TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            +  + A+I+G+V N    EA+ L  ++   G   +  +    L  C + G + +G   H 
Sbjct: 520  SASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHS 579

Query: 72   ICVKFGLDLDFSVGNCLMTMYVKCGSVDYG------------------------------ 101
            + +K G   +  V N L++MY KCG+V+ G                              
Sbjct: 580  LAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDD 639

Query: 102  -RKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160
             R +F+++P++ +++W A+IS Y Q G     L+L+ +M + G+ P+ +T   +LS+C +
Sbjct: 640  ARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGN 699

Query: 161  LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
            LGA  +G +    I   GF +  F+ N+LI MY +CG  +    +F+ MP   +++W A+
Sbjct: 700  LGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPEHDLITWNAV 758

Query: 221  IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
            + G   +G G+ A+++F++M   GI PD  +F+ VL ACSHAGL D+G  +F  M  KYG
Sbjct: 759  LVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYG 818

Query: 281  LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
            + P   HYTCMVDLLGRAG L+EA  LIE+M V+PD  +W ALLGAC+IH+NVEL +   
Sbjct: 819  IMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVA 878

Query: 341  GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400
             ++ ++    +  YVLLSN+++     D +  +R +M+++ L K+PG S++++K ++H F
Sbjct: 879  ERLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNKLHCF 938

Query: 401  MVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD-----------QKNSEEHLNDTEVHS 449
            + GDR H Q  EIY  L       +E+ G  R+                E+  N+   HS
Sbjct: 939  VTGDRTHDQIEEIYSAL-------KEYYGCFRATGYMPDTNFVLHDVEEEQKQNELLYHS 991

Query: 450  EKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGF 509
            EKLA+ FGI++T  G+ I ++KNLRICGDCH F+K +SK+  R+ I+RD  RFHHF+ G 
Sbjct: 992  EKLAVVFGILSTPNGSPIQIIKNLRICGDCHTFMKFMSKVTLRKIIIRDGNRFHHFRDGS 1051

Query: 510  CSCKDYW 516
            CSC DYW
Sbjct: 1052 CSCGDYW 1058



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 152/345 (44%), Gaps = 44/345 (12%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC-IC 73
           +  +I+ +     + +A+ L+ ++ EQ V   +  M           Y  +G      + 
Sbjct: 430 WTTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMM---------TAYAQVGRIQKARLI 480

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
               L+ +    N ++  Y + G +   + LF ++P K   +W AMI+G+ QN  +   L
Sbjct: 481 FDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREAL 540

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
           EL  E+   G  P   +F   LS+CA++G   +G  +       G   N ++ N LI+MY
Sbjct: 541 ELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMY 600

Query: 194 ARCGN-------------------------------LKKARAIFDGMPRKTVVSWTAIIG 222
           A+CGN                               L  AR +F+ MP++ VVSWTAII 
Sbjct: 601 AKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIIS 660

Query: 223 GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQ 282
            Y   GHGEVA+ LF +ML  GI+P+     S+LSAC + G    G E F+ +  K G  
Sbjct: 661 AYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLG-EQFHALIFKLGFD 719

Query: 283 PGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
                   ++ +  + G   +   + E M  E D   W A+L  C
Sbjct: 720 TFLFVGNSLITMYFKCG-YEDGFCVFEEM-PEHDLITWNAVLVGC 762



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 151/334 (45%), Gaps = 10/334 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V +  +ISGYV  S   EA  +F KM       +    + +L        L L      
Sbjct: 326 SVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRP 385

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           I +K G + D  VG+ ++  Y + GS+D     F+ +PE+   +W  MI+ +AQ G    
Sbjct: 386 IAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDD 445

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            ++LY  +    V     T   ++++ A +G       +  +I       N    NA+I 
Sbjct: 446 AIQLYERVPEQTVA----TKTAMMTAYAQVGRIQKARLIFDEI----LNPNVVAWNAIIA 497

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
            Y + G LK+A+ +F  MP K   SW A+I G+  +     A++L  E+ +SG  P  ++
Sbjct: 498 GYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSS 557

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F S LSAC++ G  + G    + +  K G Q        ++ +  + G + +   +  ++
Sbjct: 558 FTSALSACANIGDVEIG-RVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTI 616

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345
            V+ D   W +L+     +  ++ A + F K+ K
Sbjct: 617 RVK-DTVSWNSLISGLSENYMLDDARVVFEKMPK 649



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 152/357 (42%), Gaps = 53/357 (14%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF+E I+     V +N++I+GY  N  V EA  LF      G  I + T+L         
Sbjct: 193 VFNEMIQRD--VVSWNSMINGYSQNGKVDEARLLFDAF--VGKNIRTWTILL-------T 241

Query: 61  GYLWLGMCCHCICVKFGL-DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
           GY   G       V   + + +    N +++ YV+ G +   RKLFD++PEK + +WN++
Sbjct: 242 GYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSV 301

Query: 120 ISGYAQNGLATHVLELYREMKS--------------------------LGVC-----PDA 148
           ++GY      +   EL+ +M                            + +C     PD 
Sbjct: 302 VTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQ 361

Query: 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208
             FV VLS+   L    +   +       G+  +  + +A++N Y R G+L  A   F+ 
Sbjct: 362 SIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFET 421

Query: 209 MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
           MP +   SWT +I  +   G  + A+QL++ + +  +        ++++A +  G   K 
Sbjct: 422 MPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTV----ATKTAMMTAYAQVGRIQKA 477

Query: 269 LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
              F  +     L P    +  ++    + G L EA +L + M V+ + A W A++ 
Sbjct: 478 RLIFDEI-----LNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVK-NSASWAAMIA 528



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 11/156 (7%)

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
           F  N  I    R G +++AR +F+ M ++ VVSW ++I GY  +G  + A  LFD  +  
Sbjct: 172 FQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGK 231

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
            IR     +  +L+  +  G  ++  E F  M  +  +      +  M+    + G L  
Sbjct: 232 NIR----TWTILLTGYAKEGRIEEAREVFESMTERNVVS-----WNAMISGYVQNGDLKN 282

Query: 304 ALELIESMLVEPDGAVWGALL-GACKIHKNVELAEL 338
           A +L + M  E + A W +++ G C  ++  E  EL
Sbjct: 283 ARKLFDEM-PEKNVASWNSVVTGYCHCYRMSEAREL 317



 Score = 38.9 bits (89), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 79/188 (42%), Gaps = 11/188 (5%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF+E     H  + +NA++ G   N L  EA+ +F +M  +G+  + ++ L +L  C   
Sbjct: 743 VFEE--MPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHA 800

Query: 61  GYLWLGMC-CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK-GLITWNA 118
           G +  G    + +  K+G+        C++ +  + G +     L + +P K   + W A
Sbjct: 801 GLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEA 860

Query: 119 MISG---YAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175
           ++     +    L   V E   +M      P + T+V + +  A  G      E+ + ++
Sbjct: 861 LLGACRIHRNVELGQRVAERLFQMTK----PKSATYVLLSNLFASQGMWDKVAEIRKLMK 916

Query: 176 ANGFGSNP 183
             G    P
Sbjct: 917 DQGLTKEP 924


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/523 (40%), Positives = 303/523 (57%), Gaps = 19/523 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  K     V + A+ISGY  N  V+ A  LF  M E+  E++   ML         
Sbjct: 196 LFDEMPKRN--VVSWTAMISGYAQNGEVNLARKLFEVMPERN-EVSWTAMLV-------- 244

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNC--LMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
           GY+  G       + F    +  V  C  +M  + + G VD  + +F+++ E+   TW+A
Sbjct: 245 GYIQAGHVEDAAEL-FNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSA 303

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           MI  Y QN      L  +REM   GV P+  + + +L+ CA L     G EV   +    
Sbjct: 304 MIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCS 363

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
           F  + F  +ALI MY +CGNL KA+ +F     K +V W ++I GY  HG GE A+ +F 
Sbjct: 364 FDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFH 423

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
           +M  +G+ PDG  ++  L+ACS+ G   +G E F  M     ++PG EHY+CMVDLLGR+
Sbjct: 424 DMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRS 483

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           G + EA +LI++M VEPD  +WGAL+GAC++H+N E+AE+A  K+++LEP N G YVLLS
Sbjct: 484 GLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLELEPGNAGPYVLLS 543

Query: 359 NIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGD-RNHHQTVEIYRML 417
           +IY+     +   ++R  +  R L K PG S++E   RVHLF  GD   H +   I R+L
Sbjct: 544 HIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRIL 603

Query: 418 DKLENLVQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
           +KL+ L+ E     DG+      + E+  +    HSE+ A+A+G++    G  I VMKNL
Sbjct: 604 EKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNL 663

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           R+CGDCH  IKL++KI  R+ ++RDA RFHHFK GFCSC+DYW
Sbjct: 664 RVCGDCHSAIKLIAKITSREIVLRDANRFHHFKDGFCSCRDYW 706



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 128/273 (46%), Gaps = 20/273 (7%)

Query: 5   SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLW 64
           SI      V + +L+ GYV + L+++A+ LF +M E+    N V+   LL   +D G + 
Sbjct: 105 SIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPER----NHVSYTVLLGGLLDAGRVN 160

Query: 65  LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYA 124
                         D D      +++ Y + G +   R LFD++P++ +++W AMISGYA
Sbjct: 161 EAR----RLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYA 216

Query: 125 QNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA-NGFGSNP 183
           QNG      +L+  M       + V++  +L      G       VE   +  N    +P
Sbjct: 217 QNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQAG------HVEDAAELFNAMPEHP 266

Query: 184 FLN-NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
               NA++  + + G +  A+ +F+ M  +   +W+A+I  Y  +     A+  F EML 
Sbjct: 267 VAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLW 326

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
            G+RP+  + +S+L+ C+   + D G E    M
Sbjct: 327 RGVRPNYPSVISILTVCAALAVLDYGREVHAAM 359



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 120/301 (39%), Gaps = 74/301 (24%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK----- 140
           N  +    + G+++  R  F+ +P +   ++NA+++GY +N L    L L+R M      
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 141 ------------------------SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
                                   S+   P  V+F  +L      G  +  + + QQ+  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 177 NG-----------------------FGSNPFLN----NALINMYARCGNLKKARAIFDGM 209
                                    F   P  +     A+++ Y + G + +ARA+FD M
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
           P++ VVSWTA+I GY  +G   +A +LF+ M +     +  ++ ++L     AG  +   
Sbjct: 201 PKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQAGHVEDAA 256

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLL----GRAGQLNEALELIESMLVEPDGAVWGALLG 325
           E F  M         PEH     + +    G+ G ++ A  + E M    DG  W A++ 
Sbjct: 257 ELFNAM---------PEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDG-TWSAMIK 306

Query: 326 A 326
           A
Sbjct: 307 A 307



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 82/201 (40%), Gaps = 40/201 (19%)

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM------ 240
           NA I   AR GN++ ARA F+ MP +T  S+ A++ GY  +   + A+ LF  M      
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 241 ----------LKSGIRPDGTA-------------FVSVLSACSHAGLTDKGLEYFYGMKN 277
                     L+    PD  A             F S+L      GL    +  F  M  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL-GACKIHKNVE-- 334
           +  +      YT ++  L  AG++NEA  L + M  + D   W A+L G C+  +  E  
Sbjct: 141 RNHVS-----YTVLLGGLLDAGRVNEARRLFDEM-PDRDVVAWTAMLSGYCQAGRITEAR 194

Query: 335 --LAELAFGKVIKLEPMNTGY 353
               E+    V+    M +GY
Sbjct: 195 ALFDEMPKRNVVSWTAMISGY 215


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/514 (38%), Positives = 308/514 (59%), Gaps = 15/514 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +I     N+   EA+ L  +M+ +G   N  T+  +L  C     +   M  H  
Sbjct: 110 VSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECMQLHAF 169

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K  +D +  VG  L+ +Y KC S+    ++F+ +PEK  +TW++M++GY QNG     
Sbjct: 170 SIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEEA 229

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L ++R  + +G   D       +S+CA L     G +V      +GFGSN +++++LI+M
Sbjct: 230 LLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSLIDM 289

Query: 193 YARCGNLKKARAIFDG-MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           YA+CG +++A  +F G +  +++V W A+I G+  H     A+ LF++M + G  PD   
Sbjct: 290 YAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGFFPDDVT 349

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           +V VL+ACSH GL ++G +YF  M  ++ L P   HY+CM+D+LGRAG +++A +LIE M
Sbjct: 350 YVCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYDLIERM 409

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
                 ++WG+LL +CKI+ N+E AE+A   + ++EP N G ++LL+NIY+  +  D + 
Sbjct: 410 PFNATSSMWGSLLASCKIYGNIEFAEIAAKYLFEMEPNNAGNHILLANIYAANKKWDEVA 469

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
           R R ++RE  ++K+ G S++E+K ++H F VG+RNH Q  +IY    KL+NLV E    K
Sbjct: 470 RARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQIDDIY---AKLDNLVVE--LKK 524

Query: 432 RSDQKNSEEHLNDTEV---------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLF 482
            + + ++   L+D E          HSEKLAI FG++       I ++KNLRICGDCH F
Sbjct: 525 LNYKVDTSNDLHDVEENRKQMLLRHHSEKLAITFGLMCLPRDIPIRIIKNLRICGDCHTF 584

Query: 483 IKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +KLVSK   R+ IVRD  RFHHFK GFCSC ++W
Sbjct: 585 MKLVSKSTSREIIVRDTNRFHHFKDGFCSCGEFW 618



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 169/360 (46%), Gaps = 5/360 (1%)

Query: 26  SLVSEAVSLFGKMREQGVEINSVTML-CLLPICVDPGYLWLGMCCHCICVKFGLDLDFSV 84
           +++SEA     K+ E  V I+ V+ L  LL +C        G  CH   ++ GL++D   
Sbjct: 22  TVISEAKPESSKV-ENVVHIDRVSNLHYLLQLCAKTRSSMGGRACHAQIIRIGLEMDILT 80

Query: 85  GNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGV 144
            N L+ MY KC  VD  RK F+++P K L++WN +I    QN      L+L  +M+  G 
Sbjct: 81  SNMLINMYSKCSLVDSARKKFNEMPVKSLVSWNTVIGALTQNAEDREALKLLIQMQREGT 140

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARA 204
             +  T   VL +CA   A    +++          SN F+  AL+++YA+C ++K A  
Sbjct: 141 PFNEFTISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQ 200

Query: 205 IFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL 264
           +F+ MP K  V+W++++ GY  +G  E A+ +F      G   D     S +SAC+    
Sbjct: 201 MFESMPEKNAVTWSSMMAGYVQNGFHEEALLIFRNAQLMGFDQDPFMISSAVSACAGLAT 260

Query: 265 TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
             +G +  + + +K G        + ++D+  + G + EA  + + +L      +W A++
Sbjct: 261 LIEG-KQVHAISHKSGFGSNIYVSSSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMI 319

Query: 325 GACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRL 382
                H     A + F K+ +    P +  Y  +L+       + +G     +M+R+  L
Sbjct: 320 SGFARHARAPEAMILFEKMQQRGFFPDDVTYVCVLNACSHMGLHEEGQKYFDLMVRQHNL 379


>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/464 (44%), Positives = 286/464 (61%), Gaps = 28/464 (6%)

Query: 75  KFGLDLDFSVGNCLMTMYVKCG----SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
           +FGL  D    N L+ M ++C       +Y R LF Q+ +  +  WN MI G   N    
Sbjct: 39  RFGLCHD----NYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFD 94

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVE---------QQIQANGFGS 181
             +E Y  M+S G  P+  TF  VL +CA L    +G+++          + I   G   
Sbjct: 95  DAIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVR 154

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           N F+  +L++MYA+CGN++KAR++FDGMP K +VSW A+I GY ++G  + A+ LF +M 
Sbjct: 155 NVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQ 214

Query: 242 KS---GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
           +    GI+PDG  F+ +L  C+HAGL D+G  YF  M   + L P  EHY CMVDLLGRA
Sbjct: 215 RENKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRA 274

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           G L+EA +LI +M +E +  VWGALLGAC+IH++ +LAELA  ++I+LEP N+G YVLLS
Sbjct: 275 GLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLS 334

Query: 359 NIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD 418
           NIYS     D   +VR+ M E+R++K PG S++E+ G VH F+VGD+ H  + +IY  LD
Sbjct: 335 NIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLD 394

Query: 419 KLENLVQEHDGTKRSD------QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKN 472
           +L   ++       +D      ++  +EH      HSEKLAIAFG+I+ +P   I V+KN
Sbjct: 395 ELTKKMKVAGYVPTTDFVLFDIEEEEKEHF--LGCHSEKLAIAFGLISATPTAVIRVVKN 452

Query: 473 LRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           LR+CGDCH+ IKL+S I  R+  VRD  RFH F+ G CSC DYW
Sbjct: 453 LRVCGDCHMAIKLISSITGREITVRDNNRFHCFREGSCSCNDYW 496



 Score = 39.3 bits (90), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 5/113 (4%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQ---GVEINSVTMLCLLPICVDPGYLWLG-MC 68
           V + A+I GY LN L  EA+ LF +M+ +   G++ +  T + LL  C   G +  G   
Sbjct: 188 VSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNTFIGLLCGCTHAGLVDEGRRY 247

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP-EKGLITWNAMI 120
            + +   F L        C++ +  + G +D   +L   +P E   I W A++
Sbjct: 248 FNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALL 300


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/558 (37%), Positives = 314/558 (56%), Gaps = 55/558 (9%)

Query: 14  CYNALISGYVLNS---LVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMCC 69
           C+N ++      +   L SEA+ LF  M   G V+ N  T   +L  C     L  G   
Sbjct: 85  CWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQI 144

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKC---------------------------------- 95
           H + VKFG   D  V + L+ MYV C                                  
Sbjct: 145 HGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNV 204

Query: 96  -------------GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL 142
                        G +   + LFD++P++ +++WN MISGYAQNG     + L++EM+S 
Sbjct: 205 VLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSS 264

Query: 143 GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202
            + P+ VT V VL + A +GA  +G  +      N    +  L +AL++MY++CG++ +A
Sbjct: 265 NIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEA 324

Query: 203 RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262
             +F+ +P++  ++W+AIIG + +HG  E A+  F  M K+G+ P+  A++ +LSACSHA
Sbjct: 325 LQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHA 384

Query: 263 GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGA 322
           GL ++G  +F  M    GLQP  EHY CMVDLLGRAG L EA ELI +M +EPD  +W A
Sbjct: 385 GLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKA 444

Query: 323 LLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRL 382
           LLGACK+HKN+++ E     +++L P ++G YV LSN+Y+   N + + RVR+ M+   +
Sbjct: 445 LLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDI 504

Query: 383 KKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQ----KNS 438
           +KDPG S++E+ G +H F+V D +H +  EI  ML ++   ++ +     + +     + 
Sbjct: 505 RKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDE 564

Query: 439 EEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRD 498
           +E     + HSEK+A+AFG+I+T+P   + ++KNLRIC DCH  +KL+S I  RQ IVRD
Sbjct: 565 QERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKLISLIYKRQIIVRD 624

Query: 499 ATRFHHFKSGFCSCKDYW 516
             RFH F+ G CSC DYW
Sbjct: 625 RKRFHQFEHGSCSCMDYW 642



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 133/252 (52%), Gaps = 4/252 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  + +   V +N +ISGY  N    EA++LF +M+   ++ N VT++ +LP     
Sbjct: 226 LFDEMPQRS--VVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARI 283

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L LG   H    K  +++D  +G+ L+ MY KCGS+D   ++F+ +P++  ITW+A+I
Sbjct: 284 GALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAII 343

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLE-VEQQIQANGF 179
             +A +G A   +  +  M   GV P+ V ++G+LS+C+H G    G       ++  G 
Sbjct: 344 GAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGL 403

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
                    ++++  R G+L++A  +   MP     V W A++G   +H + ++  ++ +
Sbjct: 404 QPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAE 463

Query: 239 EMLKSGIRPDGT 250
            +++      G+
Sbjct: 464 TLMELAPHDSGS 475



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 147/344 (42%), Gaps = 58/344 (16%)

Query: 70  HCICVKFGLDLD-FSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG- 127
           H I +K G   D  +    +         +DY R +F Q+PE     WN ++   A+   
Sbjct: 39  HAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRVLAETND 98

Query: 128 --LATHVLELYREMKSLG-VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF 184
             L +  L L+  M   G V P+  TF  VL +CA       G ++   I   GF  + F
Sbjct: 99  EHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEF 158

Query: 185 LNNALINMYARC-----------------------------------------------G 197
           + + L+ MY  C                                               G
Sbjct: 159 VISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLG 218

Query: 198 NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257
           ++K A+ +FD MP+++VVSW  +I GY  +GH   A+ LF EM  S I P+    VSVL 
Sbjct: 219 DIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLP 278

Query: 258 ACSHAGLTDKG-LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPD 316
           A +  G  + G   + Y  KNK  ++      + +VD+  + G ++EAL++ E+ L + +
Sbjct: 279 AIARIGALELGKWIHLYAGKNK--IEIDDVLGSALVDMYSKCGSIDEALQVFET-LPKRN 335

Query: 317 GAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
              W A++GA  +H   E A + F  + K  + P +  Y  +LS
Sbjct: 336 AITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILS 379


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/523 (40%), Positives = 302/523 (57%), Gaps = 19/523 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  K     V + A+ISGY  N  V+ A  LF  M E+  E++   ML         
Sbjct: 196 LFDEMPKRN--VVSWTAMISGYAQNGEVNLARKLFEVMPERN-EVSWTAMLV-------- 244

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNC--LMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
           GY+  G       + F    +  V  C  +M  + + G VD  + +F+++ E+   TW+A
Sbjct: 245 GYIQAGHVEDAAEL-FNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSA 303

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           MI  Y QN      L  +REM   GV P+  + + +L+ CA L     G EV   +    
Sbjct: 304 MIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCS 363

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
           F  + F  +ALI MY +CGNL KA+ +F     K +V W ++I GY  HG GE A+ +F 
Sbjct: 364 FDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFH 423

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
           +M  +G+ PDG  ++  L+ACS+ G   +G E F  M     ++PG EHY+CMVDLLGR+
Sbjct: 424 DMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRS 483

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           G + EA +LI++M VEPD  +WGAL+GAC++H+N E+AE A  K+++LEP N G YVLLS
Sbjct: 484 GLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLS 543

Query: 359 NIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGD-RNHHQTVEIYRML 417
           +IY+     +   ++R  +  R L K PG S++E   RVHLF  GD   H +   I R+L
Sbjct: 544 HIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRIL 603

Query: 418 DKLENLVQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
           +KL+ L+ E     DG+      + E+  +    HSE+ A+A+G++    G  I VMKNL
Sbjct: 604 EKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNL 663

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           R+CGDCH  IKL++KI  R+ I+RDA RFHHFK GFCSC+DYW
Sbjct: 664 RVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 128/273 (46%), Gaps = 20/273 (7%)

Query: 5   SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLW 64
           SI      V + +L+ GYV + L+++A+ LF +M E+    N V+   LL   +D G + 
Sbjct: 105 SIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPER----NHVSYTVLLGGLLDAGRVN 160

Query: 65  LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYA 124
                         D D      +++ Y + G +   R LFD++P++ +++W AMISGYA
Sbjct: 161 EAR----RLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYA 216

Query: 125 QNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA-NGFGSNP 183
           QNG      +L+  M       + V++  +L      G       VE   +  N    +P
Sbjct: 217 QNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQAG------HVEDAAELFNAMPEHP 266

Query: 184 FLN-NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
               NA++  + + G +  A+ +F+ M  +   +W+A+I  Y  +     A+  F EML 
Sbjct: 267 VAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLW 326

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
            G+RP+  + +S+L+ C+   + D G E    M
Sbjct: 327 RGVRPNYPSVISILTVCAALAVLDYGREVHAAM 359



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 120/301 (39%), Gaps = 74/301 (24%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK----- 140
           N  +    + G+++  R  F+ +P +   ++NA+++GY +N L    L L+R M      
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 141 ------------------------SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
                                   S+   P  V+F  +L      G  +  + + QQ+  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 177 NG-----------------------FGSNPFLN----NALINMYARCGNLKKARAIFDGM 209
                                    F   P  +     A+++ Y + G + +ARA+FD M
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
           P++ VVSWTA+I GY  +G   +A +LF+ M +     +  ++ ++L     AG  +   
Sbjct: 201 PKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQAGHVEDAA 256

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLL----GRAGQLNEALELIESMLVEPDGAVWGALLG 325
           E F  M         PEH     + +    G+ G ++ A  + E M  E D   W A++ 
Sbjct: 257 ELFNAM---------PEHPVAACNAMMVGFGQRGMVDAAKTVFEKM-CERDDGTWSAMIK 306

Query: 326 A 326
           A
Sbjct: 307 A 307



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 82/201 (40%), Gaps = 40/201 (19%)

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM------ 240
           NA I   AR GN++ ARA F+ MP +T  S+ A++ GY  +   + A+ LF  M      
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 241 ----------LKSGIRPDGTA-------------FVSVLSACSHAGLTDKGLEYFYGMKN 277
                     L+    PD  A             F S+L      GL    +  F  M  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL-GACKIHKNVE-- 334
           +  +      YT ++  L  AG++NEA  L + M  + D   W A+L G C+  +  E  
Sbjct: 141 RNHVS-----YTVLLGGLLDAGRVNEARRLFDEM-PDRDVVAWTAMLSGYCQAGRITEAR 194

Query: 335 --LAELAFGKVIKLEPMNTGY 353
               E+    V+    M +GY
Sbjct: 195 ALFDEMPKRNVVSWTAMISGY 215


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/515 (38%), Positives = 310/515 (60%), Gaps = 11/515 (2%)

Query: 10  HLTVCYNALISGYVLNSLVS-EAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           H  + + A+I+ Y  +     EA+ LF KM    +  N  +   +L  C +    + G  
Sbjct: 123 HNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQ 182

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            +   VK G+     VGN L++MY + G ++  RK FD + EK L+++NA++ GYA+N  
Sbjct: 183 VYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLK 242

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
           +     L+ E+   G+   A TF  +LS  A +GA   G ++  ++   G+ SN  + NA
Sbjct: 243 SEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNA 302

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           LI+MY+RCGN++ A  +F+ M  + V+SWT++I G+  HG    A+++F +ML++G +P+
Sbjct: 303 LISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPN 362

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
              +V+VLSACSH G+  +G ++F  M  ++G+ P  EHY CMVDLLGR+G L EA+E I
Sbjct: 363 EITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFI 422

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
            SM +  D  VW  LLGAC++H N EL   A   +++ EP +   Y+LLSN+++ A    
Sbjct: 423 NSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWK 482

Query: 369 GIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHD 428
            ++++R  M+ER L K+ G S++E++ RVH F VG+ +H Q  +IY+ LD+L + ++E  
Sbjct: 483 DVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMG 542

Query: 429 GTKRSD-------QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHL 481
               +D       ++  E+ L     HSEK+A+AFG+I+TS    I + KNLR+CGDCH 
Sbjct: 543 YIPDTDFVLHDIEEEQKEQFLFQ---HSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHT 599

Query: 482 FIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            IK +S    R+ +VRD+ RFHH K+G CSC DYW
Sbjct: 600 AIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 634



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/352 (30%), Positives = 170/352 (48%), Gaps = 8/352 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  +I+ +       +A+ LF  M   G   +  T   +L  C + G L LG   H  
Sbjct: 22  VTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSR 81

Query: 73  CVKFGLDLDFSVGNCLMTMYVKC---GSVDYGRKLFDQVPEKGLITWNAMISGYAQNG-L 128
            ++ GL LD  VG  L+ MY KC   GSVD  RK+F+Q+PE  +++W A+I+ YAQ+G  
Sbjct: 82  VIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGEC 141

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
               +EL+ +M S  + P+  +F  VL +C +L     G +V       G  S   + N+
Sbjct: 142 DKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNS 201

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           LI+MYAR G ++ AR  FD +  K +VS+ AI+ GY  +   E A  LF+E+  +GI   
Sbjct: 202 LISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGIS 261

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
              F S+LS  +  G   KG E  +G   K G +        ++ +  R G +  A ++ 
Sbjct: 262 AFTFASLLSGAASIGAMGKG-EQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVF 320

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
             M  + +   W +++     H     A   F K+++   +P    Y  +LS
Sbjct: 321 NEM-EDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLS 371



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 133/245 (54%), Gaps = 6/245 (2%)

Query: 103 KLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162
           K+FD++PE+ L+TW  MI+ +AQ G A   ++L+ +M+  G  PD  T+  VLS+C  LG
Sbjct: 11  KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELG 70

Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARC---GNLKKARAIFDGMPRKTVVSWTA 219
             ++G ++  ++   G   +  +  +L++MYA+C   G++  +R +F+ MP   V+SWTA
Sbjct: 71  LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTA 130

Query: 220 IIGGYGIHGH-GEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278
           II  Y   G   + A++LF +M+   IRP+  +F SVL AC +      G E  Y    K
Sbjct: 131 IITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTG-EQVYSYAVK 189

Query: 279 YGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAEL 338
            G+         ++ +  R+G++ +A +  + +L E +   + A++     +   E A L
Sbjct: 190 LGIASVNCVGNSLISMYARSGRMEDARKAFD-ILFEKNLVSYNAIVDGYAKNLKSEEAFL 248

Query: 339 AFGKV 343
            F ++
Sbjct: 249 LFNEI 253



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 77/183 (42%), Gaps = 39/183 (21%)

Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261
           A  +FD MP + +V+WT +I  +   G    A+ LF +M  SG  PD   + SVLSAC+ 
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 262 AGLTDKGLEYFYGMKNKYGL------------------------------QPGPEH---- 287
            GL   G +  +    + GL                              +  PEH    
Sbjct: 69  LGLLALGKQ-LHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 127

Query: 288 YTCMVDLLGRAGQLN-EALELIESML---VEPDGAVWGALLGACKIHKNVELAELAFGKV 343
           +T ++    ++G+ + EA+EL   M+   + P+   + ++L AC    +    E  +   
Sbjct: 128 WTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYA 187

Query: 344 IKL 346
           +KL
Sbjct: 188 VKL 190


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/539 (38%), Positives = 308/539 (57%), Gaps = 23/539 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVD 59
           VFD   + +     +NA+I GY    +  EA+ LF +M  E G   +  TM  +LP C  
Sbjct: 340 VFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACAR 399

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
                     H   VK G+  +  V N LM MY + G +D  R++F  +  + +++WN +
Sbjct: 400 SEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTL 459

Query: 120 ISGYAQNGLATHVLELYREMK----------------SLGVCPDAVTFVGVLSSCAHLGA 163
           I+G    G A    +L  EM+                +    P+ +T + +L  CA L A
Sbjct: 460 ITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAA 519

Query: 164 HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGG 223
            + G E+      +   S+  + +AL++MYA+CG L  +RA+FD +PR+ V++W  +I  
Sbjct: 520 PARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMA 579

Query: 224 YGIHGHGEVAVQLFDEMLKSG-IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQ 282
           YG+HG G+ AV LFDEM   G   P+   F++ L+ACSH+GL D+GLE F+GM+  +G++
Sbjct: 580 YGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVK 639

Query: 283 PGPEHYTCMVDLLGRAGQLNEALELIESMLV-EPDGAVWGALLGACKIHKNVELAELAFG 341
           P P+ + C+VD+LGRAG+L+EA  +I SM   E   + W +LLGAC++H+NVEL E+A  
Sbjct: 640 PTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLLGACRLHRNVELGEVAAE 699

Query: 342 KVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFM 401
           ++ +LEP    +YVLL NIYS A   D  + VR+ MR + + K+PG S++EL G +H FM
Sbjct: 700 RLFELEPGEASHYVLLCNIYSAAGMWDKSVAVRVRMRRQGVAKEPGCSWIELDGAIHRFM 759

Query: 402 VGDRNHHQTVEIYRMLDKL-ENLVQEHDGTKRS---DQKNSEEHLNDTEVHSEKLAIAFG 457
            G+ +H  + E++  +D L E + +E      S      + +E       HSEKLAIAFG
Sbjct: 760 AGESSHPASAEVHAHMDALWERMRREGYAPDTSCVLHDVDEDEKAAMLRYHSEKLAIAFG 819

Query: 458 IINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           ++   PG  I V KNLR+C DCH   K +SK+V R  ++RD  RFHHF+ G CSC DYW
Sbjct: 820 LLRAPPGAAIRVAKNLRVCNDCHEAAKFMSKMVGRDIVLRDVRRFHHFRDGSCSCGDYW 878



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 168/357 (47%), Gaps = 30/357 (8%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGV-EINSVTMLCLLPICV----DPGYLWLG 66
            V YN+LIS   L      A+     M  +G  +++S T++ +L  C     D G   LG
Sbjct: 133 AVSYNSLISALCLFRQWERALDALRDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRR-LG 191

Query: 67  MCCHCICVKFGLDLD-----FSVGNCLMTMYVKCGSVDYGRKLFDQV-----PEKG-LIT 115
              H   +K G  LD     F   N L++MY + G VD  + LF        P  G ++T
Sbjct: 192 REAHAFALKRGF-LDEGRERFPF-NALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVT 249

Query: 116 WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175
           WN MIS   Q G     +E+  +M SLGV PD VTF   L +C+ L   ++G E+   + 
Sbjct: 250 WNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVL 309

Query: 176 ANG-FGSNPFLNNALINMYARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIHGHGEV 232
            +    +N F+ +AL++MYA    +  AR +FD +P   + +  W A+I GY   G  E 
Sbjct: 310 KDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEE 369

Query: 233 AVQLFDEM-LKSGIRPDGTAFVSVLSACSHA-GLTDKGLEYFYGMKNKYGLQPGPEHYTC 290
           A++LF  M  ++G  P  T    VL AC+ + G   K  E  +G   K G+         
Sbjct: 370 ALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGK--EAMHGYVVKRGMAGNRFVQNA 427

Query: 291 MVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE 347
           ++D+  R G+++ A  +  +M+   D   W  L+  C +  +   A  AF  V +++
Sbjct: 428 LMDMYARLGEMDVARRIF-AMIDPRDVVSWNTLITGCVVQGH---AAEAFQLVTEMQ 480



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 139/352 (39%), Gaps = 55/352 (15%)

Query: 83  SVGNCLMTMYVKCGSVDYGRKLFDQVPE--KGLITWNAMISGYAQNGLATHVLELYREMK 140
           +VGN L+T Y +CG +D    LF       +  +++N++IS           L+  R+M 
Sbjct: 101 AVGNALLTAYARCGDLDAALALFAATATELRDAVSYNSLISALCLFRQWERALDALRDML 160

Query: 141 SLGVCP-DAVTFVGVLSSCAHL---GAHSVGLEVEQQIQANGF---GSNPFLNNALINMY 193
           + G     + T V VL +C+HL       +G E        GF   G   F  NAL++MY
Sbjct: 161 AEGRHDVSSFTLVSVLLACSHLPGDDGRRLGREAHAFALKRGFLDEGRERFPFNALLSMY 220

Query: 194 ARCGNLKKARAIFDGMPRK------TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           AR G +  A+++F             VV+W  +I      G    AV++  +M+  G+RP
Sbjct: 221 ARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRP 280

Query: 248 DGTAFVSVLSACSH---------------------------AGLTD--KGLEYFYGMKNK 278
           DG  F S L ACS                            + L D   G E     +  
Sbjct: 281 DGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRV 340

Query: 279 YGLQPGPEH----YTCMVDLLGRAGQLNEALELIESMLVE----PDGAVWGALLGACKIH 330
           + + P P      +  M+    +AG   EALEL   M  E    P       +L AC   
Sbjct: 341 FDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARS 400

Query: 331 KNVELAELAFGKVIKLEPMNTGYYV--LLSNIYSEARNLDGIMRVRMMMRER 380
           +     E   G V+K   M    +V   L ++Y+    +D   R+  M+  R
Sbjct: 401 EGFAGKEAMHGYVVK-RGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPR 451



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 103/249 (41%), Gaps = 52/249 (20%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
           +P + NAL+  YARCG+L  A A+F       +  VS+ ++I    +    E A+    +
Sbjct: 99  SPAVGNALLTAYARCGDLDAALALFAATATELRDAVSYNSLISALCLFRQWERALDALRD 158

Query: 240 MLKSGIRPDGTAF--VSVLSACSH-------------------AGLTDKGLEYF-----Y 273
           ML  G R D ++F  VSVL ACSH                    G  D+G E F      
Sbjct: 159 MLAEG-RHDVSSFTLVSVLLACSHLPGDDGRRLGREAHAFALKRGFLDEGRERFPFNALL 217

Query: 274 GMKNKYGL---------------QPGPEH---YTCMVDLLGRAGQLNEALELIESML--- 312
            M  + GL                PG      +  M+ LL + G+  EA+E++  M+   
Sbjct: 218 SMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSLG 277

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV--LLSNIYSEARNLDGI 370
           V PDG  + + L AC   + + L       V+K   +    +V   L ++Y+    +   
Sbjct: 278 VRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASA 337

Query: 371 MRVRMMMRE 379
            RV  M+ E
Sbjct: 338 RRVFDMVPE 346


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/520 (39%), Positives = 302/520 (58%), Gaps = 6/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE    +  TV + ALI+ Y+    + EAV +       G+  +S T + +L  C   
Sbjct: 128 VFDEMPHPS--TVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARV 185

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G        + G+     V    + +YVKCG +   R++FD++ +K  + W AM+
Sbjct: 186 ADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMV 245

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GYA NG     L+L+  M++ GV PD     G LS+C  LGA  +G +  + +  + F 
Sbjct: 246 GGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFL 305

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            NP L  ALI+MYA+CG+  +A  +F  M +K ++ W A+I G G+ GH + A  L  +M
Sbjct: 306 DNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQM 365

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            KSG++ +   F+ +L +C+H GL   G  YF+ M   Y + P  EHY C+VDLL RAG 
Sbjct: 366 EKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGL 425

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L EA +LI+ M +  +  + GALLG CKIH+N ELAE    ++I+LEP N+G YV+LSNI
Sbjct: 426 LQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNI 485

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK- 419
           YS     +   ++R+ M+E+ ++K P  S+VE +G+VH F VGD++H  + +IY+ LD+ 
Sbjct: 486 YSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDEL 545

Query: 420 -LENLVQEHDGTKRSDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
            LE     ++ T      + E+   +  +  HSEKLAIAF ++ T PG  I V KNLR+C
Sbjct: 546 GLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVC 605

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DCH  IKL+S+I  R+ IVRD  RFH F+ G CSC DYW
Sbjct: 606 SDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 132/265 (49%), Gaps = 2/265 (0%)

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
           P  L  G   H   +K     +  V   L+T+Y +CG +   +++FD++P    ++W A+
Sbjct: 84  PHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTAL 143

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I+ Y   G     + + R   + G+ PD+ T V VL++CA +   + G  V +  +  G 
Sbjct: 144 ITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGI 203

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             + F+  A +++Y +CG + KAR +FD M  K  V+W A++GGY  +GH   A+ LF  
Sbjct: 204 AQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLA 263

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M   G+RPD  A    LSAC+  G  D G +    M +       P   T ++D+  + G
Sbjct: 264 MQAEGVRPDCYAVAGALSACTRLGALDLGRQAIR-MVDWDEFLDNPVLGTALIDMYAKCG 322

Query: 300 QLNEALELIESMLVEPDGAVWGALL 324
              EA  + + M  + D  VW A++
Sbjct: 323 STAEAWVVFQQMR-KKDIIVWNAMI 346


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/511 (39%), Positives = 304/511 (59%), Gaps = 11/511 (2%)

Query: 16  NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVK 75
           N +I GY  +    EAVSL+  M E+GV +++ T   +L  C   G + LG   HC  +K
Sbjct: 80  NTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLK 139

Query: 76  FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLEL 135
            G   D  V N L+  Y  CGS      +FD+   + ++TWN MI+ +   GL+    +L
Sbjct: 140 NGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDL 199

Query: 136 YREMKSL-GVCPDAVTFVGVLSSCAHLGAHSVGL---EVEQQIQANGFGSNPFLNNALIN 191
             EM  L  + PD VT V ++ +CA LG    G       +++       +  L  AL++
Sbjct: 200 LDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLVLETALVD 259

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+CG++  A  +F  M  + V +W A+IGG  +HGHGE A+ LFD+M    + PD   
Sbjct: 260 MYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVT 319

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+++L ACSHAGL D+GL  F  MKNK+ ++P  EHY C+VDLL RA ++++AL  IE+M
Sbjct: 320 FIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENM 379

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            ++ +  +W  LLGAC+   + +LAE    +VI+LEP + G YV+LSN+Y+     D  +
Sbjct: 380 PIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHAL 439

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
           ++R  M+ + ++K PG S++EL G +H F+ GDR+H QT +IY M++++   V   DG  
Sbjct: 440 KLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNL-DGGH 498

Query: 432 RSDQKN------SEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
                N       EE  +   +HSEKLAIA G+I+T  G+ I ++KNLR+C DCH F+K+
Sbjct: 499 VPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKV 558

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            SK+ +R+ + RD +RFHHFK G CSC D+W
Sbjct: 559 TSKVYNREIVARDRSRFHHFKEGSCSCMDFW 589



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/267 (32%), Positives = 133/267 (49%), Gaps = 6/267 (2%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
           G ++Y RKLF Q+        N MI GYA++      + LY  M   GV  D  T+  VL
Sbjct: 59  GDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVL 118

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
           ++CA LGA  +G     ++  NGFGS+ F+ NALI  Y  CG+   A  +FD    + VV
Sbjct: 119 AACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVV 178

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLK-SGIRPDGTAFVSVLSACSHAGLTDKG--LEYF 272
           +W  +I  +   G  E A  L DEM K   +RPD    VS++ AC+  G  ++G  L  +
Sbjct: 179 TWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSY 238

Query: 273 YGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKN 332
               +K+ +       T +VD+  + G ++ AL++   M V  +   W AL+G   +H +
Sbjct: 239 SKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR-NVFTWNALIGGLAMHGH 297

Query: 333 VELAELAFGKV--IKLEPMNTGYYVLL 357
            E A   F ++   KL P +  +  LL
Sbjct: 298 GEDAISLFDQMEHDKLMPDDVTFIALL 324


>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56550-like [Cucumis sativus]
          Length = 579

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/515 (39%), Positives = 316/515 (61%), Gaps = 14/515 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEI-NSVTMLCLLPICVDPGYLWLGMCCH 70
           T  +N++I G+  +S   +A+  + +M      I ++ T   +L  C            H
Sbjct: 69  TEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCKEVH 128

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
              ++ G D D  V   L+  Y   GSV   R++FD++P + L+ WNAMIS ++Q GL  
Sbjct: 129 GSVIRCGYDADVIVCTNLVKCYSAMGSVCIARQVFDKMPARDLVAWNAMISCFSQQGLHQ 188

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             L+ Y +M+S  V  D  T VG++SSCAHLGA ++G+++ +  + NG   + ++ NALI
Sbjct: 189 EALQTYNQMRSENVDIDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSLYVGNALI 248

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MYA+CG+L +A  IFD M RK + +W ++I GYG+HG G  A+  F +ML++ I+P+  
Sbjct: 249 DMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQPNPV 308

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            F+ +L  CSH GL  +G++YF  M +K+ L+P  +HY C+VDL GRAG+L++ALE++ S
Sbjct: 309 TFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGKLDKALEIV-S 367

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
                D  +W  LLG+CKIHKNV + E+A  ++ +L   + G  +LL+ IY+  ++  G+
Sbjct: 368 NSSHNDSVLWRILLGSCKIHKNVTIGEIAMNRLSELGATSAGDCILLATIYAGEKDKAGV 427

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHD-- 428
            R+R M++ +  K  PG+S++E+  +VH F+V D++H  +VE+Y   +KL  ++ +    
Sbjct: 428 ARMRKMIKSQGKKTTPGWSWIEIGEQVHKFVVDDKSHRYSVEVY---EKLREVIHQASFF 484

Query: 429 GTKRSDQKNSEEHLNDTEV-------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHL 481
           G    +  +S + L+  E        HSEKLAIAFG+  T+ GT+I ++KNLR+C DCH 
Sbjct: 485 GYVGDESISSLDMLSTMETLKTSCTYHSEKLAIAFGLARTADGTQIRIVKNLRVCRDCHS 544

Query: 482 FIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           FIK VS   +R+ IVRD  RFHHFK G CSC DYW
Sbjct: 545 FIKAVSVAFNREIIVRDRVRFHHFKGGECSCNDYW 579



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 159/333 (47%), Gaps = 15/333 (4%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM--KSLGVCPDAVTFVG 153
           GS+ Y + LF Q+       WN++I G+AQ+      +  Y +M   S  + PD  TF  
Sbjct: 52  GSLAYAQLLFHQMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSI-PDTFTFSF 110

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
           VL +C  + A     EV   +   G+ ++  +   L+  Y+  G++  AR +FD MP + 
Sbjct: 111 VLKACERIKAERKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGSVCIARQVFDKMPARD 170

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
           +V+W A+I  +   G  + A+Q +++M    +  DG   V ++S+C+H G  + G++  +
Sbjct: 171 LVAWNAMISCFSQQGLHQEALQTYNQMRSENVDIDGFTLVGLISSCAHLGALNIGVQ-MH 229

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNV 333
               + GL         ++D+  + G L++A+ LI   +   D   W +++    +H   
Sbjct: 230 RFARENGLDQSLYVGNALIDMYAKCGSLDQAI-LIFDRMQRKDIFTWNSMIVGYGVHGRG 288

Query: 334 ELAELAFGKVI--KLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGY--S 389
             A   F +++  +++P    +  LL     +    +G+    +M  + RLK +  +   
Sbjct: 289 SEAIYCFQQMLEARIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGC 348

Query: 390 YVELKGRV-----HLFMVGDRNHHQTVEIYRML 417
            V+L GR       L +V + +H+ +V ++R+L
Sbjct: 349 LVDLYGRAGKLDKALEIVSNSSHNDSV-LWRIL 380


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/443 (42%), Positives = 284/443 (64%), Gaps = 10/443 (2%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140
           D    N ++  Y   G V   R++FD   ++   +W++MIS YA+   +   LEL+REM+
Sbjct: 146 DLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMR 205

Query: 141 SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
             GV PD ++ V VLS+C+ +GA ++G EV + +++N    +  L  AL++MYA+CG+++
Sbjct: 206 VAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIE 265

Query: 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
            +  +F  MP K V++W+++I G   HG G  A+ LF EM+  G++P+   F+ VL AC+
Sbjct: 266 NSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACT 325

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320
           H GL + G +YF  M + +G+ P  EHY CMVDLLGRAG + EA+ELI SM  +PD  +W
Sbjct: 326 HVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIW 385

Query: 321 GALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380
             LLGAC+IHKNVE+AE A  K+  L+P+  G+YVLLSNIY++A + +G+  +R  +R  
Sbjct: 386 RTLLGACRIHKNVEIAEEAMAKLKVLDPLADGHYVLLSNIYAQANSWEGVAEMRKTIRRE 445

Query: 381 RLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS------- 433
            +++ PG S +E +  VH F+ GDR+H +  EIY+ML+++ + +++      +       
Sbjct: 446 NIQRVPGRSSIEWENTVHEFVSGDRSHPRIEEIYKMLEEMMDRLRQAGYRPMTSLVLQDI 505

Query: 434 DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQ 493
           D+++ +  L +   HSEKLAIAFG++ T   + + + KNLR C DCH  IKL+S   DR+
Sbjct: 506 DEQSKKRALAE---HSEKLAIAFGLLVTPARSTLRITKNLRACEDCHSAIKLISLAYDRK 562

Query: 494 FIVRDATRFHHFKSGFCSCKDYW 516
            IVRD  RFHHF  G CSCKDYW
Sbjct: 563 LIVRDRNRFHHFSEGQCSCKDYW 585



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 121/222 (54%), Gaps = 4/222 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           ++++IS Y       EA+ L+ +MR  GV  + ++M+ +L  C   G L +G   H    
Sbjct: 181 WSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVE 240

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
              +++D  +G  L+ MY KCG ++   K+F  +P K ++TW++MI G A +GL    L 
Sbjct: 241 SNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALS 300

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALINM 192
           L+ EM S G+ P+ +TF+GVL +C H+G  + G +    + ++  G  P + +   ++++
Sbjct: 301 LFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSM-SDVHGVVPRMEHYGCMVDL 359

Query: 193 YARCGNLKKARAIFDGMPRKT-VVSWTAIIGGYGIHGHGEVA 233
             R G++++A  +   M  K   + W  ++G   IH + E+A
Sbjct: 360 LGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIA 401



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 39/175 (22%)

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD----- 238
           FL N ++  Y   G + +AR +FDGM  + +VSW  +I GY + G   +A ++FD     
Sbjct: 117 FLCNVMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDR 176

Query: 239 --------------------------EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-- 270
                                     EM  +G+ PD  + VSVLSACS  G    G E  
Sbjct: 177 DAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVH 236

Query: 271 -YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
            +    + +  ++ G    T +VD+  + G +  +L++  +M V+ D   W +++
Sbjct: 237 RFVESNRVEVDMKLG----TALVDMYAKCGDIENSLKVFHAMPVK-DVLTWSSMI 286


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/527 (40%), Positives = 303/527 (57%), Gaps = 27/527 (5%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  K     V + A+ISGY  N  V+ A  LF  M E+    N V+   +L   +  
Sbjct: 196 LFDEMPKRN--VVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQA 249

Query: 61  GY------LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLI 114
           G+      L+  M  H +          +  N +M  + + G VD  + +F+++ E+   
Sbjct: 250 GHVEDAAELFNAMPEHPV----------AACNAMMVGFGQRGMVDAAKTVFEKMCERDDG 299

Query: 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
           TW+AMI  Y QN      L  +REM   GV P+  + + +L+ CA L     G EV   +
Sbjct: 300 TWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAM 359

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
               F  + F  +ALI MY +CGNL KA+ +F     K +V W ++I GY  HG GE A+
Sbjct: 360 LRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQAL 419

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
            +F +M  +G+ PDG  ++  L+ACS+ G   +G E F  M     ++PG EHY+CMVDL
Sbjct: 420 GIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDL 479

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           LGR+G + EA +LI++M VEPD  +WGAL+GAC++H+N E+AE A  K+++LEP N G Y
Sbjct: 480 LGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPY 539

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGD-RNHHQTVEI 413
           VLLS+IY+     +   ++R  +  R L K PG S++E   RVHLF  GD   H +   I
Sbjct: 540 VLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAI 599

Query: 414 YRMLDKLENLVQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVV 469
            R+L+KL+ L+ E     DG+      + E+  +    HSE+ A+A+G++    G  I V
Sbjct: 600 LRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRV 659

Query: 470 MKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           MKNLR+CGDCH  IKL++KI  R+ I+RDA RFHHFK GFCSC+DYW
Sbjct: 660 MKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 125/273 (45%), Gaps = 20/273 (7%)

Query: 5   SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLW 64
           SI      V + +L+ GYV + L+++A+ LF +M E+    N V+   LL   +D G + 
Sbjct: 105 SIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPER----NHVSYTVLLGGLLDAGRVN 160

Query: 65  LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYA 124
                         D D      +++ Y + G +   R LFD++P++ +++W AMISGYA
Sbjct: 161 EAR----RLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYA 216

Query: 125 QNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA-NGFGSNP 183
           QNG      +L+  M            VG + +            VE   +  N    +P
Sbjct: 217 QNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAG----------HVEDAAELFNAMPEHP 266

Query: 184 FLN-NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
               NA++  + + G +  A+ +F+ M  +   +W+A+I  Y  +     A+  F EML 
Sbjct: 267 VAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLW 326

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
            G+RP+  + +S+L+ C+   + D G E    M
Sbjct: 327 RGVRPNYPSVISILTVCAALAVLDYGREVHAAM 359



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 122/301 (40%), Gaps = 74/301 (24%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N  +    + G+++  R  F+ +P +   ++NA+++GY +N L    L L+R M S  + 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 146 ----------------PDA-------------VTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
                           PDA             V+F  +L      G  +  + + QQ+  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 177 NG-----------------------FGSNPFLN----NALINMYARCGNLKKARAIFDGM 209
                                    F   P  +     A+++ Y + G + +ARA+FD M
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
           P++ VVSWTA+I GY  +G   +A +LF+ M +     +  ++ ++L     AG  +   
Sbjct: 201 PKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQAGHVEDAA 256

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLL----GRAGQLNEALELIESMLVEPDGAVWGALLG 325
           E F  M         PEH     + +    G+ G ++ A  + E M  E D   W A++ 
Sbjct: 257 ELFNAM---------PEHPVAACNAMMVGFGQRGMVDAAKTVFEKM-CERDDGTWSAMIK 306

Query: 326 A 326
           A
Sbjct: 307 A 307



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 82/201 (40%), Gaps = 40/201 (19%)

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM------ 240
           NA I   AR GN++ ARA F+ MP +T  S+ A++ GY  +   + A+ LF  M      
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 241 ----------LKSGIRPDGTA-------------FVSVLSACSHAGLTDKGLEYFYGMKN 277
                     L+    PD  A             F S+L      GL    +  F  M  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL-GACKIHKNVE-- 334
           +  +      YT ++  L  AG++NEA  L + M  + D   W A+L G C+  +  E  
Sbjct: 141 RNHVS-----YTVLLGGLLDAGRVNEARRLFDEM-PDRDVVAWTAMLSGYCQAGRITEAR 194

Query: 335 --LAELAFGKVIKLEPMNTGY 353
               E+    V+    M +GY
Sbjct: 195 ALFDEMPKRNVVSWTAMISGY 215


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/520 (37%), Positives = 318/520 (61%), Gaps = 7/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD   +   +T  ++ +++G+V      +A+ ++ +MRE GV+ + V M+ ++  C   
Sbjct: 165 VFDRMPRRDRVT--WSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAA 222

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             + +G   H   ++ G+ +D      L+ MY K G +D   ++F  +  +  ++W+AMI
Sbjct: 223 RNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMI 282

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SG+AQNG +   L L+R M++ G+ PD+   V  L +C+++G   +G  V   I    F 
Sbjct: 283 SGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFI-VRRFD 341

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            N  L  A I+MY++CG+L  A+ +F+ +  + ++ W A+I   G HG G+ A+ LF EM
Sbjct: 342 FNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEM 401

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            ++G+RPD   F S+LSA SH+GL ++G  +F  M N + + P  +HY C+VDLL R+G 
Sbjct: 402 NETGMRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSGL 461

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           + EA +L+ SM  EP  A+W ALL  C  +K +EL E     +++L+P + G   L+SN+
Sbjct: 462 VEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNL 521

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+  +  D + +VR +M++   KK PG S +E++G  H F++ D++H Q  EI   + KL
Sbjct: 522 YAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHAFLMEDQSHPQREEIVSKVAKL 581

Query: 421 ENLVQEHDGTKRSD--QKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
           +  +++     R++    + EE + + ++  HSEKLAIAFG++NT PGT +V++KNLR+C
Sbjct: 582 DLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSEKLAIAFGLLNTGPGTRLVIIKNLRVC 641

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           GDCH  IK +SKI DR+ +VRDA RFHHFK G CSC+DYW
Sbjct: 642 GDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 153/322 (47%), Gaps = 15/322 (4%)

Query: 46  NSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLF 105
           +S T    L  C   G L  G          G   D  V + L+ +Y + G++    K+F
Sbjct: 107 DSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVF 166

Query: 106 DQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHS 165
           D++P +  +TW+ M++G+   G     +++YR M+  GV  D V  +GV+ +C       
Sbjct: 167 DRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVR 226

Query: 166 VGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYG 225
           +G  V   +  +G   +     +L++MYA+ G L  A  +F  M  +  VSW+A+I G+ 
Sbjct: 227 MGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFA 286

Query: 226 IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
            +G  + A++LF  M  SGI+PD  A VS L ACS+ G    G       ++ +G     
Sbjct: 287 QNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLG-------RSVHGFIVRR 339

Query: 286 EHYTCM-----VDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
             + C+     +D+  + G L  A +++ +M+ + D  +W A++  C  H   + A   F
Sbjct: 340 FDFNCILGTAAIDMYSKCGSLASA-QMLFNMISDRDLILWNAMIACCGAHGRGQDALTLF 398

Query: 341 GKV--IKLEPMNTGYYVLLSNI 360
            ++    + P +  +  LLS +
Sbjct: 399 QEMNETGMRPDHATFASLLSAL 420


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/512 (39%), Positives = 311/512 (60%), Gaps = 11/512 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +N+LISG+   + +   + L  +MR E G++ N VT++ ++  C   G L +G C H 
Sbjct: 105 VSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACAGVGELDVGKCIHG 164

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           I VK G+ L+  V N L+ +Y KCG ++    LF+ +  + L++WN+M++ +   GLA  
Sbjct: 165 IAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGMSVQSLVSWNSMVAVHVHMGLAEK 224

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            +  +  M+  G+  D  T V +L +C +LG   +   V   I   G   N  +  AL++
Sbjct: 225 GIGYFIMMRRAGINSDQATVVSLLLACENLGVRKLAEAVHGYILNGGLDGNLAIATALLD 284

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +YA+ G L  +  +F GM     V+WTA++  Y +HG G  A++ F+ M++ G+ PD   
Sbjct: 285 LYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSYAMHGRGREAIEHFELMVREGVVPDHVT 344

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F  +LSACSH+GL ++G  YF  M   YG++   EHY+CMVDLLGR+G LN+A +LI+SM
Sbjct: 345 FTHLLSACSHSGLVEEGKNYFKIMYEFYGVELRVEHYSCMVDLLGRSGHLNDAYKLIKSM 404

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            +EP+  VWGAL+GAC++  N+EL +    ++  L+P ++  Y+ LSN+YS A       
Sbjct: 405 PMEPNSGVWGALIGACRVRGNIELGKEVAERLFSLDPSDSRNYITLSNMYSAAGQWRDAS 464

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
           +VR +M+ER L ++PG SY+E   ++H F++GD++H  T +IY   +KLE LV+++    
Sbjct: 465 KVRALMKERVLIRNPGCSYIEHGNKIHCFVMGDQSHPDTEQIY---NKLEELVRKNREVG 521

Query: 432 RSDQKNSEEHLNDTEV-------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
            + +     H  D EV       HSEKLAIAFG++ T+ G  +++ KN+RICGDCH F K
Sbjct: 522 FASKTEYVLHDVDEEVKEDLINKHSEKLAIAFGLLVTNAGMPLIITKNIRICGDCHGFAK 581

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           L+S I  R  I+RD  RFHHF +G CSC DYW
Sbjct: 582 LISLIEKRTIIIRDTKRFHHFTNGLCSCGDYW 613



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 136/248 (54%), Gaps = 3/248 (1%)

Query: 84  VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG-LATHVLELYREMKSL 142
           +G+ L++ YV+ G      +LFD++P+K L++WN++ISG+++   L   +  L+R    +
Sbjct: 75  IGDQLVSSYVELGCTKDALELFDELPDKDLVSWNSLISGFSRRADLGICLGLLFRMRFEM 134

Query: 143 GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202
           G+ P+ VT + V+S+CA +G   VG  +      +G      + N+LIN+Y +CG L+ A
Sbjct: 135 GLKPNEVTVIPVVSACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAA 194

Query: 203 RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262
             +F+GM  +++VSW +++  +   G  E  +  F  M ++GI  D    VS+L AC + 
Sbjct: 195 CCLFEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACENL 254

Query: 263 GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGA 322
           G+  K  E  +G     GL       T ++DL  + G L+++ ++   M + PD   W A
Sbjct: 255 GVR-KLAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGM-INPDAVAWTA 312

Query: 323 LLGACKIH 330
           +L +  +H
Sbjct: 313 MLSSYAMH 320



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 121/259 (46%), Gaps = 5/259 (1%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           S    V +N++++ +V   L  + +  F  MR  G+  +  T++ LL  C + G   L  
Sbjct: 202 SVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACENLGVRKLAE 261

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
             H   +  GLD + ++   L+ +Y K G++    K+F  +     + W AM+S YA +G
Sbjct: 262 AVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSYAMHG 321

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN- 186
                +E +  M   GV PD VTF  +LS+C+H G    G     +I    +G    +  
Sbjct: 322 RGREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNY-FKIMYEFYGVELRVEH 380

Query: 187 -NALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
            + ++++  R G+L  A  +   MP +     W A+IG   + G+ E+  ++  E L S 
Sbjct: 381 YSCMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWGALIGACRVRGNIELGKEV-AERLFSL 439

Query: 245 IRPDGTAFVSVLSACSHAG 263
              D   ++++ +  S AG
Sbjct: 440 DPSDSRNYITLSNMYSAAG 458


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/523 (41%), Positives = 302/523 (57%), Gaps = 11/523 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGK-MREQGVEINSVTMLCLLPICVD 59
           VFD+  +     V +N++I G+  N+L   AV +F   +RE+ V  N V++  +L  C +
Sbjct: 67  VFDQMPERN--LVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACAN 124

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
            G L  G   H + VKFGL     V N LM MY KC   D G KLF  V ++ ++TWN +
Sbjct: 125 MGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVL 184

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           + G+ QN         +  M+  G+ PD  +F  VL S A L A   G  +  QI   G+
Sbjct: 185 VMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGY 244

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             N  +  +LI MYA+CG+L  A  +F+G+    V+SWTA+I  Y +HG     ++LF+ 
Sbjct: 245 VKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEH 304

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           ML  GI P    FV VLSACSH G  ++GL +F  MK  + + PGPEHY CMVDLLGRAG
Sbjct: 305 MLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAG 364

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
            L+EA   IESM ++P  +VWGALLGAC+ + N+++   A  ++ ++EP N G YVLL+N
Sbjct: 365 WLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLAN 424

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRM--- 416
           + + +  L+    VR +M    ++K+PG S++++K    +F   DR+H  + EIY+M   
Sbjct: 425 MCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYKMLEK 484

Query: 417 ---LDKLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
              L K +  V E +      ++N EE       HSEKLA+AFG++     + I + KNL
Sbjct: 485 LEKLVKKKGYVAETEFVTNHLEENEEEQ--GLWYHSEKLALAFGLLTLPIDSPIRIKKNL 542

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           R CG CH  +KL SKI DR+ IVRD  RFH F  GFCSC DYW
Sbjct: 543 RTCGHCHTVMKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 585



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 166/371 (44%), Gaps = 36/371 (9%)

Query: 38  MREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS 97
           MR  G   N  T   +L        +  G   H +  K G D +  VG  L+ MY KC  
Sbjct: 1   MRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCAD 60

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYRE-MKSLGVCPDAVTFVGVLS 156
           +    ++FDQ+PE+ L++WN+MI G+  N L    + ++++ ++   V P+ V+   VLS
Sbjct: 61  MHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLS 120

Query: 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS 216
           +CA++G  + G +V   +   G     ++ N+L++MY +C    +   +F  +  + VV+
Sbjct: 121 ACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVT 180

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS-----HAG--LTDKGL 269
           W  ++ G+  +   E A   F  M + GI PD  +F +VL + +     H G  + D+ +
Sbjct: 181 WNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQII 240

Query: 270 EYFY------------------GMKNKYGLQPGPE-----HYTCMVDLLGRAGQLNEALE 306
           +  Y                   + + Y +  G E      +T M+      G  N+ +E
Sbjct: 241 KLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIE 300

Query: 307 LIESML---VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTG--YYVLLSNIY 361
           L E ML   +EP    +  +L AC     VE     F  + K+  MN G  +Y  + ++ 
Sbjct: 301 LFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLL 360

Query: 362 SEARNLDGIMR 372
             A  LD   R
Sbjct: 361 GRAGWLDEAKR 371


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/534 (39%), Positives = 315/534 (58%), Gaps = 30/534 (5%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQG---VEINSVTMLCLLPICVDPGYL----WL 65
           V +N+LISG+ LN     A+  F  M  +G   VE N VT++ LL  C + G +    W+
Sbjct: 234 VSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWV 293

Query: 66  GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
                       +  D  V   L+ M+ +CG++   R++FD V  K ++ W+AMI+GY Q
Sbjct: 294 HEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQ 353

Query: 126 NGLATHVLELYREMKSLG------VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
                  L L+R+M   G      V P+AVT V V+++C+ LGA      + +   A G 
Sbjct: 354 GSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGL 413

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIHGHGEVAVQLF 237
             +  + +ALI+M A+CG+++  R +F  M    +TVVSW+++IG  GIHG G+ A++LF
Sbjct: 414 DQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELF 473

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
            EM   G  P+   ++SVLSACSHAGL ++G   F  M+  YG+ P  +HY C+VDLLGR
Sbjct: 474 SEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGR 533

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
           AG L+EA  +I +M ++ D A+WG+LL AC +H N +L E+   K++ L+  + G++VLL
Sbjct: 534 AGHLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLL 593

Query: 358 SNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML 417
           +N+Y +A   D ++R+R+ +R   L+K PG S++E+   V+ FM  DR+H ++  IY+ L
Sbjct: 594 ANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKEL 653

Query: 418 DKLENLVQEHDGTKRSDQKNSEEH-----LNDTEVHSEKLAIAFGII----------NTS 462
           D L+  V++          N E+      +   + HSE+LAIAFG+I          +  
Sbjct: 654 DGLDERVRKAAKYVTETGLNVEDGDIAGLILRCKYHSERLAIAFGLIMIDRHSTCSCSLR 713

Query: 463 PGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
             T I + KNLR+C DCH + KLVSK++DR+ IVRDA RFHHF+ GFCSC DYW
Sbjct: 714 TATPIRITKNLRVCRDCHAYTKLVSKVIDRELIVRDAHRFHHFRDGFCSCGDYW 767



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 119/390 (30%), Positives = 188/390 (48%), Gaps = 37/390 (9%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMR----EQGVE---INSVTMLCL 53
           VFDE  + +   V + ALIS Y  N  V EA   FG+MR      G E   ++ V++  L
Sbjct: 109 VFDEMPEGSVDVVSWTALISAYSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGAL 168

Query: 54  LPICV---DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP- 109
           +  C        L  G   H + VK+G  +   +GN ++ MY  C  V    ++F+ +P 
Sbjct: 169 VSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPI 228

Query: 110 -EKGLITWNAMISGYAQNGLATHVLELYREMKSLG---VCPDAVTFVGVLSSCAHLGAHS 165
            ++ +++WN++ISG+  NG A   L  + +M S G   V P+ VT + +L SCA LG   
Sbjct: 229 EQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVE 288

Query: 166 VGLEVEQQIQANG----FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
               V + I +         +  +  AL++M+ARCGNL  AR IFDG+  K VV W+A+I
Sbjct: 289 TSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMI 348

Query: 222 GGYGIHGHGEVAVQLFDEMLKSG------IRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
            GY      E A++LF +ML  G      ++P+    VSV++ACS  G +         M
Sbjct: 349 AGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSA-----SM 403

Query: 276 KNKYGLQPGPEH----YTCMVDLLGRAGQLNEALELIESMLVEPDGAV-WGALLGACKIH 330
            +KY +  G +      + ++D+  + G +    ++   M       V W +++GA  IH
Sbjct: 404 IHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIH 463

Query: 331 KNVELAELAFGKVIK--LEPMNTGYYVLLS 358
              + A   F ++     EP    Y  +LS
Sbjct: 464 GEGKRALELFSEMRTGGYEPNEITYISVLS 493



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 160/338 (47%), Gaps = 30/338 (8%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T  +N+LI+     +    A++ F +M+   V  N+ T   LL  C     L   +  H 
Sbjct: 18  TFHWNSLIAKNATQN-PQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQVHA 76

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG--LITWNAMISGYAQNGLA 129
              + GL  D      L+  Y KCG   Y  ++FD++PE    +++W A+IS Y+ NG  
Sbjct: 77  YLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCV 136

Query: 130 THVLELYREMKSL---------GVCPDAVTFVGVLSSCAHLGAHS----VGLEVEQQIQA 176
               + +  M+ +         GV  D V+   ++S+CA +G  S     G  V   +  
Sbjct: 137 DEAFKAFGRMRWMRGWDGSECCGV--DVVSLGALVSACA-VGCGSNCLRRGSAVHGLVVK 193

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMP--RKTVVSWTAIIGGYGIHGHGEVAV 234
            GFG +  L N++++MY+ C ++  A  +F+G+P  ++ VVSW ++I G+ ++G  E A+
Sbjct: 194 YGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERAL 253

Query: 235 QLFDEMLKSG---IRPDGTAFVSVLSACSHAGLTDKGL---EYFYGMKNKYGLQPGPEHY 288
           + F++M+  G   + P+    +++L +C+  G  +      EY     +   +       
Sbjct: 254 RTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVL 313

Query: 289 TCMVDLLGRAGQLNEALELIESMLVEPDGAV-WGALLG 325
           T ++D+  R G L  A E+ +   VE    V W A++ 
Sbjct: 314 TALLDMHARCGNLALAREIFDG--VEGKNVVCWSAMIA 349



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 2/124 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF E  +ST   V ++++I    ++     A+ LF +MR  G E N +T + +L  C   
Sbjct: 439 VFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHA 498

Query: 61  GYLWLGMCC-HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG-LITWNA 118
           G +  G  C + +   +G+        CL+ +  + G +D    +   +P K  L  W +
Sbjct: 499 GLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGS 558

Query: 119 MISG 122
           +++ 
Sbjct: 559 LLAA 562


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/548 (37%), Positives = 318/548 (58%), Gaps = 37/548 (6%)

Query: 5   SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLW 64
            I++ +L V +N LI  +   +  S+A   + +M +  +  +++T   L+    +   + 
Sbjct: 78  QIQNPNLFV-FNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECVV 136

Query: 65  LGMCCHCICVKFGLDLDFSVGNCLMTMYV------------------------------- 93
           +G   H   V+FG   D  V N L+ MY                                
Sbjct: 137 VGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYC 196

Query: 94  KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVG 153
           KCG V+  R++FD++P + L TW+ MI+GYA+N      ++L+  MK  GV  +    V 
Sbjct: 197 KCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVS 256

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
           V+SSCAHLGA   G    + +  +    N  L  AL++MY RCG ++KA  +F+ +P K 
Sbjct: 257 VISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKD 316

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
            +SW++II G  +HGH   A+  F +M++ G  P      +VLSACSH GL DKGLE + 
Sbjct: 317 SLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYE 376

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNV 333
            MK  YG++P  EHY C+VD+LGRAG+L EA   I  M V+P+  + GALLGACKI+KN 
Sbjct: 377 NMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACKIYKNT 436

Query: 334 ELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVEL 393
           E+AE     +I+++P ++GYYVLLSNIY+ A   + +  +R +M+E+ +KK PG+S +E+
Sbjct: 437 EVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLIEI 496

Query: 394 KGRVHLFMVGDRNHHQTV-EIYRMLDKLENLVQ--EHDGTKRSDQKNSEEHLNDTEV--H 448
            G+++ F +GD   H  + +I R+ +++   ++   + G       + +E   +T +  H
Sbjct: 497 DGKINKFSMGDDQKHPEMGKIKRLWEEILGKIRLIGYKGNTGDAFFDVDEEEKETAIHMH 556

Query: 449 SEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSG 508
           SEKLAIA+G++ T  GT I ++KNLR+C DCH   KL+S++  R+FIVRD  RFHHF++G
Sbjct: 557 SEKLAIAYGMMKTKTGTTIRIVKNLRVCEDCHTATKLISEVYGREFIVRDRNRFHHFRNG 616

Query: 509 FCSCKDYW 516
            CSC+DYW
Sbjct: 617 LCSCRDYW 624



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 127/281 (45%), Gaps = 39/281 (13%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           Y   +F Q+    L  +N +I  ++     +     Y +M    + PD +TF  ++ +  
Sbjct: 71  YAYGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKAST 130

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
            +    VG +   QI   GF ++ ++ N+L++MYA CG +  A  IF  MP + VVSWT+
Sbjct: 131 EMECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTS 190

Query: 220 IIGGY--------------------------GIHGHG-----EVAVQLFDEMLKSGIRPD 248
           ++ GY                           I+G+      E A+ LF+ M + G+  +
Sbjct: 191 MVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVAN 250

Query: 249 GTAFVSVLSACSHAG---LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
            T  VSV+S+C+H G     ++  EY         L  G    T +VD+  R G++ +A+
Sbjct: 251 ETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILG----TALVDMYWRCGEIEKAI 306

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
            + E  L + D   W +++    +H +   A   F ++++L
Sbjct: 307 RVFEE-LPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRL 346


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/509 (39%), Positives = 299/509 (58%), Gaps = 9/509 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +  +IS Y    L  +A+     M  +GV  N  T   +L  C   G   L    HC
Sbjct: 31  VVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPNMFTYSSVLRAC--DGLFNLRQL-HC 87

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K GLD D  V + L+ +Y + G ++   ++FD++    L+ W+++I+G+AQN     
Sbjct: 88  CIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDE 147

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L L++ MK  G      T   VL +C  L    +G +V   +    +  +  LNNAL++
Sbjct: 148 ALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQV--HVHVLKYDQDLILNNALLD 205

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY +CG+L+ A A+F  M  K V+SW+ +I G   +G+ + A++LF+ M   GI+P+   
Sbjct: 206 MYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVT 265

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            V VL ACSHAGL ++GL YF+ MK  +G+ PG EHY CM+DLLGRAG+L+EA++LI  M
Sbjct: 266 IVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEM 325

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
             EPD   W ALL AC++H+NV++A  A  ++++L+P + G YVLLSNIY+  +  + + 
Sbjct: 326 ECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRLDPQDAGTYVLLSNIYANTQRWNDVA 385

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD----KLENLVQEH 427
            VR  M  R +KK+PG S++E+  ++H F++GDR+H Q  EI   L+    KL  +    
Sbjct: 386 EVRRTMTNRGIKKEPGCSWIEVSKQIHAFILGDRSHPQIREINIQLNQLIYKLMGVGYVP 445

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           D          E+  +    HSEKLAI FG+++   G  I + KNLRICGDCHLF KL++
Sbjct: 446 DTNFVLQDLEGEQMQDSLRYHSEKLAIVFGLMSLPRGQTIRIRKNLRICGDCHLFTKLLA 505

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K+  R  ++RD  R+HHF+ G CSC D+W
Sbjct: 506 KMEQRIIVIRDPVRYHHFQDGLCSCGDFW 534



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 121/241 (50%), Gaps = 9/241 (3%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+ MYVK G +   + +FD++P++ +++W  MIS Y+   L    LE    M   GV 
Sbjct: 4   NILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVR 63

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P+  T+  VL +C  L       ++   I   G  S+ F+ +ALI++Y+R G L+ A  +
Sbjct: 64  PNMFTYSSVLRACDGLFNLR---QLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRV 120

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           FD M    +V W++II G+  +  G+ A++LF  M ++G     T   SVL AC+   L 
Sbjct: 121 FDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALL 180

Query: 266 DKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
           + G + + + +K    L         ++D+  + G L +A  +   M VE D   W  ++
Sbjct: 181 ELGRQVHVHVLKYDQDLILN----NALLDMYCKCGSLEDANAVFVRM-VEKDVISWSTMI 235

Query: 325 G 325
            
Sbjct: 236 A 236



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 74/142 (52%), Gaps = 5/142 (3%)

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
           FL N LINMY + G L  A+ +FD MP + VVSWT +I  Y      + A++    ML+ 
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
           G+RP+   + SVL AC   GL +  L   +    K GL       + ++D+  R G+L  
Sbjct: 61  GVRPNMFTYSSVLRACD--GLFN--LRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELEN 116

Query: 304 ALELIESMLVEPDGAVWGALLG 325
           AL + + M V  D  VW +++ 
Sbjct: 117 ALRVFDEM-VTGDLVVWSSIIA 137


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/509 (38%), Positives = 301/509 (59%), Gaps = 4/509 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           ++ +  +I+G + N L  EA+ +F +MR  G  ++  T   +L  C     L  G   H 
Sbjct: 235 SISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHA 294

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             ++     +  VG+ L+ MY KC S+     +F ++P+K +I+W AM+ GY QNG +  
Sbjct: 295 YVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEE 354

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            ++++ EM+  GV PD  T   V+SSCA+L +   G +   +   +G  S   ++NALI 
Sbjct: 355 AVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALIT 414

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +Y +CG+ + +  +F  M  +  VSWTA++ GY   G     + LF+ ML  G++PDG  
Sbjct: 415 LYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVT 474

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+ VLSACS AGL +KGL+YF  M  ++G+ P  +H TC++DLLGRAG+L EA   I +M
Sbjct: 475 FIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNM 534

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
              PD   W  LL +C++H ++E+ + A   +I LEP N   YVLLS++Y+     D + 
Sbjct: 535 PCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVA 594

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLE-NLVQE---H 427
           ++R  MR++R++K+PGYS+++ KG+VH+F   D++     +IY  L+KL   +++E    
Sbjct: 595 QLRRGMRDKRVRKEPGYSWIKYKGKVHVFSADDQSSPFLGQIYAELEKLNYKMIEEGYVP 654

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           D +         E +     HSEKLAIAFG+I   PG  I V+KNLR+CGDCH   K +S
Sbjct: 655 DMSSVLHDVEESEKIKMLNHHSEKLAIAFGLIFVPPGLPIRVIKNLRVCGDCHNATKFIS 714

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KI  R+ +VRDA RFH FK G CSC D+W
Sbjct: 715 KITQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 114/398 (28%), Positives = 188/398 (47%), Gaps = 65/398 (16%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +N  ISGY      S+AV ++  M ++  + +N +T   +L +C     + LG   + 
Sbjct: 103 VSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQING 162

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL------------------ 113
             +KFG   D  VG+ L+ MY K G +   ++ FD++PE+ +                  
Sbjct: 163 QILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEE 222

Query: 114 -------------ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160
                        I+W  MI+G  QNGL    L+++REM+  G   D  TF  VL++C  
Sbjct: 223 SQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGS 282

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           L A   G ++   +       N F+ +AL++MY++C ++K A  +F  MP+K V+SWTA+
Sbjct: 283 LLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAM 342

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEY--------- 271
           + GYG +G  E AV++F EM ++G+ PD     SV+S+C++    ++G ++         
Sbjct: 343 LVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGL 402

Query: 272 --FYGMKNK----YGLQPGPEH---------------YTCMVDLLGRAGQLNEALELIES 310
             F  + N     YG     E+               +T ++    + G+ NE + L E 
Sbjct: 403 ISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFER 462

Query: 311 ML---VEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345
           ML   ++PDG  +  +L AC     VE     F  +IK
Sbjct: 463 MLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIK 500



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 113/270 (41%), Gaps = 63/270 (23%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           LL +C +          HC+ +K     +  + N L+T Y K G++ Y   +FD +P+  
Sbjct: 11  LLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPN 70

Query: 113 LITWNAMISGYAQNGLATHVLELYREMK---------------SLGVCPDAV-------- 149
           L +WN ++S Y++ GL + + +++  M                + G C DAV        
Sbjct: 71  LFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLK 130

Query: 150 ---------TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
                    TF  +L  C+      +G ++  QI   GFGS+ F+ + L++MY + G + 
Sbjct: 131 DAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIY 190

Query: 201 KARAIFDGMPRKTVV-------------------------------SWTAIIGGYGIHGH 229
            A+  FD MP + VV                               SWT +I G   +G 
Sbjct: 191 DAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGL 250

Query: 230 GEVAVQLFDEMLKSGIRPDGTAFVSVLSAC 259
              A+ +F EM  +G   D   F SVL+AC
Sbjct: 251 EREALDMFREMRLAGFAMDQFTFGSVLTAC 280


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/508 (37%), Positives = 314/508 (61%), Gaps = 5/508 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++ +++G+V      +A+ ++ +MRE GV+ + V M+ ++  C     + +G   H  
Sbjct: 175 VTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGH 234

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ G+ +D      L+ MY K G +D   ++F  +  +  ++W+AMISG+AQNG +   
Sbjct: 235 LLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEA 294

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+R M++ G+ PD+   V  L +C+++G   +G  V   I    F  N  L  A I+M
Sbjct: 295 LRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFI-VRRFDFNCILGTAAIDM 353

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++CG+L  A+ +F+ +  + ++ W A+I   G HG G+ A+ LF EM ++G+RPD   F
Sbjct: 354 YSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATF 413

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S+LSA SH+GL ++G  +F  M N + + P  +HY C+VDLL R+G + EA +L+ SM 
Sbjct: 414 ASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMK 473

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            EP  A+W ALL  C  +K +EL E     +++L+P + G   L+SN+Y+  +  D + +
Sbjct: 474 AEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQ 533

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR +M++   KK PG S +E++G  H+F++ D++H Q  EI   + KL+  +++     R
Sbjct: 534 VRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPR 593

Query: 433 SD--QKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
           ++    + EE + + ++  HSE+LAIAFG++NT PGT +V++KNLR+CGDCH  IK +SK
Sbjct: 594 TEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISK 653

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           I DR+ +VRDA RFHHFK G CSC+DYW
Sbjct: 654 IADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 152/322 (47%), Gaps = 15/322 (4%)

Query: 46  NSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLF 105
           +S T    L  C   G L  G          G   D  V + L+ +Y + G++    K+F
Sbjct: 107 DSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVF 166

Query: 106 DQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHS 165
            ++P +  +TW+ M++G+   G     +++YR M+  GV  D V  +GV+ +C       
Sbjct: 167 VRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVR 226

Query: 166 VGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYG 225
           +G  V   +  +G   +     +L++MYA+ G L  A  +F  M  +  VSW+A+I G+ 
Sbjct: 227 MGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFA 286

Query: 226 IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
            +G  + A++LF  M  SGI+PD  A VS L ACS+ G    G       ++ +G     
Sbjct: 287 QNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLG-------RSVHGFIVRR 339

Query: 286 EHYTCM-----VDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
             + C+     +D+  + G L  A +++ +M+ + D  +W A++  C  H   + A   F
Sbjct: 340 FDFNCILGTAAIDMYSKCGSLASA-QMLFNMISDRDLILWNAMIACCGAHGRGQDALTLF 398

Query: 341 GKV--IKLEPMNTGYYVLLSNI 360
            ++    + P +  +  LLS +
Sbjct: 399 QEMNETGMRPDHATFASLLSAL 420


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/548 (35%), Positives = 311/548 (56%), Gaps = 49/548 (8%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+ISGYV + + ++A  LF +M  + V ++  T   +L  C + G+   G   H  
Sbjct: 266 VVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQ 325

Query: 73  CVK----FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA---------- 118
            ++    F  +    V N L+T+Y K G +   +++FD +  K +++WN           
Sbjct: 326 IIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGC 385

Query: 119 ---------------------MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
                                M+SGY   GL+   L+L+ +M++  V P   T+ G +++
Sbjct: 386 LDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAA 445

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
           C  LGA   G ++   +   GF ++    NAL+ MYA+CG +  AR +F  MP    VSW
Sbjct: 446 CGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSW 505

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
            A+I   G HGHG  A++LFD+M+  GI PD  +F+++L+AC+HAGL D+G  YF  MK 
Sbjct: 506 NAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKR 565

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
            +G+ PG +HY  ++DLLGR+G++ EA +LI++M  EP  ++W A+L  C+ + ++E   
Sbjct: 566 DFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGA 625

Query: 338 LAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRV 397
            A  ++ ++ P + G Y+LLSN YS A       RVR +MR+R +KK+PG S++E+  ++
Sbjct: 626 YAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKI 685

Query: 398 HLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTE---------VH 448
           H+F+VGD  H +  E+Y+ L+ +   ++     K     +++  L+D E          H
Sbjct: 686 HVFLVGDTKHPEAQEVYQFLEVIGARMR-----KLGYVPDTKFVLHDMEPHEKEYILFAH 740

Query: 449 SEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSG 508
           SEKLA+ FG++   PG  + V+KNLRICGDCH  +  +SK V R+ +VRD  RFHHFK G
Sbjct: 741 SEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDG 800

Query: 509 FCSCKDYW 516
            CSC +YW
Sbjct: 801 ECSCGNYW 808



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 154/347 (44%), Gaps = 46/347 (13%)

Query: 2   FDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDP 60
           FD    +   TV +NA++S +   SL + AVS+F  +   G +  +  +   L+      
Sbjct: 117 FDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQM 176

Query: 61  GYLWLGMCC--HCICVKFGLDLDFSVGNCLMTMYVKC----------------------- 95
             L    C   HC  +K G     SV N L+ +Y+KC                       
Sbjct: 177 HNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLT 236

Query: 96  -----------GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGV 144
                      G V+  R +F++V  K  + WNAMISGY Q+G+     EL+R M S  V
Sbjct: 237 WTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKV 296

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQI---QANGFGSNPF-LNNALINMYARCGNLK 200
             D  TF  VLS+CA+ G    G  V  QI   Q N        +NNAL+ +Y++ G + 
Sbjct: 297 PLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIV 356

Query: 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
            A+ IFD M  K VVSW  I+ GY   G  + AV++F  M       +  +++ ++S   
Sbjct: 357 IAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYK----NDLSWMVMVSGYV 412

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           H GL++  L+ F  M+ +  ++P    Y   +   G  G L    +L
Sbjct: 413 HGGLSEDALKLFNQMRAE-DVKPCDYTYAGAIAACGELGALKHGRQL 458



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%)

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S+P L   LI++Y    +L    A+F   P    V+ T+++  +   G    A   FD +
Sbjct: 61  SHPHLTLRLIHLYTLSPDLATPAALFRSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAV 120

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
             +  R D     +++SA + A L    +  F+ +     L+P    +T ++  +G+   
Sbjct: 121 PPA--RRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHN 178

Query: 301 L 301
           L
Sbjct: 179 L 179


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/539 (38%), Positives = 311/539 (57%), Gaps = 38/539 (7%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           YN+LI     +    EA+ L+  M + G++ + +T   ++  C +    W G+  H   V
Sbjct: 134 YNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVV 193

Query: 75  KFGLDLDFSVGNCLMTMYVK-------------CGSVD------------------YGRK 103
           K G + D  + + L+ +Y               C + D                  + R 
Sbjct: 194 KSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARM 253

Query: 104 LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163
           +FD++  + +I+WN MI+GYA  G     L L+ +M+++GV P   T V +LS+CAHLGA
Sbjct: 254 VFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGA 313

Query: 164 HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGG 223
              GL +   I  N    N  +  AL++MYA+CG +  A  +F+ M  K V++W  II G
Sbjct: 314 LDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAG 373

Query: 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP 283
             IHG+ + A QLF EM ++G+ P+   FV++LSACSHAG+ D+G +    M + YG++P
Sbjct: 374 MAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEP 433

Query: 284 GPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
             EHY C++DLL RAG L EA+ELI +M +EP+ +  GALLG C+IH N EL E+   ++
Sbjct: 434 KVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRL 493

Query: 344 IKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVG 403
           I L+P ++G Y+LLSNIY+ A+  D   +VR +M+   + K PG S +ELKG VH F+ G
Sbjct: 494 INLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAG 553

Query: 404 DRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKN------SEEHLNDTEVHSEKLAIAFG 457
           D +H ++ +IY  L+++   ++   G   +D  N       E+  +   VHSEKLAIA+G
Sbjct: 554 DWSHPESNKIYEKLNEIHTRLKSAIGYS-ADTGNVLLDMEEEDKEHALAVHSEKLAIAYG 612

Query: 458 IINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +++      I ++KNLR+C DCH  IKL+SK+  R+ IVRD  RFHHF+ G CSC D+W
Sbjct: 613 LLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 671



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 124/223 (55%), Gaps = 4/223 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N +I+GY +    +EA++LF +MR  GV+    T++ LL  C   G L  G+  H  
Sbjct: 264 ISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTY 323

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
                ++++  VG  L+ MY KCG +    ++F+ +  K ++ WN +I+G A +G     
Sbjct: 324 INDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEA 383

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
            +L++EMK  GV P+ +TFV +LS+C+H G    G ++     ++ +G  P + +   +I
Sbjct: 384 QQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKL-LDCMSSSYGIEPKVEHYGCVI 442

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEV 232
           ++ AR G L++A  +   MP +   S   A++GG  IHG+ E+
Sbjct: 443 DLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFEL 485



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 135/292 (46%), Gaps = 35/292 (11%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           Y + +F  +       +N++I   + +      L LY  M   G+ PD +T+  V+ +C 
Sbjct: 118 YAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACN 177

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
                  GL V   +  +GF  + ++ ++LI++YA   +L  A+ +F+    + VVSW A
Sbjct: 178 ESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNA 237

Query: 220 IIGGYGIH---GHGEV----------------------------AVQLFDEMLKSGIRPD 248
           +I GY  H   GH  +                            A+ LFD+M   G++P 
Sbjct: 238 MIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPT 297

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
               VS+LSAC+H G  DKGL + +   N   ++      T +VD+  + G+++ A ++ 
Sbjct: 298 EATVVSLLSACAHLGALDKGL-HLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVF 356

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
            +M  + D   W  ++    IH NV+ A+  F ++ +  +EP +  +  +LS
Sbjct: 357 NAMESK-DVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILS 407


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/510 (39%), Positives = 302/510 (59%), Gaps = 7/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N +  GY  ++    A SLFG++   G+  +  T   LL  C     L  GM  HC 
Sbjct: 96  ILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMGLHCF 155

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK GL+ +  +   L+ MY +C  ++  R +FD++ +  ++++NA+I+GYA++      
Sbjct: 156 AVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEA 215

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+RE+++  + P  VT + V+ SCA LGA  +G  + + ++  GF     +N ALI+M
Sbjct: 216 LSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDM 275

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           +A+CG+L  A +IF+GM  +   +W+A+I  +  HG G  A+ +F+EM + G+RPD   F
Sbjct: 276 FAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITF 335

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + +L ACSHAGL ++G  YFY M   YG+ PG +HY CMVDLLGRAG L+EA   ++ + 
Sbjct: 336 LGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLE 395

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           ++    +W  LL AC  H NVE+A+    ++ +L+  + G YV+LSN+Y+     + +  
Sbjct: 396 IKATPILWRTLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNLYARVGRWEDVNH 455

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD------KLENLVQE 426
           +R +M++R + K PG S VE+   VH F  GD  H  +VE+ R LD      KL   V +
Sbjct: 456 LRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCVSVELRRALDELMKEIKLVGYVPD 515

Query: 427 HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
                 +D +   + L     HSEKLA+AFG++NT PGT I V KNLRICGDCH   KL+
Sbjct: 516 TSLVYHADMEEEGKELV-LRYHSEKLAMAFGLLNTPPGTTIRVAKNLRICGDCHNAAKLI 574

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           S I  R+ ++RD  RFH F+ G CSC D+W
Sbjct: 575 SFIFGRKIVIRDVQRFHRFEDGKCSCGDFW 604



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 125/260 (48%), Gaps = 5/260 (1%)

Query: 74  VKFGLDLDFSVGNCLM---TMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
           +K  L  D SV   L+   T+      +D+   LFDQ+ +K +I +N M  GYA++    
Sbjct: 53  IKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPY 112

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
               L+ E+   G+ PD  TF  +L +CA   A   G+ +       G   N ++   LI
Sbjct: 113 LAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLI 172

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           NMYA C ++  AR +FD M +  +VS+ AII GY        A+ LF E+  S I P   
Sbjct: 173 NMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDV 232

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
             +SV+ +C+  G  D G ++ +    K G     +  T ++D+  + G L +A+ + E 
Sbjct: 233 TMLSVIMSCALLGALDLG-KWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEG 291

Query: 311 MLVEPDGAVWGALLGACKIH 330
           M V  D   W A++ A   H
Sbjct: 292 MRVR-DTQAWSAMIVAFATH 310



 Score = 38.5 bits (88), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 5/133 (3%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM-CCH 70
           T  ++A+I  +  +    +A+S+F +M+ +GV  + +T L LL  C   G +  G    +
Sbjct: 297 TQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFY 356

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL-ITWNAMISGYAQNG-- 127
            +   +G+        C++ +  + G +D      D++  K   I W  ++S  + +G  
Sbjct: 357 SMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHGNV 416

Query: 128 -LATHVLELYREM 139
            +A  V+E   E+
Sbjct: 417 EMAKRVIERIFEL 429


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/526 (39%), Positives = 307/526 (58%), Gaps = 17/526 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNS-LVSEAVSLFGKMREQGVEINSVTMLCLLPICVD 59
           +FD+ +   H    + A+I+GYV       EA+ LF  M    V  N  T    L  C +
Sbjct: 331 IFDQILD--HNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACAN 388

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              L +G       VK G      V N L++MY + G +D  RK FD + EK LI++N +
Sbjct: 389 LAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTV 448

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I  YA+N  +   LEL+ E++  G+   A TF  +LS  A +G    G ++  ++  +G 
Sbjct: 449 IDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGL 508

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             N  + NALI+MY+RCGN++ A  +F+ M  + V+SWT+II G+  HG    A++LF +
Sbjct: 509 KLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHK 568

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           ML+ G+RP+   +++VLSACSH GL ++G ++F  M  ++G+ P  EHY C+VD+LGR+G
Sbjct: 569 MLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSG 628

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
            L+EA++ I SM  + D  VW   LGAC++H N+EL + A   +I+ EP +   Y+LLSN
Sbjct: 629 SLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSN 688

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
           +Y+     D +  +R  M+E+ L K+ G S+VE++ +VH F VGD +H +  EIY   D+
Sbjct: 689 LYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIY---DE 745

Query: 420 LENL---------VQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVM 470
           L+NL         V   D      ++  +E L     HSEK+A+AFG+I+TS    I V 
Sbjct: 746 LQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKL--LFQHSEKIAVAFGLISTSKMKPIRVF 803

Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KNLRICGDCH  IK +S    R+ IVRDA RFHH K G CSC +YW
Sbjct: 804 KNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 168/346 (48%), Gaps = 16/346 (4%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           S+   + ++A++S +  N++   A+  F  M E G   N          C    ++ +G 
Sbjct: 129 SSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGD 188

Query: 68  CCHCICVKFG-LDLDFSVGNCLMTMYVKC-GSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
                 +K G L  D  VG  L+ M+VK  G +    K+F+++PE+  +TW  MI+   Q
Sbjct: 189 SIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQ 248

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
            G A   ++L+ +M   G  PD  T  GV+S+CA++    +G ++  Q   +G   +  +
Sbjct: 249 FGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCV 308

Query: 186 NNALINMYARC---GNLKKARAIFDGMPRKTVVSWTAIIGGYGIH-GHGEVAVQLFDEML 241
              LINMYA+C   G++  AR IFD +    V SWTA+I GY    G+ E A+ LF  M+
Sbjct: 309 GCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMI 368

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC----MVDLLGR 297
            + + P+   F S L AC++      G + F      + ++ G     C    ++ +  R
Sbjct: 369 LTHVIPNHFTFSSTLKACANLAALRIGEQVF-----THAVKLGFSSVNCVANSLISMYAR 423

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
           +G++++A +  + +L E +   +  ++ A   + N E A   F ++
Sbjct: 424 SGRIDDARKAFD-ILFEKNLISYNTVIDAYAKNLNSEEALELFNEI 468



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 3/243 (1%)

Query: 25  NSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSV 84
           N  + +A+S    M  QG   +  T    L  C+      +G   H    +  L LD   
Sbjct: 44  NGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVT 103

Query: 85  GNCLMTMYVKCGSVDYGRKLFDQV-PEKGLITWNAMISGYAQNGLATHVLELYREMKSLG 143
            N L+++Y KCG  +    +F  +   + LI+W+AM+S +A N +    L  + +M   G
Sbjct: 104 LNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENG 163

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF-GSNPFLNNALINMYARC-GNLKK 201
             P+   F     +C+     SVG  +   +   G+  S+  +   LI+M+ +  G+L  
Sbjct: 164 YYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVS 223

Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261
           A  +F+ MP +  V+WT +I      G+   A+ LF +M+ SG  PD      V+SAC++
Sbjct: 224 AFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACAN 283

Query: 262 AGL 264
             L
Sbjct: 284 MEL 286



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 5/203 (2%)

Query: 125 QNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF 184
            NG     +     M   G  PD  T+   L  C    +  +G  V +++  +    +  
Sbjct: 43  NNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSV 102

Query: 185 LNNALINMYARCGNLKKARAIFDGM-PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
             N+LI++Y++CG  +KA +IF  M   + ++SW+A++  +  +  G  A+  F +M+++
Sbjct: 103 TLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIEN 162

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC-MVDLLGRA-GQL 301
           G  P+   F +   ACS A     G +  +G   K G         C ++D+  +  G L
Sbjct: 163 GYYPNEYCFAAATRACSTAEFVSVG-DSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDL 221

Query: 302 NEALELIESMLVEPDGAVWGALL 324
             A ++ E M  E +   W  ++
Sbjct: 222 VSAFKVFEKM-PERNAVTWTLMI 243


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/544 (37%), Positives = 316/544 (58%), Gaps = 41/544 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +N++ISGY       EA+++F KM  E  ++ ++ T+  +L  C +   L +G   H 
Sbjct: 240 VSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHA 299

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGR----------------------------- 102
             ++   +   +VGN L++MY K G V+  R                             
Sbjct: 300 YILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNV 359

Query: 103 ----KLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC 158
               ++F+++ ++ ++ W AMI GY QNGL    LEL+R M + G  P++ T   +LS  
Sbjct: 360 KPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVS 419

Query: 159 AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP--RKTVVS 216
           + L     G ++       G  S P + NALI MYA+ GN+  A+ +FD +P  +K +VS
Sbjct: 420 SSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFD-LPNGKKEIVS 478

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
           WT++I     HG G+ A+ LF+ ML  G++PD   +V VLSAC+H GL ++G +Y+  M 
Sbjct: 479 WTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMT 538

Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELA 336
             + ++P   HY CM+DL GRAG L EA   IESM +EPD   WG+LL +CKIHKN +LA
Sbjct: 539 EVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLA 598

Query: 337 ELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGR 396
           ++A  +++ ++P N+G Y+ L+N+YS     +   + R +M++R ++K+ G S++ +K  
Sbjct: 599 KVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNE 658

Query: 397 VHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQ--KNSEEHLNDT--EVHSEKL 452
           VH F V D  H Q  EIY+++ ++   +++      ++    + EE + +   + HSEKL
Sbjct: 659 VHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKL 718

Query: 453 AIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSC 512
           AIAFG++NT   T + +MKNLR+C DCH  IK +SK+V R+ IVRDATRFHHFK G CSC
Sbjct: 719 AIAFGLLNTPENTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSC 778

Query: 513 KDYW 516
           +DYW
Sbjct: 779 RDYW 782



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 157/383 (40%), Gaps = 66/383 (17%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+I GY    L   A+ +F KM  + V  +  T+  +L  C     L +G   H  
Sbjct: 108 VSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSF 167

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI------------ 120
            VK GL     V   L+ MY KCG     + +FD++  K + TWNA+I            
Sbjct: 168 VVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELA 227

Query: 121 -------------------SGYAQNGLATHVLELYREM-KSLGVCPDAVTFVGVLSSCAH 160
                              SGY+Q G     L ++ +M     + PD  T   +LS+CA+
Sbjct: 228 ASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACAN 287

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC------------------------ 196
           L   ++G ++   I      ++  + NALI+MYA+                         
Sbjct: 288 LEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFT 347

Query: 197 ---------GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
                    GN+K AR IF+ +  + VV+WTA+I GY  +G    A++LF  M+  G  P
Sbjct: 348 SLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEP 407

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           +     ++LS  S   + + G +  +    K G    P     ++ +  + G +N A  +
Sbjct: 408 NSYTLAAMLSVSSSLTILEHGKQ-IHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRV 466

Query: 308 IESMLVEPDGAVWGALLGACKIH 330
            +    + +   W +++ A   H
Sbjct: 467 FDLPNGKKEIVSWTSMIMALAQH 489



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 138/314 (43%), Gaps = 41/314 (13%)

Query: 59  DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
           DP   + G   HC  +K GL L   + N LMT Y K GS+ +   +FD++P K   +WN 
Sbjct: 25  DP---FAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNT 81

Query: 119 MISGYA-------------------------------QNGLATHVLELYREMKSLGVCPD 147
           +ISGYA                               Q GL  + + ++ +M S  V P 
Sbjct: 82  LISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPS 141

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
             T   VLSSCA      +G ++   +   G GS   +  +L+NMYA+CG+   A+ +FD
Sbjct: 142 QFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFD 201

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            M  K + +W A+I  Y   G  E+A   F++M    I     ++ S++S  S  G   +
Sbjct: 202 RMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDI----VSWNSMISGYSQQGYNLE 257

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALL 324
            L  F  M N+  L+P       ++       +LN   ++   +L    E  GAV  AL+
Sbjct: 258 ALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALI 317

Query: 325 GACKIHKNVELAEL 338
                   VE+A L
Sbjct: 318 SMYAKSGGVEIARL 331



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 106/266 (39%), Gaps = 35/266 (13%)

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
           F  +L +   +     G  V  QI   G     +L N L+  YA+ G+L+ A  +FD MP
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72

Query: 211 RKTVVSWTAIIGGYGIHGHGEV-------------------------------AVQLFDE 239
            K+  SW  +I GY   G+ EV                               A+ +F +
Sbjct: 73  LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M+   + P      +VLS+C+     D G +  +    K GL       T ++++  + G
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRK-IHSFVVKLGLGSCVPVATSLLNMYAKCG 191

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
               A  + + M V+ + + W AL+         ELA   F K+   + ++  +  ++S 
Sbjct: 192 DPVIAKVVFDRMTVK-NISTWNALISLYMQSGQFELAASQFEKMPDRDIVS--WNSMISG 248

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKD 385
              +  NL+ +     M+ E  LK D
Sbjct: 249 YSQQGYNLEALAIFSKMLNEPSLKPD 274


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/523 (40%), Positives = 302/523 (57%), Gaps = 11/523 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGK-MREQGVEINSVTMLCLLPICVD 59
           VFD+  +     V +N++I G+  N+L   AV +F   +RE+ V  N V++  +L  C +
Sbjct: 302 VFDQMPERN--LVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACAN 359

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
            G L  G   H + VK+GL     V N LM MY KC   D G KLF  V ++ ++TWN +
Sbjct: 360 MGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVL 419

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           + G+ QN         +  M+  G+ PD  +F  VL S A L A   G  +  QI   G+
Sbjct: 420 VMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGY 479

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             N  +  +LI MYA+CG+L  A  +F+G+    V+SWTA+I  Y +HG     ++LF+ 
Sbjct: 480 VKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEH 539

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           ML  GI P    FV VLSACSH G  ++GL +F  MK  + + PGPEHY CMVDLLGRAG
Sbjct: 540 MLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAG 599

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
            L+EA   IESM ++P  +VWGALLGAC+ + N+++   A  ++ ++EP N G YVLL+N
Sbjct: 600 WLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLAN 659

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRM--- 416
           + + +  L+    VR +M    ++K+PG S++++K    +F   DR+H  + EIY+M   
Sbjct: 660 MCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYKMLEK 719

Query: 417 ---LDKLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
              L K +  V E +      ++N EE       HSEKLA+AFG++     + I + KNL
Sbjct: 720 LEKLVKKKGYVAETEFVTNHLEENEEE--QGLWYHSEKLALAFGLLTLPIDSPIRIKKNL 777

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           R CG CH  +KL SKI DR+ IVRD  RFH F  GFCSC DYW
Sbjct: 778 RTCGHCHTVMKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 820



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 181/396 (45%), Gaps = 36/396 (9%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + +LI+     ++  +A+SLF +MR  G   N  T   +L        +  G   H +
Sbjct: 211 VTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSL 270

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K G D +  VG  L+ MY KC  +    ++FDQ+PE+ L++WN+MI G+  N L    
Sbjct: 271 IHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRA 330

Query: 133 LELYRE-MKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
           + ++++ ++   V P+ V+   VLS+CA++G  + G +V   +   G     ++ N+L++
Sbjct: 331 VGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMD 390

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY +C    +   +F  +  + VV+W  ++ G+  +   E A   F  M + GI PD  +
Sbjct: 391 MYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEAS 450

Query: 252 FVSVLSACS-----HAG--LTDKGLEYFY------------------GMKNKYGLQPGPE 286
           F +VL + +     H G  + D+ ++  Y                   + + Y +  G E
Sbjct: 451 FSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIE 510

Query: 287 -----HYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGACKIHKNVELAEL 338
                 +T M+      G  N+ +EL E ML   +EP    +  +L AC     VE    
Sbjct: 511 DHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLA 570

Query: 339 AFGKVIKLEPMNTG--YYVLLSNIYSEARNLDGIMR 372
            F  + K+  MN G  +Y  + ++   A  LD   R
Sbjct: 571 HFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKR 606



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 128/242 (52%), Gaps = 5/242 (2%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPE--KGLITWNAMISGYAQNGLATHVLELYREMKSLG 143
           N L+ +Y KCG ++    LF       K ++TW ++I+  +   +    L L+ +M+  G
Sbjct: 181 NNLINLYAKCGCLNQALLLFSITHHHFKTIVTWTSLITHLSHFNMHLQALSLFNQMRCSG 240

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
             P+  TF  +LS+ A       G ++   I  +GF +N F+  AL++MYA+C ++  A 
Sbjct: 241 PYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAV 300

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK-SGIRPDGTAFVSVLSACSHA 262
            +FD MP + +VSW ++I G+  +   + AV +F ++L+   + P+  +  SVLSAC++ 
Sbjct: 301 RVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANM 360

Query: 263 GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGA 322
           G  + G +  +G+  KYGL P       ++D+  +    +E ++L +  + + D   W  
Sbjct: 361 GGLNFGRQ-VHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQC-VGDRDVVTWNV 418

Query: 323 LL 324
           L+
Sbjct: 419 LV 420



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 5/204 (2%)

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGI 226
           ++  QI  N + S PFL N LIN+YA+CG L +A  +F       KT+V+WT++I     
Sbjct: 163 QIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHFKTIVTWTSLITHLSH 222

Query: 227 HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPE 286
                 A+ LF++M  SG  P+   F S+LSA +   +   G +  + + +K+G      
Sbjct: 223 FNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHG-QQLHSLIHKHGFDANIF 281

Query: 287 HYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
             T +VD+  +   ++ A+ + + M  E +   W +++     H N+    +   K +  
Sbjct: 282 VGTALVDMYAKCADMHSAVRVFDQM-PERNLVSWNSMIVGF-FHNNLYDRAVGVFKDVLR 339

Query: 347 EPMNTGYYVLLSNIYSEARNLDGI 370
           E       V +S++ S   N+ G+
Sbjct: 340 EKTVIPNEVSVSSVLSACANMGGL 363


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/512 (40%), Positives = 301/512 (58%), Gaps = 11/512 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           VC+ A+I+ Y       +A+ LF KM+E+G   + +T + +       G   + +  H  
Sbjct: 199 VCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGY 258

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            V  G   D SVGN ++ MY KCG+V+  R +FD++ E+  I+WN+M+SGY QNG  T  
Sbjct: 259 AVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDA 318

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+ +M++    P+ VT + ++S+C++LG+  +G ++   + ++    +  L NA+++M
Sbjct: 319 LSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDM 378

Query: 193 YARCGNLKKARAIFDG--MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           Y +CG+L  A  +F+   +  + V SW  +I GYG+HGHG+ A++LF  M   G+ P+  
Sbjct: 379 YMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDI 438

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            F S+LSACSHAGL D+G + F  M  K  ++P  +HY CMVD+LGRAG LNEA  LI+ 
Sbjct: 439 TFTSILSACSHAGLIDEGRKCFADM-TKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKK 497

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           +   P   VWGALL AC+IH N EL E+A   + +LEP +TGYYVL+SNIY+ +     +
Sbjct: 498 IPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEV 557

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD------KLENLV 424
             VR  M+ R LKK   +S +E    VH F   D++     E+YR ++      K+   V
Sbjct: 558 EMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYV 617

Query: 425 QEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
            +        +   +EHL     HSEKLA+AFGI+    G  I V KNLR+C DCH   K
Sbjct: 618 PDLSCVLHDVEPEDKEHL--LNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFK 675

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +S I  R+ IVRD  RFHHF+ G CSC DYW
Sbjct: 676 FISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 707



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 172/347 (49%), Gaps = 6/347 (1%)

Query: 16  NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVK 75
           N ++  Y       EA+ L+  M+  GV +N+ T   +L +C        G   H   V+
Sbjct: 101 NTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVR 160

Query: 76  FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLEL 135
            G   D  V   L+ MY KCG +    ++FD++  + ++ W AMI+ Y Q       L L
Sbjct: 161 TGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALML 220

Query: 136 YREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR 195
           +R+M+  G   D +T + V S+   LG   + + V      NGF  +  + N+++ MYA+
Sbjct: 221 FRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAK 280

Query: 196 CGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSV 255
           CGN+++AR +FD M  +  +SW +++ GY  +G    A+ LF++M  S   P+    + +
Sbjct: 281 CGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIM 340

Query: 256 LSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM-LV 313
           +SACS+ G    G + + + + +K  +     +   ++D+  + G L+ A+E+  +  L 
Sbjct: 341 VSACSYLGSKHLGRKLHNFVISSKMDIDTTLRN--AIMDMYMKCGDLDTAVEMFNNCELG 398

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGK--VIKLEPMNTGYYVLLS 358
           E D + W  L+    +H + + A   F +  V  +EP +  +  +LS
Sbjct: 399 ERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILS 445


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/520 (39%), Positives = 295/520 (56%), Gaps = 6/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD + +S    V +NA+++ Y+ N    E V +F  M E GV  + VT++ ++  C   
Sbjct: 177 VFDAAEESG--VVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRI 234

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G   LG        + GL  +  +   LM MY KCG +   R+LFD +  + ++ W+AMI
Sbjct: 235 GDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMI 294

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGY Q       L L+ EM+   V P+ VT V VLS+CA LGA   G  V   ++     
Sbjct: 295 SGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLS 354

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
               L  AL++ YA+CG +  A   F+ MP K   +WTA+I G   +G G  A++LF  M
Sbjct: 355 LTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSM 414

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            ++GI P    F+ VL ACSH+ L ++G  +F  M   YG++P  EHY CMVDLLGRAG 
Sbjct: 415 REAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGL 474

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           ++EA + I +M +EP+  +W ALL +C +H+NV + E A  ++I L P ++G YVLLSNI
Sbjct: 475 VDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNI 534

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+ A        VR  M++R ++K PG S +EL G V  F   D +H +  EIY+ ++++
Sbjct: 535 YASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGVVFEFFAEDSDHPELREIYQKVEEM 594

Query: 421 ENLVQEHDGTKRSDQKNSEEHLNDTEV----HSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
              ++       +     E    + EV    HSEKLAIAFG++   PG  I + KNLR+C
Sbjct: 595 IGRIKVAGYVPNTADVRLEVEEREKEVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVC 654

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DCH   KL+SK+ DR+ +VRD   FHHFK G CSC DYW
Sbjct: 655 ADCHSATKLISKVYDREIVVRDRNIFHHFKDGTCSCNDYW 694



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 106/315 (33%), Positives = 162/315 (51%), Gaps = 4/315 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKM--REQGVEINSVTMLCLLPICVDPGYLWLGMCC 69
           T CYN L+  ++      +A+ LF +M         +  T  C L  C     L +G   
Sbjct: 83  TPCYNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGV 142

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
               VK GL  D  V + L+ MY  CG V   R +FD   E G++ WNA+++ Y +NG  
Sbjct: 143 QAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDW 202

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
             V+E+++ M  +GV  D VT V V+++C  +G   +G  V   +   G   NP L  AL
Sbjct: 203 MEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTAL 262

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++MYA+CG + KAR +FDGM  + VV+W+A+I GY        A+ LF EM  + + P+ 
Sbjct: 263 MDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPND 322

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
              VSVLSAC+  G  + G ++ +    +  L       T +VD   + G +++A+E  E
Sbjct: 323 VTMVSVLSACAVLGALETG-KWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFE 381

Query: 310 SMLVEPDGAVWGALL 324
           SM V+ +   W AL+
Sbjct: 382 SMPVK-NSWTWTALI 395


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/515 (40%), Positives = 301/515 (58%), Gaps = 13/515 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE    T   V + ALI+G+  N+   +A+ LF +M   G + N  T+  LL      
Sbjct: 145 MFDE--MPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSE 202

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H  C+K+G      VG+ L+ MY +CG +D  +  FD +P K  ++WNA+I
Sbjct: 203 HGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALI 262

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SG+A+ G   H L L  +M+     P   T+  VLS+CA +GA   G  V   +  +G  
Sbjct: 263 SGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLK 322

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
              F+ N L++MYA+ G++  A+ +FD + +  VVSW  ++ G   HG G+  +  F++M
Sbjct: 323 LIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQM 382

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           L+ GI P+  +F+ VL+ACSH+GL D+GL YF  MK KY ++P   HY   VDLLGR G 
Sbjct: 383 LRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMK-KYKVEPDVPHYVTFVDLLGRVGL 441

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L+ A   I  M +EP  AVWGALLGAC++HKN+EL   A  +  +L+P ++G  +LLSNI
Sbjct: 442 LDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNI 501

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+ A     + +VR MM+E  +KK P  S+VE++  VHLF+  D  H +  EI    +++
Sbjct: 502 YASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPRIKEIRGKWEEI 561

Query: 421 ENLVQEHDGTKRS-------DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
              ++E      +       DQ+  EE L   + HSEKLA+AF ++NT  G+ I + KN+
Sbjct: 562 SGKIKEIGYVPDTSHVLLFVDQQEREEKL---QYHSEKLALAFALLNTPTGSPIRIKKNI 618

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSG 508
           R+CGDCH  IK VSK+VDR+ IVRD  RFH F+ G
Sbjct: 619 RVCGDCHAAIKFVSKVVDREIIVRDTNRFHRFRDG 653



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/362 (31%), Positives = 190/362 (52%), Gaps = 16/362 (4%)

Query: 53  LLPICVDPGYLWLGMCCHCICV-KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK 111
           LL  C   G +  G   H   V    LD    + N ++ MY KCG +D  R++FD++P K
Sbjct: 93  LLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTK 152

Query: 112 GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVE 171
            ++TW A+I+G++QN      L L+ +M  LG  P+  T    LSS         GL+  
Sbjct: 153 DMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFT----LSSLLKASGSEHGLDPG 208

Query: 172 QQIQA----NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH 227
            Q+ A     G+ S+ ++ +AL++MYARCG++  A+  FDGMP K+ VSW A+I G+   
Sbjct: 209 TQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARK 268

Query: 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH 287
           G GE A+ L  +M +   +P    + SVLSAC+  G  ++G ++ +    K GL+     
Sbjct: 269 GEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQG-KWVHAHMIKSGLKLIAFI 327

Query: 288 YTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK-- 345
              ++D+  +AG +++A  + +  LV+PD   W  +L  C  H   +     F ++++  
Sbjct: 328 GNTLLDMYAKAGSIDDAKRVFDR-LVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIG 386

Query: 346 LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKD-PGY-SYVELKGRVHLFMVG 403
           +EP    +  +L+   S +  LD  +    +M++ +++ D P Y ++V+L GRV L    
Sbjct: 387 IEPNEISFLCVLTAC-SHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRA 445

Query: 404 DR 405
           +R
Sbjct: 446 ER 447


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/435 (43%), Positives = 275/435 (63%), Gaps = 4/435 (0%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N ++    K G++   RKLFD++ E+  I+W++M+ GY   G     LE++++M+     
Sbjct: 232 NVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETR 291

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P       VL++C+++GA   G  V   ++ N    +  L  AL++MYA+CG L     +
Sbjct: 292 PGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEV 351

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           F+ M  + + +W A+IGG  IHG  E A++LF ++ +  ++P+G   V VL+AC+HAG  
Sbjct: 352 FEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFV 411

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           DKGL  F  M+  YG+ P  EHY CMVDLLGR+G  +EA +LI SM ++P+ AVWGALLG
Sbjct: 412 DKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLG 471

Query: 326 ACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKD 385
           AC+IH N +LAE     +++LEP N+G YVLLSNIY++    D + ++R +M++R +K  
Sbjct: 472 ACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTV 531

Query: 386 PGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQK----NSEEH 441
           PG S V+L G VH F +GD +H Q  EIYR L  ++  +Q    +  + Q     + EE 
Sbjct: 532 PGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEK 591

Query: 442 LNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATR 501
                 HSEKLAIAFG+INT PG  I ++KNLR+C DCH   KL+S+I DR+ IVRD  R
Sbjct: 592 ETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVR 651

Query: 502 FHHFKSGFCSCKDYW 516
           +HHFK+G CSCKD+W
Sbjct: 652 YHHFKNGTCSCKDFW 666



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 127/236 (53%), Gaps = 6/236 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE   S    + +++++ GY+      EA+ +F +M+ +        +  +L  C + 
Sbjct: 250 LFDEM--SERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNI 307

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G +  G   H    +  + LD  +G  L+ MY KCG +D G ++F+++ E+ + TWNAMI
Sbjct: 308 GAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMI 367

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            G A +G A   LEL+ +++   + P+ +T VGVL++CAH G    GL + Q ++   +G
Sbjct: 368 GGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMR-EFYG 426

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMPRK-TVVSWTAIIGGYGIHGHGEVA 233
            +P L +   ++++  R G   +A  + + MP K     W A++G   IHG+ ++A
Sbjct: 427 VDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLA 482



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/400 (22%), Positives = 161/400 (40%), Gaps = 74/400 (18%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKC--GSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
           H + ++ G   D  V   L+  Y      + D+  K+F  +P   +  WN +I G  +N 
Sbjct: 53  HGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENN 112

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
                +  Y  M  +   P+  T+  +  +C+   A   G ++   +  +G GS+  + +
Sbjct: 113 KLFKAIYFYGRM-VIDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKS 171

Query: 188 ALINMYAR------------------------------CGNLKKARAIFDGMPRKTV--- 214
           A I+MYA                               CG L+ A+ +F  MP K +   
Sbjct: 172 AGIHMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSW 231

Query: 215 ----------------------------VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
                                       +SW++++ GY   G  + A+++F +M +   R
Sbjct: 232 NVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETR 291

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           P      SVL+ACS+ G  D+G  + +    +  ++      T ++D+  + G+L+   E
Sbjct: 292 PGRFILSSVLAACSNIGAIDQG-RWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWE 350

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI--KLEPMNTGYYVLLSNIYSEA 364
           + E M  E +   W A++G   IH   E A   F K+   +++P       +L+   + A
Sbjct: 351 VFEEM-KEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTAC-AHA 408

Query: 365 RNLDGIMRVRMMMRERRLKKDPGYSY----VELKGRVHLF 400
             +D  +R+   MRE     DP   +    V+L GR  LF
Sbjct: 409 GFVDKGLRIFQTMRE-FYGVDPELEHYGCMVDLLGRSGLF 447


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/510 (38%), Positives = 299/510 (58%), Gaps = 7/510 (1%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
              +NA++ GY+ ++   +A+  F  M E G+ I+ +T+   +        L  G      
Sbjct: 1065 ASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAY 1124

Query: 73   CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             +K G + D  V + ++ MY+KCG +    +LF ++     + W  MISGY +NG   H 
Sbjct: 1125 AIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHA 1184

Query: 133  LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            L +Y  M+  GV PD  TF  ++ + + L A   G ++   +    +  + F+  +L++M
Sbjct: 1185 LSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDM 1244

Query: 193  YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
            Y +CG+++ A  +F  M  + VV W A++ G   HGH + A+ LF  M  +GI+PD   F
Sbjct: 1245 YCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTF 1304

Query: 253  VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            + VLSACSH+GL  +  +YF  M   YG+ P  EHY+C+VD LGRAG++ EA  +I SM 
Sbjct: 1305 IGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMP 1364

Query: 313  VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
             +   +++ ALLGAC+   + E A+    K++ L+P ++  YVLLSNIY+ +R  D +  
Sbjct: 1365 FKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTD 1424

Query: 373  VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
             R MM+ + +KKDPG+S++++K +VHLF+V DR+H Q   IY  ++ L   ++E +G+  
Sbjct: 1425 ARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIRE-EGSYV 1483

Query: 433  SDQK------NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
             D          EE       HSEKLAIAFG+I+T P   I V+KNLR+CGDCH  IK +
Sbjct: 1484 PDTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCI 1543

Query: 487  SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            SK+  R+ ++RDA RFHHF++G CSC DYW
Sbjct: 1544 SKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 161/333 (48%), Gaps = 17/333 (5%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICV--DPG-YLWLGMCC 69
            + +N +IS Y  N+L  EA+  F  +   G++ +  T+  +L  C   D G Y  LG   
Sbjct: 961  ISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQV 1020

Query: 70   HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
            H   +K G+  D  V   L+ +Y K G +D    L     +  L +WNA++ GY ++  +
Sbjct: 1021 HVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKS 1080

Query: 130  THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN----GFGSNPFL 185
               LE +  M  +G+  D +T    + +   L    + L+  +QIQA     GF ++ ++
Sbjct: 1081 RKALEHFSLMHEMGIPIDEITLATAIKASGCL----INLKQGKQIQAYAIKLGFNNDLWV 1136

Query: 186  NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
            ++ +++MY +CG++  A  +F  + R   V+WT +I GY  +G  + A+ ++  M  SG+
Sbjct: 1137 SSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGV 1196

Query: 246  RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY--TCMVDLLGRAGQLNE 303
            +PD   F +++ A S     ++G +      N   L    +H+  T +VD+  + G + +
Sbjct: 1197 QPDEYTFATLIKASSCLTALEQGKQIH---ANVVKLDYSLDHFVGTSLVDMYCKCGSVQD 1253

Query: 304  ALELIESMLVEPDGAVWGALLGACKIHKNVELA 336
            A  +   M V      W A+L     H +V+ A
Sbjct: 1254 AYRVFRKMDVRK-VVFWNAMLLGLAQHGHVDEA 1285



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 139/319 (43%), Gaps = 15/319 (4%)

Query: 14   CYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
             +N  ++ ++    +  A+  F  +    +  +SVT++ +L   V    L LG   H + 
Sbjct: 861  AWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALV 920

Query: 74   VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
            +K        V N LM MY K G V    K F   PE  LI+WN MIS YAQN L    +
Sbjct: 921  IKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAI 980

Query: 134  ELYREMKSLGVCPDAVTFVGVLSSCA--HLGAH-SVGLEVEQQIQANGFGSNPFLNNALI 190
              +R++   G+ PD  T   VL +C+    G + ++G +V       G  ++ F++ ALI
Sbjct: 981  CTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALI 1040

Query: 191  NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
            ++Y++ G + +A  +  G     + SW AI+ GY        A++ F  M + GI  D  
Sbjct: 1041 DLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEI 1100

Query: 251  AFVSVLSACS-----HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
               + + A         G   +      G  N   +  G      ++D+  + G +  AL
Sbjct: 1101 TLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSG------VLDMYIKCGDMPNAL 1154

Query: 306  ELIESMLVEPDGAVWGALL 324
            EL    +  PD   W  ++
Sbjct: 1155 ELF-GEISRPDEVAWTTMI 1172



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 98/191 (51%), Gaps = 5/191 (2%)

Query: 63  LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISG 122
           L LG   H   V  G   D  + N L+TMY KCGS+   R++FD+  ++ L+TWN++++ 
Sbjct: 627 LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 123 YAQNGLATH--VLELYR---EMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
           YAQ   +++  VLE +R    ++  G     +T   +L  C   G   V   V       
Sbjct: 687 YAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKI 746

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
           GF  + F++ AL+N+Y + G + +AR +FD MP +  V W  ++  Y  +   + A++ F
Sbjct: 747 GFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFF 806

Query: 238 DEMLKSGIRPD 248
               +SG  PD
Sbjct: 807 SAFHRSGFFPD 817



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 139/335 (41%), Gaps = 41/335 (12%)

Query: 12   TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
             V +N ++  YV NS   EA+  F      G                     +     + 
Sbjct: 783  AVLWNVMLKAYVENSFQDEALRFFSAFHRSG---------------------FFPDFSNL 821

Query: 72   ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             CV  G++ D S         VK     Y  K+F       +  WN  ++ +   G    
Sbjct: 822  HCVIGGVNSDVSNNRKRHAEQVKA----YAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVA 877

Query: 132  VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
             ++ ++ +    +  D+VT V +LS+        +G ++   +  + F     ++N+L+N
Sbjct: 878  AIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMN 937

Query: 192  MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
            MY++ G +  A   F   P   ++SW  +I  Y  +     A+  F ++L+ G++PD   
Sbjct: 938  MYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFT 997

Query: 252  FVSVLSACSHAGLTDKGLEYF--------YGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
              SVL ACS     D+G EYF        Y +  K G+       T ++DL  + G+++E
Sbjct: 998  LASVLRACSTG---DEG-EYFTLGSQVHVYAI--KCGIINDSFVSTALIDLYSKGGKMDE 1051

Query: 304  ALELIESMLVEPDGAVWGALL-GACKIHKNVELAE 337
            A E +     + D A W A++ G  K +K+ +  E
Sbjct: 1052 A-EFLLHGKYDFDLASWNAIMFGYIKSNKSRKALE 1085



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 124/304 (40%), Gaps = 33/304 (10%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVS-----EAVSLFGKMREQGVEINSVTMLCLLP 55
           VFD+S  S    V +N++++ Y   +  S     E   LFG +RE G  I  +T+  LL 
Sbjct: 668 VFDKS--SDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLK 725

Query: 56  ICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT 115
           +C+  G++ +    H   VK G +LD  V   L+ +Y K G V   R LFD++PE+  + 
Sbjct: 726 LCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVL 785

Query: 116 WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175
           WN M+  Y +N      L  +      G  PD      V+       +++     E Q++
Sbjct: 786 WNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCVIGGVNSDVSNNRKRHAE-QVK 844

Query: 176 ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQ 235
           A      PF   +  N++A                      W   +  +   G    A+ 
Sbjct: 845 AYAMKMFPFDQGS--NIFA----------------------WNKKLTEFLHAGQIVAAID 880

Query: 236 LFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295
            F  +L+S I  D    V +LSA   A   D G E  + +  K    P       ++++ 
Sbjct: 881 CFKTLLRSTIGHDSVTLVIILSAAVGADDLDLG-EQIHALVIKSSFAPVVPVSNSLMNMY 939

Query: 296 GRAG 299
            +AG
Sbjct: 940 SKAG 943


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/508 (40%), Positives = 292/508 (57%), Gaps = 43/508 (8%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           +C+NA+I GY+    V  A  LF  M ++ V                             
Sbjct: 197 ICFNAMIDGYLKCGEVEAAKELFWSMEDKNV----------------------------- 227

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
                        N +++   KCG ++  R+LF+++ EK  I+W+AMI GY + G     
Sbjct: 228 ----------GSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEA 277

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           LE++  M+   + P       VL++CA+LGA   G  +   +  N    +  L  AL++M
Sbjct: 278 LEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDM 337

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG L  A  +F+ M +K V +W A+I G G+HG  E A++LF +M K   RP+G   
Sbjct: 338 YAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITL 397

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + VLSAC+H+G+ D+GL  F  M+  YG++PG EHY C+VDLLGRAG L EA E++ SM 
Sbjct: 398 LGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMP 457

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           +EP  AVWGALLGAC+ H +VEL E     +++LEP N+G Y LLSNIY+ A   D +  
Sbjct: 458 MEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVAN 517

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR +M+ER +K   G S ++  G VH F +GD +H Q   IY ML  +   ++    +  
Sbjct: 518 VRKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSHPQMKNIYLMLKNMIKRLKMEGFSPN 577

Query: 433 SDQK----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
           + Q       EE   + + HSEKLAIAFG+INT PGT I V+KNLR+C DCH   KL+S+
Sbjct: 578 TSQVLFDIEEEEKEAELQYHSEKLAIAFGLINTKPGTTIHVVKNLRMCEDCHSAFKLISQ 637

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           + DR+ IVRD  R+HHFK+G CSCKD+W
Sbjct: 638 VYDREIIVRDRARYHHFKTGTCSCKDFW 665



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 111/263 (42%), Gaps = 14/263 (5%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVK--CGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
           H + ++ G   D  V   L+  Y      ++++  K+F+ VP   +  +N +I G  QN 
Sbjct: 50  HAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCLQNN 109

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
                +  Y +M      P+  T+  +  +C    A   G++V   +   G   +  + +
Sbjct: 110 EPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRS 169

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           A I MY   G ++ AR +        V+ + A+I GY   G  E A +LF  M    +  
Sbjct: 170 AGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNV-G 228

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
                VS ++ C   G+ ++  E F  MK K  +      ++ M+D   + G   EALE+
Sbjct: 229 SWNVMVSGMAKC---GMIEEARELFNEMKEKNEIS-----WSAMIDGYIKGGYYKEALEV 280

Query: 308 IESMLVE---PDGAVWGALLGAC 327
              M  E   P   V  ++L AC
Sbjct: 281 FNVMQREEIRPRKFVLSSVLAAC 303


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/510 (38%), Positives = 299/510 (58%), Gaps = 7/510 (1%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
              +NA++ GY+ ++   +A+  F  M E G+ I+ +T+   +        L  G      
Sbjct: 1065 ASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAY 1124

Query: 73   CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             +K G + D  V + ++ MY+KCG +    +LF ++     + W  MISGY +NG   H 
Sbjct: 1125 AIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHA 1184

Query: 133  LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            L +Y  M+  GV PD  TF  ++ + + L A   G ++   +    +  + F+  +L++M
Sbjct: 1185 LSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDM 1244

Query: 193  YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
            Y +CG+++ A  +F  M  + VV W A++ G   HGH + A+ LF  M  +GI+PD   F
Sbjct: 1245 YCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTF 1304

Query: 253  VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            + VLSACSH+GL  +  +YF  M   YG+ P  EHY+C+VD LGRAG++ EA  +I SM 
Sbjct: 1305 IGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMP 1364

Query: 313  VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
             +   +++ ALLGAC+   + E A+    K++ L+P ++  YVLLSNIY+ +R  D +  
Sbjct: 1365 FKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTD 1424

Query: 373  VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
             R MM+ + +KKDPG+S++++K +VHLF+V DR+H Q   IY  ++ L   ++E +G+  
Sbjct: 1425 ARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIRE-EGSYV 1483

Query: 433  SDQK------NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
             D          EE       HSEKLAIAFG+I+T P   I V+KNLR+CGDCH  IK +
Sbjct: 1484 PDTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCI 1543

Query: 487  SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            SK+  R+ ++RDA RFHHF++G CSC DYW
Sbjct: 1544 SKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 163/334 (48%), Gaps = 19/334 (5%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICV--DPG-YLWLGMCC 69
            + +N +IS Y  N+L  EA+  F  +   G++ +  T+  +L  C   D G Y  LG   
Sbjct: 961  ISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQV 1020

Query: 70   HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
            H   +K G+  D  V   L+ +Y K G +D    L     +  L +WNA++ GY ++  +
Sbjct: 1021 HVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKS 1080

Query: 130  THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN----GFGSNPFL 185
               LE +  M  +G+  D +T    + +   L    + L+  +QIQA     GF ++ ++
Sbjct: 1081 RKALEHFSLMHEMGIPIDEITLATAIKASGCL----INLKQGKQIQAYAIKLGFNNDLWV 1136

Query: 186  NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
            ++ +++MY +CG++  A  +F  + R   V+WT +I GY  +G  + A+ ++  M  SG+
Sbjct: 1137 SSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGV 1196

Query: 246  RPDGTAFVSVLSACSHAGLTDKGLEYFYG-MKNKYGLQPGPEHY--TCMVDLLGRAGQLN 302
            +PD   F +++ A S     ++G +     +K  Y L    +H+  T +VD+  + G + 
Sbjct: 1197 QPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSL----DHFVGTSLVDMYCKCGSVQ 1252

Query: 303  EALELIESMLVEPDGAVWGALLGACKIHKNVELA 336
            +A  +   M V      W A+L     H +V+ A
Sbjct: 1253 DAYRVFRKMDVRK-VVFWNAMLLGLAQHGHVDEA 1285



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 139/319 (43%), Gaps = 15/319 (4%)

Query: 14   CYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
             +N  ++ ++    +  A+  F  +    +  +SVT++ +L   V    L LG   H + 
Sbjct: 861  AWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALV 920

Query: 74   VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
            +K        V N LM MY K G V    K F   PE  LI+WN MIS YAQN L    +
Sbjct: 921  IKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAI 980

Query: 134  ELYREMKSLGVCPDAVTFVGVLSSCA--HLGAH-SVGLEVEQQIQANGFGSNPFLNNALI 190
              +R++   G+ PD  T   VL +C+    G + ++G +V       G  ++ F++ ALI
Sbjct: 981  CTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALI 1040

Query: 191  NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
            ++Y++ G + +A  +  G     + SW AI+ GY        A++ F  M + GI  D  
Sbjct: 1041 DLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEI 1100

Query: 251  AFVSVLSACS-----HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
               + + A         G   +      G  N   +  G      ++D+  + G +  AL
Sbjct: 1101 TLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSG------VLDMYIKCGDMPNAL 1154

Query: 306  ELIESMLVEPDGAVWGALL 324
            EL    +  PD   W  ++
Sbjct: 1155 ELF-GEISRPDEVAWTTMI 1172



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 98/191 (51%), Gaps = 5/191 (2%)

Query: 63  LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISG 122
           L LG   H   V  G   D  + N L+TMY KCGS+   R++FD+  ++ L+TWN++++ 
Sbjct: 627 LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 123 YAQNGLATH--VLELYR---EMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
           YAQ   +++  VLE +R    ++  G     +T   +L  C   G   V   V       
Sbjct: 687 YAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKI 746

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
           GF  + F++ AL+N+Y + G + +AR +FD MP +  V W  ++  Y  +   + A++ F
Sbjct: 747 GFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFF 806

Query: 238 DEMLKSGIRPD 248
               +SG  PD
Sbjct: 807 SAFHRSGFXPD 817



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 140/335 (41%), Gaps = 41/335 (12%)

Query: 12   TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
             V +N ++  YV NS   EA+  F      G   +   + C++                 
Sbjct: 783  AVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVIG---------------- 826

Query: 72   ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                 G++ D S         VK     Y  K+F       +  WN  ++ +   G    
Sbjct: 827  -----GVNSDVSNNRKRHAEQVKA----YAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVA 877

Query: 132  VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
             ++ ++ +    +  D+VT V +LS+        +G ++   +  + F     ++N+L+N
Sbjct: 878  AIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMN 937

Query: 192  MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
            MY++ G +  A   F   P   ++SW  +I  Y  +     A+  F ++L+ G++PD   
Sbjct: 938  MYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFT 997

Query: 252  FVSVLSACSHAGLTDKGLEYF--------YGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
              SVL ACS     D+G EYF        Y +  K G+       T ++DL  + G+++E
Sbjct: 998  LASVLRACSTG---DEG-EYFTLGSQVHVYAI--KCGIINDSFVSTALIDLYSKGGKMDE 1051

Query: 304  ALELIESMLVEPDGAVWGALL-GACKIHKNVELAE 337
            A E +     + D A W A++ G  K +K+ +  E
Sbjct: 1052 A-EFLLHGKYDFDLASWNAIMFGYIKSNKSRKALE 1085



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 124/304 (40%), Gaps = 33/304 (10%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVS-----EAVSLFGKMREQGVEINSVTMLCLLP 55
           VFD+S  S    V +N++++ Y   +  S     E   LFG +RE G  I  +T+  LL 
Sbjct: 668 VFDKS--SDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLK 725

Query: 56  ICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT 115
           +C+  G++ +    H   VK G +LD  V   L+ +Y K G V   R LFD++PE+  + 
Sbjct: 726 LCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVL 785

Query: 116 WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175
           WN M+  Y +N      L  +      G  PD      V+       +++     E Q++
Sbjct: 786 WNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVIGGVNSDVSNNRKRHAE-QVK 844

Query: 176 ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQ 235
           A      PF   +  N++A                      W   +  +   G    A+ 
Sbjct: 845 AYAMKMFPFDQGS--NIFA----------------------WNKKLTEFLHAGQIVAAID 880

Query: 236 LFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295
            F  +L+S I  D    V +LSA   A   D G E  + +  K    P       ++++ 
Sbjct: 881 CFKTLLRSTIGHDSVTLVIILSAAVGADDLDLG-EQIHALVIKSSFAPVVPVSNSLMNMY 939

Query: 296 GRAG 299
            +AG
Sbjct: 940 SKAG 943


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/522 (40%), Positives = 308/522 (59%), Gaps = 17/522 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  K     V + A++SGY  N  V  A  LF  M E+  E++   ML         
Sbjct: 201 LFDEMPKRN--VVTWTAMVSGYARNGKVDVARKLFEVMPERN-EVSWTAMLL-------- 249

Query: 61  GYLWLGMCCHCICVKFGLDLD-FSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
           GY   G       +   + +    V N ++  +   G VD  R++F  + E+   TW+AM
Sbjct: 250 GYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAM 309

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I  Y + G     L L+R M+  G+  +  + + VLS C  L +   G +V  Q+  + F
Sbjct: 310 IKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEF 369

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             + ++ + LI MY +CGNL +A+ +F+  P K VV W ++I GY  HG GE A+ +F +
Sbjct: 370 DQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHD 429

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M  SG+ PD   F+ VLSACS++G   +GLE F  MK KY ++PG EHY C+VDLLGRA 
Sbjct: 430 MCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRAD 489

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
           Q+NEA++L+E M +EPD  VWGALLGAC+ H  ++LAE+A  K+ +LEP N G YVLLSN
Sbjct: 490 QVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSN 549

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGD-RNHHQTVEIYRMLD 418
           +Y+       +  +R  ++ R + K PG S++E++ +VH+F  GD + H +   I +ML+
Sbjct: 550 MYAYKGRWRDVEVLREKIKARSVTKLPGCSWIEVEKKVHMFTGGDSKGHPEQPIIMKMLE 609

Query: 419 KLENLVQE----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLR 474
           KL  L++E     DG+      + EE  +    HSEKLA+A+G++    G  I VMKNLR
Sbjct: 610 KLGGLLREAGYCPDGSFVLHDVDEEEKTHSLGYHSEKLAVAYGLLKVPEGMPIRVMKNLR 669

Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +CGDCH  IKL++K+  R+ I+RDA RFHHFK G CSCKDYW
Sbjct: 670 VCGDCHSAIKLIAKVTGREIILRDANRFHHFKDGHCSCKDYW 711



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 157/361 (43%), Gaps = 64/361 (17%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE+         +NA+++ Y       EA+ LF KM ++    N+V+           
Sbjct: 44  VFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQR----NTVS----------- 88

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
              W                     N L++ ++K G +   R++FD +P++ +++W +M+
Sbjct: 89  ---W---------------------NGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMV 124

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSV-GLEVEQQIQANGF 179
            GY +NG       L+  M    V    V   G+L       A  +  +  E+ + A   
Sbjct: 125 RGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVA--- 181

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
                + N +I  Y   G L +ARA+FD MP++ VV+WTA++ GY  +G  +VA +LF+ 
Sbjct: 182 -----VTN-MIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEV 235

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC--MVDLLGR 297
           M +     +  ++ ++L   +H+G   +    F  M       P      C  M+   G 
Sbjct: 236 MPER----NEVSWTAMLLGYTHSGRMREASSLFDAM-------PVKPVVVCNEMIMGFGL 284

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
            G++++A  + + M  E D   W A++   +  K  EL  L   + ++ E +   +  L+
Sbjct: 285 NGEVDKARRVFKGM-KERDNGTWSAMIKVYE-RKGYELEALGLFRRMQREGLALNFPSLI 342

Query: 358 S 358
           S
Sbjct: 343 S 343



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 110/239 (46%), Gaps = 28/239 (11%)

Query: 92  YVKCGSVDYGRKLFDQ--VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
           Y + G +D+ RK+FD+  +P + + +WNAM++ Y +       L L+ +M       + V
Sbjct: 32  YARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQR----NTV 87

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN----NALINMYARCGNLKKARAI 205
           ++ G++S     G  S    V        F + P  N     +++  Y R G++ +A  +
Sbjct: 88  SWNGLISGHIKNGMLSEARRV--------FDTMPDRNVVSWTSMVRGYVRNGDVAEAERL 139

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           F  MP K VVSWT ++GG    G  + A +LFD M +     D  A  +++      G  
Sbjct: 140 FWHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEK----DVVAVTNMIGGYCEEGRL 195

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
           D+    F  M  +  +      +T MV    R G+++ A +L E M  E +   W A+L
Sbjct: 196 DEARALFDEMPKRNVVT-----WTAMVSGYARNGKVDVARKLFEVM-PERNEVSWTAML 248


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/526 (40%), Positives = 308/526 (58%), Gaps = 18/526 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+ +      V +  +I G +      EAV LF  + E G+  +   ++ +L  C   
Sbjct: 161 VFDDMVVKN--VVSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARL 218

Query: 61  GYL----WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
           G L    W+  C      + GL  +  V   L+ MY KCGS++  R +FD + EK ++ W
Sbjct: 219 GDLESGRWIDRCMR----ECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCW 274

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
           +AMI GYA NGL    +EL+ EM+ + V PD    VG LSSCA LGA  +G   +  +  
Sbjct: 275 SAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNY 334

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
             F SNP L  +LI+ YA+CG++++A  ++  M  K  V + A+I G  ++G    A  +
Sbjct: 335 EEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGV 394

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           F +M K GI P+   FV +L  C+HAGL D G  YF  M + + + P  EHY CMVDLL 
Sbjct: 395 FGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLLA 454

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356
           RAG L+EA  LI+ M ++ +  VWG+LLG C++H+  +LAE    ++I+LEP N+G+YVL
Sbjct: 455 RAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQLAEHVLKQLIELEPWNSGHYVL 514

Query: 357 LSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRM 416
           LSNIYS +R  D   ++R  + E+ ++K PGYS+VE+ G VH F+VGD +H  + +IY  
Sbjct: 515 LSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVDGVVHEFLVGDTSHPLSQKIYEK 574

Query: 417 LDKLENLVQEHDGTKRSD------QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVM 470
           L+ L   ++E      ++      ++  +EH      HSEKLA+AF +I+T     I V+
Sbjct: 575 LESLFKDLKEAGYNPTTEFVLFDVEEEEKEHF--LGCHSEKLAVAFALISTGAKYVIRVV 632

Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KNLR+CGDCH  IK +SK+  R+ ++RD  RFH F  G CSC+DYW
Sbjct: 633 KNLRVCGDCHEAIKHISKVTGREIVIRDNNRFHCFSDGACSCRDYW 678



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 173/345 (50%), Gaps = 3/345 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T  YN +I G V     + AV L+  M +  +  +S T   +L  C       LG+  H 
Sbjct: 69  TFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHS 128

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           +  K G D D  V   ++  Y KCG +    K+FD +  K +++W  MI G  + G    
Sbjct: 129 LVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFRE 188

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            ++L+R +   G+ PD    V VL +CA LG    G  +++ ++  G   N F+  +L++
Sbjct: 189 AVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVD 248

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY +CG++++AR +FDGM  K +V W+A+I GY  +G    A++LF EM K  +RPD  A
Sbjct: 249 MYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYA 308

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            V  LS+C+  G  + G  +  G+ N       P   T ++D   + G + EAL  +  M
Sbjct: 309 MVGALSSCASLGALELG-NWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALG-VYKM 366

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE-PMNTGYYV 355
           + E D  V+ A++    ++  V  A   FG++ K   P N   +V
Sbjct: 367 MKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFV 411


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/557 (38%), Positives = 314/557 (56%), Gaps = 43/557 (7%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPIC--- 57
           +FDES+      V YN +I GY   +    A+ LFG+M+  G+  +  T + L  +C   
Sbjct: 168 LFDESL--VRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVL 225

Query: 58  -------------------VDPGYLW----LGMCCHC--------ICVKFGLDLDFSVGN 86
                              +D   L     + M   C        +    G     +  +
Sbjct: 226 NEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWS 285

Query: 87  CLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCP 146
            ++  Y +CG ++  RKLF+ + E+ +I+W AMISGY+Q G  +  LEL++EM++LG+ P
Sbjct: 286 SMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKP 345

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG-FGSNPFLNNALINMYARCGNLKKARAI 205
           D VT V VLS+CA LGA  +G  +  Q   NG F  N  L  A+++MYA+CG++  A  I
Sbjct: 346 DEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEI 405

Query: 206 FD--GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG 263
           F   G   KT   + ++I G   HG GE A+ +F E++ +G++PD   FV VL AC H+G
Sbjct: 406 FRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSG 465

Query: 264 LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGAL 323
           L ++G + F  M N YG++P  EHY CMVDLLGR G L EA +L++ M  E +  +W AL
Sbjct: 466 LIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRAL 525

Query: 324 LGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLK 383
           L AC+ H NV++ E+A  K++++E  +   YVLLSNI ++A   +   +VR +M +  ++
Sbjct: 526 LSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIR 585

Query: 384 KDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQK----NSE 439
           K PG+SY+EL G +H F+  D++H Q  EI  ML  +   ++       + Q     + E
Sbjct: 586 KPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEE 645

Query: 440 EHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDA 499
           E  +    HSEKLA+AFG++  SP   I ++KNLRIC DCH   KLVS+I  R+  VRD 
Sbjct: 646 EKESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDT 705

Query: 500 TRFHHFKSGFCSCKDYW 516
            RFHHF++G CSC D+W
Sbjct: 706 MRFHHFRNGSCSCMDFW 722



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 108/372 (29%), Positives = 171/372 (45%), Gaps = 38/372 (10%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGV-EINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +N +I GY  +    EA+ L+  M  +G+   N+ T   LL  C     L  G   H   
Sbjct: 78  WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 137

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           +K G + D  V N L+ +Y   G+++  R LFD+   + L+++N MI GYA+       L
Sbjct: 138 IKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESAL 197

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN--GFGSNPFLNNALIN 191
            L+ EM++ G+ PD  TFV + S C+ L   +VG ++  Q+  N     SN  L +A+++
Sbjct: 198 CLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVD 257

Query: 192 M--------------------------------YARCGNLKKARAIFDGMPRKTVVSWTA 219
           M                                YARCG +  AR +F+ M  + V+SWTA
Sbjct: 258 MYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTA 317

Query: 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279
           +I GY   G    A++LF EM   GI+PD    V+VLSAC+  G  D G   ++      
Sbjct: 318 MISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENG 377

Query: 280 GLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE-PDGAVWGALLGACKIHKNVELAEL 338
                      ++D+  + G ++ ALE+   +      G V+ +++     H   E A  
Sbjct: 378 VFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAIT 437

Query: 339 AFGKVIK--LEP 348
            F ++I   L+P
Sbjct: 438 VFRELISTGLKP 449



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 108/374 (28%), Positives = 166/374 (44%), Gaps = 23/374 (6%)

Query: 51  LCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS---VDYGRKLFDQ 107
           LCLL  C        G+  H   +  GL       + L++ +   GS   +D+ R LF Q
Sbjct: 13  LCLLESCKS---FKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQ 69

Query: 108 VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCP-DAVTFVGVLSSCAHLGAHSV 166
           +    L  WN MI GY+++      + LY  M + G+ P +  TF  +L+SCA L +   
Sbjct: 70  IDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEP 129

Query: 167 GLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGI 226
           G EV   I  +GF S+ F+ NALI++Y+  GNL  AR +FD    + +VS+  +I GY  
Sbjct: 130 GHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAE 189

Query: 227 HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM-KNKYGLQPGP 285
               E A+ LF EM  SGI PD   FV++ S CS     + G +    + KN   +    
Sbjct: 190 VNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNI 249

Query: 286 EHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG---- 341
              + +VD+  + G +N A  +  +M      A W +++        + +A   F     
Sbjct: 250 LLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHE 309

Query: 342 -KVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELK--GRVH 398
             VI    M +G        YS+A      + +   M    +K D       L    R+ 
Sbjct: 310 RDVISWTAMISG--------YSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLG 361

Query: 399 LFMVGDRNHHQTVE 412
            F +G R +HQ +E
Sbjct: 362 AFDLGKRLYHQYIE 375


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/520 (38%), Positives = 301/520 (57%), Gaps = 6/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +    T  +NA+++G        E++  F  MR +G+  +   +  +   C   
Sbjct: 191 LFDEMPERNVAT--WNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGL 248

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             +  G   H   V+ GLD D  VG+ L  MY++CG +  G  +   +P   +++ N +I
Sbjct: 249 RDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTII 308

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +G  QNG +   LE +  M+S+GV  D VTFV  +SSC+ L A + G ++  Q+   G  
Sbjct: 309 AGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVD 368

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
               +   L++MY+RCG L  +  +F G         +A+I  YG HGHG+ A++LF +M
Sbjct: 369 KVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQM 428

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           +  G  P    F+++L ACSH+GL ++G++ F  M   YG+QP  +HYTC+VDLLGR+G 
Sbjct: 429 MNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGC 488

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L+EA  LI SM + PDG +W  LL ACK  KN ++AE    +VI+L+P ++  YVLLSNI
Sbjct: 489 LDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYVLLSNI 548

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
            + +R    +  VR  MR+  ++K+PG S+VELKG +H F  GD +H +  EI   L+++
Sbjct: 549 RATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQKEIDECLEEM 608

Query: 421 ENLVQE----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
              +++     D +        EE       HSEKLAIAF  ++   G  I VMKNLR+C
Sbjct: 609 MAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEGVPIRVMKNLRVC 668

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DCHL IKL+S++  R+ +VRD +RFHHFK G CSC+DYW
Sbjct: 669 DDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 708



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 130/274 (47%), Gaps = 4/274 (1%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L   Y+K G +   RKLFD++PE+ + TWNAM++G    G     L  + +M+  G+ 
Sbjct: 173 NILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMH 232

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           PD      V   CA L     G +V   +  +G   +  + ++L +MY RCG L++  A+
Sbjct: 233 PDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAV 292

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
              +P  ++VS   II G   +G  E A++ F  M   G+  D   FVS +S+CS     
Sbjct: 293 LRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAAL 352

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
            +G +  +G   K G+       TC+V +  R G L ++ E +       D  +  A++ 
Sbjct: 353 AQG-QQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDS-ERVFFGYCGSDTFLLSAMIS 410

Query: 326 ACKIHKNVELAELAFGKVIK--LEPMNTGYYVLL 357
           A   H + + A   F +++    EP +  +  LL
Sbjct: 411 AYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALL 444



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 14/142 (9%)

Query: 151 FVGVLSSCA-----HLGAHSVGLEVEQQIQA----NGFGSNPFLNNALINMYARCGNLKK 201
           F GVL S A     HL      L   +Q+ A    +G  ++ F  N L+  YA  G+L  
Sbjct: 97  FRGVLWSDAARLFSHLFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTA 156

Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261
           AR +F+ +PR+ V+SW  + GGY  +G    A +LFDEM +  +      + ++++  ++
Sbjct: 157 ARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNV----ATWNAMVAGLTN 212

Query: 262 AGLTDKGLEYFYGMKNKYGLQP 283
            G  ++ L +F  M+ + G+ P
Sbjct: 213 LGFDEESLGFFLDMRRE-GMHP 233


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/525 (39%), Positives = 305/525 (58%), Gaps = 16/525 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +F+E  K+    + ++ +I+ Y  +    EA+ LF +MR+  V  N+ T   +L  C   
Sbjct: 294 LFEEMPKTD--LIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASS 351

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L LG   H   +KFGL+ +  V N +M +Y KCG ++   KLF+++P++  +TWN +I
Sbjct: 352 VSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTII 411

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GY Q G     + L+  M    + P  VT+  VL + A L A   GL++        + 
Sbjct: 412 VGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYN 471

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            +  + N+LI+MYA+CG +  AR  FD M ++  VSW A+I GY +HG    A+ LFD M
Sbjct: 472 KDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMM 531

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
             +  +P+   FV VLSACS+AGL  KG  +F  M   Y ++P  EHYTCMV LLGR G+
Sbjct: 532 QHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGR 591

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
            +EA++LI  +  +P   VW ALLGAC IHK V+L  +    V+++EP +   +VLLSN+
Sbjct: 592 FDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNM 651

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+ A   D +  VR  M++++++K+PG S+VE +G VH F VGD +H     I  ML+ L
Sbjct: 652 YATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGVVHYFSVGDTSHPDIKLICAMLEWL 711

Query: 421 ENLVQEHDGTK---------RSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMK 471
               ++              + D+K  E HL    VHSE+LA+A+G+I T     I ++K
Sbjct: 712 NKKTRDAGYVPDCNAVLLDVQDDEK--ERHL---WVHSERLALAYGLIRTPLSCSIRIIK 766

Query: 472 NLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           NLRIC DCH  +KL+SK+V R+ ++RD  RFHHF+ G CSC DYW
Sbjct: 767 NLRICIDCHTVMKLISKVVQREIVIRDINRFHHFRHGVCSCGDYW 811



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 163/318 (51%), Gaps = 2/318 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  +++ Y  N    E++ LF +MR  G + N+ T+   L  C+      +G   H  
Sbjct: 203 VSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGC 262

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K   D D  VG  L+ +Y K G +   ++LF+++P+  LI W+ MI+ YAQ+  +   
Sbjct: 263 ALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEA 322

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+L+  M+   V P+  TF  VL +CA   +  +G ++   +   G  SN F++NA++++
Sbjct: 323 LDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDV 382

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG ++ +  +F+ +P +  V+W  II GY   G GE A+ LF  ML+  ++P    +
Sbjct: 383 YAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTY 442

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            SVL A +     + GL+  + +  K            ++D+  + G++N+A    + M 
Sbjct: 443 SSVLRASASLAALEPGLQ-IHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKM- 500

Query: 313 VEPDGAVWGALLGACKIH 330
            + D   W A++    +H
Sbjct: 501 NKRDEVSWNAMICGYSMH 518



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 155/324 (47%), Gaps = 4/324 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  ++   T+ +  L  GY  +    +A+    ++ ++G E+N      LL + V  
Sbjct: 92  LFDEMPQTN--TISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSM 149

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
               L    H    K G   D  VG  L+  Y   G+VD  R +FD +  K +++W  M+
Sbjct: 150 DLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMV 209

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           + YA+N      L+L+ +M+ +G  P+  T  G L SC  L A +VG  V        + 
Sbjct: 210 ACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYD 269

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            + F+  AL+ +YA+ G +  A+ +F+ MP+  ++ W+ +I  Y      + A+ LF  M
Sbjct: 270 HDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRM 329

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            ++ + P+   F SVL AC+ +   D G +  +    K+GL         ++D+  + G+
Sbjct: 330 RQTSVVPNNFTFASVLQACASSVSLDLGKQ-IHSCVLKFGLNSNVFVSNAIMDVYAKCGE 388

Query: 301 LNEALELIESMLVEPDGAVWGALL 324
           +  +++L E  L + +   W  ++
Sbjct: 389 IENSMKLFEE-LPDRNDVTWNTII 411



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 120/262 (45%), Gaps = 14/262 (5%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           HC  +K G  LD    N L+  YV+  S+    KLFD++P+   I++  +  GY+++   
Sbjct: 58  HCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQF 117

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              L     +   G   +   F  +L     +    +   +   +   G  ++ F+  AL
Sbjct: 118 HQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTAL 177

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           I+ Y+  GN+  AR +FD +  K +VSWT ++  Y  +   E ++QLF++M   G +P+ 
Sbjct: 178 IDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNN 237

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYG--LQPGPEHY----TCMVDLLGRAGQLNE 303
                 L +C        GLE F   K+ +G  L+   +H       +++L  ++G++ +
Sbjct: 238 FTISGALKSC-------LGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIID 290

Query: 304 ALELIESMLVEPDGAVWGALLG 325
           A  L E M  + D   W  ++ 
Sbjct: 291 AQRLFEEM-PKTDLIPWSLMIA 311


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/508 (39%), Positives = 292/508 (57%), Gaps = 4/508 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+I+ Y+ N    E V +F  M E GV  + +T++ ++  C   G   LG      
Sbjct: 186 VMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEY 245

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             + GL  + ++   L+ MY KCG +   R+LFD +  + ++ W+AMISGY Q       
Sbjct: 246 VDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREA 305

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+ EM+   V P+ VT V VLS+CA LGA   G  V   I+         L  AL++ 
Sbjct: 306 LALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDF 365

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG +  A   F+ MP K   +WTA+I G   +G G  A++LF  M K+ I P    F
Sbjct: 366 YAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTF 425

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + VL ACSH+ L ++G  +F  M   YG++P  EHY C+VDLLGRAG ++EA + I +M 
Sbjct: 426 IGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMP 485

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           +EP+  +W ALL +C +HKNVE+ E A  +++ L P ++G Y+LLSNIY+          
Sbjct: 486 IEPNAVIWRALLSSCAVHKNVEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAM 545

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           +R  M++R ++K PG S +EL G V  F   D +H Q  EIY+ ++++ + ++       
Sbjct: 546 IRKEMKDRGIEKTPGCSLIELDGVVVEFFAEDSDHPQLKEIYQKVEEMIDRIKMAGYIPN 605

Query: 433 SDQKNSE--EHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
           +     E  EH  +  V  HSEKLAIAFG++   PG  I + KNLR+C DCH   KL+SK
Sbjct: 606 TADVRLEVDEHEKEVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVCTDCHSATKLISK 665

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           + +R+ +VRD  RFHHFK G CSC DYW
Sbjct: 666 VYNREIVVRDRNRFHHFKDGTCSCNDYW 693



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 108/314 (34%), Positives = 164/314 (52%), Gaps = 3/314 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
           T CYN L+   +      +A+ LF +M +   V  +  T+ C L  C     L +G    
Sbjct: 83  TPCYNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQ 142

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
              VK GL  D  V + L+ MY  C  V   + LFD V E G++ WNA+I+ Y +NG   
Sbjct: 143 AYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWM 202

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
            V+E+++ M  +GV  D +T V V+++C  +G   +G  V + +   G   N  L  ALI
Sbjct: 203 EVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALI 262

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MYA+CG L KAR +FDGM  + VV+W+A+I GY        A+ LF EM  + + P+  
Sbjct: 263 DMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDV 322

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
             VSVLSAC+  G  + G ++ +    +  L       T +VD   + G +++A+E  ES
Sbjct: 323 TMVSVLSACAVLGALETG-KWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFES 381

Query: 311 MLVEPDGAVWGALL 324
           M V+ +   W AL+
Sbjct: 382 MPVK-NSWTWTALI 394


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/525 (39%), Positives = 305/525 (58%), Gaps = 24/525 (4%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           Y ALI G VL+   ++ + L+ +M    +  +S  +  +L  C     L  G   H   +
Sbjct: 98  YTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVL 157

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT------------------W 116
           K GL  + S+   L+ +Y KCG+ +  R++FD++PE+ ++                   W
Sbjct: 158 KLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGIKDTVCW 217

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
            AMI G  +NG +   LE++R M+   V P+ VT V VLS+C+ LGA  +G  V   +  
Sbjct: 218 TAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDK 277

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
           +    N F+  ALINMY+RCG++ +A+ +F+ M  K V+++ ++I G+ +HG    AV+L
Sbjct: 278 HRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVEL 337

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           F  ++K G  P    FV VL+ACSH GL + G E F+ M   YG++P  EHY CMVDLLG
Sbjct: 338 FRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLG 397

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356
           R G+L EA   I  M V PD  + GALL ACKIH N+ELAE     ++  +  ++G Y+L
Sbjct: 398 RLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKSLVACKNADSGTYIL 457

Query: 357 LSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRM 416
           LSN YS +        VR  MRE  ++K+PG S +E+   +H F++GD  H Q  +IY+ 
Sbjct: 458 LSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSIEVNNEIHEFLLGDLRHPQKEKIYKK 517

Query: 417 LDKLENLVQEHDGTKRS-----DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMK 471
           L++L  +++    T  +     D + SE+      +HSE+LAI +G+I+T P T + V+K
Sbjct: 518 LEELNQILRLEGYTPATEVVLHDIEKSEKEW-ALAIHSERLAICYGLISTKPLTTLRVVK 576

Query: 472 NLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           NLR+C DCHL IKL+S I  R+ +VRD  RFHHF++G CSC DYW
Sbjct: 577 NLRVCNDCHLTIKLISNITRRKIVVRDRNRFHHFENGVCSCGDYW 621



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 155/287 (54%), Gaps = 9/287 (3%)

Query: 2   FDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPG 61
           FD  IK T   VC+ A+I G V N   + A+ +F  M+ + V  N VT++C+L  C + G
Sbjct: 207 FDHGIKDT---VCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELG 263

Query: 62  YLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMIS 121
            L LG        K  ++L+  VG  L+ MY +CG +D  +++F+Q+ EK +IT+N+MI 
Sbjct: 264 ALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIM 323

Query: 122 GYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGS 181
           G+A +G +   +EL+R +   G  P +VTFVGVL++C+H G   +G E+   + A  +G 
Sbjct: 324 GFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSM-AKDYGI 382

Query: 182 NPFLNN--ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
            P + +   ++++  R G L++A +    M      V   A++    IHG+ E+A ++  
Sbjct: 383 EPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAK 442

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
            ++       GT ++ + +A S +G   +  E    M+ + G++  P
Sbjct: 443 SLVACKNADSGT-YILLSNAYSSSGKWKEAAEVRTNMREE-GIEKEP 487



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 118/265 (44%), Gaps = 21/265 (7%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
            S+ Y  K+F       +  + A+I G   +   T  + LY +M +  + PD+     VL
Sbjct: 78  NSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVL 137

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
            +C    A   G EV  Q+   G  SN  +   LI +Y +CG  + AR +FD MP + VV
Sbjct: 138 KACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVV 197

Query: 216 S------------------WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257
           +                  WTA+I G   +G    A+++F  M +  + P+    V VLS
Sbjct: 198 ASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLS 257

Query: 258 ACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDG 317
           ACS  G    G  +     +K+ ++        ++++  R G ++EA  + E M  E + 
Sbjct: 258 ACSELGALQLG-RWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQM-KEKNV 315

Query: 318 AVWGALLGACKIH-KNVELAELAFG 341
             + +++    +H K+VE  EL  G
Sbjct: 316 ITYNSMIMGFALHGKSVEAVELFRG 340



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 112/289 (38%), Gaps = 65/289 (22%)

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
           F+ +L +C H   ++    +  +I  N    +PF+   L+ + +   ++  A  IF    
Sbjct: 35  FISLLQNCKH---NNQIPPIYAKIIRNHHHQDPFVVFELLRVCSNLNSIGYASKIFSHTQ 91

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS---------- 260
              V  +TA+I G  +  +    + L+ +M+ S + PD  A  SVL AC           
Sbjct: 92  NPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGRE 151

Query: 261 -HAGLTDKGLEYFYGMKNK----YG-----------LQPGPEH----------------- 287
            H+ +   GL     ++ K    YG               PE                  
Sbjct: 152 VHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGI 211

Query: 288 -----YTCMVDLLGRAGQLNEALELIESMLVE---PDGAVWGALLGACKIHKNVELAELA 339
                +T M+D L R G+ N ALE+  +M  E   P+      +L AC      EL  L 
Sbjct: 212 KDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACS-----ELGALQ 266

Query: 340 FGKVIK----LEPMNTGYYV--LLSNIYSEARNLDGIMRVRMMMRERRL 382
            G+ ++       +   ++V   L N+YS   ++D   RV   M+E+ +
Sbjct: 267 LGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNV 315


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/520 (40%), Positives = 310/520 (59%), Gaps = 22/520 (4%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++I  Y  +   S+A+ LF +M  +G+ ++  T+  +L        L  G+  H  
Sbjct: 206 VSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQ 265

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGS-VDYGRKLFDQVPEKGLITWNAMISGYAQNG-LAT 130
            +K G   +  VG+ L+ +Y KCG  +   RK+F+++ E  L+ WN M+SGY+QN     
Sbjct: 266 LIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLE 325

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF-LNNAL 189
             LE +R+M+ +G  P+  +FV V+S+C++L + S G ++      +   SN   ++NAL
Sbjct: 326 DALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNAL 385

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           I MY++CGNL+ AR +FD M     VS  ++I GY  HG    ++ LF  ML+  I P  
Sbjct: 386 IAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTS 445

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
             F+SVLSAC+H G  ++G  YF  MK K+ ++P  EHY+CM+DLLGRAG+L+EA  LI 
Sbjct: 446 ITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIA 505

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDG 369
            M   P    W +LLGAC+ H N+ELA  A  +V++LEP N   YV+LSN+Y+ A   + 
Sbjct: 506 RMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEE 565

Query: 370 IMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ---- 425
           +  VR  MR+R +KK PG S++E+K R+H+F+  D +H    EIY  L+++   ++    
Sbjct: 566 VATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGY 625

Query: 426 ---------EHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
                    + DGT+  +++    H      HSEKLA+AFG+I+T  G  ++V+KNLRIC
Sbjct: 626 VPDVRWALVKDDGTRGGEKEIRLGH------HSEKLAVAFGLISTKDGEPVLVVKNLRIC 679

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           GDCH  IK +S I  R+  VRDA RFH FK G CSC DYW
Sbjct: 680 GDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 134/259 (51%), Gaps = 5/259 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V YN LIS Y      + A+ LF  MRE G++++  T+  ++  C D   L +G   H +
Sbjct: 106 VSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITACCDDVGL-IGQ-LHSV 163

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE-KGLITWNAMISGYAQNGLATH 131
            V  G D   SV N L+T Y K G +D  +++F  +   +  ++WN+MI  Y Q+   + 
Sbjct: 164 AVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSK 223

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L L++EM   G+  D  T   VL++   L   S GL+   Q+   GF  N  + + LI+
Sbjct: 224 ALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLID 283

Query: 192 MYARC-GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHG-EVAVQLFDEMLKSGIRPDG 249
           +Y++C G +   R +F+ +    +V W  ++ GY  +    E A++ F +M   G RP+ 
Sbjct: 284 LYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPND 343

Query: 250 TAFVSVLSACSHAGLTDKG 268
            +FV V+SACS+     +G
Sbjct: 344 CSFVCVISACSNLSSPSQG 362



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 144/323 (44%), Gaps = 43/323 (13%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRK--------- 103
           LL  C+    L  G   H + +K  +       N  + +Y KCG + + RK         
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 104 ----------------------LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKS 141
                                 LFDQ+PE  L+++N +IS YA  G     L L+  M+ 
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMRE 133

Query: 142 LGVCPDAVTFVGVLSSCAHLGAHSVGL--EVEQQIQANGFGSNPFLNNALINMYARCGNL 199
           +G+  D  T   V+++C       VGL  ++     ++GF S   +NNAL+  Y + G+L
Sbjct: 134 MGLDMDXFTLSAVITAC----CDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDL 189

Query: 200 KKARAIFDGMPR-KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSA 258
             A+ +F GM   +  VSW ++I  YG H  G  A+ LF EM++ G+  D     SVL+A
Sbjct: 190 DDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTA 249

Query: 259 CSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR-AGQLNEALELIESMLVEPDG 317
            +       GL+ F+G   K G        + ++DL  +  G +++  ++ E  + EPD 
Sbjct: 250 FTCLEDLSGGLQ-FHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEE-ITEPDL 307

Query: 318 AVWGALLGACKIHKNVELAELAF 340
            +W  ++      +N E  E A 
Sbjct: 308 VLWNTMVSG--YSQNEEFLEDAL 328



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 12/181 (6%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           N F  NA+I  YA+      A  +FD +P   +VS+  +I  Y   G    A+ LF  M 
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL----GR 297
           + G+  D     +V++AC      D GL    G  +   +  G + Y  + + L    G+
Sbjct: 133 EMGLDMDXFTLSAVITAC----CDDVGL---IGQLHSVAVSSGFDSYVSVNNALLTYYGK 185

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
            G L++A  +   M    D   W +++ A   H+    A   F ++++   +N   + L 
Sbjct: 186 NGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVR-RGLNVDMFTLA 244

Query: 358 S 358
           S
Sbjct: 245 S 245



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 61/126 (48%), Gaps = 10/126 (7%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPIC-----VDPGY 62
           + H TV  N++I+GY  + +  E++ LF  M E+ +   S+T + +L  C     V+ G+
Sbjct: 406 AEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGW 465

Query: 63  LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP-EKGLITWNAMIS 121
            +  M    +  KF ++ +    +C++ +  + G +     L  ++P   G I W +++ 
Sbjct: 466 NYFNM----MKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLG 521

Query: 122 GYAQNG 127
               +G
Sbjct: 522 ACRTHG 527


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/435 (43%), Positives = 274/435 (62%), Gaps = 4/435 (0%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N ++    K G++   RKLFD++ E+  I+W++M+ GY   G     LE++++M+     
Sbjct: 232 NVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETR 291

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P       VL++C+++GA   G  V   ++ N    +  L  AL++MYA+CG L     +
Sbjct: 292 PGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEV 351

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           F+ M  + + +W A+IGG  IHG  E A++LF ++ +  ++P+G   V VL+AC+HAG  
Sbjct: 352 FEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFV 411

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           DKGL  F  M+  YG+ P  EHY CMVDLLGR+G  +EA +LI SM ++P+ AVWGALLG
Sbjct: 412 DKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLG 471

Query: 326 ACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKD 385
           AC+IH N +LAE     +++LEP N+G YVLLSNIY++    D + ++R +M+ R +K  
Sbjct: 472 ACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTV 531

Query: 386 PGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQK----NSEEH 441
           PG S V+L G VH F +GD +H Q  EIYR L  ++  +Q    +  + Q     + EE 
Sbjct: 532 PGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEK 591

Query: 442 LNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATR 501
                 HSEKLAIAFG+INT PG  I ++KNLR+C DCH   KL+S+I DR+ IVRD  R
Sbjct: 592 ETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVR 651

Query: 502 FHHFKSGFCSCKDYW 516
           +HHFK+G CSCKD+W
Sbjct: 652 YHHFKNGTCSCKDFW 666



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 155/300 (51%), Gaps = 12/300 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE   S    + +++++ GY+      EA+ +F +M+ +        +  +L  C + 
Sbjct: 250 LFDEM--SERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNI 307

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G +  G   H    +  + LD  +G  L+ MY KCG +D G ++F+++ E+ + TWNAMI
Sbjct: 308 GAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMI 367

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            G A +G A   LEL+ +++   + P+ +T VGVL++CAH G    GL + Q ++   +G
Sbjct: 368 GGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMR-EFYG 426

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMPRK-TVVSWTAIIGGYGIHGHGEVAVQLF 237
            +P L +   ++++  R G   +A  + + MP K     W A++G   IHG+ ++A ++ 
Sbjct: 427 VDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVG 486

Query: 238 DEMLKSGIRPDGTAFVSVLSAC-SHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
             +L+  + P  +    +LS   +  G  D   +    MKN+ G++  P     +VDL G
Sbjct: 487 KILLE--LEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNR-GIKTVPG--VSIVDLNG 541



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 90/400 (22%), Positives = 160/400 (40%), Gaps = 74/400 (18%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKC--GSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
           H + ++ G   D  V   L+  Y      + D+  K+F  +P   +  WN +I G  +N 
Sbjct: 53  HALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENN 112

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
                +  Y  M  +   P+  T+  +  +C+   A   G ++   +  +G GS+  + +
Sbjct: 113 KLFKAIYFYGRM-VIDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKS 171

Query: 188 ALINMYAR------------------------------CGNLKKARAIFDGMPRKTV--- 214
           A I MYA                               CG L+ A+ +F  MP K +   
Sbjct: 172 AGIQMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSW 231

Query: 215 ----------------------------VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
                                       +SW++++ GY   G  + A+++F +M +   R
Sbjct: 232 NVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETR 291

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           P      SVL+ACS+ G  D+G  + +    +  ++      T ++D+  + G+L+   E
Sbjct: 292 PGRFILSSVLAACSNIGAIDQG-RWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWE 350

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI--KLEPMNTGYYVLLSNIYSEA 364
           + E M  E +   W A++G   IH   E A   F K+   +++P       +L+   + A
Sbjct: 351 VFEEM-KEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTAC-AHA 408

Query: 365 RNLDGIMRVRMMMRERRLKKDPGYSY----VELKGRVHLF 400
             +D  +R+   MRE     DP   +    V+L GR  LF
Sbjct: 409 GFVDKGLRIFQTMRE-FYGVDPELEHYGCMVDLLGRSGLF 447


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/520 (40%), Positives = 310/520 (59%), Gaps = 22/520 (4%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++I  Y  +   S+A+ LF +M  +G+ ++  T+  +L        L  G+  H  
Sbjct: 206 VSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQ 265

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGS-VDYGRKLFDQVPEKGLITWNAMISGYAQNG-LAT 130
            +K G   +  VG+ L+ +Y KCG  +   RK+F+++ E  L+ WN M+SGY+QN     
Sbjct: 266 LIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLE 325

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF-LNNAL 189
             LE +R+M+ +G  P+  +FV V+S+C++L + S G ++      +   SN   ++NAL
Sbjct: 326 DALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNAL 385

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           I MY++CGNL+ AR +FD M     VS  ++I GY  HG    ++ LF  ML+  I P  
Sbjct: 386 IAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTS 445

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
             F+SVLSAC+H G  ++G  YF  MK K+ ++P  EHY+CM+DLLGRAG+L+EA  LI 
Sbjct: 446 ITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIA 505

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDG 369
            M   P    W +LLGAC+ H N+ELA  A  +V++LEP N   YV+LSN+Y+ A   + 
Sbjct: 506 RMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEE 565

Query: 370 IMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ---- 425
           +  VR  MR+R +KK PG S++E+K R+H+F+  D +H    EIY  L+++   ++    
Sbjct: 566 VATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGY 625

Query: 426 ---------EHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
                    + DGT+  +++    H      HSEKLA+AFG+I+T  G  ++V+KNLRIC
Sbjct: 626 VPDVRWALVKDDGTRGGEKEIRLGH------HSEKLAVAFGLISTKDGEPVLVVKNLRIC 679

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           GDCH  IK +S I  R+  VRDA RFH FK G CSC DYW
Sbjct: 680 GDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 134/259 (51%), Gaps = 5/259 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V YN LIS Y      + A+ LF  MRE G++++  T+  ++  C D   L +G   H +
Sbjct: 106 VSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITACCDDVGL-IGQ-LHSV 163

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE-KGLITWNAMISGYAQNGLATH 131
            V  G D   SV N L+T Y K G +D  +++F  +   +  ++WN+MI  Y Q+   + 
Sbjct: 164 AVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSK 223

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L L++EM   G+  D  T   VL++   L   S GL+   Q+   GF  N  + + LI+
Sbjct: 224 ALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLID 283

Query: 192 MYARC-GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHG-EVAVQLFDEMLKSGIRPDG 249
           +Y++C G +   R +F+ +    +V W  ++ GY  +    E A++ F +M   G RP+ 
Sbjct: 284 LYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPND 343

Query: 250 TAFVSVLSACSHAGLTDKG 268
            +FV V+SACS+     +G
Sbjct: 344 CSFVCVISACSNLSSPSQG 362



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 144/323 (44%), Gaps = 43/323 (13%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRK--------- 103
           LL  C+    L  G   H + +K  +       N  + +Y KCG + + RK         
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 104 ----------------------LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKS 141
                                 LFDQ+PE  L+++N +IS YA  G     L L+  M+ 
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMRE 133

Query: 142 LGVCPDAVTFVGVLSSCAHLGAHSVGL--EVEQQIQANGFGSNPFLNNALINMYARCGNL 199
           +G+  D  T   V+++C       VGL  ++     ++GF S   +NNAL+  Y + G+L
Sbjct: 134 MGLDMDGFTLSAVITAC----CDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDL 189

Query: 200 KKARAIFDGMPR-KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSA 258
             A+ +F GM   +  VSW ++I  YG H  G  A+ LF EM++ G+  D     SVL+A
Sbjct: 190 DDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTA 249

Query: 259 CSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR-AGQLNEALELIESMLVEPDG 317
            +       GL+ F+G   K G        + ++DL  +  G +++  ++ E  + EPD 
Sbjct: 250 FTCLEDLSGGLQ-FHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEE-ITEPDL 307

Query: 318 AVWGALLGACKIHKNVELAELAF 340
            +W  ++      +N E  E A 
Sbjct: 308 VLWNTMVSG--YSQNEEFLEDAL 328



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 12/181 (6%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           N F  NA+I  YA+      A  +FD +P   +VS+  +I  Y   G    A+ LF  M 
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL----GR 297
           + G+  DG    +V++AC      D GL    G  +   +  G + Y  + + L    G+
Sbjct: 133 EMGLDMDGFTLSAVITAC----CDDVGL---IGQLHSVAVSSGFDSYVSVNNALLTYYGK 185

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
            G L++A  +   M    D   W +++ A   H+    A   F ++++   +N   + L 
Sbjct: 186 NGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVR-RGLNVDMFTLA 244

Query: 358 S 358
           S
Sbjct: 245 S 245



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 61/126 (48%), Gaps = 10/126 (7%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPIC-----VDPGY 62
           + H TV  N++I+GY  + +  E++ LF  M E+ +   S+T + +L  C     V+ G+
Sbjct: 406 AEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGW 465

Query: 63  LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP-EKGLITWNAMIS 121
            +  M    +  KF ++ +    +C++ +  + G +     L  ++P   G I W +++ 
Sbjct: 466 NYFNM----MKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLG 521

Query: 122 GYAQNG 127
               +G
Sbjct: 522 ACRTHG 527


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/520 (38%), Positives = 301/520 (57%), Gaps = 6/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +    T  +NA+++G        E++  F  MR +G+  +   +  +   C   
Sbjct: 129 LFDEMPERNVAT--WNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGL 186

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             +  G   H   V+ GLD D  VG+ L  MY++CG +  G  +   +P   +++ N +I
Sbjct: 187 RDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTII 246

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +G  QNG +   LE +  M+S+GV  D VTFV  +SSC+ L A + G ++  Q+   G  
Sbjct: 247 AGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVD 306

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
               +   L++MY+RCG L  +  +F G         +A+I  YG HGHG+ A++LF +M
Sbjct: 307 KVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQM 366

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           +  G  P    F+++L ACSH+GL ++G++ F  M   YG+QP  +HYTC+VDLLGR+G 
Sbjct: 367 MNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGC 426

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L+EA  LI SM + PDG +W  LL ACK  KN ++AE    +VI+L+P ++  YVLLSNI
Sbjct: 427 LDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYVLLSNI 486

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
            + +R    +  VR  MR+  ++K+PG S+VELKG +H F  GD +H +  EI   L+++
Sbjct: 487 RATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQKEIDECLEEM 546

Query: 421 ENLVQE----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
              +++     D +        EE       HSEKLAIAF  ++   G  I VMKNLR+C
Sbjct: 547 MAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEGVPIRVMKNLRVC 606

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DCHL IKL+S++  R+ +VRD +RFHHFK G CSC+DYW
Sbjct: 607 DDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 646



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 130/274 (47%), Gaps = 4/274 (1%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L   Y+K G +   RKLFD++PE+ + TWNAM++G    G     L  + +M+  G+ 
Sbjct: 111 NILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMH 170

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           PD      V   CA L     G +V   +  +G   +  + ++L +MY RCG L++  A+
Sbjct: 171 PDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAV 230

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
              +P  ++VS   II G   +G  E A++ F  M   G+  D   FVS +S+CS     
Sbjct: 231 LRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAAL 290

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
            +G +  +G   K G+       TC+V +  R G L ++ E +       D  +  A++ 
Sbjct: 291 AQG-QQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDS-ERVFFGYCGSDTFLLSAMIS 348

Query: 326 ACKIHKNVELAELAFGKVIK--LEPMNTGYYVLL 357
           A   H + + A   F +++    EP +  +  LL
Sbjct: 349 AYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALL 382



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 14/142 (9%)

Query: 151 FVGVLSSCA-----HLGAHSVGLEVEQQIQA----NGFGSNPFLNNALINMYARCGNLKK 201
           F GVL S A     HL      L   +Q+ A    +G  ++ F  N L+  YA  G+L  
Sbjct: 35  FRGVLWSDAARLFSHLFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTA 94

Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261
           AR +F+ +PR+ V+SW  + GGY  +G    A +LFDEM +  +      + ++++  ++
Sbjct: 95  ARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNV----ATWNAMVAGLTN 150

Query: 262 AGLTDKGLEYFYGMKNKYGLQP 283
            G  ++ L +F  M+ + G+ P
Sbjct: 151 LGFDEESLGFFLDMRRE-GMHP 171


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/525 (38%), Positives = 312/525 (59%), Gaps = 16/525 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD  I      V +N +I+GY  +    +A+ LF +M  +G  ++  T+   +  C   
Sbjct: 114 VFD--IMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAK 171

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             +      H I +K  LD +  VG  ++ +Y KC  +     +F+++PE+ L+TW+++ 
Sbjct: 172 YAINECKQLHTIALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLF 231

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GY QNGL    L L+R  +  GV     T   +LS+CA L     G+++   I   GF 
Sbjct: 232 AGYVQNGLHEEALHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQLHAVILKCGFH 291

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            N F+  +L+++YARCG ++KA A+F  M  K VV W A+I  +  H H   A+ LF++M
Sbjct: 292 GNFFVAASLVDVYARCGQIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKM 351

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            + GI P+   ++SVLS CSHAGL +KG  YF  + +   ++P   HY+CMVD+LGR+G+
Sbjct: 352 QQLGIFPNEVTYLSVLSVCSHAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGK 411

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
            +EA EL+  M  EP  ++WG+LLG+C+ + N+ LA +A  ++ +LEP N G +VLLSN+
Sbjct: 412 TDEAWELLNKMPFEPTASMWGSLLGSCRNYNNIRLARIAAEQLFQLEPDNGGNHVLLSNV 471

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+ + N + ++  R  +++   KK+ G S++E KG+VH+F+VG+R H +  +IY   +KL
Sbjct: 472 YAASGNWENVLMARKYLKDSGAKKEMGRSWIEAKGKVHVFVVGERKHPRITDIY---NKL 528

Query: 421 ENLVQEHDGTKRSDQKNSEEHLNDTEV---------HSEKLAIAFGIINTSPGTEIVVMK 471
           E +   H+  K + + + E  L+D            HSEKLA++FG+I+      I++ K
Sbjct: 529 EEIY--HEMRKFARRTSIECDLHDVHAEQKEELLKHHSEKLALSFGLISLPSNIPIIIHK 586

Query: 472 NLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           NLRICGDCH F+K+ + I +R  IVRD  RFHHFK G CSC D+W
Sbjct: 587 NLRICGDCHSFMKIAAHITERLVIVRDTNRFHHFKDGSCSCGDFW 631



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 150/314 (47%), Gaps = 18/314 (5%)

Query: 54  LPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL 113
           L +C     L +G  CH + + FGL  D    N L+ +Y KCG  D  R +FD +  + +
Sbjct: 64  LQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDIMHVRSI 123

Query: 114 ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA-------HSV 166
           ++WN MI+GY  +G     L+L+  M   G      T    + +CA   A       H++
Sbjct: 124 VSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQLHTI 183

Query: 167 GLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGI 226
            L++          SN F+  A++++YA+C  +K A  +F+ MP +T+V+W+++  GY  
Sbjct: 184 ALKL-------ALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQ 236

Query: 227 HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPE 286
           +G  E A+ LF    + G+        ++LSAC+   L  +G++  + +  K G      
Sbjct: 237 NGLHEEALHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQ-LHAVILKCGFHGNFF 295

Query: 287 HYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
               +VD+  R GQ+ +A  L   M    +  +W A++ +   H +   A + F K+ +L
Sbjct: 296 VAASLVDVYARCGQIEKAYALFAYM-EHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQL 354

Query: 347 E--PMNTGYYVLLS 358
              P    Y  +LS
Sbjct: 355 GIFPNEVTYLSVLS 368


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/545 (38%), Positives = 315/545 (57%), Gaps = 47/545 (8%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           + A+I GY +     EA++++G MR++ +   S T   LL  C     L LG   H    
Sbjct: 117 WTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTF 176

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE------------------------ 110
           +        VGN ++ MYVKC S+D  RK+FD++PE                        
Sbjct: 177 RLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAE 236

Query: 111 -------KGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163
                  K ++ W AM++G+AQN      LE +  M+  G+  D VT  G +S+CA LGA
Sbjct: 237 LFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGA 296

Query: 164 HSVGLEVEQQIQANGFGSNP--FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
                   Q  Q +G+  +    + +ALI+MY++CGN+++A  +F  M  K V +++++I
Sbjct: 297 SKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMI 356

Query: 222 GGYGIHGHGEVAVQLFDEML-KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
            G   HG  + A+ LF  M+ ++ I+P+   FV  L ACSH+GL D+G + F  M   +G
Sbjct: 357 LGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFG 416

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           +QP  +HYTCMVDLLGR G+L EALELI++M VEP G VWGALLGAC+IH N E+AE+A 
Sbjct: 417 VQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAA 476

Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSY-VELKGRVHL 399
             + +LEP   G Y+LLSN+Y+ A +  G++RVR +++E+ LKK P  S+ V+  G++H 
Sbjct: 477 EHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHK 536

Query: 400 FMVGDRNHHQTVEIYRMLDKLENLV--------QEHDGTKRSDQKNSEEHLNDTEVHSEK 451
           F  G+ NH  + +I    DKLE LV        Q    +   D  ++ + L   + H+EK
Sbjct: 537 FFPGNLNHPMSNKIQ---DKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQ-HTEK 592

Query: 452 LAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCS 511
           LA+AF ++ T+  + I +MKNLR+C DCH F++L S++  +  I+RD  RFHHF+SG CS
Sbjct: 593 LALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCS 652

Query: 512 CKDYW 516
           C D+W
Sbjct: 653 CGDFW 657



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 123/279 (44%), Gaps = 40/279 (14%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCG-SVD-YGRKLFDQVPEKGLITWNAMISGYAQNG 127
           H   ++ GLD    +   L+    K G  +D Y R++ + V  +    W A+I GYA  G
Sbjct: 69  HGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAVIRGYAIEG 128

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVE-QQIQANGFGSNPFLN 186
                + +Y  M+   + P + TF  +L +C  +   ++G +   Q  +  GF    ++ 
Sbjct: 129 KFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGF-CFVYVG 187

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL---------- 236
           N +I+MY +C ++  AR +FD MP + V+SWT +I  Y   G+ E A +L          
Sbjct: 188 NTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMV 247

Query: 237 ---------------------FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
                                FD M KSGIR D       +SAC+  G + K  +    +
Sbjct: 248 AWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGAS-KYADRAVQI 306

Query: 276 KNKYGLQPGPEHY---TCMVDLLGRAGQLNEALELIESM 311
             K G  P  +H    + ++D+  + G + EA+ +  SM
Sbjct: 307 AQKSGYSPS-DHVVIGSALIDMYSKCGNVEEAVNVFMSM 344



 Score = 40.0 bits (92), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 6/141 (4%)

Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261
           AR + + +  +    WTA+I GY I G  + A+ ++  M K  I P    F ++L AC  
Sbjct: 102 ARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGT 161

Query: 262 AGLTDKGLEYFYGMKNKYGLQPGPEHY--TCMVDLLGRAGQLNEALELIESMLVEPDGAV 319
               + G ++       + L+     Y    M+D+  +   ++ A ++ + M  E D   
Sbjct: 162 MKDLNLGRQFH---AQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEM-PERDVIS 217

Query: 320 WGALLGACKIHKNVELAELAF 340
           W  L+ A     N+E A   F
Sbjct: 218 WTELIAAYARVGNMECAAELF 238


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/544 (37%), Positives = 315/544 (57%), Gaps = 41/544 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +N++ISGY       EA+ +F KM  E  ++ ++ T+  +L  C +   L +G   H 
Sbjct: 240 VSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHA 299

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGR----------------------------- 102
             ++   +   +VGN L++MY K G V+  R                             
Sbjct: 300 YILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNV 359

Query: 103 ----KLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC 158
               ++F+++ ++ ++ W AMI GY QNGL    LEL+R M + G  P++ T   +LS  
Sbjct: 360 KPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVS 419

Query: 159 AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP--RKTVVS 216
           + L     G ++       G  S P + NALI MYA+ GN+  A+ +FD +P  +K +VS
Sbjct: 420 SSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFD-LPNGKKEIVS 478

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
           WT++I     HG G+ A+ LF+ ML  G++PD   +V VLSAC+H GL ++G +Y+  M 
Sbjct: 479 WTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMT 538

Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELA 336
             + ++P   HY CM+DL GRAG L EA   IESM +EPD   WG+LL +CKIHKN +LA
Sbjct: 539 EVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLA 598

Query: 337 ELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGR 396
           ++A  +++ ++P N+G Y+ L+N+YS     +   + R +M++R ++K+ G S++ +K  
Sbjct: 599 KVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNE 658

Query: 397 VHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQ--KNSEEHLNDT--EVHSEKL 452
           VH F V D  H Q  EIY+++ ++   +++      ++    + EE + +   + HSEKL
Sbjct: 659 VHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKL 718

Query: 453 AIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSC 512
           AIAFG++NT   T + +MKNLR+C DCH  IK +SK+V R+ IVRDATRFHHFK G CSC
Sbjct: 719 AIAFGLLNTPENTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSC 778

Query: 513 KDYW 516
           +DYW
Sbjct: 779 RDYW 782



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 157/383 (40%), Gaps = 66/383 (17%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+I GY    L   A+ +F KM  + V  +  T+  +L  C     L +G   H  
Sbjct: 108 VSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSF 167

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI------------ 120
            VK GL     V   L+ MY KCG     + +FD++  K + TWNA+I            
Sbjct: 168 VVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELA 227

Query: 121 -------------------SGYAQNGLATHVLELYREM-KSLGVCPDAVTFVGVLSSCAH 160
                              SGY+Q G     L ++ +M     + PD  T   +LS+CA+
Sbjct: 228 ASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACAN 287

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC------------------------ 196
           L   ++G ++   I      ++  + NALI+MYA+                         
Sbjct: 288 LEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFT 347

Query: 197 ---------GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
                    GN+K AR IF+ +  + VV+WTA+I GY  +G    A++LF  M+  G  P
Sbjct: 348 SLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEP 407

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           +     ++LS  S   + + G +  +    K G    P     ++ +  + G +N A  +
Sbjct: 408 NSYTLAAMLSVSSSLTILEHGKQ-IHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRV 466

Query: 308 IESMLVEPDGAVWGALLGACKIH 330
            +    + +   W +++ A   H
Sbjct: 467 FDLPNGKKEIVSWTSMIMALAQH 489



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 138/314 (43%), Gaps = 41/314 (13%)

Query: 59  DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
           DP   + G   HC  +K GL L   + N LMT Y K GS+ +   +FD++P K   +WN 
Sbjct: 25  DP---FAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNT 81

Query: 119 MISGYA-------------------------------QNGLATHVLELYREMKSLGVCPD 147
           +ISGYA                               Q GL  + + ++ +M S  V P 
Sbjct: 82  LISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPS 141

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
             T   VLSSCA      +G ++   +   G GS   +  +L+NMYA+CG+   A+ +FD
Sbjct: 142 QFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFD 201

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            M  K + +W A+I  Y   G  E+A   F++M    I     ++ S++S  S  G   +
Sbjct: 202 RMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDI----VSWNSMISGYSQQGYNLE 257

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALL 324
            L  F  M N+  L+P       ++       +LN   ++   +L    E  GAV  AL+
Sbjct: 258 ALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALI 317

Query: 325 GACKIHKNVELAEL 338
                   VE+A L
Sbjct: 318 SMYAKSGGVEIARL 331



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 107/266 (40%), Gaps = 35/266 (13%)

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
           F  +L +   +     G  V  QI   G     +L N L+  YA+ G+L+ A  +FD MP
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72

Query: 211 RKTVVSWTAIIGGYGIHGHGEV-------------------------------AVQLFDE 239
            K+  SW  +I GY   G+ EV                               A+ +F +
Sbjct: 73  LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M+   + P      +VLS+C+     D G +  +    K GL       T ++++  + G
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRK-IHSFVVKLGLGSCVPVATSLLNMYAKCG 191

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
               A  + + M V+ + + W AL+         ELA   F K+   + ++  +  ++S 
Sbjct: 192 DPVIAKVVFDRMTVK-NISTWNALISLYMQSGQFELAASQFEKMPDRDIVS--WNSMISG 248

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKD 385
              +  NL+ ++    M+ E  LK D
Sbjct: 249 YSQQGYNLEALVIFSKMLNEPSLKPD 274


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/508 (37%), Positives = 314/508 (61%), Gaps = 5/508 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++ +++G+V      +A+ ++ +MRE GV+ + V M+ ++  C     + +G   H  
Sbjct: 175 VTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGH 234

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ G+ +D      L+ MY K G +D   ++F  +  +  ++W+AMISG+AQNG +   
Sbjct: 235 LLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEA 294

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+R M++ G+ PD+   V  L +C+++G   +G  V   I    F  N  L  A I+M
Sbjct: 295 LRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFI-VRRFDFNCILGTAAIDM 353

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++CG+L  A+ +F+ +  + ++ W A+I   G HG G+ A+ LF EM ++G+RPD   F
Sbjct: 354 YSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATF 413

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S+LSA SH+GL ++G  +F  M N + + P  +HY C+VDLL R+G + EA +L+ SM 
Sbjct: 414 ASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMK 473

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            EP  A+W ALL  C  +K +EL E     +++L+P + G   L+SN+Y+  +  D + +
Sbjct: 474 AEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQ 533

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR +M++   KK PG S +E++G  H+F++ D++H Q  EI   + KL+  +++     R
Sbjct: 534 VRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPR 593

Query: 433 SD--QKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
           ++    + EE + + ++  HSE+LAIAFG++NT PGT +V++KNLR+CGDCH  IK +SK
Sbjct: 594 TEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISK 653

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           I DR+ +VRDA RFHHFK G CSC+DYW
Sbjct: 654 IADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 151/319 (47%), Gaps = 9/319 (2%)

Query: 46  NSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLF 105
           +S T    L  C   G L  G          G   D  V + L+ +Y + G++    K+F
Sbjct: 107 DSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVF 166

Query: 106 DQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHS 165
            ++P +  +TW+ M++G+   G     +++YR M+  GV  D V  +GV+ +C       
Sbjct: 167 VRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVR 226

Query: 166 VGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYG 225
           +G  V   +  +G   +     +L++MYA+ G L  A  +F  M  +  VSW+A+I G+ 
Sbjct: 227 MGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFA 286

Query: 226 IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG--LEYFYGMKNKYGLQP 283
            +G  + A++LF  M  SGI+PD  A VS L ACS+ G    G  +  F   +  +    
Sbjct: 287 QNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNCIL 346

Query: 284 GPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
           G    T  +D+  + G L  A +++ +M+ + D  +W A++  C  H   + A   F ++
Sbjct: 347 G----TAAIDMYSKCGSLASA-QMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEM 401

Query: 344 --IKLEPMNTGYYVLLSNI 360
               + P +  +  LLS +
Sbjct: 402 NETGMRPDHATFASLLSAL 420


>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/510 (39%), Positives = 301/510 (59%), Gaps = 33/510 (6%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NALI G   NS    +VS F  M    +  + +T+  +L        + LG C H   +
Sbjct: 106 FNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVM 165

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK----GLITWNAMISGYAQNGLAT 130
           K GL+ D  V   L+ MYVK G + +G +LFD+ P++     ++ WN             
Sbjct: 166 KLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWN------------- 212

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
                       GV P+ +T V  L +C  +GA  VG  +   + +NGF  N  +  AL+
Sbjct: 213 ------------GVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALV 260

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MYA+CGN+K A  +F     K +++W+ +I G+ IHG  + A+Q F +M  +GI PD  
Sbjct: 261 DMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEV 320

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            F+++L+ACSH+G  D+GL +F  M+  Y ++P  +HYT +VDLLGRAG+L+EAL  I+S
Sbjct: 321 IFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQS 380

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M + PD  +WGAL  AC+ HKN+E+AEL   K+++LEP + G YV LSN+Y+     + +
Sbjct: 381 MPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDV 440

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
            RVR +M+ R ++KDPG+SY+E++G+VH F+ GD  H +  EI   L+++    ++    
Sbjct: 441 ERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYM 500

Query: 431 KRS----DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
             +         EE  +    HSEKLA+AFG+I+T+PG+ I ++KNLR+CGDCH  +K  
Sbjct: 501 PETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKYA 560

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SK+  R+ I+RD  RFHHFK G CSC DYW
Sbjct: 561 SKLSRREIILRDIKRFHHFKDGTCSCGDYW 590



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 97/250 (38%), Gaps = 29/250 (11%)

Query: 97  SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS 156
           S+DY   +F       L  +NA+I G A+N      +  +  M  L + PD +T   VL 
Sbjct: 87  SLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLK 146

Query: 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS 216
           S A L    +G  +   +   G   + F+  +L++MY + G L     +FD  P++    
Sbjct: 147 SVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAE 206

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
                                  +L +G+RP+    VS L AC+  G    G E  +   
Sbjct: 207 ---------------------SILLWNGVRPNDLTVVSALLACTKIGALQVG-ERIHNYL 244

Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGA---VWGALLGACKIHKNV 333
           +  G Q      T +VD+  + G +  A      + VE  G     W  ++    IH   
Sbjct: 245 SSNGFQLNRGIGTALVDMYAKCGNIKSA----SRVFVETKGKDLLTWSVMIWGWAIHGCF 300

Query: 334 ELAELAFGKV 343
           + A   F K+
Sbjct: 301 DQALQCFVKM 310



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 73/177 (41%), Gaps = 21/177 (11%)

Query: 172 QQIQANGFGSNPFLNN----ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH 227
            QI A  F  N F N+     LI+      +L  A +IF       +  + A+I G   +
Sbjct: 57  HQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAEN 116

Query: 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL-EYFYGMKNKYGLQPGPE 286
              E +V  F  ML+  IRPD      VL +   A L D GL    +G   K GL+    
Sbjct: 117 SRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSV--AALVDVGLGRCLHGGVMKLGLEFDSF 174

Query: 287 HYTCMVDLLGRAGQLNEALELI---------ESML----VEP-DGAVWGALLGACKI 329
               +VD+  + G+L   L+L          ES+L    V P D  V  ALL   KI
Sbjct: 175 VRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNGVRPNDLTVVSALLACTKI 231


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/524 (41%), Positives = 309/524 (58%), Gaps = 35/524 (6%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGV-EINSVTMLCLLPICVDPGYLWLGM 67
           THL V    L+S Y     V+ A  +F +M E  V   N+V   C               
Sbjct: 139 THLFVG-TTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACF-------------- 183

Query: 68  CCHCICVKFGLDLDF--------SVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              C  VK G D+ F        +  N ++  Y K G ++  RKLF ++P K  ++W+ M
Sbjct: 184 --RCGDVK-GADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTM 240

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I G+A NG        +RE++ +G+ P+ V+  G LS+CA  GA   G  +   I+ +GF
Sbjct: 241 IVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGF 300

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRK-TVVSWTAIIGGYGIHGHGEVAVQLFD 238
                +NNAL++ Y++CGN+  AR +F+ MP K ++VSWT++I G  +HG+GE A+QLF 
Sbjct: 301 LWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFH 360

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
           EM +SGIRPDG AF+S+L ACSHAGL +KG EYFY MK+ Y ++P  EHY CMVDL GRA
Sbjct: 361 EMEESGIRPDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRA 420

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           GQL++A E I  M V P   +W  LLGAC IH NV+LAE    ++ +L+P N+G +VLLS
Sbjct: 421 GQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLS 480

Query: 359 NIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD 418
           NIY+ A     +  VR  M ++R+ K PG+S +E+   ++ F+ G+  +  T E Y  L 
Sbjct: 481 NIYAVAGKWKDVAAVRRSMTDQRMNKTPGWSMIEVDKIMYSFVAGEVQNSITEEAYEKLK 540

Query: 419 ------KLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKN 472
                 ++E       G+   D ++ EE  +    HSEKLA+AFGI     G+ I ++KN
Sbjct: 541 EIMLKLRVEGCYIPEVGSVLHDIED-EEKEDSVSRHSEKLAVAFGIARLCKGSIIRIVKN 599

Query: 473 LRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           LR+C DCH  +KL+SK+   + +VRD +RFH FK+G CSC+DYW
Sbjct: 600 LRVCRDCHTVMKLISKVYGLEIVVRDRSRFHSFKTGSCSCRDYW 643



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 127/326 (38%), Gaps = 66/326 (20%)

Query: 70  HCICVKFGLDLD-FSVGNCLMTMYVKC-GSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
           H    K GLD D    G  L+   V    ++DY R+LF   P   +   N +I G A++ 
Sbjct: 25  HAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPNPDVFMHNTLIRGLAESD 84

Query: 128 LATHVLELYREMKSLGVCP-DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
              + L  + EM+     P D+ +F  +L + A   +   G+++  Q   +G  ++ F+ 
Sbjct: 85  TPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQAIVHGLDTHLFVG 144

Query: 187 NALINMYA-------------------------------RCGNLKKARAIFDGMPRKTVV 215
             L++MY+                               RCG++K A  +F+ MP + + 
Sbjct: 145 TTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNRMPFRNLT 204

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEM-------------------------------LKSG 244
           SW  ++ GY   G  E+A +LF EM                                + G
Sbjct: 205 SWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVG 264

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
           +RP+  +    LSAC+ AG  + G +  +G   K G          ++D   + G +  A
Sbjct: 265 MRPNEVSLTGALSACADAGAIEFG-KILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMA 323

Query: 305 LELIESMLVEPDGAVWGALLGACKIH 330
             + E M  +     W +++    +H
Sbjct: 324 RLVFERMPEKRSIVSWTSMIAGLAMH 349


>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56550-like [Cucumis sativus]
          Length = 579

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/515 (39%), Positives = 315/515 (61%), Gaps = 14/515 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEI-NSVTMLCLLPICVDPGYLWLGMCCH 70
           T  +N++I G+  +S   +A+  + +M      I ++ T   +L  C            H
Sbjct: 69  TEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCKEVH 128

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
              ++ G D D  V   L+  Y   G V   R++FD++P + L+ WNAMIS ++Q GL  
Sbjct: 129 GSVIRCGYDADVIVCTNLVKCYSAMGLVCIARQVFDKMPARDLVAWNAMISCFSQQGLHQ 188

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             L+ Y +M+S  V  D  T VG++SSCAHLGA ++G+++ +  + NG   + ++ NALI
Sbjct: 189 EALQTYNQMRSENVDVDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSLYVGNALI 248

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MYA+CG+L +A  IFD M RK + +W ++I GYG+HG G  A+  F +ML++ I+P+  
Sbjct: 249 DMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQPNPV 308

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            F+ +L  CSH GL  +G++YF  M +K+ L+P  +HY C+VDL GRAG+L++ALE++ S
Sbjct: 309 TFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGKLDKALEIV-S 367

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
                D  +W  LLG+CKIHKNV + E+A  ++ +L   + G  +LL+ IY+  ++  G+
Sbjct: 368 NSSHNDSVLWRILLGSCKIHKNVTIGEIAMNRLSELGATSAGDCILLATIYAGEKDKAGV 427

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHD-- 428
            R+R M++ +  K  PG+S++E+  +VH F+V D++H  +VE+Y   +KL  ++ +    
Sbjct: 428 ARMRKMIKSQGKKTTPGWSWIEIGEQVHKFVVDDKSHRYSVEVY---EKLREVIHQASFF 484

Query: 429 GTKRSDQKNSEEHLNDTEV-------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHL 481
           G    +  +S + L+  E        HSEKLAIAFG+  T+ GT+I ++KNLR+C DCH 
Sbjct: 485 GYVGDESISSLDMLSTMETLKTSCTYHSEKLAIAFGLARTADGTQIRIVKNLRVCRDCHS 544

Query: 482 FIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           FIK VS   +R+ IVRD  RFHHFK G CSC DYW
Sbjct: 545 FIKAVSVAFNREIIVRDRVRFHHFKGGECSCNDYW 579



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 158/333 (47%), Gaps = 15/333 (4%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM--KSLGVCPDAVTFVG 153
           GS+ Y + LF Q+       WN++I G+AQ+      +  Y +M   S  + PD  TF  
Sbjct: 52  GSLAYAQLLFHQMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSI-PDTFTFSF 110

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
           VL +C  + A     EV   +   G+ ++  +   L+  Y+  G +  AR +FD MP + 
Sbjct: 111 VLKACERIKAERKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGLVCIARQVFDKMPARD 170

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
           +V+W A+I  +   G  + A+Q +++M    +  DG   V ++S+C+H G  + G++  +
Sbjct: 171 LVAWNAMISCFSQQGLHQEALQTYNQMRSENVDVDGFTLVGLISSCAHLGALNIGVQ-MH 229

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNV 333
               + GL         ++D+  + G L++A+ LI   +   D   W +++    +H   
Sbjct: 230 RFARENGLDQSLYVGNALIDMYAKCGSLDQAI-LIFDRMQRKDIFTWNSMIVGYGVHGRG 288

Query: 334 ELAELAFGKVI--KLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGY--S 389
             A   F +++  +++P    +  LL     +    +G+    +M  + RLK +  +   
Sbjct: 289 SEAIYCFQQMLEARIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGC 348

Query: 390 YVELKGRV-----HLFMVGDRNHHQTVEIYRML 417
            V+L GR       L +V + +H+ +V ++R+L
Sbjct: 349 LVDLYGRAGKLDKALEIVSNSSHNDSV-LWRIL 380


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/544 (39%), Positives = 296/544 (54%), Gaps = 43/544 (7%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICV----DPGYLWLGMCCH 70
           ++ALI     ++    A+ L+  +   G+     T+  LL         PG   L +  H
Sbjct: 40  HDALIRALSRSARPHLALPLYAHLLRAGLLPTPHTLPSLLKSMALSPAVPGAAVLALTVH 99

Query: 71  CICVKFGLD--------------------------------LDFSVGNCLMTMYVKCGSV 98
              VK GLD                                +D S  N L+T Y + G +
Sbjct: 100 THAVKLGLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDASTFNTLITAYARAGRL 159

Query: 99  DYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC 158
              R LFD++P +  ++W+AM++GY Q G     L ++  M++  V PD    VGVL++C
Sbjct: 160 ADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAAC 219

Query: 159 AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWT 218
           A  GA   G  V   ++A+G   N F   AL++MY++CG ++ A  +F+ M  K V++WT
Sbjct: 220 AQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWT 279

Query: 219 AIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278
            +I G  +HG G  AV LF +M  SGIRPD  AF+ VL AC+HAGL DKG E F  M  K
Sbjct: 280 TMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRK 339

Query: 279 YGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAEL 338
           YG++P  EHY CMVDLL R G L EA E+I+ M +EPD  +WGAL+  C+ HKNVE AE 
Sbjct: 340 YGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAGCRFHKNVEFAEY 399

Query: 339 AFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVH 398
                I LEP  +G YVLLSNIY+ +        +R +MRE+ + K PG S VE+ G +H
Sbjct: 400 VAKHWILLEPDKSGAYVLLSNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEVNGVIH 459

Query: 399 LFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQK------NSEEHLNDTEVHSEKL 452
            F+VGD +H +  +I     +++  ++  +G    D K        EE       HSEKL
Sbjct: 460 QFIVGDLSHPRIKDILSKWYEIDTRIRLEEGYI-PDMKEVLLDIEEEEKEGALSRHSEKL 518

Query: 453 AIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSC 512
           AIAF +I+ S    I + KNLR+C DCH   KL+SK+  R+ +VRD TRFH FK G CSC
Sbjct: 519 AIAFALISISDNMPIRIFKNLRVCHDCHHVTKLISKVYGREIVVRDRTRFHLFKEGTCSC 578

Query: 513 KDYW 516
           KDYW
Sbjct: 579 KDYW 582



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 118/236 (50%), Gaps = 6/236 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE        V ++A+++GYV      EA+ +F +M+ + V  +   ++ +L  C   
Sbjct: 165 LFDEMPARN--AVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQH 222

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  G   H      G+ ++   G  L+ MY KCG V     +F+++  K ++ W  MI
Sbjct: 223 GALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMI 282

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            G A +G  +  + L+ +M+S G+ PD + F+GVL +C H G    G E+   +    +G
Sbjct: 283 KGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSM-VRKYG 341

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMPRKT-VVSWTAIIGGYGIHGHGEVA 233
             P + +   ++++ AR G L +A+ +   MP +   + W A++ G   H + E A
Sbjct: 342 IKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAGCRFHKNVEFA 397


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/524 (40%), Positives = 303/524 (57%), Gaps = 12/524 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  +     V + A+ISGY      SEA+ LF +M     E N  T   +L  C   
Sbjct: 67  VFDEMRERN--VVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGF 124

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
               LG   H    K   +    VG+ L+ MY K G +   R +F+ +PE+ +++  A+I
Sbjct: 125 SGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 184

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGYAQ GL    LEL+  ++  G+  + VT+  +L++ + L A   G +V   +      
Sbjct: 185 SGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELP 244

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
               L N+LI+MY++CGNL  AR IF+ MP +TV+SW A++ GY  HG G   V+LF  M
Sbjct: 245 FYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLM 304

Query: 241 LKSG-IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG-LQPGPEHYTCMVDLLGRA 298
            +   ++PD   F++VLS CSH GL DKGLE F  M N    ++ G EHY C++DLLGRA
Sbjct: 305 REENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRA 364

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           G++ EA ELI+ M  EP  A+WG+LLGAC++H N  + E    +++++EP N G YV+LS
Sbjct: 365 GRVEEAFELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILS 424

Query: 359 NIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD 418
           N+Y+ A   + +  VR +M E+ + K+PG S++EL   +H F   DR+H +  E++  + 
Sbjct: 425 NLYASAGRWEDVRNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRREEVFLKVR 484

Query: 419 KLENLVQEHDGTKRSDQK------NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKN 472
           +L  LV+  +     DQ       + E+       HSEKLA+AFG+I+TS G  + V+KN
Sbjct: 485 EL--LVKFKESGYVPDQSCVLYDVDEEQKEKILLGHSEKLALAFGLISTSEGVPLRVIKN 542

Query: 473 LRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           LRIC DCH F K VSK+  RQ  +RD  RFHH   G CSC DYW
Sbjct: 543 LRICVDCHNFAKFVSKVYGRQVSIRDKNRFHHVAGGICSCGDYW 586



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 161/334 (48%), Gaps = 25/334 (7%)

Query: 38  MREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS 97
           M  QG EI       LL  CV+   +  G   H   +K        +   L+ +Y KC  
Sbjct: 1   MAIQGPEIKFDGYNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCEC 60

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
           +   R +FD++ E+ +++W AMISGY+Q G A+  L L+ +M      P+  TF  VLSS
Sbjct: 61  LGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSS 120

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
           C       +G ++   I    + ++ F+ ++L++MYA+ G + +AR +F+ +P + VVS 
Sbjct: 121 CTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 180

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG--------- 268
           TAII GY   G  E A++LF  + + G+  +   + S+L+A S     D G         
Sbjct: 181 TAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLR 240

Query: 269 --LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
             L ++  ++N             ++D+  + G LN A ++  +M V    +    L+G 
Sbjct: 241 CELPFYVVLQNS------------LIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGY 288

Query: 327 CKIHKNVELAEL--AFGKVIKLEPMNTGYYVLLS 358
            K  K +E+ +L     +  K++P +  +  +LS
Sbjct: 289 SKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLS 322


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 217/553 (39%), Positives = 312/553 (56%), Gaps = 48/553 (8%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMRE--QGVE----------------INSVTMLCL 53
            V ++++I+ Y ++    EA+ +F +M +  QG+                 I S T+   
Sbjct: 404 VVIWSSMIAAYGIHGRGGEALEIFDQMIQVMQGITSCYQISMQPQVQPPLAITSCTLATH 463

Query: 54  LPICVDPGYL-----WLGMCCHCI--------------CVKFGLDLDFSVGNCLMTMYVK 94
           +P  V   Y+     WLG                       +GL  D  +      MYV 
Sbjct: 464 IPWKVKAFYMRAHFRWLGHFWEIFPTYPFQAADMSKSNIFAYGLQYDSRILTKFAIMYVS 523

Query: 95  CGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM-------KSLGVCPD 147
              +D    +F+ +P      WN MI G+A +G     LELY +M        + GV P+
Sbjct: 524 FNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPN 583

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
            V+ + VL +C +LGA   G      +   GF  +  +  A+++MY++CG+L  AR +FD
Sbjct: 584 RVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFD 643

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
               K +V W+A+I  YGIHGHG  A+ LFD+M+K+G+RP    F  VLSACSH+GL ++
Sbjct: 644 ETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEE 703

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           G  YF  M  ++ +     +Y CMVDLLGRAGQL+EA++LIE+M VEPD ++WG+LLGAC
Sbjct: 704 GKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGAC 763

Query: 328 KIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPG 387
           +IH N++LAE     +  L+P++ GY+VLLSNIY+     + + +VR MM  R   K  G
Sbjct: 764 RIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQG 823

Query: 388 YSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD--QKNSEEHLNDT 445
           +S VE   +VH F VGDR+H Q  ++Y  L++L   ++       +D    + EE   + 
Sbjct: 824 FSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAKEA 883

Query: 446 EV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFH 503
            +  HSE+LAIAFG+INTSPGT + + KNLRICGDCH  IKL+SKIV+R  +VRD  RFH
Sbjct: 884 ALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDMHRFH 943

Query: 504 HFKSGFCSCKDYW 516
            F+ G CSC DYW
Sbjct: 944 RFEDGVCSCGDYW 956



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 122/231 (52%), Gaps = 35/231 (15%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            + ++ +I+ Y  N   +EA++LF +M E+  E NSVT++  L  C              
Sbjct: 237 VISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACA------------- 283

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                                    +++ G+K+      K +++W A++SGYAQNG+A  
Sbjct: 284 ----------------------VSRNLEEGKKIHKIAVWKDVVSWVALLSGYAQNGMAYK 321

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            + ++R M S G+ PDAV  V +L++ + LG     L +   +  +GF SN F+  +LI 
Sbjct: 322 SMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIE 381

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
           +Y++CG+L  A  +F GM  + VV W+++I  YGIHG G  A+++FD+M++
Sbjct: 382 LYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMIQ 432



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 140/330 (42%), Gaps = 73/330 (22%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF+E  +    TV + ++++GY  N+   EA++LF +M         V M C        
Sbjct: 161 VFEEFQRPD--TVLWTSMVTGYQQNNDPEEALALFSQM---------VMMDCF------- 202

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
                             D D  + N L+ +Y K G       LF ++PEK +I+W+ MI
Sbjct: 203 ------------------DGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMI 244

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           + YA N  A   L L+ EM      P++VT V  L +C                      
Sbjct: 245 ACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQAC---------------------- 282

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
                        A   NL++ + I      K VVSW A++ GY  +G    ++ +F  M
Sbjct: 283 -------------AVSRNLEEGKKIHKIAVWKDVVSWVALLSGYAQNGMAYKSMGVFRNM 329

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           L  GI+PD  A V +L+A S  G+  + L   +G   + G          +++L  + G 
Sbjct: 330 LSDGIQPDAVAVVKILAASSELGIFQQAL-CLHGYVVRSGFNSNVFVGASLIELYSKCGS 388

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIH 330
           L +A++L + M+V  D  +W +++ A  IH
Sbjct: 389 LGDAVKLFKGMIVR-DVVIWSSMIAAYGIH 417



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 119/271 (43%), Gaps = 11/271 (4%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H    K G+  D      L ++Y KC S+   RK+FD+ P   +  WN+ +  Y +    
Sbjct: 24  HSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQW 83

Query: 130 THVLELYREMK-SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG-FGSNPFLNN 187
              L L+  M  + G  PD  T    L +CA L    +G  +    + N   GS+ F+ +
Sbjct: 84  EETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGS 143

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           AL+ +Y++CG + +A  +F+   R   V WT+++ GY  +   E A+ LF +M+      
Sbjct: 144 ALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCFD 203

Query: 248 DGTAFV-SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
                V S+L+  +  G        F  M  K  +      ++ M+         NEAL 
Sbjct: 204 GDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVIS-----WSTMIACYANNEAANEALN 258

Query: 307 LIESML---VEPDGAVWGALLGACKIHKNVE 334
           L   M+    EP+     + L AC + +N+E
Sbjct: 259 LFHEMIEKRFEPNSVTVVSALQACAVSRNLE 289



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 111/263 (42%), Gaps = 40/263 (15%)

Query: 1   VFDESI-KSTHLTVCYNALISGYVLNSLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICV 58
           VFDE+   + HL   +N+ +  Y       E + LF  M    G   ++ T+   L  C 
Sbjct: 58  VFDETPHPNVHL---WNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACA 114

Query: 59  DPGYLWLGMCCHCICVKFG-LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWN 117
               L LG   H    K   +  D  VG+ L+ +Y KCG +    K+F++      + W 
Sbjct: 115 GLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWT 174

Query: 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
           +M++GY QN      L L+ +M              V+  C                   
Sbjct: 175 SMVTGYQQNNDPEEALALFSQM--------------VMMDC------------------- 201

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
            F  +  L N+L+N+YA+ G  K A  +F  MP K V+SW+ +I  Y  +     A+ LF
Sbjct: 202 -FDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLF 260

Query: 238 DEMLKSGIRPDGTAFVSVLSACS 260
            EM++    P+    VS L AC+
Sbjct: 261 HEMIEKRFEPNSVTVVSALQACA 283



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 87/182 (47%), Gaps = 6/182 (3%)

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
           ++  Q+   G   + F    L ++YA+C +L+ AR +FD  P   V  W + +  Y    
Sbjct: 22  QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREK 81

Query: 229 HGEVAVQLFDEML-KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH 287
             E  ++LF  M+  +G  PD       L AC+   + + G +  +G   K   + G + 
Sbjct: 82  QWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELG-KVIHGFAKKND-EIGSDM 139

Query: 288 Y--TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345
           +  + +V+L  + GQ+ EAL++ E     PD  +W +++   + + + E A   F +++ 
Sbjct: 140 FVGSALVELYSKCGQMGEALKVFEE-FQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVM 198

Query: 346 LE 347
           ++
Sbjct: 199 MD 200


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/528 (40%), Positives = 312/528 (59%), Gaps = 19/528 (3%)

Query: 1   VFDE-SIKSTHLTVCYNALISGYVLNSLVSEAVS---LFGKMREQGVEINSVTMLCLLPI 56
           VFDE  +K     V + ++I+GY  +   S A +   LF +M   G+  N   +  L+  
Sbjct: 148 VFDEMCVKDV---VTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKC 204

Query: 57  CVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
           C   G    G   H  C K+G   +  VG+ L+ MY +CG +   R +FD++  K  ++W
Sbjct: 205 CGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSW 264

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
           NA+ISG+A+ G     L L+ +M+  G      T+  +L S +  G+   G  +   +  
Sbjct: 265 NALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMK 324

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
           +G     ++ N L++MYA+ GN+  A+ +FD + +  VVS  +++ GY  HG G+ AV+L
Sbjct: 325 SGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVEL 384

Query: 237 FDEM-LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295
           F+EM L   I P+   F+SVL+ACSHAGL D+GL YF  MK KYGL+P   HYT +VDL 
Sbjct: 385 FEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMK-KYGLEPKLSHYTTVVDLF 443

Query: 296 GRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV 355
           GRAG L++A   IE M +EP+  +WGALLGA K+HKN E+   A  KV++L+P   G + 
Sbjct: 444 GRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAHT 503

Query: 356 LLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYR 415
           LLSNIY+ A     + +VR  M++  LKK+P  S+VE++  VH+F   D +H Q  ++Y 
Sbjct: 504 LLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSVHIFSANDISHPQKNKVYE 563

Query: 416 MLDKLENLVQEHDGTKRS-------DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIV 468
           M + L   ++E      +       DQ+  E +L   + HSEKLA+AF ++NT PG+ I 
Sbjct: 564 MWENLNQKIKEIGYVPDTSHVHVFVDQQEKELNL---QYHSEKLALAFALLNTKPGSVIR 620

Query: 469 VMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +MKN+R+CGDCH  IK VS +V R+ IVRD  RFHHF+ G CSC+DYW
Sbjct: 621 IMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFRDGSCSCRDYW 668



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 102/356 (28%), Positives = 169/356 (47%), Gaps = 42/356 (11%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           LL  C   G L  G   H   +      D  + N ++ MY KCGS++  R++FD++  K 
Sbjct: 97  LLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQVFDEMCVKD 156

Query: 113 LITWNAMISGYAQNGL---ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLE 169
           ++TW +MI+GY+Q+G    AT  L L+ EM   G+ P+      ++  C  LG+   G +
Sbjct: 157 VVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQ 216

Query: 170 VEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGH 229
           +       GF  N F+ ++L++MYARCG L+++R +FD +  K  VSW A+I G+   G 
Sbjct: 217 IHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALISGFARKGE 276

Query: 230 GEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG--------------------- 268
           GE A+ LF +M + G       + ++L + S  G  ++G                     
Sbjct: 277 GEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNT 336

Query: 269 LEYFYG-------MKNKYGLQPGPEHYTCMVDLLGRA--GQLNEALELIESML----VEP 315
           L + Y         K  +      +  +C   L+G A  G   EA+EL E M+    +EP
Sbjct: 337 LLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEP 396

Query: 316 DGAVWGALLGACKIHKNVELAELAFGKVIK---LEPMNTGYYVLLSNIYSEARNLD 368
           +   + ++L AC  H  +    L + +++K   LEP    +Y  + +++  A  LD
Sbjct: 397 NDITFLSVLTACS-HAGLLDEGLYYFELMKKYGLEP-KLSHYTTVVDLFGRAGLLD 450



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 102/198 (51%), Gaps = 8/198 (4%)

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
           HVL+L   + +  + PD   +  +L  C  LG    G  V   +  + F ++  + N+++
Sbjct: 77  HVLDL---INNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSIL 133

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGE---VAVQLFDEMLKSGIRP 247
            MYA+CG+L+ AR +FD M  K VV+WT++I GY   G+      A+ LF EM++ G+RP
Sbjct: 134 FMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRP 193

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           +  A  S++  C   G    G +  +G   KYG Q      + +VD+  R G+L E+  L
Sbjct: 194 NEFALSSLVKCCGFLGSCVDGKQ-IHGCCWKYGFQENVFVGSSLVDMYARCGELRES-RL 251

Query: 308 IESMLVEPDGAVWGALLG 325
           +   L   +   W AL+ 
Sbjct: 252 VFDELESKNEVSWNALIS 269


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/523 (37%), Positives = 307/523 (58%), Gaps = 51/523 (9%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
            FDE+ +   + +C N +++ YV    V+EA  +F  MRE+                   
Sbjct: 97  AFDEAPRRD-VFLC-NVMLAAYVTRGEVAEARRVFDGMRER------------------- 135

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
                               D    N ++  Y   G VD  R++F+ + ++   +W++M+
Sbjct: 136 --------------------DMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMM 175

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           S Y +   +   LEL+REM++  V PD  T V VLS+C+ +GA +VG EV Q +++NG  
Sbjct: 176 SAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVE 235

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            +  L  ALI+MYA+CG+++ +  +F  MP K V++W+++I G   HG G  A+ LF  M
Sbjct: 236 LDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRM 295

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           L  G++P+   F+ VL +C+H GL   G +YF  M   +G+ P  +HY CMVDLLGR+G 
Sbjct: 296 LSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGH 355

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           + EA +LI  M  EPD  +W ALLGAC+I+KNVE+AE A  K+  L+P   G+YVLLSNI
Sbjct: 356 IEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLRVLDPHADGHYVLLSNI 415

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y++A + +G+  +R  +R  R+++ PG S +E +  +H F+ GDR+H ++ EIY+ML ++
Sbjct: 416 YAQANSWEGVAEMRRTLRRERIQRIPGRSSIEWQNTIHEFISGDRSHPRSKEIYKMLGEM 475

Query: 421 ENLVQEHDGTKRS-------DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
            + +++      +       D+++ E  L +   HSEKLA+AFG++ T  G+ + + KNL
Sbjct: 476 MDRLRQAGYKPMTGLVLQDIDEQSKERALAE---HSEKLAVAFGLLTTPAGSTLRITKNL 532

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           R C DCH  IKL++ + +R+ I+RD  RFHHF  G CSCKDYW
Sbjct: 533 RACEDCHSAIKLIALLYERKLIIRDRNRFHHFSEGRCSCKDYW 575



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 85/211 (40%), Gaps = 65/211 (30%)

Query: 177 NGFGS-NPFLNNALINMYARCGNLKKARAIFDGMPRKTV--------------------- 214
           +GF + + F+  AL+  YA+ G    ARA FD  PR+ V                     
Sbjct: 68  SGFAAADLFVRTALVEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAYVTRGEVAEARR 127

Query: 215 ----------VSWTAIIGGYGIHGHGEVAVQLFD-------------------------- 238
                     VSW  +I GY ++G  ++A ++F+                          
Sbjct: 128 VFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDA 187

Query: 239 -----EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293
                EM  + + PD T  VSVLSACS  G    G E    +++  G++   +  T ++D
Sbjct: 188 LELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESN-GVELDVKLGTALID 246

Query: 294 LLGRAGQLNEALELIESMLVEPDGAVWGALL 324
           +  + G +  ++ +  SM V+ D   W +++
Sbjct: 247 MYAKCGDIENSVRVFHSMPVK-DVLTWSSMI 276


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/592 (37%), Positives = 316/592 (53%), Gaps = 85/592 (14%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  +     +  N +I  YV N    E V +FG M    V  +  T  C+L  C   
Sbjct: 96  VFDEIPERN--VIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCS 153

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G + +G   H    K GL     VGN L++MY KCG +   R + D++  + +++WN+++
Sbjct: 154 GTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLV 213

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSV-------------- 166
            GYAQN      LE+ REM+S+ +  DA T   +L + ++    +V              
Sbjct: 214 VGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKS 273

Query: 167 -------------------GLEVEQQIQANGFGSNP------------------------ 183
                               +E+  +++A+GF  +                         
Sbjct: 274 LVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHG 333

Query: 184 -----------FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
                       L NALI+MYA+CG L+KAR +F+ M  + VVSWTA+I  YG  G G  
Sbjct: 334 YIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCD 393

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
           AV LF ++  SG+ PD  AFV+ L+ACSHAGL ++G   F  M + Y + P  EH  CMV
Sbjct: 394 AVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMV 453

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTG 352
           DLLGRAG++ EA   I+ M +EP+  VWGALLGAC++H + ++  LA  K+ +L P  +G
Sbjct: 454 DLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSG 513

Query: 353 YYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVE 412
           YYVLLSNIY++A   + +  +R +M+ + LKK+PG S VE+   +H F+VGDR+H Q+ E
Sbjct: 514 YYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDE 573

Query: 413 IYRMLDKLENLVQE-------HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGT 465
           IYR LD L   ++E              ++++ E HL    VHSEKLAI F ++NT    
Sbjct: 574 IYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHL---AVHSEKLAIVFALMNTKEEE 630

Query: 466 E-----IVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSC 512
           E     I + KNLRICGDCH+  KL+S+I  R+ I+RD  RFH F+ G CSC
Sbjct: 631 EDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSC 682



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 126/265 (47%), Gaps = 11/265 (4%)

Query: 83  SVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL 142
           S+G  LM  Y     V   RK+FD++PE+ +I  N MI  Y  NG     ++++  M   
Sbjct: 75  SLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGC 134

Query: 143 GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202
            V PD  TF  VL +C+  G   +G ++       G  S  F+ N L++MY +CG L +A
Sbjct: 135 NVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEA 194

Query: 203 RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262
           R + D M R+ VVSW +++ GY  +   + A+++  EM    I  D     S+L A S+ 
Sbjct: 195 RLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNT 254

Query: 263 GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV---EPDGAV 319
             T + + Y   M  K G +     +  M+ +  +     EA+EL   M     EPD   
Sbjct: 255 --TTENVMYVKDMFFKMG-KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVS 311

Query: 320 WGALLGACKIHKNVELAELAFGKVI 344
             ++L AC      + + L+ GK I
Sbjct: 312 ITSVLPACG-----DTSALSLGKKI 331



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 8/146 (5%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGY---GIHGHGEVAVQLFD 238
           N  L   L+  YA   ++  AR +FD +P + V+    +I  Y   G +G G   V++F 
Sbjct: 73  NSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEG---VKVFG 129

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
            M    +RPD   F  VL ACS +G    G +  +G   K GL         +V + G+ 
Sbjct: 130 TMCGCNVRPDHYTFPCVLKACSCSGTIVIGRK-IHGSATKVGLSSTLFVGNGLVSMYGKC 188

Query: 299 GQLNEALELIESMLVEPDGAVWGALL 324
           G L+EA  +++ M    D   W +L+
Sbjct: 189 GFLSEARLVLDEM-SRRDVVSWNSLV 213


>gi|357126224|ref|XP_003564788.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Brachypodium distachyon]
          Length = 515

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/516 (39%), Positives = 301/516 (58%), Gaps = 19/516 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V YNA IS      L   A++LF +MR  +G+  +  T     PI      L +      
Sbjct: 7   VAYNAAISRCSRAGLHQRALALFHEMRAARGLPADEYT---FPPILNSAALLRVPAAADA 63

Query: 72  ICVKFGLDLDFS---VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
           +          +   V N L+  Y K       R LFD++P + ++TW ++++G A++G 
Sbjct: 64  LHALLLRAGLVAHLHVANALVDAYAKLSRGGAARALFDEMPRRDVVTWTSLLTGLARSGS 123

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG--FGSNPFLN 186
               L +YR+M + GV PD       LSSCA     S  LE+ Q + A     G  PFL+
Sbjct: 124 HDAALRVYRDMVASGVEPDEYVVAAALSSCAG----STTLELGQSVHATAVRLGLEPFLS 179

Query: 187 --NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
             N+L++MYA+ G+L++AR +FD    +  V+WTA+I GY  +G GE ++Q++ EM+ SG
Sbjct: 180 VGNSLVSMYAKTGSLREARKVFDATRLRCPVTWTALIVGYAQNGRGEESLQVYAEMVHSG 239

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
            RPD   F+ +L ACSHAGL D G  +F  M+  +G+ PGP+HY CMVD+LGRAG+L+EA
Sbjct: 240 CRPDYVTFIGLLFACSHAGLVDAGRAHFKSMQADHGITPGPDHYACMVDVLGRAGRLDEA 299

Query: 305 LELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEA 364
           +EL++   ++ D  VW ALLGAC+ H+N ELAE A   V +L+P +   Y++LSN+YS  
Sbjct: 300 MELLDQSTMKLDATVWKALLGACRTHRNAELAERAAEMVWRLDPTDAVPYIMLSNLYSRE 359

Query: 365 RNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLV 424
           R    + R+R +M+ R + K+PG S+V   G  HLF V DR H +T EIYR ++++   V
Sbjct: 360 RRWSDVARIRTLMKSRGIAKEPGCSWVVASGVTHLFYVEDRGHPRTDEIYRKVEEMMEKV 419

Query: 425 QEHDGTKRSDQKNSEEHLNDTEV----HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCH 480
           +       +D    +E     E     HSE+LA+AFG++    G  + V KNLR+CGDCH
Sbjct: 420 RAEGFVADTDWALQDEAPEGREKGLAHHSERLAVAFGLLALPAGAPVRVFKNLRVCGDCH 479

Query: 481 LFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           + IK+V+K+  R+ I+RD+  FHH + G CSC DYW
Sbjct: 480 VAIKMVAKVYGREIILRDSNCFHHMRDGVCSCGDYW 515



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 97/218 (44%), Gaps = 40/218 (18%)

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ------ANGFGSNPFLN----------- 186
           V P  V +   +S C+  G H   L +  +++      A+ +   P LN           
Sbjct: 2   VVPPGVAYNAAISRCSRAGLHQRALALFHEMRAARGLPADEYTFPPILNSAALLRVPAAA 61

Query: 187 -------------------NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH 227
                              NAL++ YA+      ARA+FD MPR+ VV+WT+++ G    
Sbjct: 62  DALHALLLRAGLVAHLHVANALVDAYAKLSRGGAARALFDEMPRRDVVTWTSLLTGLARS 121

Query: 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH 287
           G  + A++++ +M+ SG+ PD     + LS+C+ +   + G +  +    + GL+P    
Sbjct: 122 GSHDAALRVYRDMVASGVEPDEYVVAAALSSCAGSTTLELG-QSVHATAVRLGLEPFLSV 180

Query: 288 YTCMVDLLGRAGQLNEALELIESMLVE-PDGAVWGALL 324
              +V +  + G L EA ++ ++  +  P    W AL+
Sbjct: 181 GNSLVSMYAKTGSLREARKVFDATRLRCP--VTWTALI 216


>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
 gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/533 (39%), Positives = 315/533 (59%), Gaps = 30/533 (5%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVD 59
           +FDE   ST   VC+ A+I+ Y       EA+ LF KM+ E+G+  +S+ ++ +      
Sbjct: 14  IFDEM--STKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSIAVVSVASAVGQ 71

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
            G +      H    +  L  +  VGN ++ M+ KCG+ +  R +FD + E+ +I+WN+M
Sbjct: 72  LGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMMMERDVISWNSM 131

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           +SGY QNG AT  L L+ EM+     P  VT + ++S+CA+LG   +G +    I  +  
Sbjct: 132 LSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGRKFHDFIVDSRM 191

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMP--RKTVVSWTAIIGGYGIHGHGEVAVQLF 237
             +  L+NAL++MYA+CG+L+KA  +F+G+P   +   SW  +I GYG+HGHG+ A++LF
Sbjct: 192 EIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEALELF 251

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
             M + G+ P+   F S+LSACSHAGL D+G + F  MK +  +    +H+ C+VD+LGR
Sbjct: 252 SRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMK-RLSVTLEDKHHACVVDMLGR 310

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
           AG L EA +LI+ M   P   VWGALL ACKIH N+EL + A   +++LEP +TGYYVL+
Sbjct: 311 AGLLQEAFDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAASNLLQLEPNHTGYYVLM 370

Query: 358 SNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML 417
           SNIY+ +     + ++R  M+ + LKK   +S +E    +  F   D+ +    E+Y+  
Sbjct: 371 SNIYAASNKWKEVWKLRQDMKNKGLKKPAAFSMIEYGKDILGFHTADQENPYRHEVYK-- 428

Query: 418 DKLENLVQE--------------HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSP 463
            K+E+L  E              HD     ++++ E  LN    HSEKLA+AFG++   P
Sbjct: 429 -KMESLAIEMKMAGYVPDLSCALHD----VEEEDKERMLN---YHSEKLAVAFGVLKIDP 480

Query: 464 GTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           G  I V KNLR+C DCH   K +S I  R+ IVRDA RFHHF+ G CSCKDYW
Sbjct: 481 GMVIRVTKNLRVCNDCHSAFKYISHIYQRKIIVRDANRFHHFQGGTCSCKDYW 533



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 137/278 (49%), Gaps = 17/278 (6%)

Query: 91  MYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKS-LGVCPDAV 149
           MY KCG     RK+FD++  K L+ W AMI+ Y Q       L L+++M+   G+  D++
Sbjct: 1   MYAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSI 60

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL------NNALINMYARCGNLKKAR 203
             V V S+   LG      +V+     +G+     L       N+++ M+ +CGN +KAR
Sbjct: 61  AVVSVASAVGQLG------DVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKAR 114

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG 263
            +FD M  + V+SW +++ GY  +G    A+ LFDEM  S  +P     + ++SAC++ G
Sbjct: 115 LVFDMMMERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLG 174

Query: 264 LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM-LVEPDGAVWGA 322
               G + F+       ++        ++D+  + G L +A++L   +   E +   W  
Sbjct: 175 FRHLGRK-FHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNV 233

Query: 323 LLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
           L+    +H + + A   F ++ +  +EP +  +  +LS
Sbjct: 234 LISGYGMHGHGKEALELFSRMQEEGVEPNHFTFTSILS 271


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/508 (39%), Positives = 295/508 (58%), Gaps = 5/508 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  LISGY  +    +A+  F +M   G   N  T+  ++           G   H  
Sbjct: 127 VTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGF 186

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
           CVK G D +  VG+ L+ +Y + G +D  + +FD +  +  ++WNA+I+G+A+       
Sbjct: 187 CVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKA 246

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           LEL++ M   G  P   ++  +  +C+  G    G  V   +  +G     F  N L++M
Sbjct: 247 LELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDM 306

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+ G++  AR IFD + ++ VVSW +++  Y  HG G+ AV  F+EM + GIRP+  +F
Sbjct: 307 YAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISF 366

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +SVL+ACSH+GL D+G  Y+  MK K G+ P   HY  +VDLLGRAG LN AL  IE M 
Sbjct: 367 LSVLTACSHSGLLDEGWHYYELMK-KDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMP 425

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           +EP  A+W ALL AC++HKN EL   A   V +L+P + G +V+L NIY+     +   R
Sbjct: 426 IEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAAR 485

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYR----MLDKLENLVQEHD 428
           VR  M+E  +KK+P  S+VE++  +H+F+  D  H Q  EI R    +L K++ L    D
Sbjct: 486 VRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPD 545

Query: 429 GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
            +      + +E   + + HSEK+A+AF ++NT PG+ I + KN+R+CGDCH  IKL SK
Sbjct: 546 TSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASK 605

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +V R+ IVRD  RFHHFK G CSCKDYW
Sbjct: 606 VVGREIIVRDTNRFHHFKDGNCSCKDYW 633



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 140/278 (50%), Gaps = 2/278 (0%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           LL  C     L  G   H   ++     D  +GN L+ MY KCGS++  RK+F+++P++ 
Sbjct: 66  LLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRD 125

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
            +TW  +ISGY+Q+      L  + +M   G  P+  T   V+ + A       G ++  
Sbjct: 126 FVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHG 185

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
                GF SN  + +AL+++Y R G +  A+ +FD +  +  VSW A+I G+      E 
Sbjct: 186 FCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEK 245

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
           A++LF  ML+ G RP   ++ S+  ACS  G  ++G ++ +    K G +        ++
Sbjct: 246 ALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQG-KWVHAYMIKSGEKLVAFAGNTLL 304

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           D+  ++G +++A ++ +  L + D   W +LL A   H
Sbjct: 305 DMYAKSGSIHDARKIFDR-LAKRDVVSWNSLLTAYAQH 341


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/527 (40%), Positives = 318/527 (60%), Gaps = 14/527 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD++   T     YNAL     L     E ++++ +M   G+  +  T   +L  CV  
Sbjct: 127 VFDKTRNRT--IYVYNALFRALSLAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVAS 184

Query: 61  ----GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
                 L  G   H   ++ G D    +   L+ MY K G V     +F+Q+P K +++W
Sbjct: 185 ECFVSLLNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSW 244

Query: 117 NAMISGYAQNGLATHVLELYREM--KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
           +AMI+ YA+NG A   LEL+RE+  ++  +CP++VT V VL +CA L A   G  +   I
Sbjct: 245 SAMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYI 304

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
              G  S   + +AL+ MYARCG L+  + +FD M ++ VVSW ++I  YG+HG G+ A+
Sbjct: 305 LRKGLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAI 364

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
            +F+EM  +G+ P   +FVSVL ACSHAGL D+G   F  M   +G+ P  EHY CMVDL
Sbjct: 365 GIFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVDL 424

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           LGRA +L EA ++IE+M +EP   VWG+LLG+C+IH NVELAE A  ++  LEP N G Y
Sbjct: 425 LGRANRLEEAAKIIENMRIEPGPKVWGSLLGSCRIHCNVELAERASIRLFDLEPTNAGNY 484

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
           VLL++IY+EA   DG+ RV+ ++  R L+K PG S++E+K +++ F+  D  + +  +++
Sbjct: 485 VLLADIYAEAGMWDGVKRVKKLLEARGLQKVPGRSWIEVKRKIYSFVSVDEVNPRMEQLH 544

Query: 415 RMLDKLENLVQEHDGTKRS-----DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVV 469
            +L KL   ++E     ++     D K +E+       HSEKLA+AFG+IN+S G  I +
Sbjct: 545 ALLVKLSMELKEEGYVPQTKVVLYDLKAAEKE-RIVLGHSEKLAVAFGLINSSKGEVIRI 603

Query: 470 MKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            K+LR+C DCH F K +SK  +++ +VRD  RFHHF+ G CSC DYW
Sbjct: 604 TKSLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRDGVCSCGDYW 650



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 149/332 (44%), Gaps = 22/332 (6%)

Query: 19  ISGYVLNSLVSEAVS--LFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCC------- 69
           I    LN   S A +  L   + +QG    ++ +L L P      Y  L + C       
Sbjct: 28  ICSITLNPTASTADNNKLIQSLCKQGNLTQALELLSLEPNPAQHTYELLILSCTHQNSLL 87

Query: 70  -----HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYA 124
                H   ++ G D D  +   L+ MY    S+D  RK+FD+   + +  +NA+    +
Sbjct: 88  DAQRVHRHLLENGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALS 147

Query: 125 QNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA----HLGAHSVGLEVEQQIQANGFG 180
             G    VL +YR M S+G+  D  T+  VL +C      +   + G E+   I  +G+ 
Sbjct: 148 LAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHGYD 207

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
               +   L++MYA+ G +  A  +F+ MP K VVSW+A+I  Y  +G    A++LF E+
Sbjct: 208 GYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFREL 267

Query: 241 L--KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
           +     + P+    VSVL AC+     ++G    +G   + GL       + +V +  R 
Sbjct: 268 MLETQDLCPNSVTMVSVLQACAALAALEQG-RLIHGYILRKGLDSILPVISALVTMYARC 326

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           G+L     + + M  + D   W +L+ +  +H
Sbjct: 327 GKLELGQRVFDQM-DKRDVVSWNSLISSYGVH 357



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 103/243 (42%), Gaps = 11/243 (4%)

Query: 109 PEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGL 168
           P       N +I    + G  T  LEL     SL   P   T+  ++ SC H  +     
Sbjct: 35  PTASTADNNKLIQSLCKQGNLTQALELL----SLEPNPAQHTYELLILSCTHQNSLLDAQ 90

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
            V + +  NGF  +PFL   LINMY+   ++  AR +FD    +T+  + A+     + G
Sbjct: 91  RVHRHLLENGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAG 150

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA----GLTDKGLEYFYGMKNKYGLQPG 284
           HGE  + ++  M   GI  D   +  VL AC  +     L +KG E  +    ++G    
Sbjct: 151 HGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGRE-IHAHILRHGYDGY 209

Query: 285 PEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI 344
               T +VD+  + G ++ A  +   M V+ +   W A++ AC          L   + +
Sbjct: 210 VHIMTTLVDMYAKFGCVSNASCVFNQMPVK-NVVSWSAMI-ACYAKNGKAFEALELFREL 267

Query: 345 KLE 347
            LE
Sbjct: 268 MLE 270


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/509 (38%), Positives = 292/509 (57%), Gaps = 5/509 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V YN +IS Y        ++  F +M+  G +  +     +L I  +   L +G   HC 
Sbjct: 317 VSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQ 376

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +    D    VGN L+ MY KC   +    +F  +P++  ++W A+ISGY Q GL    
Sbjct: 377 ALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAG 436

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+L+ +M+   +  D  TF  VL + A   +  +G ++   I  +G   N F  + L++M
Sbjct: 437 LKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDM 496

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG++K A  +F+ MP +  VSW A+I  +  +G GE A+  F +M++SG++PD  + 
Sbjct: 497 YAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSI 556

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + VL+ACSH G  ++G EYF  M   YG+ P  +HY CM+DLLGR G+  EA +L++ M 
Sbjct: 557 LGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMP 616

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPM-NTGYYVLLSNIYSEARNLDGIM 371
            EPD  +W ++L AC+IHKN  LAE A  K+  +E + +   YV +SNIY+ A   + + 
Sbjct: 617 FEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVR 676

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH---- 427
            V+  MRER +KK P YS+VE+  ++H+F   D+ H    EI R +++L   ++      
Sbjct: 677 DVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKP 736

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           D +      + +  +   + HSE+LA+AF +I+T  G  IVVMKNLR C DCH  IKL+S
Sbjct: 737 DTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLIS 796

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KIV R+  VRD +RFHHF  G CSC DYW
Sbjct: 797 KIVKREITVRDTSRFHHFSEGVCSCGDYW 825



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 112/350 (32%), Positives = 179/350 (51%), Gaps = 26/350 (7%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V +N LI+GY  + L +E++ LF KMR+ G + +  T   +L   V      LG   H 
Sbjct: 215 SVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHA 274

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + V  G   D SVGN ++  Y K   V   R LFD++PE   +++N +IS Y+Q      
Sbjct: 275 LSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEA 334

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L  +REM+ +G       F  +LS  A+L +  +G ++  Q       S   + N+L++
Sbjct: 335 SLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVD 394

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGY---GIHGHGEVAVQLFDEMLKSGIRPD 248
           MYA+C   ++A  IF  +P++T VSWTA+I GY   G+HG G   ++LF +M  S +R D
Sbjct: 395 MYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAG---LKLFTKMRGSNLRAD 451

Query: 249 GTAFVSVLSACSHAG--LTDKGLEYFY----GMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
            + F +VL A +     L  K L  F      ++N +         + +VD+  + G + 
Sbjct: 452 QSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFS-------GSGLVDMYAKCGSIK 504

Query: 303 EALELIESMLVEPD--GAVWGALLGACKIHKNVELAELAFGKVIK--LEP 348
           +A+++ E M   PD     W AL+ A   + + E A  AF K+I+  L+P
Sbjct: 505 DAVQVFEEM---PDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQP 551



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 140/279 (50%), Gaps = 5/279 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           TV + ALISGYV   L    + LF KMR   +  +  T   +L        L LG   H 
Sbjct: 417 TVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHA 476

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             ++ G   +   G+ L+ MY KCGS+    ++F+++P++  ++WNA+IS +A NG    
Sbjct: 477 FIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEA 536

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--AL 189
            +  + +M   G+ PD+V+ +GVL++C+H G    G E  Q + +  +G  P   +   +
Sbjct: 537 AIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAM-SPIYGITPKKKHYACM 595

Query: 190 INMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           +++  R G   +A  + D MP     + W++++    IH +  +A +  +++       D
Sbjct: 596 LDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRD 655

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH 287
             A+VS+ +  + AG  +K  +    M+ + G++  P +
Sbjct: 656 AAAYVSMSNIYAAAGEWEKVRDVKKAMRER-GIKKVPAY 693



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 117/249 (46%), Gaps = 4/249 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKM-REQGVEI-NSVTMLCLLPICVDPGYLWLGMCCH 70
           V +  L+  Y  NS   EA  LF +M R     + + VT   LLP C D          H
Sbjct: 111 VTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVH 170

Query: 71  CICVKFGLDLD--FSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
              VK G D +   +V N L+  Y +   +D    LF+++PEK  +T+N +I+GY ++GL
Sbjct: 171 AFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGL 230

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
            T  + L+ +M+  G  P   TF GVL +   L   ++G ++       GF  +  + N 
Sbjct: 231 YTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQ 290

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           +++ Y++   + + R +FD MP    VS+  +I  Y      E ++  F EM   G    
Sbjct: 291 ILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRR 350

Query: 249 GTAFVSVLS 257
              F ++LS
Sbjct: 351 NFPFATMLS 359



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 92/188 (48%), Gaps = 6/188 (3%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N +++ +VK G V   R LFD +P++ ++TW  ++  YA+N       +L+R+M     C
Sbjct: 83  NTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSC 142

Query: 146 --PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL--NNALINMYARCGNLKK 201
             PD VTF  +L  C      +   +V       GF +NPFL  +N L+  Y     L  
Sbjct: 143 TLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDL 202

Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261
           A  +F+ +P K  V++  +I GY   G    ++ LF +M +SG +P    F  VL A   
Sbjct: 203 ACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAV-- 260

Query: 262 AGLTDKGL 269
            GL D  L
Sbjct: 261 VGLHDFAL 268



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 3/106 (2%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           N    N +I+ + + G++  AR +FD MP +TVV+WT ++G Y  + H + A +LF +M 
Sbjct: 78  NTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMC 137

Query: 242 KSG--IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
           +S     PD   F ++L  C+ A +    +   +    K G    P
Sbjct: 138 RSSSCTLPDHVTFTTLLPGCNDA-VPQNAVGQVHAFAVKLGFDTNP 182


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/520 (39%), Positives = 303/520 (58%), Gaps = 6/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE       T  +NA+++G   + L  E++  F  MR +G++ +   +  L   C   
Sbjct: 22  LFDEMPARNVAT--WNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFRCCAGL 79

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             +  G   H   V+ GLD D  VG+ L  MY++CG +  G      +P   +++ N  I
Sbjct: 80  RDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNIVSCNTTI 139

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SG  QNG A   LE +  M+  GV  +AVTFV  ++SC+ L A + G ++       G  
Sbjct: 140 SGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHALAIKTGVD 199

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
               +  +L++MY+RCG L  +  +        +V  +A+I  YG HGHG+ AV LF +M
Sbjct: 200 KVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQKAVGLFKQM 259

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           + +G  P+   F+++L ACSH+GL D+G+  F  M   YGLQP  +HYTC+VDLLGR+G 
Sbjct: 260 MAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIVDLLGRSGC 319

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           LNEA +LI SM V+PDG +W  LL ACK  K  ++AE    +VI+L+P ++  YVLLSNI
Sbjct: 320 LNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELDPHDSASYVLLSNI 379

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
            + +   + + +VR  MRE+ ++K+PG S+VELKG++H F  GD +H +  EI   L+++
Sbjct: 380 RATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESHSRQREIVECLEEM 439

Query: 421 ENLVQE----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
              +++     D +        EE       HSEKLAIAF  ++   G  I VMKNLR+C
Sbjct: 440 MTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLSLPEGVPIRVMKNLRVC 499

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DCH+ IKL+SK++ R+ +VRD +RFHHFK G CSC DYW
Sbjct: 500 DDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 539



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 129/277 (46%), Gaps = 10/277 (3%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+  YVK G ++  RKLFD++P + + TWNAM++G   +GL    L  +  M+  G+ 
Sbjct: 4   NILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQ 63

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           PD      +   CA L     G +V   +  +G   +  + ++L +MY RCG L+   A 
Sbjct: 64  PDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAA 123

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
              +P   +VS    I G   +G  E A++ F  M  +G+  +   FVS +++CS     
Sbjct: 124 LRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAAL 183

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGA---VWGA 322
            +G +  + +  K G+       T +V +  R G L ++    E + +E  G    +  A
Sbjct: 184 AQG-QQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDS----ERVCLEYSGTDLVLCSA 238

Query: 323 LLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLL 357
           ++ A   H + + A   F +++    EP    +  LL
Sbjct: 239 MISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLL 275



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYG 274
           +SW  +IGGY  +G  E A +LFDEM    +      + ++++  +++GL ++ L +F+ 
Sbjct: 1   MSWNILIGGYVKNGDLETARKLFDEMPARNV----ATWNAMVAGLTNSGLNEESLGFFFA 56

Query: 275 MKNKYGLQP 283
           M+ + G+QP
Sbjct: 57  MRRE-GMQP 64


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/526 (40%), Positives = 307/526 (58%), Gaps = 12/526 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
            FD S +     VC+ A+IS Y  N   S A+ L  +M  +G+++   T + LL  C   
Sbjct: 190 AFDRSPEKD--VVCWTAMISAYAHNWRTSRALELVRRMDLEGIKLGLPTYVSLLDACAST 247

Query: 61  GYLWLGMCCHCICVKFGLDLDFSV-GNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
             L  G+  H      GLD   +V    L+ +Y KCG VD  R++ D +P +  ++W AM
Sbjct: 248 MDLRNGVAFHQRAAAIGLDRSSTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSWTAM 307

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN-G 178
           I+ YAQNG A   + L++ M   G  P  +T + V+ SCA LG  S+G  +  +I+++  
Sbjct: 308 IAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPS 367

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT--VVSWTAIIGGYGIHGHGEVAVQL 236
           F  +  L NA+I MY +CGNL+ AR +F+ +P +T  VV+WTA+I  Y  +G GE A++L
Sbjct: 368 FSQSLMLLNAVITMYGKCGNLELAREVFECVPLRTRSVVTWTAMIRAYAQNGVGEEAIEL 427

Query: 237 FDEML-KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295
           F EML   G  P+   F+SVL ACSH G  ++  E+F  M   +G+ P  +HY C+VDLL
Sbjct: 428 FQEMLIDGGTEPNRVTFLSVLCACSHLGQLEQAWEHFCSMGPDFGVPPAGDHYCCLVDLL 487

Query: 296 GRAGQLNEALELI-ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           GRAG+L EA +L+      E D   W A L AC+++ ++E ++ A  +V +LEP N    
Sbjct: 488 GRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNGDLERSQRAAKRVSELEPENVAGR 547

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
           VLLSN+Y+       + R+R  M+   +KK  G S++E+  RVH FMV D +H + +EIY
Sbjct: 548 VLLSNVYAAKGRRADVARIRNEMKSSGVKKFAGRSWIEINNRVHEFMVSDVSHPRKLEIY 607

Query: 415 RMLDKLENLVQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVM 470
             L++L   ++E     D        + E+ +     HSE+LA+A GII+T PGT + V+
Sbjct: 608 SELERLHREIKEAGYVPDTKMVLRDVDEEKKVQLLGYHSERLAMALGIISTPPGTTLRVV 667

Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KNLR+C DCH   K +S+IV RQ IVRD +RFHHFK G CSC DYW
Sbjct: 668 KNLRVCSDCHAATKFISQIVGRQIIVRDTSRFHHFKDGVCSCGDYW 713



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 96/314 (30%), Positives = 150/314 (47%), Gaps = 2/314 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N L++ Y  N     A +LF  M  QGV  N+VT+   L  C     L LG   + +  
Sbjct: 101 WNILMAAYAQNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALGRKLNELIA 160

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
              L++D  V + L+TMY +C  ++   + FD+ PEK ++ W AMIS YA N   +  LE
Sbjct: 161 SEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNWRTSRALE 220

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG-SNPFLNNALINMY 193
           L R M   G+     T+V +L +CA       G+   Q+  A G   S+  +   L+N+Y
Sbjct: 221 LVRRMDLEGIKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVAGTLVNLY 280

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
            +CG +  AR + D MP +T VSWTA+I  Y  +G+   A+ LF  M   G  P     +
Sbjct: 281 GKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLI 340

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           SV+ +C+  G    G      +++             ++ + G+ G L  A E+ E + +
Sbjct: 341 SVVDSCAVLGTLSLGKRIHARIRSSPSFSQSLMLLNAVITMYGKCGNLELAREVFECVPL 400

Query: 314 EPDGAV-WGALLGA 326
                V W A++ A
Sbjct: 401 RTRSVVTWTAMIRA 414



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 122/250 (48%), Gaps = 3/250 (1%)

Query: 78  LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYR 137
           LD +  +GN L+  Y K GS+   +  F ++      +WN +++ YAQNG       L+ 
Sbjct: 63  LDRNTFLGNVLVDAYSKHGSLHGAQLAFGRITLHNAHSWNILMAAYAQNGHPRGAATLFH 122

Query: 138 EMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG 197
            M S GV P+AVT    L +C      ++G ++ + I +     +  + ++LI MY RC 
Sbjct: 123 WMCSQGVRPNAVTLSTALLACTAARNLALGRKLNELIASEALEIDSHVESSLITMYGRCR 182

Query: 198 NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257
            +++A   FD  P K VV WTA+I  Y  +     A++L   M   GI+     +VS+L 
Sbjct: 183 EIEEAERAFDRSPEKDVVCWTAMISAYAHNWRTSRALELVRRMDLEGIKLGLPTYVSLLD 242

Query: 258 ACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYT-CMVDLLGRAGQLNEALELIESMLVEPD 316
           AC+       G+  F+      GL          +V+L G+ G++++A  ++++M V   
Sbjct: 243 ACASTMDLRNGVA-FHQRAAAIGLDRSSTVVAGTLVNLYGKCGRVDDARRVLDAMPVRT- 300

Query: 317 GAVWGALLGA 326
              W A++ A
Sbjct: 301 SVSWTAMIAA 310



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 2/158 (1%)

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
           ++  QI A     N FL N L++ Y++ G+L  A+  F  +      SW  ++  Y  +G
Sbjct: 53  KLHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFGRITLHNAHSWNILMAAYAQNG 112

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY 288
           H   A  LF  M   G+RP+     + L AC+ A     G +    + ++  L+      
Sbjct: 113 HPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALGRKLNELIASE-ALEIDSHVE 171

Query: 289 TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
           + ++ + GR  ++ EA    +    E D   W A++ A
Sbjct: 172 SSLITMYGRCREIEEAERAFDRS-PEKDVVCWTAMISA 208


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/513 (40%), Positives = 305/513 (59%), Gaps = 20/513 (3%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T  +N +ISG+  N ++ +A  LF  M  +    NSV+   ++   V+ G L L      
Sbjct: 99  TASWNTMISGFSQNGMMDQARELFLVMPVR----NSVSWNAMISGYVESGDLDLAKQLFE 154

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           +     +         ++T ++K G ++   K F+++P K L+TWNAMI+GY +N  A +
Sbjct: 155 VAPVRSV----VAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAEN 210

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L+L++ M   G  P+  +   VL  C++L A  +G +V Q I  +    N     +L++
Sbjct: 211 GLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLS 270

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY +CG+L+ A  +F  MP+K VV+W A+I GY  HG GE A+ LFD+M   G++PD   
Sbjct: 271 MYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWIT 330

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           FV+VLSAC+HAG  D G+EYF  M   YG++  P+HYTC+VDLLGR G+L EA++LI+ M
Sbjct: 331 FVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKM 390

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
             +P  A++G LLGAC+IHKN+ELAE A   ++ L+P +   YV L+N+Y+     D + 
Sbjct: 391 PFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNLDPESAAGYVQLANVYAAMNRWDHVA 450

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ------ 425
            VR  M++ ++ K PGYS++E+K  VH F  GDR H +   I+  L++LE  ++      
Sbjct: 451 MVRRSMKDNKVIKTPGYSWIEVKSVVHEFRSGDRIHPELAFIHEKLNELERKMRLAGYVP 510

Query: 426 --EHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFI 483
             E+      +++  +  L     HSEKLAIA+G+I    GT I V KNLR+CGDCH   
Sbjct: 511 DLEYALHDVGEEQKKQILLR----HSEKLAIAYGLIRMPLGTPIRVFKNLRVCGDCHSAT 566

Query: 484 KLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K +S I  R  IVRD TRFHHF+ G CSC DYW
Sbjct: 567 KYISAIEGRVIIVRDTTRFHHFRQGECSCGDYW 599



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 149/316 (47%), Gaps = 16/316 (5%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N ++  Y+    V+  R  FDQ+P K   +WN MISG++QNG+     EL+  M      
Sbjct: 72  NIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVMP----V 127

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
            ++V++  ++S     G     L++ +Q+       +     A+I  + + G ++ A   
Sbjct: 128 RNSVSWNAMISGYVESG----DLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKY 183

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           F+ MP K +V+W A+I GY  +   E  ++LF  M++SG RP+ ++  SVL  CS+    
Sbjct: 184 FEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSAL 243

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
             G +  + +  K  +       T ++ +  + G L +A +L   M  + D   W A++ 
Sbjct: 244 KLGKQ-VHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVM-PQKDVVTWNAMIS 301

Query: 326 ACKIHKNVELAELAFGKVIKLEPMNTGY--YVLLSNIYSEARNLD-GIMRVRMMMRERRL 382
               H   E A   F K ++ E M   +  +V + +  + A  +D GI     M+R+  +
Sbjct: 302 GYAQHGAGEKALYLFDK-MRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGV 360

Query: 383 KKDPGY--SYVELKGR 396
           +  P +    V+L GR
Sbjct: 361 EAKPDHYTCVVDLLGR 376



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 16/180 (8%)

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYG-IHGHGEVAVQLFD 238
            SN   +N +I  + R G+L  A  +F+ M  KT V+W +++ GY    G  +VA QLFD
Sbjct: 2   SSNVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFD 61

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
            + +    PD  ++  +L+   H    +    +F  M  K         +  M+    + 
Sbjct: 62  RIPE----PDIFSYNIMLACYLHNADVESARLFFDQMPVK-----DTASWNTMISGFSQN 112

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF-----GKVIKLEPMNTGY 353
           G +++A EL   M V  +   W A++       +++LA+  F       V+    M TG+
Sbjct: 113 GMMDQARELFLVMPVR-NSVSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGF 171


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/526 (40%), Positives = 306/526 (58%), Gaps = 12/526 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICV-- 58
           VFDE+ + T     +NAL     +     E + L+ +M   G+  +  T   +L  CV  
Sbjct: 135 VFDETRERT--IYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVS 192

Query: 59  --DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
                 L  G   H   ++ G + +  V   L+ +Y K GSV Y   +F  +P K  ++W
Sbjct: 193 ELSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSW 252

Query: 117 NAMISGYAQNGLATHVLELYREM--KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
           +AMI+ +A+N +    LEL++ M  ++    P++VT V VL +CA L A   G  +   I
Sbjct: 253 SAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYI 312

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
              G  S   + NALI MY RCG +   + +FD M  + VVSW ++I  YG+HG G+ A+
Sbjct: 313 LRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAI 372

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
           Q+F+ M+  G  P   +F++VL ACSHAGL ++G   F  M +KY + PG EHY CMVDL
Sbjct: 373 QIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDL 432

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           LGRA +L+EA++LIE M  EP   VWG+LLG+C+IH NVELAE A   + +LEP N G Y
Sbjct: 433 LGRANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLFELEPRNAGNY 492

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
           VLL++IY+EA+       V  ++  R L+K PG S++E+K +V+ F+  D ++ Q  EI+
Sbjct: 493 VLLADIYAEAKMWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIH 552

Query: 415 RMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVM 470
            +L KL N ++      +++      + EE       HSEKLA+AFG+INT  G  I + 
Sbjct: 553 ALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSEKLAVAFGLINTVKGETIRIR 612

Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KNLR+C DCH   K +SK  +R+ +VRD  RFHHFK G CSC DYW
Sbjct: 613 KNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFKDGVCSCGDYW 658



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 156/349 (44%), Gaps = 33/349 (9%)

Query: 13  VCYNALISGYVLNSLVS--EAVSLFGKMREQGVEI-----------NSVTMLCLLP---- 55
           +CYN+ +S  V  S VS   + +L   ++    ++            ++ +LC  P    
Sbjct: 19  LCYNSHVSSRVPVSFVSLNPSANLMNDIKGNNNQLIQSLCKGGNLKQAIHLLCCEPNPTQ 78

Query: 56  --------ICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQ 107
                    C     L  G+  H   V  G D D  +   L+ MY + GS+D  RK+FD+
Sbjct: 79  RTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDE 138

Query: 108 VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA----HLGA 163
             E+ +  WNA+    A  G    +L+LY +M  +G+  D  T+  VL +C      +  
Sbjct: 139 TRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSP 198

Query: 164 HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGG 223
              G E+   I  +G+ +N  +   L+++YA+ G++  A ++F  MP K  VSW+A+I  
Sbjct: 199 LQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIAC 258

Query: 224 YGIHGHGEVAVQLFDEMLKSG--IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281
           +  +     A++LF  M+       P+    V+VL AC+     ++G +  +G   + GL
Sbjct: 259 FAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQG-KLIHGYILRRGL 317

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
                    ++ + GR G++     + ++M    D   W +L+    +H
Sbjct: 318 DSILPVLNALITMYGRCGEILMGQRVFDNM-KNRDVVSWNSLISIYGMH 365



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 104/210 (49%), Gaps = 7/210 (3%)

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P   TF  ++ SCA   + S GL+V +++ ++GF  +PFL   LINMY   G++ +AR +
Sbjct: 76  PTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKV 135

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           FD    +T+  W A+     + G G+  + L+ +M   GI  D   +  VL AC  + L+
Sbjct: 136 FDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELS 195

Query: 266 ----DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWG 321
                KG E  +    ++G +      T ++D+  + G ++ A  +  +M  + +   W 
Sbjct: 196 VSPLQKGKE-IHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTK-NFVSWS 253

Query: 322 ALLGACKIHKNVELAELAFGKVIKLEPMNT 351
           A++ AC     + +  L   +++ LE  ++
Sbjct: 254 AMI-ACFAKNEMPMKALELFQLMMLEAHDS 282


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/493 (41%), Positives = 295/493 (59%), Gaps = 13/493 (2%)

Query: 30  EAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLM 89
           EA+     M   GV  N+ T   +L  C  PG L      H   VK GLD D  V + L+
Sbjct: 165 EALRFLVAMWRDGVAPNAYTFSSVLGACGTPGVL---AALHASTVKVGLDSDVFVRSSLI 221

Query: 90  TMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
             Y+K G +D GR++FD++  + L+ WN++I+G+AQ+G     +EL+  MK  G   +  
Sbjct: 222 DAYMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQG 281

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQAN--GFGSNPFLNNALINMYARCGNLKKARAIFD 207
           T   VL +C  +    V LE  +Q+ A+   +  +  L+NAL++MY +CG+L+ A A+F 
Sbjct: 282 TLTSVLRACTGM----VMLEAGRQVHAHVLKYERDLILHNALLDMYCKCGSLEDAEALFH 337

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            MP++ V+SW+ +I G   +G    A+++FD M   G+ P+    V VL ACSHAGL + 
Sbjct: 338 RMPQRDVISWSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVED 397

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           G  YF  MK  +G+QP  EH+ CMVDLLGRAG+L+EA+E I  M +EPD  +W  LLGAC
Sbjct: 398 GWYYFRSMKKLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGAC 457

Query: 328 KIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPG 387
           ++HK+  LA  A  +++KLEP + G  VLLSN Y++ R      +    MR+R +KK+PG
Sbjct: 458 RMHKSGNLAAYAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKSWKAMRDRGMKKEPG 517

Query: 388 YSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD---QKNSEEHLND 444
            S++EL+  VH+F+ GD +H  +  I + L++L   +       +++   Q  + E   D
Sbjct: 518 RSWIELEKHVHVFIAGDLSHPCSDTIVQELNRLIGRISALGYVPQTEFVLQDLAIEQKED 577

Query: 445 -TEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFH 503
             + HSEK+AIAFG ++   G  I +MKNLRICGDCH F KLVSK   R  I+RD  RFH
Sbjct: 578 LLKYHSEKMAIAFGTMHAVGGKPIRIMKNLRICGDCHAFAKLVSKSEGRMIIIRDPVRFH 637

Query: 504 HFKSGFCSCKDYW 516
           HF+ G CSC DYW
Sbjct: 638 HFQDGACSCGDYW 650



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 119/243 (48%), Gaps = 10/243 (4%)

Query: 84  VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ-NGLATHVLELYREMKSL 142
           V N L++MY K G +D   +LFD++PE+ ++TW  +++  A  +G     L     M   
Sbjct: 117 VSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRD 176

Query: 143 GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202
           GV P+A TF  VL +C   G   V   +       G  S+ F+ ++LI+ Y + G+L   
Sbjct: 177 GVAPNAYTFSSVLGAC---GTPGVLAALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGG 233

Query: 203 RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262
           R +FD M  + +V W +II G+   G G  A++LF  M  +G   +     SVL AC+  
Sbjct: 234 RRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGM 293

Query: 263 GLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWG 321
            + + G + + + +K +  L      +  ++D+  + G L +A  L   M  + D   W 
Sbjct: 294 VMLEAGRQVHAHVLKYERDLI----LHNALLDMYCKCGSLEDAEALFHRM-PQRDVISWS 348

Query: 322 ALL 324
            ++
Sbjct: 349 TMI 351



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 14/188 (7%)

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG--------FGSNPFLNNALINMYARCGN 198
           D V+   ++  C   G    G  + + ++A+G         G   F++N+L++MYA+ G 
Sbjct: 71  DPVSLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGL 130

Query: 199 LKKARAIFDGMPRKTVVSWTAIIGGYG-IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257
           L  A  +FD MP + VV+WT ++       G  E A++    M + G+ P+   F SVL 
Sbjct: 131 LDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSVLG 190

Query: 258 ACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDG 317
           AC   G+    L   +    K GL       + ++D   + G L+    + + M+   D 
Sbjct: 191 ACGTPGV----LAALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTR-DL 245

Query: 318 AVWGALLG 325
            VW +++ 
Sbjct: 246 VVWNSIIA 253



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 85/210 (40%), Gaps = 39/210 (18%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + ++ +ISG   N   +EA+ +F  M+ +GV  N +TM+ +L  C   G +  G      
Sbjct: 345 ISWSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRS 404

Query: 73  CVK-FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             K FG+  +    NC++ +  + G +D                                
Sbjct: 405 MKKLFGIQPEREHHNCMVDLLGRAGKLD-------------------------------E 433

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI---QANGFGSNPFLNNA 188
            +E  R+M    + PDAV +  +L +C    + ++     ++I   + +  G+   L+N 
Sbjct: 434 AVEFIRDMN---LEPDAVIWRTLLGACRMHKSGNLAAYAAREILKLEPDDQGARVLLSNT 490

Query: 189 LINMYARCGNLKKARAIFD-GMPRKTVVSW 217
             ++       K  +A+ D GM ++   SW
Sbjct: 491 YADLRQWTDAEKSWKAMRDRGMKKEPGRSW 520


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/508 (37%), Positives = 306/508 (60%), Gaps = 5/508 (0%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
            V + A+I+ Y    L  +   L  +M   G++ +   +  +L        L  G   H  
Sbjct: 578  VSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGY 637

Query: 73   CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             ++ G++    V N LM MYV C +++  R +FD V  K +I+WN +I GY++N  A   
Sbjct: 638  AIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANES 697

Query: 133  LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
              L+ +M  L   P+ VT   +L + A + +   G E+       GF  + + +NAL++M
Sbjct: 698  FSLFSDML-LQFKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSYTSNALVDM 756

Query: 193  YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
            Y +CG L  AR +FD + +K ++SWT +I GYG+HG G+ AV LF++M  SG+ PD  +F
Sbjct: 757  YVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASF 816

Query: 253  VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
             ++L AC H+GLT +G ++F  M+ +Y ++P  +HYTC+VDLL   G L EA E IESM 
Sbjct: 817  SAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESMP 876

Query: 313  VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            +EPD ++W +LL  C+IH++V+LAE    +V KLEP NTGYYVLL+NIY+EA   + + +
Sbjct: 877  IEPDSSIWVSLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLLANIYAEAERWEAVKK 936

Query: 373  VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE--HDGT 430
            ++  +  R L+++ G S++E++G+VH+F+  +RNH +   I   LD +   ++E  HD  
Sbjct: 937  LKNKIGGRGLRENTGCSWIEVRGKVHVFIADNRNHPEWNRIAEFLDHVARRMREEGHDPK 996

Query: 431  KRSDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
            K+     + + ++D  +  HS KLA+ FG+++   G  I V KN ++C  CH   K +SK
Sbjct: 997  KKYSLMGANDAVHDEALCGHSSKLAVTFGVLHLPEGRPIRVTKNSKVCSHCHEAAKFISK 1056

Query: 489  IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            + +R+ I+RD++RFHHF+ G CSC+ ++
Sbjct: 1057 MCNREIILRDSSRFHHFEGGRCSCRGHF 1084



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 117/398 (29%), Positives = 179/398 (44%), Gaps = 50/398 (12%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T+ +N++ISG   N L SEA+ LF +M  QG E++S T+L +LP C    Y ++G   H 
Sbjct: 476 TISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHG 535

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             VK GL  + S+ N L+ MY  C       ++F  + +K +++W AMI+ Y + GL   
Sbjct: 536 YSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDK 595

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
           V  L +EM   G+ PD      VL   A   +   G  V      NG      + NAL+ 
Sbjct: 596 VAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALME 655

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY  C N+++AR +FD +  K ++SW  +IGGY  +     +  LF +ML    +P+   
Sbjct: 656 MYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDMLLQ-FKPNTVT 714

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG--PEHYT--CMVDLLGRAGQL------ 301
              +L A +     ++G E      + Y L+ G   + YT   +VD+  + G L      
Sbjct: 715 MTCILPAVASISSLERGREI-----HAYALRRGFLEDSYTSNALVDMYVKCGALLVARVL 769

Query: 302 -------------------------NEALELIESML---VEPDGAVWGALLGACKIHKNV 333
                                     +A+ L E M    VEPD A + A+L AC  H  +
Sbjct: 770 FDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYAC-CHSGL 828

Query: 334 ELAELAF----GKVIKLEPMNTGYYVLLSNIYSEARNL 367
                 F     K  K+EP    +Y  + ++ S   NL
Sbjct: 829 TAEGWKFFNAMRKEYKIEP-KLKHYTCIVDLLSHTGNL 865



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/354 (29%), Positives = 165/354 (46%), Gaps = 23/354 (6%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE          + +L+S Y       E VSLF +M+  GV  ++  + C+L      
Sbjct: 152 VFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASL 211

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G +  G   H +  K GL    +V N L+ +Y +CG ++   ++FD +  +  I+WN+ I
Sbjct: 212 GSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTI 271

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF- 179
           SGY  NG     ++L+ +M S G    +VT + VL +CA LG   VG  V      +G  
Sbjct: 272 SGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLL 331

Query: 180 --------GSNPFLNNALINMYARCGNLKKARAIFDGMPRK-TVVSWTAIIGGYGIHGHG 230
                   G +  L + L+ MY +CG++  AR +FD MP K  V  W  I+GGY      
Sbjct: 332 WDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEF 391

Query: 231 EVAVQLFDEMLKSGIRPDGTAFVSVLS-----ACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
           E ++ LF++M + GI PD  A   +L      +C+  GL   G    Y +K  +G Q   
Sbjct: 392 EESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHG----YLVKLGFGTQCAV 447

Query: 286 EHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHK-NVELAEL 338
                ++    ++  ++ A+ + + M    D   W +++  C  +  N E  EL
Sbjct: 448 --CNALISFYAKSNMIDNAVLVFDRM-PHQDTISWNSVISGCTSNGLNSEAIEL 498



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 149/328 (45%), Gaps = 9/328 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD      ++ V +N ++ GY   +   E++ LF +M E G+  +   + CLL      
Sbjct: 365 VFDAMPSKGNVHV-WNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCL 423

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
                G+  H   VK G     +V N L++ Y K   +D    +FD++P +  I+WN++I
Sbjct: 424 SCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVI 483

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SG   NGL +  +EL+  M   G   D+ T + VL +CA      VG  V       G  
Sbjct: 484 SGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLI 543

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
               L NAL++MY+ C +      IF  M +K VVSWTA+I  Y   G  +    L  EM
Sbjct: 544 GETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEM 603

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEY---FYGMKNKYGLQPGPEHYTCMVDLLGR 297
           +  GI+PD  A  SVL    H    D+ L+     +G   + G++        ++++   
Sbjct: 604 VLDGIKPDVFAVTSVL----HGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVN 659

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLG 325
              + EA  L+   +   D   W  L+G
Sbjct: 660 CRNMEEA-RLVFDHVTNKDIISWNTLIG 686



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 132/274 (48%), Gaps = 12/274 (4%)

Query: 84  VGNCLMTMYVKCGSVDYGRKLFDQVPEK--GLITWNAMISGYAQNGLATHVLELYREMKS 141
           +G  L+  Y+KCG +   R +FD++P +   +  W +++S YA+ G     + L+R+M+ 
Sbjct: 132 LGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQC 191

Query: 142 LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKK 201
            GV PDA     VL   A LG+ + G  +   ++  G G    + NALI +Y+RCG ++ 
Sbjct: 192 CGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMED 251

Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261
           A  +FD M  +  +SW + I GY  +G  + AV LF +M   G        +SVL AC+ 
Sbjct: 252 AMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAE 311

Query: 262 AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD-LLG--------RAGQLNEALELIESML 312
            G    G +  +G   K GL    E     +D  LG        + G +  A  + ++M 
Sbjct: 312 LGFELVG-KVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMP 370

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
            + +  VW  ++G        E + L F ++ +L
Sbjct: 371 SKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHEL 404


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/519 (38%), Positives = 301/519 (57%), Gaps = 21/519 (4%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVE-----INSVTMLCLLPICVDPGYLWLGM 67
           + +N++IS    +SL  E+V+LF  +  +G++     + S+T+      C     L  G 
Sbjct: 353 ISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGK 412

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
             H   +K G D D  V + ++ MY+KCG +     +F+ +     + W +MISG   NG
Sbjct: 413 QIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNG 472

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVL--SSCAHLGAHSVGLEVEQQIQANGFG----S 181
                L +Y  M+   V PD  TF  ++  SSC         LE  +Q+ AN       S
Sbjct: 473 NEDQALRIYHRMRQSRVMPDEYTFATLIKASSCV------TALEQGRQLHANVIKLDCVS 526

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           +PF+  +L++MYA+CGN++ A  +F  M  + +  W A++ G   HG+ E AV LF  M 
Sbjct: 527 DPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMK 586

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301
             GI PD  +F+ +LSACSHAGLT +  EY + M N YG++P  EHY+C+VD LGRAG +
Sbjct: 587 SHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLV 646

Query: 302 NEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY 361
            EA ++IE+M  +   ++  ALLGAC+I  +VE  +    ++  LEP ++  YVLLSNIY
Sbjct: 647 QEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIY 706

Query: 362 SEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLE 421
           + A   D +   R MM+ + +KKDPG+S++++K  +HLF+V DR+H Q   IY  ++++ 
Sbjct: 707 AAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMM 766

Query: 422 NLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICG 477
             ++E      ++        EE       HSEKLAIA+G+I+T   T I V+KNLR+CG
Sbjct: 767 KTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCG 826

Query: 478 DCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           DCH  IK +SK+ +R+ ++RDA RFHHF+ G CSC DYW
Sbjct: 827 DCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 865



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/281 (31%), Positives = 137/281 (48%), Gaps = 7/281 (2%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           LL   +    L LG C H   V  G   D  + N L+TMY KCGS+   R++FD  PE+ 
Sbjct: 83  LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 142

Query: 113 LITWNAMISGYA-----QNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVG 167
           L+TWNA++  YA      +G A   L L+R +++       +T   VL  C + G     
Sbjct: 143 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 202

Query: 168 LEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH 227
             V       G   + F++ AL+N+Y++CG ++ AR +FD M  + VV W  ++ GY   
Sbjct: 203 EGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQL 262

Query: 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL-EYFYGMKNKYGLQPGPE 286
           G  + A QLF E  +SG+RPD  +   +L+ C  AG  D  L +  +G+  K GL     
Sbjct: 263 GLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVS 322

Query: 287 HYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
               +V++  + G    A E+   M    D   W +++ +C
Sbjct: 323 VANSLVNMYSKMGCAYFAREVFNDM-KHLDLISWNSMISSC 362



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 165/350 (47%), Gaps = 20/350 (5%)

Query: 1   VFDESIKSTHLTVCYNALISGYVL-----NSLVSEAVSLFGKMREQGVEINSVTMLCLLP 55
           VFD + +   +T  +NA++  Y       +    E + LF  +R        +T+  +L 
Sbjct: 134 VFDTTPERDLVT--WNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLK 191

Query: 56  ICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT 115
           +C++ G LW     H   +K GL+ D  V   L+ +Y KCG +   R LFD + E+ ++ 
Sbjct: 192 LCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVL 251

Query: 116 WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175
           WN M+ GY Q GL     +L+ E    G+ PD  +   +L+ C  L A +  LE+ +Q+ 
Sbjct: 252 WNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGC--LWAGTDDLELGKQVH 309

Query: 176 A----NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGE 231
                +G  S+  + N+L+NMY++ G    AR +F+ M    ++SW ++I         E
Sbjct: 310 GIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEE 369

Query: 232 VAVQLFDEMLKSGIRPDGTAFVSVL-----SACSHAGLTDKGLEYFYGMKNKYGLQPGPE 286
            +V LF ++L  G++PD     S+       AC    L D+G +  +    K G      
Sbjct: 370 ESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQ-IHAHAIKAGFDSDLH 428

Query: 287 HYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELA 336
             + ++D+  + G +  A  ++ + +  PD   W +++  C  + N + A
Sbjct: 429 VNSGILDMYIKCGDMVNA-GIVFNYISAPDDVAWTSMISGCVDNGNEDQA 477


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/517 (37%), Positives = 302/517 (58%), Gaps = 22/517 (4%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWL---GMCC 69
           V +NA+++GY  +    + + LF  M +QG   +  T+  +   C   G+L+    G   
Sbjct: 483 VAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTC---GFLFAINQGKQV 539

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   +K G DLD  V + ++ MYVKCG +   +  FD +P    + W  MISG  +NG  
Sbjct: 540 HAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEE 599

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN----PFL 185
                ++ +M+ +GV PD  T   +  + + L A    LE  +QI AN    N    PF+
Sbjct: 600 ERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTA----LEQGRQIHANALKLNCTNDPFV 655

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
             +L++MYA+CG++  A  +F  +    + +W A++ G   HG G+  +QLF +M   GI
Sbjct: 656 GTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGI 715

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
           +PD   F+ VLSACSH+GL  +  ++   M   YG++P  EHY+C+ D LGRAG + +A 
Sbjct: 716 KPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAE 775

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR 365
            LIESM +E   +++  LL AC++  + E  +    K+++LEP+++  YVLLSN+Y+ A 
Sbjct: 776 NLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAAS 835

Query: 366 NLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD------K 419
             D +   R MM+  ++KKDPG+S++E+K ++H+F+V DR++ QT  IYR +       K
Sbjct: 836 KWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIK 895

Query: 420 LENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDC 479
            E  V E D T    ++  EE       HSEKLA+AFG+++T P T I V+KNLR+CGDC
Sbjct: 896 QEGYVPETDFTLVDVEE--EEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDC 953

Query: 480 HLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           H  +K ++K+ +R+ ++RDA RFH FK G CSC DYW
Sbjct: 954 HNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 157/317 (49%), Gaps = 12/317 (3%)

Query: 16  NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVK 75
           N  +S Y+ +   S  +  F  M E  VE + VT + +L   V    L LG   HC+ +K
Sbjct: 284 NKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALK 343

Query: 76  FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLEL 135
            GLDL  +V N L+ MY K     + R +FD + E+ LI+WN++I+G AQNGL    + L
Sbjct: 344 LGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCL 403

Query: 136 YREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG----SNPFLNNALIN 191
           + ++   G+ PD  T   VL + + L     GL + +Q+  +       S+ F++ ALI+
Sbjct: 404 FMQLLRCGLKPDQYTMTSVLKAASSLPE---GLSLSKQVHVHAIKINNVSDSFVSTALID 460

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
            Y+R   +K+A  +F+      +V+W A++ GY     G   ++LF  M K G R D   
Sbjct: 461 AYSRNRCMKEAEILFE-RHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFT 519

Query: 252 FVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
             +V   C      ++G + + Y +K+ Y L       + ++D+  + G ++ A    +S
Sbjct: 520 LATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVS--SGILDMYVKCGDMSAAQFAFDS 577

Query: 311 MLVEPDGAVWGALLGAC 327
           + V PD   W  ++  C
Sbjct: 578 IPV-PDDVAWTTMISGC 593



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 145/316 (45%), Gaps = 10/316 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD-PGYLWLGMCCHC 71
           + +N++I+G   N L  EAV LF ++   G++ +  TM  +L      P  L L    H 
Sbjct: 382 ISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHV 441

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K     D  V   L+  Y +   +     LF++     L+ WNAM++GY Q+     
Sbjct: 442 HAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQSHDGHK 500

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L+L+  M   G   D  T   V  +C  L A + G +V      +G+  + ++++ +++
Sbjct: 501 TLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILD 560

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY +CG++  A+  FD +P    V+WT +I G   +G  E A  +F +M   G+ PD   
Sbjct: 561 MYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFT 620

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA---LELI 308
             ++  A S     ++G +  +    K      P   T +VD+  + G +++A    + I
Sbjct: 621 IATLAKASSCLTALEQGRQ-IHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRI 679

Query: 309 ESMLVEPDGAVWGALL 324
           E M +      W A+L
Sbjct: 680 EMMNI----TAWNAML 691



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 96/191 (50%), Gaps = 5/191 (2%)

Query: 63  LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISG 122
           L LG C H   + F  + +  + N L++MY KCGS+ Y R++FD++P++ L++WN++++ 
Sbjct: 55  LMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAA 114

Query: 123 YAQNGLAT-----HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
           YAQ+             L+R ++   V    +T   +L  C H G               
Sbjct: 115 YAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKI 174

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
           G   + F+  AL+N+Y + G +K+ + +F+ MP + VV W  ++  Y   G  E A+ L 
Sbjct: 175 GLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLS 234

Query: 238 DEMLKSGIRPD 248
                SG+ P+
Sbjct: 235 SAFHSSGLNPN 245



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 75/144 (52%), Gaps = 5/144 (3%)

Query: 13  VCYNALISGYVLNSL-----VSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           V +N++++ Y  +S      + +A  LF  +R+  V  + +T+  +L +C+  GY+W   
Sbjct: 106 VSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASE 165

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
             H    K GLD D  V   L+ +Y+K G V  G+ LF+++P + ++ WN M+  Y + G
Sbjct: 166 SFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMG 225

Query: 128 LATHVLELYREMKSLGVCPDAVTF 151
                ++L     S G+ P+ +T 
Sbjct: 226 FKEEAIDLSSAFHSSGLNPNEITL 249



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 104/248 (41%), Gaps = 32/248 (12%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N ++  Y+      EA+ L       G+  N +T+  L  I  D             
Sbjct: 212 VLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDS----------- 260

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               G    F+ GN                   D      +I  N  +S Y  +G  + +
Sbjct: 261 --DAGQVKSFANGN-------------------DASSVSEIIFRNKGLSEYLHSGQYSAL 299

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+ + +M    V  D VTF+ +L++   + + ++G +V       G      ++N+LINM
Sbjct: 300 LKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINM 359

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +      AR +FD M  + ++SW ++I G   +G    AV LF ++L+ G++PD    
Sbjct: 360 YCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTM 419

Query: 253 VSVLSACS 260
            SVL A S
Sbjct: 420 TSVLKAAS 427


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/520 (39%), Positives = 303/520 (58%), Gaps = 6/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE       T  +NA+++G   + L  E++  F  MR +G++ +   +  L   C   
Sbjct: 130 LFDEMPARNVAT--WNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFRCCAGL 187

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             +  G   H   V+ GLD D  VG+ L  MY++CG +  G      +P   +++ N  I
Sbjct: 188 RDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNIVSCNTTI 247

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SG  QNG A   LE +  M+  GV  +AVTFV  ++SC+ L A + G ++       G  
Sbjct: 248 SGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHALAIKTGVD 307

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
               +  +L++MY+RCG L  +  +        +V  +A+I  YG HGHG+ AV LF +M
Sbjct: 308 KVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQKAVGLFKQM 367

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           + +G  P+   F+++L ACSH+GL D+G+  F  M   YGLQP  +HYTC+VDLLGR+G 
Sbjct: 368 MAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIVDLLGRSGC 427

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           LNEA +LI SM V+PDG +W  LL ACK  K  ++AE    +VI+L+P ++  YVLLSNI
Sbjct: 428 LNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELDPHDSASYVLLSNI 487

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
            + +   + + +VR  MRE+ ++K+PG S+VELKG++H F  GD +H +  EI   L+++
Sbjct: 488 RATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESHSRQREIVECLEEM 547

Query: 421 ENLVQE----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
              +++     D +        EE       HSEKLAIAF  ++   G  I VMKNLR+C
Sbjct: 548 MTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLSLPEGVPIRVMKNLRVC 607

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DCH+ IKL+SK++ R+ +VRD +RFHHFK G CSC DYW
Sbjct: 608 DDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 647



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 129/277 (46%), Gaps = 10/277 (3%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+  YVK G ++  RKLFD++P + + TWNAM++G   +GL    L  +  M+  G+ 
Sbjct: 112 NILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQ 171

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           PD      +   CA L     G +V   +  +G   +  + ++L +MY RCG L+   A 
Sbjct: 172 PDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAA 231

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
              +P   +VS    I G   +G  E A++ F  M  +G+  +   FVS +++CS     
Sbjct: 232 LRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAAL 291

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGA---VWGA 322
            +G +  + +  K G+       T +V +  R G L ++    E + +E  G    +  A
Sbjct: 292 AQG-QQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDS----ERVCLEYSGTDLVLCSA 346

Query: 323 LLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLL 357
           ++ A   H + + A   F +++    EP    +  LL
Sbjct: 347 MISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLL 383



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 61/102 (59%), Gaps = 5/102 (4%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           + F  N L+  YA  G+   AR +F+ +P++ V+SW  +IGGY  +G  E A +LFDEM 
Sbjct: 76  DRFTANHLLLAYADLGDFPTARGLFERIPKRNVMSWNILIGGYVKNGDLETARKLFDEMP 135

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP 283
              +      + ++++  +++GL ++ L +F+ M+ + G+QP
Sbjct: 136 ARNV----ATWNAMVAGLTNSGLNEESLGFFFAMRRE-GMQP 172


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/543 (39%), Positives = 301/543 (55%), Gaps = 39/543 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N L+SG   +    +AV+   +M  +G   ++  + C L    D   + +G   H  
Sbjct: 119 ITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGY 178

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFD---------------------QVPEK 111
            VK G  LD  V   L+ MY KCG  D   ++F                      QV E 
Sbjct: 179 VVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEA 238

Query: 112 --------------GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
                          +++W ++++   QNG     ++L+R M+S+GV P++VT   VL +
Sbjct: 239 LLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPA 298

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
            A++ A   G          GF  + ++ +AL++MYA+CG  + AR IFD MP + VVSW
Sbjct: 299 FANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSW 358

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
            A+IGGY +HG    AVQLF  M K   +PD   F  VL ACS AGLT++G  YF  M+ 
Sbjct: 359 NAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQ 418

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
            +G+ P  EHY CMV LLGR+G+L+EA +LI  M  EPD  +WG+LLG+C+++ NV LAE
Sbjct: 419 GHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLLAE 478

Query: 338 LAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRV 397
           +A  K+ +LEP N G YVLLSNIY+  +  DG+ RVR  M+   LKK+ G S++E+K +V
Sbjct: 479 VAAEKLFQLEPGNAGNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIKNKV 538

Query: 398 HLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLA 453
           H+ + GD +H     I   L++L   +         D        +E  N   VHSEKLA
Sbjct: 539 HMLLAGDNSHPMMTAITEKLNQLTIEMNRLGFAPSRDFVLHDVEEQEKDNILAVHSEKLA 598

Query: 454 IAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCK 513
           +A G+I+T PGT + V+KNLRICGDCH  +K +S    R+  VRD  RFHHFK G CSC 
Sbjct: 599 VALGLISTRPGTPLRVIKNLRICGDCHEAMKFISSFEQREISVRDTNRFHHFKDGKCSCG 658

Query: 514 DYW 516
           DYW
Sbjct: 659 DYW 661



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 108/272 (39%), Gaps = 36/272 (13%)

Query: 65  LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL----------- 113
           L    H   V  GL  D  V + L+  Y++ G+    R +FD++PEK +           
Sbjct: 35  LARALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYS 94

Query: 114 ------------------------ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
                                   ITWN ++SG  ++G A   +     M S G  PDA 
Sbjct: 95  ARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDAT 154

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
                LS+   +   SVG +V   +   G   +  +  ALI+MY +CG   +   +F   
Sbjct: 155 GVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHES 214

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
               V S  A++ G   +     A+ LF E +  G+  +  ++ S+++ C   G   + +
Sbjct: 215 SHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAV 274

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301
           + F  M++  G++P      C++        L
Sbjct: 275 DLFRTMQS-IGVEPNSVTIPCVLPAFANVAAL 305



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 4/167 (2%)

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
           +H   LY  ++ +   PD       L SC    A  +   +      +G   +PF+ ++L
Sbjct: 2   SHSNSLYHFLRHVSFPPDPHLLPSALKSCP---AQPLARALHAAAVVSGLAEDPFVASSL 58

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++ Y R G    AR++FD MP K VV W+A+I GY   G  E A  L ++M  +G+ P+ 
Sbjct: 59  LHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNV 118

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
             +  ++S  + +G     +     M ++ G  P     +C +  +G
Sbjct: 119 ITWNGLVSGLNRSGRALDAVTALVRMHSE-GFFPDATGVSCALSAVG 164


>gi|358345892|ref|XP_003637008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502943|gb|AES84146.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 217/559 (38%), Positives = 308/559 (55%), Gaps = 72/559 (12%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEI--------------------------- 45
           V +NA+++GY  N    +A+SLFGKMRE+ +E+                           
Sbjct: 106 VTWNAMVTGYSQNGRFEDALSLFGKMREEKIELDVVTWSSVISGYAQRGFGCEAMDVFRQ 165

Query: 46  --------NSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLD-------LDFSVGNCLMT 90
                   N VT++ LL  C   G L  G   HC  VKF L         D +V N L+ 
Sbjct: 166 MCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALID 225

Query: 91  MYVKCGSVDYGRKLFDQV--PEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC--P 146
           MY KC S++  R +FD++   ++ ++TW  MI GYAQ+G A H L+L+ EM  +  C  P
Sbjct: 226 MYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVP 285

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQI-QANGFGSNP-FLNNALINMYARCGNLKKARA 204
           +  T   VL +CA L A   G ++   + + +   S+  F+ N LI+MY++ G++  A+ 
Sbjct: 286 NDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQV 345

Query: 205 IFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL 264
           +FD M ++  VSWT+++ GYG+HG   V               DG  F+ VL ACSH+G+
Sbjct: 346 VFDSMSKRNAVSWTSLLTGYGMHGAALVL--------------DGITFLVVLYACSHSGM 391

Query: 265 TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
            D+G++ FY M   + + PG EHY CM DL GRAG+L EA  LI  M +EP   VW ALL
Sbjct: 392 VDRGIDLFYRMSKDFVVDPGVEHYACMADLFGRAGRLCEATRLINDMSMEPTPVVWIALL 451

Query: 325 GACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKK 384
            AC+ H N ELAE A  K+++L+  N G Y LLSNIY+ AR    + R+R +M+   +KK
Sbjct: 452 SACRTHSNEELAEFAAKKLLELKADNDGTYTLLSNIYANARRWKDVARIRYLMKRTGIKK 511

Query: 385 DPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLND 444
            PG+S+V+ +  +  F VGDR H Q+ +IY   + L +L++         Q N   H  D
Sbjct: 512 RPGWSWVKGRKGMETFYVGDRTHLQSQKIY---ETLADLIKRIKAIGYVPQTNFSLHDVD 568

Query: 445 TE-------VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVR 497
            E        HSEKLA+A+ I+   PG  I + KNLRICGD H  I  +S IV+ + I+R
Sbjct: 569 DEEKGDQLLEHSEKLALAYAILTLPPGAPIRITKNLRICGDFHSAITYISMIVEHEIILR 628

Query: 498 DATRFHHFKSGFCSCKDYW 516
           D++RFH FK+G CSCK YW
Sbjct: 629 DSSRFHQFKNGSCSCKGYW 647



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 179/372 (48%), Gaps = 69/372 (18%)

Query: 7   KSTHLTVCYNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICVDPGYLWL 65
           +S  ++V +N+++S Y    + ++AV LF +M    G+  ++V ++ +LP+    G+L  
Sbjct: 18  RSPLISVSWNSIVSVYSHCFVPNDAVFLFREMTVGYGILPDTVGVVNILPV---SGFL-- 72

Query: 66  GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM------ 119
                           F VGN L+ MY KCG ++   K+F+++  K ++TWNAM      
Sbjct: 73  ---------------GFFVGNALVDMYAKCGKMEDASKVFERMRFKDVVTWNAMVTGYSQ 117

Query: 120 -----------------------------ISGYAQNGLATHVLELYREMKSLGVCPDAVT 150
                                        ISGYAQ G     ++++R+M      P+ VT
Sbjct: 118 NGRFEDALSLFGKMREEKIELDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVT 177

Query: 151 FVGVLSSCAHLGA-------HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
            + +LS+CA +GA       H   ++   + + N    +  + NALI+MYA+C +L+ AR
Sbjct: 178 LMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVAR 237

Query: 204 AIFDGM-PR-KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK--SGIRPDGTAFVSVLSAC 259
           A+FD + P+ + VV+WT +IGGY  HG    A+QLF EM K  + I P+      VL AC
Sbjct: 238 AMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMAC 297

Query: 260 SHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGA 318
           +       G + + Y ++             C++D+  ++G ++ A  + +SM  + +  
Sbjct: 298 ARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSM-SKRNAV 356

Query: 319 VWGALLGACKIH 330
            W +LL    +H
Sbjct: 357 SWTSLLTGYGMH 368



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 120/257 (46%), Gaps = 22/257 (8%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMR--EQGVEINSVTMLCLLPICV 58
           +FDE        V +  +I GY  +   + A+ LF +M   +  +  N  T+ C+L  C 
Sbjct: 239 MFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACA 298

Query: 59  DPGYLWLGMCCHCICVKFG-LDLD-FSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
               L  G   H   ++   +D D   V NCL+ MY K G VD  + +FD + ++  ++W
Sbjct: 299 RLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSW 358

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
            ++++GY  +G A              +  D +TF+ VL +C+H G    G+++  ++  
Sbjct: 359 TSLLTGYGMHGAA--------------LVLDGITFLVVLYACSHSGMVDRGIDLFYRMSK 404

Query: 177 NGFGSNPFLNN--ALINMYARCGNLKKA-RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVA 233
           + F  +P + +   + +++ R G L +A R I D     T V W A++     H + E+A
Sbjct: 405 D-FVVDPGVEHYACMADLFGRAGRLCEATRLINDMSMEPTPVVWIALLSACRTHSNEELA 463

Query: 234 VQLFDEMLKSGIRPDGT 250
                ++L+     DGT
Sbjct: 464 EFAAKKLLELKADNDGT 480


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/507 (38%), Positives = 311/507 (61%), Gaps = 5/507 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N ++ G+V +    EA+  + +M E+GV+ ++ T   LL  C     +  GM  H   +
Sbjct: 99  FNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHIL 158

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K GL+ D  V N L++MY KCG +     +F+Q+ E+ + +W+A+I+ +A  G+ +  L 
Sbjct: 159 KLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLR 218

Query: 135 LYREMKSLGVC-PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
           L  +M + G    +    V VLS+C HLGA  +G  V   +  N  G N  +  +LI MY
Sbjct: 219 LLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMY 278

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
            +CG+L K   +F  M +K  +S++ +I G  +HG+G   +++F EML+ G+ PD   +V
Sbjct: 279 LKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYV 338

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
            VL+ACSHAGL  +GL+ F  MK ++G++P  +HY CMVDL+GRAG+++EALELI+SM +
Sbjct: 339 GVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPM 398

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
           EP+  +W +LL A K+H N++  E+A  ++ KL+      YV+LSN+Y++A+  + + + 
Sbjct: 399 EPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVAKT 458

Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ----EHDG 429
           R  M  + L + PG+S VE+K ++H F+  D  H Q+  +Y ML ++E  ++      D 
Sbjct: 459 RTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYSPDT 518

Query: 430 TKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKI 489
           T+     + EE       HS+KLAIA+ +I+TS G+ I +++NLR+C DCH + KL+S I
Sbjct: 519 TQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPIRIVRNLRMCNDCHTYTKLISII 578

Query: 490 VDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DR+  VRD  RFHHFK G CSC+DYW
Sbjct: 579 FDREITVRDRHRFHHFKDGACSCRDYW 605


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/506 (36%), Positives = 292/506 (57%), Gaps = 4/506 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NA++ G+ ++    EA+ LF  M E+G + + +T             L  G   H + +
Sbjct: 468 WNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVI 527

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K     D  V + ++ MY+KCG +   RK+F+Q+P    + W  +ISG  +NG     L 
Sbjct: 528 KMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALF 587

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
            Y +M+  GV PD  TF  ++ +C+ L A   G ++   I       +PF+  +L++MYA
Sbjct: 588 TYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYA 647

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CGN++ A  +F  M  ++V  W A+I G   HG+ E A+  F+EM   G+ PD   F+ 
Sbjct: 648 KCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIG 707

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VLSACSH+GLT    + F  M+  YG++P  EHY+C+VD L RAG + EA +++ SM  E
Sbjct: 708 VLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFE 767

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
               ++  LL AC++  + E  E    K+  ++P ++  YVLLSNIY+ A   +  +  R
Sbjct: 768 ASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSAR 827

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD 434
            MM+   +KK+PG+S++++K +VHLF+ GDR+H +T  IY  ++ +   ++E      ++
Sbjct: 828 NMMKRVNVKKEPGFSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYVMKRIKEEGYVPDTE 887

Query: 435 ----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIV 490
                   E+  +    HSEKLAIA+G++ T P T + V+KNLR+CGDCH  IK +S + 
Sbjct: 888 FALVDIEEEDKESALSYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISNVF 947

Query: 491 DRQFIVRDATRFHHFKSGFCSCKDYW 516
            R+ ++RDA RFHHF+SG CSC DYW
Sbjct: 948 QREIVLRDANRFHHFRSGICSCGDYW 973



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 163/335 (48%), Gaps = 23/335 (6%)

Query: 8   STHLTVC--------YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD 59
           +T L VC        +N  +S Y+      EAV  F  M +  V  +S+T + +L +   
Sbjct: 250 ATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVAS 309

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
             +L LG   H   V+FG D   SV N  + MYVK GSV+Y R++F Q+ E  LI+WN +
Sbjct: 310 LNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTV 369

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL-GAHSVGLEVEQQIQANG 178
           ISG A++GL    L L+ ++   G+ PD  T   VL +C+ L  ++ VG +V       G
Sbjct: 370 ISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAG 429

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
              + F++ ALI++Y++ G +++A  +F       + SW A++ G+ +  +   A++LF 
Sbjct: 430 IVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFS 489

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMV----- 292
            M + G + D   F +   A        +G + +   +K ++       HY   V     
Sbjct: 490 LMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRF-------HYDLFVISGIL 542

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           D+  + G++  A ++  + +  PD   W  ++  C
Sbjct: 543 DMYLKCGEMKSARKVF-NQIPSPDDVAWTTVISGC 576



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 149/326 (45%), Gaps = 5/326 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPIC--VDPGYLWLGMCCH 70
           + +N +ISG   + L   ++ LF  +   G+  +  T+  +L  C  ++  Y  +G   H
Sbjct: 364 ISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYC-VGRQVH 422

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
              +K G+ LD  V   L+ +Y K G ++    LF       L +WNAM+ G+  +    
Sbjct: 423 TCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYR 482

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             L L+  M   G   D +TF     +   L     G ++   +    F  + F+ + ++
Sbjct: 483 EALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGIL 542

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MY +CG +K AR +F+ +P    V+WT +I G   +G  E A+  + +M  +G++PD  
Sbjct: 543 DMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEY 602

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            F +++ ACS     ++G +    +  K      P   T +VD+  + G + +A  L   
Sbjct: 603 TFATLVKACSLLTALEQGKQIHANIM-KLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRR 661

Query: 311 MLVEPDGAVWGALLGACKIHKNVELA 336
           M      A+W A++     H N E A
Sbjct: 662 MNTRS-VALWNAMIVGLAQHGNAEEA 686



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 122/248 (49%), Gaps = 6/248 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  +ISG V N    +A+  + +MR  GV+ +  T   L+  C     L  G   H  
Sbjct: 567 VAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHAN 626

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K     D  V   L+ MY KCG+++    LF ++  + +  WNAMI G AQ+G A   
Sbjct: 627 IMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEA 686

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN--NALI 190
           L  + EMKS GV PD VTF+GVLS+C+H G  S   +    +Q   +G  P +   + L+
Sbjct: 687 LNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKT-YGVEPEIEHYSCLV 745

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           +  +R G++++A  +   MP   +   +  ++    + G  E   ++ +++    + P  
Sbjct: 746 DALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETGERVAEKLFT--MDPSD 803

Query: 250 TAFVSVLS 257
           +A   +LS
Sbjct: 804 SAAYVLLS 811



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 137/298 (45%), Gaps = 14/298 (4%)

Query: 63  LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE--KGLITWNAMI 120
           L LG   H + V  GL+ D  V N L+TMY KCGS+   RKLFD  P+  + L+T+NA++
Sbjct: 29  LILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAIL 88

Query: 121 SGYAQNGL-----ATH-VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
           + YA  G       TH    ++R ++   +     T   +   C   G+ S    ++   
Sbjct: 89  AAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYA 148

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
              G   + F+  AL+N+YA+   +++AR +FD MP + VV W  ++  Y   G G+  +
Sbjct: 149 VKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVL 208

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
            LF    +SG+RPD  +  ++L       + ++ LE       K  +       T     
Sbjct: 209 GLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKT 268

Query: 295 LG---RAGQLNEALELIESML---VEPDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
           L    +AG+  EA++    M+   V  D   +  +L       ++EL +   G V++ 
Sbjct: 269 LSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRF 326



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 145/334 (43%), Gaps = 33/334 (9%)

Query: 17  ALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKF 76
           AL++ Y     + EA  LF +M  + V + +V M   + +      L L    H    + 
Sbjct: 162 ALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFH----RS 217

Query: 77  GLDLD-FSVGNCLMTMYVKC-------GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
           GL  D  SV   LM +  K            Y  KLF    +  +  WN  +S Y Q G 
Sbjct: 218 GLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQAGE 277

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
               ++ +R+M    V  D++T++ +LS  A L    +G ++   +   G+     + N+
Sbjct: 278 GWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANS 337

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
            INMY + G++  AR +F  M    ++SW  +I G    G  E +++LF ++L+SG+ PD
Sbjct: 338 AINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPD 397

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKN-------KYGLQPGPEHYTCMVDLLGRAGQL 301
                SVL ACS        LE  Y +         K G+       T ++D+  + G++
Sbjct: 398 QFTITSVLRACS-------SLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKM 450

Query: 302 NEALELIESMLVEPDG---AVWGALLGACKIHKN 332
            EA    E +    DG   A W A++    +  N
Sbjct: 451 EEA----ELLFHNQDGFDLASWNAMMHGFTVSDN 480


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/549 (38%), Positives = 306/549 (55%), Gaps = 51/549 (9%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGV---------------------------E 44
           T+ +N L+SGYV N ++SEA  +F KM E+ V                           E
Sbjct: 25  TISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRMPE 84

Query: 45  INSVTMLCLLPICVDPGYL-WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRK 103
            N V+   +L   ++ G +         + VK     D      ++      G +   R+
Sbjct: 85  RNVVSWTVMLGGLIEDGRVDEARQLFDMMPVK-----DVVASTNMIDGLCSEGRLIEARE 139

Query: 104 LFDQVPEKGLITWNAMISG-------------YAQNGLATHVLELYREMKSLGVCPDAVT 150
           +FD++P++ ++ W +MISG             Y + G     L L+  M+  GV P   +
Sbjct: 140 IFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPS 199

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
            + VLS C  L +   G +V  Q+  + F  + ++++ LI MY +CG+L  A+ +FD   
Sbjct: 200 VISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFS 259

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270
            K +V W +II GY  HG GE A+++F +M  S I PD   F+ VLSACS+ G   +GLE
Sbjct: 260 SKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLE 319

Query: 271 YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
            F  MK+KY + P  EHY CMVDLLGRAG+LNEA+ LIE+M VE D  VWGALLGAC+ H
Sbjct: 320 IFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTH 379

Query: 331 KNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSY 390
           KN++LAE+A  K+++LEP N G Y+LLSN+YS       ++ +R  MR + L+K PG S+
Sbjct: 380 KNLDLAEIAAKKLLQLEPNNAGPYILLSNLYSSQSRWKDVVELRKTMRAKNLRKSPGCSW 439

Query: 391 VELKGRVHLFMVGDRNHHQTVE-IYRMLDKLENLVQEH----DGTKRSDQKNSEEHLNDT 445
           +E+  +VH+F  G    H   E I + L KL  L++E     DG+      + EE ++  
Sbjct: 440 IEVDKKVHIFSGGGSTSHPEHEMILKKLGKLGALLREAGYCPDGSFVMHDVDEEEKVHSL 499

Query: 446 EVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHF 505
             HSEKLA+A+G++    G  I VMKNLR+CGD H  IKL++++  R+ I+RD  RFHHF
Sbjct: 500 RDHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDSHSTIKLIAQVTGREIILRDTNRFHHF 559

Query: 506 KSGFCSCKD 514
           K G CSC D
Sbjct: 560 KDGLCSCSD 568



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 90/218 (41%), Gaps = 40/218 (18%)

Query: 89  MTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDA 148
           M  Y +       RKLFD++PE   I+WN ++SGY QNG+ +   +++ +M    V    
Sbjct: 1   MAGYFQNKRPREARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWT 60

Query: 149 VTFVG---------------------VLSSCAHLGAHSVGLEVEQQIQANGFGSNP---- 183
               G                     V+S    LG       V++  Q   F   P    
Sbjct: 61  AMIRGYVQEGLIEEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQL--FDMMPVKDV 118

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGG-------------YGIHGHG 230
             +  +I+     G L +AR IFD MP++ VV+WT++I G             Y   G  
Sbjct: 119 VASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFE 178

Query: 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
             A+ LF  M + G+RP   + +SVLS C      D G
Sbjct: 179 LEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHG 216



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 69/146 (47%), Gaps = 9/146 (6%)

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +    ++AR +FD MP    +SW  ++ GY  +G    A ++FD+M +  +     ++
Sbjct: 4   YFQNKRPREARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNV----VSW 59

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            +++      GL ++    F+ M  +  +      +T M+  L   G+++EA +L + M 
Sbjct: 60  TAMIRGYVQEGLIEEAELLFWRMPERNVVS-----WTVMLGGLIEDGRVDEARQLFDMMP 114

Query: 313 VEPDGAVWGALLGACKIHKNVELAEL 338
           V+   A    + G C   + +E  E+
Sbjct: 115 VKDVVASTNMIDGLCSEGRLIEAREI 140


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/552 (37%), Positives = 318/552 (57%), Gaps = 38/552 (6%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE   +++L +C NA+ S YV   L  EA+ +F  M + GV  + ++ML  +  C   
Sbjct: 293 LFDE-YGASNLDLC-NAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQL 350

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKC------------------------- 95
             +  G  CH   ++ G +   ++ N L+ MY+KC                         
Sbjct: 351 RNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIV 410

Query: 96  ------GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL-GVCPDA 148
                 G VD   + F+ +PEK +++WN +ISG  Q  L    +E++  M+S  GV  D 
Sbjct: 411 AGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADG 470

Query: 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208
           VT + + S+C HLGA  +   +   I+ NG   +  L   L++M++RCG+ + A +IF+ 
Sbjct: 471 VTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNS 530

Query: 209 MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
           +  + V +WTA IG   + G+ E A++LFD+M++ G++PDG AFV  L+ACSH GL  +G
Sbjct: 531 LTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQG 590

Query: 269 LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACK 328
            E FY M   +G+ P   HY CMVDLLGRAG L EA++LIE M +EP+  +W +LL AC+
Sbjct: 591 KEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACR 650

Query: 329 IHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGY 388
           +  NVE+A  A  K+  L P  TG YVLLSN+Y+ A   + + +VR+ M+E+ L+K PG 
Sbjct: 651 VQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGT 710

Query: 389 SYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLEN----LVQEHDGTKRSDQKNSEEHLND 444
           S ++++G+ H F  GD +H +   I  MLD++      L    D +      + +E +  
Sbjct: 711 SSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFM 770

Query: 445 TEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHH 504
              HSEKLA+A+G+I+++ GT I ++KNLR+C DCH F K  SK+ +R+ I+RD  RFH+
Sbjct: 771 LSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHY 830

Query: 505 FKSGFCSCKDYW 516
            + G CSC D+W
Sbjct: 831 IRQGKCSCGDFW 842



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 116/383 (30%), Positives = 176/383 (45%), Gaps = 39/383 (10%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVD 59
           VFDE   S    V + ++I GY       +AV LF +M R++ V  NSVTM+C++  C  
Sbjct: 191 VFDE--MSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAK 248

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              L  G   +      G++++  + + L+ MY+KC ++D  ++LFD+     L   NAM
Sbjct: 249 LEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAM 308

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
            S Y + GL    L ++  M   GV PD ++ +  +SSC+ L     G      +  NGF
Sbjct: 309 ASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGF 368

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            S   + NALI+MY +C     A  IFD M  KTVV+W +I+ GY  +G  + A + F+ 
Sbjct: 369 ESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFET 428

Query: 240 M--------------------------------LKSGIRPDGTAFVSVLSACSHAGLTDK 267
           M                                 + G+  DG   +S+ SAC H G  D 
Sbjct: 429 MPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDL 488

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
             ++ Y    K G+Q      T +VD+  R G    A+ +  S L   D + W A +GA 
Sbjct: 489 A-KWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNS-LTNRDVSAWTAAIGAM 546

Query: 328 KIHKNVELAELAFGKVIK--LEP 348
            +  N E A   F  +I+  L+P
Sbjct: 547 AMAGNAERAIELFDDMIEQGLKP 569



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 133/248 (53%), Gaps = 1/248 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           YN+LI GY  + L +EA+ LF +M   G+  +  T    L  C        G+  H + V
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K G   D  V N L+  Y +CG +D  RK+FD++ E+ +++W +MI GYA+   A   ++
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221

Query: 135 L-YREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
           L +R ++   V P++VT V V+S+CA L     G +V   I+ +G   N  + +AL++MY
Sbjct: 222 LFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMY 281

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
            +C  +  A+ +FD      +    A+   Y   G    A+ +F+ M+ SG+RPD  + +
Sbjct: 282 MKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISML 341

Query: 254 SVLSACSH 261
           S +S+CS 
Sbjct: 342 SAISSCSQ 349



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 121/245 (49%), Gaps = 6/245 (2%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCG---SVDYGRKLFDQVPEKGL-ITWNAMISGYAQ 125
           H    K GLD D S    L+    + G   S+ + +++F+     G    +N++I GYA 
Sbjct: 52  HRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYAS 111

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
           +GL    + L+  M + G+ PD  TF   LS+CA   A   G+++   I   G+  + F+
Sbjct: 112 SGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFV 171

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS-G 244
            N+L++ YA CG L  AR +FD M  + VVSWT++I GY      + AV LF  M++   
Sbjct: 172 QNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEE 231

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
           + P+    V V+SAC+     + G E  Y      G++      + +VD+  +   ++ A
Sbjct: 232 VTPNSVTMVCVISACAKLEDLETG-EKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVA 290

Query: 305 LELIE 309
             L +
Sbjct: 291 KRLFD 295


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/518 (38%), Positives = 311/518 (60%), Gaps = 26/518 (5%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVT---MLCLLPICVDPGYLWLGMCC 69
           V + A+ISG++ N    EAV LF +M+ +GV  N  T   +L  LP+ + P  +      
Sbjct: 363 VSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPV-ISPSEV------ 415

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   VK   +   +VG  L+  YVK G V+   K+F  + +K ++ W+AM++GYAQ G  
Sbjct: 416 HAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGET 475

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG------SNP 183
              ++++ E+   G+ P+  TF  +L+ CA   A S+G    Q  Q +GF       S+ 
Sbjct: 476 EAAIKMFGELTKGGIKPNEFTFSSILNVCAATNA-SMG----QGKQFHGFAIKSRLDSSL 530

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
            +++AL+ MYA+ GN++ A  +F     K +VSW ++I GY  HG    A+ +F EM K 
Sbjct: 531 CVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKR 590

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
            ++ DG  F+ V +AC+HAGL ++G +YF  M     + P  EH +CMVDL  RAGQL +
Sbjct: 591 KVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEK 650

Query: 304 ALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE 363
           A+++IE+M       +W  +L AC++HK  EL  LA  K+I ++P ++  YVLLSN+Y+E
Sbjct: 651 AMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAE 710

Query: 364 ARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD----K 419
           + +     +VR +M ER +KK+PGYS++E+K + + F+ GDR+H    +IY  L+    +
Sbjct: 711 SGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTR 770

Query: 420 LENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDC 479
           L++L  E D +      + E        HSE+LAIAFG+I T  G+ ++++KNLR+CGDC
Sbjct: 771 LKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDC 830

Query: 480 HLFIKLVSKIVDRQFIVRDATRFHHFKS-GFCSCKDYW 516
           HL IKL++KI +R+ +VRD+ RFHHF S G CSC D+W
Sbjct: 831 HLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 173/349 (49%), Gaps = 5/349 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           Y +L+ G+  +    EA  LF  +   G+E++      +L +         G   HC C+
Sbjct: 61  YISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCI 120

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           KFG   D SVG  L+  Y+K  +   GRK+FD++ E+ ++TW  +ISGYA+N +   VL 
Sbjct: 121 KFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLT 180

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+  M++ G  P++ TF   L   A  G    GL+V   +  NG      ++N+LIN+Y 
Sbjct: 181 LFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYL 240

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CGN++KAR +FD    K+VV+W ++I GY  +G    A+ +F  M  + +R   ++F S
Sbjct: 241 KCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFAS 300

Query: 255 VLSACSHAGLTD-KGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           V+  C  A L + +  E  +    KYG        T ++    +   + +AL L + +  
Sbjct: 301 VIKLC--ANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGC 358

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNI 360
             +   W A++     +   E A   F ++ +  + P    Y V+L+ +
Sbjct: 359 VGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTAL 407



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 107/346 (30%), Positives = 172/346 (49%), Gaps = 9/346 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE +K  ++ V +  LISGY  NS+  E ++LF +M+ +G + NS T    L +  + 
Sbjct: 150 VFDE-MKERNV-VTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEE 207

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G    G+  H + VK GLD    V N L+ +Y+KCG+V   R LFD+   K ++TWN+MI
Sbjct: 208 GVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMI 267

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGYA NGL    L ++  M+   V     +F  V+  CA+L       ++   +   GF 
Sbjct: 268 SGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFL 327

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            +  +  AL+  Y++C  +  A  +F  +     VVSWTA+I G+  +   E AV LF E
Sbjct: 328 FDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSE 387

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M + G+RP+   +  +L+A      ++      +    K   +      T ++D   + G
Sbjct: 388 MKRKGVRPNEFTYSVILTALPVISPSE-----VHAQVVKTNYERSSTVGTALLDAYVKLG 442

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345
           ++ EA ++  S + + D   W A+L         E A   FG++ K
Sbjct: 443 KVEEAAKVF-SGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTK 487



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 113/258 (43%), Gaps = 17/258 (6%)

Query: 104 LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163
           LFD+ P +   ++ +++ G++++G       L+  +  LG+  D   F  VL   A L  
Sbjct: 49  LFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATLCD 108

Query: 164 HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGG 223
              G ++  Q    GF  +  +  +L++ Y +  N K  R +FD M  + VV+WT +I G
Sbjct: 109 ELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISG 168

Query: 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP 283
           Y  +   +  + LF  M   G +P+   F + L   +  G+  +GL+  + +  K GL  
Sbjct: 169 YARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQ-VHTVVVKNGLDK 227

Query: 284 GPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH------------- 330
                  +++L  + G + +A  L +   V+     W +++     +             
Sbjct: 228 TIPVSNSLINLYLKCGNVRKARILFDKTEVK-SVVTWNSMISGYAANGLDLEALGMFYSM 286

Query: 331 --KNVELAELAFGKVIKL 346
               V L+E +F  VIKL
Sbjct: 287 RLNYVRLSESSFASVIKL 304


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/509 (39%), Positives = 304/509 (59%), Gaps = 5/509 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA++SGY  +    EA+ LF  MR +G+ ++  T++ L+P  +  G L +G   H  
Sbjct: 189 VSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGF 248

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ G + D  +   LM +YV    VD   ++F ++  K +  W  M++G++        
Sbjct: 249 IIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRA 308

Query: 133 LELYREMKSL-GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
           ++ + +M  +  +  D++  +G+LSSC+H GA   G  V        F +N F+ +A+I+
Sbjct: 309 IKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVID 368

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA CGNL+ A+  F GM  K VV W A+I G G++G+G  A+ LF +M  SG+ PD + 
Sbjct: 369 MYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDEST 428

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           FVSVL ACSHAG+  +GL+ FY M       P  +HY C++D+LGRAGQL+ A   I +M
Sbjct: 429 FVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVIDILGRAGQLDAAYSFINNM 488

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
             +PD  V+  LLGAC+IH N++L      K+ ++EP + GYYVLLSN+Y+ A N +G+ 
Sbjct: 489 PFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVK 548

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
             R  +R +RLKKDPG+S +E+   ++ FM G+++H Q  +I  +L  L   +++     
Sbjct: 549 MTRASLRSKRLKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVP 608

Query: 432 RSD---QKNSEEHLNDTEV-HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
            ++   Q  S++   D    HSEK+AIAFG++ T PGT I + KNLR C DCH   K VS
Sbjct: 609 NTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPGTIIRITKNLRTCNDCHSASKFVS 668

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K+  R  +++DA RFH F+ G CSC+DYW
Sbjct: 669 KVFGRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 154/314 (49%), Gaps = 3/314 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  LISG   N    EA+ +F +M     + N+VT+  +LP   + G + +    HC 
Sbjct: 88  VSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCF 147

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            V+ G + +  V   L+ MY K G +   R+LF+ + E+ +++WNA++SGY+ +G +   
Sbjct: 148 WVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEA 207

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           ++L+  M+  G+  D  T + ++ +   +G   VG  +   I   G+ ++  +  AL+++
Sbjct: 208 IDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDI 267

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK-SGIRPDGTA 251
           Y     +  A  +F  M  K V +WT ++ G+    H + A++ F++ML    ++ D   
Sbjct: 268 YVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIV 327

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            + +LS+CSH+G   +G    + +  K          + ++D+    G L +A      M
Sbjct: 328 LMGILSSCSHSGALQQG-RRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGM 386

Query: 312 LVEPDGAVWGALLG 325
             E D   W A++ 
Sbjct: 387 -GEKDVVCWNAMIA 399



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 140/288 (48%), Gaps = 2/288 (0%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   +  GL  +  + N LM  YV CG +   +++F   P K +++W  +ISG A+N   
Sbjct: 44  HAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTILISGLAKNDCF 103

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              ++++REM      P+AVT   VL + A+LG   +   V       GF  N F+  AL
Sbjct: 104 VEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETAL 163

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++MY++ G +  AR +F+ M  + VVSW AI+ GY  HG  E A+ LF+ M + G+  D 
Sbjct: 164 VDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDF 223

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
              +S++ A    G    G    +G   + G +      T ++D+      +++A  +  
Sbjct: 224 YTIMSLIPASLSVGCLQVGTG-IHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFS 282

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
            M V+ D A W  +L      ++ + A   F K++ ++ +     VL+
Sbjct: 283 EMFVK-DVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLM 329



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 105/233 (45%), Gaps = 13/233 (5%)

Query: 133 LELYREMKS---LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              YR + S     +CP A +   +L     L       ++  QI  +G   N FL+N+L
Sbjct: 6   FNFYRHLSSNPTQRLCPLAQSHASILRKLKDLKPLQ---QIHAQIITSGLTHNTFLSNSL 62

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           +N Y  CG L  A+ IF   P K VVSWT +I G   +     A+ +F EM     +P+ 
Sbjct: 63  MNAYVYCGLLADAKQIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNA 122

Query: 250 TAFVSVLSACSHAGLTD--KGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
               SVL A ++ GL    K +  F+    + G +      T +VD+  + G +  A +L
Sbjct: 123 VTISSVLPAFANLGLIRIAKSVHCFWV---RGGFEGNVFVETALVDMYSKFGCMGVARQL 179

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
            ESM  E +   W A++     H   E A   F  +++ + +   +Y ++S I
Sbjct: 180 FESM-SERNVVSWNAIVSGYSDHGFSEEAIDLF-NLMRRKGLLVDFYTIMSLI 230


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/523 (38%), Positives = 306/523 (58%), Gaps = 12/523 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE + S  L V +N +I     N   +EA+ L  +M+ +G   +  T+  +L  C   
Sbjct: 121 VFDE-MPSRSL-VSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAK 178

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L      H   +K  +DL+  V   L+ +Y KCG +     +F+ +P++ ++TW++M 
Sbjct: 179 CALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMA 238

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GY QN +    L L+R+    G+  D      V+ +CA L A   G +V   +  +GF 
Sbjct: 239 AGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFC 298

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           SN F+ ++LI+MYA+CG ++++  +F  + ++ VV W A+I G   H      + LF++M
Sbjct: 299 SNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKM 358

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            + G+ P+   FVSVLSAC H GL  KG +YF  M  ++ L P   HY+CMVD L RAGQ
Sbjct: 359 QQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQ 418

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           + EA +LI  +      ++WG+LL +C+ H N+ELAE+A  K+  +EP N+G Y+LLSN+
Sbjct: 419 IFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNM 478

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY----RM 416
           Y+     D + ++R +++E  +KK+ G S++E+K +VHLFMVG+RNH + VEIY     +
Sbjct: 479 YAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEV 538

Query: 417 LDKLENL---VQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
           +D+L+ L   V+      +  +   +E L     HSEKLA   G++   P   I +MKNL
Sbjct: 539 MDELQKLGYKVETQHDLHQVGESIKQELLRH---HSEKLAFTMGLLFLPPNAPIRIMKNL 595

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           RICGDCH F+KL SK   R  IVRD  RFHHFK+G CSC D+W
Sbjct: 596 RICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 149/309 (48%), Gaps = 6/309 (1%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           +L +C     L  G  CH   +  GL  D    N L+ MY KCGSVD+ R++FD++P + 
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
           L++WN MI    QNG     L+L  +M+  G      T   VL +CA   A S    +  
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHA 189

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
                    N F+  AL+++YA+CG +K A  +F+ MP ++VV+W+++  GY  +   E 
Sbjct: 190 FAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQ 249

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
           A+ LF +  ++G++ D     SV+ AC+      +G +    + +K G        + ++
Sbjct: 250 ALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEG-KQVNALLSKSGFCSNIFVASSLI 308

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAV-WGALLGACKIHKNVELAELAFGKV--IKLEPM 349
           D+  + G + E+ ++     VE    V W A++     H       + F K+  + L P 
Sbjct: 309 DMYAKCGGIEESYKVFRD--VEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPN 366

Query: 350 NTGYYVLLS 358
           +  +  +LS
Sbjct: 367 DVTFVSVLS 375


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/443 (43%), Positives = 277/443 (62%), Gaps = 10/443 (2%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140
           D    N ++    K G +D     F ++P K + +W +MISG+ Q G     ++L+ +++
Sbjct: 75  DAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLE 134

Query: 141 SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
              V P+ VT V VL++CA LG   +G  V +    +GF  N  + N LI+MY +CG L+
Sbjct: 135 DEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLE 194

Query: 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
            AR +F  M  +TVVSW+A+I G  +HG  E A+ LF EM+K G++P+G  F+ +L ACS
Sbjct: 195 NARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACS 254

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320
           H GL D+G  +F  M   YG+ P  EHY C+VDL  RAG L EA E I SM ++P+G VW
Sbjct: 255 HMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVW 314

Query: 321 GALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380
           GALLG CK+HKN++LAE A   + +L+P+N GYYV++SNIY+EA   +   RVR +M++R
Sbjct: 315 GALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAERWEDAARVRKLMKDR 374

Query: 381 RLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS------- 433
            +KK  G+S + + G VH F+ GD+ H Q  +I ++ DKL   ++      ++       
Sbjct: 375 GVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDKLLVKMKRRGYAPKTSVVLLDM 434

Query: 434 DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQ 493
           ++K  E+ L     HSEKLA+ FG++ T  GT I +MKNLR+C DCH  +K++S IV R+
Sbjct: 435 EEKEKEKFLYR---HSEKLAVVFGLMTTPEGTPIRIMKNLRVCEDCHAALKIISGIVSRE 491

Query: 494 FIVRDATRFHHFKSGFCSCKDYW 516
            IVRD  RFH F+ G CSC+D+W
Sbjct: 492 IIVRDRNRFHCFRDGQCSCRDFW 514



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/246 (32%), Positives = 139/246 (56%), Gaps = 6/246 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           + ++ISG+V     +EA+ LF K+ ++ V  N VT++ +L  C D G L LG   H    
Sbjct: 110 WTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYST 169

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K G   +  V N L+ MYVKCG ++  R++F ++ E+ +++W+AMI+G A +G A   L 
Sbjct: 170 KSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALC 229

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALINM 192
           L+ EM  LGV P+ VTF+G+L +C+H+G    G      + A+ +G  P + +   ++++
Sbjct: 230 LFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTAD-YGVIPQIEHYGCVVDL 288

Query: 193 YARCGNLKKARAIFDGMPRKTV-VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           ++R G L++A      MP K   V W A++GG  +H + ++A +    +  S + P    
Sbjct: 289 FSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHL--SELDPLNDG 346

Query: 252 FVSVLS 257
           +  V+S
Sbjct: 347 YYVVIS 352



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 98/239 (41%), Gaps = 33/239 (13%)

Query: 139 MKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGN 198
           M+   V PD  T   VL +C  L     G  +    Q  GFGSN FL N ++N+Y  CG 
Sbjct: 1   MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGE 60

Query: 199 LKKARAIFDGMPR-------------------------------KTVVSWTAIIGGYGIH 227
           +  A  +F+ MP+                               K V SWT++I G+   
Sbjct: 61  MGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQC 120

Query: 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH 287
           G    A+ LF ++    +RP+    VSVL+AC+  G  D G    +    K G +     
Sbjct: 121 GKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLG-RIVHEYSTKSGFKRNVHV 179

Query: 288 YTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
              ++D+  + G L  A  +   M  E     W A++    +H   E A   F ++IKL
Sbjct: 180 CNTLIDMYVKCGCLENARRVFYEM-EERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKL 237



 Score = 38.9 bits (89), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 10/117 (8%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPIC-----VDPGYLWLG 66
            V ++A+I+G  ++    EA+ LF +M + GV+ N VT + LL  C     +D G  +  
Sbjct: 208 VVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFA 267

Query: 67  MCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK-GLITWNAMISG 122
                +   +G+        C++ ++ + G ++   +    +P K   + W A++ G
Sbjct: 268 ----SMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGG 320


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/509 (37%), Positives = 299/509 (58%), Gaps = 4/509 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           ++ +  +I+G + N L +EA+ LF  MR++G+ ++  T   +L  C     L  G   H 
Sbjct: 235 SISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHT 294

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + ++ G + +  VG+ L+ MY KC SV Y   +F ++  K +++W AM+ GY QNG +  
Sbjct: 295 LIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEE 354

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            + ++ +M+  G+ PD  T   V+SSCA+L +   G +   Q   +G  S   ++NALI 
Sbjct: 355 AVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALIT 414

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +Y +CG+++ +  +FD M  +  VSWTA++ GY   G     + LF+ ML  G++PD   
Sbjct: 415 LYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVT 474

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F++VLSACS AGL ++G +YF  M   +G+ P  +HYTCM+DL GRAG+L EA   I  M
Sbjct: 475 FIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKM 534

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
              PD   W  LL +C+++ N E+ + A   +++L+P N   Y+LLS+IY+       + 
Sbjct: 535 PFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVA 594

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH---- 427
           ++R  MRE+  +K+PG+S+++ K +V++F   D++   + +IY  L+KL + + E     
Sbjct: 595 QLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGYVP 654

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           D +         E +     HSEKLAIAFG++    G  I V+KNLR+CGDCH   K +S
Sbjct: 655 DASSVLHDVEDSEKMKMLNHHSEKLAIAFGLLFIPHGLPIRVVKNLRVCGDCHNATKYIS 714

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KI  R+ +VRDA RFH FK G CSC D+W
Sbjct: 715 KISQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 109/253 (43%), Gaps = 63/253 (24%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           HC+ +K   + +  + N L+  Y K G++ Y R +FD++P+    +WN M+S Y+++G  
Sbjct: 28  HCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYSKSGDL 87

Query: 130 THVLEL-------------------------------YREMKSLGVCP-DAVTFVGVLSS 157
           + + E+                               Y  M   GV   + +TF  +L  
Sbjct: 88  STMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLL 147

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA----------------------- 194
            +  G   +G ++  QI   GFG+  F+ ++L++MYA                       
Sbjct: 148 VSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMY 207

Query: 195 --------RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
                   R G +K ++ +F GM  +  +SWT +I G   +G    A+ LF +M + G+ 
Sbjct: 208 NTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMA 267

Query: 247 PDGTAFVSVLSAC 259
            D   F SVL+AC
Sbjct: 268 MDQYTFGSVLTAC 280


>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/510 (40%), Positives = 312/510 (61%), Gaps = 10/510 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQG--VEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           +NA+I G  L+S  + AV  +  M        I+++T    L  C         +  H  
Sbjct: 69  WNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALARSEAIQLHSQ 128

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++FG + D  +   L+  Y K G +D  +KLFD++P+  + +WNA+I+G+AQ       
Sbjct: 129 LLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPADA 188

Query: 133 LELYREMKSLG-VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
           +  ++ MK  G + P+AVT  G L +C+ LGA   G  V + I      SN  + N +I+
Sbjct: 189 IMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLDSNVQVCNVVID 248

Query: 192 MYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           MYA+CG++ KA  +F+ M   K++++W  +I  + +HG G  A+ LF+++ +SG+ PD  
Sbjct: 249 MYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAV 308

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
           ++++VL AC+HAGL + GL+ F  M  + GL+P  +HY  MVDLLGRAG+L EA +++ S
Sbjct: 309 SYLAVLCACNHAGLVEDGLKLFNSMTQR-GLEPNIKHYGSMVDLLGRAGRLKEAYDIVSS 367

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
            L  P+  +W  LLGAC+ + +VE+AELA  K++++  ++ G +VLLSN+Y+  +  D +
Sbjct: 368 -LPFPNMVLWQTLLGACRTYGDVEMAELASRKLVEMGFISCGXFVLLSNVYAARQRWDDV 426

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH--- 427
            RVR  MR R +KK PG+SY+E+KG+++ F+ GD++H    EIY  LD++   ++ +   
Sbjct: 427 GRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGDQSHSSCREIYAKLDEINLRIKAYGYS 486

Query: 428 -DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
            D +        E+  N    HSEKLA+AFG+  T  GT I V+KNLRICGDCH+ IKL+
Sbjct: 487 ADTSNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPIQVIKNLRICGDCHVVIKLI 546

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SKI  R+ IVRD TRFH FK G CSCKDYW
Sbjct: 547 SKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 137/309 (44%), Gaps = 9/309 (2%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCP--DAVTFVG 153
           G + Y   +F  +P      WNA+I G A +    + +  YR M +       DA+T   
Sbjct: 49  GDLSYALHIFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSF 108

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
            L +CA   A S  +++  Q+   GF ++  L   L++ YA+ G+L  A+ +FD MP+  
Sbjct: 109 ALKACARALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPD 168

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG-IRPDGTAFVSVLSACSHAGLTDKGLEYF 272
           + SW A+I G+        A+  F  M   G +RP+       L ACS  G   +G E  
Sbjct: 169 IASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEG-ESV 227

Query: 273 YGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKN 332
           +    +  L    +    ++D+  + G +++A  + E+M  +     W  ++ A  +H +
Sbjct: 228 HKYIVEEKLDSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGD 287

Query: 333 VELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGY-- 388
              A   F K+ +  + P    Y  +L          DG +++   M +R L+ +  +  
Sbjct: 288 GHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDG-LKLFNSMTQRGLEPNIKHYG 346

Query: 389 SYVELKGRV 397
           S V+L GR 
Sbjct: 347 SMVDLLGRA 355


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/509 (37%), Positives = 301/509 (59%), Gaps = 5/509 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+I GY       EA+  F KM ++ V I+   +   L  C        G   H  
Sbjct: 173 VSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSS 232

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE-KGLITWNAMISGYAQNGLATH 131
            VK G + D  VGN L  MY K G ++    +F    E + ++++  +I GY +      
Sbjct: 233 VVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEK 292

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L ++ E++  G+ P+  TF  ++ +CA+  A   G ++  Q+    F  +PF+++ L++
Sbjct: 293 GLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVD 352

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY +CG L++A   FD +   T ++W +++  +G HG G+ A+++F+ M+  G++P+   
Sbjct: 353 MYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAIT 412

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+S+L+ CSHAGL ++GL+YFY M   YG+ PG EHY+C++DLLGRAG+L EA E I  M
Sbjct: 413 FISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRM 472

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
             EP+   W + LGAC+IH + E+ +LA  K++KLEP N+G  VLLSNIY+  R  + + 
Sbjct: 473 PFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVR 532

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
            VRM MR+  +KK PGYS+V++  + H+F   D +H +   IY  LD L + ++      
Sbjct: 533 SVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVP 592

Query: 432 RSDQK--NSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           R+D    + ++ + +  +  HSE++A+AF +I+   G  I+V KNLR+C DCH  IK +S
Sbjct: 593 RTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFIS 652

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K+  R+ IVRD +RFHHF  G CSC DYW
Sbjct: 653 KVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 157/314 (50%), Gaps = 5/314 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+ISG   NS  SEA+  F  MR  G           +  C   G + +G   HC+
Sbjct: 72  VSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCL 131

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +KFG+  +  VG+ L  MY KCG++    K+F+++P K  ++W AMI GY++ G     
Sbjct: 132 ALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEA 191

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L  +++M    V  D       L +C  L A   G  V   +   GF S+ F+ NAL +M
Sbjct: 192 LLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDM 251

Query: 193 YARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           Y++ G+++ A  +F G+    + VVS+T +I GY      E  + +F E+ + GI P+  
Sbjct: 252 YSKAGDMESASNVF-GIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEF 310

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            F S++ AC++    ++G +  +    K      P   + +VD+ G+ G L +A++  + 
Sbjct: 311 TFSSLIKACANQAALEQGTQ-LHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDE 369

Query: 311 MLVEPDGAVWGALL 324
            + +P    W +L+
Sbjct: 370 -IGDPTEIAWNSLV 382



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 136/295 (46%), Gaps = 34/295 (11%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+ MY KCG +D+  KLFD +P++ L++W AMISG +QN   +  +  +  M+  G  
Sbjct: 44  NHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEV 103

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P    F   + +CA LG+  +G ++       G GS  F+ + L +MY++CG +  A  +
Sbjct: 104 PTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKV 163

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS----- 260
           F+ MP K  VSWTA+I GY   G  E A+  F +M+   +  D     S L AC      
Sbjct: 164 FEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKAC 223

Query: 261 ------HAGLTDKGLE--YFYG---------------MKNKYGLQPGPEH---YTCMVDL 294
                 H+ +   G E   F G                 N +G+     +   YTC++D 
Sbjct: 224 KFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDG 283

Query: 295 LGRAGQLNEALELIESML---VEPDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
                Q+ + L +   +    +EP+   + +L+ AC     +E       +V+K+
Sbjct: 284 YVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKI 338


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/509 (37%), Positives = 301/509 (59%), Gaps = 5/509 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+I GY       EA+  F KM ++ V I+   +   L  C        G   H  
Sbjct: 108 VSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSS 167

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE-KGLITWNAMISGYAQNGLATH 131
            VK G + D  VGN L  MY K G ++    +F    E + ++++  +I GY +      
Sbjct: 168 VVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEK 227

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L ++ E++  G+ P+  TF  ++ +CA+  A   G ++  Q+    F  +PF+++ L++
Sbjct: 228 GLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVD 287

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY +CG L++A   FD +   T ++W +++  +G HG G+ A+++F+ M+  G++P+   
Sbjct: 288 MYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAIT 347

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+S+L+ CSHAGL ++GL+YFY M   YG+ PG EHY+C++DLLGRAG+L EA E I  M
Sbjct: 348 FISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRM 407

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
             EP+   W + LGAC+IH + E+ +LA  K++KLEP N+G  VLLSNIY+  R  + + 
Sbjct: 408 PFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVR 467

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
            VRM MR+  +KK PGYS+V++  + H+F   D +H +   IY  LD L + ++      
Sbjct: 468 SVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVP 527

Query: 432 RSDQK--NSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           R+D    + ++ + +  +  HSE++A+AF +I+   G  I+V KNLR+C DCH  IK +S
Sbjct: 528 RTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFIS 587

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K+  R+ IVRD +RFHHF  G CSC DYW
Sbjct: 588 KVTGRKIIVRDNSRFHHFTDGSCSCGDYW 616



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 158/320 (49%), Gaps = 5/320 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+ISG   NS  SEA+  F  MR  G           +  C   G + +G   HC+
Sbjct: 7   VSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCL 66

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +KFG+  +  VG+ L  MY KCG++    K+F+++P K  ++W AMI GY++ G     
Sbjct: 67  ALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEA 126

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L  +++M    V  D       L +C  L A   G  V   +   GF S+ F+ NAL +M
Sbjct: 127 LLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDM 186

Query: 193 YARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           Y++ G+++ A  +F G+    + VVS+T +I GY      E  + +F E+ + GI P+  
Sbjct: 187 YSKAGDMESASNVF-GIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEF 245

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            F S++ AC++    ++G +  +    K      P   + +VD+ G+ G L +A++  + 
Sbjct: 246 TFSSLIKACANQAALEQGTQ-LHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDE 304

Query: 311 MLVEPDGAVWGALLGACKIH 330
            + +P    W +L+     H
Sbjct: 305 -IGDPTEIAWNSLVSVFGQH 323



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 121/273 (44%), Gaps = 34/273 (12%)

Query: 108 VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVG 167
           +P++ L++W AMISG +QN   +  +  +  M+  G  P    F   + +CA LG+  +G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 168 LEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH 227
            ++       G GS  F+ + L +MY++CG +  A  +F+ MP K  VSWTA+I GY   
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS-----------HAGLTDKGLE--YFYG 274
           G  E A+  F +M+   +  D     S L AC            H+ +   G E   F G
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 180

Query: 275 ---------------MKNKYGLQPGPEH---YTCMVDLLGRAGQLNEALELIESML---V 313
                            N +G+     +   YTC++D      Q+ + L +   +    +
Sbjct: 181 NALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGI 240

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
           EP+   + +L+ AC     +E       +V+K+
Sbjct: 241 EPNEFTFSSLIKACANQAALEQGTQLHAQVMKI 273


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/509 (38%), Positives = 304/509 (59%), Gaps = 5/509 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA++SGY  +    EA+ LF  MR +G+ ++  T++ L+P  +  G L +G   H  
Sbjct: 189 VTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGF 248

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ G + D  +   LM +YV    VD   ++F ++  K +  W  M++G++        
Sbjct: 249 IIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRA 308

Query: 133 LELYREMKSL-GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
           ++ + +M  +  +  D++  +G+LSSC+H GA   G  V        F +N F+ +A+I+
Sbjct: 309 IKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVID 368

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA CGNL+ A+  F GM  K VV W A+I G G++G+G  A+ LF +M  SG+ PD + 
Sbjct: 369 MYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDEST 428

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           FVSVL ACSHAG+  +GL+ FY M     + P  +HY C++D+LGRAGQL+ A   I +M
Sbjct: 429 FVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNM 488

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
             +PD  V+  LLGAC+IH N++L      K+ ++EP + GYYVLLSN+Y+ A N +G+ 
Sbjct: 489 PFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVK 548

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
             R  +R +R+KKDPG+S +E+   ++ FM G+++H Q  +I  +L  L   +++     
Sbjct: 549 MTRASLRSKRMKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVP 608

Query: 432 RSD---QKNSEEHLNDTEV-HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
            ++   Q  S++   D    HSEK+AIAFG++ T P T I + KNLR C DCH   K VS
Sbjct: 609 NTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPETIIRITKNLRTCDDCHTASKFVS 668

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K+  R  +++DA RFH F+ G CSC+DYW
Sbjct: 669 KVFGRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 155/314 (49%), Gaps = 3/314 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  LISG   N    EA+ +F +M     + N+VT+  +LP   + G + +    HC 
Sbjct: 88  VSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCF 147

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            V+ G + +  V   L+ MY K G +   R+LF+ + E+ ++TWNA++SGY+ +G +   
Sbjct: 148 WVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEA 207

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           ++L+  M+  G+  D  T + ++ +   +G   VG  +   I   G+ ++  +  AL+++
Sbjct: 208 IDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDI 267

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK-SGIRPDGTA 251
           Y     +  A  +F  M  K V +WT ++ G+    H + A++ F++ML    ++ D  A
Sbjct: 268 YVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIA 327

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            + +LS+CSH+G   +G    + +  K          + ++D+    G L +A      M
Sbjct: 328 LMGILSSCSHSGALQQG-RRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGM 386

Query: 312 LVEPDGAVWGALLG 325
             E D   W A++ 
Sbjct: 387 -GEKDVVCWNAMIA 399



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 137/280 (48%), Gaps = 2/280 (0%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   +  GL  +  + N LM  YV CG +   +++F   P K +++W  +ISG A+N   
Sbjct: 44  HAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKNDCF 103

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              ++++REM      P+AVT   VL + A+LG   +   V       GF  N F+  AL
Sbjct: 104 VEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETAL 163

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++MY++ G +  AR +F+ M  + VV+W AI+ GY  HG  E A+ LF+ M + G+  D 
Sbjct: 164 VDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDF 223

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
              +S++ A    G    G    +G   + G +      T ++D+      +++A  +  
Sbjct: 224 YTIMSLIPASLSVGCLQVGTG-IHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFS 282

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPM 349
            M V+ D A W  +L      ++ + A   F K++ ++ +
Sbjct: 283 EMSVK-DVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNL 321



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 7/194 (3%)

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
           ++  QI  +G   N FL+N+L+N Y  CG L  A+ IF   P K VVSWT +I G   + 
Sbjct: 42  QIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKND 101

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD--KGLEYFYGMKNKYGLQPGPE 286
               A+ +F EM+    +P+     SVL A ++ GL    K +  F+    + G +    
Sbjct: 102 CFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWV---RGGFEGNVF 158

Query: 287 HYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
             T +VD+  + G +  A +L ESM  E +   W A++     H   E A   F  +++ 
Sbjct: 159 VETALVDMYSKFGCMGVARQLFESM-SERNVVTWNAIVSGYSDHGFSEEAIDLF-NLMRR 216

Query: 347 EPMNTGYYVLLSNI 360
           + +   +Y ++S I
Sbjct: 217 KGLLVDFYTIMSLI 230


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/458 (41%), Positives = 289/458 (63%), Gaps = 7/458 (1%)

Query: 66   GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG--LITWNAMISGY 123
            G C H    K G      V N L+ +Y  CG  +   K+FD++P +G  L++WN+M++ +
Sbjct: 823  GECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSF 882

Query: 124  AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP 183
            A NG    VL ++ EM  +   PD  T V VL++CA  GA ++G  V   ++  G   N 
Sbjct: 883  AANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENS 942

Query: 184  FLNNALINMYARCGNLKKARAIFDGMPR-KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
             ++NALI++YA+CG++  AR IF+ M   +TVVSWT++I G   +G G+ A++LF  M +
Sbjct: 943  HVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMER 1002

Query: 243  SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
              + P     V VL ACSH GL D G  YF  MK  YG+ P  EH  CMVDLLGRAG++ 
Sbjct: 1003 EKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVE 1062

Query: 303  EALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362
            EA + I +M +EP+  VW  LLG+C +HK +EL ++A+ ++++L+P ++G YVLLSN+Y+
Sbjct: 1063 EAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNLYA 1122

Query: 363  EARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLEN 422
                   +  +R  M + R++K+PG+S VEL+  V+ F++GDR+H ++ +IY ML ++  
Sbjct: 1123 AVGMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAE 1182

Query: 423  LVQEHDGTKRSDQ--KNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGD 478
             ++      R+     + EE   +T +  HSE+LAIAF ++ + PG  I ++KNLR+CGD
Sbjct: 1183 RLRREGYIPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGD 1242

Query: 479  CHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            CH+   L+SK+ DR+ IVRD +RFHHF+ G CSCKDYW
Sbjct: 1243 CHVAFNLISKVYDREIIVRDRSRFHHFQGGACSCKDYW 1280



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 125/247 (50%), Gaps = 8/247 (3%)

Query: 1    VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
            VFDE        V +N++++ +  N   +E +++F +M       +  T++ +L  C + 
Sbjct: 861  VFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEF 920

Query: 61   GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP-EKGLITWNAM 119
            G L LG   H    K GL  +  V N L+ +Y KCGSV+  R++F+++   + +++W ++
Sbjct: 921  GALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSL 980

Query: 120  ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
            I G A NG     LEL+  M+   + P  +T VGVL +C+H G    G     +++ + +
Sbjct: 981  IVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKED-Y 1039

Query: 180  GSNPFLNN--ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGH---GEVA 233
            G +P + +   ++++  R G +++A      MP     V W  ++G   +H     G+VA
Sbjct: 1040 GISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVA 1099

Query: 234  VQLFDEM 240
             +   E+
Sbjct: 1100 WERLVEL 1106



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 101/212 (47%), Gaps = 14/212 (6%)

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           LEL+R   +L   PD  T+  ++ +CA L A   G  +  +   NGF +  F+ N+L+++
Sbjct: 792 LELHRRRLAL---PDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHL 848

Query: 193 YARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           Y  CG  + A  +FD MP   + +VSW +++  +  +G     + +F EML     PDG 
Sbjct: 849 YGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGF 908

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
             VSVL+AC+  G    G    +    K GL         ++DL  + G +N+A  + E 
Sbjct: 909 TIVSVLTACAEFGALALG-RRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEE 967

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGK 342
           M +      W +L+        V LA   FGK
Sbjct: 968 MGLGRTVVSWTSLI--------VGLAANGFGK 991


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/507 (38%), Positives = 310/507 (61%), Gaps = 5/507 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N ++ G+V +    EA+  + +M E+GV+ ++ T   LL  C     +  GM  H   +
Sbjct: 56  FNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHIL 115

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K GL+ D  V N L++MY KCG +     +F+Q+ E+ + +W+A+I+ +A  G+ +  L 
Sbjct: 116 KLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLR 175

Query: 135 LYREMKSLGVC-PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
           L  +M + G    +    V VLS+C HLGA  +G  V   +  N  G N  +  +LI MY
Sbjct: 176 LLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMY 235

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
            +CG L K   +F  M +K  +S++ +I G  +HG+G   +++F EML+ G+ PD   +V
Sbjct: 236 LKCGXLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYV 295

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
            VL+ACSHAGL  +GL+ F  MK ++G++P  +HY CMVDL+GRAG+++EALELI+SM +
Sbjct: 296 GVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPM 355

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
           EP+  +W +LL A K+H N++  E+A  ++ KL+      YV+LSN+Y++A+  + + R 
Sbjct: 356 EPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVART 415

Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ----EHDG 429
           R  M  + L + PG+S VE+K ++H F+  D  H Q+  +Y ML ++E  ++      D 
Sbjct: 416 RTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYXPDT 475

Query: 430 TKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKI 489
           T+     + EE       HS+KLAIA+ +I+TS G+ + +++NLR+C DCH + KL+S I
Sbjct: 476 TQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPVRIVRNLRMCNDCHTYTKLISII 535

Query: 490 VDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DR+  VRD  RFHHFK G CSC+DYW
Sbjct: 536 FDREITVRDRHRFHHFKDGACSCRDYW 562


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/520 (39%), Positives = 300/520 (57%), Gaps = 6/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE    +  TV + ALI+ Y+    + EAV +       G+  +S T + +L  C   
Sbjct: 128 VFDEMPHPS--TVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARI 185

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G        + G+     V    + +YVKCG +   R++FD++  K  + W AM+
Sbjct: 186 ADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMV 245

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GYA NG     L+L+  M++ G+ PD     G LS+C  LGA  +G +  + +  + F 
Sbjct: 246 GGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFL 305

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            NP L  ALI+MYA+CG+  +A  +F  M +K ++ W A+I G G+ GH ++A  L  +M
Sbjct: 306 DNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQM 365

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            KSG++ +   F+ +L +C+H GL   G  YF+ M   Y + P  EHY CMVDLL RAG 
Sbjct: 366 EKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGL 425

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L EA +L++ M +  +  + GALLG CKIH+N ELAE    ++I LEP N+G YV+LSNI
Sbjct: 426 LQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNI 485

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK- 419
           YS     +   ++R+ M+ + ++K P  S+VE +G+VH F VGD++H  + +IY+ LD+ 
Sbjct: 486 YSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDEL 545

Query: 420 -LENLVQEHDGTKRSDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
            LE     ++ T      + E+   +  +  HSEKLAIAF ++ T PG  I V KNLR+C
Sbjct: 546 GLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVC 605

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DCH  IKLVS+I  R+ IVRD  RFH F+ G CSC DYW
Sbjct: 606 SDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 131/265 (49%), Gaps = 2/265 (0%)

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
           P  L  G   H   +K     +  V   L+++Y KCG +   +++FD++P    + W A+
Sbjct: 84  PHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTAL 143

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I+ Y   G     + + R   + G+ PD+ T V VL++CA +   + G  V +  +  G 
Sbjct: 144 ITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGV 203

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             + F+  A +++Y +CG + KAR +FD M  K  V+W A++GGY  +GH   A+ LF  
Sbjct: 204 AQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLA 263

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M   G++PD  A    LSAC+  G  D G +    M +       P   T ++D+  + G
Sbjct: 264 MQAEGMKPDCYAVAGALSACTRLGALDLGRQAIR-MVDWDEFLDNPVLGTALIDMYAKCG 322

Query: 300 QLNEALELIESMLVEPDGAVWGALL 324
              EA  + + M  + D  VW A++
Sbjct: 323 STVEAWVVFQQMR-KKDIIVWNAMI 346


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/509 (40%), Positives = 298/509 (58%), Gaps = 10/509 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           ++ +IS +  +    +A+ +F +MR   V  N  T   +L    D   L L    H   +
Sbjct: 216 WSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHAL 275

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K GL  D  V N LM  Y KCG ++   +LF+ + ++  ++WN +I  Y Q G     L 
Sbjct: 276 KAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALS 335

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+  M    V    VT+  +L +CA L A  +GL+V        +G +  + NALI+MYA
Sbjct: 336 LFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYA 395

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG++K AR +FD +  +  VSW AII GY +HG G  A+++F+ M ++  +PD   FV 
Sbjct: 396 KCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVG 455

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VLSACS+ G  D+G +YF  MK  YG++P  EHYTCMV L+GR+G L++A++ IE +  E
Sbjct: 456 VLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFE 515

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
           P   +W ALLGAC IH +VEL  ++  +V++LEP +   +VLLSNIY+ AR    +  VR
Sbjct: 516 PSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYARARRWGNVAYVR 575

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD 434
             M+ + +KK+PG S++E +G VH F V D +H     I  ML+ L N+     G   S 
Sbjct: 576 KHMKRKGVKKEPGLSWIENQGNVHCFTVADTSHADLKLINGMLEFL-NMKTRKAGY--SP 632

Query: 435 QKNS-------EEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           Q N+       +E      +HSE+LA+AFG++    G  I ++KNLRIC DCH  IKL+S
Sbjct: 633 QLNAVLLDVEDDEKERLLWLHSERLALAFGLVRMPAGCPIRIIKNLRICVDCHSVIKLIS 692

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KIV R  IVRD  RFHHF++G CSC DYW
Sbjct: 693 KIVGRDIIVRDMNRFHHFENGSCSCADYW 721



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 163/331 (49%), Gaps = 6/331 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE   S+   V +  +I+ Y  N   SEA+  F +MR  G + N+ T   +L  C+  
Sbjct: 103 VFDEI--SSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGL 160

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
                G   HC  +K   + D  VG  L+ +Y +CG  D   + F  +P+  +I W+ MI
Sbjct: 161 QNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMI 220

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           S +AQ+G +   LE++ +M+   V P+  TF  VL + A + +  +   +       G  
Sbjct: 221 SRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLS 280

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           ++ F++NAL+  YA+CG ++++  +F+ +  +  VSW  II  Y   G GE A+ LF  M
Sbjct: 281 TDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNM 340

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           L+  ++     + S+L AC+     + GL+ +    K  YG      +   ++D+  + G
Sbjct: 341 LRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGN--ALIDMYAKCG 398

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIH 330
            + +A  + + ML   D   W A++    +H
Sbjct: 399 SIKDARFMFD-MLDLRDKVSWNAIICGYSMH 428



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 153/324 (47%), Gaps = 4/324 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  +    TV +  LI GY  ++   EA  LF ++  +G E+N      +L + V  
Sbjct: 2   VFDEMPERN--TVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSM 59

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
            +  LG   H   +K G   +  +G  L+  Y   G V   R++FD++  K +++W  MI
Sbjct: 60  EWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMI 119

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           + YA+N   +  LE + +M+  G  P+  TF GVL +C  L     G  V   +    + 
Sbjct: 120 ASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYE 179

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            + ++   L+ +Y RCG+   A   F  MP+  V+ W+ +I  +   G  E A+++F +M
Sbjct: 180 RDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQM 239

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            ++ + P+   F SVL A +     D   +  +G   K GL         ++    + G 
Sbjct: 240 RRAFVIPNQFTFSSVLQASADIESLDLS-KTIHGHALKAGLSTDVFVSNALMACYAKCGC 298

Query: 301 LNEALELIESMLVEPDGAVWGALL 324
           + +++EL E+ L + +   W  ++
Sbjct: 299 IEQSMELFEA-LSDRNDVSWNTII 321



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 116/223 (52%), Gaps = 4/223 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +I  YV       A+SLF  M    V+   VT   +L  C     L LG+  HC+
Sbjct: 315 VSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCL 374

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K     D +VGN L+ MY KCGS+   R +FD +  +  ++WNA+I GY+ +GL    
Sbjct: 375 TAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEA 434

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           ++++  MK     PD +TFVGVLS+C++ G    G +    ++ + +G  P + +   ++
Sbjct: 435 IKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQD-YGIEPCMEHYTCMV 493

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEV 232
            +  R GNL +A    + +P   +V+ W A++G   IH   E+
Sbjct: 494 WLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVEL 536


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/523 (37%), Positives = 302/523 (57%), Gaps = 12/523 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +  +  V YN +I+ Y  N   +  + LF +M++ G +   +    +L +    
Sbjct: 293 LFDEMPERDN--VSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSL 350

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             + +G   H   V  GL  +  +GN L+ MY KCG +D  +  F    EK  I+W A+I
Sbjct: 351 PDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALI 410

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GY QNG     L+L+ +M+  G+ PD  TF  ++ + + L    +G ++   +  +G+ 
Sbjct: 411 TGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYK 470

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S+ F  + L++MYA+CG L +A   FD MP +  +SW A+I  Y  +G  + A+++F+ M
Sbjct: 471 SSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGM 530

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           L  G  PD   F+SVL+ACSH GL D+ ++YF+ MK++Y + P  EHY C++D LGR G 
Sbjct: 531 LHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGC 590

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
            ++  +++  M  + D  +W ++L +C+IH N ELA +A  K+  +EP +   YV+LSNI
Sbjct: 591 FSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNI 650

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+ A   +    V+ +MR+R ++K+ GYS+VE+K +++ F   D       EI    D+L
Sbjct: 651 YARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIK---DEL 707

Query: 421 ENLVQEHDGTKRSDQKNSEEHLNDTEV-------HSEKLAIAFGIINTSPGTEIVVMKNL 473
           + L +E D            H+ D E+       HSE+LAIAF ++NT  GT I +MKNL
Sbjct: 708 DRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNL 767

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
             C DCH  IK++SKIV+R  IVRD+ RFHHFK G CSC DYW
Sbjct: 768 TACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 810



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 102/315 (32%), Positives = 165/315 (52%), Gaps = 2/315 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V YNA++ G     L ++A+ LF  MR  G+     T   +L +     +L LG   H 
Sbjct: 201 AVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHA 260

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + ++    L+  V N L+  Y KC  +D  R+LFD++PE+  +++N +I+ YA N  A  
Sbjct: 261 LVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAAT 320

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
           VL L+REM+ LG     + +  +LS    L    +G ++  Q+   G  S   L NALI+
Sbjct: 321 VLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALID 380

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY++CG L  A++ F     K+ +SWTA+I GY  +G  E A+QLF +M ++G+RPD   
Sbjct: 381 MYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRAT 440

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F S++ A S   +   G +  +    + G +      + +VD+  + G L+EAL   + M
Sbjct: 441 FSSIIKASSSLAMIGLGRQ-LHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEM 499

Query: 312 LVEPDGAVWGALLGA 326
             E +   W A++ A
Sbjct: 500 -PERNSISWNAVISA 513



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 106/418 (25%), Positives = 178/418 (42%), Gaps = 69/418 (16%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLL--PICVDPGYLWLGMCC 69
              +  ++  +      S+A+SLF  M  +GV  + VT+  +L  P C  P         
Sbjct: 105 ATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPS-------L 157

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   +KFGLD    V N L+  Y K G +   R++F ++ +K  +T+NAM+ G ++ GL 
Sbjct: 158 HPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLH 217

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
           T  L+L+  M+  G+     TF  +L+  A +    +G +V   +  +    N F+NN+L
Sbjct: 218 TQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSL 277

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK------- 242
           ++ Y++C  L   R +FD MP +  VS+  II  Y  +      ++LF EM K       
Sbjct: 278 LDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQV 337

Query: 243 ---------SGIRPD----------------------GTAFVSVLSACSHAGLTDKGLEY 271
                    +G  PD                      G A + + S C   G+ D     
Sbjct: 338 LPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKC---GMLDAAKSN 394

Query: 272 FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGACK 328
           F     K  +      +T ++    + GQ  EAL+L   M    + PD A + +++ A  
Sbjct: 395 FSNRSEKSAIS-----WTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASS 449

Query: 329 IHKNVELAELAFGKVIKLEPMNTGYY------VLLSNIYSEARNLDGIMRVRMMMRER 380
                 LA +  G+ +    + +GY        +L ++Y++   LD  +R    M ER
Sbjct: 450 -----SLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPER 502



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 9/177 (5%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N +++ Y   G +   + LF   P +   TW  M+  +A  G  +  L L+R M   GV 
Sbjct: 78  NLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVI 137

Query: 146 PDAVTFVGVLS--SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
           PD VT   VL+   C     H   ++        G  ++ F+ N L++ Y + G L  AR
Sbjct: 138 PDRVTVTTVLNLPGCTVPSLHPFAIKF-------GLDTHVFVCNTLLDAYCKHGLLAAAR 190

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
            +F  M  K  V++ A++ G    G    A+QLF  M ++GI      F S+L+  +
Sbjct: 191 RVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAA 247



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 7/146 (4%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           N F  N +++ Y+  G+L  A+ +F   P +   +WT ++  +   G    A+ LF  ML
Sbjct: 73  NIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAML 132

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301
             G+ PD     +VL+     G T   L  F     K+GL         ++D   + G L
Sbjct: 133 GEGVIPDRVTVTTVLNL---PGCTVPSLHPF---AIKFGLDTHVFVCNTLLDAYCKHGLL 186

Query: 302 NEALELIESMLVEPDGAVWGALLGAC 327
             A  +   M  + D   + A++  C
Sbjct: 187 AAARRVFLEMH-DKDAVTYNAMMMGC 211



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 5/100 (5%)

Query: 197 GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL 256
           G+L +ARA+FD MP K + S   I+  Y   G    A  LF   L S  R + T +  ++
Sbjct: 57  GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLF---LSSPHR-NATTWTIMM 112

Query: 257 SACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
            A + AG T   L  F  M  + G+ P     T +++L G
Sbjct: 113 RAHAAAGRTSDALSLFRAMLGE-GVIPDRVTVTTVLNLPG 151


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/520 (39%), Positives = 300/520 (57%), Gaps = 6/520 (1%)

Query: 1    VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
            VFDE    +  TV + ALI+ Y+    + EAV +       G+  +S T + +L  C   
Sbjct: 583  VFDEMPHPS--TVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARI 640

Query: 61   GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
              L  G        + G+     V    + +YVKCG +   R++FD++  K  + W AM+
Sbjct: 641  ADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMV 700

Query: 121  SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
             GYA NG     L+L+  M++ G+ PD     G LS+C  LGA  +G +  + +  + F 
Sbjct: 701  GGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFL 760

Query: 181  SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
             NP L  ALI+MYA+CG+  +A  +F  M +K ++ W A+I G G+ GH ++A  L  +M
Sbjct: 761  DNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQM 820

Query: 241  LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
             KSG++ +   F+ +L +C+H GL   G  YF+ M   Y + P  EHY CMVDLL RAG 
Sbjct: 821  EKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGL 880

Query: 301  LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
            L EA +L++ M +  +  + GALLG CKIH+N ELAE    ++I LEP N+G YV+LSNI
Sbjct: 881  LQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNI 940

Query: 361  YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK- 419
            YS     +   ++R+ M+ + ++K P  S+VE +G+VH F VGD++H  + +IY+ LD+ 
Sbjct: 941  YSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDEL 1000

Query: 420  -LENLVQEHDGTKRSDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
             LE     ++ T      + E+   +  +  HSEKLAIAF ++ T PG  I V KNLR+C
Sbjct: 1001 GLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVC 1060

Query: 477  GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
             DCH  IKLVS+I  R+ IVRD  RFH F+ G CSC DYW
Sbjct: 1061 SDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1100



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 131/265 (49%), Gaps = 2/265 (0%)

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
           P  L  G   H   +K     +  V   L+++Y KCG +   +++FD++P    + W A+
Sbjct: 539 PHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTAL 598

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I+ Y   G     + + R   + G+ PD+ T V VL++CA +   + G  V +  +  G 
Sbjct: 599 ITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGV 658

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             + F+  A +++Y +CG + KAR +FD M  K  V+W A++GGY  +GH   A+ LF  
Sbjct: 659 AQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLA 718

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M   G++PD  A    LSAC+  G  D G +    M +       P   T ++D+  + G
Sbjct: 719 MQAEGMKPDCYAVAGALSACTRLGALDLGRQAIR-MVDWDEFLDNPVLGTALIDMYAKCG 777

Query: 300 QLNEALELIESMLVEPDGAVWGALL 324
              EA  + + M  + D  VW A++
Sbjct: 778 STVEAWVVFQQMR-KKDIIVWNAMI 801


>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/510 (40%), Positives = 312/510 (61%), Gaps = 10/510 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQG--VEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           +NA+I G  L+S  + AV  +  M        I+++T    L  C         +  H  
Sbjct: 69  WNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALARSEAIQLHSQ 128

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++FG + D  +   L+  Y K G +D  +KLFD++P+  + +WNA+I+G+AQ       
Sbjct: 129 LLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPADA 188

Query: 133 LELYREMKSLG-VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
           +  ++ MK  G + P+AVT  G L +C+ LGA   G  V + I      SN  + N +I+
Sbjct: 189 IMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLNSNVQVCNVVID 248

Query: 192 MYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           MYA+CG++ KA  +F+ M   K++++W  +I  + +HG G  A+ LF+++ +SG+ PD  
Sbjct: 249 MYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAV 308

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
           ++++VL AC+HAGL + GL+ F  M  + GL+P  +HY  MVDLLGRAG+L EA +++ S
Sbjct: 309 SYLAVLCACNHAGLVEDGLKLFNSMTQR-GLEPNIKHYGSMVDLLGRAGRLKEAYDIVSS 367

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
            L  P+  +W  LLGAC+ + +VE+AELA  K++++  ++ G +VLLSN+Y+  +  D +
Sbjct: 368 -LPFPNMVLWQTLLGACRTYGDVEMAELASRKLVEMGFISCGDFVLLSNVYAARQRWDDV 426

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH--- 427
            RVR  MR R +KK PG+SY+E+KG+++ F+ GD++H    EIY  LD++   ++ +   
Sbjct: 427 GRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGDQSHSSCREIYAKLDEINLRIKAYGYS 486

Query: 428 -DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
            D +        E+  N    HSEKLA+AFG+  T  GT I V+KNLRICGDCH+ IKL+
Sbjct: 487 ADTSNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPIQVIKNLRICGDCHVVIKLI 546

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SKI  R+ IVRD TRFH FK G CSCKDYW
Sbjct: 547 SKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 137/309 (44%), Gaps = 9/309 (2%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCP--DAVTFVG 153
           G + Y   +F  +P      WNA+I G A +    + +  YR M +       DA+T   
Sbjct: 49  GDLSYALHIFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSF 108

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
            L +CA   A S  +++  Q+   GF ++  L   L++ YA+ G+L  A+ +FD MP+  
Sbjct: 109 ALKACARALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPD 168

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG-IRPDGTAFVSVLSACSHAGLTDKGLEYF 272
           + SW A+I G+        A+  F  M   G +RP+       L ACS  G   +G E  
Sbjct: 169 IASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEG-ESV 227

Query: 273 YGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKN 332
           +    +  L    +    ++D+  + G +++A  + E+M  +     W  ++ A  +H +
Sbjct: 228 HKYIVEEKLNSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGD 287

Query: 333 VELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGY-- 388
              A   F K+ +  + P    Y  +L          DG +++   M +R L+ +  +  
Sbjct: 288 GHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDG-LKLFNSMTQRGLEPNIKHYG 346

Query: 389 SYVELKGRV 397
           S V+L GR 
Sbjct: 347 SMVDLLGRA 355


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/544 (37%), Positives = 314/544 (57%), Gaps = 51/544 (9%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           + A I+   +N L  +A  L+ ++    +  N  T   +L  C        G   H   +
Sbjct: 96  FTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSILKSCSTKS----GKLIHTHVL 151

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT------------------- 115
           KFGL LD  V   L+ +Y K G V   +K+FD++PE+ L++                   
Sbjct: 152 KFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARA 211

Query: 116 ------------WNAMISGYAQNGLATHVLELYREMKSLGVC-PDAVTFVGVLSSCAHLG 162
                       WN MI GY+Q+G  +  L L++++ + G   PD +T V  LS+C+ +G
Sbjct: 212 LFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIG 271

Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIG 222
           A   G  +   + ++    N  +  ALI+MY++CG+L++A  +F+  PRK +V+W A+I 
Sbjct: 272 ALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIT 331

Query: 223 GYGIHGHGEVAVQLFDEMLK-SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281
           GY +HG+ + A++LFDEM   +G++P    F+  L AC+HAGL ++G++ F  M  +YG+
Sbjct: 332 GYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGI 391

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNV----ELAE 337
           +P  EHY C+V LLGRAGQL  A E+I++M +E D  +W ++LG+CK+H       E+AE
Sbjct: 392 KPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAE 451

Query: 338 LAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRV 397
              G+ I     N+G YVLLSNIY+   + +G+ +VR +M+E+ + K+PG S +E+  +V
Sbjct: 452 YLIGQNIS----NSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKV 507

Query: 398 HLFMVGDRNHHQTVEIYRMLDKLENLVQEH-----DGTKRSDQKNSEEHLNDTEVHSEKL 452
           H F  GDR H ++ EIY ML K+   ++ H       T   D + +E+     +VHSE+L
Sbjct: 508 HEFRAGDREHLKSKEIYTMLRKMSERIKSHGYVPNTNTVLHDLEETEKE-RSLQVHSERL 566

Query: 453 AIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSC 512
           AIA+G+I+T PG+ + + KNLR+C DCH   KL+SKI  R+ ++RD  RFHHF  G CSC
Sbjct: 567 AIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFSDGSCSC 626

Query: 513 KDYW 516
            D+W
Sbjct: 627 DDFW 630



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 126/242 (52%), Gaps = 6/242 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +N +I GY  +   S+A+ LF K+   G  + + +T++  L  C   G L  G   H 
Sbjct: 222 VSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHV 281

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                 + L+  V   L+ MY KCGS++    +F+  P K ++ WNAMI+GYA +G +  
Sbjct: 282 FVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQD 341

Query: 132 VLELYREMKSL-GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--A 188
            L L+ EM+ + G+ P  +TF+G L +CAH G  + G+++ + +    +G  P + +   
Sbjct: 342 ALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESM-GQEYGIKPKIEHYGC 400

Query: 189 LINMYARCGNLKKARAIFDGMPRKT-VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           L+++  R G LK+A  I   M  +   V W++++G   +HG   +  ++ + ++   I  
Sbjct: 401 LVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNISN 460

Query: 248 DG 249
            G
Sbjct: 461 SG 462



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 119/275 (43%), Gaps = 38/275 (13%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L   Y   G + +   LF Q  +  L  + A I+  + NGL      LY ++ S  + P+
Sbjct: 68  LHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPN 127

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
             TF  +L SC+       G  +   +   G G +P++   L+++YA+ G++  A+ +FD
Sbjct: 128 EFTFSSILKSCST----KSGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFD 183

Query: 208 GMPRKT-------------------------------VVSWTAIIGGYGIHGHGEVAVQL 236
            MP ++                               +VSW  +I GY  HG    A+ L
Sbjct: 184 RMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALML 243

Query: 237 FDEMLKSG-IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295
           F ++L  G  +PD    V+ LSACS  G  + G  + +   N   ++   +  T ++D+ 
Sbjct: 244 FQKLLADGKPKPDEITVVAALSACSQIGALETG-RWIHVFVNSSRIRLNVKVCTALIDMY 302

Query: 296 GRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
            + G L EA+ L+ +     D   W A++    +H
Sbjct: 303 SKCGSLEEAV-LVFNDTPRKDIVAWNAMITGYAMH 336



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 92/205 (44%), Gaps = 12/205 (5%)

Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
           P LN  L   YA  G ++ + A+F       +  +TA I    I+G  + A  L+ ++L 
Sbjct: 62  PVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLS 121

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
           S I P+   F S+L +CS      K  +  +    K+GL   P   T +VD+  + G + 
Sbjct: 122 SQINPNEFTFSSILKSCS-----TKSGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVV 176

Query: 303 EALELIESMLVEPDGAVWG--ALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
            A ++ + M   P+ ++    A++       NVE A   F ++ + + ++  + V++   
Sbjct: 177 SAQKVFDRM---PERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVS--WNVMIDGY 231

Query: 361 YSEARNLDGIMRVRMMMRERRLKKD 385
                  D +M  + ++ + + K D
Sbjct: 232 SQHGFPSDALMLFQKLLADGKPKPD 256


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/545 (35%), Positives = 309/545 (56%), Gaps = 49/545 (8%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+ISGYV + + ++A  LF +M  + V ++  T   +L  C + G+   G   H  
Sbjct: 264 VVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQ 323

Query: 73  CVK----FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA---------- 118
            ++    F  +    V N L+T+Y K G +   +++FD +  K +++WN           
Sbjct: 324 IIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGC 383

Query: 119 ---------------------MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
                                M+SGY   GL+   L+L+ +M++  V P   T+ G +++
Sbjct: 384 LDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAA 443

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
           C  LGA   G ++   +   GF ++    NAL+ MYA+CG +  AR +F  MP    VSW
Sbjct: 444 CGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSW 503

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
            A+I   G HGHG  A++LFD+M+  GI PD  +F+++L+AC+HAGL D+G  YF  MK 
Sbjct: 504 NAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKR 563

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
            +G+ PG +HY  ++DLLGR+G++ EA +LI++M  EP  ++W A+L  C+ + ++E   
Sbjct: 564 DFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGA 623

Query: 338 LAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRV 397
            A  ++ ++ P + G Y+LLSN YS A       RVR +MR+R +KK+PG S++E+  ++
Sbjct: 624 YAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKI 683

Query: 398 HLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTE---------VH 448
           H+F+VGD  H +  E+Y+ L+ +   ++     K     +++  L+D E          H
Sbjct: 684 HVFLVGDTKHPEAQEVYQFLEVIGARMR-----KLGYVPDTKFVLHDMEPHEKEYILFAH 738

Query: 449 SEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSG 508
           SEKLA+ FG++   PG  + V+KNLRICGDCH  +  +SK V R+ +VRD  RFHHFK G
Sbjct: 739 SEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDG 798

Query: 509 FCSCK 513
            CSC+
Sbjct: 799 ECSCE 803



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 154/347 (44%), Gaps = 46/347 (13%)

Query: 2   FDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDP 60
           FD    +   TV +NA++S +   SL + AVS+F  +   G +  +  +   L+      
Sbjct: 115 FDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQM 174

Query: 61  GYLWLGMCC--HCICVKFGLDLDFSVGNCLMTMYVKC----------------------- 95
             L    C   HC  +K G     SV N L+ +Y+KC                       
Sbjct: 175 HNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLT 234

Query: 96  -----------GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGV 144
                      G V+  R +F++V  K  + WNAMISGY Q+G+     EL+R M S  V
Sbjct: 235 WTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKV 294

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQI---QANGFGSNPF-LNNALINMYARCGNLK 200
             D  TF  VLS+CA+ G    G  V  QI   Q N        +NNAL+ +Y++ G + 
Sbjct: 295 PLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIV 354

Query: 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
            A+ IFD M  K VVSW  I+ GY   G  + AV++F  M       +  +++ ++S   
Sbjct: 355 IAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYK----NDLSWMVMVSGYV 410

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           H GL++  L+ F  M+ +  ++P    Y   +   G  G L    +L
Sbjct: 411 HGGLSEDALKLFNQMRAE-DVKPCDYTYAGAIAACGELGALKHGRQL 456


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/511 (40%), Positives = 296/511 (57%), Gaps = 7/511 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           TV + ALI+ Y+      EA+ +  +    G+  +S T + +L  C     L  G     
Sbjct: 6   TVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETGEAVWA 65

Query: 72  ICVKF-GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
              +  G+     V    + +YVKCG ++  R +FD++  +  + W AM+ GYA NG   
Sbjct: 66  AARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYASNGHPR 125

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             L+L+  M+  G  PD  T VG LS+C  LGA  +G +    +  +    NP L  ALI
Sbjct: 126 EALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPVLGTALI 185

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MYA+CG+  +A  +F  M  + ++ W A+I G G+ GH ++A  L  +M KSG++ +  
Sbjct: 186 DMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGVKLNDN 245

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            F+ +L +C+H GL + G +YF+ M + Y + P  EHY CMVDL  RAG L EA +LI  
Sbjct: 246 TFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAGLLEEAHQLIGD 305

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M +  +  VWGALLG CKIH+N +LAE A  ++I+LEP N+G YV+LSNIYS +   +  
Sbjct: 306 MPMLANAVVWGALLGGCKIHRNADLAEHALKQLIRLEPWNSGNYVMLSNIYSNSGRWEDA 365

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL--ENLVQEHD 428
            ++R+ M+ + ++K P  S+VEL G+VH F VGD +H  + +IY  LD+L  E     ++
Sbjct: 366 AKLRLEMKAKGIEKVPASSWVELDGKVHKFYVGDDSHPLSDKIYAKLDELGMEMKAMGYE 425

Query: 429 GTKRS---DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
            T      D +N EE  N    HSEK+AIAF +I T PG  I V KNLR+C DCH  IKL
Sbjct: 426 PTTEVVMFDVEN-EEKENTLVHHSEKIAIAFSLITTEPGETIRVTKNLRVCTDCHSAIKL 484

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +S+I  R+ +VRD  RFH F+ G CSC DYW
Sbjct: 485 ISRITCREIVVRDNNRFHCFRDGHCSCNDYW 515



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 113/218 (51%), Gaps = 3/218 (1%)

Query: 108 VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVG 167
           +P    ++W A+I+ Y   G A   + + R   + G+ PD+ T V VL++CA +     G
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 168 LEVEQQI-QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGI 226
             V     Q  G   + F+  A +++Y +CG ++KAR++FD M  +  V+W A++GGY  
Sbjct: 61  EAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYAS 120

Query: 227 HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPE 286
           +GH   A+ LF  M   G +PD    V  LSAC+  G  D G +   GM +   +   P 
Sbjct: 121 NGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAV-GMVHWDEVLGNPV 179

Query: 287 HYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
             T ++D+  + G  +EA  + + ML E D  VW A++
Sbjct: 180 LGTALIDMYAKCGSTSEAWMVFQQML-ERDIIVWNAMI 216



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 1/117 (0%)

Query: 209 MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
           MP  + VSWTA+I  Y   GH   A+ +      SG+RPD    V VL+AC+     + G
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 269 LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
              +   + + G+       T  +DL  + G++ +A  + + M    D   WGA++G
Sbjct: 61  EAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEM-KNRDAVAWGAMVG 116


>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
 gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/512 (38%), Positives = 311/512 (60%), Gaps = 8/512 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVE-INSVTMLCLLPICVDPGYLWLGMCCH 70
           T  +N++I G+  +    +A+  + +M    V   ++ T    L  C     L      H
Sbjct: 74  TQAWNSIIRGFAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACERIKALKKCEEVH 133

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
              ++ G + D  V   L+  Y + G V+  R +FD +PE+ L+ WNAMIS Y+Q G   
Sbjct: 134 GSIIRTGYERDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQAGYHQ 193

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             L +Y  M++  V  D  T VG+LSSC+H+GA ++G+++ +     G   N F+ NALI
Sbjct: 194 EALRVYDYMRNENVGVDGFTLVGLLSSCSHVGALNMGVKLHRIASEKGLLRNVFVGNALI 253

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MYA+CG+L  A  +F+GMPR    +W ++I G+G+HG G+ A+  F++ML++G+RP+  
Sbjct: 254 DMYAKCGSLDGALEVFNGMPRDAF-TWNSMIVGFGVHGFGDEAIYFFNQMLEAGVRPNSI 312

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
           AF+ +L  CSH GL ++G+E+F+ M +K+ ++PG +HY C+VD+ GRAG+L +ALE+I  
Sbjct: 313 AFLGLLCGCSHQGLVEEGVEFFHQMSSKFNVKPGIKHYGCIVDMYGRAGKLEKALEIIGD 372

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
              + D  +W  LL + KIHKNV + E+A   + +L  +N G  VLL+ IY+ A +  G+
Sbjct: 373 SPWQDDPVLWRILLSSSKIHKNVVIGEIAMRNLSQLGAVNAGDCVLLATIYAGANDEQGV 432

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
            R+R +++++ +K  PG+S++E+  +VH F+V D++H  +  IY+ L+++ +        
Sbjct: 433 ARMRKLIKKQGIKTTPGWSWIEVSDQVHRFVVDDKSHPDSEMIYQKLEEVTHKATMAGYV 492

Query: 431 KRSDQ-----KNSEEHLNDTEV-HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
           +   Q       SEE L  +   HSEKLAIAFG+  T  GT + ++KNLR+C DCH F K
Sbjct: 493 EDKSQFIFHGSCSEECLESSSTYHSEKLAIAFGLAKTPEGTSLRIVKNLRVCRDCHEFTK 552

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            VS+  +R  IVRD  RFHHFK G CSC+DYW
Sbjct: 553 FVSRAFNRDIIVRDRLRFHHFKGGLCSCRDYW 584



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 152/334 (45%), Gaps = 17/334 (5%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC-PDAVTFVGV 154
           GS+ Y + LF  +       WN++I G+AQ+      +  Y  M    V  PD  TF   
Sbjct: 57  GSLPYAQHLFRHILNPQTQAWNSIIRGFAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFT 116

Query: 155 LSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTV 214
           L +C  + A     EV   I   G+  +  +   L+  Y R G ++ AR +FD MP + +
Sbjct: 117 LKACERIKALKKCEEVHGSIIRTGYERDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDL 176

Query: 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYG 274
           V+W A+I  Y   G+ + A++++D M    +  DG   V +LS+CSH G  + G++  + 
Sbjct: 177 VAWNAMISCYSQAGYHQEALRVYDYMRNENVGVDGFTLVGLLSSCSHVGALNMGVK-LHR 235

Query: 275 MKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVE 334
           + ++ GL         ++D+  + G L+ ALE+   M    D   W +++    +H   +
Sbjct: 236 IASEKGLLRNVFVGNALIDMYAKCGSLDGALEVFNGM--PRDAFTWNSMIVGFGVHGFGD 293

Query: 335 LAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSY-- 390
            A   F ++++  + P +  +  LL     +    +G+     M  +  +K  PG  +  
Sbjct: 294 EAIYFFNQMLEAGVRPNSIAFLGLLCGCSHQGLVEEGVEFFHQMSSKFNVK--PGIKHYG 351

Query: 391 --VELKGRV-----HLFMVGDRNHHQTVEIYRML 417
             V++ GR       L ++GD        ++R+L
Sbjct: 352 CIVDMYGRAGKLEKALEIIGDSPWQDDPVLWRIL 385


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/546 (38%), Positives = 304/546 (55%), Gaps = 45/546 (8%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +NA+I+GY  N L   A+  F +M     +E +  T+  +L  C +   L +G   H 
Sbjct: 261 VSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHS 320

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKL--------------------------- 104
             ++ G+     + N L++ Y K GSV+  R++                           
Sbjct: 321 YILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDT 380

Query: 105 ------FDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC 158
                 FD +  + +I W AMI GY QNG     +EL+R M   G  P++ T   VLS+C
Sbjct: 381 KQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSAC 440

Query: 159 AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM-PRKTVVSW 217
           A L     G ++  +   +    +  ++NA+I +YAR G++  AR +FD +  RK  V+W
Sbjct: 441 ASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTW 500

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
           T++I     HG GE A+ LF+EML+ G++PD   ++ V SAC+HAG  DKG  Y+  M N
Sbjct: 501 TSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLN 560

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
           ++G+ P   HY CMVDLL RAG L EA E I+ M V PD  VWG+LL AC++ KN +LAE
Sbjct: 561 EHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAE 620

Query: 338 LAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRV 397
           LA  K++ ++P N+G Y  L+N+YS     +   R+  + +++ +KK+ G+S+  ++ +V
Sbjct: 621 LAAEKLLSIDPDNSGAYSALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWTHVQSKV 680

Query: 398 HLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEV-------HSE 450
           H+F   D  H Q   I +   K   + +E          NS  H  D E+       HSE
Sbjct: 681 HVFGADDVLHPQRDAICK---KAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSE 737

Query: 451 KLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFC 510
           KLAIAFG+I+T   T + +MKNLR+C DCH  IK +SK+VDR+ IVRDATRFHHF+ G+C
Sbjct: 738 KLAIAFGLISTPEKTTLRIMKNLRVCNDCHTAIKFISKVVDREIIVRDATRFHHFRDGYC 797

Query: 511 SCKDYW 516
           SCKDYW
Sbjct: 798 SCKDYW 803



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/267 (32%), Positives = 135/267 (50%), Gaps = 13/267 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD  + +    + + A+I GY  N    EA+ LF  M   G E NS T+  +L  C   
Sbjct: 386 VFD--VMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASL 443

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV-PEKGLITWNAM 119
            YL  G   HC  ++   +   SV N ++T+Y + GSV   R++FDQ+   K  +TW +M
Sbjct: 444 AYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSM 503

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I   AQ+GL    + L+ EM  +GV PD VT++GV S+C H G    G    +Q+  N  
Sbjct: 504 IVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQM-LNEH 562

Query: 180 GSNPFLNN--ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQL 236
           G  P +++   ++++ AR G L +A      MP     V W +++    +  + ++A +L
Sbjct: 563 GIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLA-EL 621

Query: 237 FDEMLKSGIRPDG----TAFVSVLSAC 259
             E L S I PD     +A  +V SAC
Sbjct: 622 AAEKLLS-IDPDNSGAYSALANVYSAC 647



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 166/401 (41%), Gaps = 68/401 (16%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +  ++ G        +AV  F  M  +G+  +   +  +L  C       +G   H 
Sbjct: 128 AVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHS 187

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMIS---------- 121
             +K GL     V N ++ MY KCG  +  R +F+++  +   +WNAM+S          
Sbjct: 188 FVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDL 247

Query: 122 ---------------------GYAQNGLATHVLELY-REMKSLGVCPDAVTFVGVLSSCA 159
                                GY QNGL    L+ + R + +  + PD  T   VLS+CA
Sbjct: 248 ALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACA 307

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNL-------------------- 199
           +L    +G ++   I   G   +  + NALI+ YA+ G++                    
Sbjct: 308 NLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISF 367

Query: 200 -------------KKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
                        K+AR +FD M  + V++WTA+I GY  +G  + A++LF  M++SG  
Sbjct: 368 TALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPE 427

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYT-CMVDLLGRAGQLNEAL 305
           P+     +VLSAC  A L   G       +    LQ      +  ++ +  R+G +  A 
Sbjct: 428 PNSHTLAAVLSAC--ASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLAR 485

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
            + + +    +   W +++ A   H   E A + F +++++
Sbjct: 486 RVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRV 526



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 119/260 (45%), Gaps = 33/260 (12%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L++MY K G +   R +F Q+PE+  ++W  M+ G  + G     ++ + +M   G+ 
Sbjct: 101 NSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLA 160

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P       VLSSCA   A  +G +V   +   G  S   + N+++ MY +CG+ + ARA+
Sbjct: 161 PSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAV 220

Query: 206 -------------------------------FDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
                                          F+ M  +++VSW AII GY  +G  ++A+
Sbjct: 221 FERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMAL 280

Query: 235 QLFDEMLK-SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293
           + F  ML  S + PD     SVLSAC++  +   G +  +    + G+    +    ++ 
Sbjct: 281 KFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQ-MHSYILRTGMPYSSQIMNALIS 339

Query: 294 LLGRAGQLNEALELIESMLV 313
              ++G +  A  +++  +V
Sbjct: 340 TYAKSGSVETARRIMDKAVV 359



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 4/156 (2%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           N F  N+L++MYA+ G L  AR +F  MP +  VSWT ++ G    G    AV+ F +M+
Sbjct: 96  NAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMV 155

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGL-EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
             G+ P      +VLS+C  A    +G+    +    K GL         ++ + G+ G 
Sbjct: 156 GEGLAPSQFMLTNVLSSC--AATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGD 213

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELA 336
              A  + E M V  + + W A++        ++LA
Sbjct: 214 AETARAVFERMKVRSESS-WNAMVSLYTHQGRMDLA 248


>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
          Length = 1434

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/437 (44%), Positives = 281/437 (64%), Gaps = 6/437 (1%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H I ++ G +    V N L+ MY  CG  +   KLF+ + E+ L+TWN++I+GYA NG  
Sbjct: 18  HSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRP 77

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              L L+REM   GV PD  T V +LS+CA LGA ++G      +   G   N    NAL
Sbjct: 78  NEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNAL 137

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           +++YA+CG++++A  +FD M  K+VVSWT++I G  ++G G+ A++LF E+ + G+ P  
Sbjct: 138 LDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSE 197

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
             FV VL ACSH G+ D+G +YF  MK +YG+ P  EHY CMVDLLGRAG + +A E I+
Sbjct: 198 ITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQ 257

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDG 369
           +M ++P+  VW  LLGAC IH ++ L E+A  ++++LEP ++G YVLLSN+Y+  +    
Sbjct: 258 NMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSD 317

Query: 370 IMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ---- 425
           + +VR  M    +KK PG+S VEL+ R+H F++GDR+H QT EIY  L ++  L++    
Sbjct: 318 VHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGY 377

Query: 426 -EHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
             H     +D +  EE       HSEK+AIAF +INT+ G  I V+KNLR+C DCHL IK
Sbjct: 378 VPHISNVLADIE-EEEKETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIK 436

Query: 485 LVSKIVDRQFIVRDATR 501
           L+SK+ DR+ +VRD +R
Sbjct: 437 LISKVFDREIVVRDRSR 453



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 133/227 (58%), Gaps = 7/227 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++I+GY LN   +EA++LF +M  +GVE +  TM+ LL  C + G L LG   H  
Sbjct: 62  VTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVY 121

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK GLD +   GN L+ +Y KCGS+    K+FD++ EK +++W ++I G A NG     
Sbjct: 122 MVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEA 181

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           LEL++E++  G+ P  +TFVGVL +C+H G    G +  ++++   +G  P + +   ++
Sbjct: 182 LELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEE-YGIVPKIEHYGCMV 240

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGH---GEVA 233
           ++  R G +K+A      MP +   V W  ++G   IHGH   GEVA
Sbjct: 241 DLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVA 287


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/543 (37%), Positives = 308/543 (56%), Gaps = 39/543 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +++G+  N    EAV +F  M  QG   +  T+ C+LP       + +G   H  
Sbjct: 206 VSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGY 265

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK--------------------- 111
            +K GL  D  V + ++ MY KCG V    ++FD+V E                      
Sbjct: 266 VIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTA 325

Query: 112 --------------GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
                          ++TW ++I+  +QNG     LEL+R+M++ GV P+AVT   ++ +
Sbjct: 326 LEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPA 385

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
           C ++ A   G E+       G   + ++ +ALI+MYA+CG ++ AR  FD M    +VSW
Sbjct: 386 CGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSW 445

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
            A++ GY +HG  +  +++F  ML+SG +PD   F  VLSAC+  GLT++G   +  M  
Sbjct: 446 NAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSE 505

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
           ++G++P  EHY C+V LL R G+L EA  +I+ M  EPD  VWGALL +C++H N+ L E
Sbjct: 506 EHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGE 565

Query: 338 LAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRV 397
           +A  K+  LEP N G Y+LLSNIY+     D   R+R +M+ + L+K+PGYS++E+  +V
Sbjct: 566 IAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGHKV 625

Query: 398 HLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEV----HSEKLA 453
           H+ + GD++H Q  +I   LDKL   +++     +++    +    D E     HSEKLA
Sbjct: 626 HMLLAGDQSHPQMKDILEKLDKLNMQMKKSGYLPKTNFVLQDVEEQDKEQILCGHSEKLA 685

Query: 454 IAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCK 513
           +  G++NTSPG  + V+KNLRIC DCH  IK++S++  R+  VRD  RFHHFK G CSC 
Sbjct: 686 VVLGLLNTSPGQPLQVIKNLRICDDCHAVIKVISRLEGREIYVRDTNRFHHFKDGVCSCG 745

Query: 514 DYW 516
           D+W
Sbjct: 746 DFW 748



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 151/339 (44%), Gaps = 40/339 (11%)

Query: 8   STHLT----VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL 63
           S+HL       +++LI  +  +      ++ F  +    +  ++  +   +  C     L
Sbjct: 61  SSHLPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRAL 120

Query: 64  WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGY 123
             G   H      G   D  V + L  MY+KC  +   RKLFD++P++ ++ W+AMI+GY
Sbjct: 121 DPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGY 180

Query: 124 AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHS------------------ 165
           ++ GL     EL+ EM+S GV P+ V++ G+L+   + G +                   
Sbjct: 181 SRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDG 240

Query: 166 -----------------VGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208
                            VG +V   +   G GS+ F+ +A+++MY +CG +K+   +FD 
Sbjct: 241 STVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDE 300

Query: 209 MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
           +    + S  A + G   +G  + A+++F++     +  +   + S++++CS  G   + 
Sbjct: 301 VEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEA 360

Query: 269 LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           LE F  M+  YG++P       ++   G    L    E+
Sbjct: 361 LELFRDMQ-AYGVEPNAVTIPSLIPACGNISALMHGKEI 398



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 113/230 (49%), Gaps = 4/230 (1%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGR---KLFDQVPEKGLITWNAMISGYAQN 126
           H + ++  L  D  +   L++ Y    S+   +    L   +P   L +++++I  +A++
Sbjct: 23  HALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSSLIHAFARS 82

Query: 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
               HVL  +  +  L + PDA      + SCA L A   G ++     A+GF ++  + 
Sbjct: 83  HHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTDSIVA 142

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           ++L +MY +C  +  AR +FD MP + VV W+A+I GY   G  E A +LF EM   G+ 
Sbjct: 143 SSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVE 202

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           P+  ++  +L+   + G  D+ +  F  M  + G  P     +C++  +G
Sbjct: 203 PNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQ-GFWPDGSTVSCVLPAVG 251


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/520 (39%), Positives = 300/520 (57%), Gaps = 6/520 (1%)

Query: 1    VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
            VFDE    +  TV + ALI+ Y+    + EAV +       G+  +S T + +L  C   
Sbjct: 607  VFDEMPHPS--TVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARI 664

Query: 61   GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
              L  G        + G+     V    + +YVKCG +   R++FD++  K  + W AM+
Sbjct: 665  ADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMV 724

Query: 121  SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
             GYA NG     L+L+  M++ G+ PD     G LS+C  LGA  +G +  + +  + F 
Sbjct: 725  GGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFL 784

Query: 181  SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
             NP L  ALI+MYA+CG+  +A  +F  M +K ++ W A+I G G+ GH ++A  L  +M
Sbjct: 785  DNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQM 844

Query: 241  LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
             KSG++ +   F+ +L +C+H GL   G  YF+ M   Y + P  EHY CMVDLL RAG 
Sbjct: 845  EKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGL 904

Query: 301  LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
            L EA +L++ M +  +  + GALLG CKIH+N ELAE    ++I LEP N+G YV+LSNI
Sbjct: 905  LQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNI 964

Query: 361  YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK- 419
            YS     +   ++R+ M+ + ++K P  S+VE +G+VH F VGD++H  + +IY+ LD+ 
Sbjct: 965  YSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDEL 1024

Query: 420  -LENLVQEHDGTKRSDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
             LE     ++ T      + E+   +  +  HSEKLAIAF ++ T PG  I V KNLR+C
Sbjct: 1025 GLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVC 1084

Query: 477  GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
             DCH  IKLVS+I  R+ IVRD  RFH F+ G CSC DYW
Sbjct: 1085 SDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1124



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 131/265 (49%), Gaps = 2/265 (0%)

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
           P  L  G   H   +K     +  V   L+++Y KCG +   +++FD++P    + W A+
Sbjct: 563 PHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTAL 622

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I+ Y   G     + + R   + G+ PD+ T V VL++CA +   + G  V +  +  G 
Sbjct: 623 ITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGV 682

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             + F+  A +++Y +CG + KAR +FD M  K  V+W A++GGY  +GH   A+ LF  
Sbjct: 683 AQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLA 742

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M   G++PD  A    LSAC+  G  D G +    M +       P   T ++D+  + G
Sbjct: 743 MQAEGMKPDCYAVAGALSACTRLGALDLGRQAIR-MVDWDEFLDNPVLGTALIDMYAKCG 801

Query: 300 QLNEALELIESMLVEPDGAVWGALL 324
              EA  + + M  + D  VW A++
Sbjct: 802 STVEAWVVFQQMR-KKDIIVWNAMI 825


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/486 (42%), Positives = 295/486 (60%), Gaps = 9/486 (1%)

Query: 39  REQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSV 98
           R      ++ T   LL  C     L  G   H    K GL     V N L+ +Y  CG  
Sbjct: 114 RRHLAPPDTHTYPPLLQACARLLALRYGEGLHAEACKNGLVSLVFVKNSLVHLYGACGLF 173

Query: 99  DYGRKLFDQVP--EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS 156
           +   ++FD++P  E+ L++WN++++G+A NG    VL ++REM  +   PD  T V VL+
Sbjct: 174 ESAHRVFDEIPPPERNLVSWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLT 233

Query: 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR-KTVV 215
           +CA +G  ++G  V   +   G   N    NALI++YA+CG +  AR +F  M   +TVV
Sbjct: 234 ACAEIGVLALGRRVHVFVAKVGLVGNAHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVV 293

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           SWT++I G  ++G G  A+QLF  M +  + P     V VL ACSH GL D G  YF  M
Sbjct: 294 SWTSLIVGLAVNGFGMDALQLFSMMEREKLMPTEITMVGVLYACSHCGLVDDGFRYFDQM 353

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVEL 335
           K +YG+ P  EH  CMVDLLGRAG++ EA   I +M +EP+  VW  LLGAC +HK +E+
Sbjct: 354 KAEYGITPRIEHLGCMVDLLGRAGRVEEAHNYITTMPLEPNAVVWRTLLGACAMHKKLEI 413

Query: 336 AELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKG 395
            E A+ ++++L+P ++G YVLLSN+Y+       +  +R  M    ++K+PG+S VEL+ 
Sbjct: 414 GEAAWARLVELDPGHSGDYVLLSNLYAGVGRWADVHVLRKTMVTHGVRKNPGHSLVELRN 473

Query: 396 RVHLFMVGDRNHHQTVEIYRML-DKLENLVQE----HDGTKRSDQKNSEEHLNDTEVHSE 450
            V+ F++GDR+H +T +IY ML D  E L ++    H     +D ++ EE  +    HSE
Sbjct: 474 SVYEFVMGDRSHPETDQIYEMLGDIAERLRRQGYIPHTSNVLADIED-EEKESALNYHSE 532

Query: 451 KLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFC 510
           +LAIAF ++ + PGT I ++KNLR+CGDCH+ IKL+SK+ DR+ IVRD +RFHHFK G C
Sbjct: 533 RLAIAFALLKSLPGTPIRIVKNLRVCGDCHMAIKLISKVYDREIIVRDRSRFHHFKGGAC 592

Query: 511 SCKDYW 516
           SCKDYW
Sbjct: 593 SCKDYW 598



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 119/236 (50%), Gaps = 5/236 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE        V +N++++G+  N   +E +++F +M E     +  T++ +L  C + 
Sbjct: 179 VFDEIPPPERNLVSWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEI 238

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV-PEKGLITWNAM 119
           G L LG   H    K GL  +   GN L+ +Y KCG VD  RK+F ++   + +++W ++
Sbjct: 239 GVLALGRRVHVFVAKVGLVGNAHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSL 298

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I G A NG     L+L+  M+   + P  +T VGVL +C+H G    G     Q++A  +
Sbjct: 299 IVGLAVNGFGMDALQLFSMMEREKLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAE-Y 357

Query: 180 GSNPFLNN--ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEV 232
           G  P + +   ++++  R G +++A      MP     V W  ++G   +H   E+
Sbjct: 358 GITPRIEHLGCMVDLLGRAGRVEEAHNYITTMPLEPNAVVWRTLLGACAMHKKLEI 413



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 104/219 (47%), Gaps = 6/219 (2%)

Query: 108 VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVG 167
           +P     + N ++  +A +      L L+R   +    PD  T+  +L +CA L A   G
Sbjct: 85  LPSPDPFSLNTVLRIFASSARPRVALALHRRHLA---PPDTHTYPPLLQACARLLALRYG 141

Query: 168 LEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM--PRKTVVSWTAIIGGYG 225
             +  +   NG  S  F+ N+L+++Y  CG  + A  +FD +  P + +VSW +++ G+ 
Sbjct: 142 EGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVLNGFA 201

Query: 226 IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
            +G     + +F EML+    PDG   VSVL+AC+  G+   G    +    K GL    
Sbjct: 202 ANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALG-RRVHVFVAKVGLVGNA 260

Query: 286 EHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
                ++DL  + G +++A ++   M V      W +L+
Sbjct: 261 HAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLI 299


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/509 (37%), Positives = 290/509 (56%), Gaps = 5/509 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V YN +I+GY  N    ++  LF +++    +  +     +L +      L +G   H  
Sbjct: 311 VSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQ 370

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            V      +  VGN L+ MY KC   +   ++F  +  +  + W A+IS Y Q G     
Sbjct: 371 AVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEA 430

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L++++EM    V  D  TF   L + A+L + S+G ++   +   G  S+ F  + L++M
Sbjct: 431 LKMFKEMNRENVHGDQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDM 490

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA CG++K A  +F  MP + +V W A+I  Y  +G  E     F +M++SG+ PD  +F
Sbjct: 491 YANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSF 550

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +SVL+ACSH GL +K L YF  M   Y L P  +HY  M+D+L R+G+ NEA  LI  M 
Sbjct: 551 LSVLTACSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAENLISEMP 610

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPM-NTGYYVLLSNIYSEARNLDGIM 371
            EPD  +W ++L +C+IHKN +LA+ A  ++ K++ + +   YV +SNIY+EA   +   
Sbjct: 611 FEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEAGKWENAA 670

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH---- 427
           +V+  MRER +KK   YS+VE+  RVH+F   DR H QT +I R ++ L  L+ +     
Sbjct: 671 KVKKAMRERGVKKVTAYSWVEIDHRVHVFTANDRTHPQTEQIRRKINSLVELMDKEGYKP 730

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           D +      + E  +   + HSE+LAIAF +INT  G+ I++MKNLR C DCH  IK++S
Sbjct: 731 DTSCTLQNVDEEMKIESLKYHSERLAIAFALINTPEGSPIIIMKNLRACVDCHAAIKVIS 790

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KIV R+  VRD++RFHHF+ G CSC DYW
Sbjct: 791 KIVGREITVRDSSRFHHFRDGSCSCGDYW 819



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 162/354 (45%), Gaps = 8/354 (2%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           T  +V +N +I+GY       EA+ LF +MR    + +  T   +L + V    +  G  
Sbjct: 206 TKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQ 265

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            H + +K     D  V N L+  Y K   +D  + LFD++PE   +++N +I+GYA NG 
Sbjct: 266 IHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQ 325

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
                +L++ ++          F  +LS  A     S+G +   Q       S   + NA
Sbjct: 326 YEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNA 385

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           L++MYA+C   + A  IF  +  +  V WTAII  Y   G  E A+++F EM +  +  D
Sbjct: 386 LVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGD 445

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
              F S L A ++      G +  +    + GL       + +VD+    G + +A+E+ 
Sbjct: 446 QATFASTLKASANLASVSLGKQ-LHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVF 504

Query: 309 ESMLVEPDGAV--WGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
           + M   PD  +  W AL+ A   + + E    +F  +I+  L P +  +  +L+
Sbjct: 505 KEM---PDRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLT 555



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 127/269 (47%), Gaps = 2/269 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V + A+IS YV      EA+ +F +M  + V  +  T    L    +   + LG   H 
Sbjct: 411 SVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASANLASVSLGKQLHS 470

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             ++ GL      G+ L+ MY  CGS+    ++F ++P++ ++ WNA+IS Y+QNG A  
Sbjct: 471 SVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEA 530

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGL-EVEQQIQANGFGSNPFLNNALI 190
               + +M   G+ PD+V+F+ VL++C+H G     L       Q             +I
Sbjct: 531 TFSSFADMIESGLYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMI 590

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++  R G   +A  +   MP     V W++++    IH + ++A +  D++ K     D 
Sbjct: 591 DVLCRSGRFNEAENLISEMPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFKMDALRDA 650

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNK 278
            A+V++ +  + AG  +   +    M+ +
Sbjct: 651 AAYVNMSNIYAEAGKWENAAKVKKAMRER 679



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 119/250 (47%), Gaps = 4/250 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  +I GY  N+   EA +L+ +M   GV+ + +T   LL    D   L   +  H  
Sbjct: 109 VSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSH 168

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++FG      V N L+  Y K   +D   +LF ++P K  +++N MI+GY + G     
Sbjct: 169 IIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEA 228

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSV--GLEVEQQIQANGFGSNPFLNNALI 190
           L+L+ +M+++   P   TF  +L     +G+  V  G ++        +  + F+ NAL+
Sbjct: 229 LKLFMQMRNMDFQPSGFTFAAMLG--MSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALL 286

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           + Y++   +  A+ +FD MP    VS+  II GY  +G  E +  LF  +  +       
Sbjct: 287 DFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNF 346

Query: 251 AFVSVLSACS 260
            F ++LS  +
Sbjct: 347 PFATMLSVAA 356



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 87/171 (50%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N +++ YVK  ++   R+LF+ +  +  ++W  MI GY+QN        LY EM   GV 
Sbjct: 81  NMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVK 140

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           PD +TF  +LS           L++   I   GF ++  + N+L++ Y +   L  A  +
Sbjct: 141 PDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQL 200

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL 256
           F  MP K  VS+  +I GY  +G  E A++LF +M     +P G  F ++L
Sbjct: 201 FSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAML 251



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 4/83 (4%)

Query: 179 FGSNPFLNNALINM----YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
           F   P+ N + +NM    Y +  NL +AR +F+ M  +  VSWT +IGGY  +   + A 
Sbjct: 69  FDEMPYRNTSSVNMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAF 128

Query: 235 QLFDEMLKSGIRPDGTAFVSVLS 257
            L+ EM +SG++PD   F ++LS
Sbjct: 129 NLYTEMCRSGVKPDHITFATLLS 151


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/509 (39%), Positives = 295/509 (57%), Gaps = 38/509 (7%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +N++++GY  N    +A+ +  +M     + ++ TM  LLP   +            
Sbjct: 199 VVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTN------------ 246

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                                    +V Y  ++F  + +K L++WN MIS Y +N +   
Sbjct: 247 ---------------------TSSENVLYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGK 285

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            ++LY +M    V PDA+T   VL +C  L A  +G  + + ++      N  L N+LI+
Sbjct: 286 SVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLID 345

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYARCG L+ A+ +FD M  + V SWT++I  YG+ G G  AV LF EM  SG  PD  A
Sbjct: 346 MYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIA 405

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           FV++LSACSH+GL ++G  YF  M + Y + P  EH+ C+VDLLGR+G+++EA  +I+ M
Sbjct: 406 FVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQM 465

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            ++P+  VWGALL +C+++ N+++  LA  K+++L P  +GYYVLLSNIY++A     + 
Sbjct: 466 PMKPNERVWGALLSSCRVYSNMDIGILAADKLLQLAPEESGYYVLLSNIYAKAGRWTEVT 525

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
            +R +M+ RR++K PG S VEL  +VH F+ GD  H Q+ EIY  L  L   ++E     
Sbjct: 526 AIRSLMKRRRIRKMPGISNVELNNQVHTFLAGDTYHPQSKEIYEELSVLVGKMKELGYVP 585

Query: 432 RSDQKNSEEHLNDTE----VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           ++D    +    D E    VHSEKLAI F I+NT   + I + KNLR+CGDCH+  KL+S
Sbjct: 586 KTDSALHDVEEEDKECHLAVHSEKLAIVFAILNTQE-SPIRITKNLRVCGDCHIAAKLIS 644

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KIV R+ ++RD  RFHHFK G CSC DYW
Sbjct: 645 KIVQREIVIRDTNRFHHFKDGICSCGDYW 673



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 129/272 (47%), Gaps = 22/272 (8%)

Query: 83  SVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL 142
           S+G  LM  Y   G     R +FD +PE+ +I +N MI  Y  N L    L ++R+M S 
Sbjct: 68  SLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSG 127

Query: 143 GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202
           G  PD  T+  VL +C+      +GL++   +   G   N F+ N LI +Y +CG L +A
Sbjct: 128 GFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEA 187

Query: 203 RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262
           R + D M  K VVSW +++ GY  +   + A+ +  EM     +PD     S+L A ++ 
Sbjct: 188 RCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNT 247

Query: 263 GLTDKGL---EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM---LVEPD 316
             ++  L   E F  ++ K  +      +  M+ +  +     ++++L   M    VEPD
Sbjct: 248 S-SENVLYVEEMFMNLEKKSLVS-----WNVMISVYMKNSMPGKSVDLYLQMGKCEVEPD 301

Query: 317 GAVWGALLGAC----------KIHKNVELAEL 338
                ++L AC          +IH+ VE  +L
Sbjct: 302 AITCASVLRACGDLSALLLGRRIHEYVERKKL 333



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 2/148 (1%)

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
            F  NP L   L+  YA  G    AR +FD +P + V+ +  +I  Y  +   + A+ +F
Sbjct: 62  SFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVF 121

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
            +M+  G  PD   +  VL ACS +     GL+  +G   K GL         ++ L G+
Sbjct: 122 RDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQ-LHGAVFKVGLDLNLFVGNGLIALYGK 180

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLG 325
            G L EA  +++ M  + D   W +++ 
Sbjct: 181 CGCLPEARCVLDEMQSK-DVVSWNSMVA 207


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/510 (39%), Positives = 302/510 (59%), Gaps = 46/510 (9%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N +I+GY +   + EA  LF +M E+    N V+              W        
Sbjct: 293 ISWNTMINGYAIVGKIDEAKRLFDEMPER----NLVS--------------W-------- 326

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
                        N ++  +VKCG+V+    LF ++P + +++WN+M++ YAQ G     
Sbjct: 327 -------------NSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEA 373

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+ +M+++GV P   T V +LS+CAHLGA   GL +   I  N    N  +  AL++M
Sbjct: 374 LALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDM 433

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG +  A  +F+ M  K V++W  II G  IHG+ + A QLF EM ++G+ P+   F
Sbjct: 434 YAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITF 493

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           V++LSACSHAG+ D+G +    M + YG++P  EHY C++DLL RAG L EA+ELI +M 
Sbjct: 494 VAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMP 553

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           +EP+ +  GALLG C+IH N EL E+   ++I L+P ++G Y+LLSNIY+ A+  D   +
Sbjct: 554 MEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARK 613

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR +M+   + K PG S +ELKG VH F+ GD +H ++ +IY  L+++   ++   G   
Sbjct: 614 VRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYS- 672

Query: 433 SDQKN------SEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
           +D  N       E+  +   VHSEKLAIA+G+++      I ++KNLR+C DCH  IKL+
Sbjct: 673 ADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLI 732

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SK+  R+ IVRD  RFHHF+ G CSC D+W
Sbjct: 733 SKVYGREIIVRDRNRFHHFEDGECSCLDFW 762



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 172/346 (49%), Gaps = 12/346 (3%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           YN+LI     +    EA+ L+  M + G++ + +T   ++  C +    W G+  H   V
Sbjct: 163 YNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVV 222

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K G + D  + + L+ +Y     +   ++LF+    + +++WNAMI GY ++    H   
Sbjct: 223 KSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARM 282

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           ++  M    VC D +++  +++  A +G       +  ++      S     N+++  + 
Sbjct: 283 VFDRM----VCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVS----WNSMLAGFV 334

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CGN++ A  +F  MP + VVSW +++  Y   G    A+ LFD+M   G++P     VS
Sbjct: 335 KCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVS 394

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           +LSAC+H G  DKGL + +   N   ++      T +VD+  + G+++ A ++  +M  +
Sbjct: 395 LLSACAHLGALDKGL-HLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESK 453

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
            D   W  ++    IH NV+ A+  F ++ +  +EP +  +  +LS
Sbjct: 454 -DVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILS 498



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 109/262 (41%), Gaps = 43/262 (16%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           Y + +F  +       +N++I   + +      L LY  M   G+ PD +T+  V+ +C 
Sbjct: 147 YAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACN 206

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
                  GL V   +  +GF  + ++ ++LI++YA   +L  A+ +F+    + VVSW A
Sbjct: 207 ESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNA 266

Query: 220 IIGGYGIH---GHGEV----------------------------AVQLFDEMLKSGIRPD 248
           +I GY  H   GH  +                            A +LFDEM +  +   
Sbjct: 267 MIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNL--- 323

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
             ++ S+L+     G  +     F  M  +  +      +  M+    + G+ NEAL L 
Sbjct: 324 -VSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVS-----WNSMLACYAQCGKPNEALALF 377

Query: 309 ESML---VEPDGAVWGALLGAC 327
           + M    V+P  A   +LL AC
Sbjct: 378 DQMRAVGVKPTEATVVSLLSAC 399


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/523 (37%), Positives = 302/523 (57%), Gaps = 12/523 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +  +  V YN +I+ Y  N   +  + LF +M++ G +   +    +L +    
Sbjct: 293 LFDEMPERDN--VSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSL 350

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             + +G   H   V  GL  +  +GN L+ MY KCG +D  +  F    EK  I+W A+I
Sbjct: 351 PDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALI 410

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GY QNG     L+L+ +M+  G+ PD  TF  ++ + + L    +G ++   +  +G+ 
Sbjct: 411 TGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYK 470

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S+ F  + L++MYA+CG L +A   FD MP +  +SW A+I  Y  +G  + A+++F+ M
Sbjct: 471 SSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGM 530

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           L  G  PD   F+SVL+ACSH GL D+ ++YF+ MK++Y + P  EHY C++D LGR G 
Sbjct: 531 LHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGC 590

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
            ++  +++  M  + D  +W ++L +C+IH N ELA +A  K+  +EP +   YV+LSNI
Sbjct: 591 FSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNI 650

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+ A   +    V+ +MR+R ++K+ GYS+VE+K +++ F   D       EI    D+L
Sbjct: 651 YARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIK---DEL 707

Query: 421 ENLVQEHDGTKRSDQKNSEEHLNDTEV-------HSEKLAIAFGIINTSPGTEIVVMKNL 473
           + L +E D            H+ D E+       HSE+LAIAF ++NT  GT I +MKNL
Sbjct: 708 DRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNL 767

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
             C DCH  IK++SKIV+R  IVRD+ RFHHFK G CSC DYW
Sbjct: 768 TACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 810



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 102/315 (32%), Positives = 165/315 (52%), Gaps = 2/315 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V YNA++ G     L ++A+ LF  MR  G+     T   +L +     +L LG   H 
Sbjct: 201 AVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHA 260

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + ++    L+  V N L+  Y KC  +D  R+LFD++PE+  +++N +I+ YA N  A  
Sbjct: 261 LVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAAT 320

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
           VL L+REM+ LG     + +  +LS    L    +G ++  Q+   G  S   L NALI+
Sbjct: 321 VLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALID 380

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY++CG L  A++ F     K+ +SWTA+I GY  +G  E A+QLF +M ++G+RPD   
Sbjct: 381 MYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRAT 440

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F S++ A S   +   G +  +    + G +      + +VD+  + G L+EAL   + M
Sbjct: 441 FSSIIKASSSLAMIGLGRQ-LHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEM 499

Query: 312 LVEPDGAVWGALLGA 326
             E +   W A++ A
Sbjct: 500 -PERNSISWNAVISA 513



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 179/415 (43%), Gaps = 69/415 (16%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLL--PICVDPGYLWLGMCCHCI 72
           +  ++  +      S+A+SLF  M  +GV  + VT+  +L  P C  P         H  
Sbjct: 108 WTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSL-------HPF 160

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +KFGLD    V N L+  Y K G +   R++F ++ +K  +T+NAM+ G ++ GL T  
Sbjct: 161 AIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQA 220

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+L+  M+  G+     TF  +L+  A +    +G +V   +  +    N F+NN+L++ 
Sbjct: 221 LQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDF 280

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK---------- 242
           Y++C  L   R +FD MP +  VS+  II  Y  +      ++LF EM K          
Sbjct: 281 YSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPY 340

Query: 243 ------SGIRPD----------------------GTAFVSVLSACSHAGLTDKGLEYFYG 274
                 +G  PD                      G A + + S C   G+ D     F  
Sbjct: 341 ATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKC---GMLDAAKSNFSN 397

Query: 275 MKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGACKIHK 331
              K  +      +T ++    + GQ  EAL+L   M    + PD A + +++ A     
Sbjct: 398 RSEKSAIS-----WTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKA----- 447

Query: 332 NVELAELAFGKVIKLEPMNTGYY------VLLSNIYSEARNLDGIMRVRMMMRER 380
           +  LA +  G+ +    + +GY        +L ++Y++   LD  +R    M ER
Sbjct: 448 SSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPER 502



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 9/177 (5%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N +++ Y   G +   + LF   P +   TW  M+  +A  G  +  L L+R M   GV 
Sbjct: 78  NLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVI 137

Query: 146 PDAVTFVGVLS--SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
           PD VT   VL+   C     H   ++        G  ++ F+ N L++ Y + G L  AR
Sbjct: 138 PDRVTVTTVLNLPGCTVPSLHPFAIKF-------GLDTHVFVCNTLLDAYCKHGLLAAAR 190

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
            +F  M  K  V++ A++ G    G    A+QLF  M ++GI      F S+L+  +
Sbjct: 191 RVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAA 247



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 7/146 (4%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           N F  N +++ Y+  G+L  A+ +F   P +   +WT ++  +   G    A+ LF  ML
Sbjct: 73  NIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAML 132

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301
             G+ PD     +VL+     G T   L  F     K+GL         ++D   + G L
Sbjct: 133 GEGVIPDRVTVTTVLNL---PGCTVPSLHPF---AIKFGLDTHVFVCNTLLDAYCKHGLL 186

Query: 302 NEALELIESMLVEPDGAVWGALLGAC 327
             A  +   M  + D   + A++  C
Sbjct: 187 AAARRVFLEMH-DKDAVTYNAMMMGC 211



 Score = 45.1 bits (105), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 5/100 (5%)

Query: 197 GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL 256
           G+L +ARA+FD MP K + S   I+  Y   G    A  LF   L S  R + T +  ++
Sbjct: 57  GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLF---LSSPHR-NATTWTIMM 112

Query: 257 SACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
            A + AG T   L  F  M  + G+ P     T +++L G
Sbjct: 113 RAHAAAGRTSDALSLFRAMLGE-GVIPDRVTVTTVLNLPG 151


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/521 (39%), Positives = 316/521 (60%), Gaps = 8/521 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+ I    ++  +  +I+ Y  N+  +EA+ L  K++ +G++++++ +   L  C   
Sbjct: 270 VFDKMINKDLIS--WTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGL 327

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L      H   +K GL  D  + N ++ +Y  CG+++Y  ++F+ +  K +++W +MI
Sbjct: 328 RCLSHAKEVHGYTLKRGLS-DLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMI 386

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           S Y  NGLA   L ++  MK   V PD++T V +LS+ A L A + G E+   I   GF 
Sbjct: 387 SCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFM 446

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
                 N+L++MYA CG+L+ A  +F     K++V WT +I  YG+HG G+ AV+LF  M
Sbjct: 447 LEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIM 506

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
               + PD   F+++L ACSH+GL ++G      MK KY L+P PEHY C+VDLLGRA  
Sbjct: 507 EDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANH 566

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L EA   ++SM +EP   VW A LGAC+IH N +L E+A  K++ L+P + G YVL+SN+
Sbjct: 567 LEEAYHFVKSMQIEPTAEVWCAFLGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNV 626

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           ++ +     +  VRM M+   LKK+PG S++E+  +VH F+V D++H ++ +IY+ L ++
Sbjct: 627 FAASGRWKDVEEVRMRMKGGGLKKNPGCSWIEVGNKVHTFLVRDKSHPESYKIYQKLAQI 686

Query: 421 ENLVQEHDGTKRSDQ-----KNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRI 475
              +++  G     +        EE +     HSE+LAIA+G+++TS GT I + KNLR+
Sbjct: 687 TEKLEKEGGYVPQTKLVLHNVGKEEKVQMLYGHSERLAIAYGLMSTSEGTPIRITKNLRV 746

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           C DCH F KLVSK  +R+ IVRDA+RFHHF+ G CSC D+W
Sbjct: 747 CVDCHTFCKLVSKFFERELIVRDASRFHHFEDGVCSCGDFW 787



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 168/339 (49%), Gaps = 7/339 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++IS Y LN    EA+ LF +M++ GV  N+ T++  L  C D  +  LGM  H  
Sbjct: 78  VSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEIHAA 137

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K    LD  V N L+ M+V+ G + Y  ++FD++ EK  ITWN+MI+G+ QNGL    
Sbjct: 138 ILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEA 197

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+ +  ++   + PD V+ + +L++   LG    G E+      N   SN  + N LI+M
Sbjct: 198 LQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDM 257

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++C  +  A  +FD M  K ++SWT +I  Y  +     A++L  ++   G+  D    
Sbjct: 258 YSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMI 317

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S L ACS         E  +G   K GL         ++D+    G +N A  + ES+ 
Sbjct: 318 GSTLLACSGLRCLSHAKE-VHGYTLKRGLSDLMMQ-NMIIDVYADCGNINYATRMFESIK 375

Query: 313 VEPDGAVWGALLGACKIHK---NVELAELAFGKVIKLEP 348
            + D   W +++ +C +H    N  L      K   +EP
Sbjct: 376 CK-DVVSWTSMI-SCYVHNGLANEALGVFYLMKETSVEP 412



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 126/242 (52%), Gaps = 2/242 (0%)

Query: 38  MREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS 97
           MR  GV  +S T  C+L  C     +  G   H + +K G D    V N L++MY KC  
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 98  VDYGRKLFDQVPEKG-LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS 156
           +   RKLFD++ E+  +++WN++IS Y+ NG     L L+REM+  GV  +  T V  L 
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS 216
           +C       +G+E+   I  +    + ++ NAL+ M+ R G +  A  IFD +  K  ++
Sbjct: 121 ACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNIT 180

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGM 275
           W ++I G+  +G    A+Q F  +  + ++PD  + +S+L+A    G    G E + Y M
Sbjct: 181 WNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAM 240

Query: 276 KN 277
           KN
Sbjct: 241 KN 242


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/520 (40%), Positives = 309/520 (59%), Gaps = 6/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE       T  +NA+++G     +  EA+ LF +M E     +  ++  +L  C   
Sbjct: 157 LFDEMPDRNVAT--WNAMVTGLTKFEMNEEALLLFSRMNELSFMPDEYSLGSVLRGCAHL 214

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  G   H   +K G + +  VG  L  MY+K GS+  G ++ + +P+  L+ WN ++
Sbjct: 215 GALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHDGERVINWMPDCSLVAWNTLM 274

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SG AQ G    VL+ Y  MK  G  PD +TFV V+SSC+ L     G ++  +    G  
Sbjct: 275 SGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISSCSELAILCQGKQIHAEAVKAGAS 334

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S   + ++L++MY+RCG L+ +   F     + VV W+++I  YG HG GE A++LF+EM
Sbjct: 335 SEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLWSSMIAAYGFHGQGEEAIKLFNEM 394

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            +  +  +   F+S+L ACSH GL DKGL  F  M  KYGL+   +HYTC+VDLLGR+G 
Sbjct: 395 EQENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMVKKYGLKARLQHYTCLVDLLGRSGC 454

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L EA  +I SM V+ D  +W  LL ACKIHKN E+A     +V++++P ++  YVLL+NI
Sbjct: 455 LEEAEAMIRSMPVKADAIIWKTLLSACKIHKNAEIARRVADEVLRIDPQDSASYVLLANI 514

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           YS A     +  VR  M+++ +KK+PG S+VE+K +VH F +GD  H + VEI + L++L
Sbjct: 515 YSSANRWQNVSEVRRAMKDKMVKKEPGISWVEVKNQVHQFHMGDECHPKHVEINQYLEEL 574

Query: 421 ENLVQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
            + ++      D +      ++EE       HSEKLAIAF ++NT  G  I VMKNLR+C
Sbjct: 575 TSEIKRQGYVPDTSSVLHDMDNEEKEQILRHHSEKLAIAFALMNTPEGVPIRVMKNLRVC 634

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DCH+ IK +S+I   + IVRD++RFHHFK+G CSC DYW
Sbjct: 635 SDCHVAIKYISEIKKLEIIVRDSSRFHHFKNGTCSCGDYW 674



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 134/277 (48%), Gaps = 3/277 (1%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N ++  Y+  G+++  + LFD++P++ + TWNAM++G  +  +    L L+  M  L   
Sbjct: 139 NIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSRMNELSFM 198

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           PD  +   VL  CAHLGA   G +V   +   GF  N  +  +L +MY + G++     +
Sbjct: 199 PDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHDGERV 258

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
            + MP  ++V+W  ++ G    G+ E  +  +  M  +G RPD   FVSV+S+CS   + 
Sbjct: 259 INWMPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISSCSELAIL 318

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
            +G +  +    K G        + +V +  R G L ++++       E D  +W +++ 
Sbjct: 319 CQG-KQIHAEAVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLE-CKERDVVLWSSMIA 376

Query: 326 ACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362
           A   H   E A   F + ++ E +       LS +Y+
Sbjct: 377 AYGFHGQGEEAIKLFNE-MEQENLPGNEITFLSLLYA 412



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 62/110 (56%), Gaps = 1/110 (0%)

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
           H+ E +    S  +  +   F  +L +C  L + S+G ++   I  +G  S+ F++N L+
Sbjct: 53  HIREAFESFLS-EIWAEPRLFSNLLQACIPLKSVSLGKQLHSLIFTSGCSSDKFISNHLL 111

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           N+Y++ G L+ A A+FD MPR+ ++S   +I  Y   G+ E A  LFDEM
Sbjct: 112 NLYSKFGELQAAVALFDRMPRRNIMSCNIMIKAYLGMGNLESAKNLFDEM 161


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/551 (36%), Positives = 309/551 (56%), Gaps = 37/551 (6%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE   S    V YN ++S YV + L  E + +  +M ++G   + VTML  +  C   
Sbjct: 280 IFDEF--SDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQL 337

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFD-------------- 106
           G L +G   H    + GL+   ++ N ++ MY+KCG  +   K+FD              
Sbjct: 338 GDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLI 397

Query: 107 -----------------QVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
                            ++PE  L++WN MI    Q  +    ++L REM++ G+  D V
Sbjct: 398 AGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRV 457

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
           T VG+ S+C +LGA  +   +   I+ N    +  L  AL++M++RCG+   A  +F+ M
Sbjct: 458 TMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENM 517

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
            ++ V +WTA I    + G+ + A++LFDEMLK  ++ D   FV++L+A SH G  D+G 
Sbjct: 518 EKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGR 577

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
           + F+ M+  +G+ P   HY CMVDLLGRAG L EA +L++SM ++P+  +WG+ L AC+ 
Sbjct: 578 QLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAACRK 637

Query: 330 HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYS 389
           HKNVE A  A  K+ +L P   G +VLLSNIY+ A   + + RVR+ M+E+  +K  G S
Sbjct: 638 HKNVEFANYADEKITQLAPEKVGIHVLLSNIYASAGKWNDVARVRLQMKEKGFQKVAGSS 697

Query: 390 YVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----HDGTKRSDQKNSEEHLNDT 445
            +E+ G +  F  GD +H +  +I  ML ++   + +     D T      + +E  +  
Sbjct: 698 SIEVHGLIREFTSGDESHTENAQIGLMLQEINCRISQVGYVPDTTNVLVDVDEQEKEHLL 757

Query: 446 EVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHF 505
             HSEKLA+A+G+INT  G  I V+KNLR+C DCH F KLVSK+  R+  VRD  R+H F
Sbjct: 758 SRHSEKLAMAYGLINTGKGIPIRVVKNLRMCSDCHSFAKLVSKLYGREITVRDNNRYHFF 817

Query: 506 KSGFCSCKDYW 516
           K GFCSC+D+W
Sbjct: 818 KEGFCSCRDFW 828



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/376 (31%), Positives = 186/376 (49%), Gaps = 35/376 (9%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE ++     V + +LI+GY + ++  EAV LF +M E GVE N VTM+C +  C   
Sbjct: 179 VFDEMLERN--VVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKL 236

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L LG     +  + G+  +  V N L+ MY+KCG +   R++FD+  +K L+ +N ++
Sbjct: 237 KDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIM 296

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           S Y Q+GLA  VL +  EM   G  PD VT +  +++CA LG  SVG      +  NG  
Sbjct: 297 SNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLE 356

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
               ++NA+I+MY +CG  + A  +FD M  KTVV+W ++I G    G  E+A+++F EM
Sbjct: 357 RLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEM 416

Query: 241 LKS-------------------------------GIRPDGTAFVSVLSACSHAGLTDKGL 269
            +S                               GI+ D    V + SAC + G  D   
Sbjct: 417 PESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLA- 475

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
           ++ Y    K  +    +  T +VD+  R G    A+ + E+M  + D + W A +    +
Sbjct: 476 KWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENM-EKRDVSAWTAAIRVKAV 534

Query: 330 HKNVELAELAFGKVIK 345
             N + A   F +++K
Sbjct: 535 EGNAKGAIELFDEMLK 550



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 114/344 (33%), Positives = 177/344 (51%), Gaps = 9/344 (2%)

Query: 3   DESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVDPG 61
           DE  K + L  C N LI GY  + L  EA+ ++  M    G+  ++ T   LL  C    
Sbjct: 79  DEGTKCS-LYTC-NTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIM 136

Query: 62  YLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMIS 121
               G+  H + VK GL  D  V N L+  Y  CG VD GRK+FD++ E+ +++W ++I+
Sbjct: 137 AFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLIN 196

Query: 122 GYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGS 181
           GY+   +A   + L+ EM  +GV P+ VT V  +S+CA L    +G +V   +   G  S
Sbjct: 197 GYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKS 256

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG-HGEVAVQLFDEM 240
           N  + NAL++MY +CG++   R IFD    K +V +  I+  Y  HG  GEV V L DEM
Sbjct: 257 NTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVL-DEM 315

Query: 241 LKSGIRPDGTAFVSVLSACSHAG-LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           L+ G RPD    +S ++AC+  G L+     + Y  +N  GL+        ++D+  + G
Sbjct: 316 LQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRN--GLERLDNISNAIIDMYMKCG 373

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
           +   A ++ +SM        W +L+        +ELA   FG++
Sbjct: 374 KREAACKVFDSM-SNKTVVTWNSLIAGLVRDGELELALRIFGEM 416


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/520 (38%), Positives = 306/520 (58%), Gaps = 6/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE + S  L V +N +I     N   +EA+ L  +M+ +G   +  T+  +L  C   
Sbjct: 121 VFDE-MPSRSL-VSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAK 178

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L      H   +K  +DL+  V   L+ +Y KCG +     +F+ +P++ ++TW++M 
Sbjct: 179 CALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMA 238

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GY QN +    L L+R+    G+  D      V+ +CA L A   G ++   +  +GF 
Sbjct: 239 AGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFC 298

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           SN F+ ++LI+MYA+CG ++++  +F  + ++ VV W A+I G   H      + LF++M
Sbjct: 299 SNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKM 358

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            + G+ P+   FVSVLSAC H GL  KG +YF  M  ++ L P   HY+CMVD L RAGQ
Sbjct: 359 QQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQ 418

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           + EA +LI  +      ++WG+LL +C+ H N+ELAE+A  K+  +EP N+G Y+LLSN+
Sbjct: 419 IFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNM 478

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+     D + ++R +++E  +KK+ G S++E+K +VHLFMVG+RNH + VEIY  L+++
Sbjct: 479 YAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEV 538

Query: 421 ENLVQE--HDGTKRSDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
            + +Q+  +    + D     E +    +  HSEKLA   G++   P   I +MKNLRIC
Sbjct: 539 MDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRIC 598

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           GDCH F+KL SK   R  IVRD  RFHHFK+G CSC D+W
Sbjct: 599 GDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 149/309 (48%), Gaps = 6/309 (1%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           +L +C     L  G  CH   +  GL  D    N L+ MY KCGSVD+ R++FD++P + 
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
           L++WN MI    QNG     L+L  +M+  G      T   VL +CA   A S    +  
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHA 189

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
                    N F+  AL+++YA+CG +K A  +F+ MP ++VV+W+++  GY  +   E 
Sbjct: 190 FAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQ 249

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
           A+ LF +  ++G++ D     SV+ AC+      +G +    + +K G        + ++
Sbjct: 250 ALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEG-KQMNALLSKSGFCSNIFVASSLI 308

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAV-WGALLGACKIHKNVELAELAFGKV--IKLEPM 349
           D+  + G + E+ ++     VE    V W A++     H       + F K+  + L P 
Sbjct: 309 DMYAKCGGIEESYKVFRD--VEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPN 366

Query: 350 NTGYYVLLS 358
           +  +  +LS
Sbjct: 367 DVTFVSVLS 375


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/540 (36%), Positives = 311/540 (57%), Gaps = 43/540 (7%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           + A I+   +N L  +A  L+ ++    +  N  T   LL  C        G   H   +
Sbjct: 98  FTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKS----GKLIHTHVL 153

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT------------------- 115
           KFGL +D  V   L+ +Y K G V   +K+FD++PE+ L++                   
Sbjct: 154 KFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARA 213

Query: 116 ------------WNAMISGYAQNGLATHVLELYREMKSLGVC-PDAVTFVGVLSSCAHLG 162
                       WN MI GYAQ+G     L L++++ + G   PD +T V  LS+C+ +G
Sbjct: 214 LFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIG 273

Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIG 222
           A   G  +   ++++    N  +   LI+MY++CG+L++A  +F+  PRK +V+W A+I 
Sbjct: 274 ALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIA 333

Query: 223 GYGIHGHGEVAVQLFDEMLK-SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281
           GY +HG+ + A++LF+EM   +G++P    F+  L AC+HAGL ++G+  F  M  +YG+
Sbjct: 334 GYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGI 393

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG 341
           +P  EHY C+V LLGRAGQL  A E I++M ++ D  +W ++LG+CK+H +  L +    
Sbjct: 394 KPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAE 453

Query: 342 KVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFM 401
            +I L   N+G YVLLSNIY+   + +G+ +VR +M+E+ + K+PG S +E++ +VH F 
Sbjct: 454 YLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFR 513

Query: 402 VGDRNHHQTVEIYRMLDKLENLVQEH-----DGTKRSDQKNSEEHLNDTEVHSEKLAIAF 456
            GDR H ++ EIY ML K+   ++ H       T   D + +E+     +VHSE+LAIA+
Sbjct: 514 AGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKE-QSLQVHSERLAIAY 572

Query: 457 GIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           G+I+T PG+ + + KNLR+C DCH   KL+SKI  R+ ++RD  RFHHF  G CSC D+W
Sbjct: 573 GLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 125/242 (51%), Gaps = 6/242 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +N +I GY  +   ++A+ LF K+  +G  + + +T++  L  C   G L  G   H 
Sbjct: 224 VSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHV 283

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                 + L+  V   L+ MY KCGS++    +F+  P K ++ WNAMI+GYA +G +  
Sbjct: 284 FVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQD 343

Query: 132 VLELYREMKSL-GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--A 188
            L L+ EM+ + G+ P  +TF+G L +CAH G  + G+ + + +    +G  P + +   
Sbjct: 344 ALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESM-GQEYGIKPKIEHYGC 402

Query: 189 LINMYARCGNLKKARAIFDGMPRKT-VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           L+++  R G LK+A      M      V W++++G   +HG   +  ++ + ++   I+ 
Sbjct: 403 LVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKN 462

Query: 248 DG 249
            G
Sbjct: 463 SG 464



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 118/275 (42%), Gaps = 38/275 (13%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L   Y   G + +   LF Q  +  L  + A I+  + NGL      LY ++ S  + P+
Sbjct: 70  LHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPN 129

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
             TF  +L SC+       G  +   +   G G +P++   L+++YA+ G++  A+ +FD
Sbjct: 130 EFTFSSLLKSCST----KSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFD 185

Query: 208 GMPRKT-------------------------------VVSWTAIIGGYGIHGHGEVAVQL 236
            MP ++                               +VSW  +I GY  HG    A+ L
Sbjct: 186 RMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALML 245

Query: 237 FDEMLKSG-IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295
           F ++L  G  +PD    V+ LSACS  G  + G  + +       ++   +  T ++D+ 
Sbjct: 246 FQKLLAEGKPKPDEITVVAALSACSQIGALETG-RWIHVFVKSSRIRLNVKVCTGLIDMY 304

Query: 296 GRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
            + G L EA+ L+ +     D   W A++    +H
Sbjct: 305 SKCGSLEEAV-LVFNDTPRKDIVAWNAMIAGYAMH 338



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 12/205 (5%)

Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
           P LN  L   YA  G ++ + A+F       +  +TA I    I+G  + A  L+ ++L 
Sbjct: 64  PVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLS 123

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
           S I P+   F S+L +CS      K  +  +    K+GL   P   T +VD+  + G + 
Sbjct: 124 SEINPNEFTFSSLLKSCS-----TKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVV 178

Query: 303 EALELIESMLVEPDGAVWG--ALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
            A ++ + M   P+ ++    A++       NVE A   F  + + + ++  + V++   
Sbjct: 179 SAQKVFDRM---PERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVS--WNVMIDGY 233

Query: 361 YSEARNLDGIMRVRMMMRERRLKKD 385
                  D +M  + ++ E + K D
Sbjct: 234 AQHGFPNDALMLFQKLLAEGKPKPD 258


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/493 (40%), Positives = 285/493 (57%), Gaps = 39/493 (7%)

Query: 63  LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFD---------------- 106
           +W+G C H + ++ GL  D  V   L+ +Y KCG ++   K+FD                
Sbjct: 150 VWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAG 209

Query: 107 ---------------QVPEKGLITWNAMISGYAQNGLATHVLELYREM--KSLGVCPDAV 149
                          ++P + +++W  MISGY+Q+GLA   L L+ EM  +  GV P+ V
Sbjct: 210 YTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWV 269

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
           T + VL +CA L     G ++ +     G  SN  +  AL  MYA+CG+L  AR  FD +
Sbjct: 270 TIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKL 329

Query: 210 PR--KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            R  K +++W  +I  Y  +GHG  AV  F EM+++GI+PD   F  +LS CSH+GL D 
Sbjct: 330 NRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDV 389

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           GL+YF  M   Y + P  EHY C+ DLLGRAG+L EA +L+  M +    ++WG+LL AC
Sbjct: 390 GLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAAC 449

Query: 328 KIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPG 387
           + H+N+E+AE A  K+  LEP NTG YVLLSN+Y+EA     + ++R +++ +  KK PG
Sbjct: 450 RKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPG 509

Query: 388 YSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----HDGTKRSDQKNSEEHLN 443
            S++E+ G+ H+F+ GD +H Q  EIY  L+ L   ++      D +      + EE   
Sbjct: 510 CSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEF 569

Query: 444 DTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFH 503
           +   HSEKLA+AFGI+NT   T + V KNLRICGDCH  +  +S+I  R+ IVRD  RFH
Sbjct: 570 NLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFH 629

Query: 504 HFKSGFCSCKDYW 516
           HFK G CSC DYW
Sbjct: 630 HFKGGCCSCGDYW 642



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 116/228 (50%), Gaps = 8/228 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKM--REQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
           V +  +ISGY  + L  +A+SLF +M   + GV  N VT++ +LP C     L  G   H
Sbjct: 232 VSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIH 291

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV--PEKGLITWNAMISGYAQNGL 128
            +  + GL+ + SV   L  MY KCGS+   R  FD++   EK LI WN MI+ YA  G 
Sbjct: 292 ELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGH 351

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN- 187
               +  +REM   G+ PD +TF G+LS C+H G   VGL+    +    +  NP + + 
Sbjct: 352 GLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTT-YSINPRVEHY 410

Query: 188 -ALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVA 233
             + ++  R G L +A  +   MP     S W +++     H + E+A
Sbjct: 411 ACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMA 458



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 103/248 (41%), Gaps = 37/248 (14%)

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF 206
           D  TF  VL S   L +  +G  V   I   G   + ++  +LI +Y +CG +  A  +F
Sbjct: 133 DYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVF 192

Query: 207 DGMPRKTVVSWTAI-------------------------------IGGYGIHGHGEVAVQ 235
           D M  + V SW A+                               I GY   G  + A+ 
Sbjct: 193 DNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALS 252

Query: 236 LFDEMLK--SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293
           LFDEM+K  SG+RP+    +SVL AC+     ++G +  + +  + GL         +  
Sbjct: 253 LFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQ-IHELACRMGLNSNASVLIALTA 311

Query: 294 LLGRAGQLNEALELIESM-LVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMN 350
           +  + G L +A    + +   E +   W  ++ A   + +   A   F ++I+  ++P +
Sbjct: 312 MYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDD 371

Query: 351 TGYYVLLS 358
             +  LLS
Sbjct: 372 ITFTGLLS 379


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/509 (37%), Positives = 299/509 (58%), Gaps = 4/509 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V + ++I+GYV +    EA+  F  M+  G+  +++ +   +  C     +  G   H 
Sbjct: 411 VVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHS 470

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                G   D S+ N L+ +Y +CG       LF+ +  K  ITWN M+SG+AQ+GL   
Sbjct: 471 RVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEE 530

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            LE++ +M   GV  +  TFV  +S+ A+L     G ++   +   G  S   + NALI+
Sbjct: 531 ALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALIS 590

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +Y +CG+++ A+  F  M  +  VSW  II     HG G  A+ LFD+M + G++P+   
Sbjct: 591 LYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVT 650

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+ VL+ACSH GL ++GL YF  M +++G+ P P+HY C+VD+LGRAGQL+ A + +E M
Sbjct: 651 FIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEM 710

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            V  +  VW  LL AC++HKN+E+ ELA   +++LEP ++  YVLLSN Y+         
Sbjct: 711 PVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRD 770

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
            VR MM++R ++K+PG S++E+K  VH F VGDR H    +IY+ L  L++ + +    +
Sbjct: 771 HVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYLADLDDRLAKIGYIQ 830

Query: 432 RS----DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
            +     +K  E+      VHSEKLA+AFG+++  P   + V+KNLR+C DCH ++K  S
Sbjct: 831 GNYFLFHEKEKEQKDPTAFVHSEKLAVAFGLMSLPPSMPLRVIKNLRVCNDCHTWMKFTS 890

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +++ R+ ++RD  RFHHF +G CSC D+W
Sbjct: 891 EVMGREIVLRDVYRFHHFNNGNCSCGDFW 919



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 169/320 (52%), Gaps = 4/320 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +N ++  Y   S ++++  LF +M   GV  N  T  CLL  C   G + LG   H 
Sbjct: 310 VVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHL 369

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + +K G + D  V   L+ MY K G +D  R++ + +  K +++W +MI+GY Q+     
Sbjct: 370 LSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKE 429

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            LE +++M+  G+ PD +     +S+CA + A   G ++  ++  +G+ ++  + NAL+N
Sbjct: 430 ALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVN 489

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +YARCG  K+A ++F+ +  K  ++W  ++ G+   G  E A+++F +M ++G++ +   
Sbjct: 490 LYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFT 549

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA-LELIES 310
           FVS +SA ++     +G +  +    K G     E    ++ L G+ G + +A ++  E 
Sbjct: 550 FVSSISASANLADIKQGKQ-IHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFE- 607

Query: 311 MLVEPDGAVWGALLGACKIH 330
            + E +   W  ++ +C  H
Sbjct: 608 -MSERNHVSWNTIITSCSQH 626



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 95/296 (32%), Positives = 145/296 (48%), Gaps = 2/296 (0%)

Query: 16  NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLW-LGMCCHCICV 74
           N  ++G++ +    + +SLF     Q   + SV   C L  C      W L    H   +
Sbjct: 10  NKSLTGFLAHEDPEKLLSLFAAKVRQCRGLGSVDFACALRECRGSVKHWPLVPVIHAKAI 69

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             GL  D   GN L+ +Y K G V   R++F+Q+  +  ++W AM+SGYA+NGL    + 
Sbjct: 70  TCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVG 129

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           LY +M   GV P       VLS+C        G  V  Q+   G  S   + NALI +Y 
Sbjct: 130 LYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYL 189

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           R G+L  A  +F  MP    V++  +I  +   G+GE A+++F+EM  SG  PD     S
Sbjct: 190 RFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIAS 249

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
           +L+AC+  G  +KG +  +    K G+ P       ++DL  + G + EALE+ +S
Sbjct: 250 LLAACASIGDLNKGKQ-LHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKS 304



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 165/358 (46%), Gaps = 7/358 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N LIS +        A+ +F +MR  G   + VT+  LL  C   G L  G   H  
Sbjct: 210 VTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSY 269

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G+  D+ +   L+ +YVKCG +    ++F       ++ WN M+  Y Q       
Sbjct: 270 LLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKS 329

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            +L+ +M + GV P+  T+  +L +C + G  ++G ++       GF S+ +++  LI+M
Sbjct: 330 FDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDM 389

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++ G L KAR I + +  K VVSWT++I GY  H   + A++ F +M   GI PD    
Sbjct: 390 YSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGL 449

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S +SAC+      +G +  +      G       +  +V+L  R G+  EA  L E+ +
Sbjct: 450 ASAISACAGIKAMRQG-QQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEA-I 507

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGY--YVLLSNIYSEARNLD 368
              D   W  ++          L E A    IK+      Y  +  +S+I + A   D
Sbjct: 508 EHKDKITWNGMVSG---FAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLAD 562



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 167/347 (48%), Gaps = 4/347 (1%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           S    V + A++SGY  N L  EAV L+ +M   GV      +  +L  C        G 
Sbjct: 104 SARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGR 163

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
             H    K G   +  VGN L+ +Y++ GS+    ++F ++P    +T+N +IS +AQ G
Sbjct: 164 LVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCG 223

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
                LE++ EM+  G  PD VT   +L++CA +G  + G ++   +   G   +  +  
Sbjct: 224 NGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEG 283

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           +L+++Y +CG + +A  IF    R  VV W  ++  YG       +  LF +M+ +G+RP
Sbjct: 284 SLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRP 343

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           +   +  +L  C++AG  + G E  + +  K G +        ++D+  + G L++A  +
Sbjct: 344 NEFTYPCLLRTCTYAGEINLG-EQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRI 402

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFG--KVIKLEPMNTG 352
           +E +L   D   W +++     H+  + A   F   ++  + P N G
Sbjct: 403 LE-VLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIG 448


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/512 (40%), Positives = 294/512 (57%), Gaps = 9/512 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V ++A+I  Y L+    EA+ LF +MR  G VE N++T   +   C     L  G   H 
Sbjct: 52  VSWSAMIGAYALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHA 111

Query: 72  ICVKFGLDLDFS---VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
           + +  G +L  S   + N L+ MYV+CGS++  RK+FD +      +W +MI+   +N  
Sbjct: 112 LAMASG-ELKSSNAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCE 170

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
               LEL+  M   G+ P +VT   VL++CA  GA  VG ++  ++ A+GF S+     A
Sbjct: 171 LLEALELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTA 230

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           L++MYA+CG+L+ +  +F  M  +  VSWTA+I     HG G+ A++LF EM   G+  D
Sbjct: 231 LLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVAD 290

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
            T F+ VL ACSHAGL  + LE+F+ M   Y + P   HY   +D +GRAG+L +A ELI
Sbjct: 291 ATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELI 350

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
            SM   P+   W  LL AC+IH   E A      + KL P ++  Y LL N+Y+      
Sbjct: 351 HSMPFHPETLTWKTLLNACRIHSQAERATKVAELLSKLAPEDSMAYTLLGNVYAATGRYG 410

Query: 369 GIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHD 428
             MRVR  M +R LKK PG S++E+K +VH F+ GDR H    EI   L+KL   ++E  
Sbjct: 411 DQMRVRKGMTDRGLKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAG 470

Query: 429 GTKRSDQ----KNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
               +       N EE      +HSEKLAIAFG+I T PGT ++++KNLR+C DCH   K
Sbjct: 471 YVPNTKDVLHAVNEEEKEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATK 530

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +++KI+ R+ +VRD  RFHHF+ G CSCKDYW
Sbjct: 531 VIAKIMRRRIVVRDTHRFHHFEDGQCSCKDYW 562



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 137/267 (51%), Gaps = 6/267 (2%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG-V 144
           N L++MY KCG +D  R +F+ + E+ +++W+AMI  YA +G     L L+  M++ G V
Sbjct: 24  NGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYALHGRGQEALLLFHRMRNDGRV 83

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG--FGSNPFLNNALINMYARCGNLKKA 202
            P+A+TF GV ++C  +     G E+     A+G    SN  L NAL+NMY RCG+L++A
Sbjct: 84  EPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSNAILENALLNMYVRCGSLEEA 143

Query: 203 RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262
           R +FD M      SWT++I     +     A++LF  M   GI P      SVL+AC+ +
Sbjct: 144 RKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNACACS 203

Query: 263 GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGA 322
           G    G +  +   +  G        T ++D+  + G L  + ++  +M    +   W A
Sbjct: 204 GALKVG-KQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETR-NSVSWTA 261

Query: 323 LLGACKIHKNVELAELAFGKVIKLEPM 349
           ++ A   H   + A L   K + LE M
Sbjct: 262 MIAALAQHGQGDEA-LELFKEMNLEGM 287



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 91/173 (52%), Gaps = 5/173 (2%)

Query: 167 GLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGI 226
           G  +  ++   GF       N L++MYA+CG L +ARAIF+G+  +TVVSW+A+IG Y +
Sbjct: 4   GRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYAL 63

Query: 227 HGHGEVAVQLFDEMLKSG-IRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPG 284
           HG G+ A+ LF  M   G + P+   F  V +AC      ++G E +   M +       
Sbjct: 64  HGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSN 123

Query: 285 PEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
                 ++++  R G L EA ++ ++M   PD   W +++ AC   +N EL E
Sbjct: 124 AILENALLNMYVRCGSLEEARKVFDTM-DHPDAFSWTSMITACT--ENCELLE 173


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/520 (40%), Positives = 298/520 (57%), Gaps = 6/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE    +   V + AL SGY  +    EA+ LF KM E GV+ +S  ++ +L  CV  
Sbjct: 168 LFDEIPDRS--VVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHV 225

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  G        +  +  +  V   L+ +Y KCG ++  R +FD + EK ++TW+ MI
Sbjct: 226 GDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMI 285

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GYA N      +EL+ +M    + PD  + VG LSSCA LGA  +G      I  + F 
Sbjct: 286 QGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFL 345

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           +N F+ NALI+MYA+CG + +   +F  M  K +V   A I G   +GH +++  +F + 
Sbjct: 346 TNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQT 405

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            K GI PDG+ F+ +L  C HAGL   GL +F  +   Y L+   EHY CMVDL GRAG 
Sbjct: 406 EKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGM 465

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L++A  LI  M + P+  VWGALL  C++ K+ +LAE    ++I LEP N G YV LSNI
Sbjct: 466 LDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNI 525

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           YS     D    VR MM ++ +KK PGYS++EL+G+VH F+  D++H  + +IY  L+ L
Sbjct: 526 YSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDL 585

Query: 421 ENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
            N ++       ++        EE       HSEKLA+A G+I+T  G  I V+KNLR+C
Sbjct: 586 GNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVC 645

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           GDCH  +KL+SKI  R+ +VRD  RFH F +G CSC DYW
Sbjct: 646 GDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685



 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 181/332 (54%), Gaps = 2/332 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           YN+LI+G+V N L  E + LF  +R+ G+ ++  T   +L  C       LG+  H + V
Sbjct: 79  YNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVV 138

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K G + D +    L+++Y   G ++   KLFD++P++ ++TW A+ SGY  +G     ++
Sbjct: 139 KCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAID 198

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+++M  +GV PD+   V VLS+C H+G    G  + + ++      N F+   L+N+YA
Sbjct: 199 LFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYA 258

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG ++KAR++FD M  K +V+W+ +I GY  +   +  ++LF +ML+  ++PD  + V 
Sbjct: 259 KCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVG 318

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
            LS+C+  G  D G E+   + +++           ++D+  + G +    E+ + M  E
Sbjct: 319 FLSSCASLGALDLG-EWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEM-KE 376

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
            D  +  A +     + +V+L+   FG+  KL
Sbjct: 377 KDIVIMNAAISGLAKNGHVKLSFAVFGQTEKL 408



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 123/255 (48%), Gaps = 2/255 (0%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   +   L  D  + N L+   +      Y   LF       +  +N++I+G+  N L 
Sbjct: 33  HVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLINGFVNNHLF 92

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              L+L+  ++  G+     TF  VL +C    +  +G+++   +   GF  +     +L
Sbjct: 93  HETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSL 152

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           +++Y+  G L  A  +FD +P ++VV+WTA+  GY   G    A+ LF +M++ G++PD 
Sbjct: 153 LSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDS 212

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
              V VLSAC H G  D G E+      +  +Q      T +V+L  + G++ +A  + +
Sbjct: 213 YFIVQVLSACVHVGDLDSG-EWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFD 271

Query: 310 SMLVEPDGAVWGALL 324
           SM VE D   W  ++
Sbjct: 272 SM-VEKDIVTWSTMI 285


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/524 (40%), Positives = 298/524 (56%), Gaps = 52/524 (9%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           V DE   S    V +N+L++GY  N    +A+ +  +M    +  ++ TM  LLP     
Sbjct: 198 VLDE--MSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLP----- 250

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLM--TMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
                                 +V N      MYVK         +F ++ +K L++WN 
Sbjct: 251 ----------------------AVSNTTTENVMYVK--------DMFFKMGKKSLVSWNV 280

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           MI  Y +N +    +ELY  M++ G  PDAV+   VL +C    A S+G ++   I+   
Sbjct: 281 MIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKK 340

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
              N  L NALI+MYA+CG L +AR +F+ M  + VVSWTA+I  YG  G G  AV LF 
Sbjct: 341 LIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFS 400

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
           +M  SG+ PD  AFV+ L+ACSHAGL ++G   F  M + Y + P  EH  CMVDLLGRA
Sbjct: 401 KMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRA 460

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           G++ EA + I+ M +EP+  VWGALLGAC++H N ++  LA  K+ +L P  +GYYVLLS
Sbjct: 461 GKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKLFQLAPEQSGYYVLLS 520

Query: 359 NIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD 418
           NIY++A   + +  +R +M+ + LKK+PG S VE+   +H F+VGDR+H Q+ EIYR LD
Sbjct: 521 NIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSAEIYRELD 580

Query: 419 KLENLVQE-------HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINT---SPGTEIV 468
            L   ++E              ++++ E HL    VHSEKLAI F ++NT        I 
Sbjct: 581 VLVKKMKELGYVPDSESALHDVEEEDKETHL---AVHSEKLAIVFALMNTEEEDSNNAIR 637

Query: 469 VMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSC 512
           + KNLRICGDCH+  KL+S+I  R+ I+RD  RFH F+ G CSC
Sbjct: 638 ITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSC 681



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 146/326 (44%), Gaps = 37/326 (11%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  +     +  N +I  YV N    E + +FG M    V+ +  T  C+L  C   
Sbjct: 97  VFDEIPERN--VIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCS 154

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G + +G   H    K GL     VGN L++MY KCG +   R + D++  + +++WN+++
Sbjct: 155 GNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLV 214

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GYAQN      LE+ REM+S+ +  DA T   +L + ++    +V              
Sbjct: 215 AGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV-------------- 260

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
                      MY         + +F  M +K++VSW  +IG Y  +     AV+L+  M
Sbjct: 261 -----------MY--------VKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGM 301

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
              G  PD  +  SVL AC        G +  +G   +  L P       ++D+  + G 
Sbjct: 302 EADGFEPDAVSITSVLPACGDTSALSLG-KKIHGYIERKKLIPNLLLENALIDMYAKCGC 360

Query: 301 LNEALELIESMLVEPDGAVWGALLGA 326
           L+ A ++ E+M    D   W A++ A
Sbjct: 361 LDRARDVFENMKSR-DVVSWTAMISA 385



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 131/278 (47%), Gaps = 11/278 (3%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   +   L  + S+G  LM  Y     V   RK+FD++PE+ +I  N MI  Y  NG  
Sbjct: 63  HSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFY 122

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              ++++  M S  V PD  TF  VL +C+  G   +G ++       G  S  F+ N L
Sbjct: 123 REGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGL 182

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++MY +CG L +AR + D M R+ VVSW +++ GY  +   + A+++  EM    I  D 
Sbjct: 183 VSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDA 242

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
               S+L A S+   T + + Y   M  K G +     +  M+ +  +     EA+EL  
Sbjct: 243 GTMASLLPAVSNT--TTENVMYVKDMFFKMG-KKSLVSWNVMIGVYMKNAMPVEAVELYS 299

Query: 310 SMLV---EPDGAVWGALLGACKIHKNVELAELAFGKVI 344
            M     EPD     ++L AC      + + L+ GK I
Sbjct: 300 GMEADGFEPDAVSITSVLPACG-----DTSALSLGKKI 332



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 2/156 (1%)

Query: 170 VEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGH 229
           V  +I +     N  L   L+  YA   ++  AR +FD +P + V+    +I  Y  +G 
Sbjct: 62  VHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGF 121

Query: 230 GEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYT 289
               +Q+F  M    ++PD   F  VL ACS +G    G +  +G   K GL        
Sbjct: 122 YREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIG-KKIHGSATKVGLSSTLFVGN 180

Query: 290 CMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
            +V + G+ G L+EA  +++ M    D   W +L+ 
Sbjct: 181 GLVSMYGKCGFLSEARLVLDEM-SRRDVVSWNSLVA 215


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/516 (38%), Positives = 310/516 (60%), Gaps = 46/516 (8%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE +      V +N LISGY  + +V +A  +F  M E+ + ++  TM+         
Sbjct: 184 LFDEMV--VRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNL-VSWSTMI--------- 231

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
                                        + Y + G+++  R+LF+ +P + +++WNAMI
Sbjct: 232 -----------------------------SGYARVGNLEEARQLFENMPMRNVVSWNAMI 262

Query: 121 SGYAQNGLATHVLELYREMKSLG-VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           +GYAQN      +EL+R+M+  G + P+ VT V VLS+CAHLGA  +G  + + I+ N  
Sbjct: 263 AGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKI 322

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
               FL NAL +MYA+CG + +A+ +F  M  + V+SW+ II G  ++G+   A   F E
Sbjct: 323 EVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAE 382

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M++ G+ P+  +F+ +L+AC+HAGL DKGLEYF  M   YG+ P  EHY C+VDLL RAG
Sbjct: 383 MIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAG 442

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
           +L++A  LI SM ++P+  VWGALLG C+I+K+ E  E    ++++L+  ++G  V L+N
Sbjct: 443 RLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLAN 502

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
           +Y+    LD     R+ MR+ +  K PG S++E+   V+ F +GD +H Q++ IY M+ +
Sbjct: 503 VYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRE 562

Query: 420 LENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRI 475
           L+  ++      ++D      + EE  +    HSEKLA+AFG+INTS GT I ++KNLR+
Sbjct: 563 LKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRV 622

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCS 511
           C DCH  IK++SKIV+R+ +VRD +RFHHFK G CS
Sbjct: 623 CNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCS 658



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 105/239 (43%), Gaps = 20/239 (8%)

Query: 112 GLITWNAMISGYAQNGLATHVLELYREMKSL--GVCPDAVTFVGVLSSCAHLGAHSVGLE 169
            +  +NA++  ++Q+      +  +     L     PD  TF  VL +CA L     G +
Sbjct: 89  NIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQK 148

Query: 170 VEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGH 229
           V   +   G  SN F+ N+L+++Y + G    A+ +FD M  + VVSW  +I GY   G 
Sbjct: 149 VHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGM 208

Query: 230 GEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYT 289
            + A  +FD M++  +     ++ +++S  +  G  ++  + F  M  +  +      + 
Sbjct: 209 VDKARMVFDGMMEKNL----VSWSTMISGYARVGNLEEARQLFENMPMRNVVS-----WN 259

Query: 290 CMVDLLGRAGQLNEALELIESMLVE----PDGAVWGALLGACKIHKNVELAELAFGKVI 344
            M+    +  +  +A+EL   M  E    P+     ++L AC       L  L  GK I
Sbjct: 260 AMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSAC-----AHLGALDLGKWI 313


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/509 (37%), Positives = 294/509 (57%), Gaps = 5/509 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + YN +I+ Y  N    E+  LF K++    +        LL I      L +G   HC 
Sbjct: 308 ISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQ 367

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +  G + +  V N L+ MY KC      +K+FD +  K  + W AMIS Y Q G     
Sbjct: 368 AITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEG 427

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + ++ +M+  GV  D  TF  +L +CA+L + S+G ++   +  +GF SN +  +AL++ 
Sbjct: 428 INVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDT 487

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG +  A   F  MP +  VSW A+I  Y  +G+ +  +  F +M++SG +PD  +F
Sbjct: 488 YAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSF 547

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +SVLSACSH G  ++ L +F  M   Y + P  EHYT MVD+L R G+ +EA +L+  M 
Sbjct: 548 LSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMP 607

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPM-NTGYYVLLSNIYSEARNLDGIM 371
            EP   +W ++L +C+IHKN ELA+ A  ++  +E + +   Y+ +SNIY+ A   D + 
Sbjct: 608 FEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVA 667

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH---- 427
           +V+  MR+R ++K P YS+VE+K + H+F   D++H +  +I R ++ L   +++     
Sbjct: 668 KVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEMEKKGYKP 727

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           D T      +    +   + HSE+ AIAF ++NT  G+ IVVMKNLR C DCH  IK++S
Sbjct: 728 DTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPIVVMKNLRACTDCHAAIKVIS 787

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +IV+R+ IVRD++RFHHFK G CSC DYW
Sbjct: 788 QIVEREIIVRDSSRFHHFKDGVCSCGDYW 816



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 172/353 (48%), Gaps = 12/353 (3%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           TV +N+L++GY    L  EA+ LF ++   G++ +  T   LL   V       G   H 
Sbjct: 206 TVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHG 265

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K     +  VGN L+  Y K   VD   KLF ++PE   I++N +I+ YA NG    
Sbjct: 266 FVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKE 325

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI--QANGFGSN--PFLNN 187
             +L+R+++          F  +LS    +   S+ L + +QI  QA   G+N    + N
Sbjct: 326 SFDLFRKLQFTRFDRRQFPFATLLS----IATSSLNLRMGRQIHCQAITVGANFESRVEN 381

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           AL++MYA+C   K+A+ IFD +  K+ V WTA+I  Y   G  E  + +F +M ++G+  
Sbjct: 382 ALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPA 441

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           D   F S+L AC++      G +  + +  + G        + ++D   + G + +A++ 
Sbjct: 442 DQATFASILRACANLASISLGRQ-LHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKS 500

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
              M  E +   W AL+ A   + NV+    +F ++I+   +P +  +  +LS
Sbjct: 501 FGEM-PERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLS 552



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 133/278 (47%), Gaps = 3/278 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           TV + A+IS YV      E +++F  MR  GV  +  T   +L  C +   + LG   H 
Sbjct: 408 TVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHS 467

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + ++ G   +   G+ L+  Y KCG +    K F ++PE+  ++WNA+IS YAQNG    
Sbjct: 468 LLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDG 527

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGL-EVEQQIQANGFGSNPFLNNALI 190
            L  +++M   G  PD+V+F+ VLS+C+H G     L       Q            +++
Sbjct: 528 TLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMV 587

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++  R G   +A  +   MP   + + W++++    IH + E+A +  D +       D 
Sbjct: 588 DVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDA 647

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH 287
             ++++ +  + AG  D   +    M+++ G++  P +
Sbjct: 648 APYINMSNIYAVAGQWDNVAKVKKAMRDR-GVRKVPAY 684



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 93/401 (23%), Positives = 174/401 (43%), Gaps = 43/401 (10%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD  ++ T   V +  LI GY+ ++   EA  L+  MR  G+E + VT++ LL    + 
Sbjct: 96  LFDGMVERT--AVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGEL 153

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
               + +  H   +K G + +  V N L+  Y K   +    +LF  +  K  +T+N+++
Sbjct: 154 ETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLM 213

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GY+  GL    +EL+ E+ + G+ P   TF  +LS+   L     G +V   +    F 
Sbjct: 214 TGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFV 273

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            N F+ NAL++ Y++   + +   +F  MP    +S+  +I  Y  +G  + +  LF ++
Sbjct: 274 WNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKL 333

Query: 241 LKSGIRPDGTAFVSVLSACS-----------HAGLTDKGLEYFYGMKNK----YGLQPGP 285
             +        F ++LS  +           H      G  +   ++N     Y    G 
Sbjct: 334 QFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGD 393

Query: 286 EH---------------YTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGAC 327
           +                +T M+    + G+  E + +   M    V  D A + ++L AC
Sbjct: 394 KEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRAC 453

Query: 328 KIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
                  LA ++ G+ +    + +G+   +SN+YS +  LD
Sbjct: 454 -----ANLASISLGRQLHSLLIRSGF---MSNVYSGSALLD 486



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 97/181 (53%), Gaps = 2/181 (1%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N +++ ++K G +   R+LFD + E+  ++W  +I GY Q+  +     LY +M+  G+ 
Sbjct: 78  NMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIE 137

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           PD VT V +LS    L   +V +++   +   G+  N  + N+L++ Y +   L  A  +
Sbjct: 138 PDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQL 197

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           F  M  K  V++ +++ GY   G  E A++LF E+  SGI+P    F ++LSA    GL 
Sbjct: 198 FKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAA--VGLD 255

Query: 266 D 266
           D
Sbjct: 256 D 256



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 31/119 (26%)

Query: 170 VEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK----------------- 212
           ++  I   GF  N   +N  +N +   G+L  A  +FD MP K                 
Sbjct: 30  IDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGK 89

Query: 213 --------------TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257
                         T VSWT +IGGY      + A +L+ +M + GI PD    V++LS
Sbjct: 90  LSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLS 148


>gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
          Length = 619

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/511 (40%), Positives = 300/511 (58%), Gaps = 13/511 (2%)

Query: 16  NALISGYVLNSLVS---EAVSLFGKMREQGVEINSVTMLCLLPICVD-PGYLWLGMCCHC 71
           N LI  +  + L S    A S F  M       N  T   LL  C   PG   +G+  H 
Sbjct: 112 NTLIRAHAASPLPSARLRAASFFPLMLRSATLPNKFTFPFLLKACAAFPG---VGVQAHA 168

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYG--RKLFDQVPEKGLITWNAMISGYAQNGLA 129
             +KFG   D  V N L+ MY   G    G  R +FD++ +   +TW+AMI GY ++GL+
Sbjct: 169 AALKFGFTTDQYVSNTLIHMYSCFGGEFLGDARNVFDRMAKSSAVTWSAMIGGYVRSGLS 228

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
           +  + L+REM++ GV PD VT +GVL++ A LGA  +   V + ++  G G +  L NAL
Sbjct: 229 SDAVGLFREMQASGVRPDEVTMIGVLAAAADLGALELARWVGRFVEKEGIGKSVTLCNAL 288

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           I+  A+CG+L  A A+F GM  +T+VSWT++I    + G G+ AV +F+EM  +G+RPD 
Sbjct: 289 IDALAKCGDLDGAMAVFQGMKERTIVSWTSVIDALAMEGRGKEAVAVFEEMKTAGVRPDD 348

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
            AF+ VL+ACSHAG+ D+G  YF  M+  YG+ P  EHY CMVD+ GRAG +  A+E + 
Sbjct: 349 VAFIGVLTACSHAGMVDEGYGYFESMRMAYGIDPKIEHYGCMVDMFGRAGMVERAMEFVH 408

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDG 369
            M ++P+  +W  L+ AC+ H  +EL E     ++   P +   YV+LSN+Y+  R    
Sbjct: 409 KMPMKPNPIIWRTLVAACRAHGRLELGETITRNLLNEYPAHEANYVMLSNVYALTRRWKE 468

Query: 370 IMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDG 429
              +R  M +R +KK PG S VEL G VH F+ GD +H Q  EIY M++++   ++    
Sbjct: 469 KSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQWKEIYMMVEEMARELRRAGH 528

Query: 430 TKRSDQKNSEEHLNDTEV----HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
              + +   +    D EV    HSEKLAIAF ++ T PGT++ V+KNLR+C DCH  IK 
Sbjct: 529 ISATSEVLLDLDEEDKEVALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCSDCHAAIKC 588

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +S + +R+ IVRD +RFH FK+G CSC D+W
Sbjct: 589 ISLVYNREIIVRDRSRFHRFKNGSCSCNDFW 619



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 127/248 (51%), Gaps = 14/248 (5%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD   KS+ +T  ++A+I GYV + L S+AV LF +M+  GV  + VTM+ +L    D 
Sbjct: 203 VFDRMAKSSAVT--WSAMIGGYVRSGLSSDAVGLFREMQASGVRPDEVTMIGVLAAAADL 260

Query: 61  GYL----WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
           G L    W+G        K G+    ++ N L+    KCG +D    +F  + E+ +++W
Sbjct: 261 GALELARWVGRFVE----KEGIGKSVTLCNALIDALAKCGDLDGAMAVFQGMKERTIVSW 316

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
            ++I   A  G     + ++ EMK+ GV PD V F+GVL++C+H G    G    + ++ 
Sbjct: 317 TSVIDALAMEGRGKEAVAVFEEMKTAGVRPDDVAFIGVLTACSHAGMVDEGYGYFESMRM 376

Query: 177 NGFGSNPFLNN--ALINMYARCGNLKKARAIFDGMPRK-TVVSWTAIIGGYGIHGHGEVA 233
             +G +P + +   +++M+ R G +++A      MP K   + W  ++     HG  E+ 
Sbjct: 377 -AYGIDPKIEHYGCMVDMFGRAGMVERAMEFVHKMPMKPNPIIWRTLVAACRAHGRLELG 435

Query: 234 VQLFDEML 241
             +   +L
Sbjct: 436 ETITRNLL 443


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/527 (39%), Positives = 301/527 (57%), Gaps = 27/527 (5%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +     V + ++ISGY +N+ V  A  LF  M ++    N VT   +L      
Sbjct: 193 IFDEMPQRN--VVAWTSMISGYAMNNKVDVARKLFEVMPDK----NEVTWTAMLKGYTRS 246

Query: 61  GY------LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLI 114
           G       L+  M    +    G+ + F +           G V   R +FDQ+ EK   
Sbjct: 247 GRINEAAELFKAMPVKPVAACNGMIMGFGLN----------GEVGKARWVFDQMKEKDDG 296

Query: 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
           TW+A+I  Y + G     L L+  M+  GV P+  + + +LS C  L +   G +V  Q+
Sbjct: 297 TWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQL 356

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
             + F  + ++++ LI MY +CG+L   + +FD    K +V W +II GY  HG GE A+
Sbjct: 357 VRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKAL 416

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
           ++F EM  SG  PD   F+ VLSAC + G   +GLE F  MK+KY +    EHY CMVDL
Sbjct: 417 EVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDL 476

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           LGRAG+LNEA+ LIE+M VE D  VWGALL AC+ HKN++LAE+A  K+++LEP + G Y
Sbjct: 477 LGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQLEPSSAGPY 536

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVE-I 413
           +LLSN+Y+       +  +R  MR R + K PG S++E+  +VH+F  G    H   E I
Sbjct: 537 ILLSNLYASQSRWKDVAELRKTMRARNVSKSPGCSWIEVDNKVHMFTGGGSASHPEHEMI 596

Query: 414 YRMLDKLENLVQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVV 469
            + L+KL   ++E     DG+      + E+ ++    HSEK+A+A+G++    G  I V
Sbjct: 597 MKKLEKLGASLREAGYCPDGSFVMHDVDEEDKVHSLRHHSEKMAVAYGLLKVPVGKPIRV 656

Query: 470 MKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           MKNLR+CGDCH  IKL++++  R+ I+RDA RFHHFK G CSC+D+W
Sbjct: 657 MKNLRVCGDCHSAIKLIAQVTGREIILRDANRFHHFKDGLCSCRDFW 703



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 158/362 (43%), Gaps = 68/362 (18%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD+ ++S  +T  +NA+++GY  N   +EA  LF KM E+    N+++           
Sbjct: 38  IFDD-LQSKTVT-SWNAIVAGYFHNKRPAEAQKLFDKMPER----NTIS----------- 80

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
              W                     N L++ YVK G +   RK+FD++PE+ +++W +M+
Sbjct: 81  ---W---------------------NGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMV 116

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GY Q GL      L+  M    V    V   G++      G       +   I      
Sbjct: 117 RGYVQEGLIDEAELLFWRMPEKNVVSWTVMLGGLIED----GRVDEARRLFDMIPVK--- 169

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            +   +  +I      G L +AR IFD MP++ VV+WT++I GY ++   +VA +LF+ M
Sbjct: 170 -DVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVM 228

Query: 241 LKSGIRPDGT--AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC--MVDLLG 296
                 PD     + ++L   + +G  ++  E F  M       P      C  M+   G
Sbjct: 229 ------PDKNEVTWTAMLKGYTRSGRINEAAELFKAM-------PVKPVAACNGMIMGFG 275

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356
             G++ +A  + + M  E D   W AL+   +  K  EL  LA   +++ E +   +  +
Sbjct: 276 LNGEVGKARWVFDQM-KEKDDGTWSALIKIYE-RKGFELEALALFSLMQREGVRPNFPSI 333

Query: 357 LS 358
           +S
Sbjct: 334 IS 335



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 123/289 (42%), Gaps = 45/289 (15%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGV---------------------------E 44
           T+ +N L+SGYV N ++SEA  +F KM E+ V                           E
Sbjct: 78  TISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPE 137

Query: 45  INSVTMLCLLPICVDPGYL-WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRK 103
            N V+   +L   ++ G +         I VK     D      ++      G +   R+
Sbjct: 138 KNVVSWTVMLGGLIEDGRVDEARRLFDMIPVK-----DVVASTNMIGGLCSEGRLSEARE 192

Query: 104 LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDA--VTFVGVLSSCAHL 161
           +FD++P++ ++ W +MISGYA N       +L+       V PD   VT+  +L      
Sbjct: 193 IFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFE------VMPDKNEVTWTAMLKGYTRS 246

Query: 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
           G  +   E+ + +      +     N +I  +   G + KAR +FD M  K   +W+A+I
Sbjct: 247 GRINEAAELFKAMPVKPVAA----CNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALI 302

Query: 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270
             Y   G    A+ LF  M + G+RP+  + +S+LS C      D G +
Sbjct: 303 KIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQ 351



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 141/324 (43%), Gaps = 43/324 (13%)

Query: 83  SVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL 142
           ++  C ++ + + G +D  R +FD +  K + +WNA+++GY  N       +L+ +M   
Sbjct: 17  AITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPER 76

Query: 143 GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202
               + +++ G++S     G  S   +V  ++       N     +++  Y + G + +A
Sbjct: 77  ----NTISWNGLVSGYVKNGMISEARKVFDKMPER----NVVSWTSMVRGYVQEGLIDEA 128

Query: 203 RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262
             +F  MP K VVSWT ++GG    G  + A +LFD +       D  A  +++      
Sbjct: 129 ELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVK----DVVASTNMIGGLCSE 184

Query: 263 GLTDKGLEYF-----------------YGMKNK-------YGLQPGPEH--YTCMVDLLG 296
           G   +  E F                 Y M NK       + + P      +T M+    
Sbjct: 185 GRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYT 244

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356
           R+G++NEA EL ++M V+P  A  G ++G   ++  V  A   F    +++  + G +  
Sbjct: 245 RSGRINEAAELFKAMPVKPVAACNGMIMG-FGLNGEVGKARWVFD---QMKEKDDGTWSA 300

Query: 357 LSNIYS-EARNLDGIMRVRMMMRE 379
           L  IY  +   L+ +    +M RE
Sbjct: 301 LIKIYERKGFELEALALFSLMQRE 324



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 10/147 (6%)

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
           F S+  +    I+ +AR G + +AR IFD +  KTV SW AI+ GY  +     A +LFD
Sbjct: 12  FSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFD 71

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
           +M +     +  ++  ++S     G+  +  + F  M  +  +      +T MV    + 
Sbjct: 72  KMPER----NTISWNGLVSGYVKNGMISEARKVFDKMPERNVVS-----WTSMVRGYVQE 122

Query: 299 GQLNEALELIESMLVEPDGAVWGALLG 325
           G ++EA EL+   + E +   W  +LG
Sbjct: 123 GLIDEA-ELLFWRMPEKNVVSWTVMLG 148


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/509 (37%), Positives = 294/509 (57%), Gaps = 5/509 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + YN +I+ Y  N    E+  LF K++    +        LL I      L +G   HC 
Sbjct: 308 ISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQ 367

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +  G + +  V N L+ MY KC      +K+FD +  K  + W AMIS Y Q G     
Sbjct: 368 AITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEG 427

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + ++ +M+  GV  D  TF  +L +CA+L + S+G ++   +  +GF SN +  +AL++ 
Sbjct: 428 INVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDT 487

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG +  A   F  MP +  VSW A+I  Y  +G+ +  +  F +M++SG +PD  +F
Sbjct: 488 YAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSF 547

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +SVLSACSH G  ++ L +F  M   Y + P  EHYT MVD+L R G+ +EA +L+  M 
Sbjct: 548 LSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMP 607

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPM-NTGYYVLLSNIYSEARNLDGIM 371
            EP   +W ++L +C+IHKN ELA+ A  ++  +E + +   Y+ +SNIY+ A   D + 
Sbjct: 608 FEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVA 667

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH---- 427
           +V+  MR+R ++K P YS+VE+K + H+F   D++H +  +I R ++ L   +++     
Sbjct: 668 KVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEMEKKGYKP 727

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           D T      +    +   + HSE+ AIAF ++NT  G+ IVVMKNLR C DCH  IK++S
Sbjct: 728 DTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPIVVMKNLRACTDCHAAIKVIS 787

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +IV+R+ IVRD++RFHHFK G CSC DYW
Sbjct: 788 QIVEREIIVRDSSRFHHFKDGVCSCGDYW 816



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 172/353 (48%), Gaps = 12/353 (3%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           TV +N+L++GY    L  EA+ LF ++   G++ +  T   LL   V       G   H 
Sbjct: 206 TVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHG 265

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K     +  VGN L+  Y K   VD   KLF ++PE   I++N +I+ YA NG    
Sbjct: 266 FVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKE 325

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI--QANGFGSN--PFLNN 187
             +L+R+++          F  +LS    +   S+ L + +QI  QA   G+N    + N
Sbjct: 326 SFDLFRKLQFTRFDRRQFPFATLLS----IATSSLNLRMGRQIHCQAITVGANFESRVEN 381

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           AL++MYA+C   K+A+ IFD +  K+ V WTA+I  Y   G  E  + +F +M ++G+  
Sbjct: 382 ALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPA 441

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           D   F S+L AC++      G +  + +  + G        + ++D   + G + +A++ 
Sbjct: 442 DQATFASILRACANLASISLGRQ-LHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKS 500

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
              M  E +   W AL+ A   + NV+    +F ++I+   +P +  +  +LS
Sbjct: 501 FGEM-PERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLS 552



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 133/278 (47%), Gaps = 3/278 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           TV + A+IS YV      E +++F  MR  GV  +  T   +L  C +   + LG   H 
Sbjct: 408 TVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHS 467

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + ++ G   +   G+ L+  Y KCG +    K F ++PE+  ++WNA+IS YAQNG    
Sbjct: 468 LLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDG 527

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGL-EVEQQIQANGFGSNPFLNNALI 190
            L  +++M   G  PD+V+F+ VLS+C+H G     L       Q            +++
Sbjct: 528 TLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMV 587

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++  R G   +A  +   MP   + + W++++    IH + E+A +  D +       D 
Sbjct: 588 DVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDA 647

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH 287
             ++++ +  + AG  D   +    M+++ G++  P +
Sbjct: 648 APYINMSNIYAVAGQWDNVAKVKKAMRDR-GVRKVPAY 684



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/401 (23%), Positives = 174/401 (43%), Gaps = 43/401 (10%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD  ++ T   V +  LI GY+ ++   EA  L+  MR  G+E + VT++ LL    + 
Sbjct: 96  LFDGMVERT--AVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGEL 153

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
               + +  H   +K G + +  V N L+  Y K   +    +LF  +  K  +T+N+++
Sbjct: 154 ETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLM 213

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GY+  GL    +EL+ E+ + G+ P   TF  +LS+   L     G +V   +    F 
Sbjct: 214 TGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFV 273

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            N F+ NAL++ Y++   + +   +F  MP    +S+  +I  Y  +G  + +  LF ++
Sbjct: 274 WNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKL 333

Query: 241 LKSGIRPDGTAFVSVLSACS-----------HAGLTDKGLEYFYGMKNK----YGLQPGP 285
             +        F ++LS  +           H      G  +   ++N     Y    G 
Sbjct: 334 QFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGD 393

Query: 286 EH---------------YTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGAC 327
           +                +T M+    + G+  E + +   M    V  D A + ++L AC
Sbjct: 394 KEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRAC 453

Query: 328 KIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
                  LA ++ G+ +    + +G+   +SN+YS +  LD
Sbjct: 454 -----ANLASISLGRQLHSLLIRSGF---MSNVYSGSALLD 486



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 119/242 (49%), Gaps = 4/242 (1%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N +++ ++K G +   R+LFD + E+  ++W  +I GY Q+  +     LY +M+  G+ 
Sbjct: 78  NMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIE 137

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           PD VT V +LS    L   +V +++   +   G+  N  + N+L++ Y +   L  A  +
Sbjct: 138 PDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQL 197

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           F  M  K  V++ +++ GY   G  E A++LF E+  SGI+P    F ++LSA    GL 
Sbjct: 198 FKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAA--VGLD 255

Query: 266 DKGL-EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
           D    +  +G   K            ++D   +  Q++E  +L   M  E DG  +  ++
Sbjct: 256 DTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEM-PELDGISYNVVI 314

Query: 325 GA 326
            +
Sbjct: 315 TS 316



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 31/119 (26%)

Query: 170 VEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK----------------- 212
           ++  I   GF  N   +N  +N +   G+L  A  +FD MP K                 
Sbjct: 30  IDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGK 89

Query: 213 --------------TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257
                         T VSWT +IGGY      + A +L+ +M + GI PD    V++LS
Sbjct: 90  LSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLS 148


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/509 (38%), Positives = 295/509 (57%), Gaps = 16/509 (3%)

Query: 18  LISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFG 77
           ++ GY++ +   +A+ LF  + + G + + +T+      C     L  G   H   +K G
Sbjct: 1   MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAG 60

Query: 78  LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYR 137
            D D  V + ++ MY+KCG +     +F+ +     + W +MISG   NG     L +Y 
Sbjct: 61  FDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYH 120

Query: 138 EMKSLGVCPDAVTFVGVL--SSCAHLGAHSVGLEVEQQIQANGFG----SNPFLNNALIN 191
            M+   V PD  TF  ++  SSC         LE  +Q+ AN       S+PF+  +L++
Sbjct: 121 RMRQSRVMPDEYTFATLIKASSCV------TALEQGRQLHANVIKLDCVSDPFVGTSLVD 174

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+CGN++ A  +F  M  + +  W A++ G   HG+ E AV LF  M   GI PD  +
Sbjct: 175 MYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVS 234

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+ +LSACSHAGLT +  EY + M N YG++P  EHY+C+VD LGRAG + EA ++IE+M
Sbjct: 235 FIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETM 294

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
             +   ++  ALLGAC+I  +VE  +    ++  LEP ++  YVLLSNIY+ A   D + 
Sbjct: 295 PFKASASINRALLGACRIQGDVEXGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVT 354

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
             R MM+ + +KKDPG+S++++K  +HLF+V DR+H Q   IY  ++++   ++E     
Sbjct: 355 DARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVP 414

Query: 432 RSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
            ++        EE       HSEKLAIA+G+I+T   T I V+KNLR+CGDCH  IK +S
Sbjct: 415 DTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYIS 474

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K+ +R+ ++RDA RFHHF+ G CSC DYW
Sbjct: 475 KVFEREIVLRDANRFHHFRDGVCSCGDYW 503



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 134/274 (48%), Gaps = 15/274 (5%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + ++ISG V N    +A+ ++ +MR+  V  +  T   L+        L  G   H  
Sbjct: 97  VAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHAN 156

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K     D  VG  L+ MY KCG+++   +LF ++  + +  WNAM+ G AQ+G A   
Sbjct: 157 VIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEA 216

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN--NALI 190
           + L++ MKS G+ PD V+F+G+LS+C+H G  S   E    +  N +G  P +   + L+
Sbjct: 217 VNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSM-PNDYGIEPEIEHYSCLV 275

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWT-AIIGGYGIHGHGE----VAVQLFDEMLKSGI 245
           +   R G +++A  + + MP K   S   A++G   I G  E    VA +LF       +
Sbjct: 276 DALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVEXGKRVAARLF------AL 329

Query: 246 RP-DGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278
            P D  A+V + +  + A   D   +    MK K
Sbjct: 330 EPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRK 363


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/523 (37%), Positives = 302/523 (57%), Gaps = 12/523 (2%)

Query: 1    VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
            +FDE  +  +  V YN +I+ Y  N   +  + LF +M++ G +   +    +L +    
Sbjct: 491  LFDEMPERDN--VSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSL 548

Query: 61   GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
              + +G   H   V  GL  +  +GN L+ MY KCG +D  +  F    EK  I+W A+I
Sbjct: 549  PDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALI 608

Query: 121  SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            +GY QNG     L+L+ +M+  G+ PD  TF  ++ + + L    +G ++   +  +G+ 
Sbjct: 609  TGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYK 668

Query: 181  SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            S+ F  + L++MYA+CG L +A   FD MP +  +SW A+I  Y  +G  + A+++F+ M
Sbjct: 669  SSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGM 728

Query: 241  LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            L  G  PD   F+SVL+ACSH GL D+ ++YF+ MK++Y + P  EHY C++D LGR G 
Sbjct: 729  LHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGC 788

Query: 301  LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
             ++  +++  M  + D  +W ++L +C+IH N ELA +A  K+  +EP +   YV+LSNI
Sbjct: 789  FSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNI 848

Query: 361  YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
            Y+ A   +    V+ +MR+R ++K+ GYS+VE+K +++ F   D       EI    D+L
Sbjct: 849  YARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIK---DEL 905

Query: 421  ENLVQEHDGTKRSDQKNSEEHLNDTEV-------HSEKLAIAFGIINTSPGTEIVVMKNL 473
            + L +E D            H+ D E+       HSE+LAIAF ++NT  GT I +MKNL
Sbjct: 906  DRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNL 965

Query: 474  RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
              C DCH  IK++SKIV+R  IVRD+ RFHHFK G CSC DYW
Sbjct: 966  TACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 1008



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 158/315 (50%), Gaps = 18/315 (5%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V YNA++ G     L ++A+ LF  MR  G   + + +L                  H 
Sbjct: 415 AVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHPLHLL---------------QYSHS 459

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                 + L+  V N L+  Y KC  +D  R+LFD++PE+  +++N +I+ YA N  A  
Sbjct: 460 RSRSTSV-LNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAAT 518

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
           VL L+REM+ LG     + +  +LS    L    +G ++  Q+   G  S   L NALI+
Sbjct: 519 VLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALID 578

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY++CG L  A++ F     K+ +SWTA+I GY  +G  E A+QLF +M ++G+RPD   
Sbjct: 579 MYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRAT 638

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F S++ A S   +   G +  +    + G +      + +VD+  + G L+EAL   + M
Sbjct: 639 FSSIIKASSSLAMIGLGRQ-LHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEM 697

Query: 312 LVEPDGAVWGALLGA 326
             E +   W A++ A
Sbjct: 698 -PERNSISWNAVISA 711



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 103/418 (24%), Positives = 171/418 (40%), Gaps = 85/418 (20%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLL--PICVDPGYLWLGMCC 69
              +  ++  +      S+A+SLF  M  +GV  + VT+  +L  P C  P         
Sbjct: 319 ATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPS-------L 371

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   +KFGLD    V N L+  Y K G +   R++F ++ +K  +T+NAM+ G ++ GL 
Sbjct: 372 HPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLH 431

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
           T  L+L+  M+  G     +          HL  +S        +       N F+NN+L
Sbjct: 432 TQALQLFAAMRRAGYSRHPL----------HLLQYSHSRSRSTSVL------NVFVNNSL 475

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK------- 242
           ++ Y++C  L   R +FD MP +  VS+  II  Y  +      ++LF EM K       
Sbjct: 476 LDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQV 535

Query: 243 ---------SGIRPD----------------------GTAFVSVLSACSHAGLTDKGLEY 271
                    +G  PD                      G A + + S C   G+ D     
Sbjct: 536 LPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKC---GMLDAAKSN 592

Query: 272 FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGACK 328
           F     K  +      +T ++    + GQ  EAL+L   M    + PD A + +++ A  
Sbjct: 593 FSNRSEKSAIS-----WTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKA-- 645

Query: 329 IHKNVELAELAFGKVIKLEPMNTGYY------VLLSNIYSEARNLDGIMRVRMMMRER 380
              +  LA +  G+ +    + +GY        +L ++Y++   LD  +R    M ER
Sbjct: 646 ---SSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPER 700



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 9/161 (5%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N +++ Y   G +   + LF   P +   TW  M+  +A  G  +  L L+R M   GV 
Sbjct: 292 NLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVI 351

Query: 146 PDAVTFVGVLS--SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
           PD VT   VL+   C     H   ++        G  ++ F+ N L++ Y + G L  AR
Sbjct: 352 PDRVTVTTVLNLPGCTVPSLHPFAIKF-------GLDTHVFVCNTLLDAYCKHGLLAAAR 404

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
            +F  M  K  V++ A++ G    G    A+QLF  M ++G
Sbjct: 405 RVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAG 445



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 4/124 (3%)

Query: 138 EMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN----NALINMY 193
           +  S    P  VT   VL+   +LG  S+            F   P  N    N +++ Y
Sbjct: 239 KQPSSQAAPAGVTGFDVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAY 298

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
           +  G+L  A+ +F   P +   +WT ++  +   G    A+ LF  ML  G+ PD     
Sbjct: 299 SSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVT 358

Query: 254 SVLS 257
           +VL+
Sbjct: 359 TVLN 362



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 5/100 (5%)

Query: 197 GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL 256
           G+L +ARA+FD MP K + S   I+  Y   G    A  LF   L S  R + T +  ++
Sbjct: 271 GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLF---LSSPHR-NATTWTIMM 326

Query: 257 SACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
            A + AG T   L  F  M  + G+ P     T +++L G
Sbjct: 327 RAHAAAGRTSDALSLFRAMLGE-GVIPDRVTVTTVLNLPG 365


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/514 (38%), Positives = 297/514 (57%), Gaps = 19/514 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+ISGY+ N    +AV+LF  MR +GV+ N  T   +L +     +       H  
Sbjct: 372 VSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTV----QHAVFISEIHAE 427

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K   +   SVG  L+  +VK G++    K+F+ +  K +I W+AM++GYAQ G     
Sbjct: 428 VIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEA 487

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL--- 189
            +++ ++   G+ P+  TF  ++++C    A      VEQ  Q + +     LNNAL   
Sbjct: 488 AKIFHQLTREGIKPNEFTFCSIINACTAPTA-----SVEQGKQFHAYAIKLRLNNALCVS 542

Query: 190 ---INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
              + +YA+ GN++ A  IF     + +VSW ++I GY  HG  + A+++F+EM K  + 
Sbjct: 543 SSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLE 602

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
            D   F+ V+SAC+HAGL  KG  YF  M N + + P  EHY+CM+DL  RAG L +A++
Sbjct: 603 VDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMD 662

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366
           +I  M   P   VW  +L A ++H+N+EL +LA  K+I LEP ++  YVLLSNIY+ A N
Sbjct: 663 IINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLLSNIYAAAGN 722

Query: 367 LDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ- 425
               + VR +M +RR+KK+PGYS++E+K + + F+ GD +H  +  IY  L +L   ++ 
Sbjct: 723 WHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDHIYSKLSELNTRLRD 782

Query: 426 ---EHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLF 482
              + D          E+       HSE+LAIAFG+I T P   + ++KNLR+CGDCH F
Sbjct: 783 VGYQPDTNYVFHDIEDEQKETILSHHSERLAIAFGLIATLPEIPLQIVKNLRVCGDCHSF 842

Query: 483 IKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           IKLVS +  R  +VRD+ RFHHFK G CSC DYW
Sbjct: 843 IKLVSLVEKRYIVVRDSNRFHHFKGGLCSCGDYW 876



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/312 (31%), Positives = 164/312 (52%), Gaps = 3/312 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N L+  Y       EA+ LF  +   G+  +S TM C+L +C       +G   HC CV
Sbjct: 70  HNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCV 129

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K GL    SVGN L+ MY K G+V  GR++FD++ ++ +++WN++++GY+ N     V E
Sbjct: 130 KCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWE 189

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+  M+  G  PD  T   V+++ A+ GA ++G+++   +   GF +   + N+LI+M +
Sbjct: 190 LFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLS 249

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           + G L+ AR +FD M  K  VSW ++I G+ I+G    A + F+ M  +G +P    F S
Sbjct: 250 KSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFAS 309

Query: 255 VLSACSHAGLTDKGLEYFYGMKN-KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           V+ +C  A L + GL      K  K GL       T ++  L +  ++++A  L   M  
Sbjct: 310 VIKSC--ASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHG 367

Query: 314 EPDGAVWGALLG 325
                 W A++ 
Sbjct: 368 VQSVVSWTAMIS 379



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 163/346 (47%), Gaps = 9/346 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE        V +N+L++GY  N    +   LF  M+ +G   +  T+  ++    + 
Sbjct: 159 VFDE--MGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQ 216

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G + +GM  H + VK G + +  V N L++M  K G +   R +FD +  K  ++WN+MI
Sbjct: 217 GAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMI 276

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +G+  NG      E +  M+  G  P   TF  V+ SCA L    +   +  +   +G  
Sbjct: 277 AGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLS 336

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
           +N  +  AL+    +C  +  A ++F  M   ++VVSWTA+I GY  +G  + AV LF  
Sbjct: 337 TNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSL 396

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M + G++P+   + ++L+      +++   E       K   +      T ++D   + G
Sbjct: 397 MRREGVKPNHFTYSTILTVQHAVFISEIHAEVI-----KTNYEKSSSVGTALLDAFVKIG 451

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345
            +++A+++ E ++   D   W A+L         E A   F ++ +
Sbjct: 452 NISDAVKVFE-LIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTR 496



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 114/228 (50%), Gaps = 6/228 (2%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           + ++LFDQ P + L   N ++  Y++       L L+  +   G+ PD+ T   VLS CA
Sbjct: 54  FAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCA 113

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
                +VG +V  Q    G   +  + N+L++MY + GN++  R +FD M  + VVSW +
Sbjct: 114 GSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNS 173

Query: 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279
           ++ GY  +   +   +LF  M   G RPD     +V++A ++ G    G++  + +  K 
Sbjct: 174 LLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQ-IHALVVKL 232

Query: 280 GLQPGPEHYTC--MVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           G +   E   C  ++ +L ++G L +A  + ++M    D   W +++ 
Sbjct: 233 GFE--TERLVCNSLISMLSKSGMLRDARVVFDNM-ENKDSVSWNSMIA 277


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/509 (38%), Positives = 298/509 (58%), Gaps = 5/509 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +NA+I GY LN+   E+ +   KM+E G +  + +TM+ LLP C     + LG   H 
Sbjct: 294 VAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHG 353

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             ++ G      +   L+ MY +CG +     LF Q+ E+ LI+WNAMI+ Y +NG    
Sbjct: 354 FAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRK 413

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            + L++++ +  + PDA T   +L + A L +     ++   +      SN F++N+++ 
Sbjct: 414 AMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNSIVF 473

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY +CGNL +AR IFD M  K V+SW  +I  Y IHG G ++++LF EM + G  P+G+ 
Sbjct: 474 MYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGST 533

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           FVS+L +CS AGL ++G EYF  MK  Y + PG EHY C++DL+GR G L+ A   IE M
Sbjct: 534 FVSLLLSCSVAGLVNEGWEYFNSMKRDYNINPGIEHYGCILDLIGRTGNLDHAKNFIEEM 593

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            + P   +WG+LL A +   +VELAE+A   ++ LE  NTG YVLLSN+Y+EA   + + 
Sbjct: 594 PLAPTARIWGSLLTASRNKGDVELAEIAAEHILSLEHDNTGCYVLLSNMYAEAGRWEDVE 653

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----H 427
           R++  M++  L+K  G S V+L  +   F+  DR+ ++   +Y +LD +   + E    H
Sbjct: 654 RIKFHMKKEGLEKSVGCSVVDLSSKTFRFVNQDRSDNEINMVYDVLDIISKKIGEDVYVH 713

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
             TK       ++  N  + HS +LAI FG+I+T+ G  ++V KN+RIC  CH F K +S
Sbjct: 714 SLTKFRPSDLEKKRANSAKSHSLRLAICFGLISTTIGNPVLVRKNIRICEACHRFAKRIS 773

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +   R+ IVRD+  FHHF  G CSC DYW
Sbjct: 774 ETTKREIIVRDSKIFHHFNGGHCSCGDYW 802



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 163/318 (51%), Gaps = 7/318 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T  +N +I G+V N L  +AV  + +M   GV  ++ T   ++  C     L  G   H 
Sbjct: 91  TFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHG 150

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K GLDLD  +GN L+ MY K G ++    +F ++P + L++WN+MISGY   G    
Sbjct: 151 KVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWR 210

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L  +REM++ G+  D  + +G+L +C+  G    G E+  Q+  +    +  +  +L++
Sbjct: 211 SLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVD 270

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG-IRPDGT 250
           MYA+CG +  A  +FD +  K++V+W A+IGGY ++     +     +M + G + PD  
Sbjct: 271 MYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWI 330

Query: 251 AFVSVLSACSH--AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
             +++L  C+   A L  K +   +G   + G  P     T +VD+ G  G+L  A E +
Sbjct: 331 TMINLLPPCAQLEAILLGKSV---HGFAIRNGFLPHLVLETALVDMYGECGKLKPA-ECL 386

Query: 309 ESMLVEPDGAVWGALLGA 326
              + E +   W A++ +
Sbjct: 387 FGQMNERNLISWNAMIAS 404



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 118/237 (49%), Gaps = 2/237 (0%)

Query: 89  MTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDA 148
           ++ YV+ G +     LF+ + +     WN MI G+  NGL    ++ Y  M+  GV  D 
Sbjct: 67  LSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRGDN 126

Query: 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208
            T+  V+ +C  L   + G  V  ++  +G   + ++ N+LI MYA+ G ++ A  +F  
Sbjct: 127 FTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFRE 186

Query: 209 MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
           MP + +VSW ++I GY   G G  ++  F EM  SGI+ D  + + +L ACS  G    G
Sbjct: 187 MPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNG 246

Query: 269 LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
            E    M  +  L+      T +VD+  + G+++ A  L +  + +     W A++G
Sbjct: 247 KEIHCQMM-RSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQ-ITDKSIVAWNAMIG 301


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/537 (36%), Positives = 304/537 (56%), Gaps = 49/537 (9%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  ++SGYV      E++ LF +MR + V  + V ++ +L  CV      LG   H  
Sbjct: 334 VSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAF 393

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGS-------------------------------VDYG 101
            V +G+ +D  +GN L+ +Y KCG                                VD  
Sbjct: 394 IVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKA 453

Query: 102 RKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL 161
           R  F+++PEK +++WN M++ Y ++ L     E++ +M+S  V PD  T + +LSSCA +
Sbjct: 454 RDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKV 513

Query: 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
           GA + G+ V   I+ N  G +  L  ALI+MY +CG ++ A  IF  +  K V  WTA++
Sbjct: 514 GALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMM 573

Query: 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281
             Y + G    A+ L+ EM + G++PD   F+++L+ACSH GL D+G +YF  +++ Y +
Sbjct: 574 AAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNI 633

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG 341
            P   HY CMVDLLGR G L E ++ IE M +EPD ++W +L+ AC+ H NVELAE AF 
Sbjct: 634 IPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQAFK 693

Query: 342 KVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFM 401
           ++I+++P N G +VLLSNIY++A   D + +VR  + E  + K PG++ +E  G VH F+
Sbjct: 694 QLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFTMIEQNGVVHEFV 753

Query: 402 VGDRNHHQTVEIYRMLDKLEN--LVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGII 459
             +     + +I  ML  +E   LV+             +E  + T  HSE+LA+AFG+I
Sbjct: 754 ASNL---VSADILCMLQDIERRLLVK-------------QELSDTTSQHSERLAVAFGLI 797

Query: 460 NTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           N    + I V+ ++R+C DCH  +KL+S+  DR+ ++RD  RFH F  G CSCKDYW
Sbjct: 798 NNQENSPIRVVNSVRMCRDCHSVMKLISQAYDREIVIRDNYRFHRFTDGHCSCKDYW 854



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 116/386 (30%), Positives = 179/386 (46%), Gaps = 69/386 (17%)

Query: 7   KSTHLTV-CYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWL 65
           K TH  V  +N +IS YVL  +  EA+ LF +M   GV  + +TM+ L+  C     L +
Sbjct: 193 KMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEM 252

Query: 66  GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS---------------------------- 97
           G   H   V   L +  S+ NCL+ MY KCG                             
Sbjct: 253 GKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGY 312

Query: 98  -----VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFV 152
                +D  R+LFD++ E+ L++W  M+SGY Q G     LEL+++M+   V PD V  V
Sbjct: 313 VKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALV 372

Query: 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNL------------- 199
            VLS+C HL    +G  V   I   G   + FL NAL+++YA+CG L             
Sbjct: 373 TVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCK 432

Query: 200 ------------------KKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
                              KAR  F+ +P K +VSW  ++  Y  H     + ++F +M 
Sbjct: 433 SAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQ 492

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEY-FYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            S ++PD T  +S+LS+C+  G  + G+    Y  KN+ G+       T ++D+ G+ G 
Sbjct: 493 SSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLG--TALIDMYGKCGC 550

Query: 301 LNEALELIESMLVEPDGAVWGALLGA 326
           +  A E+  + ++E +  VW A++ A
Sbjct: 551 VEMAYEIF-TQIIEKNVFVWTAMMAA 575



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 162/351 (46%), Gaps = 36/351 (10%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           ++ +N L+   +      E +  +  M  QGV ++  T   L+  C     + LG   H 
Sbjct: 98  SIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHG 157

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K G   + S+ N LM +Y KCG +    +LF+++  + +I+WN MIS Y   G+   
Sbjct: 158 RILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYRE 217

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L+L+ EM   GV PD +T V ++S+CA L    +G  +   I  N       L N L++
Sbjct: 218 ALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVD 277

Query: 192 MYARCGNL---------------------------------KKARAIFDGMPRKTVVSWT 218
           MY++CG +                                  KAR +FD M  +++VSWT
Sbjct: 278 MYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWT 337

Query: 219 AIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278
            ++ GY   G+   +++LF +M    + PD  A V+VLSAC H    D G    +     
Sbjct: 338 TMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLG-RSVHAFIVT 396

Query: 279 YGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL-GACK 328
           YG+         ++DL  + G+L+EAL   E +  +   A W ++L G C+
Sbjct: 397 YGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCK-SAASWNSMLDGFCR 446



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 132/280 (47%), Gaps = 9/280 (3%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140
           D  + + ++   +   ++D   ++     E   I WN ++    + G    VLE Y  M 
Sbjct: 66  DPEITSQVLAFLLSVNNLDCAHQILSYSHEPESIIWNTLLENKLKEGCPQEVLECYYHMV 125

Query: 141 SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
           + GV  D  TF  ++ +C       +G EV  +I   GFG N  LNN L+ +Y++CG LK
Sbjct: 126 TQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLK 185

Query: 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
           +   +F+ M  + V+SW  +I  Y + G    A+ LFDEML SG+ PD    VS++S C+
Sbjct: 186 EVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCA 245

Query: 261 HAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM-LVEPDGA 318
                + G   + Y + NK  ++       C+VD+  + G+++EA  L+      E D  
Sbjct: 246 KLKDLEMGKRLHLYIVDNKLWIRGSL--LNCLVDMYSKCGKMDEAHGLLSRCDESEVDVV 303

Query: 319 VWGALLGACKIHKNVELAELAFGK-----VIKLEPMNTGY 353
           +W  L+        ++ A   F K     ++    M +GY
Sbjct: 304 LWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGY 343


>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 611

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/511 (39%), Positives = 303/511 (59%), Gaps = 10/511 (1%)

Query: 16  NALISGYVLNSLVS---EAVSLFGKMREQGVEINSVTMLCLLPICVD-PGYLWLGMCCHC 71
           N LI  +V +   S    A + F  M    V  N  T   LL  C   PG   +G+  H 
Sbjct: 101 NTLIRTHVTSPFPSARRRAAAFFPLMLRAAVAPNKFTFPFLLKSCAALPGSPDVGLQAHA 160

Query: 72  ICVKFGLDLDFSVGNCLMTMY--VKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
             +KFG   D  V N L+ MY     G +   R +F+++P +  +TW+AMI GY + GL+
Sbjct: 161 AALKFGFAADHYVSNTLIHMYSCFGAGFLGDARNVFERMPRESAVTWSAMIGGYVRAGLS 220

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
           +  + L+R M+  GV PD VT +GVL++ A LGA  +   V + ++  G G +  L NAL
Sbjct: 221 SDAVVLFRGMQVSGVRPDEVTVIGVLAAAADLGALELTRWVGRFVEREGIGKSVTLCNAL 280

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           I+  A+CG++  A A+F+GM  +TVVSWT++I    + G G+ AV +F+EM   G+ PD 
Sbjct: 281 IDTLAKCGDVDGAVAVFEGMEERTVVSWTSVIDALAMEGRGKEAVGVFEEMKAVGVLPDD 340

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
            AF+ VL+ACSHAG+ D+G  YF  MK +YG++P  EHY CMVD+ GRAG + + LE + 
Sbjct: 341 VAFIGVLTACSHAGMVDEGRGYFDSMKTEYGIEPKIEHYGCMVDMFGRAGMVEQGLEFVR 400

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDG 369
           +M ++P+  +W  L+ AC+ H  +EL E     ++   P +   YV+LSN+Y+  +    
Sbjct: 401 AMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEFPAHEANYVMLSNVYALTQRWKE 460

Query: 370 IMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDG 429
              +R  M +R +KK PG S VEL G VH F+ GD +H Q  EIYRM++++   ++    
Sbjct: 461 KSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQYKEIYRMVEEMSRELRRIGH 520

Query: 430 TKRSDQK----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
              + +     + E+     + HSEKLAIAF ++ T PGT++ V+KNLR+C DCH  IK 
Sbjct: 521 IAATSEVLLDLDEEDKEGALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCSDCHAAIKC 580

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +S++ +R+ +VRD +RFH FK G CSCKD+W
Sbjct: 581 ISQVYNREIVVRDRSRFHRFKDGSCSCKDFW 611



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 123/248 (49%), Gaps = 14/248 (5%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF+   + + +T  ++A+I GYV   L S+AV LF  M+  GV  + VT++ +L    D 
Sbjct: 195 VFERMPRESAVT--WSAMIGGYVRAGLSSDAVVLFRGMQVSGVRPDEVTVIGVLAAAADL 252

Query: 61  GYL----WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
           G L    W+G        + G+    ++ N L+    KCG VD    +F+ + E+ +++W
Sbjct: 253 GALELTRWVGRFVE----REGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMEERTVVSW 308

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
            ++I   A  G     + ++ EMK++GV PD V F+GVL++C+H G    G      ++ 
Sbjct: 309 TSVIDALAMEGRGKEAVGVFEEMKAVGVLPDDVAFIGVLTACSHAGMVDEGRGYFDSMKT 368

Query: 177 NGFGSNPFLNN--ALINMYARCGNLKKARAIFDGMPRK-TVVSWTAIIGGYGIHGHGEVA 233
             +G  P + +   +++M+ R G +++       MP K   + W  ++     HG  E+ 
Sbjct: 369 E-YGIEPKIEHYGCMVDMFGRAGMVEQGLEFVRAMPMKPNPIIWRTLVAACRAHGRLELG 427

Query: 234 VQLFDEML 241
             +   +L
Sbjct: 428 ESITRNLL 435


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/541 (39%), Positives = 313/541 (57%), Gaps = 42/541 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA++SGY  N L  E + LF +M   G+E +  T + ++  C   G   L       
Sbjct: 226 VSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRT 285

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSV--------------------------------DY 100
             +  + L+  V   L+ MY KCGS+                                D 
Sbjct: 286 LHQKQIQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDS 345

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM-KSLGVCPDAVTFVGVLSSCA 159
            R+LF+ +P + ++TWN+MI+GYAQNG +   +EL++EM  +  + PD VT V V+S+C 
Sbjct: 346 ARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACG 405

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
           HLGA  +G  V + +  N    +   +NA+I MY+RCG+++ A+ +F  M  + VVS+  
Sbjct: 406 HLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNT 465

Query: 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279
           +I G+  HGHG  A+ L   M + GI PD   F+ VL+ACSHAGL ++G + F  +K+  
Sbjct: 466 LISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD-- 523

Query: 280 GLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELA 339
              P  +HY CMVDLLGR G+L +A   +E M +EP   V+G+LL A +IHK VEL ELA
Sbjct: 524 ---PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELA 580

Query: 340 FGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHL 399
             K+ +LEP N+G ++LLSNIY+ A     + R+R  M++  +KK  G+S+VE  G++H 
Sbjct: 581 ANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHK 640

Query: 400 FMVGDRNHHQTVEIYRMLDKLENLVQE--HDGTKRSDQKNSEEHLNDTEV--HSEKLAIA 455
           F+V DR+H ++ +IY++L +L   ++E  +   K    ++ EE   +  V  HSEKLAI 
Sbjct: 641 FIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAIC 700

Query: 456 FGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDY 515
           + ++ +  G  I V+KNLR+C DCH  IK++SK+  R  IVRD  RFH F  G CSCKDY
Sbjct: 701 YALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDY 760

Query: 516 W 516
           W
Sbjct: 761 W 761



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 154/344 (44%), Gaps = 73/344 (21%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE          +NA++SGY       +A  LF  M E+ V                 
Sbjct: 152 VFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERNV----------------- 194

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
              W  M                     +T Y K   ++  R+ FD +PE+ +++WNAM+
Sbjct: 195 -ITWTAM---------------------VTGYAKVKDLEAARRYFDCMPERSVVSWNAML 232

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH-----LGAHSVGLEVEQQIQ 175
           SGYAQNGLA  VL L+ EM + G+ PD  T+V V+S+C+      L A  V    ++QIQ
Sbjct: 233 SGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQ 292

Query: 176 ANGFGSNPFLN---------------------------NALINMYARCGNLKKARAIFDG 208
            N F     L+                           NA+I+ Y R GNL  AR +F+ 
Sbjct: 293 LNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNT 352

Query: 209 MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS-GIRPDGTAFVSVLSACSHAGLTDK 267
           MP + VV+W ++I GY  +G   +A++LF EM+ +  + PD    VSV+SAC H G  + 
Sbjct: 353 MPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALEL 412

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           G  +      +  ++     +  M+ +  R G + +A  + + M
Sbjct: 413 G-NWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEM 455



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 129/295 (43%), Gaps = 47/295 (15%)

Query: 66  GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP--EKGLITWNAMISGY 123
           G+  H   +K G   D  V N ++ MY + G + + RK+FD++P  E+ +  WNAM+SGY
Sbjct: 114 GIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGY 173

Query: 124 AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP 183
            +         L+  M    V    +T+                                
Sbjct: 174 WKWESEGQAQWLFDVMPERNV----ITWT------------------------------- 198

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
               A++  YA+  +L+ AR  FD MP ++VVSW A++ GY  +G  E  ++LFDEM+ +
Sbjct: 199 ----AMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNA 254

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
           GI PD T +V+V+SACS  G           +  K  +Q      T ++D+  + G +  
Sbjct: 255 GIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQ-IQLNCFVRTALLDMYAKCGSIGA 313

Query: 304 ALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG-----KVIKLEPMNTGY 353
           A  + + +    +   W A++ A     N++ A   F       V+    M  GY
Sbjct: 314 ARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGY 368



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 91/239 (38%), Gaps = 62/239 (25%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF E   +T   V YN LISG+  +    EA++L   M+E G+E + VT + +L  C   
Sbjct: 451 VFQE--MATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHA 508

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L                                   + GRK+F+ + +  +  +  M+
Sbjct: 509 GLL-----------------------------------EEGRKVFESIKDPAIDHYACMV 533

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
               + G    + +  R M+ + + P A  +  +L++            + +Q++     
Sbjct: 534 DLLGRVG---ELEDAKRTMERMPMEPHAGVYGSLLNAS----------RIHKQVELGELA 580

Query: 181 SNPFL----NNA-----LINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIH 227
           +N       +N+     L N+YA  G  K    I + M +   K    W+ +  G  +H
Sbjct: 581 ANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLH 639


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/458 (41%), Positives = 289/458 (63%), Gaps = 7/458 (1%)

Query: 66  GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG--LITWNAMISGY 123
           G C H    K G      V N L+ +Y  CG  +   K+FD++P +G  L++WN+M++ +
Sbjct: 135 GECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSF 194

Query: 124 AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP 183
           A NG    VL ++ EM  +   PD  T V VL++CA  GA ++G  V   ++  G   N 
Sbjct: 195 AANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENS 254

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPR-KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
            ++NALI++YA+CG++  AR IF+ M   +TVVSWT++I G   +G G+ A++LF  M +
Sbjct: 255 HVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMER 314

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
             + P     V VL ACSH GL D G  YF  MK  YG+ P  EH  CMVDLLGRAG++ 
Sbjct: 315 EKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVE 374

Query: 303 EALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362
           EA + I +M +EP+  VW  LLG+C +HK +EL ++A+ ++++L+P ++G YVLLSN+Y+
Sbjct: 375 EAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNLYA 434

Query: 363 EARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLEN 422
                  +  +R  M + R++K+PG+S VEL+  V+ F++GDR+H ++ +IY ML ++  
Sbjct: 435 AVGMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAE 494

Query: 423 LVQEHDGTKRSDQ--KNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGD 478
            ++      R+     + EE   +T +  HSE+LAIAF ++ + PG  I ++KNLR+CGD
Sbjct: 495 RLRREGYIPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGD 554

Query: 479 CHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           CH+   L+SK+ DR+ IVRD +RFHHF+ G CSCKDYW
Sbjct: 555 CHVAFNLISKVYDREIIVRDRSRFHHFQGGACSCKDYW 592



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 125/246 (50%), Gaps = 5/246 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE        V +N++++ +  N   +E +++F +M       +  T++ +L  C + 
Sbjct: 173 VFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEF 232

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP-EKGLITWNAM 119
           G L LG   H    K GL  +  V N L+ +Y KCGSV+  R++F+++   + +++W ++
Sbjct: 233 GALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSL 292

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I G A NG     LEL+  M+   + P  +T VGVL +C+H G    G     +++ + +
Sbjct: 293 IVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKED-Y 351

Query: 180 GSNPFLNN--ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQL 236
           G +P + +   ++++  R G +++A      MP     V W  ++G   +H   E+    
Sbjct: 352 GISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVA 411

Query: 237 FDEMLK 242
           ++ +++
Sbjct: 412 WERLVE 417



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 101/212 (47%), Gaps = 14/212 (6%)

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           LEL+R   +L   PD  T+  ++ +CA L A   G  +  +   NGF +  F+ N+L+++
Sbjct: 104 LELHRRRLAL---PDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHL 160

Query: 193 YARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           Y  CG  + A  +FD MP   + +VSW +++  +  +G     + +F EML     PDG 
Sbjct: 161 YGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGF 220

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
             VSVL+AC+  G    G    +    K GL         ++DL  + G +N+A  + E 
Sbjct: 221 TIVSVLTACAEFGALALG-RRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEE 279

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGK 342
           M +      W +L+        V LA   FGK
Sbjct: 280 MGLGRTVVSWTSLI--------VGLAANGFGK 303


>gi|15228954|ref|NP_191214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180975|sp|Q9LXY5.1|PP284_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g56550
 gi|7594533|emb|CAB88058.1| putative protein [Arabidopsis thaliana]
 gi|91806586|gb|ABE66020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646013|gb|AEE79534.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 581

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/449 (41%), Positives = 281/449 (62%), Gaps = 7/449 (1%)

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           ++ G   D  V   L+  Y   GSV+   K+FD++P + L++WN MI  ++  GL    L
Sbjct: 134 IRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHNQAL 193

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
            +Y+ M + GVC D+ T V +LSSCAH+ A ++G+ + +        S  F++NALI+MY
Sbjct: 194 SMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSNALIDMY 253

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
           A+CG+L+ A  +F+GM ++ V++W ++I GYG+HGHG  A+  F +M+ SG+RP+   F+
Sbjct: 254 AKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAITFL 313

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
            +L  CSH GL  +G+E+F  M +++ L P  +HY CMVDL GRAGQL  +LE+I +   
Sbjct: 314 GLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLENSLEMIYASSC 373

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
             D  +W  LLG+CKIH+N+EL E+A  K+++LE  N G YVL+++IYS A +      +
Sbjct: 374 HEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAANDAQAFASM 433

Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS 433
           R ++R   L+  PG+S++E+  +VH F+V D+ H ++  IY  L ++ N      G K  
Sbjct: 434 RKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEVINRAIL-AGYKPE 492

Query: 434 DQKNSEEHLND------TEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           D   +   L+D         HSEKLAIA+G++ T+ GT + + KNLR+C DCH F K VS
Sbjct: 493 DSNRTAPTLSDRCLGSADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTKYVS 552

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K  +R+ IVRD  RFHHF  G CSC DYW
Sbjct: 553 KAFNREIIVRDRVRFHHFADGICSCNDYW 581



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 128/241 (53%), Gaps = 9/241 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE        V +N +I  +    L ++A+S++ +M  +GV  +S T++ LL  C   
Sbjct: 164 VFDE--MPVRDLVSWNVMICCFSHVGLHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHV 221

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L +G+  H I      +    V N L+ MY KCGS++    +F+ + ++ ++TWN+MI
Sbjct: 222 SALNMGVMLHRIACDIRCESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMI 281

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GY  +G     +  +R+M + GV P+A+TF+G+L  C+H G    G+E   +I ++ F 
Sbjct: 282 IGYGVHGHGVEAISFFRKMVASGVRPNAITFLGLLLGCSHQGLVKEGVE-HFEIMSSQFH 340

Query: 181 SNPFLNN--ALINMYARCGNLKKA-RAIFDGMPRKTVVSWTAIIGGYGIHGH---GEVAV 234
             P + +   ++++Y R G L+ +   I+     +  V W  ++G   IH +   GEVA+
Sbjct: 341 LTPNVKHYGCMVDLYGRAGQLENSLEMIYASSCHEDPVLWRTLLGSCKIHRNLELGEVAM 400

Query: 235 Q 235
           +
Sbjct: 401 K 401


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/513 (39%), Positives = 302/513 (58%), Gaps = 14/513 (2%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
            + ++ +IS Y   +   +A  LF +M    V  N  ++  +L  C +   L LG   H  
Sbjct: 699  ILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNH 758

Query: 73   CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             +K G + +  VGN L+ +Y KC  ++   ++F  + +   ++WN +I GY+++G     
Sbjct: 759  AIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAA 818

Query: 133  LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            L ++REM++  V    VT+  VL +CA   + +   +V   I+ + F S+  ++N+LI+ 
Sbjct: 819  LSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDS 878

Query: 193  YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
            YA+CG ++ AR IF+ +    +VSW AII GY +HG   +A +LFD M K+ I+ +   F
Sbjct: 879  YAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITF 938

Query: 253  VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            V++LS C   GL  +GL  F  M+  +G++P  EHYTC+V LLGRAG+LN+AL  I  + 
Sbjct: 939  VALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLNDALNFIGDIP 998

Query: 313  VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
              P   VW ALL +C +HKNVEL   +  KV+++EP +   YVLLSN+YS A +LD +  
Sbjct: 999  SAPSAMVWRALLSSCIVHKNVELGRFSAEKVLEIEPQDETTYVLLSNMYSAAGSLDQVAF 1058

Query: 373  VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
             R  MR   ++K+PG S+VE+KG VH F VG  +H     I  ML+ L NL    +G   
Sbjct: 1059 FRKSMRNIGVRKEPGLSWVEIKGEVHAFSVGSEDHPCMRVINAMLEWL-NLKAIREGYV- 1116

Query: 433  SDQKNSEEHLNDTE---------VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFI 483
                +++E L+D E         VHSE+LA+A+G++ T PG  I +MKNLR C DCH   
Sbjct: 1117 ---PDTDEVLHDLEEEQKVRMLWVHSERLALAYGLVMTPPGHPIRIMKNLRSCLDCHAIF 1173

Query: 484  KLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            K++SKIV ++ IVRD  RFHHF+ G CSC DYW
Sbjct: 1174 KVISKIVKQEIIVRDINRFHHFEEGTCSCGDYW 1206



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 152/335 (45%), Gaps = 4/335 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V + A++S Y  N      + +F KMR    ++N   +  +L   V    + LG   H 
Sbjct: 597 AVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHA 656

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             VK   D +  V   L+ MY KCG+++  R  F+ V    +I W+ MIS YAQ      
Sbjct: 657 CSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQ 716

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
             EL+  M    V P+  +   VL +CA++    +G ++       G  S  F+ NALI+
Sbjct: 717 AFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALID 776

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +YA+C +++ +  IF  +     VSW  II GY   G GE A+ +F EM  + +      
Sbjct: 777 LYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVT 836

Query: 252 FVSVLSAC-SHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
           + SVL AC S A +   G    + +  K            ++D   + G + +A E+ E+
Sbjct: 837 YSSVLRACASTASINHVG--QVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFET 894

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345
            L E D   W A++    +H    +A+  F  + K
Sbjct: 895 -LKECDLVSWNAIISGYAVHGQAAMAQELFDMMSK 928



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 143/299 (47%), Gaps = 1/299 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  L+ G+ L     EA +LF ++R +G E+N   +  +L + V    L L    H  
Sbjct: 497 VSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHAC 556

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K G D +  VG+ L+  Y  CG V   R++FD +  K  + W AM+S Y++N    + 
Sbjct: 557 ACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENT 616

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+++ +M+      +      VL +   L +  +G  +        + +   +  AL++M
Sbjct: 617 LQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDM 676

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CGN++ AR  F+ +    V+ W+ +I  Y      E A +LF  M++S + P+  + 
Sbjct: 677 YAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSL 736

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            SVL AC++  L D G +  +    K G +        ++DL  +   +  +LE+  S+
Sbjct: 737 SSVLQACANMPLLDLG-KQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSL 794



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 128/286 (44%), Gaps = 10/286 (3%)

Query: 45  INSVTMLCLLPICVDPGYLWLGMCCHCICVKFG--LDLDFSVGNCLMTMYVKCGSVDYGR 102
           ++S     LL  CV  G    G   H   V+ G    LD    N L+ MY K G      
Sbjct: 426 VDSYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAH 485

Query: 103 KLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162
           ++FD +PE+ ++++  ++ G+A  G       L++ ++  G   +      VL     + 
Sbjct: 486 RVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMD 545

Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIG 222
              +   V       G   N F+ +ALI+ Y+ CG +  AR +FDG+  K  V+WTA++ 
Sbjct: 546 TLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVS 605

Query: 223 GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSA--CSHAGLTDKGLEYFYGMKNKYG 280
            Y  +   E  +Q+F +M  +  + +  A  SVL A  C  + +  KG+ +   +K  Y 
Sbjct: 606 CYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGI-HACSVKTLYD 664

Query: 281 LQPGPEH-YTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
            +    H Y  ++D+  + G + +A  L   M+   D  +W  ++ 
Sbjct: 665 TE---RHVYGALLDMYAKCGNIEDA-RLAFEMVTNDDVILWSLMIS 706


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/541 (38%), Positives = 304/541 (56%), Gaps = 37/541 (6%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +ISG+  +    +AV +F  M  +G++ +  ++  +LP   D     +G+  HC 
Sbjct: 176 VSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCY 235

Query: 73  CVKFGLDLDFSVGNCLMTMYVKC-------------------------------GSVDYG 101
            +K GL  D  V + L+ MY KC                               G VD  
Sbjct: 236 VIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNA 295

Query: 102 RKLFDQVP--EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
            ++F Q    +  +++W +MI+  +QNG     LEL+REM+  GV P++VT   +L +C 
Sbjct: 296 LEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACG 355

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
           ++ A   G         NG  ++ ++ +ALI+MYA+CG +  +R  FD MP + +VSW +
Sbjct: 356 NIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNS 415

Query: 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279
           ++ GY +HG    A+ +F+ M + G +PD  +F  VLSAC+  GLT++G  YF  M   +
Sbjct: 416 LMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNH 475

Query: 280 GLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELA 339
           G++   EHY+CMV LLGR+G+L EA  +I+ M  EPD  VWGALL +C++H  V+L E+A
Sbjct: 476 GVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIA 535

Query: 340 FGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHL 399
             +V +LEP N G Y+LLSNIY+       +  VR MMR R LKK+PGYS++E+K +VH+
Sbjct: 536 AKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHM 595

Query: 400 FMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEV----HSEKLAIA 455
            + GD +H Q  +I   L KL   +++      +D    +    D E     HSEKLA+ 
Sbjct: 596 LLAGDSSHPQMPQIIEKLAKLTVEMKKSGYVPHTDFVLQDVEEQDKEQILCGHSEKLAVV 655

Query: 456 FGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDY 515
            G++NT PG  + V+KNLRIC DCH  IK +S    R+  VRD  RFH FK G CSC DY
Sbjct: 656 LGLLNTKPGFPLQVIKNLRICRDCHAVIKFISDFEKREIFVRDTNRFHQFKGGVCSCGDY 715

Query: 516 W 516
           W
Sbjct: 716 W 716



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 136/305 (44%), Gaps = 38/305 (12%)

Query: 32  VSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTM 91
           + +F  M  QG+  +S  +  ++  C     L  G   HC  +  GL LD  V + L+ M
Sbjct: 59  IRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHM 118

Query: 92  YVKCGSVDYGRKLFDQVPEKGLIT-----------------------------------W 116
           YV+   +   R +FD++P+ G++T                                   W
Sbjct: 119 YVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSW 178

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
           N MISG+ ++G     + +++ M   G+ PD  +   VL +   L    +G+++   +  
Sbjct: 179 NGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIK 238

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
            G G + F+ +ALI+MY +C    +   +F+ M    V +  A++ G   +G  + A+++
Sbjct: 239 QGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEV 298

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           F +    G+  +  ++ S++++CS  G   + LE F  M+ + G++P      C++   G
Sbjct: 299 FKQF--KGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIE-GVKPNSVTIPCLLPACG 355

Query: 297 RAGQL 301
               L
Sbjct: 356 NIAAL 360



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 92/209 (44%), Gaps = 38/209 (18%)

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
           HV+ ++  M + G+ PD+     V+ +CA L A   G ++      +G G +  + ++L+
Sbjct: 57  HVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLL 116

Query: 191 NMYARCGNLKKARAIFDGMPRKTV-----------------------------------V 215
           +MY +  +LK AR +FD +P+  V                                   V
Sbjct: 117 HMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLV 176

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYG 274
           SW  +I G+   G    AV +F  M   G++PDGT+  SVL A     +   G++ + Y 
Sbjct: 177 SWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYV 236

Query: 275 MKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
           +K   GL P     + ++D+ G+    +E
Sbjct: 237 IKQ--GLGPDKFVVSALIDMYGKCACASE 263


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/553 (37%), Positives = 307/553 (55%), Gaps = 39/553 (7%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+ ++     V ++ +I     N     A+ L  +M    V  + V M+ ++ +  D 
Sbjct: 181 VFDKMMERD--VVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADT 238

Query: 61  GYLWLGMCCHCICVKFGLD--LDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
             + +G   H   ++   +  +       L+ MY KCG +   R+LF+ + +K +++W A
Sbjct: 239 ANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTA 298

Query: 119 MISG-------------------------------YAQNGLATHVLELYREMKSLGVCPD 147
           MI+G                               YAQ         L+ +M++ GV P 
Sbjct: 299 MIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPT 358

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
            VT V +LS CA  GA  +G  V   I       +  LN AL++MYA+CG++  A  +F 
Sbjct: 359 KVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFI 418

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
               + +  W AII G+ +HG+GE A+ +F EM + G++P+   F+ +L ACSHAGL  +
Sbjct: 419 EAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTE 478

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           G + F  M + +GL P  EHY CMVDLLGRAG L+EA E+I+SM ++P+  VWGAL+ AC
Sbjct: 479 GKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAAC 538

Query: 328 KIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPG 387
           ++HKN +L ELA  +++++EP N GY VL+SNIY+ A        VR  M+   +KK+PG
Sbjct: 539 RLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPG 598

Query: 388 YSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----HDGTKRSDQKNSEEHLN 443
           +S +E+ G VH F++GD++H Q   I  ML ++   + E     D +      + EE   
Sbjct: 599 HSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKET 658

Query: 444 DTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFH 503
               HSEKLA+AFG+I+T+P T I ++KNLR+C DCH   KL+SKI  R  IVRD  RFH
Sbjct: 659 ALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFH 718

Query: 504 HFKSGFCSCKDYW 516
           HF+ G+CSC DYW
Sbjct: 719 HFREGYCSCGDYW 731



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 170/350 (48%), Gaps = 37/350 (10%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N +I+ Y   +    A++++ ++R+   E+++     +L  C    +  LG   H   +
Sbjct: 92  WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K GLD D  VGN LM MY +C  V+Y R +FD++ E+ +++W+ MI   ++N      LE
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALE 211

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL--NNALINM 192
           L REM  + V P  V  V +++  A      +G  +   +  N    +  +    AL++M
Sbjct: 212 LIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDM 271

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGG----------------------------- 223
           YA+CG+L  AR +F+G+ +KTVVSWTA+I G                             
Sbjct: 272 YAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAML 331

Query: 224 --YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281
             Y      + A  LFD+M  SG+RP     VS+LS C+ AG  D G ++ +   +K  +
Sbjct: 332 SAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLG-KWVHSYIDKERV 390

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALEL-IESMLVEPDGAVWGALLGACKIH 330
           +      T +VD+  + G +N A  L IE+  +  D  +W A++    +H
Sbjct: 391 EVDCILNTALVDMYAKCGDINAAGRLFIEA--ISRDICMWNAIITGFAMH 438


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/544 (38%), Positives = 305/544 (56%), Gaps = 40/544 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGV-EINSVTMLCLLPICVDPGYLWLGMCCHC 71
           + +N L+SG   +    +AV     M  +G+   ++  + C L    D G + +G   H 
Sbjct: 122 ITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHG 181

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP---------------------- 109
             VK G   D  V   L+ MY KCG      ++FD+                        
Sbjct: 182 YAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCE 241

Query: 110 -------------EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS 156
                        E  +++W ++++   QNG     +E +REM++ G  P++VT   VL 
Sbjct: 242 ALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLP 301

Query: 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS 216
           + A++ A   G          GF  + ++++AL++MYA+CG +K AR IFD M  + VVS
Sbjct: 302 AFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVS 361

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
           W A+IGGY ++G    AV +F  MLK   +PD   F  +L+AC+ AGLT++G  YF  M 
Sbjct: 362 WNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMH 421

Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELA 336
           N+YG+ P  EHY CMV LLGRAG+L+EA +LI  M  EPD  +WG+LLG+C++H NV+LA
Sbjct: 422 NEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLA 481

Query: 337 ELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGR 396
           E+A  K+  LEP N G YVLLSNIY+  +  D + RVR MM++  LKK+ G S++E+K +
Sbjct: 482 EVAAEKLFHLEPENAGNYVLLSNIYASKKMWDRVNRVREMMKDVGLKKEKGCSWIEIKNK 541

Query: 397 VHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD--QKNSEEHLNDT--EVHSEKL 452
           VH+ + GD +H     I   +++L   +++      +D    + EE   D    VHSEKL
Sbjct: 542 VHMLLAGDDSHPMMTAIIEKINQLNIQMRKLGFVPSTDFVLHDVEEQEKDDILAVHSEKL 601

Query: 453 AIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSC 512
           A+A G+I+TSPGT + V+KNLRICGDCH  +K +S    R+  VRD  RFHHF  G CSC
Sbjct: 602 AVALGLISTSPGTTLRVIKNLRICGDCHEAMKFISSFEGREISVRDTNRFHHFSGGKCSC 661

Query: 513 KDYW 516
            D+W
Sbjct: 662 GDFW 665



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 110/278 (39%), Gaps = 40/278 (14%)

Query: 63  LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP------------- 109
           L L    H +    GL  D  V + L+  Y++ G+    R LFD +P             
Sbjct: 33  LPLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALV 92

Query: 110 -------------------------EKGLITWNAMISGYAQNGLATHVLELYREMKSLGV 144
                                    E  +ITWN ++SG  ++G A   +     M   G+
Sbjct: 93  AAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGL 152

Query: 145 C-PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
             PDA      LS+   +G  SVG ++       G  ++  +  ALI+MY +CG   +  
Sbjct: 153 LRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVV 212

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG 263
            +FD      V S  A+I G   +     A++LF E +  G+  +  ++ S+++ C   G
Sbjct: 213 RVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNG 272

Query: 264 LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301
              + +E+F  M+ + G +P      C++        L
Sbjct: 273 KDLEAVEFFREMQAQ-GTEPNSVTIPCVLPAFANVAAL 309



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 88/218 (40%), Gaps = 43/218 (19%)

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
           H   L+  ++ +   PD         SC  L    +   +    + +G   +PF+ ++L+
Sbjct: 3   HSSSLHHFLRHVSFPPDPHLLPTAFKSCPTL---PLARALHAVAEVSGLARDPFVASSLL 59

Query: 191 NMYARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG---- 244
           + Y R G    ARA+FDGMPR  +TVV W+A++  +   G  E A +L +EM + G    
Sbjct: 60  HAYLRLGTTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEP 119

Query: 245 ---------------------------------IRPDGTAFVSVLSACSHAGLTDKGLEY 271
                                            +RPD T     LSA    GL   G + 
Sbjct: 120 NVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVG-QQ 178

Query: 272 FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
            +G   K G +      T ++D+ G+ GQ  E + + +
Sbjct: 179 LHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFD 216


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/526 (39%), Positives = 306/526 (58%), Gaps = 12/526 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE+ + T     +NAL     +     E + L+ +M   G   +  T   +L  CV  
Sbjct: 135 VFDETRERT--IYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVS 192

Query: 61  GY----LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
                 L  G   H   ++ G + +  V   L+ +Y K GSV Y   +F  +P K  ++W
Sbjct: 193 ELSVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSW 252

Query: 117 NAMISGYAQNGLATHVLELYREM--KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
           +AMI+ +A+N +    LEL++ M  ++    P++VT V +L +CA L A   G  +   I
Sbjct: 253 SAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYI 312

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
                 S   + NALI MY RCG +   + +FD M ++ VVSW ++I  YG+HG G+ A+
Sbjct: 313 LRRQLDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAI 372

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
           Q+F+ M+  G+ P   +F++VL ACSHAGL ++G   F  M +KY + PG EHY CMVDL
Sbjct: 373 QIFENMIHQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDL 432

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           LGRA +L EA++LIE M  EP   VWG+LLG+C+IH NVELAE A   + +LEP N G Y
Sbjct: 433 LGRANRLGEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTVLFELEPRNAGNY 492

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
           VLL++IY+EA+       V  ++  R L+K PG S++E+K +V+ F+  D ++ Q  EI+
Sbjct: 493 VLLADIYAEAKLWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIH 552

Query: 415 RMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVM 470
            +L KL N ++      +++      + EE       HSEKLA+AFG+INT+ G  I + 
Sbjct: 553 ALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSEKLAVAFGLINTAKGETIRIR 612

Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KNLR+C DCH   K +SK  +R+ +VRD  RFHHF+ G CSC DYW
Sbjct: 613 KNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFRDGVCSCGDYW 658



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 134/285 (47%), Gaps = 10/285 (3%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           L+  C     L  G+  H   V  G D D  +   L+ MY + GS+D   K+FD+  E+ 
Sbjct: 84  LIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRALKVFDETRERT 143

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSV-----G 167
           +  WNA+    A  G    +L+LY +M  +G   D  T+  VL +C  +   SV     G
Sbjct: 144 IYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACV-VSELSVCPLRKG 202

Query: 168 LEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH 227
            E+   I  +G+ +N  +   L+++YA+ G++  A ++F  MP K  VSW+A+I  +  +
Sbjct: 203 KEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKN 262

Query: 228 GHGEVAVQLFDEMLKSGIR--PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
                A++LF  M+       P+    V++L AC+     ++G +  +G   +  L    
Sbjct: 263 EMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQG-KLIHGYILRRQLDSIL 321

Query: 286 EHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
                ++ + GR G++     + ++M  + D   W +L+    +H
Sbjct: 322 PVLNALITMYGRCGEVLMGQRVFDNM-KKRDVVSWNSLISIYGMH 365



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 100/210 (47%), Gaps = 7/210 (3%)

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P   TF  ++ SCA   + S GL+V + +  +GF  +PFL   LINMY   G++ +A  +
Sbjct: 76  PTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRALKV 135

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           FD    +T+  W A+     + GHG+  + L+ +M   G   D   +  VL AC  + L+
Sbjct: 136 FDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELS 195

Query: 266 ----DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWG 321
                KG E  +    ++G +      T ++D+  + G ++ A  +  +M  + +   W 
Sbjct: 196 VCPLRKGKE-IHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTK-NFVSWS 253

Query: 322 ALLGACKIHKNVELAELAFGKVIKLEPMNT 351
           A++ AC     + +  L   +++  E  N+
Sbjct: 254 AMI-ACFAKNEMPMKALELFQLMMFEACNS 282


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/516 (39%), Positives = 307/516 (59%), Gaps = 20/516 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEI-NSVTMLCLLPICVD 59
           VFD+       T  +N LI  Y  +S   +++ +F +M  Q  +  +  T   L+    +
Sbjct: 91  VFDQIPHPNLYT--WNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASE 148

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              L+ G   H + +K  L  D  + N L+  Y KCG +  G ++F   P + +++WN+M
Sbjct: 149 LEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSM 208

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I+ + Q G     LEL++EM++  V P+ +T VGVLS+CA       G  V   I+ N  
Sbjct: 209 ITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRI 268

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYG------------IH 227
             +  L+NA+++MY +CG+++ A+ +FD MP K +VSWT ++ GY             +H
Sbjct: 269 XESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMH 328

Query: 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH 287
           GHG+ A+ LF +M +  ++P+   F ++L ACSH GL ++G  +F  M+  YG+ PG +H
Sbjct: 329 GHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKH 388

Query: 288 YTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE 347
           Y CMVD+LGRAG L EA+ELIE M + P  +VWGALLGAC IH+NV LAE A  ++I+LE
Sbjct: 389 YACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELE 448

Query: 348 PMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNH 407
           P N G YVLLSNIY++A   D +  +R +MR+  LKK+PG S +E+ G VH F+VGD +H
Sbjct: 449 PGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSH 508

Query: 408 HQTVEIYRMLDKLENLVQEHDGTKRSD---QKNSEEHLNDTE--VHSEKLAIAFGIINTS 462
               +IY  LD++   ++            Q   EE + +    +HSEKLAIAFG+I+T 
Sbjct: 509 PSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTG 568

Query: 463 PGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRD 498
               I ++KNLR+CGDCH   KLVSK+ DR+ ++RD
Sbjct: 569 QSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRD 604



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 123/264 (46%), Gaps = 6/264 (2%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYV--KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
           H   ++ GL  D    + L+T        S+DY +++FDQ+P   L TWN +I  YA + 
Sbjct: 55  HAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSS 114

Query: 128 LATHVLELY-REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
                L ++ R +      PD  TF  ++ + + L     G      +     GS+ F+ 
Sbjct: 115 NPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFIL 174

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           N+LI+ YA+CG L     +F   PR+ VVSW ++I  +   G  E A++LF EM    ++
Sbjct: 175 NSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVK 234

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           P+G   V VLSAC+     + G  + +    +  +         M+D+  + G + +A  
Sbjct: 235 PNGITMVGVLSACAKKSDFEFG-RWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKR 293

Query: 307 LIESMLVEPDGAVWGALL-GACKI 329
           L + M  E D   W  +L G  KI
Sbjct: 294 LFDKM-PEKDIVSWTTMLVGYAKI 316


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/523 (38%), Positives = 307/523 (58%), Gaps = 12/523 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +F E I+  +  V YN +I+GY  N   S  + LF +M+    +  ++    LL +    
Sbjct: 297 LFHEMIERDN--VSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAGSV 354

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
            ++ +G   H   V  GL  +  VGN L+ MY KCG +D  +  F    +K  ++W AMI
Sbjct: 355 PHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMI 414

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +G  QNG     L+L+  M+  G+ PD  TF   + + ++L    +G ++   +  +G  
Sbjct: 415 TGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRSGHM 474

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S+ F  +AL++MY +CG L +A   FD MP +  +SW A+I  Y  +G  + A+++F+ M
Sbjct: 475 SSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKMFEGM 534

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           L  G +PD   F+SVLSACSH GL ++ ++YF  M+ +YG+ P  EHY+C++D LGR G+
Sbjct: 535 LCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLGRVGR 594

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
            ++  E++  M  E D  +W ++L +C+ H N +LA +A  K+  +   +   YV+LSNI
Sbjct: 595 FDKVQEMLGEMPFEDDPIIWSSILHSCRTHGNQDLARVAAEKLFSMGSTDATPYVILSNI 654

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           +++A   +    V+ +MR+R L+K+ GYS+VE+K +V+ F   D+ +    EI    D+L
Sbjct: 655 FAKAGKWEDAAGVKKIMRDRGLRKETGYSWVEVKHKVYSFSSNDQTNPMITEIK---DEL 711

Query: 421 ENLVQEHD--GTKRS-----DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
           E L +E D  G K        Q + +  L   + HSE+LAIAF +INT PGT I VMKNL
Sbjct: 712 ERLYKEMDKQGYKPDTSCTLQQVDDDIKLESLKYHSERLAIAFALINTPPGTPIRVMKNL 771

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
             C DCH  IK++SKIV+R  IVRD++RFHHFK GFCSC DYW
Sbjct: 772 SACVDCHSAIKMMSKIVNRDIIVRDSSRFHHFKDGFCSCGDYW 814



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/318 (32%), Positives = 164/318 (51%), Gaps = 9/318 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V YNA++ G       +EA+ LF  MR +G+     T   +L +    G L LG   H 
Sbjct: 206 SVTYNAMMMGCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHG 265

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           +  +     +  V N L+  Y KC  +D  +KLF ++ E+  +++N MI+GYA N  A+ 
Sbjct: 266 LVAR-ATSSNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASI 324

Query: 132 VLELYREMKSLGVCPDAVTFVGVLS---SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
           VL L+REM+SL     A+ +  +LS   S  H+G   +G ++  Q+   G  S   + NA
Sbjct: 325 VLRLFREMQSLSFDRQALPYASLLSVAGSVPHIG---IGKQIHAQLVLLGLSSEDLVGNA 381

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           LI+MY++CG L  A+  F     KT VSWTA+I G   +G  E A+QLF  M ++G+ PD
Sbjct: 382 LIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPD 441

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
              F S + A S+  +   G +  +    + G        + ++D+  + G L+EAL+  
Sbjct: 442 RATFSSTIKASSNLAMIGLGRQ-LHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTF 500

Query: 309 ESMLVEPDGAVWGALLGA 326
           + M  E +   W A++ A
Sbjct: 501 DEM-PERNSISWNAVISA 517



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 164/383 (42%), Gaps = 56/383 (14%)

Query: 28  VSEAVSLFGKMREQGVEINSVTM---LCLLPICVDPGYLWLGMCCHCICVKFGL-DLDFS 83
            S+AVSLF  M  +GV  + VT+   L L P         +    H   +K GL   +  
Sbjct: 117 ASDAVSLFRDMLREGVAPDRVTVATVLNLPPASGGTAAAIIIASLHPFALKLGLLHSNVV 176

Query: 84  VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG 143
           V N L+  Y K G +   R++F ++P +  +T+NAM+ G ++ G     L+L+  M+  G
Sbjct: 177 VCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRKG 236

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
           +     TF  VL+    +G   +G +V   + A    SN F+NN+L++ Y++C  L + +
Sbjct: 237 LAATRFTFSTVLTVATGVGDLCLGRQVHGLV-ARATSSNVFVNNSLLDFYSKCDCLDEMK 295

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC---- 259
            +F  M  +  VS+  +I GY  +    + ++LF EM           + S+LS      
Sbjct: 296 KLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAGSVP 355

Query: 260 -------------------------------SHAGLTDKGLEYFYGMKNKYGLQPGPEHY 288
                                          S  G+ D     F    +K G+      +
Sbjct: 356 HIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVS-----W 410

Query: 289 TCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345
           T M+    + GQ  EAL+L   M    + PD A + + + A     +  LA +  G+ + 
Sbjct: 411 TAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKA-----SSNLAMIGLGRQLH 465

Query: 346 LEPMNTGYYVLLSNIYSEARNLD 368
              + +G+   +S+++S +  LD
Sbjct: 466 SYLIRSGH---MSSVFSGSALLD 485



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 8/186 (4%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPE--KGLITWNAMISGYAQ--NGLATHVLELYREMKS 141
           N +++ Y + G +     LF   P   +  +TW  MI  +A      A+  + L+R+M  
Sbjct: 70  NRMLSGYSRSGQLSAAHHLFLSSPPHLRDAVTWTVMIGAFASAPGARASDAVSLFRDMLR 129

Query: 142 LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ----QIQANGFGSNPFLNNALINMYARCG 197
            GV PD VT   VL+     G  +  + +       ++     SN  + N L++ Y + G
Sbjct: 130 EGVAPDRVTVATVLNLPPASGGTAAAIIIASLHPFALKLGLLHSNVVVCNTLLDAYCKHG 189

Query: 198 NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257
            L  AR +F  MP +  V++ A++ G    G    A+ LF  M + G+      F +VL+
Sbjct: 190 LLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLT 249

Query: 258 ACSHAG 263
             +  G
Sbjct: 250 VATGVG 255


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/509 (40%), Positives = 293/509 (57%), Gaps = 42/509 (8%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +NA+I+G  L  L  +AV L  +M+E+G+  NS T++ +LP C              
Sbjct: 175 VVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTC-------------- 220

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                          CL+          Y RK+FD +  +  ++W+AMI GY  +     
Sbjct: 221 --------------QCLL----------YARKIFDVMGVRNEVSWSAMIGGYVASDCMKE 256

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L+++R M+  G+ PD  T +GVL +C+HL A   G      +   GF ++  + NALI+
Sbjct: 257 ALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALID 316

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY++CG +  AR +F+ M R  +VSW A+I GYGIHG G  A+ LF ++L  G++PD   
Sbjct: 317 MYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDIT 376

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+ +LS+CSH+GL  +G  +F  M   + + P  EH  CMVD+LGRAG ++EA   I +M
Sbjct: 377 FICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNM 436

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
             EPD  +W ALL AC+IHKN+EL E    K+  L P +TG +VLLSNIYS A   D   
Sbjct: 437 PFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAA 496

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL----ENLVQEH 427
            +R+  ++  LKK PG S++E+ G VH F+ GD++H Q  +I R L++L    + L  + 
Sbjct: 497 HIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQA 556

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           + +        EE       HSEKLAIAFGI+N   G  I+V KNLR+CGDCH  IK ++
Sbjct: 557 ECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMT 616

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            I  R+  VRDA RFHHFK+G C+C D+W
Sbjct: 617 LITKREITVRDANRFHHFKNGTCNCGDFW 645



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 140/280 (50%), Gaps = 11/280 (3%)

Query: 51  LCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE 110
           L LL  C+    L      H   +K   + D SV + L  +Y+ C  V   R+LFD++P 
Sbjct: 12  LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPN 71

Query: 111 KGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEV 170
             +I WN +I  YA NG     ++LY  M  LGV P+  T+  VL +C+ L A   G+E+
Sbjct: 72  PSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEI 131

Query: 171 EQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHG 230
               +  G  S+ F+  AL++ YA+CG L +A+ +F  M  + VV+W A+I G  ++G  
Sbjct: 132 HSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLC 191

Query: 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC 290
           + AVQL  +M + GI P+ +  V VL  C    L  + +    G++N+         ++ 
Sbjct: 192 DDAVQLIMQMQEEGICPNSSTIVGVLPTC-QCLLYARKIFDVMGVRNEVS-------WSA 243

Query: 291 MVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGAC 327
           M+     +  + EAL++   M    ++PD      +L AC
Sbjct: 244 MIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPAC 283



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 2/181 (1%)

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
            ++ +L +C    + +   ++ Q    N   ++  + + L  +Y  C  +  AR +FD +
Sbjct: 10  NYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEI 69

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
           P  +V+ W  II  Y  +G  + A+ L+  ML  G+RP+   +  VL ACS     + G+
Sbjct: 70  PNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGV 129

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
           E  +     +GL+      T +VD   + G L EA  L  SM    D   W A++  C +
Sbjct: 130 E-IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSM-SHRDVVAWNAMIAGCSL 187

Query: 330 H 330
           +
Sbjct: 188 Y 188



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 22/146 (15%)

Query: 10  HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPIC-----VDPGYLW 64
           H  V +NA+I GY ++ L  EA+ LF  +   G++ + +T +CLL  C     V  G LW
Sbjct: 337 HDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLW 396

Query: 65  LGMCCHCICVKFGLDLDFSVGN------CLMTMYVKCGSVDYGRKLFDQVP-EKGLITWN 117
                        +  DFS+        C++ +  + G +D        +P E  +  W+
Sbjct: 397 FD----------AMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWS 446

Query: 118 AMISGYAQNGLATHVLELYREMKSLG 143
           A++S    +       E+ ++++SLG
Sbjct: 447 ALLSACRIHKNIELGEEVSKKIQSLG 472


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/520 (39%), Positives = 298/520 (57%), Gaps = 26/520 (5%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD   K +   V +  +I+G + +  + E    F +M E+ +  N +T+L L+  C   
Sbjct: 248 LFDRLSKRS--VVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFV 305

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L LG   H   ++ G  +  ++   L+ MY KCG V Y R LF+ V +K +  W+ +I
Sbjct: 306 GTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLI 365

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           S YA       V  L+ EM +  V P+ VT V +LS CA  GA  +G      I  +G  
Sbjct: 366 SAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGLE 425

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            +  L  ALINMYA+CG++  AR++F+   ++ +  W  ++ G+ +HG G+ A++LF EM
Sbjct: 426 VDVILETALINMYAKCGDVTIARSLFNEAMQRDIRMWNTMMAGFSMHGCGKEALELFSEM 485

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
              G+ P+   FVS+  ACSH+GL                     EHY C+VDLLGRAG 
Sbjct: 486 ESHGVEPNDITFVSIFHACSHSGLM--------------------EHYGCLVDLLGRAGH 525

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L+EA  +IE+M + P+  +WGALL ACK+HKN+ L E+A  K+++L+P N GY VL SNI
Sbjct: 526 LDEAHNIIENMPMRPNTIIWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNI 585

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+ A+  + +  VR  M    +KK+PG S++E+ G VH F  GD+   QT ++Y M+ ++
Sbjct: 586 YASAKRWNDVTSVREAMSHSGMKKEPGLSWIEVSGSVHHFKSGDKACTQTTKVYEMVTEM 645

Query: 421 ENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
              ++E   T  +       + EE  +    HSEKLA AFG+I+T+PGT I ++KNLRIC
Sbjct: 646 CIKLRESGYTPNTAAVLLNIDEEEKESALSYHSEKLATAFGLISTAPGTPIRIVKNLRIC 705

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DCH   KL+SKI  R  IVRD  RFHHF  G+CSC  YW
Sbjct: 706 DDCHAATKLLSKIYGRTIIVRDRNRFHHFSEGYCSCMGYW 745



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 167/332 (50%), Gaps = 6/332 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+  +     V +  ++  YV +    EA+ L  +M+  GV+++ V ++ L+ +  + 
Sbjct: 145 VFDQMPERD--VVSWTTMLGCYVRSKAFGEALRLVREMQFVGVKLSGVALISLIAVFGNL 202

Query: 61  GYLWLGMCCHCICVKFGLD--LDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
             +  G   H   V+   D  ++ S+   L+ MY K G +   ++LFD++ ++ +++W  
Sbjct: 203 LDMKSGRAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTV 262

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           MI+G  ++       + +  M    + P+ +T + +++ C  +G   +G      +  NG
Sbjct: 263 MIAGCIRSCRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNG 322

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
           FG +  L  ALI+MY +CG +  ARA+F+G+ +K V  W+ +I  Y      +    LF 
Sbjct: 323 FGMSLALVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFV 382

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
           EML + ++P+    VS+LS C+ AG  D G ++ +   N++GL+      T ++++  + 
Sbjct: 383 EMLNNDVKPNNVTMVSLLSLCAEAGALDLG-KWTHAYINRHGLEVDVILETALINMYAKC 441

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           G +  A  L    + + D  +W  ++    +H
Sbjct: 442 GDVTIARSLFNEAM-QRDIRMWNTMMAGFSMH 472



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 171/365 (46%), Gaps = 20/365 (5%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           YN LIS Y  N L   + + +  MR      +++  +  LL  C       LG   H   
Sbjct: 55  YNLLISSYTNNHLPQASFNCYLHMRSNDAAALDNFILPSLLKACAQASSGDLGRELHGFA 114

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
            K G   D  V N LM MY KCG +   R +FDQ+PE+ +++W  M+  Y ++      L
Sbjct: 115 QKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRSKAFGEAL 174

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF---LNNALI 190
            L REM+ +GV    V  + +++   +L     G  V   I  N  G       +  ALI
Sbjct: 175 RLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRN-VGDEKMEVSMTTALI 233

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MY + G L  A+ +FD + +++VVSWT +I G       +   + F+ ML+  + P+  
Sbjct: 234 DMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEI 293

Query: 251 AFVSVLSACSHAGLTDKGLEYF--YGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
             +S+++ C   G  D G ++F  Y ++N +G+       T ++D+ G+ GQ+  A  L 
Sbjct: 294 TLLSLITECGFVGTLDLG-KWFHAYLLRNGFGMSLAL--VTALIDMYGKCGQVGYARALF 350

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKL-----EPMNTGYYVLLSNIYSE 363
              + + D  +W  L+ A   + +V   +  F   +++     +P N     LLS + +E
Sbjct: 351 NG-VKKKDVKIWSVLISA---YAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLS-LCAE 405

Query: 364 ARNLD 368
           A  LD
Sbjct: 406 AGALD 410


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/509 (38%), Positives = 299/509 (58%), Gaps = 6/509 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V YN +I+ Y     V E++ LF +++    +  +     +L I      L +G   H  
Sbjct: 308 VSYNVIITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTMLSIAASSLDLQMGRQLHAQ 367

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            V    D DF V N L+ MY KCG  +   ++F ++  +  + W AMIS   Q GL  + 
Sbjct: 368 VVVSMADPDFRVSNSLVDMYAKCGKFEEADRIFLRLSSRSTVPWTAMISANVQRGLHENG 427

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+L+ EM+   V  D  TF  VL + A+L +  +G ++   +  +GF  N +   AL++M
Sbjct: 428 LKLFYEMRRANVSADQATFACVLKASANLASILLGKQLHSCVIRSGF-MNVYSGCALLDM 486

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA C ++K A   F+ M  + VV+W A++  Y  +G G+  ++ F+EM+ SG +PD  +F
Sbjct: 487 YANCASIKDAIKTFEEMSERNVVTWNALLSAYAQNGDGKGTLKSFEEMIMSGYQPDSVSF 546

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + +L+ACSH  L ++GL+YF  M   Y L P  EHYT MVD L R+G+ +EA +L+  M 
Sbjct: 547 LCILTACSHCRLVEEGLKYFNDMSGVYNLAPKREHYTAMVDALCRSGRFDEAEKLMGQMP 606

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPM-NTGYYVLLSNIYSEARNLDGIM 371
            EPD  VW ++L +C+IHKN  LA  A G++  ++ + +   YV +SNI++EA   D ++
Sbjct: 607 FEPDEIVWTSVLNSCRIHKNYALARKAAGQLFNMKVLRDAAPYVTMSNIFAEAGQWDSVV 666

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH---- 427
           +V+  MR+R ++K P YS+VE+K +VH+F   D  H Q +EI R ++ L   +++     
Sbjct: 667 KVKKAMRDRGVRKLPAYSWVEIKHKVHVFSANDDKHPQQLEILRKIEMLAEQMEKEGYDP 726

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           D +      + E  ++  + HSE+LAIAF +INT  G+ I+VMKNLR C DCH  IK++S
Sbjct: 727 DISCAHQNVDKESKIDSLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIKVIS 786

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KIV R+  VRD+ RFHHF+ G CSC DYW
Sbjct: 787 KIVGREITVRDSNRFHHFRDGSCSCGDYW 815



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 149/326 (45%), Gaps = 4/326 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD++ + T   V +  +I  Y  ++   +A  LF +M   G + + VT + LL  C D 
Sbjct: 96  IFDDTDERT--VVAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVTYITLLTGCNDL 153

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
                    H   VK G  L+  V N L+  Y K G +D  R+LF ++     +++N MI
Sbjct: 154 EVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMI 213

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GYA NGL    +EL+ EM++LG  P   TF  V+S+   L   + G ++   +    F 
Sbjct: 214 TGYANNGLNEEAIELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFI 273

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            N F+ NA ++ Y++   + + R +F+ MP    VS+  II  Y   G  + ++ LF E+
Sbjct: 274 RNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQEL 333

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
             +        F ++LS  + +     G +  +         P       +VD+  + G+
Sbjct: 334 QFTTFDRKNFPFPTMLSIAASSLDLQMGRQ-LHAQVVVSMADPDFRVSNSLVDMYAKCGK 392

Query: 301 LNEALELIESMLVEPDGAVWGALLGA 326
             EA + I   L       W A++ A
Sbjct: 393 FEEA-DRIFLRLSSRSTVPWTAMISA 417



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 133/282 (47%), Gaps = 4/282 (1%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           S+  TV + A+IS  V   L    + LF +MR   V  +  T  C+L    +   + LG 
Sbjct: 404 SSRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFACVLKASANLASILLGK 463

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
             H   ++ G  ++   G  L+ MY  C S+    K F+++ E+ ++TWNA++S YAQNG
Sbjct: 464 QLHSCVIRSGF-MNVYSGCALLDMYANCASIKDAIKTFEEMSERNVVTWNALLSAYAQNG 522

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ-ANGFGSNPFLN 186
                L+ + EM   G  PD+V+F+ +L++C+H      GL+    +             
Sbjct: 523 DGKGTLKSFEEMIMSGYQPDSVSFLCILTACSHCRLVEEGLKYFNDMSGVYNLAPKREHY 582

Query: 187 NALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
            A+++   R G   +A  +   MP     + WT+++    IH +  +A +   ++    +
Sbjct: 583 TAMVDALCRSGRFDEAEKLMGQMPFEPDEIVWTSVLNSCRIHKNYALARKAAGQLFNMKV 642

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH 287
             D   +V++ +  + AG  D  ++    M+++ G++  P +
Sbjct: 643 LRDAAPYVTMSNIFAEAGQWDSVVKVKKAMRDR-GVRKLPAY 683



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 124/265 (46%), Gaps = 10/265 (3%)

Query: 82  FSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKS 141
           FS+ + +++ YVK G++   R++FD   E+ ++ W  MI  Y+++       +L+ EM  
Sbjct: 75  FSI-DIIISGYVKSGNLTVARRIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHR 133

Query: 142 LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKK 201
            G  PD VT++ +L+ C  L       +   QI   G   N  + N L++ Y + G L  
Sbjct: 134 SGSQPDYVTYITLLTGCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDS 193

Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261
           AR +F  M     VS+  +I GY  +G  E A++LF EM   G +P    F +V+SA   
Sbjct: 194 ARRLFLEMCGWDSVSFNVMITGYANNGLNEEAIELFVEMQNLGFKPSDFTFAAVISAS-- 251

Query: 262 AGLTDKGL-EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320
            GL D    +  +G   K             +D   +   +NE  +L   M  E DG  +
Sbjct: 252 VGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEM-PELDGVSY 310

Query: 321 GALLGAC----KIHKNVEL-AELAF 340
             ++ A     K+ ++++L  EL F
Sbjct: 311 NVIITAYAWVGKVKESIDLFQELQF 335



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 47/79 (59%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           N F  + +I+ Y + GNL  AR IFD    +TVV+WT +IG Y        A +LF EM 
Sbjct: 73  NSFSIDIIISGYVKSGNLTVARRIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMH 132

Query: 242 KSGIRPDGTAFVSVLSACS 260
           +SG +PD   ++++L+ C+
Sbjct: 133 RSGSQPDYVTYITLLTGCN 151


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/491 (41%), Positives = 286/491 (58%), Gaps = 6/491 (1%)

Query: 32  VSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTM 91
           +  +  M    V  +  +   +L  C   G   LG   HC  +K G + D  +   L+  
Sbjct: 15  LGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDF 74

Query: 92  YVKCGSVDYGRKLFDQVPEKGL--ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
           Y K G V+  R LFD + E+    +TWN MIS Y Q G     + ++++M+S  V P  V
Sbjct: 75  YAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEV 134

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
           T V +LS+CAHLGA  +G  +   I+      +  L NALI+MY +CG L+ A  +F G+
Sbjct: 135 TMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGL 194

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
            RK +  W +II G G++G GE A+  F  M K GI+PDG  FV +LS CSH+GL   G 
Sbjct: 195 SRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQ 254

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
            YF  M   YGL+PG EHY CMVDLLGRAG L EALELI +M ++P+  V G+LL AC+I
Sbjct: 255 RYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQI 314

Query: 330 HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYS 389
           HK+ +L E    ++++L+P + G YV LSN+Y+     D +   R +M +R + K PG S
Sbjct: 315 HKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCS 374

Query: 390 YVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLV--QEHDGTKRSDQKNSEEHLNDTEV 447
            +E+   VH F+ GD +H Q  +I   LD++   +  Q H     +   + EE   +  +
Sbjct: 375 SIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEGAI 434

Query: 448 --HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHF 505
             HSE++A+AFG+++T PG  I V+KNLR C DCH  +KL+S    R+ IVRD  RFHHF
Sbjct: 435 RYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHF 494

Query: 506 KSGFCSCKDYW 516
           ++G CSC DYW
Sbjct: 495 RNGSCSCNDYW 505



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 122/245 (49%), Gaps = 4/245 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD   +    +V +N +IS YV       A+S+F +M+ + V+   VTM+ LL  C   
Sbjct: 87  LFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHL 146

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L +G   H       L +D  +GN L+ MY KCG+++    +F  +  K +  WN++I
Sbjct: 147 GALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSII 206

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            G   NG     +  +  M+  G+ PD VTFVG+LS C+H G  S G     ++    +G
Sbjct: 207 VGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGV-YG 265

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMPRK-TVVSWTAIIGGYGIHGHGEVAVQLF 237
             P + +   ++++  R G LK+A  +   MP K   +   +++    IH   ++  Q+ 
Sbjct: 266 LEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVT 325

Query: 238 DEMLK 242
            ++L+
Sbjct: 326 QQLLE 330



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 101/224 (45%), Gaps = 4/224 (1%)

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           MI    ++G+    L  Y  M    V P   +F  +L SCA  G   +G     QI   G
Sbjct: 1   MIRVSLESGVCPDFLGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMG 60

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRK--TVVSWTAIIGGYGIHGHGEVAVQL 236
           F  +  L   L++ YA+ G +++AR +FD M  +    V+W  +I  Y   G    A+ +
Sbjct: 61  FEYDMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISM 120

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           F +M    ++P     VS+LSAC+H G  D G E+ +G      L+        ++D+  
Sbjct: 121 FQQMQSENVKPTEVTMVSLLSACAHLGALDMG-EWIHGYIRTKRLKIDVVLGNALIDMYC 179

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           + G L  A+++    L   +   W +++    ++   E A  AF
Sbjct: 180 KCGALEAAIDVFHG-LSRKNIFCWNSIIVGLGMNGRGEEAIAAF 222


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/529 (38%), Positives = 315/529 (59%), Gaps = 24/529 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD  ++ +   V +N +I  Y  N + SEA+ +F +MR +G + +  T+  +L  C   
Sbjct: 118 VFDGMLERS--LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSAC--- 172

Query: 61  GYLWLGMCC---HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWN 117
           G     + C   HC+ VK  +DL+  VG  L+ +Y KCG +    ++F+ + +K  +TW+
Sbjct: 173 GVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWS 232

Query: 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
           +M++GY QN      L LYR  + + +  +  T   V+ +C++L A   G ++   I  +
Sbjct: 233 SMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKS 292

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
           GFGSN F+ ++ ++MYA+CG+L+++  IF  +  K +  W  II G+  H   +  + LF
Sbjct: 293 GFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILF 352

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
           ++M + G+ P+   F S+LS C H GL ++G  +F  M+  YGL P   HY+CMVD+LGR
Sbjct: 353 EKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGR 412

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
           AG L+EA ELI+S+  +P  ++WG+LL +C+++KN+ELAE+A  K+ +LEP N G +VLL
Sbjct: 413 AGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLL 472

Query: 358 SNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML 417
           SNIY+  +  + I + R ++R+  +KK  G S++++K +VH F VG+  H +  EI   L
Sbjct: 473 SNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTL 532

Query: 418 DKLENLVQEHDGTKRSDQKNSEEH-LNDTEV---------HSEKLAIAFGIINTSPGTEI 467
           D   NLV +    ++   K S EH L+D E+         HSEKLA+ FG++     + +
Sbjct: 533 D---NLVIKF---RKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPV 586

Query: 468 VVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +MKNLRIC DCH F+K  S    R  IVRD  RFHHF  G CSC D+W
Sbjct: 587 RIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 158/331 (47%), Gaps = 15/331 (4%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           +L +C   G +     CH   ++  L+ D ++ N L+  Y KCG V+  R++FD + E+ 
Sbjct: 67  ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
           L++WN MI  Y +N + +  L+++ EM++ G      T   VLS+C   G +   LE ++
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSAC---GVNCDALECKK 183

Query: 173 ---QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGH 229
                       N ++  AL+++YA+CG +K A  +F+ M  K+ V+W++++ GY  + +
Sbjct: 184 LHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKN 243

Query: 230 GEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYT 289
            E A+ L+    +  +  +     SV+ ACS+     +G +  + +  K G        +
Sbjct: 244 YEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG-KQMHAVICKSGFGSNVFVAS 302

Query: 290 CMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LE 347
             VD+  + G L E+  +I S + E +  +W  ++     H   +   + F K+ +  + 
Sbjct: 303 SAVDMYAKCGSLRESY-IIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMH 361

Query: 348 PMNTGYYVLLS-----NIYSEARNLDGIMRV 373
           P    +  LLS      +  E R    +MR 
Sbjct: 362 PNEVTFSSLLSVCGHTGLVEEGRRFFKLMRT 392


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/509 (38%), Positives = 304/509 (59%), Gaps = 6/509 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +    +GY  N    +A+ L  +++ +G+++++  +  +L  C     L      H  
Sbjct: 328 ISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGY 387

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ GL  D  + N ++ +Y +CG +DY  ++F+ +  K +++W +MIS Y  NGLA   
Sbjct: 388 TIRGGLS-DPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKA 446

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           LE++  MK  G+ PD VT V +LS+   L     G E+   I   GF     ++N L++M
Sbjct: 447 LEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDM 506

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YARCG+++ A  IF     + ++ WTA+I  YG+HG+GE AV+LF  M    I PD   F
Sbjct: 507 YARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITF 566

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +++L ACSH+GL ++G  +   MK +Y L+P PEHYTC+VDLLGR   L EA ++++SM 
Sbjct: 567 LALLYACSHSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQ 626

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            EP   VW ALLGAC+IH N E+ E+A  K+++L+  N G YVL+SN+++       +  
Sbjct: 627 NEPTPEVWCALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEE 686

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VRM M+   L K+PG S++E+  ++H F+  D+ H +  +IY+ L ++   ++   G   
Sbjct: 687 VRMRMKGSGLTKNPGCSWIEVGNKIHAFLSRDKLHPECDKIYQKLAQVTEKLKREGGYVA 746

Query: 433 SDQ-----KNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
             +        EE +     HSE+LAIA+G++ T+ GT I V KNLR+CGDCH F  LVS
Sbjct: 747 QTKFVLHNVGEEEKVQMLYGHSERLAIAYGLLATAEGTPIRVTKNLRVCGDCHSFCTLVS 806

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +  +R+ IVRDA+RFHHFK G CSC D+W
Sbjct: 807 RFFERELIVRDASRFHHFKDGMCSCGDFW 835



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 103/347 (29%), Positives = 174/347 (50%), Gaps = 4/347 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +N++IS Y  N + +EA+ LF +M + GV  N+ T    L  C D  ++ LGM  H 
Sbjct: 125 VVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHA 184

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K G  LD  V N L+ MYV+ G +     +F  +  K ++TWN+M++G+ QNGL + 
Sbjct: 185 AILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSE 244

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            LE + ++++  + PD V+ + ++ +   LG    G E+      NGF SN  + N LI+
Sbjct: 245 ALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLID 304

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+C  +      FD M  K ++SWT    GY  +     A++L  ++   G+  D T 
Sbjct: 305 MYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATM 364

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
             S+L AC       K ++  +G   + GL   P     ++D+ G  G ++ A+ + ES+
Sbjct: 365 IGSILLACRGLNCLGK-IKEIHGYTIRGGLSD-PVLQNTIIDVYGECGIIDYAVRIFESI 422

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
             + D   W +++ +C +H  +    L     +K   +   Y  L+S
Sbjct: 423 ECK-DVVSWTSMI-SCYVHNGLANKALEVFSSMKETGLEPDYVTLVS 467



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 150/281 (53%), Gaps = 4/281 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD+  + +  T  +NA++ GYV N     A+ ++ +MR  GV  +S T   LL  C   
Sbjct: 14  IFDKMSERSIFT--WNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLLKACGIV 71

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG-LITWNAM 119
             L+ G   H + +K+G D    V N L+ +Y KC  ++  RKLFD++  +  +++WN++
Sbjct: 72  EDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSI 131

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           IS Y+ NG+ T  L L+ EM   GV  +  TF   L +C       +G+++   I  +G 
Sbjct: 132 ISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGR 191

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             + ++ NAL+ MY R G + +A  IF  +  K +V+W +++ G+  +G    A++ F +
Sbjct: 192 VLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYD 251

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKY 279
           +  + ++PD  + +S++ A    G    G E + Y +KN +
Sbjct: 252 LQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGF 292



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 83/235 (35%), Positives = 122/235 (51%), Gaps = 3/235 (1%)

Query: 91  MYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVT 150
           MY KCGSV     +FD++ E+ + TWNAM+ GY  NG A   LE+YREM+ LGV  D+ T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM- 209
           F  +L +C  +     G E+       G  S  F+ N+L+ +YA+C ++  AR +FD M 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
            R  VVSW +II  Y  +G    A+ LF EMLK+G+  +   F + L AC  +     G+
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
           +  +    K G          +V +  R G++ EA  +I   L   D   W ++L
Sbjct: 181 Q-IHAAILKSGRVLDVYVANALVAMYVRFGKMPEA-AVIFGNLEGKDIVTWNSML 233


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/425 (45%), Positives = 274/425 (64%), Gaps = 14/425 (3%)

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160
           GR L   V + G  +W +MI+GY Q G A   + L+ +M+  GV  + VT V VL++CA 
Sbjct: 180 GRILHGVVEKVGFRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACAD 239

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           LGA  +G+ + +    +GF  N  ++N LI+MY +CG L++A  +F+ M  +TVVSW+A+
Sbjct: 240 LGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAM 299

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           IGG  +HG  E A++LF +M + GI P+G  F+ +L ACSH GL  +G  +F  M   YG
Sbjct: 300 IGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYG 359

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           + P  EHY CMVDLL RAG L+EA E I +M ++P+G VWGALLGAC++HKNVE+AE A 
Sbjct: 360 IIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAI 419

Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400
             +++L+P+N GYYV+LSNIY+EA   +   RVR  M++R++KK PG+S + + G VH F
Sbjct: 420 KHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEF 479

Query: 401 MVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTE---------VHSEK 451
           + G+ +H  T +I++   + E L++E     +    N+   L D E          HSEK
Sbjct: 480 VAGEESHPDTEQIFQ---RWEELLEEM--RLKGYVPNTSVVLLDIEEGEKVKFVSRHSEK 534

Query: 452 LAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCS 511
           LA+ FG++NT   T I +MKNLRIC DCH   KL+S IV+R+ +VRD  RFH F    CS
Sbjct: 535 LALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCS 594

Query: 512 CKDYW 516
           C+DYW
Sbjct: 595 CRDYW 599



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 81/246 (32%), Positives = 137/246 (55%), Gaps = 6/246 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           + ++I+GYV      EA+ LF KM E GV+ N VT++ +L  C D G L LGM  H    
Sbjct: 195 WTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSN 254

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           + G   +  + N L+ MYVKCG ++   K+F+++ E+ +++W+AMI G A +G A   L 
Sbjct: 255 RHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALR 314

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALINM 192
           L+ +M  +G+ P+ VTF+G+L +C+H+G  S G      +  + +G  P + +   ++++
Sbjct: 315 LFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRD-YGIIPQIEHYGCMVDL 373

Query: 193 YARCGNLKKARAIFDGMPRKTV-VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
            +R G L +A      MP K   V W A++G   +H + E+A +    +L+  + P    
Sbjct: 374 LSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLE--LDPLNDG 431

Query: 252 FVSVLS 257
           +  VLS
Sbjct: 432 YYVVLS 437


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/523 (37%), Positives = 316/523 (60%), Gaps = 18/523 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE   S    + +  +++GY  N+ V +A  +F  M E+  E++  +ML         
Sbjct: 194 IFDE--MSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEK-TEVSWTSMLM-------- 242

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVG-NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
           GY+  G       +   + +   +  N +++   + G +   R++FD + E+   +W  +
Sbjct: 243 GYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTV 302

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I  + +NG     L+L+  M+  GV P   T + +LS CA L +   G +V  Q+    F
Sbjct: 303 IKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQF 362

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             + ++ + L+ MY +CG L K++ IFD  P K ++ W +II GY  HG GE A+++F E
Sbjct: 363 DVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCE 422

Query: 240 MLKSG-IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
           M  SG  +P+   FV+ LSACS+AG+ ++GL+ +  M++ +G++P   HY CMVD+LGRA
Sbjct: 423 MPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRA 482

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           G+ NEA+E+I+SM VEPD AVWG+LLGAC+ H  +++AE    K+I++EP N+G Y+LLS
Sbjct: 483 GRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLS 542

Query: 359 NIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVE-IYRML 417
           N+Y+       +  +R +M+ R ++K PG S+ E++ +VH F  G  N H   E I ++L
Sbjct: 543 NMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKIL 602

Query: 418 DKLENLVQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
           D+L+ L++E     D +      + EE +N  + HSE+LA+A+ ++  S G  I VMKNL
Sbjct: 603 DELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNL 662

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           R+C DCH  IK++SK+ +R+ I+RDA RFHHF++G CSCKDYW
Sbjct: 663 RVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 113/250 (45%), Gaps = 20/250 (8%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCH-C 71
           V + AL+ GYV N  V  A SLF KM E+    N V+   +L      G+L  G     C
Sbjct: 111 VSWTALVKGYVHNGKVDVAESLFWKMPEK----NKVSWTVML-----IGFLQDGRIDDAC 161

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              +   D D      ++    K G VD  R++FD++ E+ +ITW  M++GY QN     
Sbjct: 162 KLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDD 221

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN-NALI 190
             +++  M         V++  +L      G      E+ + +        P +  NA+I
Sbjct: 222 ARKIFDVMPE----KTEVSWTSMLMGYVQNGRIEDAEELFEVMPV-----KPVIACNAMI 272

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +   + G + KAR +FD M  +   SW  +I  +  +G    A+ LF  M K G+RP   
Sbjct: 273 SGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFP 332

Query: 251 AFVSVLSACS 260
             +S+LS C+
Sbjct: 333 TLISILSVCA 342



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 129/277 (46%), Gaps = 27/277 (9%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L++ Y+K G +D  RK+FD +PE+ +++W A++ GY  NG       L+ +M      
Sbjct: 83  NGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKV 142

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
              V  +G L      G      ++ + I       +     ++I+   + G + +AR I
Sbjct: 143 SWTVMLIGFLQD----GRIDDACKLYEMIP----DKDNIARTSMIHGLCKEGRVDEAREI 194

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT--AFVSVLSACSHAG 263
           FD M  ++V++WT ++ GYG +   + A ++FD M      P+ T  ++ S+L      G
Sbjct: 195 FDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVM------PEKTEVSWTSMLMGYVQNG 248

Query: 264 LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGAL 323
             +   E F  M  K  +         M+  LG+ G++ +A  + +SM  E + A W  +
Sbjct: 249 RIEDAEELFEVMPVKPVIA-----CNAMISGLGQKGEIAKARRVFDSM-KERNDASWQTV 302

Query: 324 LGACKIHKN--VELAELAFGKVIKLEPMNTGYYVLLS 358
           +   KIH+    EL  L    +++ + +   +  L+S
Sbjct: 303 I---KIHERNGFELEALDLFILMQKQGVRPTFPTLIS 336



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 97/228 (42%), Gaps = 48/228 (21%)

Query: 84  VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG 143
             N  +T   + G +   RKLFD    K + +WN+M++GY  N +     +L+ EM    
Sbjct: 19  TANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEM---- 74

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
             PD                                  N    N L++ Y + G + +AR
Sbjct: 75  --PD---------------------------------RNIISWNGLVSGYMKNGEIDEAR 99

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG 263
            +FD MP + VVSWTA++ GY  +G  +VA  LF +M +     +  ++  +L      G
Sbjct: 100 KVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEK----NKVSWTVMLIGFLQDG 155

Query: 264 LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
             D   + +  + +K  +       T M+  L + G+++EA E+ + M
Sbjct: 156 RIDDACKLYEMIPDKDNIA-----RTSMIHGLCKEGRVDEAREIFDEM 198


>gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa]
 gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/521 (38%), Positives = 303/521 (58%), Gaps = 9/521 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +     V +N +ISG V      EA  LF  M E+  +  S T   ++      
Sbjct: 32  LFDEMPERN--LVSWNTIISGLVDVGDFMEAFRLFLNMWEEFSDAGSFTFAVMIRASAGL 89

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             + +G   H   +K G+  D  V   L+ MY KCGS++  R +F+++PEK  + WN +I
Sbjct: 90  ELISIGRQLHACTLKMGIGDDIFVSCALIDMYSKCGSIEDARFVFEEMPEKTTVGWNTII 149

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GYA +G +   L++Y EM+  GV  D  TF  ++  CA L +     +    +  +GFG
Sbjct: 150 AGYALHGYSEEALDMYYEMRDSGVKMDHFTFSMIVRICARLASVEHAKQAHAALIRHGFG 209

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S+   N AL++ Y++ G ++ AR +FD M  K V+SW A+IGGYG HG G  AV+LF++M
Sbjct: 210 SDIVANTALVDFYSKWGRIEDARHVFDKMASKNVISWNALIGGYGNHGRGSEAVELFEQM 269

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           ++  + P+   F++VLSACSH+GL+++G E F  M     ++P   HY CM++L+GR G 
Sbjct: 270 IQERMNPNHITFLAVLSACSHSGLSERGWEIFQSMGRDNRIKPRAMHYACMIELMGREGL 329

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L+EAL LI     +P   +W ALL AC++++N EL + A  K+  +EP     Y++L NI
Sbjct: 330 LDEALALIRGAPFKPTANMWAALLTACRVNENFELGKFAAEKLYGMEPDKLNNYIVLLNI 389

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+ A NL     V   ++ + L+  P  S++E+K R H+F+ GD  H Q  EIY+ +DKL
Sbjct: 390 YNSAGNLKEAADVVHTLKRKGLRMRPVCSWIEVKRRPHVFLSGDNRHPQRKEIYQKVDKL 449

Query: 421 ENLVQEH-----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRI 475
              + ++       T   D    EE +     HSEKLAIAFG+I+T     + +++  RI
Sbjct: 450 MLEISKYGYVPNQKTLLPDVDEQEERVR--LYHSEKLAIAFGLISTPYWAPLQIVQGHRI 507

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           CGDCH  IKL++++  R+ ++RDA RFHHFK G CSC+DYW
Sbjct: 508 CGDCHEAIKLIARVTGREIVIRDAGRFHHFKHGHCSCEDYW 548



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 162/325 (49%), Gaps = 8/325 (2%)

Query: 77  GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY 136
           G + D  + N ++ M+VKCG +   R+LFD++PE+ L++WN +ISG    G       L+
Sbjct: 5   GFEFDQYMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEAFRLF 64

Query: 137 REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196
             M        + TF  ++ + A L   S+G ++       G G + F++ ALI+MY++C
Sbjct: 65  LNMWEEFSDAGSFTFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDMYSKC 124

Query: 197 GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL 256
           G+++ AR +F+ MP KT V W  II GY +HG+ E A+ ++ EM  SG++ D   F  ++
Sbjct: 125 GSIEDARFVFEEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTFSMIV 184

Query: 257 SACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPD 316
             C+     +   +    +  ++G        T +VD   + G++ +A  + + M    +
Sbjct: 185 RICARLASVEHAKQAHAALI-RHGFGSDIVANTALVDFYSKWGRIEDARHVFDKM-ASKN 242

Query: 317 GAVWGALLGACKIH-KNVELAELAFGKVI--KLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
              W AL+G    H +  E  EL F ++I  ++ P +  +  +LS       +  G    
Sbjct: 243 VISWNALIGGYGNHGRGSEAVEL-FEQMIQERMNPNHITFLAVLSACSHSGLSERGWEIF 301

Query: 374 RMMMRERRLKKDPGY--SYVELKGR 396
           + M R+ R+K    +    +EL GR
Sbjct: 302 QSMGRDNRIKPRAMHYACMIELMGR 326



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 2/160 (1%)

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
           NGF  + ++ N ++ M+ +CG +  AR +FD MP + +VSW  II G    G    A +L
Sbjct: 4   NGFEFDQYMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEAFRL 63

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           F  M +         F  ++ A +   L   G +  +    K G+         ++D+  
Sbjct: 64  FLNMWEEFSDAGSFTFAVMIRASAGLELISIGRQ-LHACTLKMGIGDDIFVSCALIDMYS 122

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELA 336
           + G + +A  + E M  E     W  ++    +H   E A
Sbjct: 123 KCGSIEDARFVFEEM-PEKTTVGWNTIIAGYALHGYSEEA 161


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/537 (38%), Positives = 302/537 (56%), Gaps = 36/537 (6%)

Query: 16  NALISGYVLNSLVSEAVSLFGKMREQGVEINSV-TMLCLLPICVDPGYLWLGMCCHCICV 74
           N LI  Y  +    +AV  + +M E  V    V T   LL  C +   L LG   H    
Sbjct: 104 NTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSHVF 163

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL---ATH 131
           K G   + SV N L+ MY  CG ++    +FD+ PE    +WN MI GY + G+   A  
Sbjct: 164 KLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFKSARR 223

Query: 132 VLE----------------------------LYREMKSLGVCPDAVTFVGVLSSCAHLGA 163
           + E                            L+++M    + P+    V  LS+CAHLGA
Sbjct: 224 MFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGA 283

Query: 164 HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGG 223
              G  +E+ ++         L  ALI+MY++CG++++A  +F  M  K V++W+A+I G
Sbjct: 284 MEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMING 343

Query: 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP 283
             I+G G+ A+ LF +M   G++P+   F+ +L+ACSH+ L D+G  +F+ M + YGL+P
Sbjct: 344 LAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKP 403

Query: 284 GPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
              H+ CMVDL GRAG L++A  +I+SM  +P+ A+WGALL AC+IH + EL E    ++
Sbjct: 404 NAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKRL 463

Query: 344 IKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVG 403
           ++L+P + G YVLLSNIY+     D +  +R MMRER++ K PG S+++L   +H F+ G
Sbjct: 464 LELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLGDTIHEFVAG 523

Query: 404 DRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQK--NSEEHLNDTEV--HSEKLAIAFGII 459
           D +H Q   IY  L ++   ++       + Q   + +E   +T +  HSEKLAIAFG+I
Sbjct: 524 DSSHPQLEMIYAKLGEMSQELKAAGYKPDTGQVLLDMDEEEKETALCHHSEKLAIAFGLI 583

Query: 460 NTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            T PGT I + KNLR+C DCH   KL+SKI +R+ IVRD  RFHHF+ G CSC D+W
Sbjct: 584 KTDPGTTIRITKNLRVCADCHSATKLISKIYNREIIVRDRCRFHHFRDGSCSCMDFW 640



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 118/232 (50%), Gaps = 2/232 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++ +I+GYV  S   E + LF  M  + +E N   ++  L  C   G +  G      
Sbjct: 234 VSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQGQWIERY 293

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             +  + L   +G  L+ MY KCGSV+   ++F ++ EK ++ W+AMI+G A NG     
Sbjct: 294 MERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDA 353

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA-NGFGSNPFLNNALIN 191
           L L+ +M+  GV P+ VTF+G+L++C+H      G      + +  G   N   +  +++
Sbjct: 354 LNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVD 413

Query: 192 MYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFDEMLK 242
           +Y R G L +A+ +   MP K   + W A++    IHG  E+  Q+   +L+
Sbjct: 414 LYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLE 465



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 124/270 (45%), Gaps = 40/270 (14%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM-KSLGVCPDAVTFVGV 154
           GS+ Y R LF ++ +  +   N +I  YA +      +  Y EM +S  V PD  TF  +
Sbjct: 83  GSIPYARFLFYRIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLL 142

Query: 155 LSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA-------------------- 194
           L +C+ + +  +G  +   +   G+ S   ++N L+ MYA                    
Sbjct: 143 LKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDG 202

Query: 195 -----------RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
                      +CG  K AR +F+ MP + VVSW+ +I GY      +  + LF +M+  
Sbjct: 203 ASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGE 262

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKG--LEYFYGMKN-KYGLQPGPEHYTCMVDLLGRAGQ 300
            I P+ +  V+ LSAC+H G  ++G  +E +   KN +  ++ G    T ++D+  + G 
Sbjct: 263 KIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLG----TALIDMYSKCGS 318

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIH 330
           +  ALE+   M  E +   W A++    I+
Sbjct: 319 VERALEVFHKM-KEKNVLAWSAMINGLAIN 347


>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Brachypodium distachyon]
          Length = 647

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/512 (38%), Positives = 292/512 (57%), Gaps = 4/512 (0%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           T     +NA+++G     L  +++  F  MR +G+  +   +  +   C     +  G  
Sbjct: 136 TRNVATWNAMVAGLTNVGLDEDSLQFFLAMRREGMHPDEFGLGSVFRCCAGLLDVVSGRQ 195

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            H   V+ G+D D  VGN L  MY++CG +  G  +   +P   ++++N  I+G  QNG 
Sbjct: 196 VHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSLTIVSFNTTIAGRTQNGD 255

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
           +   LE +  M+ + V PD VTFV  +S C+ L A + G +V  Q+   G      +  +
Sbjct: 256 SEGALEYFSMMRGVEVAPDVVTFVSAISCCSDLAALAQGQQVHAQVIKAGVDKVVPVITS 315

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           L++MY+RCG L  +  ++DG     +   +A+I   G HG G  AV+LF +M+  G  P+
Sbjct: 316 LVHMYSRCGCLGDSERVYDGYCGLDLFLLSAMISACGFHGQGHKAVELFKQMMNGGAEPN 375

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
              F+++L ACSH+GL D+GLE+F  M   YG QP  +HY C+VDLLGR+G L+EA  LI
Sbjct: 376 EVTFLALLYACSHSGLKDEGLEFFELMTKTYGFQPSVKHYNCIVDLLGRSGCLDEAEALI 435

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
            SM V  DG +W  LL ACK  KN ++AE    +VI+ +P ++  YVLLSNI + ++   
Sbjct: 436 LSMPVRADGVIWKTLLSACKTQKNFDMAERIAERVIESDPRDSAPYVLLSNIRATSKRWG 495

Query: 369 GIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEI----YRMLDKLENLV 424
            +  VR +MRE+ ++K+PG S+VE KG+VH F  GD++H +  EI      M+ K+    
Sbjct: 496 DVTEVRKIMREKDIRKEPGVSWVEHKGQVHQFCTGDKSHPRQGEIDEYLKEMMGKIRQCG 555

Query: 425 QEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
              D T        EE       HSEKLAIAF  +N   G  I VMKNLR+C DCH+ IK
Sbjct: 556 YAPDMTMVFHDMEDEEKEVSLTHHSEKLAIAFAFLNLPEGVPIRVMKNLRVCDDCHVAIK 615

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           L+S++  R+ +VRD +RFHHF+ G CSC DYW
Sbjct: 616 LISQVTGREIVVRDVSRFHHFRDGRCSCGDYW 647



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 125/274 (45%), Gaps = 4/274 (1%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+   +K G +   R+LFD++P + + TWNAM++G    GL    L+ +  M+  G+ 
Sbjct: 112 NILIGGCIKNGDLGSARELFDKMPTRNVATWNAMVAGLTNVGLDEDSLQFFLAMRREGMH 171

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           PD      V   CA L     G +V   +  +G  S+  + N+L +MY RCG L +  A+
Sbjct: 172 PDEFGLGSVFRCCAGLLDVVSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAV 231

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
              +P  T+VS+   I G   +G  E A++ F  M    + PD   FVS +S CS     
Sbjct: 232 LRALPSLTIVSFNTTIAGRTQNGDSEGALEYFSMMRGVEVAPDVVTFVSAISCCSDLAAL 291

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
            +G +  +    K G+       T +V +  R G L ++ E +       D  +  A++ 
Sbjct: 292 AQG-QQVHAQVIKAGVDKVVPVITSLVHMYSRCGCLGDS-ERVYDGYCGLDLFLLSAMIS 349

Query: 326 ACKIHKNVELAELAFGKVIK--LEPMNTGYYVLL 357
           AC  H     A   F +++    EP    +  LL
Sbjct: 350 ACGFHGQGHKAVELFKQMMNGGAEPNEVTFLALL 383



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 57/102 (55%), Gaps = 5/102 (4%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           + F  N L+  YA  G+L  AR +F+G+ ++ V+SW  +IGG   +G    A +LFD+M 
Sbjct: 76  DRFTTNNLLLAYADLGDLPTARHLFEGISKRNVMSWNILIGGCIKNGDLGSARELFDKMP 135

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP 283
              +      + ++++  ++ GL +  L++F  M+ + G+ P
Sbjct: 136 TRNV----ATWNAMVAGLTNVGLDEDSLQFFLAMRRE-GMHP 172


>gi|356513527|ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Glycine max]
          Length = 579

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/511 (39%), Positives = 298/511 (58%), Gaps = 12/511 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           YN +I    ++    + + L+  MR +G+  + ++    +  C+   YL  G+  HC   
Sbjct: 72  YNTMIRACSMSDSPQKGLLLYRDMRRRGIAADPLSSSFAVKSCIRFLYLPGGVQVHCNIF 131

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K G   D  +   +M +Y  C       K+FD++P +  + WN MIS   +N      L 
Sbjct: 132 KDGHQWDTLLLTAVMDLYSLCQRGGDACKVFDEMPHRDTVAWNVMISCCIRNNRTRDALS 191

Query: 135 LYREMK--SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+  M+  S    PD VT + +L +CAHL A   G  +   I   G+     L N+LI+M
Sbjct: 192 LFDVMQGSSYKCEPDDVTCLLLLQACAHLNALEFGERIHGYIMERGYRDALNLCNSLISM 251

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y+RCG L KA  +F GM  K VVSW+A+I G  ++G+G  A++ F+EML+ G+ PD   F
Sbjct: 252 YSRCGCLDKAYEVFKGMGNKNVVSWSAMISGLAMNGYGREAIEAFEEMLRIGVLPDDQTF 311

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
             VLSACS++G+ D+G+ +F+ M  ++G+ P   HY CMVDLLGRAG L++A +LI SM+
Sbjct: 312 TGVLSACSYSGMVDEGMSFFHRMSREFGVTPNVHHYGCMVDLLGRAGLLDKAYQLIMSMV 371

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           V+PD  +W  LLGAC+IH +V L E   G +I+L+    G YVLL NIYS A + + +  
Sbjct: 372 VKPDSTMWRTLLGACRIHGHVTLGERVIGHLIELKAQEAGDYVLLLNIYSSAGHWEKVAE 431

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLEN-------LVQ 425
           VR +M+ + ++  PG S +ELKG VH F+V D +H +  EIY  LD++ +       +V+
Sbjct: 432 VRKLMKNKSIQTTPGCSTIELKGAVHEFVVDDVSHSRNREIYETLDEINHQLRIAGYVVE 491

Query: 426 EHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
                 + D K     L+    HSEKLA+AFG++ T PGT + V  NLR+C DCH F+KL
Sbjct: 492 LSSELHKMDDKEKGYVLSH---HSEKLAVAFGVLATPPGTILRVASNLRVCVDCHNFLKL 548

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            S + +R  ++RD  RFHHF+ G CSC DYW
Sbjct: 549 FSGVYNRDVVLRDHNRFHHFRGGRCSCSDYW 579



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 147/292 (50%), Gaps = 14/292 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQG--VEINSVTMLCLLPICV 58
           VFDE       TV +N +IS  + N+   +A+SLF  M+      E + VT L LL  C 
Sbjct: 161 VFDEMPHRD--TVAWNVMISCCIRNNRTRDALSLFDVMQGSSYKCEPDDVTCLLLLQACA 218

Query: 59  DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
               L  G   H   ++ G     ++ N L++MY +CG +D   ++F  +  K +++W+A
Sbjct: 219 HLNALEFGERIHGYIMERGYRDALNLCNSLISMYSRCGCLDKAYEVFKGMGNKNVVSWSA 278

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           MISG A NG     +E + EM  +GV PD  TF GVLS+C++ G    G+    ++ +  
Sbjct: 279 MISGLAMNGYGREAIEAFEEMLRIGVLPDDQTFTGVLSACSYSGMVDEGMSFFHRM-SRE 337

Query: 179 FGSNPFLNN--ALINMYARCGNLKKARAIFDGM---PRKTVVSWTAIIGGYGIHGHGEVA 233
           FG  P +++   ++++  R G L KA  +   M   P  T+  W  ++G   IHGH  + 
Sbjct: 338 FGVTPNVHHYGCMVDLLGRAGLLDKAYQLIMSMVVKPDSTM--WRTLLGACRIHGHVTLG 395

Query: 234 VQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
            ++   +++   +  G  +V +L+  S AG  +K  E    MKNK  +Q  P
Sbjct: 396 ERVIGHLIELKAQEAGD-YVLLLNIYSSAGHWEKVAEVRKLMKNK-SIQTTP 445



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 127/321 (39%), Gaps = 49/321 (15%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           Y ++ F Q+    +  +N MI   + +      L LYR+M+  G+  D ++    + SC 
Sbjct: 56  YSQRFFGQLSHPLVSHYNTMIRACSMSDSPQKGLLLYRDMRRRGIAADPLSSSFAVKSCI 115

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
                  G++V   I  +G   +  L  A++++Y+ C     A  +FD MP +  V+W  
Sbjct: 116 RFLYLPGGVQVHCNIFKDGHQWDTLLLTAVMDLYSLCQRGGDACKVFDEMPHRDTVAWNV 175

Query: 220 IIGGYGIHGHGEVAVQLFDEMLKSGIR--PDGTAFVSVLSACSH---------------- 261
           +I     +     A+ LFD M  S  +  PD    + +L AC+H                
Sbjct: 176 MISCCIRNNRTRDALSLFDVMQGSSYKCEPDDVTCLLLLQACAHLNALEFGERIHGYIME 235

Query: 262 -------------------AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
                               G  DK  E F GM NK  +      ++ M+  L   G   
Sbjct: 236 RGYRDALNLCNSLISMYSRCGCLDKAYEVFKGMGNKNVVS-----WSAMISGLAMNGYGR 290

Query: 303 EALELIESML---VEPDGAVWGALLGACKIHKNVELAELAFGKVIK---LEPMNTGYYVL 356
           EA+E  E ML   V PD   +  +L AC     V+     F ++ +   + P N  +Y  
Sbjct: 291 EAIEAFEEMLRIGVLPDDQTFTGVLSACSYSGMVDEGMSFFHRMSREFGVTP-NVHHYGC 349

Query: 357 LSNIYSEARNLDGIMRVRMMM 377
           + ++   A  LD   ++ M M
Sbjct: 350 MVDLLGRAGLLDKAYQLIMSM 370


>gi|224074129|ref|XP_002304264.1| predicted protein [Populus trichocarpa]
 gi|222841696|gb|EEE79243.1| predicted protein [Populus trichocarpa]
          Length = 499

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/503 (41%), Positives = 297/503 (59%), Gaps = 14/503 (2%)

Query: 24  LNSLVSEAVSLFGKMREQGVEINSVTM----LCLLPICVDPGYLWLGMCCHCICVKFGLD 79
           ++S  +E   ++ +MR++G+  + V++     C + IC   G    G   H   +  G  
Sbjct: 1   MSSSPTEGFFMYQEMRKKGLRADPVSLSFVIRCYIRICSLIG----GEQVHARILSDGHQ 56

Query: 80  LDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM 139
            D  +   LM +Y  C       K+FD++ ++  I WN +IS Y +N     VL ++  M
Sbjct: 57  SDSLLLTNLMDLYSLCDKGSEACKVFDEMRQRDTIAWNVLISCYMRNRRTRDVLVIFDGM 116

Query: 140 KS--LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG 197
            S  LG  PD VT + +L +CA+LGA   G +V   I   G+ +   L N+LI MY++ G
Sbjct: 117 LSGELGCEPDDVTCLLLLQACANLGALEFGEKVHGHIVERGYDNATNLCNSLIAMYSQFG 176

Query: 198 NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257
           NL KA  +F GM  K VV+W+AII G  ++G+G  A+  F+EMLK G+ PD   F  VLS
Sbjct: 177 NLDKAFGVFKGMHNKNVVTWSAIISGLAMNGYGREAIGAFEEMLKMGVLPDDLTFTGVLS 236

Query: 258 ACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDG 317
           ACS+ GL DKG+  F  M  ++G+ P   HY CMVDLLGRAGQL++A +LI SM V+PD 
Sbjct: 237 ACSNCGLVDKGMIIFARMSKEFGIVPNIHHYGCMVDLLGRAGQLHQAYQLIMSMRVKPDS 296

Query: 318 AVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMM 377
            +W  LLGAC+IH+NV L E     +I+L+    G YVLL N+YS   N   +  +R  M
Sbjct: 297 TIWRTLLGACRIHRNVILGEHVVEHLIELKAQEAGDYVLLFNLYSSVDNWKKVTELRKFM 356

Query: 378 RERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ----EHDGTKRS 433
           +E+ ++  P  S +ELKG+VH F+V D +H Q  EIY MLD++   ++      + T   
Sbjct: 357 KEKGIQTTPASSSIELKGKVHEFVVDDVSHPQKDEIYEMLDEISKQLKIAGYVAEITSEL 416

Query: 434 DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQ 493
              ++EE       HSEKLAIAFG++ T PGT I + KNLRIC DCH F K++S + +RQ
Sbjct: 417 PNLDAEEKRYVLSYHSEKLAIAFGVLATPPGTTIRIAKNLRICVDCHNFAKILSGVYNRQ 476

Query: 494 FIVRDATRFHHFKSGFCSCKDYW 516
            I+ D TRFHHF+ G CSC DYW
Sbjct: 477 VIITDHTRFHHFRGGHCSCNDYW 499



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 144/292 (49%), Gaps = 14/292 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMR--EQGVEINSVTMLCLLPICV 58
           VFDE  +    T+ +N LIS Y+ N    + + +F  M   E G E + VT L LL  C 
Sbjct: 81  VFDEMRQRD--TIAWNVLISCYMRNRRTRDVLVIFDGMLSGELGCEPDDVTCLLLLQACA 138

Query: 59  DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
           + G L  G   H   V+ G D   ++ N L+ MY + G++D    +F  +  K ++TW+A
Sbjct: 139 NLGALEFGEKVHGHIVERGYDNATNLCNSLIAMYSQFGNLDKAFGVFKGMHNKNVVTWSA 198

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           +ISG A NG     +  + EM  +GV PD +TF GVLS+C++ G    G+ +  ++ +  
Sbjct: 199 IISGLAMNGYGREAIGAFEEMLKMGVLPDDLTFTGVLSACSNCGLVDKGMIIFARM-SKE 257

Query: 179 FGSNPFLNN--ALINMYARCGNLKKARAIFDGM---PRKTVVSWTAIIGGYGIHGHGEVA 233
           FG  P +++   ++++  R G L +A  +   M   P  T+  W  ++G   IH +  + 
Sbjct: 258 FGIVPNIHHYGCMVDLLGRAGQLHQAYQLIMSMRVKPDSTI--WRTLLGACRIHRNVILG 315

Query: 234 VQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
             + + +++   +  G  +V + +  S      K  E    MK K G+Q  P
Sbjct: 316 EHVVEHLIELKAQEAGD-YVLLFNLYSSVDNWKKVTELRKFMKEK-GIQTTP 365


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/509 (37%), Positives = 298/509 (58%), Gaps = 5/509 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+I GY       EA+  F KM ++ V I+   +   L  C        G   H  
Sbjct: 173 VSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSS 232

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE-KGLITWNAMISGYAQNGLATH 131
            VK G + D  VGN L  MY K G ++    +F    E + ++++  +I GY +      
Sbjct: 233 VVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEK 292

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L ++ E++  G+ P+  TF  ++ +CA+  A   G ++  Q+    F  +PF+++ L++
Sbjct: 293 GLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVD 352

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY +CG L+ A   FD +   T ++W +++  +G HG G+ A++ F+ M+  G++P+   
Sbjct: 353 MYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAIT 412

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+S+L+ CSHAGL ++GL+YFY M   YG+ PG EHY+C++DLLGRAG+L EA E I  M
Sbjct: 413 FISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRM 472

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
             EP+   W + LGAC+IH + E+ +LA  K++KLEP N+G  VLLSNIY+  R  + + 
Sbjct: 473 PFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVR 532

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
            VRM MR+  +KK PGYS+V++  + H+F   D +H +   IY  LD L + ++      
Sbjct: 533 SVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHXRKSAIYEKLDXLLDQIKAAGYVP 592

Query: 432 RSDQK--NSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
            +D    + ++ + +  +  HSE++A+AF +I+   G  I+V KNLR+C DCH  IK +S
Sbjct: 593 XTDSVPLDMDDXMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFIS 652

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K+  R+ IVRD +RFHHF  G CSC DYW
Sbjct: 653 KVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 156/314 (49%), Gaps = 5/314 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+ISG   NS  SEA+  F  MR  G           +  C   G + +G   HC+
Sbjct: 72  VSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCL 131

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +KFG+  +  VG+ L  MY KCG++    K+F+++P K  ++W AMI GY++ G     
Sbjct: 132 ALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEA 191

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L  +++M    V  D       L +C  L A   G  V   +   GF S+ F+ NAL +M
Sbjct: 192 LLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDM 251

Query: 193 YARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           Y++ G+++ A  +F G+    + VVS+T +I GY      E  + +F E+ + GI P+  
Sbjct: 252 YSKAGDMESASNVF-GIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEF 310

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            F S++ AC++    ++G +  +    K      P   + +VD+ G+ G L  A++  + 
Sbjct: 311 TFSSLIKACANQAALEQGTQ-LHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDE 369

Query: 311 MLVEPDGAVWGALL 324
            + +P    W +L+
Sbjct: 370 -IGDPTEIAWNSLV 382



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 136/295 (46%), Gaps = 34/295 (11%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+ MY KCG +D+  KLFD +P++ L++W AMISG +QN   +  +  +  M+  G  
Sbjct: 44  NHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEV 103

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P    F   + +CA LG+  +G ++       G GS  F+ + L +MY++CG +  A  +
Sbjct: 104 PTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKV 163

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS----- 260
           F+ MP K  VSWTA+I GY   G  E A+  F +M+   +  D     S L AC      
Sbjct: 164 FEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKAC 223

Query: 261 ------HAGLTDKGLE--YFYG---------------MKNKYGLQPGPEH---YTCMVDL 294
                 H+ +   G E   F G                 N +G+     +   YTC++D 
Sbjct: 224 KFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDG 283

Query: 295 LGRAGQLNEALELIESML---VEPDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
                Q+ + L +   +    +EP+   + +L+ AC     +E       +V+K+
Sbjct: 284 YVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKI 338


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/532 (37%), Positives = 312/532 (58%), Gaps = 33/532 (6%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +NA+I+GY  +    +A+ LF +M    G+  N+ TM  ++P  V    +      H   
Sbjct: 286 WNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYV 345

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           +K GL+ +  + N L+ MY + G +   +++FD + ++ +++WN +I+ Y   G ++  L
Sbjct: 346 IKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDAL 405

Query: 134 ELYREM----------------KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
            L  EM                K +   P+++T + VL  CA L A + G E+      N
Sbjct: 406 LLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRN 465

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
              S   + +AL++MYA+CG L  AR +FD MP + V++W  II  YG+HG G+ +++LF
Sbjct: 466 LLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELF 525

Query: 238 DEMLKSG-----IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
           ++M+  G     ++P    F+++ ++CSH+G+ D+GL  F+ MKN++G++P P+HY C+V
Sbjct: 526 EDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIV 585

Query: 293 DLLGRAGQLNEALELIESMLVEPDG----AVWGALLGACKIHKNVELAELAFGKVIKLEP 348
           DL+GRAG++ EA  L+ +M   P G      W +LLGAC+I+ N+E+ E+A   +++L+P
Sbjct: 586 DLVGRAGKVEEAYGLVNTM---PSGFDKVGAWSSLLGACRIYHNIEIGEIAAENLLQLQP 642

Query: 349 MNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHH 408
               +YVLLSNIYS A   D  M +R  M+   +KK+PG S++E    VH F+ GD +H 
Sbjct: 643 DVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVHKFLAGDLSHP 702

Query: 409 QTVEIYRMLDKLENLVQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPG 464
           Q+ +++  L+ L   +++     D        + EE       HSEKLAIAFGI+NT PG
Sbjct: 703 QSEKLHDFLETLSERLKKEGYVPDTACVLHDIDEEEKETILCGHSEKLAIAFGILNTPPG 762

Query: 465 TEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           T I V KNLR+C DCH   K +SKI DR+ I+RDA RFHHFK G CSC DYW
Sbjct: 763 TTIRVAKNLRVCNDCHTASKFISKIEDREIILRDARRFHHFKDGTCSCGDYW 814



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/357 (29%), Positives = 168/357 (47%), Gaps = 12/357 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD- 59
           VFD   +     V +N++IS          A+  F  M  +G E +S T++ +   C + 
Sbjct: 69  VFDRITERDQ--VSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNL 126

Query: 60  --PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWN 117
                LWLG   H  C + G    FS  N LM MY K G +D  + L     ++ L+TWN
Sbjct: 127 RKRDGLWLGKQIHGCCFRKGHWRTFS-NNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWN 185

Query: 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ-QIQA 176
           +MIS ++QN      L   R M   GV PD VTF  VL +C+HL     G E+    ++ 
Sbjct: 186 SMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRT 245

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
           +    N F+ +AL++MY  CG ++  R +FD +  + +  W A+I GY    H E A+ L
Sbjct: 246 DDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALML 305

Query: 237 FDEM-LKSGIRPDGTAFVSVLSACSH-AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
           F EM   +G+  + T   S++ A     G++ K  E  +G   K GL+        ++D+
Sbjct: 306 FIEMEAAAGLYSNATTMSSIVPAYVRCEGISRK--EGIHGYVIKRGLETNRYLQNALIDM 363

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351
             R G +  +  + +SM  + D   W  ++ +  I      A L   ++ ++E  +T
Sbjct: 364 YSRMGDIKTSKRIFDSM-EDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKST 419



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 149/315 (47%), Gaps = 20/315 (6%)

Query: 63  LWLGMCCHCICVKFGLDL--DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           L+LG   H    KFG       ++ N L+ MY KCG +    K+FD++ E+  ++WN++I
Sbjct: 26  LYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYKVFDRITERDQVSWNSII 85

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           S   +       ++ +R M   G  P + T V +  +C++L     GL + +QI    F 
Sbjct: 86  SALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRD-GLWLGKQIHGCCFR 144

Query: 181 S---NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
                 F NNAL+ MYA+ G L  A+++      + +V+W ++I  +  +     A+   
Sbjct: 145 KGHWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFL 204

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLG 296
             M+  G++PDG  F SVL ACSH  L   G E + Y ++    ++      + +VD+  
Sbjct: 205 RLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVG-SALVDMYC 263

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356
             GQ+     + +S+L    G +W A++      ++ E A + F   I++E         
Sbjct: 264 NCGQVESGRLVFDSVLDRKIG-LWNAMIAGYAQSEHDEKALMLF---IEMEAA------- 312

Query: 357 LSNIYSEARNLDGIM 371
            + +YS A  +  I+
Sbjct: 313 -AGLYSNATTMSSIV 326



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 99/221 (44%), Gaps = 31/221 (14%)

Query: 143 GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGS--NPFLNNALINMYARCGNLK 200
           G  PD   F  VL + A +    +G ++   +   G+GS  +  ++N L+NMY +CG L 
Sbjct: 5   GFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLG 64

Query: 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
            A  +FD +  +  VSW +II         EVA++ F  ML  G  P     VS+  ACS
Sbjct: 65  DAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACS 124

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTC--------------MVDLLGRAGQLNEALE 306
           +             ++ + GL  G + + C              ++ +  + G+L++A  
Sbjct: 125 N-------------LRKRDGLWLGKQIHGCCFRKGHWRTFSNNALMAMYAKLGRLDDAKS 171

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE 347
           L+  +  + D   W +++ +   ++   +  L F +++ LE
Sbjct: 172 LL-VLFEDRDLVTWNSMISSFSQNERF-MEALMFLRLMVLE 210


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/546 (38%), Positives = 308/546 (56%), Gaps = 45/546 (8%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + + ++ S YV   L+ EA+  F KM   G   NSVT+  +LP C D   L  G   H  
Sbjct: 145 ISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGF 204

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP--------------------EKG 112
            V+ G+  +  V + L+ MY  C S+   + +FD +                     EKG
Sbjct: 205 VVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKG 264

Query: 113 L---------------ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
           L                +WNA+I G  QNG     LE+   M++ G  P+ +T   VL +
Sbjct: 265 LSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPA 324

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
           C +L +   G ++   I  + F  +     AL+ MYA+CG+L+ +R +F  M ++  VSW
Sbjct: 325 CTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSW 384

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
             +I    +HG+GE A+ LF EM+ SG+RP+   F  VLS CSH+ L D+GL  F  M  
Sbjct: 385 NTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSR 444

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
            + ++P  +H++CMVD+L RAG+L EA E I+ M +EP    WGALLG C+++KNVEL  
Sbjct: 445 DHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELGR 504

Query: 338 LAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRV 397
           +A  ++ ++E  N G YVLLSNI   A+        R +MR+R + K+PG S+++++ RV
Sbjct: 505 IAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQVRNRV 564

Query: 398 HLFMVGDRNHHQTVEIYRMLD------KLENLVQEHDGTKRS-DQKNSEEHLNDTEVHSE 450
           H F+VGD+++ Q+ EIYR LD      ++   +   D   +  DQ+  EE L +   HSE
Sbjct: 565 HTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPNTDFVLQDVDQEEKEEVLCN---HSE 621

Query: 451 KLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFC 510
           KLA+AFG++N +  + I V KNLRICGDCH  IK ++KIV  + IVRD+ RFHHF+ G C
Sbjct: 622 KLAVAFGVLNLNGESSIRVFKNLRICGDCHNAIKFMAKIVGVKIIVRDSLRFHHFRDGLC 681

Query: 511 SCKDYW 516
           SC+D+W
Sbjct: 682 SCQDFW 687



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 108/413 (26%), Positives = 188/413 (45%), Gaps = 42/413 (10%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +  LIS    +    EA+  +   R +  VE + + +L +   C     +      H   
Sbjct: 45  WTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLLLSVAKACASLRDVMNAKRVHEDA 104

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           ++FG   D  +GN L+ MY KC   +  R +F+ +P + +I+W +M S Y   GL    L
Sbjct: 105 IRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLREAL 164

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
             +R+M   G  P++VT   +L +C  L     G EV   +  NG G N F+++AL+NMY
Sbjct: 165 GAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMY 224

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
           A C ++++A+ +FD M R+  VSW  +I  Y ++   E  + +F  M+  G+  +  ++ 
Sbjct: 225 ASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWN 284

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP---------------------------E 286
           +V+  C   G T+K LE    M+N  G +P                              
Sbjct: 285 AVIGGCMQNGRTEKALEVLSRMQNS-GFKPNQITITSVLPACTNLESLRGGKQIHGYIFR 343

Query: 287 HY--------TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAEL 338
           H+        T +V +  + G L E    + SM+ + D   W  ++ A  +H N E A L
Sbjct: 344 HWFFQDLTTTTALVFMYAKCGDL-ELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALL 402

Query: 339 AFGKVIK--LEPMNTGYYVLLSNIYSEARNLD-GIMRVRMMMRERRLKKDPGY 388
            F +++   + P +  +  +LS   S +R +D G++    M R+  ++ D  +
Sbjct: 403 LFREMVDSGVRPNSVTFTGVLSGC-SHSRLVDEGLLIFDSMSRDHSVEPDADH 454



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 122/258 (47%), Gaps = 3/258 (1%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG-VCP 146
            + +Y   G +   R LFD++P+  L TW  +IS   ++G +   ++ Y + +    V P
Sbjct: 17  FIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEP 76

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF 206
           D +  + V  +CA L        V +     GF S+  L NALI+MY +C   + AR +F
Sbjct: 77  DKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVF 136

Query: 207 DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD 266
           +GMP + V+SWT++   Y   G    A+  F +M  +G RP+     S+L AC+      
Sbjct: 137 EGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLK 196

Query: 267 KGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
            G E  +G   + G+       + +V++      + +A  + +SM    D   W  L+ A
Sbjct: 197 SGRE-VHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSM-SRRDTVSWNVLITA 254

Query: 327 CKIHKNVELAELAFGKVI 344
             ++K  E     FG+++
Sbjct: 255 YFLNKECEKGLSVFGRMM 272



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML- 241
           P L    I +Y+  G+L++AR +FD +P+  + +WT +I     HG    A+Q +++   
Sbjct: 11  PHLALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRH 70

Query: 242 KSGIRPDGTAFVSVLSACS 260
           K+ + PD    +SV  AC+
Sbjct: 71  KNCVEPDKLLLLSVAKACA 89


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/508 (39%), Positives = 298/508 (58%), Gaps = 4/508 (0%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
            V + A+I+GYV + + SEA+ LF +M  +G++ +++     +  C     L  G   H  
Sbjct: 530  VSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQ 589

Query: 73   CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
                G   D S+ N L+++Y +CG +      F+++ +K  I+WN+++SG AQ+G     
Sbjct: 590  SYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEA 649

Query: 133  LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            L+++  M       +  T+   +S+ A L     G ++   +   G+ S   ++N+LI++
Sbjct: 650  LQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISL 709

Query: 193  YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
            YA+ G++  A   F+ M  + V+SW A+I GY  HG G  A++LF+EM   GI P+   F
Sbjct: 710  YAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTF 769

Query: 253  VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            V VLSACSH GL  +GL+YF  M   + L P  EHY C+VDLLGRAGQL+ A+E I+ M 
Sbjct: 770  VGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMP 829

Query: 313  VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            +  D  +W  LL AC IHKN+E+ E A   +++LEP ++  YVL+SNIY+ +R       
Sbjct: 830  IPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDW 889

Query: 373  VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
             R +M++R +KK+PG S++E+K  VH F  GD+ H  T +IY  +  L     E    + 
Sbjct: 890  SRKLMKDRGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGYVQD 949

Query: 433  SDQ--KNSEEHLND--TEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
            S      SE+   D  T VHSEKLAIAFG+++      I VMKNLR+C DCH +IK VSK
Sbjct: 950  SFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCNDCHNWIKYVSK 1009

Query: 489  IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            I +R  IVRDA RFHHF  G CSCKD+W
Sbjct: 1010 ISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 100/336 (29%), Positives = 160/336 (47%), Gaps = 2/336 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V YN+LISG V       A+ LF KM+   ++ + +T+  LL  C   G L  GM  H  
Sbjct: 328 VSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSH 387

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G+  D  +   L+ +Y KC  V+   K F     + ++ WN M+  Y Q    +  
Sbjct: 388 AIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDS 447

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            E++R+M+  G+ P+  T+  +L +C  LGA  +G ++   +   GF  N ++ + LI+M
Sbjct: 448 FEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDM 507

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+ G L  A  I   +P   VVSWTA+I GY  H     A+QLF+EM   GI+ D   F
Sbjct: 508 YAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGF 567

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S +SAC+      +G +  +      G          ++ L  R G++ EA    E  +
Sbjct: 568 ASAISACAGIRALRQG-QQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEK-I 625

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEP 348
            + +   W +L+         E A   F ++++ E 
Sbjct: 626 GDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEA 661



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 166/322 (51%), Gaps = 2/322 (0%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           T   V +N ++  Y     +S++  +F +M+ +G+  N  T   +L  C   G L+LG  
Sbjct: 425 TENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQ 484

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            H   +K G  L+  V + L+ MY K G +    ++  ++PE  +++W AMI+GY Q+ +
Sbjct: 485 IHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDM 544

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
            +  L+L+ EM+  G+  D + F   +S+CA + A   G ++  Q  A GFG++  +NNA
Sbjct: 545 FSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNA 604

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           LI++YARCG +++A   F+ +  K  +SW +++ G    G+ E A+Q+F  ML++    +
Sbjct: 605 LISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVN 664

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
              + S +SA +      +G +  + M  K G     E    ++ L  ++G +++A    
Sbjct: 665 MFTYGSAISAAASLANIKQG-QQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREF 723

Query: 309 ESMLVEPDGAVWGALLGACKIH 330
             M  E +   W A++     H
Sbjct: 724 NDM-SERNVISWNAMITGYSQH 744



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 113/462 (24%), Positives = 205/462 (44%), Gaps = 61/462 (13%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICV-- 58
           VFDE+  S      +N +I  +V      +   LF +M  +G+  N  T   +L  CV  
Sbjct: 115 VFDEN--SNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGG 172

Query: 59  DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
           D  + ++    H     +G D    V N L+ +Y K G ++  +K+F+ +  K ++TW A
Sbjct: 173 DIAFNYVKQV-HSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVA 231

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           MISG +QNGL    + L+ +M +  + P       VLS+   +    +G ++   +   G
Sbjct: 232 MISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWG 291

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
           F S  ++ N L+ +Y+R   L  A  IF  M  +  VS+ ++I G    G  + A++LF 
Sbjct: 292 FHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFT 351

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMK--------------------- 276
           +M +  ++PD     S+LSAC+  G   KG++ + + +K                     
Sbjct: 352 KMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCA 411

Query: 277 -----NKYGLQPGPEH---YTCMVDLLGRAGQLNEALELIESMLVE---PDGAVWGALLG 325
                +K+ L    E+   +  M+   G+   L+++ E+   M +E   P+   + ++L 
Sbjct: 412 DVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILR 471

Query: 326 ACKIHKNVELAELAFGKVIKLEPMNTGY----YV--LLSNIYSEARNLDGIMRVRMMMRE 379
            C       L  L  G+ I    + TG+    YV  +L ++Y++   L   +R+      
Sbjct: 472 TC-----TSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRIL----- 521

Query: 380 RRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLE 421
           RRL +D   S+  +       + G   H    E  ++ +++E
Sbjct: 522 RRLPEDDVVSWTAM-------IAGYVQHDMFSEALQLFEEME 556



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 147/303 (48%), Gaps = 13/303 (4%)

Query: 29  SEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCL 88
           S+ + L   M E+GV  N    L LL  C+  G L+  M  HC   K G D +  + + L
Sbjct: 40  SKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSL 99

Query: 89  MTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDA 148
           +  Y + G      K+FD+   + + +WN MI  +        V  L+R M + G+ P+ 
Sbjct: 100 VDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNG 159

Query: 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQAN----GFGSNPFLNNALINMYARCGNLKKARA 204
            TF GVL +C       +     +Q+ +     GF S+P + N LI++Y++ G ++ A+ 
Sbjct: 160 YTFAGVLKACV---GGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKK 216

Query: 205 IFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL 264
           +F+ +  K +V+W A+I G   +G  E A+ LF +M  S I P      SVLSA +   L
Sbjct: 217 VFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQL 276

Query: 265 TDKGLEYFYGMKNKYGLQPGPEHYTC--MVDLLGRAGQLNEALELIESMLVEPDGAVWGA 322
            + G E  + +  K+G     E Y C  +V L  R+ +L  A E I S +   DG  + +
Sbjct: 277 FELG-EQLHCLVIKWGFH--SETYVCNGLVALYSRSRKLISA-ERIFSTMNSRDGVSYNS 332

Query: 323 LLG 325
           L+ 
Sbjct: 333 LIS 335


>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
 gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
          Length = 607

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/512 (40%), Positives = 304/512 (59%), Gaps = 12/512 (2%)

Query: 16  NALISGYVLNSLVS---EAVSLFGKMREQGVEINSVTMLCLLPICVD-PGYLWLGMCCHC 71
           N LI  +  + L S    A + F  M    V  N  T   LL  C   PG+  +G+  H 
Sbjct: 97  NTLIRAHAASPLPSARLRAAAFFPLMLRSAVLPNKFTFPFLLKACAALPGFPGVGLQAHA 156

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYG--RKLFDQVPEKGLITWNAMISGYAQNGLA 129
             +KFG   D  V N L+ MY   G    G  R +FD++ +  ++TW+AMI GY + GL+
Sbjct: 157 AALKFGFATDQYVSNTLIHMYSCFGGEFLGDARNVFDRMDKSSVVTWSAMIGGYVRGGLS 216

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
           +  + L+REM++ GV PD VT +GVL++ A LGA  +   V + ++  G G +  L NAL
Sbjct: 217 SDAVGLFREMQASGVRPDEVTVIGVLAAAADLGALELARWVGRFVEREGIGKSVTLCNAL 276

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           I+  A+CG++  A A+F GM  +TVVSWT++I    + G G+ AV +F+ M  +G+RPD 
Sbjct: 277 IDALAKCGDVDGAVAVFQGMEERTVVSWTSVIDALAMEGRGKEAVAVFEAMKTAGVRPDD 336

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
             F+ VL+ACSHAG+ D+G  YF  MK +YG+ P  EHY CMVD+ GRAG +  A+E I 
Sbjct: 337 VVFIGVLTACSHAGMVDEGYGYFDSMKMEYGIDPKIEHYGCMVDMFGRAGMVERAMEFIH 396

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDG 369
           +M ++P+  +W  L+ AC+ H  +EL E     ++   P +   YV+LSN+Y+  +    
Sbjct: 397 TMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEYPAHEANYVMLSNVYALTQRWKE 456

Query: 370 IMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDG 429
              +R  M +R +KK PG S VEL G VH F+ GD +H Q  EIY M++++   ++ H G
Sbjct: 457 KSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQWKEIYMMVEEMARELK-HVG 515

Query: 430 TKRSDQK-----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
              +  +     + E+     + HSEKLAIAF ++ T PGT++ V+KNLR+C DCH  IK
Sbjct: 516 HISATSEVLLDLDEEDKEGALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCSDCHAAIK 575

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +S + +R+ IVRD +RFH FK+G CSC D+W
Sbjct: 576 CISLVYNREIIVRDRSRFHRFKNGSCSCNDFW 607



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 123/248 (49%), Gaps = 14/248 (5%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD   KS+   V ++A+I GYV   L S+AV LF +M+  GV  + VT++ +L    D 
Sbjct: 191 VFDRMDKSS--VVTWSAMIGGYVRGGLSSDAVGLFREMQASGVRPDEVTVIGVLAAAADL 248

Query: 61  GYL----WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
           G L    W+G        + G+    ++ N L+    KCG VD    +F  + E+ +++W
Sbjct: 249 GALELARWVGR----FVEREGIGKSVTLCNALIDALAKCGDVDGAVAVFQGMEERTVVSW 304

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
            ++I   A  G     + ++  MK+ GV PD V F+GVL++C+H G    G      ++ 
Sbjct: 305 TSVIDALAMEGRGKEAVAVFEAMKTAGVRPDDVVFIGVLTACSHAGMVDEGYGYFDSMKM 364

Query: 177 NGFGSNPFLNN--ALINMYARCGNLKKARAIFDGMPRK-TVVSWTAIIGGYGIHGHGEVA 233
             +G +P + +   +++M+ R G +++A      MP K   + W  ++     HG  E+ 
Sbjct: 365 E-YGIDPKIEHYGCMVDMFGRAGMVERAMEFIHTMPMKPNPIIWRTLVAACRAHGRLELG 423

Query: 234 VQLFDEML 241
             +   +L
Sbjct: 424 ESITRNLL 431


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/510 (38%), Positives = 294/510 (57%), Gaps = 7/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +  GY        A+ L  ++   G+  +  T   LL  C     L  G   HC+
Sbjct: 101 VLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKACARLKALEEGKQLHCL 160

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK G+  +  V   L+ MY  C  VD  R++FD++ E  ++ +NA+I+  A+N      
Sbjct: 161 AVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYNAIITSCARNSRPNEA 220

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+RE++  G+ P  VT +  LSSCA LGA  +G  + + ++ NGF     +N ALI+M
Sbjct: 221 LALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKNGFDQYVKVNTALIDM 280

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG+L  A ++F  MPR+   +W+A+I  Y  HGHG  A+ +  EM K+ ++PD   F
Sbjct: 281 YAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPDEITF 340

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + +L ACSH GL ++G EYF+ M ++YG+ P  +HY CM+DLLGRAG+L EA + I+ + 
Sbjct: 341 LGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELP 400

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           ++P   +W  LL +C  H NVE+A+L   ++ +L+  + G YV+LSN+ +     D +  
Sbjct: 401 IKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELDDSHGGDYVILSNLCARNGRWDDVNH 460

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD------KLENLVQE 426
           +R MM ++   K PG S +E+   VH F  GD  H  +  ++  LD      KL   V +
Sbjct: 461 LRKMMVDKGALKVPGCSSIEVNNVVHEFFSGDGVHSTSTILHHALDELVKELKLAGYVPD 520

Query: 427 HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
                 +D ++ E+ +     HSEKLAI +G++NT PGT I V+KNLR+C DCH   K +
Sbjct: 521 TSLVFYADIEDEEKEIV-LRYHSEKLAITYGLLNTPPGTTIRVVKNLRVCVDCHNAAKFI 579

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           S I  RQ I+RD  RFHHFK G CSC DYW
Sbjct: 580 SLIFGRQIILRDVQRFHHFKDGKCSCGDYW 609



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 116/235 (49%), Gaps = 2/235 (0%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
            S+D+  ++FD++P+  ++ +N M  GYA+       + L  ++   G+ PD  TF  +L
Sbjct: 83  ASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLL 142

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
            +CA L A   G ++       G G N ++   LINMY  C ++  AR +FD +    VV
Sbjct: 143 KACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVV 202

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           ++ AII     +     A+ LF E+ +SG++P     +  LS+C+  G  D G  + +  
Sbjct: 203 AYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLG-RWIHEY 261

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
             K G     +  T ++D+  + G L++A+ + + M    D   W A++ A   H
Sbjct: 262 VKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDM-PRRDTQAWSAMIVAYATH 315


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/510 (38%), Positives = 302/510 (59%), Gaps = 7/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++  GY  ++   E  +LF ++ E  +  ++ T   LL  C     L  G   HC+
Sbjct: 97  VIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAVAKALEEGRQLHCL 156

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G+D +  V   L+ MY +C  VD  R +FD++ E  ++ +NAMI+GYA+       
Sbjct: 157 SMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYARRNRPNEA 216

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+REM+   + P+ +T + VLSSCA LG+  +G  + +  + +GF     +N ALI+M
Sbjct: 217 LSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYVKVNTALIDM 276

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           +A+CG+L  A +IF+ M  K   +W+A+I  Y  HG  E ++ +F+ M    ++PD   F
Sbjct: 277 FAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQPDEITF 336

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + +L+ACSH GL ++G EYF  M +++G+ P  +HY  MVDLLGRAG L +A E I+ + 
Sbjct: 337 LGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLEDAYEFIDKLP 396

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           + P   +W  LL AC  H N+ELAE    ++++L+  + G YV+LSN+Y+  +  + +  
Sbjct: 397 ISPTPMLWRILLAACSSHNNLELAEKVSERILELDDSHGGDYVILSNLYARNKKWEAVDS 456

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD------KLENLVQE 426
           +R +M++R+  K PG S +E+   VH F  GD     T +++R LD      KL   V +
Sbjct: 457 LRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLAGYVPD 516

Query: 427 HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
                 +D  + E+ +     HSEKLAIAFG++NT PGT I V+KNLR+C DCH   KL+
Sbjct: 517 TSMVVHADMGDQEKEIT-LRYHSEKLAIAFGLLNTPPGTTIRVVKNLRVCRDCHSAAKLI 575

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           S I  R+ ++RD  RFHHF+ G CSC+D+W
Sbjct: 576 SLIFGRKVVLRDVQRFHHFEDGKCSCRDFW 605



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 123/248 (49%), Gaps = 2/248 (0%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
            S+ Y R LFD + E  ++ +N++  GY+++     V  L+ E+    + PD  TF  +L
Sbjct: 79  SSMSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLL 138

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
            +CA   A   G ++       G   N ++   LINMY  C ++  AR +FD +    VV
Sbjct: 139 KACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVV 198

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
            + A+I GY        A+ LF EM    ++P+    +SVLS+C+  G  D G ++ +  
Sbjct: 199 CYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLG-KWIHEY 257

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVEL 335
             K+G     +  T ++D+  + G L++A+ + E+M  + D   W A++ A   H   E 
Sbjct: 258 AKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYK-DTQAWSAMIVAYANHGQAEN 316

Query: 336 AELAFGKV 343
           + L F ++
Sbjct: 317 SMLMFERM 324


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/481 (41%), Positives = 284/481 (59%), Gaps = 35/481 (7%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKC--GSVDYGRKLFDQVP------------------ 109
           HC  VK G+     V N +++ Y KC  G ++   KLFD++P                  
Sbjct: 1   HCQAVKPGIFSHGYVANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAYFESA 60

Query: 110 --------EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL 161
                   EK ++ WN++I+G+A NG     L LY+ M S GV PD  T V +LS+CA L
Sbjct: 61  YKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAEL 120

Query: 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP-RKTVVSWTAI 220
               +G      +   G   N   NNAL+++YA+CG + +AR IFD M   + VVSWT++
Sbjct: 121 ATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSL 180

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           I G  ++G G+ A++ F +M + G+ P    FV VL ACSH G+ ++G EYF  MK +Y 
Sbjct: 181 IVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYD 240

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           + P  EHY CMVDLLGRAG L EA + I+ M ++P+  +W  LLGAC IH ++ L   A 
Sbjct: 241 IVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFAR 300

Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400
            ++++LEP ++G YVLLSN+Y+  +    +  VR  M    ++K PGYS VEL   VH F
Sbjct: 301 ARLLQLEPKDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGNHVHEF 360

Query: 401 MVGDRNHHQTVEIYRMLDKLENLVQ-----EHDGTKRSDQKNSEEHLNDTEVHSEKLAIA 455
           ++GDR H Q+  IY+ML ++   ++      H     +D +  EE  +    HSEK+AIA
Sbjct: 361 VMGDRTHPQSEAIYKMLVEMAMKLKLAGYVPHTANVLADIE-EEEKESALFYHSEKIAIA 419

Query: 456 FGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDY 515
           F +INT PGT I ++KNLR+C DCH  IKL+SK+ +R  +VRD +RFHHF+ G CSC+DY
Sbjct: 420 FMLINTLPGTPIRIIKNLRVCADCHFAIKLISKVFERDIVVRDCSRFHHFRDGSCSCRDY 479

Query: 516 W 516
           W
Sbjct: 480 W 480



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 127/221 (57%), Gaps = 5/221 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++I+G+ LN   +EA++L+ +M  +GVE +  TM+ LL  C +   L LG   H  
Sbjct: 73  VAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELATLVLGRRAHVY 132

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP-EKGLITWNAMISGYAQNGLATH 131
            VK GL+ +    N L+ +Y KCG++   RK+FD++  E+ +++W ++I G A NG    
Sbjct: 133 MVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNGFGKE 192

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--AL 189
            LE +++M+  G+ P  +TFVGVL +C+H G  + G E  ++++   +   P + +   +
Sbjct: 193 ALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQ-YDIVPRIEHYGCM 251

Query: 190 INMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGH 229
           +++  R G LK+A      MP +   V W  ++G   IHGH
Sbjct: 252 VDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGH 292


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/515 (38%), Positives = 303/515 (58%), Gaps = 5/515 (0%)

Query: 6   IKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWL 65
           I+S  L   +NALI GY  +S    ++    +M+  G+  ++ T+  LL  C     L L
Sbjct: 440 IRSKTLN-SWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRL 498

Query: 66  GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
           G   H   ++  L+ D  V   ++++Y+ CG +   + LFD + +  L++WN +I+G+ Q
Sbjct: 499 GKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQ 558

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
           NG     L L+R+M   G+ P  ++ + V  +C+ L +  +G E       +    N F+
Sbjct: 559 NGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALKHLLEDNAFI 618

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
             ++I+MYA+ G + ++  +F+G+  K+  SW A+I GYG+HG  + A++LF+EM ++G 
Sbjct: 619 ACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGR 678

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
            PD   F+ VL+AC+H+GL  +GL Y   MK+ +GL+P  +HY C++D+LGRAGQL+ AL
Sbjct: 679 NPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNAL 738

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR 365
            +   M  EPD  +W +LL  C+IH+N+E+ E    K+  LEP     YVLLSN+Y+   
Sbjct: 739 RVAAEMSEEPDVGIWNSLLSWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSNLYAGLG 798

Query: 366 NLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ 425
             D + +VR  M+E  L+KD G S++EL G+V  F+VG+R      EI  +   LE  + 
Sbjct: 799 KWDDVRQVRQRMKEMSLRKDAGCSWIELNGKVFSFVVGERFLDGFEEIKSLWSILEMKIW 858

Query: 426 E----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHL 481
           +     D +      + EE +     HSEKLAI +G+I TS GT + V KNLRIC DCH 
Sbjct: 859 KMGYRPDTSSVQHDLSEEEKIEQLRGHSEKLAITYGLIKTSEGTTLRVYKNLRICVDCHN 918

Query: 482 FIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
             KL+SK+++R+ +VRD  RFHHF  GFCSC DYW
Sbjct: 919 AAKLISKVMEREIVVRDNKRFHHFNKGFCSCGDYW 953



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 112/415 (26%), Positives = 187/415 (45%), Gaps = 57/415 (13%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMR--EQGVEINSVTMLCLLPICVDPGYLWLGMCC 69
            V +N ++ G+     +     L  +M    + V+ + VT+L  +P+C D   L      
Sbjct: 342 VVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLPSLKEL 401

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           HC  +K     D  + N  +  Y KCGS+ Y +++F  +  K L +WNA+I GYAQ+   
Sbjct: 402 HCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDP 461

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              L+ + +MK+ G+ PD  T   +LS+C+ L +  +G EV   I  N    + F+  ++
Sbjct: 462 RLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSV 521

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           +++Y  CG L   + +FD M   ++VSW  +I G+  +G  E A+ LF +M+  GI+P G
Sbjct: 522 LSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCG 581

Query: 250 TAFVSVLSACS-----------HA------------------------GLTDKGLEYFYG 274
            + ++V  ACS           HA                        G   +  + F G
Sbjct: 582 ISMMTVFGACSLLPSLRLGREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNG 641

Query: 275 MKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGACK--- 328
           +K K         +  M+   G  G+  EA++L E M      PD   +  +L AC    
Sbjct: 642 LKEK-----SAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSG 696

Query: 329 -IHKNVELAEL---AFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379
            +H+ +   +    +FG    L+P N  +Y  + ++   A  LD  +RV   M E
Sbjct: 697 LLHEGLRYLDQMKSSFG----LKP-NLKHYACVIDMLGRAGQLDNALRVAAEMSE 746



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 114/248 (45%), Gaps = 15/248 (6%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +NA+IS Y  N L  E + +F KM  +  +  ++ T  C++  C     + +G+  H + 
Sbjct: 154 WNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGLAVHGLV 213

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           VK GL  D  VGN L++ Y   G V    KLFD +PE+ L++WN+MI  ++ NG      
Sbjct: 214 VKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNG------ 267

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
                       PD  T V VL  CA      VG  V              +NNAL++MY
Sbjct: 268 ------DDGAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMY 321

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML--KSGIRPDGTA 251
           ++ G +  ++ IF     K VVSW  ++GG+   G       L  +ML     ++ D   
Sbjct: 322 SKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVT 381

Query: 252 FVSVLSAC 259
            ++ +  C
Sbjct: 382 ILNAVPVC 389



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 87/175 (49%), Gaps = 13/175 (7%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKS-LGVCP 146
           ++TMY  CGS D  R  FD +  K L  WNA+IS Y++N L   VLE++ +M S   + P
Sbjct: 126 IITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLP 185

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF 206
           D  TF  V+ +CA +    +GL V   +   G   + F+ NAL++ Y   G +  A  +F
Sbjct: 186 DNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLF 245

Query: 207 DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261
           D MP + +VSW ++I  +  +G                  PD    V+VL  C+ 
Sbjct: 246 DIMPERNLVSWNSMIRVFSDNGD------------DGAFMPDVATVVTVLPVCAR 288



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 5/146 (3%)

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S+  L   +I MYA CG+   +R+ FD +  K +  W A+I  Y  +      +++F +M
Sbjct: 118 SDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKM 177

Query: 241 L-KSGIRPDGTAFVSVLSACSHAGLTDKGLEY-FYGMKNKYGLQPGPEHYTCMVDLLGRA 298
           + K+ + PD   F  V+ AC  AG++D G+    +G+  K GL         +V   G  
Sbjct: 178 ISKTHLLPDNFTFPCVIKAC--AGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTH 235

Query: 299 GQLNEALELIESMLVEPDGAVWGALL 324
           G +++AL+L + ++ E +   W +++
Sbjct: 236 GFVSDALKLFD-IMPERNLVSWNSMI 260


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/513 (38%), Positives = 291/513 (56%), Gaps = 12/513 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +  L+ GY     +  A+ LF +M  +GVE++      +L +C       +G   H 
Sbjct: 254 AVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHS 313

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             VK G + + SVG  L+  YVKCG ++   + F ++ E   ++W+A+ISG++Q+G    
Sbjct: 314 HIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLED 373

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            ++++  ++S GV  ++  +  V  +CA     ++G +        G  S  +  +A++ 
Sbjct: 374 CIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVT 433

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY++CG L  AR  F+ +     V+WTAII GY  HG+   A+  F  M   G+RP+   
Sbjct: 434 MYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVT 493

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F++VL+ACSH+GL  +  +Y   M   YG++P  +HY CM+D   RAG L EALELI  M
Sbjct: 494 FIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLQEALELINRM 553

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
             EPD   W +LLG C  H +++L ++A   + +L+P +T  Y+LL N+YS     +   
Sbjct: 554 PFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAGYILLFNLYSAFGKWEEAG 613

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLE--------NL 423
            VR +M ER LKK+   S++ +KG+VH F+VGDR+H QT  IY  L++ +         L
Sbjct: 614 HVRKLMAERELKKEVSCSWISVKGQVHRFVVGDRHHPQTEAIYSKLEEFKCSVIDSPVRL 673

Query: 424 VQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFI 483
           + E D    S     E+ L+    HSEKLAIAFG+I+T     I+V KNLR C DCH F 
Sbjct: 674 LNEEDDVSCSLSARKEQLLD----HSEKLAIAFGLISTEDNAPILVFKNLRACRDCHEFG 729

Query: 484 KLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K VS +  RQ +VRD+TRFHHFKSG CSC DYW
Sbjct: 730 KQVSMVTGRQIVVRDSTRFHHFKSGKCSCNDYW 762



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 173/379 (45%), Gaps = 13/379 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE +      V +  +IS Y  N  + +A+ LF  M+  G+  NS   + LL  C+ P
Sbjct: 144 VFDEMLMKN--LVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGP 201

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
            +L LG   H   ++  L+ + +V   +  MYV+CG ++  + +FD +  +  +TW  ++
Sbjct: 202 SFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLM 261

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GY Q       LEL+  M   GV  D   F  VL  C  L    +G ++   I   G  
Sbjct: 262 VGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLGAE 321

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S   +   L++ Y +CG+++ A   F  +     VSW+A+I G+   G  E  +++F  +
Sbjct: 322 SEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSL 381

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
              G+  +   + SV  AC+     + G +  +G   K GL       + MV +  + G+
Sbjct: 382 RSEGVVLNSFIYTSVFQACAAQANLNMGSQA-HGDAIKRGLVSYLYGESAMVTMYSKCGR 440

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK---LEPMNTGYYVLL 357
           L+ A    ES + EPD   W A++     H N   A L F + ++   + P    +  +L
Sbjct: 441 LDYARRAFES-IDEPDAVAWTAIISGYAYHGNAAEA-LGFFRRMQSYGVRPNAVTFIAVL 498

Query: 358 -----SNIYSEARNLDGIM 371
                S + +EA+   G M
Sbjct: 499 TACSHSGLVAEAKQYLGSM 517



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 139/298 (46%), Gaps = 4/298 (1%)

Query: 28  VSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNC 87
           + EA     +M +  V +   +  CL   C     L  G   H    +   +   S+ NC
Sbjct: 68  LKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSIENC 127

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L+ MY  CGS    +K+FD++  K L++W  +IS YA+NG     + L+ +M++ G+ P+
Sbjct: 128 LLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPN 187

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
           +  ++ +L SC       +G ++   +      +N  +  A+ NMY RCG L+ A+ +FD
Sbjct: 188 SAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFD 247

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
           GM  +  V+WT ++ GY      EVA++LF  M   G+  D   F  VL  C   GL D 
Sbjct: 248 GMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVC--CGLEDW 305

Query: 268 GL-EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
            +    +    K G +      T +VD   + G +  A       + EP+   W AL+
Sbjct: 306 DMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSF-GRISEPNDVSWSALI 362



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 99/227 (43%), Gaps = 2/227 (0%)

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
           N  +   ++ G      +  +EM    V     ++  +  +C  L + + G  +  +++ 
Sbjct: 56  NLHLVSLSKQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRR 115

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
                +  + N L+ MY  CG+    + +FD M  K +VSW  +I  Y  +G  E A++L
Sbjct: 116 TVKNPSGSIENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRL 175

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           F +M  SGIRP+   ++S+L +C      + G +  +    +  L       T + ++  
Sbjct: 176 FSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQ-IHSHVIRAQLNANITVETAICNMYV 234

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
           R G L E  +L+   +   +   W  L+      K +E+A   F ++
Sbjct: 235 RCGWL-EGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARM 280


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/551 (37%), Positives = 317/551 (57%), Gaps = 38/551 (6%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE   +++L +C NA+ S YV   L  EA+ +F  M + GV  + ++ML  +  C   
Sbjct: 293 LFDE-YGASNLDLC-NAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQL 350

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKC------------------------- 95
             +  G  CH   ++ G +   ++ N L+ MY+KC                         
Sbjct: 351 RNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIV 410

Query: 96  ------GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL-GVCPDA 148
                 G VD   + F+ +PEK +++WN +ISG  Q  L    +E++  M+S  GV  D 
Sbjct: 411 AGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADG 470

Query: 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208
           VT + + S+C HLGA  +   +   I+ NG   +  L   L++M++RCG+ + A +IF+ 
Sbjct: 471 VTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNS 530

Query: 209 MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
           +  + V +WTA IG   + G+ E A++LFD+M++ G++PDG AFV  L+ACSH GL  +G
Sbjct: 531 LTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQG 590

Query: 269 LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACK 328
            E FY M   +G+ P   HY CMVDLLGRAG L EA++LIE M +EP+  +W +LL AC+
Sbjct: 591 KEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACR 650

Query: 329 IHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGY 388
           +  NVE+A  A  K+  L P  TG YVLLSN+Y+ A   + + +VR+ M+E+ L+K PG 
Sbjct: 651 VQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGT 710

Query: 389 SYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLEN----LVQEHDGTKRSDQKNSEEHLND 444
           S ++++G+ H F  GD +H +   I  MLD++      L    D +      + +E +  
Sbjct: 711 SSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFM 770

Query: 445 TEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHH 504
              HSEKLA+A+G+I+++ GT I ++KNLR+C DCH F K  SK+ +R+ I+RD  RFH+
Sbjct: 771 LSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHY 830

Query: 505 FKSGFCSCKDY 515
            + G CSC D+
Sbjct: 831 IRQGKCSCGDF 841



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 116/383 (30%), Positives = 176/383 (45%), Gaps = 39/383 (10%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVD 59
           VFDE   S    V + ++I GY       +AV LF +M R++ V  NSVTM+C++  C  
Sbjct: 191 VFDE--MSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAK 248

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              L  G   +      G++++  + + L+ MY+KC ++D  ++LFD+     L   NAM
Sbjct: 249 LEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAM 308

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
            S Y + GL    L ++  M   GV PD ++ +  +SSC+ L     G      +  NGF
Sbjct: 309 ASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGF 368

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            S   + NALI+MY +C     A  IFD M  KTVV+W +I+ GY  +G  + A + F+ 
Sbjct: 369 ESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFET 428

Query: 240 M--------------------------------LKSGIRPDGTAFVSVLSACSHAGLTDK 267
           M                                 + G+  DG   +S+ SAC H G  D 
Sbjct: 429 MPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDL 488

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
             ++ Y    K G+Q      T +VD+  R G    A+ +  S L   D + W A +GA 
Sbjct: 489 A-KWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNS-LTNRDVSAWTAAIGAM 546

Query: 328 KIHKNVELAELAFGKVIK--LEP 348
            +  N E A   F  +I+  L+P
Sbjct: 547 AMAGNAERAIELFDDMIEQGLKP 569



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 133/248 (53%), Gaps = 1/248 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           YN+LI GY  + L +EA+ LF +M   G+  +  T    L  C        G+  H + V
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K G   D  V N L+  Y +CG +D  RK+FD++ E+ +++W +MI GYA+   A   ++
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221

Query: 135 L-YREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
           L +R ++   V P++VT V V+S+CA L     G +V   I+ +G   N  + +AL++MY
Sbjct: 222 LFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMY 281

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
            +C  +  A+ +FD      +    A+   Y   G    A+ +F+ M+ SG+RPD  + +
Sbjct: 282 MKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISML 341

Query: 254 SVLSACSH 261
           S +S+CS 
Sbjct: 342 SAISSCSQ 349



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 121/245 (49%), Gaps = 6/245 (2%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCG---SVDYGRKLFDQVPEKGL-ITWNAMISGYAQ 125
           H    K GLD D S    L+    + G   S+ + +++F+     G    +N++I GYA 
Sbjct: 52  HRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYAS 111

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
           +GL    + L+  M + G+ PD  TF   LS+CA   A   G+++   I   G+  + F+
Sbjct: 112 SGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFV 171

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS-G 244
            N+L++ YA CG L  AR +FD M  + VVSWT++I GY      + AV LF  M++   
Sbjct: 172 QNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEE 231

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
           + P+    V V+SAC+     + G E  Y      G++      + +VD+  +   ++ A
Sbjct: 232 VTPNSVTMVCVISACAKLEDLETG-EKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVA 290

Query: 305 LELIE 309
             L +
Sbjct: 291 KRLFD 295


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/485 (41%), Positives = 296/485 (61%), Gaps = 7/485 (1%)

Query: 39  REQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSV 98
           R +    ++ T   LL  C     L  G   H    K GL     V N L+  Y  CG  
Sbjct: 112 RRRLAPPDTHTYPPLLQACTRLLALREGESLHAEAAKNGLVALVFVKNSLVHHYGACGLF 171

Query: 99  DYGRKLFDQVP--EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS 156
           +   ++FD++P  E+ L++WN++++G+A NG    VL ++RE     + PD  T V VL+
Sbjct: 172 ESAHRVFDEIPVLERNLVSWNSVMNGFAANGRPNEVLTIFRETLEADLMPDGFTIVSVLT 231

Query: 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM-PRKTVV 215
           +CA +GA ++G  V       G   N  + NALI++YA+CG ++ A  +F+ M   +TVV
Sbjct: 232 ACAEIGALTLGRRVHVFASKVGLVGNSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVV 291

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           SWT++I G   +G G+ A++LF  M +  + P     V VL ACSH GL D G  YF  M
Sbjct: 292 SWTSLIVGLAGNGFGKDALELFGLMERERLIPTDITMVGVLYACSHCGLVDDGFRYFNEM 351

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVEL 335
           ++KYG+ PG EH  CMVDLLGRAG++ EA   I +M VEP+  VW  LLGAC +HK +EL
Sbjct: 352 QDKYGIAPGIEHLGCMVDLLGRAGRVEEAHNYITTMPVEPNAVVWRTLLGACAMHKKLEL 411

Query: 336 AELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKG 395
            E A+ ++++L+P ++G YVLLSN+Y+          +R  M    ++K+PG+S VEL+ 
Sbjct: 412 GEAAWARLVELDPGHSGDYVLLSNLYAAVGRWADAHVLRKTMATHGVRKNPGHSLVELRN 471

Query: 396 RVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQ--KNSEEHLNDTEV--HSEK 451
            V+ F++GDR+H ++ +IY+ L ++   ++      R+     + EE   +T +  HSE+
Sbjct: 472 SVYEFVMGDRSHPESDQIYQTLAEIAERLRCQGYVPRTSNVLADIEEEEKETALNYHSER 531

Query: 452 LAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCS 511
           LAIAF ++ + PG+ I ++KNLR+CGDCHL IKL+SK+ DR+ IVRD +RFHHFK G CS
Sbjct: 532 LAIAFALLKSLPGSPIRIVKNLRMCGDCHLVIKLISKVYDREIIVRDRSRFHHFKGGECS 591

Query: 512 CKDYW 516
           CKDYW
Sbjct: 592 CKDYW 596



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 118/231 (51%), Gaps = 5/231 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE        V +N++++G+  N   +E +++F +  E  +  +  T++ +L  C + 
Sbjct: 177 VFDEIPVLERNLVSWNSVMNGFAANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEI 236

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV-PEKGLITWNAM 119
           G L LG   H    K GL  +  VGN L+ +Y KCG V+   K+F+++   + +++W ++
Sbjct: 237 GALTLGRRVHVFASKVGLVGNSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSL 296

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I G A NG     LEL+  M+   + P  +T VGVL +C+H G    G     ++Q + +
Sbjct: 297 IVGLAGNGFGKDALELFGLMERERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQ-DKY 355

Query: 180 GSNPFLNN--ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIH 227
           G  P + +   ++++  R G +++A      MP     V W  ++G   +H
Sbjct: 356 GIAPGIEHLGCMVDLLGRAGRVEEAHNYITTMPVEPNAVVWRTLLGACAMH 406


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/520 (40%), Positives = 296/520 (56%), Gaps = 6/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF+E  + +   V + AL SGY       EA+ LF KM E GV  +S  ++ +L  CV  
Sbjct: 168 VFEEIPERS--VVTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHV 225

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  G        +  +  +  V   L+ +Y KCG ++  R +FD + EK ++TW+ MI
Sbjct: 226 GDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMI 285

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GYA N      +E + +M    + PD  + VG LSSCA LGA  +G      I  + F 
Sbjct: 286 QGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFL 345

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           +N F+ NALI+MYA+CG + +   +F  M  K +V   A I G   +GH +++  +F + 
Sbjct: 346 TNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQT 405

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            K GI PDG+ F+ +L  C HAGL   GL +F  +   Y L+   EHY CMVDL GRAG 
Sbjct: 406 EKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGM 465

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L++A  LI  M + P+  VWGALL  C++ K+ +LAE    ++I LEP N G YV LSNI
Sbjct: 466 LDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNI 525

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           YS +   D    VR MM  + +KK PGYS++EL+G VH F+  D++H  + +IY  L+ L
Sbjct: 526 YSVSGRWDEAAEVRDMMNRKGMKKIPGYSWIELEGTVHEFLADDKSHPLSDKIYAKLEDL 585

Query: 421 ENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
            N ++       ++        EE       HSEKLA+AFG+I+T  G  I V+KNLR+C
Sbjct: 586 GNEMRLMGFVPTTEFVFFDVEDEEKERVLGHHSEKLAVAFGLISTDHGQVIRVVKNLRVC 645

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           GDCH  +KL+SKI  R+ +VRD  RFH F +G CSC DYW
Sbjct: 646 GDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 178/332 (53%), Gaps = 2/332 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           YN LI+G+V N L  E + LF  +R+ G+ ++  T   +L  C       LG+  H + V
Sbjct: 79  YNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGIDLHSLVV 138

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K G + D +    L+++Y   G ++   K+F+++PE+ ++TW A+ SGY   G     ++
Sbjct: 139 KCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAID 198

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+++M  +GV PD+   V VLS+C H+G    G  + + ++      N F+   L+N+YA
Sbjct: 199 LFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYA 258

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG ++KAR++FD M  K +V+W+ +I GY  +   +  ++ F +ML+  ++PD  + V 
Sbjct: 259 KCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVG 318

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
            LS+C+  G  D G E+   + +++           ++D+  + G +    E+ + M  E
Sbjct: 319 FLSSCASLGALDLG-EWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEM-KE 376

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
            D  +  A +     + +V+L+   FG+  KL
Sbjct: 377 KDIVIMNAAISGLAKNGHVKLSFAVFGQTEKL 408



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 120/255 (47%), Gaps = 2/255 (0%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   +   L  D  + N L+   +      Y   LF       +  +N +I+G+  N L 
Sbjct: 33  HVSLIHHHLHHDTFLVNLLLKRTLFFRQTHYSFLLFSHTQFPNIFLYNTLINGFVNNHLF 92

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              L+L+  ++  G+     TF  VL +C       +G+++   +   GF  +     +L
Sbjct: 93  HETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGIDLHSLVVKCGFNHDVAAMTSL 152

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           +++Y+  G L  A  +F+ +P ++VV+WTA+  GY   G    A+ LF +M++ G+RPD 
Sbjct: 153 LSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDS 212

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
              V VLSAC H G  D G E+      +  +Q      T +V+L  + G++ +A  + +
Sbjct: 213 YFIVQVLSACVHVGDLDSG-EWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFD 271

Query: 310 SMLVEPDGAVWGALL 324
           SM  E D   W  ++
Sbjct: 272 SM-GEKDIVTWSTMI 285


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/443 (42%), Positives = 277/443 (62%), Gaps = 10/443 (2%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140
           +  V   +++ Y + G V+  R +FDQ+ EK L+ W+AMISGYA++      L L+ EM+
Sbjct: 13  NLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQ 72

Query: 141 SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
             G+ PD VT + V+S+CA LG       +   +  NG G    +NNALI+MYA+CGNL 
Sbjct: 73  VFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLG 132

Query: 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
            AR +F+ M  + V+SWT++I  + IHG    A++ F +M    I+P+G  FV VL ACS
Sbjct: 133 AARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYACS 192

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320
           HAGL ++G   F  M N++ + P  EHY CMVDL GRA  L +ALEL+E+M + P+  +W
Sbjct: 193 HAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVIW 252

Query: 321 GALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380
           G+L+ AC+IH   EL E A  +V++LEP + G  V LSNIY++ R    +  +R +M++R
Sbjct: 253 GSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQDVGELRNLMKQR 312

Query: 381 RLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE-----HDGTKRSDQ 435
            + K+ G S +EL  +V+ F++ D+ H Q  +IY   +KL+ +V+E     +    RS  
Sbjct: 313 GISKERGCSRIELNNQVYEFVMADKKHKQADKIY---EKLDEVVKELKLVGYTPNTRSVL 369

Query: 436 KNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQ 493
            + EE      V  HSEKLA+ +G++    G+ I ++KNLR+C DCH FIKLVSK+   +
Sbjct: 370 VDVEEEGKKEVVLWHSEKLALCYGLMGEGKGSCIRIVKNLRVCEDCHTFIKLVSKVYGME 429

Query: 494 FIVRDATRFHHFKSGFCSCKDYW 516
            IVRD TRFHH+K+G CSC DYW
Sbjct: 430 IIVRDRTRFHHYKAGVCSCNDYW 452



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 130/248 (52%), Gaps = 6/248 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           VC++A+ISGY  +    EA++LF +M+  G++ + VT+L ++  C   G L      H  
Sbjct: 46  VCWSAMISGYAESDKPQEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMY 105

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K GL     V N L+ MY KCG++   R +F+++  + +I+W +MI+ +A +G A++ 
Sbjct: 106 VDKNGLGGALPVNNALIDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNA 165

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           L+ + +MK   + P+ VTFVGVL +C+H G    G      +  N     P   +   ++
Sbjct: 166 LKFFYQMKDENIKPNGVTFVGVLYACSHAGLVEEGRRTFASM-TNEHNITPKHEHYGCMV 224

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           +++ R   L+ A  + + MP    VV W +++    IHG  E+      ++L+  + PD 
Sbjct: 225 DLFGRANLLRDALELVETMPLAPNVVIWGSLMAACQIHGENELGEFAAKQVLE--LEPDH 282

Query: 250 TAFVSVLS 257
              +  LS
Sbjct: 283 DGALVQLS 290


>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
 gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
          Length = 606

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/510 (38%), Positives = 307/510 (60%), Gaps = 5/510 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T  +N +I GYV N     A+ L+  M ++ VE ++ T   +L  C     +  GM  H 
Sbjct: 97  TFDFNTMIRGYVNNMNFENAIYLYNDMLQREVEPDNFTYPVVLKACARLAVIQEGMQIHG 156

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              K GL+ D  V N L+ MY KC  ++    +F ++ +K + +W+A+I+ +A   +   
Sbjct: 157 HVFKLGLEDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQKSVASWSAIIAAHASLAMWWE 216

Query: 132 VLELYREMKSLGVC-PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
            L L+ +M   G    +    V VLS+C HLGA  +G      +  N    N  +  +L+
Sbjct: 217 CLALFEDMSREGCWRAEESILVNVLSACTHLGAFHLGRCAHGSLLKNITELNVAVMTSLM 276

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MY +CG+L+K   +F  M RK  +S++ II G G+HG+G  A+Q+F EM++ G+ PD  
Sbjct: 277 DMYVKCGSLQKGLCLFQNMTRKNQLSYSVIISGLGLHGYGRQALQIFSEMVEEGLEPDDV 336

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            +VSVLSACSH+GL D+GL+ F  MK +Y ++P  +HY CMVDL GRAG L EA +L++S
Sbjct: 337 TYVSVLSACSHSGLVDEGLDLFDKMKFEYRIEPTMQHYGCMVDLKGRAGLLEEAFQLVQS 396

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M ++ +  +W +LL ACK+H N++L E+A   + +L   N   Y++LSN+Y+ A+  +  
Sbjct: 397 MPIKANDVLWRSLLSACKVHDNLKLGEIAAENLFRLSSHNPSDYLVLSNMYARAQQWENA 456

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH--- 427
            ++R  M  R L + PGYS VE+K +V+ F+  D+++ ++  IY+M+ ++E  ++     
Sbjct: 457 AKIRTKMINRGLIQTPGYSLVEVKSKVYKFVSQDKSYCKSGNIYKMIHQMEWQLRFEGYM 516

Query: 428 -DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
            D ++     + EE     + HS+KLAIAF +I+TS G+ I +++NLR+C DCH + KLV
Sbjct: 517 PDTSQVMLDVDEEEKGERLKGHSQKLAIAFALIHTSQGSAIRIIRNLRMCNDCHSYTKLV 576

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           S I +R+  VRD  RFHHFK G CSC+DYW
Sbjct: 577 SMIYEREITVRDRNRFHHFKDGNCSCRDYW 606



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 160/340 (47%), Gaps = 13/340 (3%)

Query: 70  HCICVKFGLDLD-FSVGNCLMTMYVK-CGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
           H   +KFGL LD F   + L T  +    S+DY   +F Q+ E     +N MI GY  N 
Sbjct: 52  HVQILKFGLFLDSFCSSSVLATCALSDWNSMDYACSIFQQLDEPTTFDFNTMIRGYVNNM 111

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
              + + LY +M    V PD  T+  VL +CA L     G+++   +   G   + ++ N
Sbjct: 112 NFENAIYLYNDMLQREVEPDNFTYPVVLKACARLAVIQEGMQIHGHVFKLGLEDDVYVQN 171

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI-R 246
           +LINMY +C +++ + AIF  M +K+V SW+AII  +         + LF++M + G  R
Sbjct: 172 SLINMYGKCRDIEMSCAIFRRMEQKSVASWSAIIAAHASLAMWWECLALFEDMSREGCWR 231

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
            + +  V+VLSAC+H G    G    +G   K   +      T ++D+  + G L + L 
Sbjct: 232 AEESILVNVLSACTHLGAFHLG-RCAHGSLLKNITELNVAVMTSLMDMYVKCGSLQKGLC 290

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEA 364
           L ++M    +   +  ++    +H     A   F ++++  LEP +  Y  +LS      
Sbjct: 291 LFQNM-TRKNQLSYSVIISGLGLHGYGRQALQIFSEMVEEGLEPDDVTYVSVLSACSHSG 349

Query: 365 RNLDGIMRVRMMMRERRLKKDPGYSY----VELKGRVHLF 400
              +G+     M  E R+  +P   +    V+LKGR  L 
Sbjct: 350 LVDEGLDLFDKMKFEYRI--EPTMQHYGCMVDLKGRAGLL 387


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/544 (37%), Positives = 300/544 (55%), Gaps = 45/544 (8%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T+ Y + I  +    L    ++L   M  +G+   + T+   LP C     L LG   H 
Sbjct: 87  TIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPACRG---LSLGRALHA 143

Query: 72  ICVKFGLDLDFSVGNCLMTMY-------------------------------VKCGSVDY 100
              K  L  D  V   L++MY                                  G++D 
Sbjct: 144 YAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDD 203

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160
            R+LFD +P K  I WNAMI GY Q+G     L+L+R M      PD VT V VLS+ A 
Sbjct: 204 ARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQ 263

Query: 161 LGAHSVGLEVEQQIQ-ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
           LG    G  +   ++ +     N  +  AL++MY +CG+L+ A A+F G+  K +V W A
Sbjct: 264 LGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNA 323

Query: 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279
           +I GY +HG    A+++F ++   G+ P    F+ +L+ACSH+GL ++G  +F  M+++Y
Sbjct: 324 MINGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEY 383

Query: 280 GLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELA 339
           G+ P  EHY CMVDLLGRAG + EA  L++S+ + PD  +W +LL AC++HKN+ L +  
Sbjct: 384 GIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHKNMALGQRI 443

Query: 340 FGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHL 399
              ++     N+G Y+LLSNIY+     + + RVR MM+   ++K+PG S +E+  +V+ 
Sbjct: 444 ADFLVANGLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDRKVYE 503

Query: 400 FMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS-------DQKNSEEHLNDTEVHSEKL 452
           F+ GD +H  T EIY MLDK+  LV+EH    ++       D+   E+ L    VHSEKL
Sbjct: 504 FVAGDMSHPCTDEIYAMLDKMNALVKEHGHVPQTELVLHDLDEATKEKAL---AVHSEKL 560

Query: 453 AIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSC 512
           A+AFG+I++ PG+ I ++KNLR C DCH  +KL+SKI  R+ + RD  RFHHF  G C+C
Sbjct: 561 AVAFGLISSRPGSTIKIVKNLRACSDCHAVLKLISKITSRKIVFRDRNRFHHFVDGSCTC 620

Query: 513 KDYW 516
            DYW
Sbjct: 621 GDYW 624


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/520 (39%), Positives = 299/520 (57%), Gaps = 7/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+  +   +T  +  LISGY  +    +A+ LF +M   G   N  T+  ++      
Sbjct: 108 VFDKMPERDFVT--WTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAE 165

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
                G   H  CVK G D +  VG+ L+ +Y + G +D  + +FD +  +  ++WNA+I
Sbjct: 166 RRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALI 225

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +G+A+       LEL++ M   G  P   ++  +  +C+  G    G  V   +  +G  
Sbjct: 226 AGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEK 285

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
              F  N L++MYA+ G++  AR IFD + ++ VVSW +++  Y  HG G  AV  F+EM
Sbjct: 286 LVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEM 345

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            + GIRP+  +F+SVL+ACSH+GL D+G  Y+  MK K G+     HY  +VDLLGRAG 
Sbjct: 346 RRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMK-KDGIVLEAWHYVTIVDLLGRAGD 404

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           LN AL  IE M +EP  A+W ALL AC++HKN EL   A   V +L+P + G +V+L NI
Sbjct: 405 LNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNI 464

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYR----M 416
           Y+     +   RVR  M+E  +KK+P  S+VE++  +H+F+  D  H Q  EI R    +
Sbjct: 465 YASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEV 524

Query: 417 LDKLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
           L K++ L    D +      + +E   + + HSEK+A+AF ++NT PG+ I + KN+R+C
Sbjct: 525 LAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVC 584

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           GDCH  IKL SK V R+ IVRD  RFHHFK G CSCKDYW
Sbjct: 585 GDCHSAIKLASKAVGREIIVRDTNRFHHFKDGACSCKDYW 624



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 140/278 (50%), Gaps = 2/278 (0%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           LL  C     L  G   H   ++     D  + N L+ MY KCGS++  RK+FD++PE+ 
Sbjct: 57  LLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPERD 116

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
            +TW  +ISGY+Q+      L L+ +M   G  P+  T   V+ + A       G ++  
Sbjct: 117 FVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQLHG 176

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
                GF SN  + +AL+++Y R G +  A+ +FD +  +  VSW A+I G+      E 
Sbjct: 177 FCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEK 236

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
           A++LF  ML+ G RP   ++ S+  ACS  G  ++G ++ +    K G +        ++
Sbjct: 237 ALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQG-KWVHAYMIKSGEKLVAFAGNTLL 295

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           D+  ++G +++A ++ +  L + D   W +LL A   H
Sbjct: 296 DMYAKSGSIHDARKIFDR-LAKRDVVSWNSLLTAYAQH 332



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 93/195 (47%), Gaps = 10/195 (5%)

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF 206
           D   +  +L  C      + G  V   +  + F  +  +NN L+NMYA+CG+L++AR +F
Sbjct: 50  DRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVF 109

Query: 207 DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD 266
           D MP +  V+WT +I GY  H     A+ LF++ML+ G  P+     SV+ A   A    
Sbjct: 110 DKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKA---AAAER 166

Query: 267 KGL--EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
           +G      +G   K G        + ++DL  R G +++A +L+   L   +   W AL+
Sbjct: 167 RGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDA-QLVFDALESRNDVSWNALI 225

Query: 325 GA----CKIHKNVEL 335
                 C   K +EL
Sbjct: 226 AGHARRCGTEKALEL 240


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/539 (37%), Positives = 305/539 (56%), Gaps = 38/539 (7%)

Query: 16  NALISGYVLNSLVSEAVSLFGKM---REQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           N++I  Y  +S  S++   +  +       +  ++ T   L+  C        G+C H  
Sbjct: 78  NSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVTGLCVHGA 137

Query: 73  CVKFGLDLDFSVGNCLMTMYV-------------------------------KCGSVDYG 101
            +K G +LD  V   L+ MY                                KCG +D+ 
Sbjct: 138 VIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKCGDIDFA 197

Query: 102 RKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL 161
           RK+FD++PE+  +TWNAMI+GYAQ G +   L+++  M+  GV  + V+ V VLS+C HL
Sbjct: 198 RKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHL 257

Query: 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
                G  V   ++         L  AL++MYA+CGN+ +A  +F GM  + V +W++ I
Sbjct: 258 QVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAI 317

Query: 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281
           GG  ++G GE ++ LF++M + G++P+G  F+SVL  CS  GL ++G ++F  M+N YG+
Sbjct: 318 GGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMRNVYGI 377

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG 341
            P  EHY  MVD+ GRAG+L EAL  I SM + P    W ALL AC+++KN EL E+A  
Sbjct: 378 GPQLEHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALLHACRMYKNKELGEIAQR 437

Query: 342 KVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFM 401
           K+++LE  N G YVLLSNIY++ +N + +  +R  M+ + +KK PG S +E+ G VH F+
Sbjct: 438 KIVELEDKNDGAYVLLSNIYADYKNWESVSSLRQTMKAKGVKKLPGCSVIEVDGEVHEFI 497

Query: 402 VGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFG 457
           VGD++H +  EI   L+++   ++       ++        EE  +    HSEK+AIAFG
Sbjct: 498 VGDKSHPRYDEIEMKLEEISKCLRLSGYVANTNPVLFDIEEEEKEDALSKHSEKVAIAFG 557

Query: 458 IINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +I+      I V+ NLRIC DCH   K++SKI +R+ IVRD  RFHHFK G CSCKDYW
Sbjct: 558 LISLKGVVPIRVVMNLRICWDCHNVAKMISKIFNREIIVRDRNRFHHFKDGECSCKDYW 616



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 86/272 (31%), Positives = 146/272 (53%), Gaps = 18/272 (6%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +  H+T  +NA+I+GY       EA+ +F  M+ +GV++N V+M+ +L  C   
Sbjct: 200 MFDEMPERDHVT--WNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHL 257

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H    ++ + +  ++G  L+ MY KCG+VD   ++F  + E+ + TW++ I
Sbjct: 258 QVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAI 317

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            G A NG     L+L+ +MK  GV P+ +TF+ VL  C+ +G    G +    ++ N +G
Sbjct: 318 GGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMR-NVYG 376

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGH---GEVA- 233
             P L +   +++MY R G LK+A    + MP R  V +W+A++    ++ +   GE+A 
Sbjct: 377 IGPQLEHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALLHACRMYKNKELGEIAQ 436

Query: 234 ---VQLFDE-----MLKSGIRPDGTAFVSVLS 257
              V+L D+     +L S I  D   + SV S
Sbjct: 437 RKIVELEDKNDGAYVLLSNIYADYKNWESVSS 468



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 118/263 (44%), Gaps = 36/263 (13%)

Query: 97  SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM---KSLGVCPDAVTFVG 153
           ++DY  KL +      L T N+MI  Y+++   +     Y  +    +  + PD  TF  
Sbjct: 58  NLDYANKLLNHNNNPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTF 117

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY-------------------- 193
           ++ +CA L AH  GL V   +  +GF  +P +   L+ MY                    
Sbjct: 118 LVRTCAQLQAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPD 177

Query: 194 -----------ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
                      A+CG++  AR +FD MP +  V+W A+I GY   G    A+ +F  M  
Sbjct: 178 LVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQM 237

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
            G++ +  + V VLSAC+H  + D G  + +    +Y ++      T +VD+  + G ++
Sbjct: 238 EGVKLNEVSMVLVLSACTHLQVLDHG-RWVHAYVERYKVRMTVTLGTALVDMYAKCGNVD 296

Query: 303 EALELIESMLVEPDGAVWGALLG 325
            A+++   M  E +   W + +G
Sbjct: 297 RAMQVFWGM-KERNVYTWSSAIG 318


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/570 (37%), Positives = 311/570 (54%), Gaps = 68/570 (11%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEI-NSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           YN LI G   +   S A+ LF +MR + V + +S +   LL    +   L  G+  HC+ 
Sbjct: 73  YNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQLHCLA 132

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQ-------------------------- 107
           V +GLD    VG  L++MY +C  + + RK+FD+                          
Sbjct: 133 VGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGVKDAE 192

Query: 108 -----VPEKGLITWNAMISGYAQNG---LATHV--------------------------- 132
                +P + L +WN M++GY + G   LA  V                           
Sbjct: 193 QVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFND 252

Query: 133 -LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
               +RE++  G+ P+ V+  GVLS+CA  GA   G  +   ++ +GF     +NNALI+
Sbjct: 253 AFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALID 312

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
            Y++CGNL  AR +FD M R++ VSWTA+I G  +HG+GE A++LF+EM +S I+PD   
Sbjct: 313 TYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSIT 372

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+S+L ACSHAGL D G  YF  M N YG++P  EHY CMVDL GRAG+L +A + +  M
Sbjct: 373 FISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQM 432

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            + P+  VW  LLGAC IH N+ LA     ++ +L+P N+G +VLLSNIY+ A     + 
Sbjct: 433 PISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKWKDVA 492

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
            +R  M  +RLKK PG+S +E+   ++ F+ G++ +   VE ++ L ++ + ++   G  
Sbjct: 493 ALRRSMTHQRLKKTPGWSMIEVNRIIYSFVAGEKQNDIAVEAHQKLREIMSRLRIEGGYV 552

Query: 432 RS-----DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
                       EE  +    HSEKLA+AFG+     G  I V+KNLRIC DCH  +KL+
Sbjct: 553 PEVGSVLHDIEVEEKEDSVSQHSEKLAVAFGMAKLPRGRAIRVVKNLRICRDCHTVMKLI 612

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SK+ + + +VRD +RFH F  G CSC+DYW
Sbjct: 613 SKVYEVEIVVRDRSRFHSFTHGSCSCRDYW 642



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 118/231 (51%), Gaps = 8/231 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++ +I G+  N   ++A + F ++R +G+  N V++  +L  C   G    G   H  
Sbjct: 235 VSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGF 294

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K G     SV N L+  Y KCG++D  R +FD +  +  ++W AMI+G A +G     
Sbjct: 295 VEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEA 354

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           + L+ EM+   + PD++TF+ +L +C+H G   +G     ++  N +G  P + +   ++
Sbjct: 355 IRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRM-VNTYGIEPVIEHYGCMV 413

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGH----GEVAVQL 236
           ++Y R G L++A      MP     + W  ++G   IHG+    G+V  QL
Sbjct: 414 DLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQL 464



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 119/297 (40%), Gaps = 65/297 (21%)

Query: 97  SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC-PDAVTFVGVL 155
           S+ Y R+LF  +    +  +N +I G + +   ++ L+L+ EM+   V  PD+ +F  +L
Sbjct: 54  SLHYARRLFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLL 113

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
            + A+  A + GL++       G  S+ F+   LI+MYA C  L  AR +FD M    +V
Sbjct: 114 KAAANCRALTNGLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIV 173

Query: 216 SWTAII-------------------------------GGYGIHGHGEVAVQLF------- 237
           +W AI+                                GY   G  ++A ++F       
Sbjct: 174 AWNAIVAACFRCEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKD 233

Query: 238 ------------------------DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
                                    E+ + G+RP+  +   VLSAC+ AG  + G    +
Sbjct: 234 DVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFG-RILH 292

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           G   K G          ++D   + G L+ A  + ++ML       W A++    +H
Sbjct: 293 GFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNML-RRSAVSWTAMIAGMAMH 348


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/559 (37%), Positives = 306/559 (54%), Gaps = 47/559 (8%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE   S    V +N +I  Y    LV EA  LF +M++  V  + + +  ++  C   
Sbjct: 168 VFDE--MSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRT 225

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYV--------------------------- 93
           G +      +   ++  + +D  +   L+TMY                            
Sbjct: 226 GNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMV 285

Query: 94  ----KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
               KCG +D  + +FDQ  +K L+ W  MIS Y ++      L ++ EM   G+ PD V
Sbjct: 286 SGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVV 345

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
           +   V+S+CA+LG       V   I  NG  S   +NNALINMYA+CG L   R +F+ M
Sbjct: 346 SMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKM 405

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
           PR+ VVSW+++I    +HG    A+ LF  M +  + P+   FV VL  CSH+GL ++G 
Sbjct: 406 PRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGK 465

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
           + F  M ++Y + P  EHY CMVDL GRA  L EALE+IESM V  +  +WG+L+ AC+I
Sbjct: 466 KIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRI 525

Query: 330 HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYS 389
           H  +EL + A  ++++LEP + G  VL+SNIY+  +  + +  +R +M E+ + K+ G S
Sbjct: 526 HGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLS 585

Query: 390 YVELKGRVHLFMVGDRNHHQTVEIYRMLD------KLENLVQEHDGTKRSDQKNSEEHLN 443
            ++  G+ H F++GD+ H Q+ EIY  LD      KL   V +  G+   D +  EE  +
Sbjct: 586 RIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDC-GSVLVDVE-EEEKKD 643

Query: 444 DTEVHSEKLAIAFGIINTSPGTE------IVVMKNLRICGDCHLFIKLVSKIVDRQFIVR 497
               HSEKLA+ FG++N     E      I ++KNLR+C DCHLF KLVSK+ +R+ IVR
Sbjct: 644 LVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVR 703

Query: 498 DATRFHHFKSGFCSCKDYW 516
           D TRFH +K+G CSC+DYW
Sbjct: 704 DRTRFHCYKNGLCSCRDYW 722



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 172/379 (45%), Gaps = 39/379 (10%)

Query: 5   SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLW 64
           SI S   ++ +N  +     +S     +  + ++R  G  ++  + L +L        L+
Sbjct: 69  SIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALF 128

Query: 65  LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYA 124
            GM  H +  K     D  V    M MY  CG ++Y R +FD++  + ++TWN MI  Y 
Sbjct: 129 EGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYC 188

Query: 125 QNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN------- 177
           + GL     +L+ EMK   V PD +    ++S+C   G       + + +  N       
Sbjct: 189 RFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTH 248

Query: 178 ----------GFG--------------SNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
                     G G               N F++ A+++ Y++CG L  A+ IFD   +K 
Sbjct: 249 LLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKD 308

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
           +V WT +I  Y    + + A+++F+EM  SGI+PD  +  SV+SAC++ G+ DK  ++ +
Sbjct: 309 LVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKA-KWVH 367

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAV--WGALLGACKIHK 331
              +  GL+        ++++  + G L+   ++ E M   P   V  W +++ A  +H 
Sbjct: 368 SCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKM---PRRNVVSWSSMINALSMHG 424

Query: 332 NVELAELAFGKVIK--LEP 348
               A   F ++ +  +EP
Sbjct: 425 EASDALSLFARMKQENVEP 443


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/509 (37%), Positives = 309/509 (60%), Gaps = 6/509 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +  +++ +  +S  SEA+ +  +++++G+ ++S+ +  +L  C     + L    HC 
Sbjct: 434 ISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCY 493

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ GL LD  + N L+ +Y +CG  D+   LF +V +K +++W +MI+    NG     
Sbjct: 494 AIRNGL-LDLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGA 552

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + L+ EM+   + PD+V  V +L + A L + + G +V   +    F     + ++L++M
Sbjct: 553 VFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSSLVDM 612

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y+ CG++  A  +F+    K VV WTA+I   G+HGHG+ A+ LF  ML++G+ PD  +F
Sbjct: 613 YSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSF 672

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +++L ACSH+ L ++G  Y   M +KY L+P  EHY C+VD+LGR+GQ  EA E I++M 
Sbjct: 673 LALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFIKTMP 732

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           ++P  AVW ALLGAC++H+N  LA +A  K+++LEP N G Y+L+SN+++E    +    
Sbjct: 733 MDPKSAVWCALLGACRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFAEMGKWNNAKE 792

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
            R  M ER L+K+P  S++E+   +H F  GD  H  +  I+  L ++  +++   G   
Sbjct: 793 TRTRMAERGLRKNPACSWIEIGNNIHTFTSGDYCHRDSEAIHLKLSEITEMLRREGGYVE 852

Query: 433 SDQ-----KNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
             +      + EE ++    HSE++AIAFG+I+T PG  I + KNLR+CGDCH F KLVS
Sbjct: 853 DTRFVLHDTSEEEKIDMLHKHSERIAIAFGLISTRPGMPIRIAKNLRVCGDCHEFTKLVS 912

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K+ +R  +VRDA RFHHF  G CSC+D+W
Sbjct: 913 KLFERDIVVRDANRFHHFSGGSCSCEDFW 941



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 190/374 (50%), Gaps = 7/374 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N+++S YV NS  +EA+  FG+M + G + +   ++ L         L  G   H  
Sbjct: 333 ISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFHAY 392

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K  L  D  VGN LM MY+KCGS++   K+F+ +  +  I+W  +++ +AQ+   +  
Sbjct: 393 AIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEA 452

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           LE+  E++  G+  D++    +L +C  L + S+  +V      NG   +  L N LI++
Sbjct: 453 LEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGL-LDLILENRLIDI 511

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y  CG    +  +F  + +K +VSWT++I     +G    AV LF EM K+ I+PD  A 
Sbjct: 512 YGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVAL 571

Query: 253 VSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           VS+L A +      KG + + + ++  + ++ GP   + +VD+    G +N A+ + E  
Sbjct: 572 VSILVAIAGLSSLTKGKQVHGFLIRRNFPIE-GPV-VSSLVDMYSGCGSMNYAIRVFERA 629

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDG 369
             + D  +W A++ A  +H + + A   F ++++  L P +  +  LL          +G
Sbjct: 630 KCK-DVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYACSHSKLVEEG 688

Query: 370 IMRVRMMMRERRLK 383
              + +M+ + RLK
Sbjct: 689 KHYLDIMVSKYRLK 702



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 174/365 (47%), Gaps = 12/365 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF+   +       +N+++SG V N    EA++LF  M+  G  +NS T + +L +C + 
Sbjct: 221 VFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAEL 280

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L LG   H   +K G +L+    N L+ MY K G VD   ++F Q+ EK  I+WN+M+
Sbjct: 281 GLLSLGRELHAALLKCGSELNIQC-NALLVMYAKYGRVDSALRVFGQIAEKDYISWNSML 339

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           S Y QN      ++ + EM   G  PD    V + S+  HL   + G E           
Sbjct: 340 SCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLH 399

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           ++  + N L++MY +CG+++ +  +F+ M  +  +SWT I+  +        A+++  E+
Sbjct: 400 TDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILEL 459

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGL---EYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
            K GI  D     S+L  C   GL    L    + Y ++N   L    E+   ++D+ G 
Sbjct: 460 QKEGIMVDSMMIGSILETC--CGLKSISLLKQVHCYAIRNGL-LDLILENR--LIDIYGE 514

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYV 355
            G+ + +L L +  + + D   W +++  C  +  +  A   F ++ K  ++P +     
Sbjct: 515 CGEFDHSLNLFQR-VEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVS 573

Query: 356 LLSNI 360
           +L  I
Sbjct: 574 ILVAI 578



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 158/321 (49%), Gaps = 15/321 (4%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQ---GVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +NAL+  Y+ +    EA+ ++G MR     G   +  T+  +L  C   G    G   H 
Sbjct: 129 WNALVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHG 188

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFD--QVPEKGLITWNAMISGYAQNGLA 129
           + VK GLD    V N L+ MY KCG +D   ++F+  Q   + + +WN+++SG  QNG  
Sbjct: 189 LAVKVGLDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRT 248

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              L L+R M+S G   ++ T V VL  CA LG  S+G E+   +   G   N    NAL
Sbjct: 249 LEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELN-IQCNAL 307

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           + MYA+ G +  A  +F  +  K  +SW +++  Y  +     A+  F EML+ G +PD 
Sbjct: 308 LVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDH 367

Query: 250 TAFVSVLSACSHAGLTDKGLEYF-YGMKNKY--GLQPGPEHYTCMVDLLGRAGQLNEALE 306
              VS+ SA  H    + G E+  Y +K +    LQ G      ++D+  + G +  + +
Sbjct: 368 ACVVSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVG----NTLMDMYIKCGSIECSAK 423

Query: 307 LIESMLVEPDGAVWGALLGAC 327
           + ESM +  D   W  +L AC
Sbjct: 424 VFESMGIR-DHISWTTIL-AC 442



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 120/254 (47%), Gaps = 14/254 (5%)

Query: 79  DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYRE 138
           D D  +   L+ MY +CG VD  R+LF+ +P + + +WNA++  Y  +G A   + +Y  
Sbjct: 92  DDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGA 151

Query: 139 MKSL---GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR 195
           M++    G  PD  T   VL +C   G    G EV       G   +  + NALI MYA+
Sbjct: 152 MRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAK 211

Query: 196 CGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
           CG L  A  +F+ + +  + V SW +++ G   +G    A+ LF  M  +G   +    V
Sbjct: 212 CGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSV 271

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPE---HYTCMVDLLGRAGQLNEALELIES 310
           +VL  C+  GL   G E    +     L+ G E       ++ +  + G+++ AL +   
Sbjct: 272 AVLQVCAELGLLSLGRELHAAL-----LKCGSELNIQCNALLVMYAKYGRVDSALRVF-G 325

Query: 311 MLVEPDGAVWGALL 324
            + E D   W ++L
Sbjct: 326 QIAEKDYISWNSML 339



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 8/186 (4%)

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
           FL   L+ MY RCG +  AR +F+GMP +TV SW A++G Y   G    A++++  M  S
Sbjct: 96  FLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRAS 155

Query: 244 ---GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
              G  PDG    SVL AC   G    G E  +G+  K GL         ++ +  + G 
Sbjct: 156 AAPGSAPDGCTLASVLKACGAEGDGRCGGE-VHGLAVKVGLDKSTLVANALIGMYAKCGL 214

Query: 301 LNEALELIESMLVEP-DGAVWGALLGACKIHKNVELAELAFGKVIKLE--PMNTGYYVLL 357
           L+ AL + E +  +  D A W +++  C +     L  LA  + ++    PMN+   V +
Sbjct: 215 LDSALRVFEWLQQDARDVASWNSVVSGC-VQNGRTLEALALFRGMQSAGFPMNSYTSVAV 273

Query: 358 SNIYSE 363
             + +E
Sbjct: 274 LQVCAE 279


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/552 (39%), Positives = 302/552 (54%), Gaps = 54/552 (9%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N +I  YV N    + + LF ++  + +  N  T+ C++  C   G +  G   H + +
Sbjct: 84  WNTIIKCYVENQFSHDGIVLFHELVHEYLPDN-FTLPCVIKGCARLGVVQEGKQIHGLAL 142

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFD---------------------------- 106
           K G   D  V   L+ MY KCG +D  RK+FD                            
Sbjct: 143 KIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGY 202

Query: 107 --------------QVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFV 152
                         Q+P   L+TWN MI+GY  NG     ++++  M  LG  P   T V
Sbjct: 203 MKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLV 262

Query: 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK 212
            VLS+ + L     G  +   ++ NGF  +  L  +LI MYA+CG ++ A  +F  + +K
Sbjct: 263 SVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKK 322

Query: 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF 272
            V  WTAII G GIHG    A+ LF EM K+G++P+   F+ VL+AC+HAGL D G +YF
Sbjct: 323 KVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYF 382

Query: 273 YGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKN 332
             M N+Y ++P  EHY C+VD+L RAG L EA   IE+M + P+  +W +LLG  + H  
Sbjct: 383 DMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGK 442

Query: 333 VELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVE 392
           +++ E A  +VI++ P   G Y+LLSN+Y+ +   + +  VR MM +R  +KDPG S VE
Sbjct: 443 IDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVE 502

Query: 393 LKGRVHLFMVGDRNHHQTVEIY----RMLDKLENLVQEHDGTKR----SDQKNSEEHLND 444
            KG +H F+VGD +H QT EIY     M +KL+ +    D T+       +K  E  L  
Sbjct: 503 HKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAEL-- 560

Query: 445 TEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHH 504
            E HSE+LAIAFG+IN  PG  I +MKNLR+C DCH   KL+SKI  R+ IVRD  RFHH
Sbjct: 561 -ENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHH 619

Query: 505 FKSGFCSCKDYW 516
           FK+G CSC DYW
Sbjct: 620 FKNGSCSCMDYW 631



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 148/346 (42%), Gaps = 49/346 (14%)

Query: 84  VGNCLMTMYV--KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKS 141
           V + L+ +Y   K   + Y R +FD++  + LI WN +I  Y +N  +   + L+ E+  
Sbjct: 50  VSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVH 109

Query: 142 LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKK 201
               PD  T   V+  CA LG    G ++       GFGS+ F+  +L+NMY++CG +  
Sbjct: 110 -EYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDC 168

Query: 202 ARAIFDGMPRKTV------------------------------------------VSWTA 219
           AR +FDGM  K V                                          V+W  
Sbjct: 169 ARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNL 228

Query: 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279
           +I GY ++G    AV++F  MLK G RP     VSVLSA S   +  KG  + +    K 
Sbjct: 229 MIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKG-RWIHSYMEKN 287

Query: 280 GLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELA 339
           G +      T ++++  + G +  AL +  ++  +  G  W A++    IH     A   
Sbjct: 288 GFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGH-WTAIIVGLGIHGMANHALAL 346

Query: 340 FGKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLK 383
           F ++ K  L+P    +  +L+         DG     MMM E +++
Sbjct: 347 FLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIE 392



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 132/279 (47%), Gaps = 12/279 (4%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +I+GY LN    +AV +F  M + G   +  T++ +L        L  G   H  
Sbjct: 224 VTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSY 283

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K G +LD  +G  L+ MY KCG ++    +F  + +K +  W A+I G   +G+A H 
Sbjct: 284 MEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHA 343

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           L L+ EM   G+ P+A+ F+GVL++C H G    G +    +  N +   P L +   L+
Sbjct: 344 LALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMM-NEYKIEPTLEHYGCLV 402

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGH---GEVAVQLFDEMLKSGIR 246
           ++  R G+L++A+   + MP     V W +++GG   HG    GE A Q   E     + 
Sbjct: 403 DILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIE-----VA 457

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
           P+      +LS    A    + + +   M  K G +  P
Sbjct: 458 PETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDP 496



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 77/146 (52%), Gaps = 5/146 (3%)

Query: 181 SNPFLNNALINMYA--RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
           ++PF+++ L+ +Y+  +  +L  AR+IFD + R++++ W  II  Y  +      + LF 
Sbjct: 46  NHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFH 105

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
           E++   + PD      V+  C+  G+  +G +  +G+  K G          +V++  + 
Sbjct: 106 ELVHEYL-PDNFTLPCVIKGCARLGVVQEGKQ-IHGLALKIGFGSDVFVQGSLVNMYSKC 163

Query: 299 GQLNEALELIESMLVEPDGAVWGALL 324
           G+++ A ++ + M ++ D  +W +L+
Sbjct: 164 GEIDCARKVFDGM-IDKDVVLWNSLI 188


>gi|297720639|ref|NP_001172681.1| Os01g0884800 [Oryza sativa Japonica Group]
 gi|20161229|dbj|BAB90156.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|255673935|dbj|BAH91411.1| Os01g0884800 [Oryza sativa Japonica Group]
          Length = 517

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/516 (38%), Positives = 297/516 (57%), Gaps = 20/516 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V  NA IS      L   A++LF +MR +G+  +  T    LP  ++   L        +
Sbjct: 10  VACNAAISRCSRAGLHRRALALFTEMRARGLRADEYT----LPPILNSAALLRAPPAAAL 65

Query: 73  CVKFGLDLDFS---VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
                     S   V N L+  Y K   +   R +FD++P + ++TW ++++G A+ G  
Sbjct: 66  HALLLRAGLASHLHVANALVDAYAKLSRLGAARAVFDEMPRRDVVTWTSLVTGLARAGSH 125

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF--GSNPFLN- 186
              +  YR+M + GV  D      VLSSCA     S  LE+ + + A     G  PFL+ 
Sbjct: 126 GLAVRAYRDMVAAGVATDEFAVAAVLSSCAG----STALELGRSVHAAAVRSGHEPFLSV 181

Query: 187 -NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
            N+L++MYA+ G+L+ AR +FD M  +  ++WTA+I GY  +G G  ++ ++ +M +SG 
Sbjct: 182 GNSLVSMYAKTGSLRDARTVFDAMRSRCAITWTALIVGYAQNGRGRESLAVYADMARSGC 241

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
           RPD   FV +L ACSHAGL D G  +F  M++++G+ PGP+HY CMVDLLGRAG+L EA+
Sbjct: 242 RPDYVTFVGLLFACSHAGLLDAGRAHFQSMQSEHGISPGPDHYACMVDLLGRAGRLGEAV 301

Query: 306 ELIE-SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEA 364
           +L++ S   E D  VW ALL AC+ H+N  LAE A G V +L+P +   YV+LSN+YS A
Sbjct: 302 DLLDRSPAAELDATVWKALLAACRTHRNAALAERAAGMVWRLDPTDAMPYVMLSNLYSRA 361

Query: 365 RNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLV 424
           R    + RVR +MR R + K+PG S+V + G  H+F  GDR+H +  EIYR  +++   +
Sbjct: 362 RRWGDVARVRALMRSRGISKEPGCSWVVVAGVTHVFHAGDRDHQRAAEIYRKAEEMAARI 421

Query: 425 QEHDGTKRSDQKNSEEHLNDTEV----HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCH 480
           +       ++    +E     E+    H E+LA+AFG++       I V KNLR+CGDCH
Sbjct: 422 RARGHVPDTEWALQDEAPEGREMGLAHHGERLAVAFGLLAVPAAAPIRVYKNLRVCGDCH 481

Query: 481 LFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
             IK+V+++  R+ I+RD+  FHH K G CSC DYW
Sbjct: 482 AAIKMVAEVYGREIILRDSNCFHHMKDGSCSCGDYW 517



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 104/201 (51%), Gaps = 2/201 (0%)

Query: 111 KGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEV 170
           KGL+  NA IS  ++ GL    L L+ EM++ G+  D  T   +L+S A L        +
Sbjct: 7   KGLVACNAAISRCSRAGLHRRALALFTEMRARGLRADEYTLPPILNS-AALLRAPPAAAL 65

Query: 171 EQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHG 230
              +   G  S+  + NAL++ YA+   L  ARA+FD MPR+ VV+WT+++ G    G  
Sbjct: 66  HALLLRAGLASHLHVANALVDAYAKLSRLGAARAVFDEMPRRDVVTWTSLVTGLARAGSH 125

Query: 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC 290
            +AV+ + +M+ +G+  D  A  +VLS+C+ +   + G    +    + G +P       
Sbjct: 126 GLAVRAYRDMVAAGVATDEFAVAAVLSSCAGSTALELG-RSVHAAAVRSGHEPFLSVGNS 184

Query: 291 MVDLLGRAGQLNEALELIESM 311
           +V +  + G L +A  + ++M
Sbjct: 185 LVSMYAKTGSLRDARTVFDAM 205


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/543 (37%), Positives = 308/543 (56%), Gaps = 39/543 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +N++ISGY        A+ +F KM R+  +  +  T+  +L  C +   L +G   H 
Sbjct: 244 VTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHS 303

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKL--------------------------- 104
             V  G D+   V N L++MY +CG V+  R+L                           
Sbjct: 304 HIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDM 363

Query: 105 ------FDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC 158
                 FD + ++ ++ W AMI GY Q+GL    + L+R M      P++ T   +LS  
Sbjct: 364 NEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVA 423

Query: 159 AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP-RKTVVSW 217
           + L +   G ++      +G   +  ++NALI MYA+ G++  A   FD +   +  VSW
Sbjct: 424 SSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSW 483

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
           T++I     HGH E A++LF+ ML  G+RPD   +V V SAC+HAGL ++G +YF  MK+
Sbjct: 484 TSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKD 543

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
              + P   HY CMVDL GRAG L EA E IE M +EPD   WG+LL AC+++KN++L +
Sbjct: 544 VDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGK 603

Query: 338 LAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRV 397
           +A  +++ LEP N+G Y  L+N+YS     +   ++R  M++ R+KK+ G+S++E+K +V
Sbjct: 604 VAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKV 663

Query: 398 HLFMVGDRNHHQTVEIYRMLDKLENLVQE--HDGTKRSDQKNSEEHLNDTEV--HSEKLA 453
           H F V D  H Q  EIY  + K+ + +++  +     S   + EE + +  +  HSEKLA
Sbjct: 664 HAFGVEDGIHPQKNEIYITMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLA 723

Query: 454 IAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCK 513
           IAFG+I+T   T + +MKNLR+C DCH  IK +SK+V R+ IVRD TRFHHFK GFCSC+
Sbjct: 724 IAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCR 783

Query: 514 DYW 516
           DYW
Sbjct: 784 DYW 786



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 114/416 (27%), Positives = 170/416 (40%), Gaps = 101/416 (24%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V +  +I GY       +A+ + G+M  +G+E +  T+  +L        L  G   H 
Sbjct: 111 SVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHS 170

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKC-------------------------------GSVDY 100
             VK GL  + SV N L+ MY KC                               G +D 
Sbjct: 171 FIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDL 230

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM-KSLGVCPDAVTFVGVLSSCA 159
               F+Q+ E+ ++TWN+MISGY Q G     L+++ +M +   + PD  T   VLS+CA
Sbjct: 231 AMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACA 290

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARA--------------- 204
           +L    +G ++   I   GF  +  + NALI+MY+RCG ++ AR                
Sbjct: 291 NLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGF 350

Query: 205 ------------------IFDGMPRKTVVSWTAIIGGYGIHG-HGEVAVQLFDEMLKSGI 245
                             IFD +  + VV+WTA+I GY  HG +GE A+ LF  M+    
Sbjct: 351 TALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGE-AINLFRSMVGEEQ 409

Query: 246 RPDGTAFVSVLSACS-----------HAGLTDKGLEYFYGMKN-------KYGLQPGPEH 287
           RP+     ++LS  S           H      G  Y   + N       K G       
Sbjct: 410 RPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASR 469

Query: 288 -------------YTCMVDLLGRAGQLNEALELIESMLVE---PDGAVWGALLGAC 327
                        +T M+  L + G   EALEL E+ML+E   PD   +  +  AC
Sbjct: 470 AFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSAC 525



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 130/309 (42%), Gaps = 65/309 (21%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N +++ Y K G +D   + FD++P++  ++W  MI GY   G     + +  EM   G+ 
Sbjct: 84  NTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIE 143

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P   T   VL+S A       G +V   I   G   N  ++N+L+NMYA+CG+   A+ +
Sbjct: 144 PSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVV 203

Query: 206 FD-------------------------------GMPRKTVVSWTAIIGGYGIHGHGEVAV 234
           FD                                M  + +V+W ++I GY   G+   A+
Sbjct: 204 FDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRAL 263

Query: 235 QLFDEMLK-SGIRPDGTAFVSVLSACS-----------HAGLTDKG-------LEYFYGM 275
            +F +ML+ S + PD     SVLSAC+           H+ +   G       L     M
Sbjct: 264 DMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISM 323

Query: 276 KNKYG---------LQPGP-----EHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWG 321
            ++ G          Q G      E +T ++D   + G +NEA  + +S L + D   W 
Sbjct: 324 YSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDS-LKDRDVVAWT 382

Query: 322 ALLGACKIH 330
           A++   + H
Sbjct: 383 AMIVGYEQH 391



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/281 (19%), Positives = 110/281 (39%), Gaps = 45/281 (16%)

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLE--------VEQQIQANGFGSNPFLNNALINMYARC 196
            P  ++   +L  C +L   SV           V  ++  +G   + +L N L+N+Y++ 
Sbjct: 3   APVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKT 62

Query: 197 GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD------------------ 238
           G    AR +FD MP +T  SW  ++  Y   G  + + + FD                  
Sbjct: 63  GYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYK 122

Query: 239 -------------EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
                        EM++ GI P      +VL++ +     + G +  +    K GL+   
Sbjct: 123 NIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETG-KKVHSFIVKLGLRGNV 181

Query: 286 EHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345
                ++++  + G    A  + + M+V+ D + W A++    +H  V   +LA  +  +
Sbjct: 182 SVSNSLLNMYAKCGDPMMAKVVFDRMVVK-DISSWNAMIA---LHMQVGQMDLAMAQFEQ 237

Query: 346 LEPMN-TGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKD 385
           +   +   +  ++S       +L  +     M+R+  L  D
Sbjct: 238 MAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPD 278


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/522 (39%), Positives = 293/522 (56%), Gaps = 8/522 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  K       +N L  GYV N L  E++ L+ KMR+ GV  +  T   ++      
Sbjct: 65  VFDEMHKPR--IFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQL 122

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G    G   H   VK+G      V   L+ MY+K G +     LF+ +  K L+ WNA +
Sbjct: 123 GDFSCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFL 182

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +   Q G +   LE + +M +  V  D+ T V +LS+C  LG+  +G E+  + +     
Sbjct: 183 AVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEID 242

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            N  + NA ++M+ +CGN + AR +F+ M ++ VVSW+ +I GY ++G    A+ LF  M
Sbjct: 243 CNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTM 302

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM--KNKYGLQPGPEHYTCMVDLLGRA 298
              G+RP+   F+ VLSACSHAGL ++G  YF  M   N   L+P  EHY CMVDLLGR+
Sbjct: 303 QNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRS 362

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           G L EA E I+ M VEPD  +WGALLGAC +H+++ L +     +++  P    Y+VLLS
Sbjct: 363 GLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLS 422

Query: 359 NIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD 418
           NIY+ A   D + +VR  MR+   KK   YS VE +G++H F  GD++H Q+  IY  LD
Sbjct: 423 NIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLD 482

Query: 419 KLENLVQE----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLR 474
           ++   +++     D          EE       HSEKLAIAFG+I   PG  I VMKNLR
Sbjct: 483 EILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLR 542

Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            C DCH F K VS +   + I+RD  RFHHF++G CSCK++W
Sbjct: 543 TCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 102/203 (50%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H I ++ G     S+   L+   V  G + Y R++FD++ +  +  WN +  GY +N L 
Sbjct: 31  HAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQLP 90

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              L LY++M+ LGV PD  T+  V+ + + LG  S G  +   +   GFG    +   L
Sbjct: 91  FESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVATEL 150

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           + MY + G L  A  +F+ M  K +V+W A +      G+  +A++ F++M    ++ D 
Sbjct: 151 VMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDS 210

Query: 250 TAFVSVLSACSHAGLTDKGLEYF 272
              VS+LSAC   G  + G E +
Sbjct: 211 FTVVSMLSACGQLGSLEIGEEIY 233


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/522 (39%), Positives = 310/522 (59%), Gaps = 9/522 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE +    LT  +NA+I+G +      E +SLF +M   G   +  T+  +       
Sbjct: 47  VFDE-MPDRKLTT-WNAMIAGLIQFEYNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGL 104

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             + +G   H   +K+GL+LD  V + L  MY++ G +  G  +   +P + L+ WN +I
Sbjct: 105 RSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLI 164

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            G AQNG    VL LY+ MK  G  P+ +TFV VLSSC+ L     G ++  +    G  
Sbjct: 165 MGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGAS 224

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S   + ++LI+MY++CG L  A   F     +  V W+++I  YG HG G+ A++LF+ M
Sbjct: 225 SVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIKLFNSM 284

Query: 241 L-KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
             ++ +  +  AF+++L ACSH+GL DKGLE F  M  KYG +PG +HYTC+VDLLGRAG
Sbjct: 285 AEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAG 344

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
            L++A  +I+SM ++PD  +W  LL AC IHKN E+A+  F ++++++P ++  YVLL+N
Sbjct: 345 CLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQKVFKEILEIDPNDSACYVLLAN 404

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
           +++ A+    +  VR  MR++ +KK+ G S+ E KG VH F +GDR+  ++ EIY  L +
Sbjct: 405 VHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKE 464

Query: 420 LENLVQEHDGTKRSDQK-----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLR 474
           L  L  +  G K          + EE  +D   HSEKLA+AF ++    G  I ++KNLR
Sbjct: 465 L-TLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLR 523

Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +C DCH+  K +S I++R+  +RD +RFHHF +G CSC DYW
Sbjct: 524 VCSDCHVAFKYISVIMNREITLRDGSRFHHFINGKCSCGDYW 565



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 135/282 (47%), Gaps = 2/282 (0%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140
           +F   N L+  YV+ G +   RK+FD++P++ L TWNAMI+G  Q       L L+REM 
Sbjct: 24  NFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQFEYNEEGLSLFREMH 83

Query: 141 SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
            LG  PD  T   V S  A L + S+G ++       G   +  +N++L +MY R G L+
Sbjct: 84  GLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQ 143

Query: 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
               +   MP + +V+W  +I G   +G  E  + L+  M  SG RP+   FV+VLS+CS
Sbjct: 144 DGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCS 203

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320
              +  +G +  +    K G        + ++ +  + G L +A +   S   + D  +W
Sbjct: 204 DLAIRGQG-QQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAF-SEREDEDEVMW 261

Query: 321 GALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362
            +++ A   H   + A   F  + +   M       L+ +Y+
Sbjct: 262 SSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYA 303



 Score = 46.6 bits (109), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 66/167 (39%), Gaps = 35/167 (20%)

Query: 190 INMYARCGNLK-------------------------------KARAIFDGMPRKTVVSWT 218
           ++MY++ G+L                                 AR +FD MP + + +W 
Sbjct: 1   MSMYSKLGDLPSAVALYERMRKKNFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWN 60

Query: 219 AIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL-EYFYGMKN 277
           A+I G     + E  + LF EM   G  PD     SV S    AGL    + +  +G   
Sbjct: 61  AMIAGLIQFEYNEEGLSLFREMHGLGFSPDEYTLGSVFSGS--AGLRSVSIGQQIHGYAI 118

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
           KYGL+      + +  +  R G+L +   +I SM V  +   W  L+
Sbjct: 119 KYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVR-NLVAWNTLI 164


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/506 (38%), Positives = 295/506 (58%), Gaps = 5/506 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           + +LI+GY  N +  EA+ L   M     + N  T   LL          +G   H + V
Sbjct: 133 WTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTV 192

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K+    D  VG+ L+ MY +CG +D    +FDQ+  K  ++WNA+I+G+A+ G     L 
Sbjct: 193 KYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLL 252

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           ++ EM+  G      T+  V S+ A +GA   G  V   +  +G   + F+ N +++MYA
Sbjct: 253 MFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYA 312

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           + G++  AR +FD + +K VV+W +++  +  +G G  AV  F+EM K G+  +   F+S
Sbjct: 313 KSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLS 372

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           +L+ACSH GL  +G +YF  MK +Y L+P  +HY  +VDLLGRAG LN+AL  I  M ++
Sbjct: 373 ILTACSHGGLVKEGKQYFDMMK-EYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMK 431

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
           P  AVWGALLG+C++HKN ++ + A   V +L+P +TG  VLL NIY+     D   RVR
Sbjct: 432 PTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVR 491

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD 434
            MM+   +KK+P  S+VE++  VH+F+  D  H ++ EIY+  +++   +++      +D
Sbjct: 492 KMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTD 551

Query: 435 ----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIV 490
                 + +E     + HSEK+A+AF +IN   G  I +MKN+RICGDCH   + +SK+ 
Sbjct: 552 YVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVF 611

Query: 491 DRQFIVRDATRFHHFKSGFCSCKDYW 516
            R+ +VRD  RFHHF SG CSC DYW
Sbjct: 612 KREIVVRDTNRFHHFSSGSCSCGDYW 637



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 125/241 (51%), Gaps = 2/241 (0%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+ +Y KCG+V   R++FD +P + + +W ++I+GYAQN +    L L   M      
Sbjct: 103 NSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFK 162

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P+  TF  +L +     +  +G ++        +  + ++ +AL++MYARCG +  A A+
Sbjct: 163 PNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAV 222

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           FD +  K  VSW A+I G+   G GE  + +F EM ++G       + SV SA +  G  
Sbjct: 223 FDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGAL 282

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           ++G ++ +    K G +        ++D+  ++G + +A ++ +  + + D   W ++L 
Sbjct: 283 EQG-KWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDR-VDKKDVVTWNSMLT 340

Query: 326 A 326
           A
Sbjct: 341 A 341



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 119/241 (49%), Gaps = 7/241 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NALI+G+         + +F +M+  G E    T   +       G L  G   H  
Sbjct: 232 VSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAH 291

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G  L   VGN ++ MY K GS+   RK+FD+V +K ++TWN+M++ +AQ GL    
Sbjct: 292 MIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREA 351

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           +  + EM+  GV  + +TF+ +L++C+H G    G +    ++   +   P +++   ++
Sbjct: 352 VTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKE--YNLEPEIDHYVTVV 409

Query: 191 NMYARCGNLKKARAIFDGMPRK-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++  R G L  A      MP K T   W A++G   +H + ++     D + +  + PD 
Sbjct: 410 DLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFE--LDPDD 467

Query: 250 T 250
           T
Sbjct: 468 T 468



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 103/209 (49%), Gaps = 4/209 (1%)

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
           ++++CA   +      +   +  + F  + FL+N+LI++Y +CG +  AR +FDGMP + 
Sbjct: 70  LITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARD 129

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
           + SWT++I GY  +   + A+ L   ML+   +P+G  F S+L A   +  +  G E  +
Sbjct: 130 MCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIG-EQIH 188

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNV 333
            +  KY         + ++D+  R G+++ A+ + +  L   +G  W AL+       + 
Sbjct: 189 ALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQ-LESKNGVSWNALIAGFARKGDG 247

Query: 334 ELAELAFGKVIK--LEPMNTGYYVLLSNI 360
           E   L F ++ +   E  +  Y  + S I
Sbjct: 248 ETTLLMFAEMQRNGFEATHFTYSSVFSAI 276


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/508 (38%), Positives = 290/508 (57%), Gaps = 3/508 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +  ++ GY       +A++LF KM  +GVE++      +L  C     L  G   H 
Sbjct: 177 AVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHG 236

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             VK GL+ + SVG  L+  YVKC +++   K F+ + E   ++W+A+I+GY Q G    
Sbjct: 237 HIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEE 296

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L+ +  +++  V  ++ T+  +  +C+ L   + G +       +   +     +A+I 
Sbjct: 297 ALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESAMIT 356

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY+RCG L  A  +F+ +     V+WTAII GY   G+   A++LF  M   G+RP+   
Sbjct: 357 MYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRPNAVT 416

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F++VL+ACSH+GL  +G +Y   M + YG+    +HY CMVD+  RAG L EALELI SM
Sbjct: 417 FIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALELIRSM 476

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
              PD   W  LLG C  ++N+E+ ELA   + +L+P +T  Y+L+ N+Y+         
Sbjct: 477 PFSPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLDPEDTAGYILMFNLYASFGKWKEAA 536

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL-ENLVQEHDG- 429
            VR MM ER L+K+   S++ +KG+VH F+VGD++H QT EIY  L+ L +++++E  G 
Sbjct: 537 NVRKMMAERNLRKELSCSWITVKGKVHRFIVGDKHHPQTEEIYSKLEALNDSVIKEETGL 596

Query: 430 TKRSDQKNS-EEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
               D  NS  E      VHSE+LA+AFG+I+T     +VV KNLR C DCH F K VS 
Sbjct: 597 LTEEDVSNSLPERKEQLLVHSERLALAFGLISTPSSAPVVVFKNLRACKDCHDFGKQVSL 656

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           I  R+ +VRD+ RFHHFK G CSC DYW
Sbjct: 657 ITGREIVVRDSFRFHHFKLGECSCNDYW 684



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/294 (30%), Positives = 144/294 (48%), Gaps = 5/294 (1%)

Query: 38  MREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS 97
           M + G+ ++  +  CL   C     L+ G   H    +   +    + N ++ MY KCGS
Sbjct: 1   MEDAGISVSPRSYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGS 60

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
           +   RK+FD++ E+ L++WN +IS YA+NG+      ++  M  L   P+  T++G L S
Sbjct: 61  LADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRS 120

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
             +     +G ++      +G GSN  +N A+ NMY +CG L+ A  +F+ M  K  V+W
Sbjct: 121 LLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAW 180

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL-EYFYGMK 276
           T I+ GY        A+ LF +M+  G+  D   F  VL AC  AGL +       +G  
Sbjct: 181 TGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKAC--AGLEELNFGRQIHGHI 238

Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL-GACKI 329
            K GL+      T +VD   +   L  A +  E  + EP+   W AL+ G C++
Sbjct: 239 VKLGLESEVSVGTPLVDFYVKCSNLESATKAFE-WISEPNDVSWSALITGYCQM 291



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 155/336 (46%), Gaps = 4/336 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE ++  +L V +N +IS Y  N +  +   +F  M E   + N  T +  L   ++P
Sbjct: 67  VFDE-MRERNL-VSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNP 124

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L +G   H   ++ GL  + SV   +  MYVKCG ++    +F+++ EK  + W  ++
Sbjct: 125 SGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIM 184

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GY Q       L L+ +M + GV  D   F  VL +CA L   + G ++   I   G  
Sbjct: 185 VGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLE 244

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S   +   L++ Y +C NL+ A   F+ +     VSW+A+I GY   G  E A++ F+ +
Sbjct: 245 SEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESL 304

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
               +  +   + S+  ACS     + G +  +    K  L       + M+ +  R G+
Sbjct: 305 RTRSVDINSFTYTSIFQACSALADFNSGAQA-HADAIKSSLVAYQHGESAMITMYSRCGR 363

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELA 336
           L+ A  + ES + +PD   W A++       N   A
Sbjct: 364 LDYATRVFES-IDDPDAVAWTAIIAGYAYQGNAPEA 398


>gi|356495778|ref|XP_003516750.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 765

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/513 (37%), Positives = 296/513 (57%), Gaps = 13/513 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V    L+ GY   +   +A+ LFGKM  +GVE++      +L  C   G L+ G   H 
Sbjct: 258 AVACTGLMVGYTKAARNRDALLLFGKMISEGVELDGFVFSIILKACAALGDLYTGKQIHS 317

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
            C+K GL+ + SVG  L+  YVKC   +  R+ F+ + E    +W+A+I+GY Q+G    
Sbjct: 318 YCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIHEPNDFSWSALIAGYCQSGQFDR 377

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            LE+++ ++S GV  ++  +  +  +C+ +     G ++       G  +     +A+I+
Sbjct: 378 ALEVFKAIRSKGVLLNSFIYTNIFQACSAVSDLICGAQIHADAIKKGLVAYLSGESAMIS 437

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY++CG +  A   F  + +   V+WTAII  +  HG    A++LF EM  SG+RP+   
Sbjct: 438 MYSKCGQVDYAHQAFLTIDKPDTVAWTAIICAHAYHGKAFEALRLFKEMQGSGVRPNAVT 497

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+ +L+ACSH+GL  +G +    M ++YG+ P  +HY CM+D+  RAG L EALE+I S+
Sbjct: 498 FIGLLNACSHSGLVKEGKKILDSMSDEYGVNPTIDHYNCMIDVYSRAGLLQEALEVIRSL 557

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
             EPD   W +LLG C  H+N+E+  +A   + +L+P+++  YV++ N+Y+ A   D   
Sbjct: 558 PFEPDVMSWKSLLGGCWSHRNLEIGMIAADNIFRLDPLDSATYVIMFNLYALAGKWDEAA 617

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL--------ENL 423
           + R MM ER L+K+   S++ +KG+VH F+VGDR+H QT +IY  L +L        E L
Sbjct: 618 QFRKMMAERNLRKEVSCSWIIVKGKVHRFVVGDRHHPQTEQIYSKLKELNFSFKKSKERL 677

Query: 424 VQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFI 483
           + E +     D    +E L D   HSE+LAIA+G+I T+  T I+V KN R C DCH F 
Sbjct: 678 LNEENAL--CDFTERKEQLLD---HSERLAIAYGLICTAADTPIMVFKNTRSCKDCHDFA 732

Query: 484 KLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K VS +  R+ +VRD  RFHH  SG CSC+DYW
Sbjct: 733 KRVSIVTGRELVVRDGNRFHHINSGECSCRDYW 765



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 140/316 (44%), Gaps = 2/316 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           ++ +IS Y     + EAV LF +M + G+  NS     L+    DP  L LG   H   +
Sbjct: 160 WSTIISAYTEEGRIDEAVRLFLRMLDLGITPNSSIFSTLIMSFTDPSMLDLGKQIHSQLI 219

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           + G   + S+   +  MYVKCG +D      +++  K  +    ++ GY +       L 
Sbjct: 220 RIGFAANISIETLISNMYVKCGWLDGAEVATNKMTRKNAVACTGLMVGYTKAARNRDALL 279

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+ +M S GV  D   F  +L +CA LG    G ++       G  S   +   L++ Y 
Sbjct: 280 LFGKMISEGVELDGFVFSIILKACAALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYV 339

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +C   + AR  F+ +      SW+A+I GY   G  + A+++F  +   G+  +   + +
Sbjct: 340 KCARFEAARQAFESIHEPNDFSWSALIAGYCQSGQFDRALEVFKAIRSKGVLLNSFIYTN 399

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           +  ACS       G +  +    K GL       + M+ +  + GQ++ A +   + + +
Sbjct: 400 IFQACSAVSDLICGAQ-IHADAIKKGLVAYLSGESAMISMYSKCGQVDYAHQAFLT-IDK 457

Query: 315 PDGAVWGALLGACKIH 330
           PD   W A++ A   H
Sbjct: 458 PDTVAWTAIICAHAYH 473



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 149/334 (44%), Gaps = 13/334 (3%)

Query: 5   SIKSTHLTVCYNALISGYVLN-SLVS--------EAVSLFGKMREQGVEINSVTMLCLLP 55
           S+KS+H ++  +    G V N  L+S        E       M + G+ IN  +   L  
Sbjct: 41  SLKSSHSSLRTHQNQQGQVENLHLISLAKQGNLREVHEFIRNMDKVGISINPRSYEYLFK 100

Query: 56  ICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT 115
           +C   G L  G   H    +      F + NC++ MY  C S     + FD++ ++ L +
Sbjct: 101 MCGTLGALSDGKLFHNRLQRMANSNKF-IDNCILKMYCDCKSFTSAERFFDKIVDQDLSS 159

Query: 116 WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175
           W+ +IS Y + G     + L+  M  LG+ P++  F  ++ S        +G ++  Q+ 
Sbjct: 160 WSTIISAYTEEGRIDEAVRLFLRMLDLGITPNSSIFSTLIMSFTDPSMLDLGKQIHSQLI 219

Query: 176 ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQ 235
             GF +N  +   + NMY +CG L  A    + M RK  V+ T ++ GY        A+ 
Sbjct: 220 RIGFAANISIETLISNMYVKCGWLDGAEVATNKMTRKNAVACTGLMVGYTKAARNRDALL 279

Query: 236 LFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295
           LF +M+  G+  DG  F  +L AC+  G    G +  +    K GL+      T +VD  
Sbjct: 280 LFGKMISEGVELDGFVFSIILKACAALGDLYTGKQ-IHSYCIKLGLESEVSVGTPLVDFY 338

Query: 296 GRAGQLNEALELIESMLVEPDGAVWGALL-GACK 328
            +  +   A +  ES + EP+   W AL+ G C+
Sbjct: 339 VKCARFEAARQAFES-IHEPNDFSWSALIAGYCQ 371


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/559 (38%), Positives = 306/559 (54%), Gaps = 47/559 (8%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+  K     V +N +I  YVLN    EA+ L+ K+  +G +    T + +L  C   
Sbjct: 264 VFDKMKKRD--MVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSV 321

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVD--------------------- 99
             L  G   H   ++ GLD + +V   L+ MY KCGS++                     
Sbjct: 322 KALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLI 381

Query: 100 -------YG------RKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK-SLGVC 145
                  YG      RK+FD++  +  I+WNAMI+ Y QNG A   ++++REM  + G+ 
Sbjct: 382 GAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLK 441

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           PDAVTF+ VL +CA LG  S    +  QI  +   SN  + N LINMYARCG+L++A  +
Sbjct: 442 PDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERL 501

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           F     KTVVSWTA++  +  +G    A+ LF EM   G++PD   + S+L  C+H G  
Sbjct: 502 FAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSL 561

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           ++G  YF  M   + L P  +H+  MVDLLGR+G+L +A EL+ESM  EPD   W   L 
Sbjct: 562 EQGWRYFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLT 621

Query: 326 ACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKD 385
           AC+IH  +EL E A  +V +L+P +T  Y+ +SNIY+     + +  VR  M ER LKK 
Sbjct: 622 ACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKL 681

Query: 386 PGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDT 445
           PG S++E+ G++H F  G + H +T EI   L +L  L++        D K     +++ 
Sbjct: 682 PGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMRA--AGYVPDTKAVLHDVSEG 739

Query: 446 E------VHSEKLAIAFGIINTS-PGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRD 498
           E       HSEK+AIAFG++++   G  I V+KNLR+C DCH   K +++I  R  IVRD
Sbjct: 740 EKETMLLYHSEKMAIAFGLVSSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIIVRD 799

Query: 499 ATRFHHFKS-GFCSCKDYW 516
             RFH F S G CSC DYW
Sbjct: 800 CNRFHRFSSDGKCSCGDYW 818



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 166/314 (52%), Gaps = 6/314 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+I+ Y  N   +EA+ L+ +M  QG+  + VT + +L  C     L  G   H  
Sbjct: 76  VSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGAC---SSLAQGREIHNR 132

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               GLD   S+ N L+TMY + GSV   +++F  +  +   +WNA+I  ++Q+G  +  
Sbjct: 133 VFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGA 192

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L +++EMK   V P++ T++ V+S  +       G ++  +I ANGF ++  +  ALINM
Sbjct: 193 LRIFKEMK-CDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINM 251

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CG+  +AR +FD M ++ +VSW  +IG Y ++G    A++L+ ++   G +     F
Sbjct: 252 YGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATF 311

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           VS+L ACS      +G    +    + GL       T +V++  + G L EA ++  +M 
Sbjct: 312 VSILGACSSVKALAQG-RLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAM- 369

Query: 313 VEPDGAVWGALLGA 326
              D   W  L+GA
Sbjct: 370 KNRDAVAWSTLIGA 383



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 174/387 (44%), Gaps = 69/387 (17%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           T     +NA+I  +  +   S A+ +F +M+   V+ NS T + ++     P  L  G  
Sbjct: 170 TRDETSWNAVILAHSQSGDWSGALRIFKEMKCD-VKPNSTTYINVISGFSTPEVLPEGRK 228

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            H   V  G D D  V   L+ MY KCGS    R++FD++ ++ +++WN MI  Y  NG 
Sbjct: 229 IHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGD 288

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
               LELY+++   G      TFV +L +C+ + A + G  V   I   G  S   +  A
Sbjct: 289 FHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATA 348

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGE----------------- 231
           L+NMYA+CG+L++AR +F+ M  +  V+W+ +IG Y  +G+G+                 
Sbjct: 349 LVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDT 408

Query: 232 -----------------VAVQLFDEML-KSGIRPDGTAFVSVLSACS-----------HA 262
                             A+++F EM   +G++PD   F++VL AC+           HA
Sbjct: 409 ISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHA 468

Query: 263 GLTDKGLE-------YFYGMKNKYGLQPGPEH------------YTCMVDLLGRAGQLNE 303
            +++  LE           M  + G     E             +T MV    + G+  E
Sbjct: 469 QISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAE 528

Query: 304 ALELIESMLVE---PDGAVWGALLGAC 327
           AL+L + M +E   PD   + ++L  C
Sbjct: 529 ALDLFQEMDLEGVKPDDVTYTSILFVC 555



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 149/284 (52%), Gaps = 12/284 (4%)

Query: 46  NSVTMLCLLPICVDPGYLWLGMCCH--CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRK 103
           ++VT L +L  C   G +  G   H    C +F  + D  VGN L++MY KC S+   R 
Sbjct: 6   DNVTFLTVLCSCSSCGDVVEGRALHERIRCSRF--ERDTMVGNALISMYGKCDSLVDARS 63

Query: 104 LFDQVP--EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL 161
           +F+ +   ++ +++WNAMI+ YAQNG +T  L LY  M   G+  D VTFV VL +C+ L
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
                G E+  ++  +G  S   L NAL+ MYAR G++  A+ +F  +  +   SW A+I
Sbjct: 124 AQ---GREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVI 180

Query: 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281
             +   G    A+++F EM K  ++P+ T +++V+S  S   +  +G +  +      G 
Sbjct: 181 LAHSQSGDWSGALRIFKEM-KCDVKPNSTTYINVISGFSTPEVLPEGRK-IHAEIVANGF 238

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
                  T ++++ G+ G  +EA E+ + M  + D   W  ++G
Sbjct: 239 DTDLVVATALINMYGKCGSSHEAREVFDKM-KKRDMVSWNVMIG 281



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 94/189 (49%), Gaps = 23/189 (12%)

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           PD VTF+ VL SC+  G    G  + ++I+ + F  +  + NALI+MY +C +L  AR++
Sbjct: 5   PDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64

Query: 206 FDGMP--RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS--- 260
           F+ M   ++ VVSW A+I  Y  +GH   A+ L+  M   G+  D   FVSVL ACS   
Sbjct: 65  FESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLA 124

Query: 261 -----HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEP 315
                H  +   GL+ F  + N             +V +  R G + +A  + +S+    
Sbjct: 125 QGREIHNRVFYSGLDSFQSLAN------------ALVTMYARFGSVGDAKRMFQSLQTR- 171

Query: 316 DGAVWGALL 324
           D   W A++
Sbjct: 172 DETSWNAVI 180


>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 591

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/529 (39%), Positives = 306/529 (57%), Gaps = 18/529 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVD 59
           VF + +  T L+ C N +I  + L+    E   LF  +R       N ++    L  C+ 
Sbjct: 68  VFSQRLNPT-LSHC-NTMIRAFSLSQTPCEGFRLFRALRRNISFPANPLSSSFALKCCIK 125

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
            G L  G+  H      G   D  +   LM +Y  C +     K+FD++P++  ++WN +
Sbjct: 126 SGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPQRDTVSWNVL 185

Query: 120 ISGYAQNGLATHVLELYREMKS---LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
           IS Y +N     VL L+ +MK+     V PD VT +  L +CA+LGA   G +V   I  
Sbjct: 186 ISCYLRNKRTRDVLVLFDKMKNDVDRCVKPDNVTCLLALQACANLGALDFGKQVHDFIDE 245

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
           NG      L+N L++MY+RCG++ KA  +F+ M  + VVSWTA+I G  ++G G+ A++ 
Sbjct: 246 NGLSGALNLSNTLVSMYSRCGSMDKAYEVFNRMRERNVVSWTAMISGLAMNGFGKEAIEA 305

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN-KYGLQPGPEHYTCMVDLL 295
           F+EMLK GI P+      +LSACSH+GL D+G+ +F  M++ ++ ++P   HY C+VDLL
Sbjct: 306 FNEMLKFGISPEEQTLTGLLSACSHSGLVDEGMMFFDRMRSGEFKIKPNLHHYGCIVDLL 365

Query: 296 GRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV 355
           GRA  L++A  LI+SM ++PD  +W  LLGAC++H NVEL E     +I+ +    G YV
Sbjct: 366 GRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGNVELGERVIAHLIEFKAEEAGDYV 425

Query: 356 LLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYR 415
           LL N YS     + +  +R +M+++R++ +PG S +EL+G VH F+V D +H +  EIY+
Sbjct: 426 LLLNTYSSVGKWEKVTELRSLMKKKRIQTNPGCSAIELQGTVHEFIVDDVSHPRKEEIYK 485

Query: 416 MLDKLENLVQEHDGTKRSDQKNSEEHLNDTE--------VHSEKLAIAFGIINTSPGTEI 467
           ML ++    Q+        +  SE H  D+E         HSEKLAIAFGI+ T P T I
Sbjct: 486 MLAEIN---QQLKIAGYVAEITSELHNLDSEEEKGYALRYHSEKLAIAFGILVTPPETTI 542

Query: 468 VVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            V KNLR C DCH F K VS + DR  IVRD +RFHHFK G CSC D+W
Sbjct: 543 RVTKNLRTCVDCHNFAKFVSDVYDRVVIVRDRSRFHHFKGGSCSCNDFW 591


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/440 (43%), Positives = 270/440 (61%), Gaps = 4/440 (0%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140
           D      +++   K G V + RKLFD++  K  I WNAMISGY Q G +   L L+  M+
Sbjct: 176 DLVCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQ 235

Query: 141 SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
             GV  + V+ V VLS+C+HLGA   G      I+ N       L  ALI+MYA+CGN+ 
Sbjct: 236 REGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMN 295

Query: 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
           KA  +F GM  K V +W++ IGG  ++G GE  ++LF  M +  ++P+   FVSVL  CS
Sbjct: 296 KAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCS 355

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320
             GL ++G ++F  M   YG++P  EHY CMVDL GRAG L+EAL  I SM V P    W
Sbjct: 356 VVGLVEEGRKHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAW 415

Query: 321 GALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380
           GALL ACKI++N+E+ ELA  K+++LE  N G YVLLSNIY+++++ D +  VR  M  +
Sbjct: 416 GALLNACKIYRNMEMGELASRKIVELEAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNVK 475

Query: 381 RLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD----QK 436
            ++K PG S +E+ G VH F VGD++H +  EI  ML ++   ++       ++      
Sbjct: 476 GVRKQPGCSVIEVGGEVHEFFVGDKSHPRYAEIQVMLGEISRRLKLSGYVANTNPVFFDI 535

Query: 437 NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIV 496
             EE  +   +HSEK+AIAFG+I+ SP   I ++KNLR+C DCH   K++SK  +R+ +V
Sbjct: 536 EEEEKEDALCMHSEKIAIAFGLISLSPDVPIRIVKNLRVCWDCHDATKMISKAFNREIVV 595

Query: 497 RDATRFHHFKSGFCSCKDYW 516
           RD  RFHHF+ G CSCK YW
Sbjct: 596 RDRNRFHHFRDGECSCKGYW 615



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 127/234 (54%), Gaps = 7/234 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +NA+ISGYV      EA+SLF  M+ +GV++N V+M+ +L  C   G L  G   H  
Sbjct: 209 IAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAY 268

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             +  L +  ++G  L+ MY KCG+++   ++F  + EK + TW++ I G A NG     
Sbjct: 269 IERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKC 328

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           LEL+  MK   V P+ +TFV VL  C+ +G    G +  + + +  +G  P L +   ++
Sbjct: 329 LELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESM-SKVYGIEPRLEHYGCMV 387

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGH---GEVAVQLFDEM 240
           ++Y R G+L +A    + MP R  V +W A++    I+ +   GE+A +   E+
Sbjct: 388 DLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEMGELASRKIVEL 441



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 118/263 (44%), Gaps = 37/263 (14%)

Query: 97  SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY-REMKSLG-VCPDAVTFVGV 154
           ++ Y  ++ D      L T+N+MI  ++++         Y R + S G + PD  TF  +
Sbjct: 58  NLHYSNQVLDNSQNPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFL 117

Query: 155 LSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKK------------- 201
           + + A L AH  G  V       GF  +P + + LI MYA  G L               
Sbjct: 118 VRTSAQLLAHGTGSSVHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDL 177

Query: 202 ------------------ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
                             AR +FD M  K  ++W A+I GY   G    A+ LF+ M + 
Sbjct: 178 VCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQRE 237

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKG-LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
           G++ +  + VSVLSACSH G  D+G   + Y  +NK  L+      T ++D+  + G +N
Sbjct: 238 GVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNK--LRMTLTLGTALIDMYAKCGNMN 295

Query: 303 EALELIESMLVEPDGAVWGALLG 325
           +A+E+   M  E +   W + +G
Sbjct: 296 KAMEVFWGM-KEKNVYTWSSAIG 317


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/521 (38%), Positives = 305/521 (58%), Gaps = 9/521 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +   L+  +N +I G V      EA  LF  M +   +  S   + ++      
Sbjct: 188 LFDEMPEKNILS--WNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTMIRASAGL 245

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G ++ G   H   +K G+  D  V   L+ MY KCGS++  + +FDQ+PEK  + WN++I
Sbjct: 246 GLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSII 305

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GYA +G +   L +Y EM+  GV  D  TF  ++  CA L +     +    +  +GFG
Sbjct: 306 AGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFG 365

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            +   N AL+++Y++ G ++ A+ +FD MP K V+SW A+I GYG HG G  AV++F+ M
Sbjct: 366 LDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERM 425

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           L  G+ P+   F++VLSACS++GL+D+G E F  M   + ++P   HY CM++LLGR G 
Sbjct: 426 LHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGL 485

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L+EA  LI+    +P   +W ALL AC++HKN EL + A  K+  + P     YV+L NI
Sbjct: 486 LDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNI 545

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+ +  L+    V   ++ R L+  P  S++E+K + + F+ GD+ H Q+ EIY+ LD+L
Sbjct: 546 YNRSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQKLDEL 605

Query: 421 ENLVQEH-----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRI 475
              + +H     D     D    EE +     HSEKLAIAFG+INTS  T + ++++ RI
Sbjct: 606 MLEISKHGYVPQDKFLLPDVDEQEERV--LLYHSEKLAIAFGLINTSDWTPLQIVQSHRI 663

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           CGDCH  IKL++ +  R+ +VRDA+RFHHFK G CSC DYW
Sbjct: 664 CGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 191/400 (47%), Gaps = 16/400 (4%)

Query: 30  EAVSLFGKMREQGV-EINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCL 88
           EA+ LF  +   G  +++S T   L+  C+    +          +  GLD D  + N +
Sbjct: 113 EALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRV 172

Query: 89  MTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDA 148
           + M+VKCG +   R+LFD++PEK +++WN +I G    G       L+  M        +
Sbjct: 173 LLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGS 232

Query: 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208
             FV ++ + A LG    G ++       G G + F+  ALI+MY++CG+++ A+ +FD 
Sbjct: 233 RMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQ 292

Query: 209 MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
           MP KT V W +II GY +HG+ E A+ ++ EM  SG++ D   F  ++  C+     +  
Sbjct: 293 MPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHA 352

Query: 269 LEYFYGM-KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
            +   G+ ++ +GL       T +VDL  + G++ +A  + + M+   +   W AL+   
Sbjct: 353 KQAHAGLVRHGFGLDIVAN--TALVDLYSKWGRIEDAKHVFD-MMPHKNVISWNALIAGY 409

Query: 328 KIH-KNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKK 384
             H + VE  E+ F +++   + P +  +  +LS       +  G      M R+ ++K 
Sbjct: 410 GNHGRGVEAVEM-FERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKP 468

Query: 385 DPGY--SYVELKGRVHLF-----MVGDRNHHQTVEIYRML 417
              +    +EL GR  L      ++ D     TV ++  L
Sbjct: 469 RAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAAL 508


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/513 (37%), Positives = 302/513 (58%), Gaps = 12/513 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + ++A+I+ +  +    EA+  F  M+++G+  N VT + LL     P  L      H +
Sbjct: 178 ITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLL 237

Query: 73  CVKFGLDLDFSVGNCLMTMYVKC--GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
             + GLD   ++ N L+ +Y +C  G +D    +  ++ E+ +  WN +I+GY  +G + 
Sbjct: 238 ITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSR 297

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             LE Y+ ++   +  D VTF+ VL++C    + + G  +       G  S+  + NAL 
Sbjct: 298 EALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALT 357

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           NMY++CG+++ AR IFD MP ++ VSW  ++  Y  HG  E  ++L  +M + G++ +G 
Sbjct: 358 NMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGI 417

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            FVSVLS+CSHAGL  +G +YF+ + +  G++   EHY C+VDLLGRAG+L EA + I  
Sbjct: 418 TFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISK 477

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M  EP+   W +LLGAC++HK+++  +LA  K+++L+P N+   V+LSNIYSE  +    
Sbjct: 478 MPSEPEIVTWASLLGACRVHKDLDRGKLAARKLLELDPGNSSASVVLSNIYSERGDWKNA 537

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENL-VQEHDG 429
            ++R  M  RR+KK PG S +++K +VH F V D +H +  EIY   DK+E L     + 
Sbjct: 538 AKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIY---DKVEELCFAMREA 594

Query: 430 TKRSDQK------NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFI 483
               D K      + E+  +    HSEKLAIAFG+I+T   + + + KNLR+C DCH   
Sbjct: 595 GYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPEKSSLHIFKNLRVCEDCHTAT 654

Query: 484 KLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K +SKI  R+ +VRD  RFHHF+ G CSCKDYW
Sbjct: 655 KFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 687



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 154/322 (47%), Gaps = 4/322 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N++IS Y ++    EA  +F +M+ +G   + VT L +L  CV+P  L  G        
Sbjct: 79  WNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPENLQHGKHVRESIS 138

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           +   +LD  VG  L+TMY +C S +   ++F ++ +K LITW+A+I+ +A +G     L 
Sbjct: 139 ETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFADHGHCGEALR 198

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
            +R M+  G+ P+ VTF+ +L+             +   I  +G      ++NAL+N+Y 
Sbjct: 199 YFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYG 258

Query: 195 RC--GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           RC  G L  A  I   M  + + +W  +I GY +HG    A++ +  +    I  D   F
Sbjct: 259 RCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTF 318

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +SVL+AC+ +    +G +  +    + GL         + ++  + G +  A  + +SM 
Sbjct: 319 ISVLNACTSSTSLAEG-KMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMP 377

Query: 313 VEPDGAVWGALLGACKIHKNVE 334
           +      W  +L A   H   E
Sbjct: 378 IR-SAVSWNGMLQAYAQHGESE 398



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/293 (31%), Positives = 149/293 (50%), Gaps = 6/293 (2%)

Query: 41  QGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDY 100
           +GV+ N +T L +L   VDP  L  G   H    +    LD  V   L+  Y KCGS+  
Sbjct: 4   EGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTD 63

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160
            RK+FD +P + + TWN+MIS Y+ +  +     +++ M+  G   D VTF+ +L +C +
Sbjct: 64  ARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVN 123

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
                 G  V + I    F  + F+  ALI MYARC + + A  +F  M +K +++W+AI
Sbjct: 124 PENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAI 183

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSA-CSHAGLTDKGLEYFYGMKNKY 279
           I  +  HGH   A++ F  M + GI P+   F+S+L+   + +GL +  L   + +  ++
Sbjct: 184 ITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEE--LSRIHLLITEH 241

Query: 280 GLQPGPEHYTCMVDLLGR--AGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           GL         +V++ GR   G+L+ A E+I   + E     W  L+    +H
Sbjct: 242 GLDDTTTMSNALVNVYGRCETGELDVA-EVILQEMDEQQITAWNVLINGYTLH 293


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/545 (36%), Positives = 310/545 (56%), Gaps = 47/545 (8%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  +++ +  N    EA+ LF +MR  G + N+ T   +   C+      +G   H  
Sbjct: 206 VSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGC 265

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K   +LD  VG  L+ +Y K G +D  R+ F+++P+K +I W+ MI+ YAQ+  +   
Sbjct: 266 ALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEA 325

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           +E++ +M+   V P+  TF  VL +CA +   ++G ++   +   G  S+ F++NAL+++
Sbjct: 326 VEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDV 385

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS--------- 243
           YA+CG ++ +  +F   P +  V+W  +I G+   G GE A++LF  ML+          
Sbjct: 386 YAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTY 445

Query: 244 ----------------------GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281
                                  ++PD   FV VLSAC++AGL D+G  YF  M   +G+
Sbjct: 446 SSALRACASLAALEPGLQIHSLTVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGI 505

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG 341
           +P  EHYTCMV LLGR G L++A++LI+ +  +P   VW ALLGAC IH ++EL  ++  
Sbjct: 506 EPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQ 565

Query: 342 KVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFM 401
           +V+++EP +   +VLLSN+Y+ A+  D +  VR  M+ + +KK+PG S++E +G VH F 
Sbjct: 566 RVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFT 625

Query: 402 VGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQ-KNSEEHLNDTE---------VHSEK 451
           VGD +H +   I  ML+ L      H  TK++    N    L D E         VHSE+
Sbjct: 626 VGDTSHPEVRVINGMLEWL------HMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSER 679

Query: 452 LAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCS 511
           LA++FGII T  G+ I +MKNLRIC DCH  IK +SK+V R+ +VRD  RFHHF+ G CS
Sbjct: 680 LALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCS 739

Query: 512 CKDYW 516
           C DYW
Sbjct: 740 CGDYW 744



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 154/311 (49%), Gaps = 9/311 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +    T+ +  LI GY  +    EA+ LF ++  +G E+N      +L + V  
Sbjct: 95  LFDEMPERN--TISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVST 152

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
               LG   H    K G + +  VG  L+  Y  CG VD  R++FD +  K +++W  M+
Sbjct: 153 DCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMV 212

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           + +A+N      L+L+ +M+ +G  P+  TF  V  +C  L A  VG  V      + + 
Sbjct: 213 TCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYE 272

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            + ++  AL+++Y + G++  AR  F+ +P+K V+ W+ +I  Y      + AV++F +M
Sbjct: 273 LDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQM 332

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEY---FYGMKNKYGLQPGPEHYTCMVDLLGR 297
            ++ + P+   F SVL AC+    T +GL      +    K GL         ++D+  +
Sbjct: 333 RQALVLPNQFTFASVLQACA----TMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAK 388

Query: 298 AGQLNEALELI 308
            G++  ++EL 
Sbjct: 389 CGRMENSMELF 399



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 130/288 (45%), Gaps = 14/288 (4%)

Query: 44  EINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRK 103
           E NS      L  C+       G   HC  +K G  LD    N L+ MYVK   +    K
Sbjct: 35  EFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASK 94

Query: 104 LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163
           LFD++PE+  I++  +I GYA++      +EL+  +   G   +   F  +L        
Sbjct: 95  LFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSTDC 154

Query: 164 HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGG 223
             +G  +   I   G  SN F+  ALI+ Y+ CG +  AR +FDG+  K +VSWT ++  
Sbjct: 155 GELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTC 214

Query: 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP 283
           +  +   + A++LF +M   G +P+   F SV  AC        GLE F   K+ +G   
Sbjct: 215 FAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKAC-------LGLEAFDVGKSVHGCAL 267

Query: 284 GPEHY------TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
              +         ++DL  ++G +++A    E  + + D   W  ++ 
Sbjct: 268 KSRYELDLYVGVALLDLYTKSGDIDDARRAFEE-IPKKDVIPWSFMIA 314


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/505 (39%), Positives = 288/505 (57%), Gaps = 4/505 (0%)

Query: 16  NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVK 75
           N++I  Y+  +    ++ +F  M +  +  +S T   +L          +G   H I ++
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 76  FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLEL 135
            G   D      L+ +Y  C S+    +LFD++PE+  +TWNA+I+GY  N      ++ 
Sbjct: 118 MGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDA 177

Query: 136 YREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR 195
           +R M + G  P   T V VLS+C+HLGA + G  + + I  N    N F+  ALI+MYA+
Sbjct: 178 FRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAK 237

Query: 196 CGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSV 255
           CG + +   +F+ +  K V +W  +I GY ++G G+ A+Q F  ML    +PD   F+ V
Sbjct: 238 CGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGV 297

Query: 256 LSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEP 315
           L AC H GL  +G   F  MK ++GLQP  EHY CMVDLLGRAG L EALELI+SM +EP
Sbjct: 298 LCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEP 357

Query: 316 DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRM 375
           D  +W ALL AC++H N +L E    ++I+LEP N   YVLLSNIYS  R    + ++R 
Sbjct: 358 DPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRG 417

Query: 376 MMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQ 435
           MM  R ++K PG S +E+   V+ F+  +    +   IY+ LD L   ++E+     +D 
Sbjct: 418 MMNLRGIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDM 477

Query: 436 K----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVD 491
                  EE  +    HSEKLA+AFG++N+     + ++KNLRIC DCH F K++S +  
Sbjct: 478 ALYDIEKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYK 537

Query: 492 RQFIVRDATRFHHFKSGFCSCKDYW 516
           R  +VRD  RFHHF  GFCSC+DYW
Sbjct: 538 RYIVVRDRNRFHHFYEGFCSCRDYW 562



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 137/292 (46%), Gaps = 16/292 (5%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +   +T  +NALI+GY  N    +A+  F  M   G + +  T++ +L  C   
Sbjct: 146 LFDEMPERNAVT--WNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHL 203

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G    G   H       L L+  VG  L+ MY KCG+V    K+F+++ EK + TWN +I
Sbjct: 204 GAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLI 263

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVG----LEVEQQIQA 176
           SGYA NG     L+ +  M      PD VTF+GVL +C H G  + G    + ++QQ   
Sbjct: 264 SGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQ--- 320

Query: 177 NGFGSNPFLNN--ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVA 233
             FG  P + +   ++++  R G L++A  +   M      + W A++    +HG+ ++ 
Sbjct: 321 --FGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLG 378

Query: 234 VQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
             +   +++  + P+      +LS           +    GM N  G++  P
Sbjct: 379 EYIIKRLIE--LEPNNGENYVLLSNIYSRERRWAEVGKLRGMMNLRGIRKVP 428


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/512 (37%), Positives = 293/512 (57%), Gaps = 5/512 (0%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           T   V +  LI+GY  N + +EA+ L   M       +  T    L      G   +G  
Sbjct: 125 TRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQ 184

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            H + VK+ LD D  VG+ L+ MY +C  +D   ++FD +  K  ++WNA+I+G+A+ G 
Sbjct: 185 MHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGD 244

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
               L  + EM+  G      T+  V S+ A +GA   G  V   +  +G     F+ N 
Sbjct: 245 GETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANT 304

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           ++ MYA+ G++  AR +FD + ++ +V+W  ++  +  +G G+ AV  F+E+ K GI+ +
Sbjct: 305 ILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLN 364

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
              F+SVL+ACSH GL  +G +YF  MK+ Y ++P  +HY   VDLLGRAG L EAL  +
Sbjct: 365 QITFLSVLTACSHGGLVKEGKQYFDMMKD-YNVEPEIDHYVSFVDLLGRAGLLKEALIFV 423

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
             M +EP  AVWGALLGAC++HKN ++ + A   V +L+P +TG  VLL NIY+     D
Sbjct: 424 FKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDPEDTGPPVLLYNIYASTGQWD 483

Query: 369 GIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHD 428
              RVR MM+   +KK+P  S+VE++  VH+F+  D  H ++ EIYRM +++   +++  
Sbjct: 484 DAARVRKMMKATGVKKEPACSWVEIENSVHMFVADDSTHPKSEEIYRMWEEVNTRIKKAG 543

Query: 429 GTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
               +D        +E     + HSEK+A+AF +IN   G  I +MKN+RICGDCH   +
Sbjct: 544 YVPNTDYVLLHIKEQERETKLQYHSEKIALAFALINMPAGATIRIMKNIRICGDCHSAFR 603

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            VS++  R+ +VRD  RFHHF +G CSC DYW
Sbjct: 604 YVSEVFKREIVVRDTNRFHHFSNGSCSCGDYW 635



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 116/241 (48%), Gaps = 2/241 (0%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+ MY KCG+V   R +FD +P + +++W  +I+GYAQN +    L L  +M      
Sbjct: 101 NSLIHMYCKCGAVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFR 160

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P   TF   L +    G   +G ++           + ++ +AL++MYARC  +  A  +
Sbjct: 161 PSGFTFTSFLKAAGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRV 220

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           FD +  K  VSW A+I G+   G GE  +  F EM ++G       + SV SA +  G  
Sbjct: 221 FDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGAL 280

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           ++G  + +    K G +        ++ +  ++G + +A ++ +  + + D   W  +L 
Sbjct: 281 EQG-RWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDR-VDQRDLVTWNTMLT 338

Query: 326 A 326
           A
Sbjct: 339 A 339



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 95/206 (46%), Gaps = 10/206 (4%)

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
           + P    +  ++++CA     +    +   +  +    + FL N+LI+MY +CG +  AR
Sbjct: 58  LAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDAR 117

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG 263
            +FDG+P + VVSWT +I GY  +     A+ L  +ML++  RP G  F S L A    G
Sbjct: 118 HVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACG 177

Query: 264 LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGAL 323
               G E  + +  KY L       + ++D+  R  Q++ A+ + +  L   +   W AL
Sbjct: 178 GRGIG-EQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFD-WLDSKNEVSWNAL 235

Query: 324 L--------GACKIHKNVELAELAFG 341
           +        G   + K  E+    FG
Sbjct: 236 IAGFARKGDGETTLMKFAEMQRNGFG 261


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/508 (39%), Positives = 297/508 (58%), Gaps = 4/508 (0%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
            V + A+I+GYV + + SEA+ LF +M  +G++ +++     +  C     L  G   H  
Sbjct: 530  VSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQ 589

Query: 73   CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
                G   D S+ N L+++Y +CG +      F+++ +K  I+WN+++SG AQ+G     
Sbjct: 590  SYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEA 649

Query: 133  LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            L+++  M       +  T+   +S+ A L     G ++   +   G+ S   ++N+LI++
Sbjct: 650  LQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISL 709

Query: 193  YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
            YA+ G++  A   F+ M  + V+SW A+I GY  HG G  A++LF+EM   GI P+   F
Sbjct: 710  YAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTF 769

Query: 253  VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            V VLSACSH GL  +GL+YF  M   + L P  EHY C+VDLLGRAGQL+ A+E I+ M 
Sbjct: 770  VGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMP 829

Query: 313  VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            +  D  +W  LL AC IHKN+E+ E A   +++LEP ++  YVL+SNIY+ +R       
Sbjct: 830  IPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDW 889

Query: 373  VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
             R +M++  +KK+PG S++E+K  VH F  GD+ H  T +IY  +  L     E    + 
Sbjct: 890  SRKLMKDXGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGYVQD 949

Query: 433  SDQ--KNSEEHLND--TEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
            S      SE+   D  T VHSEKLAIAFG+++      I VMKNLR+C DCH +IK VSK
Sbjct: 950  SFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCNDCHNWIKYVSK 1009

Query: 489  IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            I +R  IVRDA RFHHF  G CSCKD+W
Sbjct: 1010 ISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 100/336 (29%), Positives = 160/336 (47%), Gaps = 2/336 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V YN+LISG V       A+ LF KM+   ++ + +T+  LL  C   G L  GM  H  
Sbjct: 328 VSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSH 387

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G+  D  +   L+ +Y KC  V+   K F     + ++ WN M+  Y Q    +  
Sbjct: 388 AIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDS 447

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            E++R+M+  G+ P+  T+  +L +C  LGA  +G ++   +   GF  N ++ + LI+M
Sbjct: 448 FEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDM 507

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+ G L  A  I   +P   VVSWTA+I GY  H     A+QLF+EM   GI+ D   F
Sbjct: 508 YAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGF 567

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S +SAC+      +G +  +      G          ++ L  R G++ EA    E  +
Sbjct: 568 ASAISACAGIRALRQG-QQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEK-I 625

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEP 348
            + +   W +L+         E A   F ++++ E 
Sbjct: 626 GDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEA 661



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 166/322 (51%), Gaps = 2/322 (0%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           T   V +N ++  Y     +S++  +F +M+ +G+  N  T   +L  C   G L+LG  
Sbjct: 425 TENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQ 484

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            H   +K G  L+  V + L+ MY K G +    ++  ++PE  +++W AMI+GY Q+ +
Sbjct: 485 IHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDM 544

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
            +  L+L+ EM+  G+  D + F   +S+CA + A   G ++  Q  A GFG++  +NNA
Sbjct: 545 FSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNA 604

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           LI++YARCG +++A   F+ +  K  +SW +++ G    G+ E A+Q+F  ML++    +
Sbjct: 605 LISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVN 664

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
              + S +SA +      +G +  + M  K G     E    ++ L  ++G +++A    
Sbjct: 665 MFTYGSAISAAASLANIKQG-QQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREF 723

Query: 309 ESMLVEPDGAVWGALLGACKIH 330
             M  E +   W A++     H
Sbjct: 724 NDM-SERNVISWNAMITGYSQH 744



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 149/313 (47%), Gaps = 2/313 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+ISG   N L  EA+ LF  M    +      +  +L          LG   HC+
Sbjct: 227 VTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCL 286

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K+G   +  V N L+ +Y +   +    ++F  +  +  +++N++ISG  Q G +   
Sbjct: 287 VIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRA 346

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           LEL+ +M+   + PD +T   +LS+CA +GA   G+++       G  ++  L  +L+++
Sbjct: 347 LELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDL 406

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++C +++ A   F     + +V W  ++  YG   +   + ++F +M   G+ P+   +
Sbjct: 407 YSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTY 466

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S+L  C+  G    G E  +    K G Q      + ++D+  + GQL  AL ++   L
Sbjct: 467 PSILRTCTSLGALYLG-EQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRR-L 524

Query: 313 VEPDGAVWGALLG 325
            E D   W A++ 
Sbjct: 525 PEDDVVSWTAMIA 537



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 113/462 (24%), Positives = 205/462 (44%), Gaps = 61/462 (13%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICV-- 58
           VFDE+  S      +N +I  +V      +   LF +M  +G+  N  T   +L  CV  
Sbjct: 115 VFDEN--SNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGG 172

Query: 59  DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
           D  + ++    H     +G D    V N L+ +Y K G ++  +K+F+ +  K ++TW A
Sbjct: 173 DIAFNYVKQV-HSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVA 231

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           MISG +QNGL    + L+ +M +  + P       VLS+   +    +G ++   +   G
Sbjct: 232 MISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWG 291

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
           F S  ++ N L+ +Y+R   L  A  IF  M  +  VS+ ++I G    G  + A++LF 
Sbjct: 292 FHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFT 351

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMK--------------------- 276
           +M +  ++PD     S+LSAC+  G   KG++ + + +K                     
Sbjct: 352 KMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCA 411

Query: 277 -----NKYGLQPGPEH---YTCMVDLLGRAGQLNEALELIESMLVE---PDGAVWGALLG 325
                +K+ L    E+   +  M+   G+   L+++ E+   M +E   P+   + ++L 
Sbjct: 412 DVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILR 471

Query: 326 ACKIHKNVELAELAFGKVIKLEPMNTGY----YV--LLSNIYSEARNLDGIMRVRMMMRE 379
            C       L  L  G+ I    + TG+    YV  +L ++Y++   L   +R+      
Sbjct: 472 TC-----TSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRIL----- 521

Query: 380 RRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLE 421
           RRL +D   S+  +       + G   H    E  ++ +++E
Sbjct: 522 RRLPEDDVVSWTAM-------IAGYVQHDMFSEALQLFEEME 556



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 147/303 (48%), Gaps = 13/303 (4%)

Query: 29  SEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCL 88
           S+ + L   M E+GV  N    L LL  C+  G L+  M  HC   K G D +  + + L
Sbjct: 40  SKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSL 99

Query: 89  MTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDA 148
           +  Y + G      K+FD+   + + +WN MI  +        V  L+R M + G+ P+ 
Sbjct: 100 VDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNG 159

Query: 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQAN----GFGSNPFLNNALINMYARCGNLKKARA 204
            TF GVL +C       +     +Q+ +     GF S+P + N LI++Y++ G ++ A+ 
Sbjct: 160 YTFAGVLKACV---GGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKK 216

Query: 205 IFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL 264
           +F+ +  K +V+W A+I G   +G  E A+ LF +M  S I P      SVLSA +   L
Sbjct: 217 VFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQL 276

Query: 265 TDKGLEYFYGMKNKYGLQPGPEHYTC--MVDLLGRAGQLNEALELIESMLVEPDGAVWGA 322
            + G E  + +  K+G     E Y C  +V L  R+ +L  A E I S +   DG  + +
Sbjct: 277 FELG-EQLHCLVIKWGFH--SETYVCNGLVALYSRSRKLISA-ERIFSTMNSRDGVSYNS 332

Query: 323 LLG 325
           L+ 
Sbjct: 333 LIS 335


>gi|414879360|tpg|DAA56491.1| TPA: hypothetical protein ZEAMMB73_164599 [Zea mays]
          Length = 520

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/521 (38%), Positives = 301/521 (57%), Gaps = 11/521 (2%)

Query: 5   SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD-PGYL 63
           ++ +  + V YNA IS      L + A++LF +MR +G+  +  T+  LL       G  
Sbjct: 2   ALPAGTVVVAYNAAISRCARAGLYARALALFREMRGRGLRADEYTLPPLLNSAAQLRGPP 61

Query: 64  WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCG--SVDYGRKLFDQVPEKGLITWNAMIS 121
                 H + ++ GL     V N L+  Y +         R +FD++P + ++TW ++++
Sbjct: 62  EAVAALHALLLRAGLAPHLHVANALVDAYARLPHAGAAAARAVFDEMPRRDVVTWTSLLT 121

Query: 122 GYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGS 181
           G A+ G     +  Y  M + GV PD       LSSCA   A  +G  V     A   G 
Sbjct: 122 GLARAGAHGAAVRAYHGMVASGVQPDEFAVPAALSSCAASTALDLGRSV--HAAAVRLGL 179

Query: 182 NPF--LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            PF  + N+L++MYA+ G L+ ARA+FD MP +  ++WTA+I GY  +G G  +++++ +
Sbjct: 180 RPFRSVENSLVSMYAKTGALRDARAVFDAMPARCTITWTALIVGYAQNGRGRQSLEVYAD 239

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M++SG RPD   F+ +L ACSHAGL D G  +F  M   YG+ PGP+HY CMVDLLGRAG
Sbjct: 240 MVRSGCRPDYVTFIGLLFACSHAGLVDAGRAHFRSMVPVYGIAPGPDHYACMVDLLGRAG 299

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
           +L+EA++L+     E D  VW +LLGAC++H+N ELAE A   V +L+P +   YV+LSN
Sbjct: 300 RLDEAMDLLNRSSTELDATVWKSLLGACRVHQNAELAERAAEMVWRLDPADAVPYVMLSN 359

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
           +YS AR    + R+R +M+ R + K+PG S+V + G  HLF V DR+H +  EIYR +++
Sbjct: 360 LYSRARRWGDVARIRALMKARGVTKEPGCSWVGVNGITHLFHVEDRDHPRAAEIYRKVEE 419

Query: 420 LENLVQEHDGTKRSDQKNSEE----HLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRI 475
           +   ++       +D    +E           HSE+LA+AFG++       I V KNLR+
Sbjct: 420 MTERIRVEGYVPDTDWALQDEVPEWRQRGLAYHSERLAVAFGLLAVPAAAPIRVFKNLRV 479

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           CGDCH  IK+V+K+  R+ I+RDA  FHH K G CSC DYW
Sbjct: 480 CGDCHTAIKMVAKVYGREIILRDANCFHHMKDGECSCGDYW 520


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/544 (36%), Positives = 305/544 (56%), Gaps = 45/544 (8%)

Query: 15   YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
            +N++I GY  N    EA+ LF +M+  G++ +  ++  +L  CV       G   H   V
Sbjct: 548  WNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIV 607

Query: 75   KFGLDLDFSVGNCLMTMYVKCGSVDYGRK------------------------------- 103
            +  ++ +  +   L+ MY KCGS+DY  K                               
Sbjct: 608  RNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKN 667

Query: 104  LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163
            LFDQ+ ++    WN++++GYA  GL       + EM    +  D +T V +++ C+ L A
Sbjct: 668  LFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPA 727

Query: 164  HSVGLEVEQQIQANGF-GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIG 222
               G ++   I   GF   +  L  AL++MY++CG + KAR +FD M  K +VSW A+I 
Sbjct: 728  LEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMIS 787

Query: 223  GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQ 282
            GY  HG  + A+ L++EM K G+ P+   F+++LSACSH GL ++GL  F  M+  Y ++
Sbjct: 788  GYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIE 847

Query: 283  PGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGK 342
               EHYTCMVDLLGRAG+L +A E +E M +EP+ + WGALLGAC++HK++++  LA  +
Sbjct: 848  AKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQR 907

Query: 343  VIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMV 402
            + +L+P N G YV++SNIY+ A     +  +R MM+ + +KKDPG S++E+   + +F  
Sbjct: 908  LFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHA 967

Query: 403  GDRNHHQTVEIYRMLDKLENLVQEHDGTKR-SDQKNSEEHLNDTEV---------HSEKL 452
            G + H +T EIY   + L +L  +  G     D     +++ D +          HSE+L
Sbjct: 968  GSKTHPKTEEIY---NNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERL 1024

Query: 453  AIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSC 512
            A++ G+I+    + I V KNLRICGDCH   K +SKI  R+ I RD  RFHHF++G CSC
Sbjct: 1025 ALSLGLISLPKKSTIRVFKNLRICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSC 1084

Query: 513  KDYW 516
             DYW
Sbjct: 1085 GDYW 1088



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 152/331 (45%), Gaps = 32/331 (9%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V YNAL++GYV      EA+ L+  M+ E G++ +  T   LL +C +      G   H 
Sbjct: 444 VSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHA 503

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             ++  +  +  V   L+ MY +CG ++Y +++F+++ E+   +WN+MI GY QNG    
Sbjct: 504 HLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQE 563

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L L+++M+  G+ PD  +   +LSSC  L     G E+   I  N       L   L++
Sbjct: 564 ALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVD 623

Query: 192 MYARCGNL-------------------------------KKARAIFDGMPRKTVVSWTAI 220
           MYA+CG++                                 A+ +FD M ++    W +I
Sbjct: 624 MYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSI 683

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           + GY   G  + +   F EML+S I  D    V++++ CS     + G +    +  K  
Sbjct: 684 LAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGF 743

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           +       T +VD+  + G + +A  + ++M
Sbjct: 744 VNCSVVLETALVDMYSKCGAITKARTVFDNM 774



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 153/324 (47%), Gaps = 7/324 (2%)

Query: 4   ESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL 63
           E +   +LT  +N +I  Y       E + L+G+MR  G   +  T   ++  C+    +
Sbjct: 133 EEMPERNLTA-WNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDM 191

Query: 64  WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGY 123
                     VK GL+ +  VG  L+  Y + G +D      D++    ++TWNA+I+GY
Sbjct: 192 GGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGY 251

Query: 124 AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP 183
            +         ++  M  +GVCPD  TF   L  C  L +   G +V  ++ A GF  + 
Sbjct: 252 VKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDT 311

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
           F+ NALI+MYA+C + +    +FD M  +  V+W +II      GH   A+ LF  M +S
Sbjct: 312 FVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQES 371

Query: 244 GIRPDGTAFVSVLSACSHAGLTD--KGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301
           G + +     S+L A   AGL D  KG E  +G   +  L       + +VD+  + G +
Sbjct: 372 GYKSNRFNLGSILMAS--AGLADIGKGRE-LHGHLVRNLLNSDIILGSALVDMYSKCGMV 428

Query: 302 NEALELIESMLVEPDGAVWGALLG 325
            EA ++  S+L E +   + ALL 
Sbjct: 429 EEAHQVFRSLL-ERNEVSYNALLA 451



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 154/313 (49%), Gaps = 3/313 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+I+GYV      EA  +F +M + GV  ++ T    L +C        G   H  
Sbjct: 242 VTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSK 301

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +  G   D  VGN L+ MY KC   +   K+FD++ E+  +TWN++IS  AQ G     
Sbjct: 302 LIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDA 361

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+  M+  G   +      +L + A L     G E+   +  N   S+  L +AL++M
Sbjct: 362 LVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDM 421

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML-KSGIRPDGTA 251
           Y++CG +++A  +F  +  +  VS+ A++ GY   G  E A++L+ +M  + GI+PD   
Sbjct: 422 YSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFT 481

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F ++L+ C++    ++G +  +    +  +       T +V +    G+LN A E+   M
Sbjct: 482 FTTLLTLCANQRNDNQGRQ-IHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRM 540

Query: 312 LVEPDGAVWGALL 324
             E +   W +++
Sbjct: 541 -AERNAYSWNSMI 552



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 126/235 (53%), Gaps = 6/235 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T  +N++++GY    L  E+ + F +M E  +E + +TM+ ++ +C     L  G   H 
Sbjct: 677 TALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHS 736

Query: 72  ICVKFG-LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
           + +K G ++    +   L+ MY KCG++   R +FD +  K +++WNAMISGY+++G + 
Sbjct: 737 LIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSK 796

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN-GFGSNPFLNNAL 189
             L LY EM   G+ P+ VTF+ +LS+C+H G    GL +   +Q +    +       +
Sbjct: 797 EALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCM 856

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGH---GEVAVQLFDEM 240
           +++  R G L+ A+   + MP +  VS W A++G   +H     G +A Q   E+
Sbjct: 857 VDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFEL 911



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 106/228 (46%), Gaps = 3/228 (1%)

Query: 44  EINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVD---Y 100
           ++N +    L+  C+D      G   H   +  G + D  +   ++ +Y + G +D   Y
Sbjct: 68  DVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCY 127

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160
            RKLF+++PE+ L  WN MI  YA+      VL LY  M+  G   D  TF  V+ +C  
Sbjct: 128 ARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIA 187

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           +       +++  +   G   N F+  AL++ YAR G +  A    D +   +VV+W A+
Sbjct: 188 MEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAV 247

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
           I GY      E A  +FD MLK G+ PD   F S L  C      D G
Sbjct: 248 IAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGG 295


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/505 (39%), Positives = 288/505 (57%), Gaps = 4/505 (0%)

Query: 16  NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVK 75
           N++I  Y+  +    ++ +F  M +  +  +S T   +L          +G   H I ++
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 76  FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLEL 135
            G   D      L+ +Y  C S+    +LFD++PE+  +TWNA+I+GY  N      ++ 
Sbjct: 118 MGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDA 177

Query: 136 YREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR 195
           +R M + G  P   T V VLS+C+HLGA + G  + + I  N    N F+  ALI+MYA+
Sbjct: 178 FRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAK 237

Query: 196 CGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSV 255
           CG + +   +F+ +  K V +W  +I GY ++G G+ A+Q F  ML    +PD   F+ V
Sbjct: 238 CGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGV 297

Query: 256 LSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEP 315
           L AC H GL  +G   F  MK ++GLQP  EHY CMVDLLGRAG L EALELI+SM +EP
Sbjct: 298 LCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEP 357

Query: 316 DGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRM 375
           D  +W ALL AC++H N +L E    ++I+LEP N   YVLLSNIYS  R    + ++R 
Sbjct: 358 DPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRG 417

Query: 376 MMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQ 435
           MM  R ++K PG S +E+   V+ F+  +    +   IY+ LD L   ++E+     +D 
Sbjct: 418 MMSLRGIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDM 477

Query: 436 K----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVD 491
                  EE  +    HSEKLA+AFG++N+     + ++KNLRIC DCH F K++S +  
Sbjct: 478 ALYDIEKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYK 537

Query: 492 RQFIVRDATRFHHFKSGFCSCKDYW 516
           R  +VRD  RFHHF  GFCSC+DYW
Sbjct: 538 RYIVVRDRNRFHHFYEGFCSCRDYW 562



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 123/249 (49%), Gaps = 14/249 (5%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +   +T  +NALI+GY  N    +A+  F  M   G + +  T++ +L  C   
Sbjct: 146 LFDEMPERNAVT--WNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHL 203

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G    G   H       L L+  VG  L+ MY KCG+V    K+F+++ EK + TWN +I
Sbjct: 204 GAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLI 263

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVG----LEVEQQIQA 176
           SGYA NG     L+ +  M      PD VTF+GVL +C H G  + G    + ++QQ   
Sbjct: 264 SGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQ--- 320

Query: 177 NGFGSNPFLNN--ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVA 233
             FG  P + +   ++++  R G L++A  +   M      + W A++    +HG+ ++ 
Sbjct: 321 --FGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLG 378

Query: 234 VQLFDEMLK 242
             +   +++
Sbjct: 379 EYIIKRLIE 387


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/518 (38%), Positives = 308/518 (59%), Gaps = 26/518 (5%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVT---MLCLLPICVDPGYLWLGMCC 69
           V + A+ISG++ N    EAV LF +M+ +GV  N  T   +L  LP+ + P  +      
Sbjct: 367 VSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPV-ISPSEV------ 419

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   VK   +   +VG  L+  YVK G VD   K+F  +  K ++ W+AM++GYAQ G  
Sbjct: 420 HAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGET 479

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG------SNP 183
              ++++ E+   GV P+  TF  +L+ CA   A S+G    Q  Q +GF       S+ 
Sbjct: 480 EAAIKIFSELTKGGVKPNEFTFSSILNVCAATTA-SMG----QGKQFHGFAIKSRLDSSL 534

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
            +++AL+ MYA+ G+++ A  +F     K +VSW ++I GY  HG    A+ +F EM K 
Sbjct: 535 CVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKR 594

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
            ++ D   F+ V +AC+HAGL ++G +YF  M     + P  EH +CMVDL  RAGQL +
Sbjct: 595 KVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEK 654

Query: 304 ALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE 363
           A+++I++M       +W  +L AC++HK  EL  LA  K+I + P ++  YVLLSN+Y+E
Sbjct: 655 AMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAE 714

Query: 364 ARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD----K 419
           + +     +VR +M ER +KK+PGYS++E+K + + F+ GDR+H    +IY  L+    +
Sbjct: 715 SGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYMKLEDLSTR 774

Query: 420 LENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDC 479
           L++L  E D +      + E        HSE+LAIAFG+I T  G+ ++++KNLR+CGDC
Sbjct: 775 LKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDC 834

Query: 480 HLFIKLVSKIVDRQFIVRDATRFHHFKS-GFCSCKDYW 516
           H+ IKL++KI +R+ +VRD+ RFHHF S G CSC D+W
Sbjct: 835 HVVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 872



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 82/247 (33%), Positives = 134/247 (54%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           Y +L+ G+  +    EA  LF  ++  G+E++      +L +         G   HC C+
Sbjct: 65  YTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCI 124

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           KFG   D SVG  L+  Y+K  +   GR +FD++ E+ ++TW  +ISGYA+N L   VL 
Sbjct: 125 KFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSLNEEVLT 184

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+  M+  G  P++ TF   L   A  G    GL+V   +  NG      ++N+LIN+Y 
Sbjct: 185 LFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYL 244

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CGN++KAR +FD    K+VV+W ++I GY  +G    A+ +F  M  + +R   ++F S
Sbjct: 245 KCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFAS 304

Query: 255 VLSACSH 261
           ++  C++
Sbjct: 305 IIKLCAN 311



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 106/346 (30%), Positives = 171/346 (49%), Gaps = 9/346 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE +K  ++ V +  LISGY  NSL  E ++LF +M+++G + NS T    L +  + 
Sbjct: 154 VFDE-MKERNV-VTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEE 211

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G    G+  H + VK GLD    V N L+ +Y+KCG+V   R LFD+   K ++TWN+MI
Sbjct: 212 GVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMI 271

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGYA NGL    L ++  M+   V     +F  ++  CA+L       ++   +   GF 
Sbjct: 272 SGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFV 331

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            +  +  AL+  Y++C  +  A  +F        VVSWTA+I G+  +   E AV LF E
Sbjct: 332 FDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSE 391

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M + G+RP+   +  +L+A      ++      +    K   +      T ++D   + G
Sbjct: 392 MKRKGVRPNEFTYSVILTALPVISPSE-----VHAQVVKTNYERSSTVGTALLDAYVKLG 446

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345
           +++EA ++  S +   D   W A+L         E A   F ++ K
Sbjct: 447 KVDEAAKVF-SGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTK 491



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 117/262 (44%), Gaps = 17/262 (6%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           Y   LFD+ P++   ++ +++ G++++G       L+  ++ LG+  D   F  VL   A
Sbjct: 49  YAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSA 108

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
            L     G ++  Q    GF  +  +  +L++ Y +  N K  R +FD M  + VV+WT 
Sbjct: 109 TLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTT 168

Query: 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279
           +I GY  +   E  + LF  M   G +P+   F + L   +  G+  +GL+  + +  K 
Sbjct: 169 LISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQ-VHTVVVKN 227

Query: 280 GLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH--------- 330
           GL         +++L  + G + +A  L +   V+     W +++     +         
Sbjct: 228 GLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKS-VVTWNSMISGYAANGLDLEALGM 286

Query: 331 ------KNVELAELAFGKVIKL 346
                  +V L+E +F  +IKL
Sbjct: 287 FYSMRLNHVRLSESSFASIIKL 308


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/527 (39%), Positives = 319/527 (60%), Gaps = 20/527 (3%)

Query: 1   VFDE-SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD 59
           +FDE  ++S    V +N ++  +  N    +A+ LF +M+++G   +  T+  ++  C  
Sbjct: 104 LFDEMPVRSL---VSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAA 160

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              ++     H   +K  LD +  VG  L+ +Y KCG V     +F+ +PE+  +TW++M
Sbjct: 161 KCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSM 220

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           ++GY QN L    L L+   +++G+  +  T    LS+CA   A   G +V+      G 
Sbjct: 221 VAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGI 280

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
           GSN F+ ++LI+MYA+CG +++A  +F  +  K VV W AI+ G+  H     A+  F++
Sbjct: 281 GSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEK 340

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M + GI P+   ++SVLSACSH GL +KG +YF  M   + + P   HY+CMVD+LGRAG
Sbjct: 341 MQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAG 400

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
            L+EA + I+ M  +   ++WG+LL +C+I++N+ELAE+A   + ++EP N G +VLLSN
Sbjct: 401 LLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSN 460

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
           IY+     + + R R +++E + KK+ G S++E+K +VH FMVG+RNH + VEIY    K
Sbjct: 461 IYAANDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYL---K 517

Query: 420 LENLVQEHDGTKRSDQKNSEEH-LNDTEV---------HSEKLAIAFGIINTSPGTEIVV 469
           LE+LV E    K+   K   EH L+D E          HSEKLA+ FGI+    G  I +
Sbjct: 518 LEDLVGE---MKKIGYKAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPHGAPIRI 574

Query: 470 MKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           MKNLRICGDCH F+KL S I +R+ IVRD  RFHHFK+G+CSC ++W
Sbjct: 575 MKNLRICGDCHSFMKLASSITEREIIVRDTNRFHHFKNGYCSCGEFW 621



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 148/301 (49%), Gaps = 16/301 (5%)

Query: 66  GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
           GM CH   ++ GL  D    N LM MY KCG V+  RKLFD++P + L++WN M+  + Q
Sbjct: 66  GMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQ 125

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG----- 180
           NG     L L+ +M+  G      T   V+ +CA   A     E +   Q +GF      
Sbjct: 126 NGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACA---AKCCVFECK---QLHGFALKTAL 179

Query: 181 -SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            SN F+  AL+++YA+CG +K A  +F+ MP ++ V+W++++ GY  +   E A+ LF  
Sbjct: 180 DSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHR 239

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
               G+  +     S LSAC+      +G +    +  K G+       + ++D+  + G
Sbjct: 240 AQAMGLEHNQFTISSALSACAARAALIEG-KQVQAVSCKTGIGSNIFVISSLIDMYAKCG 298

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE--PMNTGYYVLL 357
            + EA  +  S + E +  +W A+L     H     A + F K+ ++   P +  Y  +L
Sbjct: 299 IIEEAYTVFSS-VEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVL 357

Query: 358 S 358
           S
Sbjct: 358 S 358



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 2/172 (1%)

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
           +L S A   A   G+    QI   G  ++   +N L+NMY++CG ++ AR +FD MP ++
Sbjct: 53  LLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRS 112

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
           +VSW  ++G +  +G  E A+ LF +M K G         SV+ AC+ A       +  +
Sbjct: 113 LVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACA-AKCCVFECKQLH 171

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           G   K  L       T ++D+  + G + +A  + E M    D   W +++ 
Sbjct: 172 GFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSD-VTWSSMVA 222


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/527 (39%), Positives = 319/527 (60%), Gaps = 20/527 (3%)

Query: 1   VFDE-SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD 59
           +FDE  ++S    V +N ++  +  N    +A+ LF +M+++G   +  T+  ++  C  
Sbjct: 77  LFDEMPVRSL---VSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAA 133

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              ++     H   +K  LD +  VG  L+ +Y KCG V     +F+ +PE+  +TW++M
Sbjct: 134 KCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSM 193

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           ++GY QN L    L L+   +++G+  +  T    LS+CA   A   G +V+      G 
Sbjct: 194 VAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGI 253

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
           GSN F+ ++LI+MYA+CG +++A  +F  +  K VV W AI+ G+  H     A+  F++
Sbjct: 254 GSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEK 313

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M + GI P+   ++SVLSACSH GL +KG +YF  M   + + P   HY+CMVD+LGRAG
Sbjct: 314 MQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAG 373

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
            L+EA + I+ M  +   ++WG+LL +C+I++N+ELAE+A   + ++EP N G +VLLSN
Sbjct: 374 LLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSN 433

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
           IY+     + + R R +++E + KK+ G S++E+K +VH FMVG+RNH + VEIY    K
Sbjct: 434 IYAANDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYL---K 490

Query: 420 LENLVQEHDGTKRSDQKNSEEH-LNDTEV---------HSEKLAIAFGIINTSPGTEIVV 469
           LE+LV E    K+   K   EH L+D E          HSEKLA+ FGI+    G  I +
Sbjct: 491 LEDLVGE---MKKIGYKAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPHGAPIRI 547

Query: 470 MKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           MKNLRICGDCH F+KL S I +R+ IVRD  RFHHFK+G+CSC ++W
Sbjct: 548 MKNLRICGDCHSFMKLASSITEREIIVRDTNRFHHFKNGYCSCGEFW 594



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 148/301 (49%), Gaps = 16/301 (5%)

Query: 66  GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
           GM CH   ++ GL  D    N LM MY KCG V+  RKLFD++P + L++WN M+  + Q
Sbjct: 39  GMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQ 98

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG----- 180
           NG     L L+ +M+  G      T   V+ +CA   A     E +   Q +GF      
Sbjct: 99  NGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACA---AKCCVFECK---QLHGFALKTAL 152

Query: 181 -SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            SN F+  AL+++YA+CG +K A  +F+ MP ++ V+W++++ GY  +   E A+ LF  
Sbjct: 153 DSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHR 212

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
               G+  +     S LSAC+      +G +    +  K G+       + ++D+  + G
Sbjct: 213 AQAMGLEHNQFTISSALSACAARAALIEG-KQVQAVSCKTGIGSNIFVISSLIDMYAKCG 271

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE--PMNTGYYVLL 357
            + EA  +  S + E +  +W A+L     H     A + F K+ ++   P +  Y  +L
Sbjct: 272 IIEEAYTVFSS-VEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVL 330

Query: 358 S 358
           S
Sbjct: 331 S 331



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 2/172 (1%)

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
           +L S A   A   G+    QI   G  ++   +N L+NMY++CG ++ AR +FD MP ++
Sbjct: 26  LLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRS 85

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
           +VSW  ++G +  +G  E A+ LF +M K G         SV+ AC+ A       +  +
Sbjct: 86  LVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACA-AKCCVFECKQLH 144

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           G   K  L       T ++D+  + G + +A  + E M    D   W +++ 
Sbjct: 145 GFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSD-VTWSSMVA 195


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/435 (41%), Positives = 276/435 (63%), Gaps = 4/435 (0%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           + L+  + K G +D   +LFDQ+PEK +++W  M+ G+++NG +   L ++ +M   GV 
Sbjct: 285 STLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVR 344

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P+A T V  LS+CA +G    GL + + I+ NG      L  AL++MYA+CGN++ A  +
Sbjct: 345 PNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEV 404

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           F    +K++ +WT +I G+ IHGH E A+  F +M+ +GI+PD   F+++L+AC H+G  
Sbjct: 405 FGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQV 464

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           D GL +F  M+  Y ++P  +HYT +VD+LGR+GQL EAL  IE M + PD  +WGAL  
Sbjct: 465 DIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFC 524

Query: 326 ACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKD 385
           AC+ HK  ++A+ A  K++KLEP +TG Y+ LSN Y+     +   RVR++M+ R + K+
Sbjct: 525 ACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAALGQWEDAERVRVLMQNRGVHKN 584

Query: 386 PGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK-LENLVQEH--DGTKRSDQKNSEEHL 442
            G+S +E++G+VH F+ GD +H  +  I   L++ +   V++    GT+       +E  
Sbjct: 585 SGWSCIEVEGQVHRFVSGDHDHKDSKAICLKLEEIMAGAVKQGYIPGTEWVLHNMEQEEK 644

Query: 443 NDT-EVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATR 501
            D    H EKLA+AF +I TSPG  I ++KNL++CGDCH  +K  SKI  R+ ++RD  R
Sbjct: 645 EDVLGSHGEKLALAFALICTSPGMTIRIVKNLQVCGDCHSLMKYASKISQREIMLRDMKR 704

Query: 502 FHHFKSGFCSCKDYW 516
           FHHFK G CSC+D+W
Sbjct: 705 FHHFKDGSCSCRDHW 719



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 119/233 (51%), Gaps = 4/233 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  ++ G+  N    +A+S+F KM E+GV  N+ T++  L  C   G L  G+  H  
Sbjct: 313 VSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKY 372

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               GL L  ++G  L+ MY KCG+++   ++F +  +K + TW  MI G+A +G +   
Sbjct: 373 IKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQA 432

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           +  +++M   G+ PD V F+ +L++C H G   +GL     ++ + +   P + +   ++
Sbjct: 433 IACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLD-YCIEPSMKHYTLIV 491

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
           +M  R G LK+A    + MP     V W A+      H   ++A    +++LK
Sbjct: 492 DMLGRSGQLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFALNKLLK 544



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 135/331 (40%), Gaps = 71/331 (21%)

Query: 97  SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS 156
           S+++   +F+    K L T+NA+I G   N    + +  +R M   G+ PD +T+  VL 
Sbjct: 128 SINHSLAVFNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLK 187

Query: 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA---------------------- 194
           S A L +  +G+ +   I   G   + F+  +L++MY                       
Sbjct: 188 SMAGLFSTELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSG 247

Query: 195 --------------RCGNLKKARAIFDGMPRK---------------------------- 212
                         + G++KKA  +F  MP+K                            
Sbjct: 248 SSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQM 307

Query: 213 ---TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
               VVSWT ++ G+  +G  E A+ +F +ML+ G+RP+    VS LSAC+  G  + GL
Sbjct: 308 PEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGL 367

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
                +K+  GL       T +VD+  + G +  A E+      +     W  ++    I
Sbjct: 368 RIHKYIKDN-GLHLTEALGTALVDMYAKCGNIESASEVFGET-EQKSIRTWTVMIWGWAI 425

Query: 330 HKNVELAELAFGKVI--KLEPMNTGYYVLLS 358
           H + E A   F +++   ++P    +  LL+
Sbjct: 426 HGHSEQAIACFKQMMFAGIKPDEVVFLALLT 456



 Score = 45.1 bits (105), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 45/218 (20%), Positives = 97/218 (44%), Gaps = 8/218 (3%)

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
           ++  QI  +   S+  +   LI+  +   ++  + A+F+    K + ++ A+I G   + 
Sbjct: 99  QIHAQIIIHNLSSSSLITTQLISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLTTNS 158

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY 288
           H   A+  F  ML+SGI+PD   +  VL + +    T+ G+   + M  + G++      
Sbjct: 159 HFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMA-IHCMILRCGIELDSFVR 217

Query: 289 TCMVDLLGRAGQLNEALELIESMLVEPDGA----VWGALLGACKIHKNVELAELAFGKVI 344
             +VD+  +  +L  A ++ +      D      +W  L+  C    +++ A   F  + 
Sbjct: 218 VSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMP 277

Query: 345 KLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRL 382
           K E  N  +  L+   +++  ++D  M +   M E+ +
Sbjct: 278 KKE--NVSWSTLIDG-FAKNGDMDRAMELFDQMPEKNV 312


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/543 (38%), Positives = 304/543 (55%), Gaps = 37/543 (6%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE ++   +T  ++ALI+ +  N +  EA+  F  M + GV ++ V  +  L  C + 
Sbjct: 332 LFDEMLEKDMVT--WSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANL 389

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQ------------- 107
             + +G   H + +K G +   ++ N L+ MY KCG +   RKLFD+             
Sbjct: 390 LVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMI 449

Query: 108 ------------------VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
                             +PEK +++W++MISGYAQN L    L L++EM+  G  PD  
Sbjct: 450 SGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDET 509

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
           T V V+S+CA L A   G  V   I+ NG   N  L   LI+MY +CG ++ A  +F GM
Sbjct: 510 TLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGM 569

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
             K + +W A+I G  ++G  E ++ +F  M K  + P+   F+ VL AC H GL D+G 
Sbjct: 570 IEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQ 629

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
            +FY M + + +QP  +HY CMVDLLGRAG+L EA EL+  M + PD A WGALLGACK 
Sbjct: 630 HHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKK 689

Query: 330 HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYS 389
           H + E+      K+I+L+P + G++VLLSNIY+     D ++ +R MM + R+ K PG S
Sbjct: 690 HGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCS 749

Query: 390 YVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQ----KNSEEHLNDT 445
            +E  G +H F+ GD+ H     I  ML ++   ++    T   ++     + EE  +  
Sbjct: 750 MIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKESTL 809

Query: 446 EVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHF 505
             HSEKLAIAFG+IN SP T I +MKNLRIC DCH   KL+SK   R+ +VRD  RFHHF
Sbjct: 810 FRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCHTAAKLISKAFCRKIVVRDRHRFHHF 869

Query: 506 KSG 508
           + G
Sbjct: 870 EQG 872



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 163/355 (45%), Gaps = 74/355 (20%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF+ES  S   +V +N++++GY+    V EA  ++ +M E+ + I S +M+ L       
Sbjct: 270 VFNES--SVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSI-IASNSMIVL------- 319

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
                          FG+                 G V    KLFD++ EK ++TW+A+I
Sbjct: 320 ---------------FGMR----------------GLVVEACKLFDEMLEKDMVTWSALI 348

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           + + QN +    +  +  M  +GV  D V  V  LS+CA+L   ++G  +       G  
Sbjct: 349 ACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTE 408

Query: 181 SNPFLNNALINMYARCGNLKKAR-------------------------------AIFDGM 209
           S   L NALI MY++CG++  AR                               AIFD M
Sbjct: 409 SYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSM 468

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
           P K VVSW+++I GY  +   +  + LF EM  SG +PD T  VSV+SAC+     ++G 
Sbjct: 469 PEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQG- 527

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
           ++ +    + GL       T ++D+  + G +  ALE+   M +E   + W AL+
Sbjct: 528 KWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGM-IEKGISTWNALI 581



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 66/328 (20%), Positives = 132/328 (40%), Gaps = 46/328 (14%)

Query: 31  AVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90
           A +L+  M    +  ++ T   L+  C      W     H   +K G D D  V N L+ 
Sbjct: 197 AFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLIN 256

Query: 91  MYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVT 150
            +  C ++    ++F++      ++WN++++GY + G       +Y +M           
Sbjct: 257 CFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMP---------- 306

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
                               E+ I A+         N++I ++   G + +A  +FD M 
Sbjct: 307 --------------------ERSIIAS---------NSMIVLFGMRGLVVEACKLFDEML 337

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270
            K +V+W+A+I  +  +   E A++ F  M K G+  D    VS LSAC++  + + G +
Sbjct: 338 EKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMG-K 396

Query: 271 YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA---C 327
             + +  K G +        ++ +  + G +  A +L +   +  D   W +++     C
Sbjct: 397 LIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLL-DLISWNSMISGYLKC 455

Query: 328 KIHKNVE--LAELAFGKVIKLEPMNTGY 353
            +  N +     +    V+    M +GY
Sbjct: 456 NLVDNAKAIFDSMPEKDVVSWSSMISGY 483



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 98/257 (38%), Gaps = 47/257 (18%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWN----AMISGYAQNGLATHVLELYREMKSLG 143
           LM    K  SV+ G  L  + P+    TW     A    Y Q         LY+ M S  
Sbjct: 151 LMAPSRKSRSVNKGFLLLMRYPQAN--TWKMPAKASRRAYIQTNSPHFAFTLYKSMLSNY 208

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
           +  D  T+  ++ +C+   +     +V   +   GF S+ ++ N LIN ++ C N+  A 
Sbjct: 209 LGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDAC 268

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG 263
            +F+       VSW +I+ GY   G+ E A  ++ +M      P+ +   S         
Sbjct: 269 RVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM------PERSIIAS--------- 313

Query: 264 LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGAL 323
                                      M+ L G  G + EA +L + ML E D   W AL
Sbjct: 314 -------------------------NSMIVLFGMRGLVVEACKLFDEML-EKDMVTWSAL 347

Query: 324 LGACKIHKNVELAELAF 340
           +   + ++  E A   F
Sbjct: 348 IACFQQNEMYEEAIRTF 364


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/551 (38%), Positives = 313/551 (56%), Gaps = 53/551 (9%)

Query: 13  VCYNALISGYVLNSLVSEA-------VSLFGKMREQGVEINSVTMLCLLPICVDPGYLWL 65
           V +N+LISGY  N   +EA       + LF +M  Q  + + +T+  +L  C   G L  
Sbjct: 182 VSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEF 240

Query: 66  GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
           G   H   +  G + D +  N L+ MY KCG++   +++F  +  K  ++WN+MI+ Y Q
Sbjct: 241 GKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQ 300

Query: 126 NGLATHVLELYREMKSL-------------------------------GVCPDAVTFVGV 154
           NG     L+++  MK+                                GV PD  T + +
Sbjct: 301 NGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSI 360

Query: 155 LSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTV 214
           L  C+ L A   G E+   I   G  S+  + N LI MY++CG+L+ +  +F  M  K V
Sbjct: 361 LPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDV 420

Query: 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYG 274
           V+WTA+I   G++G G+ AV+ F EM  +GI PD  AFV+++ ACSH+GL ++GL YF+ 
Sbjct: 421 VTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHR 480

Query: 275 MKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVE 334
           MK  Y ++P  EHY C+VDLL R+  L++A + I SM ++PD ++WGALL AC++  + E
Sbjct: 481 MKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTE 540

Query: 335 LAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELK 394
           +AE    ++I+L P +TGYYVL+SNIY+     D +  +R  ++ R LKKDPG S++E++
Sbjct: 541 IAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQ 600

Query: 395 GRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEV------- 447
            +V++F  G +   Q  E+ ++L  L  L+      K     N +  L+D +        
Sbjct: 601 NKVYVFGTGTKFFEQFEEVNKLLGMLAGLM-----AKEGYIANLQFVLHDIDEDEKRDIL 655

Query: 448 --HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHF 505
             HSE+LAIAFG++NT PGT + VMKNLR+C DCH   K +SKIV R+ +VRDA RFH F
Sbjct: 656 CGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVF 715

Query: 506 KSGFCSCKDYW 516
           K G CSC DYW
Sbjct: 716 KDGACSCGDYW 726



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 169/366 (46%), Gaps = 39/366 (10%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N++I     N L SEA+SL+ + +   ++ ++ T   ++  C       +    H   +
Sbjct: 83  WNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVL 142

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             G   D  +GN L+ MY +   +D  RK+F+++P + +++WN++ISGY  NG     LE
Sbjct: 143 DMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALE 202

Query: 135 LYREMKSL------GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
           +Y +   L         PD +T   +L +C HLG    G  V   +  +G+  +   +N 
Sbjct: 203 IYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNI 262

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG-------------------- 228
           LINMYA+CGNL  ++ +F GM  K  VSW ++I  Y  +G                    
Sbjct: 263 LINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITW 322

Query: 229 --------HGE---VAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
                   H E   + +++   M   G+ PD    +S+L  CS      +G E  +G   
Sbjct: 323 NTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKE-IHGCIF 381

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
           K GL+        ++++  + G L  + ++ + M  + D   W AL+ AC ++   + A 
Sbjct: 382 KLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTALISACGMYGEGKKAV 440

Query: 338 LAFGKV 343
            AFG++
Sbjct: 441 RAFGEM 446



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 136/278 (48%), Gaps = 13/278 (4%)

Query: 109 PEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGL 168
           P   +  WN++I     NGL +  L LY E + + + PD  TF  V+++CA L    +  
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
            +  ++   GFGS+ ++ NALI+MY R  +L KAR +F+ MP + VVSW ++I GY  +G
Sbjct: 136 SIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 195

Query: 229 HGEVAVQLFDEMLK------SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQ 282
           +   A++++ + +K      +  +PD     S+L AC H G  + G +Y +      G +
Sbjct: 196 YWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFG-KYVHDYMITSGYE 254

Query: 283 PGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGK 342
                   ++++  + G L  + E+   M  + D   W +++    I        L   +
Sbjct: 255 CDTTASNILINMYAKCGNLLASQEVFSGMKCK-DSVSWNSMINV-YIQNGKMGDSLKVFE 312

Query: 343 VIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380
            +K   + T   ++ S ++SE  NL     +RM+ R R
Sbjct: 313 NMKARDIITWNTIIASCVHSEDCNLG----LRMISRMR 346



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 131/257 (50%), Gaps = 7/257 (2%)

Query: 4   ESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL 63
           E++K+  + + +N +I+  V +   +  + +  +MR +GV  +  TML +LP+C      
Sbjct: 312 ENMKARDI-ITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAK 370

Query: 64  WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGY 123
             G   H    K GL+ D  VGN L+ MY KCGS+    ++F  +  K ++TW A+IS  
Sbjct: 371 RQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISAC 430

Query: 124 AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP 183
              G     +  + EM++ G+ PD V FV ++ +C+H G    GL    +++ + +   P
Sbjct: 431 GMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKD-YKIEP 489

Query: 184 FLNN--ALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFDEM 240
            + +   ++++ +R   L KA      MP K   S W A++    + G  E+A ++ + +
Sbjct: 490 RIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERI 549

Query: 241 LKSGIRPDGTAFVSVLS 257
           ++  + PD T +  ++S
Sbjct: 550 IE--LNPDDTGYYVLVS 564


>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 642

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/493 (40%), Positives = 290/493 (58%), Gaps = 13/493 (2%)

Query: 30  EAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLM 89
           EA+    +MR  GV  NS T   +L  C  PG L      H   +K GLD D  V + L+
Sbjct: 157 EALRFLVEMRRDGVAANSYTFSSVLGACGTPGVL---AAMHADIIKVGLDSDVFVRSSLI 213

Query: 90  TMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
             Y+K G +D GR +FD++    L+ WN++I+G+AQ+G     +EL+  MK  G   +  
Sbjct: 214 DAYMKLGDLDSGRGVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQG 273

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQAN--GFGSNPFLNNALINMYARCGNLKKARAIFD 207
           T   VL +C  +    V LEV +Q+ A+   +  +  L+NAL++MY +CG L  A A+F 
Sbjct: 274 TLTSVLRACTGM----VMLEVGRQVHAHVLKYDRDLILHNALLDMYCKCGCLLDADALFS 329

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            M  + V+SW+ +I G   +G    A+++FD M   G  P+    V VL ACSHAGL + 
Sbjct: 330 RMHDRDVISWSTMISGLAQNGRSVEALKVFDLMKAEGPTPNNITMVGVLFACSHAGLVED 389

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           G  YF  M   +G+QP  EH  CMVDLLGRAG+L+EA++ I  M  EPD  +W  LLGAC
Sbjct: 390 GWHYFRSMDKLFGIQPEREHCNCMVDLLGRAGKLDEAMKFIGEMKFEPDSVIWRTLLGAC 449

Query: 328 KIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPG 387
           ++HKN  LA  A  +++KLEP + G  +LLSNIY++ R      +    MR++ +KK+PG
Sbjct: 450 RMHKNATLASYAATEILKLEPEDQGARILLSNIYADLRQWSNAEKSWKTMRDQGVKKEPG 509

Query: 388 YSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD----QKNSEEHLN 443
            S++EL   VH+F+ G+ +H  +  I + L++L    ++     +++       +E+  +
Sbjct: 510 RSWIELGKLVHVFIAGELSHPCSDRIVQELNRLIRRAKDLGYVPQTEFVLQDLGTEQKED 569

Query: 444 DTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFH 503
             + HSEKLAIAFG +N+  G  + +MKNLRICGDCH F KLVSK   +  I+RD  RFH
Sbjct: 570 LLKYHSEKLAIAFGTMNSMEGKPVRIMKNLRICGDCHAFAKLVSKTEGKAIIIRDPVRFH 629

Query: 504 HFKSGFCSCKDYW 516
           HF+ G CSC DYW
Sbjct: 630 HFQHGVCSCGDYW 642



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 122/245 (49%), Gaps = 8/245 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE +  T   V +N++I+G+  +     A+ LF +M+E G   N  T+  +L  C   
Sbjct: 228 VFDEMV--TCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGM 285

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L +G   H   +K+  D D  + N L+ MY KCG +     LF ++ ++ +I+W+ MI
Sbjct: 286 VMLEVGRQVHAHVLKY--DRDLILHNALLDMYCKCGCLLDADALFSRMHDRDVISWSTMI 343

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SG AQNG +   L+++  MK+ G  P+ +T VGVL +C+H G    G    + +    FG
Sbjct: 344 SGLAQNGRSVEALKVFDLMKAEGPTPNNITMVGVLFACSHAGLVEDGWHYFRSMD-KLFG 402

Query: 181 SNPFLN--NALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLF 237
             P     N ++++  R G L +A      M      V W  ++G   +H +  +A    
Sbjct: 403 IQPEREHCNCMVDLLGRAGKLDEAMKFIGEMKFEPDSVIWRTLLGACRMHKNATLASYAA 462

Query: 238 DEMLK 242
            E+LK
Sbjct: 463 TEILK 467



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 120/251 (47%), Gaps = 10/251 (3%)

Query: 17  ALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCH---CIC 73
           ++ S   L+   + A++L   +   GV  + V++  L+ +CV  G +  G   H    +C
Sbjct: 36  SIFSRLCLDGPFTAALALLPDIAAAGVRADPVSLCRLIKLCVRHGTVGDGRAIHRHVSLC 95

Query: 74  VKFGLDL---DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQN-GLA 129
              G         V N L++MY K G +D   +LF  +P++ +++W  +++  A   G  
Sbjct: 96  AHGGGGATHGSLFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRK 155

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              L    EM+  GV  ++ TF  VL +C   G   V   +   I   G  S+ F+ ++L
Sbjct: 156 KEALRFLVEMRRDGVAANSYTFSSVLGAC---GTPGVLAAMHADIIKVGLDSDVFVRSSL 212

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           I+ Y + G+L   R +FD M    +V W +II G+   G G  A++LF  M +SG   + 
Sbjct: 213 IDAYMKLGDLDSGRGVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQ 272

Query: 250 TAFVSVLSACS 260
               SVL AC+
Sbjct: 273 GTLTSVLRACT 283



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 96/215 (44%), Gaps = 12/215 (5%)

Query: 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ-- 175
           ++ S    +G  T  L L  ++ + GV  D V+   ++  C   G    G  + + +   
Sbjct: 36  SIFSRLCLDGPFTAALALLPDIAAAGVRADPVSLCRLIKLCVRHGTVGDGRAIHRHVSLC 95

Query: 176 ----ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYG-IHGHG 230
                     + F++N+L++MYA+ G L  A  +F GMP++ VVSWT ++       G  
Sbjct: 96  AHGGGGATHGSLFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRK 155

Query: 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC 290
           + A++   EM + G+  +   F SVL AC   G+    L   +    K GL       + 
Sbjct: 156 KEALRFLVEMRRDGVAANSYTFSSVLGACGTPGV----LAAMHADIIKVGLDSDVFVRSS 211

Query: 291 MVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           ++D   + G L+    + + M V  D  VW +++ 
Sbjct: 212 LIDAYMKLGDLDSGRGVFDEM-VTCDLVVWNSIIA 245


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/511 (37%), Positives = 299/511 (58%), Gaps = 10/511 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N++I  YV      +A+ LF  M++QG++ + V  + +L  C    +       H  
Sbjct: 429 ISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQC 488

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             + GL     V   L+ MY K G +D    +  ++ E+ +  WN +I+GYA +G +   
Sbjct: 489 VEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREA 548

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           LE Y++++   +  D VTF+ VL++C    + + G  +       G  S+  + NAL NM
Sbjct: 549 LEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNM 608

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++CG+++ AR IFD MP ++ VSW  ++  Y  HG  E  ++L  +M + G++ +G  F
Sbjct: 609 YSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITF 668

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           VSVLS+CSHAGL  +G +YF+ + +  G++   EHY C+VDLLGRAG+L EA + I  M 
Sbjct: 669 VSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMP 728

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           +EP    W +LLGAC++ K+++  +LA GK+++L+P N+   V+LSNIYSE  +     +
Sbjct: 729 LEPGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPGNSSASVVLSNIYSERGDWKNAAK 788

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENL-VQEHDGTK 431
           +R  M  RR+KK PG S +++K +VH F V D +H +  EIY   DK+E L     +   
Sbjct: 789 LRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIY---DKVEELCFAMREAGY 845

Query: 432 RSDQK------NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
             D K      + E+  +    HSEKLAIAFG+I+T   + + + KNLR+C DCH   K 
Sbjct: 846 VPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPETSSLHIFKNLRVCEDCHTATKF 905

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +SKI  R+ +VRD  RFHHF+ G CSCKDYW
Sbjct: 906 ISKITGREIVVRDNHRFHHFRDGSCSCKDYW 936



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 119/426 (27%), Positives = 199/426 (46%), Gaps = 55/426 (12%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSE-AVSLFGKMREQGVEINSVTMLCLLPICVD 59
           VF+E  +     V +NA++  Y L     + AV LF +M  +GV+ N +T L +L   VD
Sbjct: 115 VFEEMAEKN--VVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVD 172

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
           P  L  G   H    +    LD  V   L+  Y KCGS+   RK+FD +P + + TWN+M
Sbjct: 173 PDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSM 232

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           IS Y+ +  +     +++ M+  G   D VTF+ +L +C +      G  V + I    F
Sbjct: 233 ISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSF 292

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             + F+  ALI MYARC + + A  +F  M +  +++W+AII  +  HGH   A++ F  
Sbjct: 293 ELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRM 352

Query: 240 MLKSGIRPDGTAFVSVLSACS-----------HAGLTDKGLEYFYGMKNK----YGLQPG 284
           M + GI P+   F+S+L+  +           H  +T+ GL+    M+N     YG    
Sbjct: 353 MQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCES 412

Query: 285 PE---------------HYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGA 326
           P+                +  M+ +  +  + ++AL+L  +M    ++PD   +  +LGA
Sbjct: 413 PDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGA 472

Query: 327 CKI----------HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMM 376
           C I          H+ VE + L    +++           L N+Y++A  LD    +   
Sbjct: 473 CTIGSHGRTRKLVHQCVEESGLGGSPLVQTS---------LVNMYAKAGELDVAEVILQE 523

Query: 377 MRERRL 382
           M E+++
Sbjct: 524 MDEQQI 529



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 185/376 (49%), Gaps = 12/376 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +IS Y       EA++LF  M  +GV  N++T++ +L  C     L  G+  H +
Sbjct: 24  VSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITLVAVLNSCGSFRELRDGILVHAL 83

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ G   +  V   L+ MY KCG++   + +F+++ EK ++TWNAM+  Y+  G    +
Sbjct: 84  SLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVYSLQGCCWKL 143

Query: 133 -LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            +EL+  M   GV  + +TF+ VL+S     A   G  +   ++ +    + F+N AL+N
Sbjct: 144 AVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVN 203

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
            Y +CG+L  AR +FDGMP ++V +W ++I  Y I      A  +F  M + G R D   
Sbjct: 204 TYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVT 263

Query: 252 FVSVLSACSHAGLTDKG---LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
           F+S+L AC +      G    E       +  L  G    T ++ +  R     +A ++ 
Sbjct: 264 FLSILDACVNPETLQHGKHVRESISETSFELDLFVG----TALITMYARCRSPEDAAQVF 319

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPM--NTGYYVLLSNIYSEARN 366
             M  + +   W A++ A   H +   A L + ++++ E +  N   ++ L N ++    
Sbjct: 320 GRM-KQTNLITWSAIITAFADHGHCGEA-LRYFRMMQQEGILPNRVTFISLLNGFTTPSG 377

Query: 367 LDGIMRVRMMMRERRL 382
           L+ + R+ +++ E  L
Sbjct: 378 LEELSRIHLLITEHGL 393



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 125/254 (49%), Gaps = 3/254 (1%)

Query: 91  MYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVT 150
           MY +CGS+      F ++  + +++WN MIS Y+        L L+  M   GV P+A+T
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
            V VL+SC        G+ V       GF  N  +  AL+NMY +CG L  A+++F+ M 
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMA 120

Query: 211 RKTVVSWTAIIGGYGIHG-HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
            K VV+W A++G Y + G   ++AV+LF  ML  G++ +   F++VL++        KG 
Sbjct: 121 EKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKG- 179

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
           ++ +    +          T +V+   + G L +A ++ + M     G  W +++ A  I
Sbjct: 180 KFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVG-TWNSMISAYSI 238

Query: 330 HKNVELAELAFGKV 343
            +    A   F ++
Sbjct: 239 SERSGEAFFIFQRM 252


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/531 (40%), Positives = 309/531 (58%), Gaps = 40/531 (7%)

Query: 24  LNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDF 82
           +NSL  EA+  F  M   G VE N  T  C+L  C     +  G   H   VK GL  D 
Sbjct: 101 VNSL--EALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIEEGKQLHGFVVKLGLVSDE 158

Query: 83  SVGNCLMTMYVKCGSVD--------------------------------YGRKLFDQVPE 110
            V + L+ +YV CG++                                   R+LFD +P 
Sbjct: 159 FVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPN 218

Query: 111 KGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEV 170
           K +++WN MISG AQNG     +E++ +M+   V P+ VT V VL + + LGA  +G  V
Sbjct: 219 KSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELGKWV 278

Query: 171 EQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGH 229
               + N    +  L +ALI+MY++CG++ KA  +F+G+  +K  ++W+AIIGG  +HG 
Sbjct: 279 HLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGR 338

Query: 230 GEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYT 289
              A+  F  M ++G+ P    ++ VLSACSHAGL ++G   +Y M N  GL P  EHY 
Sbjct: 339 ARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVGLLPRIEHYG 398

Query: 290 CMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPM 349
           CMVDLLGRAG L EA +LI +M V+PD  +  ALLGACK+H N+E+ E     ++   P 
Sbjct: 399 CMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKMHGNIEMGERIAKILMGWYPH 458

Query: 350 NTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQ 409
           ++G YV LSN+++   N +G+++VR+ M+E  ++KDPG S++EL G +H F+V D +H +
Sbjct: 459 DSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDPGCSWIELDGVIHEFLVEDDSHPR 518

Query: 410 TVEIYRML----DKLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGT 465
              I+ ML    D+L ++    + T+     + +E  +    HSEK+AIAFG+I+T P T
Sbjct: 519 AEGIHSMLEEMSDRLRSVGYRPNTTQVLLNMDEKEKQSALHYHSEKIAIAFGLISTRPQT 578

Query: 466 EIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            + ++KNLR+C DCH  IKLVSKI +R+ IVRD  RFHHF++G CSC DYW
Sbjct: 579 PLQIVKNLRVCEDCHSSIKLVSKIYNRKIIVRDRKRFHHFENGSCSCMDYW 629



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 121/229 (52%), Gaps = 5/229 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +N +ISG   N    EA+ +F  M+   V  N VT++ +LP     G + LG   H 
Sbjct: 221 VVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHL 280

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP-EKGLITWNAMISGYAQNGLAT 130
              K  +++D  +G+ L+ MY KCGS+D   ++F+ +  +K  ITW+A+I G A +G A 
Sbjct: 281 FAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRAR 340

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--A 188
             L+ +  M+  GV P  V ++GVLS+C+H G    G  +   +  N  G  P + +   
Sbjct: 341 DALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHM-VNIVGLLPRIEHYGC 399

Query: 189 LINMYARCGNLKKARAIFDGMPRKT-VVSWTAIIGGYGIHGHGEVAVQL 236
           ++++  R G L++A  +   MP K   V   A++G   +HG+ E+  ++
Sbjct: 400 MVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKMHGNIEMGERI 448



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 120/273 (43%), Gaps = 41/273 (15%)

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT--HVLEL-----YREMKSLG-VCPDAV 149
           + Y RK F Q+      +WN +I   A +      HV  L     +  M + G V P+  
Sbjct: 65  IKYARKFFSQIHHPNCFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKF 124

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA------- 202
           TF  VL +CA L     G ++   +   G  S+ F+ + L+ +Y  CG +K A       
Sbjct: 125 TFPCVLKACAKLARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQT 184

Query: 203 -------------------------RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
                                    R +FD MP K+VVSW  +I G   +GH + A+++F
Sbjct: 185 RLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMF 244

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
            +M    + P+    VSVL A S  G  + G ++ +    K  ++      + ++D+  +
Sbjct: 245 HDMQLGDVPPNYVTLVSVLPAVSRLGAIELG-KWVHLFAEKNEIEIDDVLGSALIDMYSK 303

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
            G +++A+++ E +  + +   W A++G   +H
Sbjct: 304 CGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMH 336


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/509 (37%), Positives = 295/509 (57%), Gaps = 4/509 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V + ++I+GYV +    EA+  F +M+  G+  +++ +   +  C     +  G   H 
Sbjct: 411 VVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHA 470

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                G   D S+ N L+ +Y +CG        F+ +  K  ITWN +ISG+AQ+GL   
Sbjct: 471 RVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEE 530

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L+++ +M   G   +  TFV  +S+ A+L     G ++  ++   G+ S   ++NALI+
Sbjct: 531 ALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALIS 590

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +Y +CG+++ A+  F  M ++  VSW  II     HG G  A+ LFD+M + G++P    
Sbjct: 591 LYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVT 650

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           FV VL+ACSH GL ++GL YF  M N++G+ P P+HY C+VD+LGRAGQL+ A   +E M
Sbjct: 651 FVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEM 710

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            +  D  VW  LL ACK+HKN+E+ E A   +++LEP ++  YVLLSN Y+         
Sbjct: 711 PIPADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRD 770

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML----DKLENLVQEH 427
           ++R +M++R ++K+PG S++E+K  VH F VGDR H    +IY  L    D+L  +  + 
Sbjct: 771 QIRKIMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLADQIYNFLSHLNDRLYKIGYKQ 830

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           +      +K  E       VHSEKLA+AFG+++      + V+KNLR+C DCH ++K  S
Sbjct: 831 ENYHLFHEKEKEGKDPTAFVHSEKLAVAFGLMSLPSCMPLRVIKNLRVCNDCHTWMKFTS 890

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            ++ R+ ++RD  RFHHF +G CSC DYW
Sbjct: 891 GVMGREIVLRDVYRFHHFNNGSCSCGDYW 919



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 175/377 (46%), Gaps = 42/377 (11%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V +N LISG+        A+ +F +M+  G+  +SVT+  LL  C   G L  G   H 
Sbjct: 209 SVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHS 268

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K G+ LD+ +   L+ +YVK G ++   ++FD      ++ WN M+  Y Q      
Sbjct: 269 YLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAK 328

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
             +++  M + GV P+  T+  +L +C H G   +G ++      NGF S+ +++  LI+
Sbjct: 329 SFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLID 388

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY++ G L KA+ I D +  K VVSWT++I GY  H   + A++ F EM   GI PD   
Sbjct: 389 MYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIG 448

Query: 252 FVSVLSACS-----------HA------------------------GLTDKGLEYFYGMK 276
             S +SAC+           HA                        G++ +    F  ++
Sbjct: 449 LASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIE 508

Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELA 336
           +K G+      +  ++    ++G   EAL++   M ++  GA +        I  +  LA
Sbjct: 509 HKEGIT-----WNGLISGFAQSGLYEEALKVF--MKMDQAGAKYNVFTFVSSISASANLA 561

Query: 337 ELAFGKVIKLEPMNTGY 353
           ++  GK I    + TGY
Sbjct: 562 DIKQGKQIHARVIKTGY 578



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/298 (31%), Positives = 152/298 (51%), Gaps = 4/298 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLW-LGMCCHCIC 73
           +N  ++G++      + + LF     Q + + +V   C L  C   G  W L    H   
Sbjct: 9   FNRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVDFACALRACRGSGRRWPLVPEIHAKA 68

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           +  GL     +GN L+ +Y K G V   R++F+++  +  ++W A++SGYAQNGL    +
Sbjct: 69  IICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAV 128

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
            LYREM   GV P       +LS+C       +G  +  Q+   GF S  F+ NALI++Y
Sbjct: 129 RLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLY 188

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
            RC + + A  +F  M     V++  +I G+   GHG+ A+ +FDEM  SG+ PD     
Sbjct: 189 LRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIA 248

Query: 254 SVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
           S+L+ACS  G   KG + + Y +K    L    E    ++DL  ++G + EAL++ +S
Sbjct: 249 SLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIME--GSLLDLYVKSGDIEEALQIFDS 304



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 162/331 (48%), Gaps = 4/331 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF+E   S    V + A++SGY  N L  EAV L+ +M   GV      +  +L  C   
Sbjct: 99  VFEE--LSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKT 156

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
               LG   H    K G   +  VGN L+++Y++C S     ++F  +     +T+N +I
Sbjct: 157 ELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLI 216

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SG+AQ G     L ++ EM+  G+ PD+VT   +L++C+ +G    G ++   +   G  
Sbjct: 217 SGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMS 276

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            +  +  +L+++Y + G++++A  IFD   R  VV W  ++  YG       +  +F  M
Sbjct: 277 LDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRM 336

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           L +G+RP+   +  +L  C+H G    G E  + +  K G Q        ++D+  + G 
Sbjct: 337 LAAGVRPNKFTYPCMLRTCTHTGEIGLG-EQIHSLTIKNGFQSDMYVSGVLIDMYSKYGW 395

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHK 331
           L++A  +++ M+ E D   W +++     H+
Sbjct: 396 LDKAQRILD-MIEEKDVVSWTSMIAGYVQHE 425


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/509 (40%), Positives = 304/509 (59%), Gaps = 47/509 (9%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA++SGY  N L  EA+ LF +M   G   NSVT              W        
Sbjct: 137 VSWNAMLSGYAQNGLAEEALRLFDEM--LGAYRNSVT--------------W-------- 172

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
                        N +++ Y++ G +D  RKLF+ +P + ++TWN+MI+GYAQNG +   
Sbjct: 173 -------------NAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMA 219

Query: 133 LELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
           +EL++EM  +  + PD VT V V+S+C HLGA  +G  V + +  N    +   +NA+I 
Sbjct: 220 IELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIF 279

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY+RCG+++ A+ +F  M  + VVS+  +I G+  HGHG  A+ L   M + GI PD   
Sbjct: 280 MYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVT 339

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+ VL+ACSHAGL ++G + F  +K+     P  +HY CMVDLLGR G+L +A   +E M
Sbjct: 340 FIGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKRTMERM 394

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            +EP   V+G+LL A +IHK VEL ELA  K+ +LEP N+G ++LLSNIY+ A     + 
Sbjct: 395 PMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVE 454

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE--HDG 429
           R+R  M++  +KK  G+S+VE  G++H F+V DR+H ++ +IY++L +L   ++E  +  
Sbjct: 455 RIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIA 514

Query: 430 TKRSDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
            K    ++ EE   +  V  HSEKLAI + ++ +  G  I V+KNLR+C DCH  IK++S
Sbjct: 515 DKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMIS 574

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K+  R  IVRD  RFH F  G CSCKDYW
Sbjct: 575 KLEGRVIIVRDNNRFHCFNDGLCSCKDYW 603



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 113/227 (49%), Gaps = 39/227 (17%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
             ++T Y K   ++  R+ FD +PE+ +++WNAM+SGYAQNGLA   L L+ EM  LG  
Sbjct: 109 TAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEM--LGAY 166

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
            ++VT+                                   NA+I+ Y R G+L  AR +
Sbjct: 167 RNSVTW-----------------------------------NAMISAYMRVGDLDSARKL 191

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS-GIRPDGTAFVSVLSACSHAGL 264
           F+ MP + VV+W ++I GY  +G   +A++LF EM+ +  + PD    VSV+SAC H G 
Sbjct: 192 FNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGA 251

Query: 265 TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            + G  +      +  ++     +  M+ +  R G + +A  + + M
Sbjct: 252 LELG-NWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEM 297



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 104/247 (42%), Gaps = 65/247 (26%)

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
           V+ +Y +M+  GV PDA  +  ++ S     A + G+     +   G GS+ F+ NA+I+
Sbjct: 14  VVLMYEQMQGCGVRPDAFVYPILIKS-----AGTGGIGFHAHVLKLGHGSDAFVRNAVID 68

Query: 192 MYAR---------------------------------------------CGNLKKARAIF 206
           MYAR                                               +L+ AR  F
Sbjct: 69  MYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYF 128

Query: 207 DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD 266
           D MP ++VVSW A++ GY  +G  E A++LFDEML  G   +   + +++SA    G  D
Sbjct: 129 DCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEML--GAYRNSVTWNAMISAYMRVGDLD 186

Query: 267 KGLEYFYGMKNKYGLQPGPE--HYTCMVDLLGRAGQLNEALELIESML----VEPDGAVW 320
              + F  M       PG     +  M+    + GQ   A+EL + M+    + PD    
Sbjct: 187 SARKLFNTM-------PGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTM 239

Query: 321 GALLGAC 327
            +++ AC
Sbjct: 240 VSVISAC 246



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 91/239 (38%), Gaps = 62/239 (25%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF E   +T   V YN LISG+  +    EA++L   M+E G+E + VT + +L  C   
Sbjct: 293 VFQE--MATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHA 350

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L                                   + GRK+F+ + +  +  +  M+
Sbjct: 351 GLL-----------------------------------EEGRKVFESIKDPAIDHYACMV 375

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
               + G    + +  R M+ + + P A  +  +L++            + +Q++     
Sbjct: 376 DLLGRVG---ELEDAKRTMERMPMEPHAGVYGSLLNAS----------RIHKQVELGELA 422

Query: 181 SNPFL----NNA-----LINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIH 227
           +N       +N+     L N+YA  G  K    I + M +   K    W+ +  G  +H
Sbjct: 423 ANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLH 481


>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
 gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
          Length = 1108

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/518 (39%), Positives = 293/518 (56%), Gaps = 5/518 (0%)

Query: 1    VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
            VFDE        V + A++S    N    E   LF +M+ +GV  +  T+   L  C+D 
Sbjct: 594  VFDEMDHGD--VVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDS 651

Query: 61   GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
              L LG   H    + GL+ D +V N L+ MY  CG        F+ +  + L++WN M 
Sbjct: 652  TTLGLGKIIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMS 711

Query: 121  SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            + YAQ GLA   + L+R M+  GV PD +TF   L+        S G         +G  
Sbjct: 712  AAYAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHGLAAESGLD 771

Query: 181  SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            S+  +   L+ +YA+CG L +A ++F G  + TVV   AIIG    HG  E AV++F +M
Sbjct: 772  SDVSVATGLVKLYAKCGKLDEAISLFRGACQWTVVLLNAIIGALAQHGFSEEAVKMFWKM 831

Query: 241  LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
             + G+RPD    VS++SAC HAG+ ++G   F  MK  +G+ P  EHY C VDLLGRAGQ
Sbjct: 832  QQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQ 891

Query: 301  LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
            L  A ++I  M  E +  VW +LLG CK+  + EL E    ++++L+P N+  +V+LSNI
Sbjct: 892  LEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNI 951

Query: 361  YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
            Y            R  + ++ +K  PG S++E+  +VH F+ GDR+H QT EIY +LDKL
Sbjct: 952  YCATGKWKDADVDRKKLLDQNVKNAPGMSWLEIGKQVHEFVAGDRSHPQTDEIYVVLDKL 1011

Query: 421  ENLVQEHDGTKRSDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGD 478
            E L+    G +     ++E+ L +  +  HSE++AIAFG+I T P T + ++KNLR+CGD
Sbjct: 1012 E-LLMRRAGYEADKGLDAEDELKEKALGYHSERIAIAFGLIATPPDTTLKIVKNLRVCGD 1070

Query: 479  CHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            CH   K +S I+ R+ IVRD+ RFHHF +G CSCKD W
Sbjct: 1071 CHTATKYISMIMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 170/341 (49%), Gaps = 16/341 (4%)

Query: 27  LVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVG 85
           ++ +  SL G +R ++  ++   T   LL  CVD   L  G   H +    GL+    +G
Sbjct: 6   IIRQLCSLSGAVRVDRAADLQEYT--ALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLG 63

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM-KSLGV 144
           NCL+ MYV+CGS++    +F ++ E+ +++W A+IS  AQ+G       L+R M      
Sbjct: 64  NCLINMYVRCGSLEEAHAIFSKMEERNVVSWTALISANAQSGAFARAFALFRTMLLESSA 123

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF----GSNPFLNNALINMYARCGNLK 200
            P++ T V +L++CA+    ++G  +   I   G      +   + NA+INMYA+CG+ +
Sbjct: 124 APNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPE 183

Query: 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHG-EVAVQLFDEMLKSGIRPDGTAFVSVLSAC 259
            A A+F  +P K VVSWTA+ G Y         A+++F EML   + P+   F++ L AC
Sbjct: 184 DAIAVFLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGAC 243

Query: 260 SHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV--EPDG 317
           +   L D    + + + ++ GL   P     ++++ G+ G    A  + ++M    E D 
Sbjct: 244 T--SLRDG--TWLHSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDL 299

Query: 318 AVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
             W A++ A  +        +A  + ++LE M      L++
Sbjct: 300 VSWNAMISA-SVEAGRHGDAMAIFRRLRLEGMRPNSVTLIT 339



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 156/343 (45%), Gaps = 6/343 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF E    +   V +N ++  Y  N    EA     +M + GV  ++++   +L  C   
Sbjct: 495 VFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSC--- 551

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
            Y         +C+         +   L++M+ +C  ++  R +FD++    +++W AM+
Sbjct: 552 -YCSQEAQVLRMCILESGYRSACLETALISMHGRCRELEQARSVFDEMDHGDVVSWTAMV 610

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           S  A+N     V  L+R M+  GV PD  T    L +C       +G  +   +   G  
Sbjct: 611 SATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTTLGLGKIIHACVTEIGLE 670

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           ++  + NAL+NMY+ CG+ ++A + F+ M  + +VSW  +   Y   G  + AV LF  M
Sbjct: 671 ADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRHM 730

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
              G++PD   F + L+    + L   G + F+G+  + GL       T +V L  + G+
Sbjct: 731 QLEGVKPDKLTFSTTLNVSGGSALVSDG-KLFHGLAAESGLDSDVSVATGLVKLYAKCGK 789

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
           L+EA+ L      +    +  A++GA   H   E A   F K+
Sbjct: 790 LDEAISLFRGA-CQWTVVLLNAIIGALAQHGFSEEAVKMFWKM 831



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 161/341 (47%), Gaps = 13/341 (3%)

Query: 13  VCYNALISGYVLNS-LVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V + A+   Y        +A+ +F +M  Q +  N +T +  L  C     L  G   H 
Sbjct: 198 VSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTS---LRDGTWLHS 254

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP---EKGLITWNAMISGYAQNGL 128
           +  + GL  D   GN L+ MY KCG  +    +F  +    E  L++WNAMIS   + G 
Sbjct: 255 LLHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISASVEAGR 314

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAH-SVGLEVEQQIQANGFGSNPFLNN 187
               + ++R ++  G+ P++VT + +L++ A  G       +   +I  +G+  +  + N
Sbjct: 315 HGDAMAIFRRLRLEGMRPNSVTLITILNALAASGVDFGAARKFHGRIWESGYLRDVVVGN 374

Query: 188 ALINMYARCGNLKKARAIFDGMPRK-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           A+I+MYA+CG    A  +F  +  K  V+SW  ++G           V  F  ML +GI 
Sbjct: 375 AIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGID 434

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           P+  +F+++L+ACS++   D G +    +  +          T +V + G+ G + EA  
Sbjct: 435 PNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSIAEAEL 494

Query: 307 LIESMLVEPDGAV-WGALLGACKIHKNVELAELAFGKVIKL 346
           + + M +     V W  +LGA   +   + ++ AFG ++++
Sbjct: 495 VFKEMPLPSRSLVTWNVMLGA---YAQNDRSKEAFGALMEM 532



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 126/252 (50%), Gaps = 5/252 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGY-LWLGMCCHC 71
           V +NA+IS  V      +A+++F ++R +G+  NSVT++ +L      G         H 
Sbjct: 300 VSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGVDFGAARKFHG 359

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK-GLITWNAMISGYAQNGLAT 130
              + G   D  VGN +++MY KCG       +F ++  K  +I+WN M+          
Sbjct: 360 RIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFG 419

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG-SNPFLNNAL 189
            V+  +  M   G+ P+ V+F+ +L++C++  A   G ++   I           +   L
Sbjct: 420 KVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATML 479

Query: 190 INMYARCGNLKKARAIFDGM--PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           ++MY +CG++ +A  +F  M  P +++V+W  ++G Y  +   + A     EML+ G+ P
Sbjct: 480 VSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLP 539

Query: 248 DGTAFVSVLSAC 259
           D  +F SVLS+C
Sbjct: 540 DALSFTSVLSSC 551


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/542 (38%), Positives = 304/542 (56%), Gaps = 40/542 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++A++S Y  N +  EA+ LF +M+  GV ++ V ++  L  C     + +G   H +
Sbjct: 236 VSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGL 295

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFD-------------------------- 106
            VK G++   S+ N L+ +Y  CG +   R++FD                          
Sbjct: 296 AVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQD 355

Query: 107 ------QVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160
                  +PEK +++W+AMISGYAQ+   +  L L++EM+  GV PD    V  +S+C H
Sbjct: 356 AEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTH 415

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           L    +G  +   I  N    N  L+  LI+MY +CG ++ A  +F  M  K V +W A+
Sbjct: 416 LATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAV 475

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           I G  ++G  E ++ +F +M K+G  P+   F+ VL AC H GL + G  YF  M +++ 
Sbjct: 476 ILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHK 535

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           ++   +HY CMVDLLGRAG L EA ELI+SM + PD A WGALLGAC+ H++ E+ E   
Sbjct: 536 IEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLG 595

Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400
            K+I+L+P + G++VLLSNIY+   N   ++ +R +M +  + K PG S +E  G VH F
Sbjct: 596 RKLIQLQPDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEF 655

Query: 401 MVGDRNHHQTVEIYRMLD------KLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAI 454
           + GD+ H Q  +I  MLD      K+E  V     ++ S   + EE       HSEKLA+
Sbjct: 656 LAGDKTHPQINDIEHMLDVVAAKLKIEGYVP--TTSEVSLDIDEEEKETALFRHSEKLAV 713

Query: 455 AFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKD 514
           AFG+I  SP T I V KNLRIC DCH  +KL+SK  DR  +VRD  RFHHFK G CSC D
Sbjct: 714 AFGLITISPPTPIRVTKNLRICNDCHTVVKLISKAFDRDIVVRDRHRFHHFKHGACSCMD 773

Query: 515 YW 516
           +W
Sbjct: 774 FW 775



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 143/331 (43%), Gaps = 67/331 (20%)

Query: 80  LDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG--------------------------- 112
           LD    N L+  YV+ G V+   ++F+ +PE+                            
Sbjct: 169 LDLVSWNTLLAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGV 228

Query: 113 ------LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSV 166
                 +++W+AM+S Y QN +    L L+ EMK  GV  D V  V  LS+C+ +    +
Sbjct: 229 RGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEM 288

Query: 167 GLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD------------------- 207
           G  V       G      L NALI++Y+ CG +  AR IFD                   
Sbjct: 289 GRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYL 348

Query: 208 -------------GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
                         MP K VVSW+A+I GY  H     A+ LF EM   G+RPD TA VS
Sbjct: 349 RCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVS 408

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
            +SAC+H    D G ++ +   ++  LQ      T ++D+  + G +  ALE+  +M  E
Sbjct: 409 AISACTHLATLDLG-KWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAM-EE 466

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIK 345
              + W A++    ++ +VE +   F  + K
Sbjct: 467 KGVSTWNAVILGLAMNGSVEQSLNMFADMKK 497



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 133/315 (42%), Gaps = 47/315 (14%)

Query: 46  NSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLF 105
           +S T   LL  C      + G   H   V  G D D  V N LM +Y  CGSV   R++F
Sbjct: 104 DSYTYPILLQCCAARVSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVF 163

Query: 106 DQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHS 165
           ++ P   L++WN +++GY Q G       ++  M                          
Sbjct: 164 EESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGMPE------------------------ 199

Query: 166 VGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM--PRKTVVSWTAIIGG 223
                           N   +N++I ++ R G ++KAR IF+G+    + +VSW+A++  
Sbjct: 200 ---------------RNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSC 244

Query: 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP 283
           Y  +  GE A+ LF EM  SG+  D    VS LSACS     + G  + +G+  K G++ 
Sbjct: 245 YEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMG-RWVHGLAVKVGVED 303

Query: 284 GPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF--- 340
                  ++ L    G++ +A  + +      D   W +++       +++ AE+ F   
Sbjct: 304 YVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSM 363

Query: 341 --GKVIKLEPMNTGY 353
               V+    M +GY
Sbjct: 364 PEKDVVSWSAMISGY 378



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 114/256 (44%), Gaps = 21/256 (8%)

Query: 100 YGRKLFDQVPEKGLITWNAMISG--YAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
           Y  ++F+ +      TWN ++    Y QN     +L  Y+   +    PD+ T+  +L  
Sbjct: 56  YSLRIFNHLRNPNTFTWNTIMRAHLYLQNSPHQALLH-YKLFLASHAKPDSYTYPILLQC 114

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
           CA   +   G ++     ++GF  + ++ N L+N+YA CG++  AR +F+  P   +VSW
Sbjct: 115 CAARVSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSW 174

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
             ++ GY   G  E A ++F+ M +     +  A  S+++     G  +K    F G++ 
Sbjct: 175 NTLLAGYVQAGEVEEAERVFEGMPER----NTIASNSMIALFGRKGCVEKARRIFNGVR- 229

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGA-------VWGALLGACKIH 330
             G +     ++ MV    +     EAL L     VE  G+       V  + L AC   
Sbjct: 230 --GRERDMVSWSAMVSCYEQNEMGEEALVL----FVEMKGSGVAVDEVVVVSALSACSRV 283

Query: 331 KNVELAELAFGKVIKL 346
            NVE+     G  +K+
Sbjct: 284 LNVEMGRWVHGLAVKV 299


>gi|356540347|ref|XP_003538651.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 753

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/517 (37%), Positives = 296/517 (57%), Gaps = 21/517 (4%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V    L+ GY   +   +A+ LF KM  +GVE++      +L  C   G L+ G   H 
Sbjct: 246 AVACTGLMVGYTQAARNRDALLLFSKMISEGVELDGFVFSIILKACAALGDLYTGKQIHS 305

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
            C+K GL+ + SVG  L+  YVKC   +  R+ F+ + E    +W+A+I+GY Q+G    
Sbjct: 306 YCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIHEPNDFSWSALIAGYCQSGKFDR 365

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            LE+++ ++S GV  ++  +  +  +C+ +     G ++       G  +     +A+I 
Sbjct: 366 ALEVFKTIRSKGVLLNSFIYNNIFQACSAVSDLICGAQIHADAIKKGLVAYLSGESAMIT 425

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY++CG +  A   F  + +   V+WTAII  +  HG    A++LF EM  SG+RP+   
Sbjct: 426 MYSKCGKVDYAHQAFLAIDKPDTVAWTAIICAHAYHGKASEALRLFKEMQGSGVRPNVVT 485

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+ +L+ACSH+GL  +G ++   M +KYG+ P  +HY CM+D+  RAG L EALE+I SM
Sbjct: 486 FIGLLNACSHSGLVKEGKQFLDSMTDKYGVNPTIDHYNCMIDIYSRAGLLLEALEVIRSM 545

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
             EPD   W +LLG C   +N+E+  +A   + +L+P+++  YV++ N+Y+ A   D   
Sbjct: 546 PFEPDVMSWKSLLGGCWSRRNLEIGMIAADNIFRLDPLDSATYVIMFNLYALAGKWDEAA 605

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL--------ENL 423
           + R MM ER L+K+   S++ +KG+VH F+VGDR+H QT +IY  L +L        E L
Sbjct: 606 QFRKMMAERNLRKEVSCSWIIVKGKVHRFVVGDRHHPQTEQIYSKLKELNVSFKKGEERL 665

Query: 424 VQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDC 479
           + E     D T+R DQ      L D   HSE+LAIA+G+I T+  T I+V KN R C DC
Sbjct: 666 LNEENALCDFTERKDQ------LLD---HSERLAIAYGLICTAADTPIMVFKNTRSCKDC 716

Query: 480 HLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           H F K VS +  R+ +VRD  RFHH  SG CSC+DYW
Sbjct: 717 HEFAKRVSVVTGRELVVRDGNRFHHINSGECSCRDYW 753



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 150/336 (44%), Gaps = 17/336 (5%)

Query: 5   SIKSTHLTVCYNALISGYVLN-SLVSEAVSLFGKMRE----------QGVEINSVTMLCL 53
           S+KSTH +   +    G V N  L+S A    GK+R+           G+ IN  +   L
Sbjct: 29  SLKSTHSSFRTHQNQQGQVENLHLISLAKQ--GKLRQVHEFIRNMDIAGISINPRSYEYL 86

Query: 54  LPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL 113
             +C   G L  G   H    +      F + NC++ MY  C S     + FD++ ++ L
Sbjct: 87  FKMCGTLGALSDGKLFHNRLQRMANSNKF-IDNCILQMYCDCKSFTAAERFFDKIVDRDL 145

Query: 114 ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQ 173
            +W  +IS Y + G     + L+  M  LG+ P+   F  ++ S A      +G ++  Q
Sbjct: 146 SSWATIISAYTEEGRIDEAVGLFLRMLDLGIIPNFSIFSTLIMSFADPSMLDLGKQIHSQ 205

Query: 174 IQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVA 233
           +    F ++  +   + NMY +CG L  A    + M RK+ V+ T ++ GY        A
Sbjct: 206 LIRIEFAADISIETLISNMYVKCGWLDGAEVATNKMTRKSAVACTGLMVGYTQAARNRDA 265

Query: 234 VQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293
           + LF +M+  G+  DG  F  +L AC+  G    G +  +    K GL+      T +VD
Sbjct: 266 LLLFSKMISEGVELDGFVFSIILKACAALGDLYTGKQ-IHSYCIKLGLESEVSVGTPLVD 324

Query: 294 LLGRAGQLNEALELIESMLVEPDGAVWGALL-GACK 328
              +  +   A +  ES + EP+   W AL+ G C+
Sbjct: 325 FYVKCARFEAARQAFES-IHEPNDFSWSALIAGYCQ 359


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 191/447 (42%), Positives = 281/447 (62%), Gaps = 16/447 (3%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140
           D    N ++    K G +   RKLFDQ+PEK +I+W+ MI GY   G     L L+R ++
Sbjct: 125 DLPSWNAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQ 184

Query: 141 SL---GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG 197
           +L    + P+  T   VLS+CA LGA   G  V   I   G   +  L  +LI+MYA+CG
Sbjct: 185 TLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCG 244

Query: 198 NLKKARAIFDGM-PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL 256
           ++++A+ IFD + P K V++W+A+I  + +HG  E  ++LF  M+  G+RP+   FV+VL
Sbjct: 245 SIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVL 304

Query: 257 SACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPD 316
            AC H GL  +G EYF  M N+YG+ P  +HY CMVDL  RAG++ +A  +++SM +EPD
Sbjct: 305 CACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPD 364

Query: 317 GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMM 376
             +WGALL   +IH +VE  E+A  K+++L+P N+  YVLLSN+Y++      +  +R +
Sbjct: 365 VMIWGALLNGARIHGDVETCEIAITKLLELDPANSSAYVLLSNVYAKLGRWREVRHLRDL 424

Query: 377 MRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS--- 433
           M  R +KK PG S VE+ G +  F  GD +H + + +Y MLD++   +++H G +R+   
Sbjct: 425 MEVRGIKKLPGCSLVEVDGVIREFFAGDNSHPELLNLYVMLDEIMKRLEKH-GYERNTGE 483

Query: 434 -----DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
                D++  E  L+   +HSEKLAIA+  + TSPGT I ++KNLRIC DCH+ IK++SK
Sbjct: 484 VLLDLDEEGKEFALS---LHSEKLAIAYCFLRTSPGTTIRIVKNLRICSDCHVAIKIISK 540

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDY 515
             +R+ IVRD  RFHHFK+G CSCKDY
Sbjct: 541 EFNREIIVRDCNRFHHFKNGLCSCKDY 567



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 110/260 (42%), Gaps = 42/260 (16%)

Query: 109 PEKGLITWNAMISGYA----QNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAH 164
           P      WN +I        QN      L LY  M+   V PD  TF  +L S   +   
Sbjct: 20  PNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQS---INTP 76

Query: 165 SVGLEVEQQIQANGFGSNPFLNNALINMYARCGN-------------------------- 198
             G ++  QI   G  ++PF+  +LINMY+ CG                           
Sbjct: 77  HRGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHAN 136

Query: 199 -----LKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK---SGIRPDGT 250
                +  AR +FD MP K V+SW+ +I GY   G  + A+ LF  +     S +RP+  
Sbjct: 137 AKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEF 196

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
              SVLSAC+  G    G ++ +   +K G++      T ++D+  + G +  A  + ++
Sbjct: 197 TMSSVLSACARLGALQHG-KWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDN 255

Query: 311 MLVEPDGAVWGALLGACKIH 330
           +  E D   W A++ A  +H
Sbjct: 256 LGPEKDVMAWSAMITAFSMH 275



 Score = 42.4 bits (98), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 59/117 (50%), Gaps = 2/117 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLG-MCCHC 71
           + ++A+I+ + ++ L  E + LF +M   GV  N+VT + +L  CV  G +  G      
Sbjct: 263 MAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKR 322

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP-EKGLITWNAMISGYAQNG 127
           +  ++G+        C++ +Y + G ++    +   +P E  ++ W A+++G   +G
Sbjct: 323 MMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHG 379


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/549 (37%), Positives = 303/549 (55%), Gaps = 43/549 (7%)

Query: 11  LTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPIC----VDPGYLWLG 66
           + V +NA+ISGYV   L  EA   F +M   G++ +  T   L+  C       G    G
Sbjct: 247 IDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCG 306

Query: 67  MCCHCICVKFGLDLD----FSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISG 122
              H   ++  ++       SV N L+T Y K   +   R++FD++P + +I+WNA++SG
Sbjct: 307 RQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSG 366

Query: 123 Y-------------------------------AQNGLATHVLELYREMKSLGVCPDAVTF 151
           Y                               AQNG     L+L+ +MKS G+ P    F
Sbjct: 367 YVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAF 426

Query: 152 VGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR 211
            G +++C+ LG+   G ++  Q+   G  S     NALI MY+RCG ++ A ++F  MP 
Sbjct: 427 AGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPY 486

Query: 212 KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEY 271
              VSW A+I     HGHG  A++LF++M+K  I PD   F+++L+AC+HAGL  +G  Y
Sbjct: 487 VDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHY 546

Query: 272 FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHK 331
           F  M  +YG+ PG +HY  ++DLL RAG   +A  +I+SM  E    +W ALL  C+IH 
Sbjct: 547 FDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHG 606

Query: 332 NVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYV 391
           N+EL   A  ++++L P   G Y++LSN+Y+     D + RVR++MRER +KK+PG S+V
Sbjct: 607 NMELGIQAADRLLELIPGQDGTYIILSNMYAALGQWDEVARVRLLMRERGVKKEPGCSWV 666

Query: 392 ELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----HDGTKRSDQKNSEEHLNDTEV 447
           E++  VH+F+V D  H +   +Y  L +L N +++     D         SE   +    
Sbjct: 667 EVENMVHVFLVDDARHPEVQAVYTYLQQLVNEMKKLGYVPDTKFVLHDMESEHKEHSLST 726

Query: 448 HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKS 507
           HSEKLA+ +GI+    G  I V KNLRICGDCH   K +SK+V+R+ +VRD  RFHHFK+
Sbjct: 727 HSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYISKVVEREIVVRDRKRFHHFKN 786

Query: 508 GFCSCKDYW 516
           G CSC +YW
Sbjct: 787 GECSCGNYW 795



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 124/256 (48%), Gaps = 6/256 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +F E  +   LT  +  +ISG   N    E + LF +M+ +G+E         +  C   
Sbjct: 379 IFSEMPERNVLT--WTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVL 436

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  G   H   ++ G D   S GN L+TMY +CG V+    +F  +P    ++WNAMI
Sbjct: 437 GSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMI 496

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +  AQ+G     +EL+ +M    + PD +TF+ +L++C H G    G      +    +G
Sbjct: 497 AALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTM-CTRYG 555

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLF 237
             P  ++   LI++  R G   KA+++   MP +     W A++ G  IHG+ E+ +Q  
Sbjct: 556 ITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAA 615

Query: 238 DEMLKSGIRPDGTAFV 253
           D +L+     DGT  +
Sbjct: 616 DRLLELIPGQDGTYII 631



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 107/425 (25%), Positives = 174/425 (40%), Gaps = 92/425 (21%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVT---MLCLLPIC 57
           +F+ +  +   TV YNA+I+ Y   +    A++LF +M+  G   +  T   +L  L + 
Sbjct: 93  LFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVLSALSLI 152

Query: 58  VDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS---------VDYGRKLFDQV 108
            D       +  HC  +K G  L  SV N L++ YV C S         +   RK+FD+ 
Sbjct: 153 ADEERHCQML--HCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKVFDET 210

Query: 109 PEKGL---------------------------------ITWNAMISGYAQNGLATHVLEL 135
           P+  +                                 + WNAMISGY + GL     + 
Sbjct: 211 PKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDT 270

Query: 136 YREMKSLGVCPDAVTFVGVLSSCA----HLGAHSVGLEVEQQIQANGF-GSNPF---LNN 187
           +R M S+G+  D  T+  ++S+C      +G  + G +V   I       S+ F   +NN
Sbjct: 271 FRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNN 330

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGY----------------------- 224
           ALI  Y +   + +AR +FD MP + ++SW A++ GY                       
Sbjct: 331 ALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLT 390

Query: 225 --------GIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
                     +G GE  ++LF++M   G+ P   AF   ++ACS  G  D G +  +   
Sbjct: 391 WTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNG-QQIHSQV 449

Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH----KN 332
            + G   G      ++ +  R G +  A  +  +M    D   W A++ A   H    K 
Sbjct: 450 IRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPY-VDSVSWNAMIAALAQHGHGVKA 508

Query: 333 VELAE 337
           +EL E
Sbjct: 509 IELFE 513



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 103/230 (44%), Gaps = 19/230 (8%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPE--KGLITWNAMISGYAQNGLATHVLELYRE 138
           D      L++ Y   G+V   ++LF+  P   +  +++NAMI+ Y+        L L+ +
Sbjct: 70  DIVARTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQ 129

Query: 139 MKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ-QIQANGFGSNPFLNNALINMYARCG 197
           MK  G  PD  TF  VLS+ + +       ++   ++   G    P + NAL++ Y  C 
Sbjct: 130 MKRYGFLPDPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCA 189

Query: 198 N---------LKKARAIFDGMPRKTVV--SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           +         +  AR +FD  P+  +   SWT +I GY +     VA +   E+L     
Sbjct: 190 SSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGY-VRNDDLVAAR---ELLDGLTY 245

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           P   A+ +++S     GL ++  + F  M +  G+Q     YT ++   G
Sbjct: 246 PIDVAWNAMISGYVRRGLYEEAFDTFRRM-HSMGIQEDEYTYTSLISACG 294



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 3/131 (2%)

Query: 166 VGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYG 225
           +   V   I  +GF  N F+ N LIN+Y +  N+  AR +FD +P+  +V+ T ++  Y 
Sbjct: 23  IARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYS 82

Query: 226 IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
             G+ ++A QLF+    + IR D  ++ ++++A SH       L  F  MK +YG  P P
Sbjct: 83  SSGNVKLAQQLFNATPLT-IR-DTVSYNAMITAYSHGNDGHAALNLFVQMK-RYGFLPDP 139

Query: 286 EHYTCMVDLLG 296
             ++ ++  L 
Sbjct: 140 FTFSSVLSALS 150


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/521 (38%), Positives = 305/521 (58%), Gaps = 9/521 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +   L+  +N +I G V      EA  LF  M +   +  S   + ++      
Sbjct: 188 LFDEMPEKNILS--WNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGSRMFVTMIRASAGL 245

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G ++ G   H   +K G+  D  V   L+ MY KCGS++  + +FDQ+PEK  + WN++I
Sbjct: 246 GLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSII 305

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GYA +G +   L +Y EM+  GV  D  TF  ++  CA L +     +    +  +GFG
Sbjct: 306 AGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFG 365

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            +   N AL+++Y++ G ++ A+ +FD MP K V+SW A+I GYG HG G  AV++F+ M
Sbjct: 366 LDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERM 425

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           L  G+ P+   F++VLSACS++GL+D+G E F  M   + ++P   HY CM++LLGR G 
Sbjct: 426 LHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGL 485

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L+EA  LI+    +P   +W ALL AC++HKN EL + A  K+  + P     YV+L NI
Sbjct: 486 LDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNI 545

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+ +  L+    V   ++ R L+  P  S++E+K + + F+ GD+ H Q+ EIY+ LD+L
Sbjct: 546 YNXSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQKLDEL 605

Query: 421 ENLVQEHDGTKR-----SDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRI 475
              + +H    +      D    EE +     HSEKLAIAFG+INTS  T + ++++ RI
Sbjct: 606 MLEISKHGYVPQXKFLLPDVDEQEERV--LLYHSEKLAIAFGLINTSDWTPLQIVQSHRI 663

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           CGDCH  IKL++ +  R+ +VRDA+RFHHFK G CSC DYW
Sbjct: 664 CGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 191/400 (47%), Gaps = 16/400 (4%)

Query: 30  EAVSLFGKMREQGV-EINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCL 88
           EA+ LF  +   G  +++S T   L+  C+    +          +  GLD D  + N +
Sbjct: 113 EALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRV 172

Query: 89  MTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDA 148
           + M+VKCG +   R+LFD++PEK +++WN +I G    G       L+  M        +
Sbjct: 173 LLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGS 232

Query: 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208
             FV ++ + A LG    G ++       G G + F+  ALI+MY++CG+++ A+ +FD 
Sbjct: 233 RMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQ 292

Query: 209 MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
           MP KT V W +II GY +HG+ E A+ ++ EM  SG++ D   F  ++  C+     +  
Sbjct: 293 MPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHA 352

Query: 269 LEYFYGM-KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
            +   G+ ++ +GL       T +VDL  + G++ +A  + + M+   +   W AL+   
Sbjct: 353 KQAHAGLVRHGFGLDIVAN--TALVDLYSKWGRIEDAKHVFD-MMPHKNVISWNALIAGY 409

Query: 328 KIH-KNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKK 384
             H + VE  E+ F +++   + P +  +  +LS       +  G      M R+ ++K 
Sbjct: 410 GNHGRGVEAVEM-FERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKP 468

Query: 385 DPGY--SYVELKGRVHLF-----MVGDRNHHQTVEIYRML 417
              +    +EL GR  L      ++ D     TV ++  L
Sbjct: 469 RAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAAL 508


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/487 (40%), Positives = 290/487 (59%), Gaps = 4/487 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +ISG   N +  +A+ +  +M    +  +S T+  +LPI  +   L  G   H  
Sbjct: 162 VSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGY 221

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ G D D  +G+ L+ MY KC  VD   ++F  +P+   I+WN++I+G  QNG+    
Sbjct: 222 AIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEG 281

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+ +++M    + P+ V+F  ++ +CAHL    +G ++   I  + F  N F+ +AL++M
Sbjct: 282 LKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDM 341

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CGN++ AR IFD M    +VSWTA+I GY +HGH   A+ LF  M   G++P+  AF
Sbjct: 342 YAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAF 401

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           ++VL+ACSHAGL D+  +YF  M   Y + PG EHY  + DLLGR G+L EA E I  M 
Sbjct: 402 MAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMH 461

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           +EP G+VW  LL AC++HKN+ELAE    K+  ++P N G YVLLSNIYS A       +
Sbjct: 462 IEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARK 521

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYR----MLDKLENLVQEHD 428
           +R+ MR++ +KK P  S++E+K +VH F+ GD++H     I      +L+++E      D
Sbjct: 522 LRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLD 581

Query: 429 GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
            T+       E+       HSE+LAI FGII+T  GT I V KNLR+C DCH   K +SK
Sbjct: 582 TTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISK 641

Query: 489 IVDRQFI 495
           IV R+ +
Sbjct: 642 IVGREIV 648



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 132/257 (51%), Gaps = 3/257 (1%)

Query: 102 RKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL 161
           RK+F+ +P++ +++WN +ISG AQNG+    L + REM +  + PD+ T   VL   A  
Sbjct: 150 RKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEY 209

Query: 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
                G E+      NG+ ++ F+ ++LI+MYA+C  +  +  +F  +P+   +SW +II
Sbjct: 210 VNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSII 269

Query: 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281
            G   +G  +  ++ F +ML + I+P+  +F S++ AC+H      G +  +G   +   
Sbjct: 270 AGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQ-LHGYIIRSRF 328

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG 341
                  + +VD+  + G +  A  + + M +  D   W A++    +H +   A ++  
Sbjct: 329 DGNVFIASALVDMYAKCGNIRTARWIFDKMELY-DMVSWTAMIMGYALHGHAYDA-ISLF 386

Query: 342 KVIKLEPMNTGYYVLLS 358
           K +++E +   Y   ++
Sbjct: 387 KRMEVEGVKPNYVAFMA 403



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 139/281 (49%), Gaps = 10/281 (3%)

Query: 10  HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCC 69
           H  + +N++I+G V N +  E +  F +M    ++ N V+   ++P C     L LG   
Sbjct: 260 HDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQL 319

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   ++   D +  + + L+ MY KCG++   R +FD++    +++W AMI GYA +G A
Sbjct: 320 HGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHA 379

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN-- 187
              + L++ M+  GV P+ V F+ VL++C+H G      +    +  + +   P L +  
Sbjct: 380 YDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQD-YRIIPGLEHYA 438

Query: 188 ALINMYARCGNLKKARAIFDGM---PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
           A+ ++  R G L++A      M   P  +V  W+ ++    +H + E+A ++  ++    
Sbjct: 439 AVADLLGRVGRLEEAYEFISDMHIEPTGSV--WSTLLAACRVHKNIELAEKVSKKLFTVD 496

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
            +  G A+V + +  S AG      +    M++K G++  P
Sbjct: 497 PQNIG-AYVLLSNIYSAAGRWKDARKLRIAMRDK-GMKKKP 535



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 114/273 (41%), Gaps = 34/273 (12%)

Query: 63  LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYG-------RKLFDQVPEKGLIT 115
           L  G   H   ++ G+  D    N LM MY K  S++ G        K+   +PE   I 
Sbjct: 26  LRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEGGVQRFCDSKMLGGIPEPREI- 84

Query: 116 WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175
                 G   N   +H L    + +  G+  +     G L+  +++      +   +++ 
Sbjct: 85  ------GKCSN---SHDLPCELDERVAGIDQN-----GDLNQMSNILYQ---VNTYKKVF 127

Query: 176 ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQ 235
             G  S+ +      + Y     L   R +F+ MP++ +VSW  +I G   +G  E A+ 
Sbjct: 128 DEGKTSDVYSKKEKESYY-----LGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALM 182

Query: 236 LFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDL 294
           +  EM  + +RPD     SVL   +      KG E + Y ++N Y         + ++D+
Sbjct: 183 MVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIG--SSLIDM 240

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
             +  +++++  +   ML + DG  W +++  C
Sbjct: 241 YAKCTRVDDSCRVF-YMLPQHDGISWNSIIAGC 272


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/529 (36%), Positives = 301/529 (56%), Gaps = 29/529 (5%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +NA++ GY    +  EA+ LF +M  E GV  +  T+  +LP C            H   
Sbjct: 343 WNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYV 402

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           +K G+  +  V N LM +Y + G ++  R +F  +  + +++WN +I+G    G      
Sbjct: 403 LKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAF 462

Query: 134 ELYREMKSLG------------------VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175
           +L REM+  G                  V P+ VT + +L  CA L A + G E+     
Sbjct: 463 QLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAM 522

Query: 176 ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQ 235
            +   S+  + +AL++MYA+CG L  +RA+FD +P++ V++W  +I  YG+HG G+ A+ 
Sbjct: 523 RHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIA 582

Query: 236 LFDEMLKSG-IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
           LFD M+ S   +P+   F++ L+ACSH+G+ D+G+E F+ MK  +G+QP P+ + C VD+
Sbjct: 583 LFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDLHACAVDI 642

Query: 295 LGRAGQLNEALELIESMLV-EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGY 353
           LGRAG+L+EA  +I SM   E   + W + LGAC++H+NV L E+A  ++ +LEP    +
Sbjct: 643 LGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPLGEIAAERLFQLEPDEASH 702

Query: 354 YVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEI 413
           YVLL NIYS A   +    VR  MR+R + K+PG S++EL G +H FM G+  H ++  +
Sbjct: 703 YVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIELDGVIHRFMAGESAHPESTLV 762

Query: 414 YRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTE------VHSEKLAIAFGIINTSPGTEI 467
           +  +D L   ++    T   D  +    + ++E       HSEKLAIAFG++ T PG  I
Sbjct: 763 HAHMDALWERMRNQGYTP--DTSSVLHDIEESEKAAILRYHSEKLAIAFGLLRTPPGATI 820

Query: 468 VVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            V KNLR+C DCH   K +S++V R+ ++RD  RFHHF  G CSC DYW
Sbjct: 821 RVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFVDGACSCGDYW 869



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 162/334 (48%), Gaps = 14/334 (4%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGY-LWLGMCCH 70
            V +N+LI+   L      A+     M  +G  ++S T++ +L  C      L LG   H
Sbjct: 127 AVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAEDLRLGREAH 186

Query: 71  CICVKFG-LDLDFSVG-NCLMTMYVKCGSVDYGRKLFDQV-----PEKGLITWNAMISGY 123
              +K G LD D     N L++MY + G VD  + LF  V     P  G++TWN M+S  
Sbjct: 187 AFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLL 246

Query: 124 AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI-QANGFGSN 182
            Q+G     +E+  +M + GV PD +TF   L +C+ L   S+G E+   + + +   +N
Sbjct: 247 VQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAAN 306

Query: 183 PFLNNALINMYARCGNLKKARAIFDGMP--RKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            F+ +AL++MYA    +  AR +FD +P   + +  W A++ GY   G  E A++LF  M
Sbjct: 307 SFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARM 366

Query: 241 -LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
             ++G+ P  T    VL AC+ +  T  G E  +G   K G+   P     ++DL  R G
Sbjct: 367 EAEAGVVPSETTIAGVLPACARSE-TFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLG 425

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNV 333
            + EA   I + +   D   W  L+  C +  ++
Sbjct: 426 DM-EAARWIFAAIEPRDVVSWNTLITGCVVQGHI 458



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 149/300 (49%), Gaps = 34/300 (11%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQG------------------VEINSVTMLCLL 54
           V +N LI+G V+   + +A  L  +M++QG                  V  N+VT++ LL
Sbjct: 443 VSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLL 502

Query: 55  PICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLI 114
           P C        G   H   ++  LD D +VG+ L+ MY KCG +   R +FD++P++ +I
Sbjct: 503 PGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVI 562

Query: 115 TWNAMISGYAQNGLATHVLELY-REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQ 173
           TWN +I  Y  +GL    + L+ R + S    P+ VTF+  L++C+H G    G+E+   
Sbjct: 563 TWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHS 622

Query: 174 IQAN-GFGSNPFLNNALINMYARCGNLKKARAIFDGMP--RKTVVSWTAIIGGYGIHGH- 229
           ++ N G    P L+   +++  R G L +A +I   M    + V +W++ +G   +H + 
Sbjct: 623 MKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNV 682

Query: 230 --GEVAVQ-LFDEMLKSGIRPD-GTAFVSVLSACSHAGLTDKGLEYFYGMKNK-YGLQPG 284
             GE+A + LF       + PD  + +V + +  S AGL +K  E    M+ +    +PG
Sbjct: 683 PLGEIAAERLFQ------LEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPG 736



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 128/308 (41%), Gaps = 45/308 (14%)

Query: 83  SVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL 142
           +V N L+T Y +CG +     LF+ +P +  +T+N++I+           L+  R+M   
Sbjct: 97  AVANALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLE 156

Query: 143 GVCPDAVTFVGVLSSCAHLGAH-SVGLEVEQQIQANGF--GSNPFLNNALINMYARCGNL 199
           G    + T V VL +C+HL     +G E       NGF  G   F  NAL++MYAR G +
Sbjct: 157 GHPLSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLV 216

Query: 200 KKARAIFDGM-----PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
             A+ +F  +     P   VV+W  ++      G    A+++  +M+  G+RPDG  F S
Sbjct: 217 DDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFAS 276

Query: 255 VLSACSHAGLTDKGLE-YFYGMKNK----------------------------YGLQPGP 285
            L ACS   +   G E + Y +K+                             + + PG 
Sbjct: 277 ALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGG 336

Query: 286 EH----YTCMVDLLGRAGQLNEALELIESMLVE----PDGAVWGALLGACKIHKNVELAE 337
                 +  MV    +AG   EALEL   M  E    P       +L AC   +     E
Sbjct: 337 HRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKE 396

Query: 338 LAFGKVIK 345
              G V+K
Sbjct: 397 AVHGYVLK 404



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 84/217 (38%), Gaps = 41/217 (18%)

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
           G  P + NAL+  YARCG+L  A A+F+ MP +  V++ ++I    +      A+    +
Sbjct: 93  GFTPAVANALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRD 152

Query: 240 MLKSGIRPDGTAFVSVLSACSH-------------------------------------- 261
           ML  G        VSVL ACSH                                      
Sbjct: 153 MLLEGHPLSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYAR 212

Query: 262 AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML---VEPDGA 318
            GL D     F  +        G   +  MV LL ++G+  EA+E+I  M+   V PDG 
Sbjct: 213 LGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGI 272

Query: 319 VWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV 355
            + + L AC   + + L       V+K   +    +V
Sbjct: 273 TFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFV 309


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/522 (40%), Positives = 305/522 (58%), Gaps = 7/522 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVD 59
           VFDE     ++ + +N LI  Y  +     A+ L+  M   G ++ ++ T   +L  C  
Sbjct: 125 VFDEMPNQGNVFL-WNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAA 183

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              L  G   H   ++     D  V   L+ MY KCG +D    +F+    +    WN+M
Sbjct: 184 LLDLSAGREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSM 243

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I+   QNG     L L R M + G+ P   T V  +S+ A   A   G E+       GF
Sbjct: 244 IAACGQNGRPAEALTLCRNMAAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGF 303

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
           GS   L  +L++MYA+ G +  A  +F+ +  + ++SW A+I G+G+HGH + A +LF  
Sbjct: 304 GSQDKLKTSLLDMYAKSGWVMVAHVLFEQLLHRELISWNAMICGFGMHGHADHAFELFSR 363

Query: 240 ML-KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
           M  ++ + PD   FV VLSAC+H G+  +  E F  M   Y ++P  +HYTC+VD+LG +
Sbjct: 364 MRSEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVLGHS 423

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           G+  EA ++I+ MLV+PD  +WGALL  CKIHKNVELAELA  K+I+LEP + G YVLLS
Sbjct: 424 GRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALQKLIELEPEDAGNYVLLS 483

Query: 359 NIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD 418
           NIY+E+   +   RVR +M  R LKK    S++ELKG+ H F+VGD +H ++ +IY  L+
Sbjct: 484 NIYAESGKWEEAARVRKLMTNRGLKKIIACSWIELKGKFHGFLVGDASHPRSDDIYEELE 543

Query: 419 KLENLVQE----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLR 474
           +LE L+ +     D T        +E  N    HSE+LAIAFG+I+T P T+++V KNLR
Sbjct: 544 RLEGLISQTGYVPDTTPVFHNVEDDEKRNMVWGHSERLAIAFGLISTPPRTKLLVTKNLR 603

Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +C DCH+ IKL+S+I  R+ I+RD  R+HHF +G CSCKD+W
Sbjct: 604 VCEDCHVVIKLISQIEQREIIIRDVNRYHHFVNGECSCKDHW 645



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 149/303 (49%), Gaps = 13/303 (4%)

Query: 46  NSVTML--CLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRK 103
           N  T+L  C+L   V PG        H   +  G  LD  +   L+ +Y  CG V   R+
Sbjct: 70  NYATILRSCVLSRAVRPGRQ-----LHARLLVSGTGLDAVLATRLVDLYASCGHVSLARR 124

Query: 104 LFDQVPEKG-LITWNAMISGYAQNGLATHVLELYREMKSLG-VCPDAVTFVGVLSSCAHL 161
           +FD++P +G +  WN +I  YA++G     +ELYR M + G + PD  T+  VL +CA L
Sbjct: 125 VFDEMPNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAAL 184

Query: 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
              S G EV  ++    + ++ F+   LI+MYA+CG + +A A+F+    +    W ++I
Sbjct: 185 LDLSAGREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMI 244

Query: 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYG 280
              G +G    A+ L   M   GI P     VS +SA + A    +G E + YG +  +G
Sbjct: 245 AACGQNGRPAEALTLCRNMAAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFG 304

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
            Q   +  T ++D+  ++G +  A  L E +L   +   W A++    +H + + A   F
Sbjct: 305 SQDKLK--TSLLDMYAKSGWVMVAHVLFEQLL-HRELISWNAMICGFGMHGHADHAFELF 361

Query: 341 GKV 343
            ++
Sbjct: 362 SRM 364



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 13/194 (6%)

Query: 142 LGVCPDAVT---FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGN 198
           L  CP       +  +L SC    A   G ++  ++  +G G +  L   L+++YA CG+
Sbjct: 59  LSPCPSPYNHSNYATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGH 118

Query: 199 LKKARAIFDGMPRK-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG-IRPDGTAFVSVL 256
           +  AR +FD MP +  V  W  +I  Y   G  E A++L+  ML  G ++PD   +  VL
Sbjct: 119 VSLARRVFDEMPNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVL 178

Query: 257 SACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTC--MVDLLGRAGQLNEALELIESMLV 313
            AC+       G E +   M+  +      + + C  ++D+  + G ++EA  +     +
Sbjct: 179 KACAALLDLSAGREVHDRVMRTNWAT----DVFVCTGLIDMYAKCGCMDEAWAVFNDTTI 234

Query: 314 EPDGAVWGALLGAC 327
             D AVW +++ AC
Sbjct: 235 R-DAAVWNSMIAAC 247


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/557 (36%), Positives = 303/557 (54%), Gaps = 43/557 (7%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE   S    V +N +I  Y    L+ EA  LF +M++  V  + + +  ++  C   
Sbjct: 171 VFDE--MSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRT 228

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYV--------------------------- 93
           G +      +   ++  + +D  +   L+TMY                            
Sbjct: 229 GNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMV 288

Query: 94  ----KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
               K G +D  R +FDQ   K L+ W  MIS YA++      L ++ EM   G+ PD V
Sbjct: 289 SGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVV 348

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
           T + V+S+C +LG       V +    NG  S   ++NALINMYA+CG L  AR +F+ M
Sbjct: 349 TMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKM 408

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
           P + VVSW+++I  + +HG    ++ LF +M +  + P+   FV VL  CSH+GL ++G 
Sbjct: 409 PTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGK 468

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
           + F  M ++Y + P  EHY CMVDL GRA  L EALE+IESM + P+  +WG+L+ AC++
Sbjct: 469 KIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRV 528

Query: 330 HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYS 389
           H  +EL ELA  +++KLEP + G  VL+SNIY+     D +  +R +M ++++ K+ G S
Sbjct: 529 HGELELGELAAKRILKLEPDHDGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLS 588

Query: 390 YVELKGRVHLFMVGDRNHHQTVEIYRML----DKLENLVQEHDGTKRSDQKNSEEHLNDT 445
            ++L G+ H F++GD+ H Q+ EIY  L     KL+      DG         EE  +  
Sbjct: 589 RIDLNGKSHEFLIGDKRHKQSNEIYTKLYEVVSKLKLAGYVPDGGSVLVDVEEEEKKDLV 648

Query: 446 EVHSEKLAIAFGIINTSPGTE------IVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDA 499
             HSEKLA+ FG++N     E      I ++KNLR+C DCH F KLVSK+ + + IVRD 
Sbjct: 649 LWHSEKLALCFGLMNKEKEEEKGSCGVIRIVKNLRVCEDCHAFFKLVSKVYELEIIVRDR 708

Query: 500 TRFHHFKSGFCSCKDYW 516
           TRFH +K G CSC+DYW
Sbjct: 709 TRFHRYKDGLCSCRDYW 725



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 161/357 (45%), Gaps = 33/357 (9%)

Query: 5   SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLW 64
           SI     ++ +N+L+     +      +  + ++R  G   + ++   +L        L+
Sbjct: 72  SISPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALF 131

Query: 65  LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYA 124
            GM  H    K     D  V   LM MY  CG ++Y R +FD++ ++ ++TWN MI  Y 
Sbjct: 132 EGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYC 191

Query: 125 QNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVG-----LEVEQQIQAN-- 177
           + GL     +L+ EMK   V PD +    ++S+C   G            +E  ++ +  
Sbjct: 192 RFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTH 251

Query: 178 ----------GFG--------------SNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
                     G G               N F++ A+++ Y++ G L  AR IFD    K 
Sbjct: 252 LLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKD 311

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
           +V WT +I  Y    H + A+++F+EM  SGI+PD    +SV+SAC + G  DK  ++ +
Sbjct: 312 LVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKA-KWVH 370

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
              +  GL+        ++++  + G L+ A ++ E M    +   W +++ A  +H
Sbjct: 371 RYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTR-NVVSWSSMINAFAMH 426


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/440 (41%), Positives = 280/440 (63%), Gaps = 10/440 (2%)

Query: 84  VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG 143
           VGN L++MY + G ++  RK FD + EK L+++NA++ GYA+N  +     L+ E+   G
Sbjct: 61  VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTG 120

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
           +   A TF  +LS  A +GA   G ++  ++   G+ SN  + NALI+MY+RCGN++ A 
Sbjct: 121 IGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAF 180

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG 263
            +F+ M  + V+SWT++I G+  HG    A+++F +ML++G +P+   +V+VLSACSH G
Sbjct: 181 QVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVG 240

Query: 264 LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGAL 323
           +  +G ++F  M  ++G+ P  EHY CMVDLLGR+G L EA+E I SM +  D  VW  L
Sbjct: 241 MISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTL 300

Query: 324 LGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLK 383
           LGAC++H N EL   A   +++ EP +   Y+LLSN+++ A     ++++R  M+ER L 
Sbjct: 301 LGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLI 360

Query: 384 KDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD-------QK 436
           K+ G S++E++ RVH F VG+ +H Q  +IY+ LD+L + ++E      +D       ++
Sbjct: 361 KEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEE 420

Query: 437 NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIV 496
             E+ L     HSEK+A+AFG+I+TS    I + KNLR+CGDCH  IK +S    R+ +V
Sbjct: 421 QKEQFLFQ---HSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVV 477

Query: 497 RDATRFHHFKSGFCSCKDYW 516
           RD+ RFHH K+G CSC DYW
Sbjct: 478 RDSNRFHHIKNGVCSCNDYW 497



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 130/247 (52%), Gaps = 4/247 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V YNA++ GY  N    EA  LF ++ + G+ I++ T   LL      G +  G   H  
Sbjct: 91  VSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGR 150

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G   +  + N L++MY +CG+++   ++F+++ ++ +I+W +MI+G+A++G AT  
Sbjct: 151 LLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRA 210

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLE-VEQQIQANGFGSNPFLNNALIN 191
           LE++ +M   G  P+ +T+V VLS+C+H+G  S G +      + +G          +++
Sbjct: 211 LEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVD 270

Query: 192 MYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +  R G L +A    + MP     + W  ++G   +HG+ E+     + +L+    PD  
Sbjct: 271 LLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQ--EPDDP 328

Query: 251 AFVSVLS 257
           A   +LS
Sbjct: 329 AAYILLS 335


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/506 (41%), Positives = 294/506 (58%), Gaps = 52/506 (10%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +NA+ISG+    L   A+ +F ++   Q  + ++ TM  +LP                
Sbjct: 189 VSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILP---------------- 232

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                      S+G        +   +   + +FD++  KGLI+WNAM++ Y  N +   
Sbjct: 233 -----------SMGK------ARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVE 275

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            +EL+  M+  G+ PDAVT   VL SC  + A S+G  + + I+     S+  L NAL++
Sbjct: 276 AVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMD 335

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA CG LK+AR +FD M  + VVSWT+II  YG HGHG  A+ LF++M   G+ PD  A
Sbjct: 336 MYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIA 395

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           FV++L+ACSHAGL D G  YFY M +++ + P  EHY CMVDLLGRAG + EA + I  M
Sbjct: 396 FVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVM 455

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            ++P+  VWGALLGAC+IH N+++  LA   +++L P  TGYYVLLSNIY+ A     + 
Sbjct: 456 PIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVS 515

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----- 426
            VR +M  + +KK PG S  EL  RVH F +GD +H Q+  IY+ L +L   ++E     
Sbjct: 516 MVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQSKMIYKKLSELLRRIREMGYNP 575

Query: 427 ------HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCH 480
                 HD     ++++ E HL+   VHSEKLAIAF +INT+PGT I +  NLR C DCH
Sbjct: 576 EVEATLHD----VEEEDKEGHLS---VHSEKLAIAFLLINTNPGTPIRITMNLRTCSDCH 628

Query: 481 LFIKLVSKIVDRQFIVRDATRFHHFK 506
              KL+S I  R+ I++D  R H+ K
Sbjct: 629 HAAKLISTIAGREIILKDVNRIHYMK 654



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 149/363 (41%), Gaps = 71/363 (19%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEI--NSVTMLCLLPICV 58
           V D S   T  TV +N L+ G    SL  +A+ LF  MR QG     +  T    L  C 
Sbjct: 76  VLDASPDRT--TVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCA 133

Query: 59  DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
               L LG   H    + GLD +  V +  ++MY +CG  D   ++F+++  + +++WNA
Sbjct: 134 ATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNA 193

Query: 119 MISGYAQNGLATHVLELYREMKSLGVC-PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
           MISG+A  GL    ++++RE+ +L    PDA T   +L S                    
Sbjct: 194 MISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGK----------------- 236

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
                           AR  ++   + +FD M  K ++SW A++  Y  +     AV+LF
Sbjct: 237 ----------------ARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELF 280

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK---------------YG-- 280
             M K GI PD     +VL +C        G      +K +               Y   
Sbjct: 281 MRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANC 340

Query: 281 --LQPGPE-----------HYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALL 324
             L+   +            +T ++   GR G   EA++L E M    +EPD   + A+L
Sbjct: 341 GCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAIL 400

Query: 325 GAC 327
            AC
Sbjct: 401 AAC 403



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 110/249 (44%), Gaps = 18/249 (7%)

Query: 104 LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG-VC-PDAVTFVGVLSSCAHL 161
           + D  P++  + +N ++ G     L    L L+  M+  G  C PD  T+   L SCA  
Sbjct: 76  VLDASPDRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAAT 135

Query: 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
               +G ++       G   N F+ ++ I+MYARCG    A  +F+ M  + VVSW A+I
Sbjct: 136 DGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMI 195

Query: 222 GGYGIHGHGEVAVQLFDEMLK-SGIRPDGTAFVSVLSACSHAGLTDKGL--EYFYGMKNK 278
            G+   G    A+ +F E++     +PD     S+L +   A + D  L    F  M+ K
Sbjct: 196 SGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFK 255

Query: 279 YGLQPGPEHYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGACKIHKNVEL 335
                G   +  M+ +        EA+EL   M    +EPD      +L +C      E+
Sbjct: 256 -----GLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCG-----EV 305

Query: 336 AELAFGKVI 344
           + L+ GK I
Sbjct: 306 SALSLGKRI 314


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/509 (37%), Positives = 298/509 (58%), Gaps = 4/509 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           ++ + A+I+G+  N L  EA+ LF +MR + +E++  T   +L  C     L  G   H 
Sbjct: 239 SISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHA 298

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             ++     +  VG+ L+ MY KC S+     +F ++  K +++W AM+ GY QNG +  
Sbjct: 299 YIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEE 358

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            ++++ +M++ G+ PD  T   V+SSCA+L +   G +   +   +G  S   ++NAL+ 
Sbjct: 359 AVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVT 418

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +Y +CG+++ +  +F  M     VSWTA++ GY   G     ++LF+ ML  G +PD   
Sbjct: 419 LYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVT 478

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+ VLSACS AGL  KG + F  M  ++ + P  +HYTCM+DL  RAG+L EA + I  M
Sbjct: 479 FIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKM 538

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
              PD   W +LL +C+ H+N+E+ + A   ++KLEP NT  Y+LLS+IY+     + + 
Sbjct: 539 PFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVA 598

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLE-NLVQE---H 427
            +R  MR++ L+K+PG S+++ K +VH+F   D+++  + +IY  L+KL   +VQE    
Sbjct: 599 NLRKGMRDKGLRKEPGCSWIKYKNQVHIFSADDQSNPFSDQIYSELEKLNYKMVQEGYVP 658

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           D        +  E +     HSEKLAIAFG+I   PG  I V+KNLR+CGDCH   K +S
Sbjct: 659 DMNSVLHDVDDSEKIKMLNHHSEKLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKYIS 718

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KI  R+ +VRDA RFH FK G CSC D+W
Sbjct: 719 KITQREILVRDAARFHLFKDGRCSCGDFW 747



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 124/428 (28%), Positives = 198/428 (46%), Gaps = 69/428 (16%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGM 67
           T   V +N+LIS Y     + ++V  +  M   G   +N + +  +L +    G + LG+
Sbjct: 103 TRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGL 162

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL-------------- 113
             H   VKFG      VG+ L+ MY K G V   R+ FD++PEK +              
Sbjct: 163 QVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCS 222

Query: 114 -----------------ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS 156
                            I+W AMI+G+ QNGL    ++L+REM+   +  D  TF  VL+
Sbjct: 223 RIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLT 282

Query: 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS 216
           +C  + A   G +V   I    +  N F+ +AL++MY +C ++K A  +F  M  K VVS
Sbjct: 283 ACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVS 342

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEY----- 271
           WTA++ GYG +G+ E AV++F +M  +GI PD     SV+S+C++    ++G ++     
Sbjct: 343 WTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRAL 402

Query: 272 ------FYGMKNK----YGLQPGPE---------------HYTCMVDLLGRAGQLNEALE 306
                 F  + N     YG     E                +T +V    + G+ NE L 
Sbjct: 403 VSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLR 462

Query: 307 LIESMLV---EPDGAVWGALLGACKIHKNVELAELAFGKVIK---LEPMNTGYYVLLSNI 360
           L ESML    +PD   +  +L AC     V+     F  +IK   + P+   +Y  + ++
Sbjct: 463 LFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIE-DHYTCMIDL 521

Query: 361 YSEARNLD 368
           +S A  L+
Sbjct: 522 FSRAGRLE 529



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 107/258 (41%), Gaps = 73/258 (28%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL---------------- 113
           HC  +K   + +  + N L++ Y K   + Y R++FDQ+P++ L                
Sbjct: 32  HCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKLACL 91

Query: 114 ---------------ITWNAMISGYAQNGLATHVLELYREM---KSLGVCPDAVTFVGVL 155
                          ++WN++IS YA  G     ++ Y  M       +   A++ + +L
Sbjct: 92  PEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLIL 151

Query: 156 SS---CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK 212
           +S   C HL     GL+V   +   GF S  F+ + L++MY++ G +  AR  FD MP K
Sbjct: 152 ASKQGCVHL-----GLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEK 206

Query: 213 TVV-------------------------------SWTAIIGGYGIHGHGEVAVQLFDEML 241
            VV                               SWTA+I G+  +G    A+ LF EM 
Sbjct: 207 NVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMR 266

Query: 242 KSGIRPDGTAFVSVLSAC 259
              +  D   F SVL+AC
Sbjct: 267 LENLEMDQYTFGSVLTAC 284


>gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530
 gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana]
 gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/526 (39%), Positives = 305/526 (57%), Gaps = 12/526 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVD 59
           VF + +  T L+ C N +I  + L+    E   LF  +R    +  N ++    L  C+ 
Sbjct: 68  VFSQRLNPT-LSHC-NTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIK 125

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
            G L  G+  H      G   D  +   LM +Y  C +     K+FD++P++  ++WN +
Sbjct: 126 SGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVL 185

Query: 120 ISGYAQNGLATHVLELYREMKSL---GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
            S Y +N     VL L+ +MK+     V PD VT +  L +CA+LGA   G +V   I  
Sbjct: 186 FSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDE 245

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
           NG      L+N L++MY+RCG++ KA  +F GM  + VVSWTA+I G  ++G G+ A++ 
Sbjct: 246 NGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEA 305

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN-KYGLQPGPEHYTCMVDLL 295
           F+EMLK GI P+      +LSACSH+GL  +G+ +F  M++ ++ ++P   HY C+VDLL
Sbjct: 306 FNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLL 365

Query: 296 GRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV 355
           GRA  L++A  LI+SM ++PD  +W  LLGAC++H +VEL E     +I+L+    G YV
Sbjct: 366 GRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYV 425

Query: 356 LLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYR 415
           LL N YS     + +  +R +M+E+R+   PG S +EL+G VH F+V D +H +  EIY+
Sbjct: 426 LLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYK 485

Query: 416 MLDKLENLVQ-----EHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVM 470
           ML ++   ++         ++  + ++ EE       HSEKLAIAFGI+ T PGT I V 
Sbjct: 486 MLAEINQQLKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVT 545

Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KNLR C DCH F K VS + DR  IVRD +RFHHFK G CSC D+W
Sbjct: 546 KNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/542 (38%), Positives = 302/542 (55%), Gaps = 41/542 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NALISG+  +     +   F  M        +VT + +L  C     L LGM  H  
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKR 186

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCG-------------------------------SVDYG 101
            ++ G+  D  V N L+ MY +CG                                VD  
Sbjct: 187 VLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRA 246

Query: 102 RKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL 161
           R LFD +PE+  I W AMI GY Q G     LE +R M+   V  D  T V V+++CA L
Sbjct: 247 RDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQL 306

Query: 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
           GA   G      +   G   + F+ NALI+MY++CG++++A  +F  M  +   +WTAII
Sbjct: 307 GALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAII 366

Query: 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281
            G  ++G GE A+ +F  ML++   PD   FV VL+AC+HAGL DKG E+F  M   Y +
Sbjct: 367 LGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNI 426

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG 341
            P   HY C++D+LGRAG+L EAL+ I+ M ++P+  +WG LL +C+++ N E+ ELA  
Sbjct: 427 SPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAE 486

Query: 342 KVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFM 401
           ++++L+P N+  Y+LLSN+Y+++     + R+R ++ E+ +KK+PG S +E+ G +H F+
Sbjct: 487 RLLELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEFV 546

Query: 402 VGDRNHHQTVEIYRMLDKLENLVQE-------HDGTKRSDQKNSEEHLNDTEVHSEKLAI 454
             DR+H    EIY    KLEN++ +        D T+   +   EE       HSEKLA+
Sbjct: 547 AADRSHPMNKEIY---SKLENVLTDLRNAGYVPDVTEVLVEVTEEEKQKVLYWHSEKLAV 603

Query: 455 AFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKD 514
            F ++ +     I ++KNLR+C DCH  IKL+SK+  R+ IVRD TRFHHF+ G CSCKD
Sbjct: 604 TFALLTSESNVIIRIVKNLRMCLDCHNAIKLISKLYGREVIVRDRTRFHHFRHGSCSCKD 663

Query: 515 YW 516
           YW
Sbjct: 664 YW 665



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 115/248 (46%), Gaps = 4/248 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T+ + A+I GYV      +A+  F  M+   V  +  TM+ ++  C   G L  G     
Sbjct: 258 TIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARI 317

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              + G+ +D  VGN L+ MY KCGS++    +F  +  +   TW A+I G A NG    
Sbjct: 318 YMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEE 377

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLE-VEQQIQANGFGSNPFLNNALI 190
            ++++  M      PD VTFVGVL++C H G    G E      +A            LI
Sbjct: 378 AIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLI 437

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++  R G LK+A    D MP K   + W  ++    ++G+ E+     + +L+  + PD 
Sbjct: 438 DVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLE--LDPDN 495

Query: 250 TAFVSVLS 257
           +    +LS
Sbjct: 496 STAYILLS 503



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 137/311 (44%), Gaps = 37/311 (11%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFD----QVPEKGLITWNAMISGYAQ 125
           H   VKFG++ +    + L+ MY   G     R + +           + WNA+ISG+ +
Sbjct: 79  HAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHNR 138

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
           +G        + +M        AVT+V VLS+C       +G++V +++  +G   +  +
Sbjct: 139 SGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQRV 198

Query: 186 NNALINMYARCGNL-------------------------------KKARAIFDGMPRKTV 214
            NAL++MYA CG++                                +AR +FD MP +  
Sbjct: 199 ENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDT 258

Query: 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYG 274
           ++WTA+I GY   G    A++ F  M    +R D    VSV++AC+  G  + G E+   
Sbjct: 259 IAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETG-EWARI 317

Query: 275 MKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVE 334
              + G++        ++D+  + G +  AL++ + M    D   W A++    ++   E
Sbjct: 318 YMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMH-NRDKFTWTAIILGLAVNGRGE 376

Query: 335 LAELAFGKVIK 345
            A   F ++++
Sbjct: 377 EAIDMFYRMLR 387



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 96/233 (41%), Gaps = 32/233 (13%)

Query: 97  SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS 156
           ++   R L D +P +     ++ +SG+     A   +  Y  M + G  PDA TF  +L 
Sbjct: 4   ALSRARSLLDGIPHRRGRAASSSVSGHG----AEEAVAGYVRMLAGGARPDAYTFPSLLK 59

Query: 157 SCAHLGAHSVGLE-----VEQQIQANGFGSNPFLNNALINMYARCGNLKKAR-------- 203
           + A     +V        +   +   G  SN    ++LI MYA  G+   AR        
Sbjct: 60  AAAAARGAAVAAASVGGAIHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACL 119

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG 263
           A   G P    V W A+I G+   G  E++   F +M+++        +VSVLSAC    
Sbjct: 120 ATGGGAP----VMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACG--- 172

Query: 264 LTDKGLEYFYGMKN-----KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
              KG +   GM+      + G+ P       +VD+    G ++ A  L E M
Sbjct: 173 ---KGKDLLLGMQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGM 222


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/526 (39%), Positives = 310/526 (58%), Gaps = 12/526 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD++ K T     +NAL     L     E + L+ +M   GV  +  T   +L  CV  
Sbjct: 135 VFDKTRKRT--IYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVAS 192

Query: 61  ----GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
                 L  G   H   ++ G +    +   L+ MY + G V    ++FDQ+P K +++W
Sbjct: 193 EAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSW 252

Query: 117 NAMISGYAQNGLATHVLELYREM--KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
           +AMI+ Y++NG     LEL+R+M  ++  + P++VT V VL +CA L A   G  +   I
Sbjct: 253 SAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYI 312

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
              G  S   + +AL+ +YARCGNL+    +F+ M ++ VVSW ++I  YGIHG G  A+
Sbjct: 313 LRRGLDSILPVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNSLISSYGIHGFGRKAI 372

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
           Q+F EM+  G+ P   +FVSVL ACSHAGL ++G   F  M   + + P  EHY CMVDL
Sbjct: 373 QIFKEMIDQGLSPSPISFVSVLGACSHAGLVEEGKVLFESMVRGHKIFPSVEHYACMVDL 432

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           LGRA +L+EA ++I+ M +EP   VWG+LLG+C+IH NVELAE A  ++ +LEP N G Y
Sbjct: 433 LGRANRLDEAAKIIDDMRIEPGPKVWGSLLGSCRIHCNVELAERATSRLFELEPTNAGNY 492

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
           VLL++IY+EA+  + + RV+M++  R L+K PG S +E++ +++ FM  D  + Q  +++
Sbjct: 493 VLLADIYAEAKMWNEVKRVKMLLEARGLQKVPGRSCIEIRRKIYSFMSVDEFNPQIEQLH 552

Query: 415 RMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVM 470
            +L KL   ++E      +       + EE       HSEKLA+AFG+IN+  G  I + 
Sbjct: 553 ALLLKLSMEMKEKGYVPDTKVVLYDLDPEEKERIVLGHSEKLALAFGLINSKKGETIRIT 612

Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KNLR+C DCH   K +SK  +R+ +VRD  RFH F+ G CSC DYW
Sbjct: 613 KNLRLCEDCHSVTKFISKFANREILVRDVNRFHLFQDGVCSCGDYW 658



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 133/280 (47%), Gaps = 8/280 (2%)

Query: 57  CVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
           C     L  G+  H   +  G D D  +   L+ MY +  S+D  RK+FD+  ++ +  W
Sbjct: 88  CTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVW 147

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC----AHLGAHSVGLEVEQ 172
           NA+       G    VL+LYR M  +GV  D  T+  VL +C    A +     G E+  
Sbjct: 148 NALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHG 207

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
            I  +GF  +  +   L++MYAR G +  A  +FD MP K VVSW+A+I  Y  +G    
Sbjct: 208 HILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLE 267

Query: 233 AVQLFDEML--KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC 290
           A++LF +M+     + P+    VSVL AC+     ++G +  +G   + GL       + 
Sbjct: 268 ALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQG-KLMHGYILRRGLDSILPVVSA 326

Query: 291 MVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           +V +  R G L     + E M  + D   W +L+ +  IH
Sbjct: 327 LVTVYARCGNLELGHRVFERM-EKRDVVSWNSLISSYGIH 365



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 104/235 (44%), Gaps = 11/235 (4%)

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
           N +I    + G     L++  +  +    P   T+  ++ SC    +   G+++ + +  
Sbjct: 51  NPLIQSLCKQGNLNQALQVLSQEPN----PTQHTYELLILSCTRQNSLPQGIDLHRHLIH 106

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
           +G   +PFL   LINMY+   ++  AR +FD   ++T+  W A+     + G+G   + L
Sbjct: 107 DGSDQDPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDL 166

Query: 237 FDEMLKSGIRPDGTAFVSVLSAC----SHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
           +  M + G+  D   +  VL AC    +   L   G E  +G   ++G +      T ++
Sbjct: 167 YRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGRE-IHGHILRHGFEGHVHIMTTLL 225

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE 347
           D+  R G +  A  + + M V+ +   W A++ AC       L  L   + + LE
Sbjct: 226 DMYARFGCVLNASRVFDQMPVK-NVVSWSAMI-ACYSKNGKPLEALELFRKMMLE 278


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/511 (36%), Positives = 299/511 (58%), Gaps = 8/511 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           ++ +  +++G+  N L SEA+ +F +MR QG+ I+  T   +L  C     L  G   H 
Sbjct: 237 SITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHA 296

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             ++   D +  VG+ L+ MY KC S+     +F ++  K +I+W A+I GY QNG +  
Sbjct: 297 YIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEE 356

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            + ++ EM+  G+ PD  T   V+SSCA+L +   G +       +G      ++NAL+ 
Sbjct: 357 AVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVT 416

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +Y +CG+++ A  +FD M     VSWTA++ GY   G  +  + LF++ML  G++PDG  
Sbjct: 417 LYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVT 476

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+ VLSACS AG  +KG  YF+ M+  +G+ P  +HYTCM+DL  R+G+L EA E I+ M
Sbjct: 477 FIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQM 536

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            + PD   WG LL AC++  ++E+ + A   +++++P N   YVLL ++++     + + 
Sbjct: 537 PMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVA 596

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
           ++R  MR+R++KK+PG S+++ K +VH+F   D++H  +  IY  L+ L + + E +G K
Sbjct: 597 QLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPCSKGIYEKLEWLNSKMLE-EGYK 655

Query: 432 RSDQKNSEEHLNDTEV------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
             D  +    + DT+       HSEKLAIAFG+I       I ++KNLR+C DCH   K 
Sbjct: 656 -PDVSSVLHDVADTDKVHMVSHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKF 714

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +SKI  R  +VRDA RFH F  G CSC D+W
Sbjct: 715 ISKITGRDILVRDAVRFHKFSDGVCSCGDFW 745



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/374 (28%), Positives = 180/374 (48%), Gaps = 47/374 (12%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKM--REQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
           V YNA+I+G+      ++AV ++  +   +  V  + +TM  ++      G   LG   H
Sbjct: 104 VSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFH 163

Query: 71  CICVKFGLDLDFSVGNCLMTMYVK-------------------------------CGSVD 99
           C  ++ G   +  VG+ L+ MY K                               C  V+
Sbjct: 164 CQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVE 223

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
             R+LF+ + ++  ITW  M++G+ QNGL +  LE++R M+  G+  D  TF  +L++C 
Sbjct: 224 EARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACG 283

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
            L A   G ++   I    +  N F+ +AL++MY++C ++K A  +F  M  K ++SWTA
Sbjct: 284 ALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTA 343

Query: 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279
           +I GYG +G  E AV++F EM + GI PD     SV+S+C++    ++G ++     +  
Sbjct: 344 LIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQF-----HCL 398

Query: 280 GLQPGPEHY----TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC----KIHK 331
            L  G  HY      +V L G+ G + +A  L + M    D   W AL+       +  +
Sbjct: 399 ALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFH-DQVSWTALVSGYAQFGRAKE 457

Query: 332 NVELAELAFGKVIK 345
            ++L E    K +K
Sbjct: 458 TIDLFEKMLAKGVK 471



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 107/259 (41%), Gaps = 65/259 (25%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+T Y K G     R++FD +P   L T+NA++S  A   L + +  L+  M    + 
Sbjct: 45  NHLLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQRDIV 104

Query: 146 ---------------------------------PDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
                                            P  +T   ++ + + LG  ++G +   
Sbjct: 105 SYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHC 164

Query: 173 QIQANGFGSNPFLNNALINMYA-------------------------------RCGNLKK 201
           QI   GFG+N F+ + L++MYA                               RC  +++
Sbjct: 165 QILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEE 224

Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261
           AR +F+ M  +  ++WT ++ G+  +G    A+++F  M   GI  D   F S+L+AC  
Sbjct: 225 ARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGA 284

Query: 262 AGLTDKGLE-YFYGMKNKY 279
               ++G + + Y ++ +Y
Sbjct: 285 LSALEQGKQIHAYIIRTRY 303



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 4/124 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE   S H  V + AL+SGY       E + LF KM  +GV+ + VT + +L  C   
Sbjct: 430 LFDE--MSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRA 487

Query: 61  GYLWLGMC-CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP-EKGLITWNA 118
           G++  G    H +    G+        C++ +Y + G +    +   Q+P     I W  
Sbjct: 488 GFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGT 547

Query: 119 MISG 122
           ++S 
Sbjct: 548 LLSA 551


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/523 (39%), Positives = 300/523 (57%), Gaps = 19/523 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  K     V + A+ISGY  N  V  A  LF  M ++  E++   ML         
Sbjct: 196 LFDEMPKRN--VVSWTAMISGYAQNGKVILARKLFEVMPDRN-EVSWTAMLV-------- 244

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNC--LMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
           GY+  G       + F    D  V  C  +M  + + G VD  + +F+++  +   TW+A
Sbjct: 245 GYIQAGHVEDAEDL-FNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSA 303

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           MI  Y QN      L  +REM   G+ P+  +F+ +L+ CA L     G E+   +    
Sbjct: 304 MIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLRCS 363

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
           F ++ F  +ALI MY +CGNL KA+ +F+    K VV W ++I GY  HG GE A+ +FD
Sbjct: 364 FDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFD 423

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
           ++  + + PDG  ++ VL+ACS+ G   +G E F  M     ++ G  HY+CMVDLLGRA
Sbjct: 424 DLRLARMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAHYSCMVDLLGRA 483

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           G ++EAL+LI +M VEPD  +WGAL+GAC++HKN E+AE+A  K+++LEP + G YVLLS
Sbjct: 484 GLVDEALDLINNMPVEPDAIIWGALMGACRMHKNAEIAEVAAKKLLELEPGSAGPYVLLS 543

Query: 359 NIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGD-RNHHQTVEIYRML 417
           +IY+     +    +R  +  R L K PG S++E    VHLF  GD  +H +   I  ML
Sbjct: 544 HIYTSTGRWEDASDMRKFISSRNLNKSPGCSWIEYNKMVHLFTSGDVLSHPEHAIILNML 603

Query: 418 DKLENLVQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
           ++L+ L+ E     DG+      + E+       HSE+ A+A+G++    G  I VMKNL
Sbjct: 604 EELDGLLMESGYSADGSFVLHDVDEEQKAQSLRYHSERQAVAYGLLKVPAGMPIRVMKNL 663

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           R+CGDCH  IKL++KI  R+ I+RDA RFHHFK G CSC+DYW
Sbjct: 664 RVCGDCHSAIKLITKITSREIILRDANRFHHFKDGLCSCRDYW 706



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 168/363 (46%), Gaps = 34/363 (9%)

Query: 5   SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLW 64
           SI      V + +L+ GYV + L+++A+ LF +M E+    N VT   LL      G+L 
Sbjct: 105 SIPLPPSVVSFTSLLRGYVRHGLLADAIRLFHQMPER----NHVTYTVLLG-----GFLD 155

Query: 65  LGMCCHCICVKFGL-DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGY 123
            G       +   + D D      +++ Y + G +   R LFD++P++ +++W AMISGY
Sbjct: 156 AGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGY 215

Query: 124 AQNGLATHVLELYREMKSLGVCPD--AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGS 181
           AQNG      +L+       V PD   V++  +L     +G    G   + +   N    
Sbjct: 216 AQNGKVILARKLFE------VMPDRNEVSWTAML-----VGYIQAGHVEDAEDLFNAMPD 264

Query: 182 NPFLN-NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           +P    NA++  + + G +  A+A+F+ M  +   +W+A+I  Y  +     A+  F EM
Sbjct: 265 HPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREM 324

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           L  GIRP+ T+F+S+L+ C+     D G E    M  +          + ++ +  + G 
Sbjct: 325 LCRGIRPNYTSFISILTVCAALATADYGRELHAAML-RCSFDTDVFAVSALITMYIKCGN 383

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG-----KVIKLEPMNTGYYV 355
           L++A  +  +M    D  +W +++     H    L E A G     ++ ++ P    Y  
Sbjct: 384 LDKAKRVF-NMFEPKDVVMWNSMITGYAQHG---LGEEALGIFDDLRLARMAPDGITYIG 439

Query: 356 LLS 358
           +L+
Sbjct: 440 VLT 442



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 118/303 (38%), Gaps = 78/303 (25%)

Query: 84  VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK--- 140
             N  +   V+ G+++  R  FD +P +   ++NA+I+GY +N L    L L+  M    
Sbjct: 19  AANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPSRD 78

Query: 141 --------------------------SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
                                     S+ + P  V+F  +L      G  +  + +  Q+
Sbjct: 79  LGSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFHQM 138

Query: 175 QANG-----------------------FGSNP----FLNNALINMYARCGNLKKARAIFD 207
                                      F   P        A+++ Y + G + +ARA+FD
Sbjct: 139 PERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARALFD 198

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT--AFVSVLSACSHAGLT 265
            MP++ VVSWTA+I GY  +G   +A +LF+ M      PD    ++ ++L     AG  
Sbjct: 199 EMPKRNVVSWTAMISGYAQNGKVILARKLFEVM------PDRNEVSWTAMLVGYIQAGHV 252

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLL----GRAGQLNEALELIESMLVEPDGAVWG 321
           +   + F  M         P+H     + +    G+ G ++ A  + E M    DG  W 
Sbjct: 253 EDAEDLFNAM---------PDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDG-TWS 302

Query: 322 ALL 324
           A++
Sbjct: 303 AMI 305



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 79/200 (39%), Gaps = 38/200 (19%)

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM------ 240
           NA I    R GN++ ARA FD MP +T  S+ A+I GY  +   + A+ LF  M      
Sbjct: 21  NARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPSRDLG 80

Query: 241 ----------LKSGIRPDGTA-------------FVSVLSACSHAGLTDKGLEYFYGMKN 277
                     L+    PD  A             F S+L      GL    +  F+ M  
Sbjct: 81  SYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFHQMPE 140

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVE--- 334
           +  +      YT ++     AG++NEA +L + M  +   A    L G C+  +  E   
Sbjct: 141 RNHVT-----YTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARA 195

Query: 335 -LAELAFGKVIKLEPMNTGY 353
              E+    V+    M +GY
Sbjct: 196 LFDEMPKRNVVSWTAMISGY 215


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/506 (39%), Positives = 297/506 (58%), Gaps = 5/506 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +  +ISG V N L  +A+  +  M   G   + VT+  +L  C   G L +GM  H 
Sbjct: 302 VVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHE 361

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           +  + G  L   V N L+ MY KC  ++   ++F Q+P+K +I+W ++I+G   N     
Sbjct: 362 LAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFE 421

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L  +R+M  L   P++VT +  LS+CA +GA   G E+       G G + FL NA+++
Sbjct: 422 ALIFFRKM-ILKSKPNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPNAILD 480

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +Y RCG ++ A   F+ +  K V +W  ++ GY   G G + ++LF  M++S I PD   
Sbjct: 481 LYVRCGRMRTALNQFN-LNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDDVT 539

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+S+L ACS +G+  +GLEYF  MK  Y + P  +HY C+VDLLGRAG+LNEA E IE M
Sbjct: 540 FISLLCACSRSGMVTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERM 599

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            ++PD A+WGALL AC+IH++V L ELA   + K +  + GYY+LL N+Y+++   D + 
Sbjct: 600 PIKPDPAIWGALLNACRIHRHVLLGELAAQHIFKQDAESIGYYILLCNLYADSGKWDEVA 659

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH--DG 429
           +VR  M+E  L  DPG S+VE+KG+VH F+ GD  H Q  EI  +L+     ++    +G
Sbjct: 660 KVRRTMKEEGLIVDPGCSWVEVKGKVHAFLSGDNFHPQMQEINVVLEGFYEKMKTSGFNG 719

Query: 430 TKRSDQKNSEEHLNDTEV-HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
            + S     +    D    HSE+ AIA+ +IN++PG  I V KNL +C  CH  +K +SK
Sbjct: 720 QECSSMDGIQTSKADIFCGHSERQAIAYSLINSAPGMPIWVTKNLYMCQSCHSTVKFISK 779

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKD 514
           IV R+  VRD  +FHHFK G CSC D
Sbjct: 780 IVRREISVRDTEQFHHFKDGLCSCGD 805



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 111/353 (31%), Positives = 178/353 (50%), Gaps = 8/353 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N L+ GY       EA+ L+ ++   G+  +  T   +L  C     L  G   H   V
Sbjct: 103 WNVLVGGYTKAGFFDEALCLYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVV 162

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           +F  D+D  V N L+TMYVKCG V   R LFD++P +  I+WNAMISGY +N      LE
Sbjct: 163 RFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLE 222

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+  M+ L + PD +T   V+S+C  LG   +G ++   +    +  N  + N+LI MY 
Sbjct: 223 LFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYL 282

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
             G+ K+A ++F GM  + VVSWT II G   +   + A++ +  M  +G  PD     S
Sbjct: 283 SVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIAS 342

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VLSAC+  G  D G++  + +  + G          ++D+  +  ++ +ALE+   +   
Sbjct: 343 VLSACASLGQLDMGMK-LHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQI--- 398

Query: 315 PDGAV--WGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR 365
           PD  V  W +++   +I+     A + F K+I     N+    L+S + + AR
Sbjct: 399 PDKDVISWTSVINGLRINNRCFEALIFFRKMILKSKPNS--VTLISALSACAR 449



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 112/353 (31%), Positives = 175/353 (49%), Gaps = 10/353 (2%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           T   + +NA+ISGY  N    E + LF +MRE  ++ + +TM  ++  C   G   LG  
Sbjct: 198 TRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQ 257

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            H   V+   D + SV N L+ MY+  G       +F  +  + +++W  +ISG   N L
Sbjct: 258 LHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLL 317

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
               LE Y+ M+  G  PD VT   VLS+CA LG   +G+++ +  +  G      + N+
Sbjct: 318 PDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANS 377

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM-LKSGIRP 247
           LI+MY++C  ++KA  IF  +P K V+SWT++I G  I+     A+  F +M LKS  +P
Sbjct: 378 LIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILKS--KP 435

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           +    +S LSAC+  G    G E  +    K G+         ++DL  R G++  AL  
Sbjct: 436 NSVTLISALSACARVGALMCGKE-IHAHALKAGMGFDGFLPNAILDLYVRCGRMRTALNQ 494

Query: 308 IESMLVEPDGAVWGALL-GACKIHKNVELAELAFGKVIKLE--PMNTGYYVLL 357
               L E D   W  LL G  +  K   + EL F ++++ E  P +  +  LL
Sbjct: 495 FN--LNEKDVGAWNILLTGYAQKGKGAMVMEL-FKRMVESEINPDDVTFISLL 544



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 142/319 (44%), Gaps = 15/319 (4%)

Query: 16  NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP------GYLWLGMCC 69
           N+ +    L+  + +A+     M+E  + +     + L+ +C +        Y+W  +  
Sbjct: 2   NSRLLQLCLSGNLEQALKHLASMQEVKIPVEEDCFVALIRLCENKRGYSEGEYVWKAVLS 61

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
             + +     L   +GN L++M+V+ G V     +F ++ E+ L +WN ++ GY + G  
Sbjct: 62  SLVTL-----LSVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFF 116

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              L LY  +   G+ PD  TF  VL SCA       G EV   +    F  +  + NAL
Sbjct: 117 DEALCLYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNAL 176

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           I MY +CG++  AR +FD MP +  +SW A+I GY  +      ++LF  M +  I PD 
Sbjct: 177 ITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDL 236

Query: 250 TAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
               SV+SAC   G    G + + Y ++  Y        Y  ++ +    G   EA  + 
Sbjct: 237 MTMTSVISACELLGDERLGTQLHSYVVRTAY--DGNISVYNSLIQMYLSVGHWKEAESVF 294

Query: 309 ESMLVEPDGAVWGALLGAC 327
             M    D   W  ++  C
Sbjct: 295 SGMECR-DVVSWTTIISGC 312


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 214/559 (38%), Positives = 305/559 (54%), Gaps = 47/559 (8%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+  K     V +N +I  YV N    EA+ L+ K+  +G +    T + +L  C   
Sbjct: 264 VFDKMKKRD--MVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSV 321

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVD--------------------- 99
             L  G   H   ++ GLD + +V   L+ MY KCGS++                     
Sbjct: 322 KALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLI 381

Query: 100 -------YG------RKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK-SLGVC 145
                  YG      RK+FD++  +  I WNAMI+ Y QNG A   ++++REM  + G+ 
Sbjct: 382 GAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLK 441

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           PDAVTF+ VL +CA LG  S    +  QI  +   SN  + N LINMYARCG+L++A  +
Sbjct: 442 PDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERL 501

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           F     KTVVSWTA++  +  +G    A+ LF EM   G++PD   + S+L  C+H G  
Sbjct: 502 FAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSL 561

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           ++G  YF  M   +GL P  +H+  MVDLLGR+G+L +A EL+ESM  EPD   W   L 
Sbjct: 562 EQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLT 621

Query: 326 ACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKD 385
           AC+IH  +EL E A  +V +L+P +T  Y+ +SNIY+     + +  VR  M ER LKK 
Sbjct: 622 ACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKL 681

Query: 386 PGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDT 445
           PG S++E+ G++H F  G + H +T EI   L +L  L++        D K     +++ 
Sbjct: 682 PGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMRA--AGYVPDTKAVLHDVSEG 739

Query: 446 E------VHSEKLAIAFGIINTS-PGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRD 498
           E       HSEK+AIAFG++++   G  I V+KNLR+C DCH   K +++I  R  I+RD
Sbjct: 740 EKETMLLYHSEKMAIAFGLVSSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIILRD 799

Query: 499 ATRFHHFKS-GFCSCKDYW 516
             RFH F S G CSC DYW
Sbjct: 800 CNRFHRFSSDGKCSCGDYW 818



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 165/314 (52%), Gaps = 6/314 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+I+ Y  N   +EA+ L+ +M  QG+  + VT + +L  C     L  G   H  
Sbjct: 76  VSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGAC---SSLAQGREIHNR 132

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               GLD   S+ N L+TMY + GSV   +++F  +  +   +WNA+I  ++Q+G  +  
Sbjct: 133 VFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGA 192

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L +++EMK   + P++ T++ V+S  +       G ++  +I ANGF S+  +  ALINM
Sbjct: 193 LRIFKEMK-CDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINM 251

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CG+  +AR +FD M ++ +VSW  +IG Y  +G    A++L+ ++   G +     F
Sbjct: 252 YGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATF 311

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           VS+L ACS      +G    +    + GL       T +V++  + G L EA ++  +M 
Sbjct: 312 VSILGACSSVKALAQG-RLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAM- 369

Query: 313 VEPDGAVWGALLGA 326
              D   W  L+GA
Sbjct: 370 KNRDAVAWSTLIGA 383



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 175/387 (45%), Gaps = 69/387 (17%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           T     +NA+I  +  +   S A+ +F +M+   ++ NS T + ++     P  L  G  
Sbjct: 170 TRDETSWNAVILAHSQSGDWSGALRIFKEMKCD-MKPNSTTYINVISGFSTPEVLPEGRK 228

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            H   V  G D D  V   L+ MY KCGS    R++FD++ ++ +++WN MI  Y QNG 
Sbjct: 229 IHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGD 288

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
               LELY+++   G      TFV +L +C+ + A + G  V   I   G  S   +  A
Sbjct: 289 FHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATA 348

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGE----------------- 231
           L+NMYA+CG+L++AR +F+ M  +  V+W+ +IG Y  +G+G+                 
Sbjct: 349 LVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDT 408

Query: 232 -----------------VAVQLFDEML-KSGIRPDGTAFVSVLSACS-----------HA 262
                             A+++F EM   +G++PD   F++VL AC+           HA
Sbjct: 409 ICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHA 468

Query: 263 GLTDKGLE-------YFYGMKNKYGLQPGPEH------------YTCMVDLLGRAGQLNE 303
            +++  LE           M  + G     E             +T MV    + G+  E
Sbjct: 469 QISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAE 528

Query: 304 ALELIESMLVE---PDGAVWGALLGAC 327
           AL+L + M +E   PD   + ++L  C
Sbjct: 529 ALDLFQEMDLEGVKPDDVTYTSILFVC 555



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 149/284 (52%), Gaps = 12/284 (4%)

Query: 46  NSVTMLCLLPICVDPGYLWLGMCCH--CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRK 103
           ++VT L +L  C   G +  G   H    C +F  + D  VGN L++MY KC S+   R 
Sbjct: 6   DNVTFLTVLCSCSSCGDVAEGRALHERIRCSRF--ERDTMVGNALISMYGKCDSLVDARS 63

Query: 104 LFDQVP--EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL 161
           +F+ +   ++ +++WNAMI+ YAQNG +T  L LY  M   G+  D VTFV VL +C+ L
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
                G E+  ++  +G  S   L NAL+ MYAR G++  A+ +F  +  +   SW A+I
Sbjct: 124 AQ---GREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVI 180

Query: 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281
             +   G    A+++F EM K  ++P+ T +++V+S  S   +  +G +  +      G 
Sbjct: 181 LAHSQSGDWSGALRIFKEM-KCDMKPNSTTYINVISGFSTPEVLPEGRK-IHAEIVANGF 238

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
                  T ++++ G+ G  +EA E+ + M  + D   W  ++G
Sbjct: 239 DSDLVVATALINMYGKCGSSHEAREVFDKM-KKRDMVSWNVMIG 281



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 111/233 (47%), Gaps = 42/233 (18%)

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           PD VTF+ VL SC+  G  + G  + ++I+ + F  +  + NALI+MY +C +L  AR++
Sbjct: 5   PDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64

Query: 206 FDGMP--RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS--- 260
           F+ M   ++ VVSW A+I  Y  +GH   A+ L+  M   G+  D   FVSVL ACS   
Sbjct: 65  FESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLA 124

Query: 261 -----HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEP 315
                H  +   GL+ F  + N             +V +  R G + +A  + +S+    
Sbjct: 125 QGREIHNRVFYSGLDSFQSLAN------------ALVTMYARFGSVGDAKRMFQSLQTR- 171

Query: 316 DGAVWGALL----------GACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           D   W A++          GA +I K ++           ++P +T Y  ++S
Sbjct: 172 DETSWNAVILAHSQSGDWSGALRIFKEMK---------CDMKPNSTTYINVIS 215


>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
 gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
 gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 721

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/520 (39%), Positives = 310/520 (59%), Gaps = 20/520 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++I  Y  +   ++A++L+ +M  +G +I+  T+  +L       +L  G   H  
Sbjct: 206 VSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGK 265

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVD---YGRKLFDQVPEKGLITWNAMISGYAQNG-L 128
            +K G   +  VG+ L+  Y KCG  D      K+F ++    L+ WN MISGY+ N  L
Sbjct: 266 LIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEEL 325

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSV-----GLEVEQQIQANGFGSNP 183
           +   ++ +R+M+ +G  PD  +FV V S+C++L + S      GL ++  I +N      
Sbjct: 326 SEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRIS--- 382

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
            +NNALI++Y + GNL+ AR +FD MP    VS+  +I GY  HGHG  A+ L+  ML S
Sbjct: 383 -VNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDS 441

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
           GI P+   FV+VLSAC+H G  D+G EYF  MK  + ++P  EHY+CM+DLLGRAG+L E
Sbjct: 442 GIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEE 501

Query: 304 ALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE 363
           A   I++M  +P    W ALLGAC+ HKN+ LAE A  +++ ++P+    YV+L+N+Y++
Sbjct: 502 AERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYAD 561

Query: 364 ARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD----- 418
           AR  + +  VR  MR +R++K PG S++E+K + H+F+  D +H    E+   L+     
Sbjct: 562 ARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKK 621

Query: 419 --KLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
             K+  ++ +     + D+    +       HSEKLA+AFG+++T  G E+VV+KNLRIC
Sbjct: 622 MKKVGYVMDKKWAMVKEDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDGEELVVVKNLRIC 681

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           GDCH  IK +S +  R+ IVRD  RFH FK G CSC DYW
Sbjct: 682 GDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 113/399 (28%), Positives = 174/399 (43%), Gaps = 46/399 (11%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +    TV YN LISGY        A+ LF +MR+ G E++  T+  L+  C D 
Sbjct: 96  LFDEIPQPD--TVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDR 153

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE-KGLITWNAM 119
             L   +  HC  V  G D   SV N  +T Y K G +     +F  + E +  ++WN+M
Sbjct: 154 VDLIKQL--HCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSM 211

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I  Y Q+      L LY+EM   G   D  T   VL++   L     G +   ++   GF
Sbjct: 212 IVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGF 271

Query: 180 GSNPFLNNALINMYARCG---NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGH-GEVAVQ 235
             N  + + LI+ Y++CG    +  +  +F  +    +V W  +I GY ++    E AV+
Sbjct: 272 HQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEAVK 331

Query: 236 LFDEMLKSGIRPDGTAFVSVLSACSHA----------GLTDKG-------------LEYF 272
            F +M + G RPD  +FV V SACS+           GL  K              +  +
Sbjct: 332 SFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLY 391

Query: 273 YGMKN----KYGLQPGPE----HYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWG 321
           Y   N    ++     PE     + CM+    + G   EAL L + ML   + P+   + 
Sbjct: 392 YKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFV 451

Query: 322 ALLGACKIHKNVELAELAFG---KVIKLEPMNTGYYVLL 357
           A+L AC     V+  +  F    +  K+EP    Y  ++
Sbjct: 452 AVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMI 490



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 127/261 (48%), Gaps = 16/261 (6%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N ++  Y K   +   R+LFD++P+   +++N +ISGYA        + L++ M+ LG  
Sbjct: 78  NVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFE 137

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ----ANGFGSNPFLNNALINMYARCGNLKK 201
            D  T  G++++C         +++ +Q+     + GF S   +NNA +  Y++ G L++
Sbjct: 138 VDGFTLSGLIAACCDR------VDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLRE 191

Query: 202 ARAIFDGMPR-KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
           A ++F GM   +  VSW ++I  YG H  G  A+ L+ EM+  G + D     SVL+A +
Sbjct: 192 AVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALT 251

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL--ELIESMLVEPDGA 318
                  G + F+G   K G        + ++D   + G  +     E +   ++ PD  
Sbjct: 252 SLDHLIGGRQ-FHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLV 310

Query: 319 VWGALLGACKIHKNVELAELA 339
           VW  ++    +  N EL+E A
Sbjct: 311 VWNTMISGYSM--NEELSEEA 329



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 71/185 (38%), Gaps = 18/185 (9%)

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
           FV + S C  L          ++        N F  N ++  YA+   +  AR +FD +P
Sbjct: 49  FVNLYSKCGRLSYARAAFYSTEE-------PNVFSYNVIVKAYAKDSKIHIARQLFDEIP 101

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270
           +   VS+  +I GY        A+ LF  M K G   DG     +++AC       K L 
Sbjct: 102 QPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDRVDLIKQLH 161

Query: 271 YFYGMKNKYGLQPGPEHYT----CMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
            F        +  G + Y+      V    + G L EA+ +   M    D   W +++ A
Sbjct: 162 CF-------SVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVA 214

Query: 327 CKIHK 331
              HK
Sbjct: 215 YGQHK 219



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 4/98 (4%)

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            S+ +L+N  +N+Y++CG L  ARA F       V S+  I+  Y       +A QLFDE
Sbjct: 40  ASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDE 99

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
           +     +PD  ++ +++S  + A  T   +  F  M+ 
Sbjct: 100 I----PQPDTVSYNTLISGYADARETFAAMVLFKRMRK 133


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/512 (38%), Positives = 297/512 (58%), Gaps = 12/512 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPIC---VDPGYLWLGMCC 69
           V +NAL+SG+  +        +F +M  +G + N  T + +L  C   +DP +   G   
Sbjct: 219 VSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEF---GKQV 275

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   +K   D D  VG  L+ MY K   ++     FD++  + + +W  +ISGYAQ   A
Sbjct: 276 HAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQA 335

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ-QIQANGFGSNPFLNNA 188
              ++ +R+M+  G+ P+  T    LS C+H+     G ++    ++A  FG + F+ +A
Sbjct: 336 EKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFG-DIFVGSA 394

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           L+++Y +CG ++ A AIF G+  + +VSW  II GY  HG GE A++ F  ML  GI PD
Sbjct: 395 LVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPD 454

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
              F+ VLSACS  GL ++G + F  M   YG+ P  EHY CMVD+LGRAG+ NE    I
Sbjct: 455 EATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFI 514

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
           E M + P   +W  +LGACK+H NV+  E A  K+ ++EPM    Y+LLSNI++     D
Sbjct: 515 EEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWD 574

Query: 369 GIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHD 428
            +  +R +M  R +KK+PG S+VE+ G+VH+F+  D +H +  EIY  LDKL   +    
Sbjct: 575 DVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLSQDGSHPKIREIYAKLDKLGQSLMSIG 634

Query: 429 GTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
              +++      +++E +     HSE+LA++F +++T+    I + KNLRIC DCH F+K
Sbjct: 635 YVPKTEVVLHNVSNKEKMEHLYYHSERLALSFALLSTNAVKPIRIFKNLRICEDCHDFMK 694

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           L+S I +++ +VRD  RFHHFK G CSC+D W
Sbjct: 695 LISDITNQEIVVRDIRRFHHFKRGTCSCQDRW 726



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 158/329 (48%), Gaps = 4/329 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCH-C 71
           V ++A+I+G        EA  LF  MR +G   N  T+  L+    + G L  G   H C
Sbjct: 118 VAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGC 177

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           IC K+G + D  V N L+ MY+K   V+ G K+F+ +    L++WNA++SG+  +     
Sbjct: 178 IC-KYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGR 236

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
              ++ +M   G  P+  TF+ VL SC+ L     G +V   I  N    + F+  AL++
Sbjct: 237 GPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVD 296

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+   L+ A   FD +  + + SWT II GY      E AV+ F +M + GI+P+   
Sbjct: 297 MYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYT 356

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
             S LS CSH    + G +  + +  K G        + +VDL G+ G +  A E I   
Sbjct: 357 LASCLSGCSHMATLENGRQ-LHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHA-EAIFKG 414

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAF 340
           L+  D   W  ++     H   E A  AF
Sbjct: 415 LISRDIVSWNTIISGYSQHGQGEKALEAF 443



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 127/248 (51%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NAL++GY       + + LF KM+E   + +  T+  +L  C + G L  G   H +
Sbjct: 17  VSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTGSLREGKVLHAL 76

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ G ++D  +G  L+ MY KCG+V    K+F ++    ++ W+AMI+G  Q G     
Sbjct: 77  ALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEA 136

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            EL+  M+  G  P+  T   ++S+  ++G    G  +   I   GF S+  ++N LI M
Sbjct: 137 AELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMM 196

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +   ++    +F+ M    +VSW A++ G+          ++F +ML  G +P+   F
Sbjct: 197 YMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTF 256

Query: 253 VSVLSACS 260
           +SVL +CS
Sbjct: 257 ISVLRSCS 264



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 116/227 (51%), Gaps = 2/227 (0%)

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
           ++   +LF  +PEK  ++WNA+++GYAQ G    VL+L+ +MK         T   VL  
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
           CA+ G+   G  +      +G   + FL  +L++MY++CG +  A  +F  +    VV+W
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
           +A+I G    GHG+ A +LF  M + G RP+     S++S  ++ G    G +  +G   
Sbjct: 121 SAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYG-QSIHGCIC 179

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
           KYG +        ++ +  ++  + +  ++ E+M   PD   W ALL
Sbjct: 180 KYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAM-TNPDLVSWNALL 225


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/510 (37%), Positives = 305/510 (59%), Gaps = 5/510 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T  +N +I GYV    +  A+ L+ +M E+GVE ++ T   L   C     +  GM  H 
Sbjct: 50  TFEFNTMIRGYVNVMNMENALFLYYEMLERGVESDNFTYPALFKACASLRSIEEGMQIHG 109

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              K GL+ D  V N L+ MY KCG ++    +F+ +  + + +W+A+I+ +A  G+ + 
Sbjct: 110 YIFKRGLEGDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSE 169

Query: 132 VLELYREMKSLGVC-PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
            L ++ EM   G C P+    V VLS+C HLGA  +G      +  N    N  +  +LI
Sbjct: 170 CLSVFGEMSREGSCRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLI 229

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MY +CG ++K  ++F  M +K  +S++ +I G  +HG G  A+Q+F +ML+ G++PD  
Sbjct: 230 DMYVKCGCIEKGLSLFQRMVKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDV 289

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            ++ VLSAC+HAGL D+GL+ F  MK ++G++P  +HY C+V L+GRAG LN+ALE I S
Sbjct: 290 VYLGVLSACNHAGLVDEGLQCFNRMKLEHGIEPTIQHYGCIVHLMGRAGMLNKALEHIRS 349

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M ++P+  VW  LL ACK H N+E+ E+A   + +L   N G YV+LSN+Y+ A+  + +
Sbjct: 350 MPIKPNEVVWRGLLSACKFHHNLEIGEIAAKSLGELNSSNPGDYVVLSNMYARAKRWEDV 409

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
            ++R  M  +   + PG+S V+++ +++ F+  D +H Q   +Y M+ ++E  ++    +
Sbjct: 410 AKIRTEMARKGFTQTPGFSLVQVERKIYKFVSQDMSHPQCKGMYEMIHQMEWQLKFEGYS 469

Query: 431 KRSDQ----KNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
             + Q     + EE     + HS+KLA+AF +I+TS G  I + +NLR+C DCH + KL+
Sbjct: 470 PDTSQVLFDVDEEEKRQRLKAHSQKLAMAFALIHTSQGAPIRIARNLRMCNDCHTYTKLI 529

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           S I  R+  VRD  RFHHFK G CSC+DYW
Sbjct: 530 SVIYQREITVRDRNRFHHFKDGTCSCRDYW 559



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 129/283 (45%), Gaps = 47/283 (16%)

Query: 84  VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG 143
           V  C ++ +   GS+DY   +F Q+ + G   +N MI GY       + L LY EM   G
Sbjct: 24  VATCALSDW---GSMDYACSIFRQIDQPGTFEFNTMIRGYVNVMNMENALFLYYEMLERG 80

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
           V  D  T+  +  +CA L +   G+++   I   G   + F+ N+LINMY +CG ++ + 
Sbjct: 81  VESDNFTYPALFKACASLRSIEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKCGKIELSC 140

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG-IRPDGTAFVSVLSACSHA 262
           ++F+ M R+ V SW+AII  +   G     + +F EM + G  RP+ +  VSVLSAC+H 
Sbjct: 141 SVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVLSACTHL 200

Query: 263 GLTD-----------------------------------KGLEYFYGMKNKYGLQPGPEH 287
           G  D                                   KGL  F  M  K  L      
Sbjct: 201 GALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQLS----- 255

Query: 288 YTCMVDLLGRAGQLNEALELIESMLVE---PDGAVWGALLGAC 327
           Y+ M+  L   G+  EAL++   ML E   PD  V+  +L AC
Sbjct: 256 YSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSAC 298


>gi|224065074|ref|XP_002301657.1| predicted protein [Populus trichocarpa]
 gi|222843383|gb|EEE80930.1| predicted protein [Populus trichocarpa]
          Length = 504

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/501 (37%), Positives = 296/501 (59%), Gaps = 5/501 (0%)

Query: 21  GYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDL 80
           GY  N  + EA+ ++ +M    +E  +      L  C D   LW+G   H   VK     
Sbjct: 4   GYSKNGFLREALLVYVEMLWNCMEPGNFAFSTALKACADLRELWVGRGVHAQVVKSSEGP 63

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140
           D  V N L+ +Y +C   +   K+FDQ+PE+ + +WN++ISG+ +       L+++R M+
Sbjct: 64  DQVVNNGLLRLYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFRRMQ 123

Query: 141 SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
             G+    VT   +L  CA + A   G E+  QI  +    +  + N+L++MY +CG + 
Sbjct: 124 REGMGFSWVTLTTILPICARVTALLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCGVVD 183

Query: 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
             R +FDGM  K + SW  ++ GY I+G+  VA+ LF+EM   GIRPD   F+++LS CS
Sbjct: 184 YGRRLFDGMRSKDLTSWNTMLTGYAINGYMRVAMDLFNEMASCGIRPDDVTFIALLSGCS 243

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320
           HAGLT+ G + F+ M+  +G+ P  EHY C+VD+LGRAG+++ AL ++++M ++  G++W
Sbjct: 244 HAGLTEDGQKLFHRMEMDFGVSPSLEHYACLVDMLGRAGRIDAALVVVKNMPMKTSGSIW 303

Query: 321 GALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380
           G+LL +C++H  V LAE    ++ +LEP N G YV+LSNIY+ A   D +  VR MM+ R
Sbjct: 304 GSLLNSCRLHNEVPLAEAIANRLFELEPYNPGNYVMLSNIYANAGMWDSVNMVREMMQTR 363

Query: 381 RLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY-RMLDKLENLVQEHDGTKRSD----Q 435
           R++K+ G S++++K ++H F+ G     +  + Y ++ +KL   ++E      +D     
Sbjct: 364 RIRKEAGCSWIQVKNKIHSFVAGGGFEFRNSDEYKKIWNKLREAMEEFGYIPNTDVVLHD 423

Query: 436 KNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFI 495
            N E        HSE+LA  F +I+T+ G  I + KNLR+C DCH +IK+VS++  R  +
Sbjct: 424 VNEETKAMWVCGHSERLATVFSLIHTAAGMPIRITKNLRVCVDCHSWIKIVSRVTGRVIV 483

Query: 496 VRDATRFHHFKSGFCSCKDYW 516
           +RD  RFHHFK G CSC DYW
Sbjct: 484 LRDTNRFHHFKEGACSCNDYW 504



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/269 (33%), Positives = 146/269 (54%), Gaps = 7/269 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+  +       +N+LISG+V    + EA+ +F +M+ +G+  + VT+  +LPIC   
Sbjct: 87  VFDQMPERN--VASWNSLISGFVKEDKLGEALDVFRRMQREGMGFSWVTLTTILPICARV 144

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H   VK     D  V N L+ MYVKCG VDYGR+LFD +  K L +WN M+
Sbjct: 145 TALLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCGVVDYGRRLFDGMRSKDLTSWNTML 204

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GYA NG     ++L+ EM S G+ PD VTF+ +LS C+H G    G ++  +++ + FG
Sbjct: 205 TGYAINGYMRVAMDLFNEMASCGIRPDDVTFIALLSGCSHAGLTEDGQKLFHRMEMD-FG 263

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLF 237
            +P L +   L++M  R G +  A  +   MP KT  S W +++    +H    +A  + 
Sbjct: 264 VSPSLEHYACLVDMLGRAGRIDAALVVVKNMPMKTSGSIWGSLLNSCRLHNEVPLAEAIA 323

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTD 266
           + + +      G  +V + +  ++AG+ D
Sbjct: 324 NRLFELEPYNPGN-YVMLSNIYANAGMWD 351



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 103/253 (40%), Gaps = 4/253 (1%)

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           M  GY++NG     L +Y EM    + P    F   L +CA L    VG  V  Q+  + 
Sbjct: 1   MAIGYSKNGFLREALLVYVEMLWNCMEPGNFAFSTALKACADLRELWVGRGVHAQVVKSS 60

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
            G +  +NN L+ +Y +C    +   +FD MP + V SW ++I G+        A+ +F 
Sbjct: 61  EGPDQVVNNGLLRLYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFR 120

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
            M + G+        ++L  C+       G E  +    K   +P       +VD+  + 
Sbjct: 121 RMQREGMGFSWVTLTTILPICARVTALLSGKE-IHAQIVKSARRPDVLVLNSLVDMYVKC 179

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVL 356
           G ++    L + M    D   W  +L    I+  + +A   F ++    + P +  +  L
Sbjct: 180 GVVDYGRRLFDGMR-SKDLTSWNTMLTGYAINGYMRVAMDLFNEMASCGIRPDDVTFIAL 238

Query: 357 LSNIYSEARNLDG 369
           LS         DG
Sbjct: 239 LSGCSHAGLTEDG 251


>gi|242055215|ref|XP_002456753.1| hypothetical protein SORBIDRAFT_03g041980 [Sorghum bicolor]
 gi|241928728|gb|EES01873.1| hypothetical protein SORBIDRAFT_03g041980 [Sorghum bicolor]
          Length = 521

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/519 (39%), Positives = 300/519 (57%), Gaps = 22/519 (4%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICV----DPGYLWLGMC 68
           V YNA IS      L + A++LF +MR +G+  +  T+  LL         PG +     
Sbjct: 10  VAYNAAISRCARAGLYARALALFREMRGRGLRADEYTLPPLLNSAALLRGPPGAV---AA 66

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVK---CGSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
            H + ++ GL     V N L+  Y +    G     R +FD++P + ++TW ++++G A+
Sbjct: 67  LHALLLRAGLAHHLHVANALVDAYARLPCAGGAATARAVFDEMPRRDVVTWTSLLTGLAR 126

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG--FGSNP 183
            G     +  Y  M + GV  D      VLSSCA     S  L+V + + A     G  P
Sbjct: 127 AGAHAAAVRAYHGMVAAGVQTDEFAVAAVLSSCAG----STALDVGRSVHAAAVHLGLCP 182

Query: 184 F--LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           F  + N+L++MYA+ G L  ARA+FD MP +  ++WTA+I GY  +G G  +++++ +M+
Sbjct: 183 FRSVGNSLVSMYAKTGALHDARAVFDAMPARCTITWTALIVGYAQNGRGRRSLEVYTDMV 242

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301
           +SG RPD   F+ +L ACSHAGL D G ++F  M   YG+ PGP+HY CMVDLLGRAG+L
Sbjct: 243 RSGCRPDYVTFIGLLFACSHAGLVDAGRDHFRSMAVDYGIAPGPDHYACMVDLLGRAGRL 302

Query: 302 NEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY 361
           +EA++L+     E D  VW +LLGAC++H+N ELAE A   V +L+P +   YV+LSN+Y
Sbjct: 303 DEAMDLLNRSSTELDATVWKSLLGACRVHRNAELAERAAEMVWRLDPTDAVPYVMLSNLY 362

Query: 362 SEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLE 421
           S AR    + R+R +M+ R + K+PG S+V + G  HLF V DR H +  EIYR ++++ 
Sbjct: 363 SRARRWGDVARIRALMKARGITKEPGCSWVGVNGVTHLFHVEDRGHPRAAEIYRKVEEMT 422

Query: 422 NLVQEHDGTKRSDQKNSEEHLNDTE----VHSEKLAIAFGIINTSPGTEIVVMKNLRICG 477
             ++       +D    +E     E     HSE+LA+AFG++       I V KNLR+CG
Sbjct: 423 ERIRAEGYVPDTDWALQDEAPEGRERGLAYHSERLAVAFGLLAVPAAAPIRVFKNLRVCG 482

Query: 478 DCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           DCH  IK+V+K   R  I+RDA  FHH K G CSC DYW
Sbjct: 483 DCHTAIKMVAKAYGRVIILRDANCFHHMKDGECSCGDYW 521



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 103/204 (50%), Gaps = 5/204 (2%)

Query: 112 GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL-GAHSVGLEV 170
           G++ +NA IS  A+ GL    L L+REM+  G+  D  T   +L+S A L G       +
Sbjct: 8   GVVAYNAAISRCARAGLYARALALFREMRGRGLRADEYTLPPLLNSAALLRGPPGAVAAL 67

Query: 171 EQQIQANGFGSNPFLNNALINMYAR---CGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH 227
              +   G   +  + NAL++ YAR    G    ARA+FD MPR+ VV+WT+++ G    
Sbjct: 68  HALLLRAGLAHHLHVANALVDAYARLPCAGGAATARAVFDEMPRRDVVTWTSLLTGLARA 127

Query: 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH 287
           G    AV+ +  M+ +G++ D  A  +VLS+C+ +   D G    +      GL P    
Sbjct: 128 GAHAAAVRAYHGMVAAGVQTDEFAVAAVLSSCAGSTALDVG-RSVHAAAVHLGLCPFRSV 186

Query: 288 YTCMVDLLGRAGQLNEALELIESM 311
              +V +  + G L++A  + ++M
Sbjct: 187 GNSLVSMYAKTGALHDARAVFDAM 210


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/514 (38%), Positives = 296/514 (57%), Gaps = 12/514 (2%)

Query: 10  HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCC 69
           H  + + ALISGYV +    EA+ LF  M    V  N  T   +L  C       +G   
Sbjct: 312 HNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQL 371

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   +K GL     VGN L+ MY + G+++  RK F+ + EK LI++N      A+   +
Sbjct: 372 HGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKALDS 431

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
                   E++  GV     T+  +LS  A +G    G ++   I  +GFG+N  +NNAL
Sbjct: 432 DESFN--HEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNAL 489

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           I+MY++CGN + A  +F+ M  + V++WT+II G+  HG    A++LF EML+ G++P+ 
Sbjct: 490 ISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNE 549

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
             +++VLSACSH GL D+  ++F  M   + + P  EHY CMVDLLGR+G L EA+E I 
Sbjct: 550 VTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFIN 609

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDG 369
           SM  + D  VW   LG+C++H+N +L E A  K+++ EP +   Y+LLSN+Y+     D 
Sbjct: 610 SMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEGRWDD 669

Query: 370 IMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDG 429
           +  +R  M++++L K+ GYS++E+  +VH F VGD +H Q  +IY  LD+L   ++    
Sbjct: 670 VAALRKSMKQKKLIKETGYSWIEVDNQVHKFHVGDTSHPQARKIYDELDELALKIKNLGY 729

Query: 430 TKRSD-------QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLF 482
              +D        +  E++L     HSEK+A+A+ +I+T     I V KNLR+CGDCH  
Sbjct: 730 IPNTDFVLHDVEDEQKEQYLFQ---HSEKIAVAYALISTPKPKPIRVFKNLRVCGDCHTA 786

Query: 483 IKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           IK +S +  R+ +VRDA RFHH K G CSC DYW
Sbjct: 787 IKYISIVTGREIVVRDANRFHHIKDGKCSCNDYW 820



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/295 (30%), Positives = 146/295 (49%), Gaps = 8/295 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEI---NSVTMLCLLPICVDPGYLWLGMCC 69
           V ++A+IS +  NS+ S A+  F  M +    I   N      LL  C +P +   G+  
Sbjct: 108 VSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAI 167

Query: 70  HCICVKFG-LDLDFSVGNCLMTMYVKCG-SVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
               +K G  D    VG  L+ M+ K G  +   R +FD++  K L+TW  MI+ Y+Q G
Sbjct: 168 FAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLG 227

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
           L    ++L+  +      PD  T   +LS+C  L   S+G ++   +  +G  S+ F+  
Sbjct: 228 LLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGC 287

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
            L++MYA+   ++ +R IF+ M    V+SWTA+I GY      + A++LF  ML   + P
Sbjct: 288 TLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTP 347

Query: 248 DGTAFVSVLSACSHAGLTDKGL-EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301
           +   F SVL AC  A L D G+ +  +G   K GL         ++++  R+G +
Sbjct: 348 NCFTFSSVLKAC--ASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTM 400



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 155/334 (46%), Gaps = 40/334 (11%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV--PE 110
           LL  C+  G L LG   H   +  GL LD  + N L+T+Y KCG  +    +F  +   +
Sbjct: 45  LLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHK 104

Query: 111 KGLITWNAMISGYAQNGLATHVLELYREMKSLG---VCPDAVTFVGVLSSCAHLGAHSVG 167
           + L++W+A+IS +A N + +  L  +  M       + P+   F  +L SC++    + G
Sbjct: 105 RDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTG 164

Query: 168 LEVEQQIQANG-FGSNPFLNNALINMYARCG-NLKKARAIFDGMPRKTVVSWTAIIGGYG 225
           L +   +   G F S+  +  ALI+M+ + G +++ AR +FD M  K +V+WT +I  Y 
Sbjct: 165 LAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYS 224

Query: 226 IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS-----------HAGLTDKGL--EYF 272
             G  + AV LF  +L S   PD     S+LSAC            H+ +   GL  + F
Sbjct: 225 QLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVF 284

Query: 273 YG--MKNKYGLQPGPEH---------------YTCMVDLLGRAGQLNEALELIESML--- 312
            G  + + Y      E+               +T ++    ++ Q  EA++L  +ML   
Sbjct: 285 VGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGH 344

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
           V P+   + ++L AC    +  + +   G+ IKL
Sbjct: 345 VTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKL 378


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/523 (39%), Positives = 294/523 (56%), Gaps = 13/523 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPIC--- 57
           VFD+  +     V + +LI+GY  N +  EA+ L   M +   + N  T   LL      
Sbjct: 108 VFDQMRRKD--MVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAY 165

Query: 58  VDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWN 117
            D G    G   H + VK G   D  VG+ L+ MY +CG +D    +FD++  K  ++WN
Sbjct: 166 ADSG---TGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWN 222

Query: 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
           A+ISG+A+ G     L  + EM   G      T+  V SS A LGA   G  V   +  +
Sbjct: 223 ALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKS 282

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
                 F+ N L++MYA+ G++  AR +FD +  K +V+W +++  +  +G G+ AV  F
Sbjct: 283 RQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHF 342

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
           +EM KSG+  +   F+ +L+ACSH GL  +G  YF  MK +Y L+P  +HY  +V LLGR
Sbjct: 343 EEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFEMMK-EYDLEPEIDHYVTVVALLGR 401

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
           AG LN AL  I  M +EP  AVWGALL AC++HKN ++ + A   V +L+P ++G  VLL
Sbjct: 402 AGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLL 461

Query: 358 SNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML 417
            NIY+     D   RVRMMM+   +KK+P  S+VE++  VH+F+  D  H Q  EIY+M 
Sbjct: 462 YNIYASTGQWDAAARVRMMMKTTGVKKEPACSWVEMENSVHMFVANDDTHPQAEEIYKMW 521

Query: 418 DKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
            ++   +++       D      + +E   + + HSEKLA+AF +I    G  I +MKN+
Sbjct: 522 GEISKKIRKEGYVPDMDYVLLHVDDQEKEANLQYHSEKLALAFALIEMPAGATIRIMKNI 581

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           RICGDCH   K +SK+  R+ +VRD  RFHHF SG CSC DYW
Sbjct: 582 RICGDCHSAFKYISKVFGREIVVRDTNRFHHFSSGSCSCGDYW 624



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 127/247 (51%), Gaps = 4/247 (1%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140
           D  + N L+ MY KC SV   R +FDQ+  K +++W ++I+GYAQN +    + L   M 
Sbjct: 85  DAFLDNSLIHMYCKCRSVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGML 144

Query: 141 SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
                P+  TF  +L +         G ++       G+  + ++ +AL++MYARCG + 
Sbjct: 145 KGRFKPNGFTFASLLKAAGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMD 204

Query: 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
            A A+FD +  K  VSW A+I G+   G GE A+  F EML++G       + SV S+ +
Sbjct: 205 MATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIA 264

Query: 261 HAGLTDKG-LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAV 319
             G  ++G   + + +K++  L     +   ++D+  ++G + +A ++ +  +   D   
Sbjct: 265 RLGALEQGKWVHAHVIKSRQKLTAFVGN--TLLDMYAKSGSMIDARKVFDR-VDNKDLVT 321

Query: 320 WGALLGA 326
           W ++L A
Sbjct: 322 WNSMLTA 328



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 106/219 (48%), Gaps = 4/219 (1%)

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
           + P    +   +++CA         ++   + ++ F  + FL+N+LI+MY +C ++  AR
Sbjct: 47  LAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDAR 106

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG 263
            +FD M RK +VSWT++I GY  +     A+ L   MLK   +P+G  F S+L A     
Sbjct: 107 NVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYA 166

Query: 264 LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGAL 323
            +  G +  + +  K G        + ++D+  R G+++ A  + +  L   +G  W AL
Sbjct: 167 DSGTGRQ-IHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDK-LDSKNGVSWNAL 224

Query: 324 LGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNI 360
           +       + E A + F ++++   E  +  Y  + S+I
Sbjct: 225 ISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSI 263


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/509 (38%), Positives = 297/509 (58%), Gaps = 6/509 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + ++ LIS Y  +    +A  +F +M    V  N  ++  +L  C +  +L LG   H +
Sbjct: 318 ILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNL 377

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G + +  VGN LM +Y KC +++   ++F  + +   ++WN +I GY Q+G A   
Sbjct: 378 VIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDA 437

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L +++EM++  V    VTF  VL +CA+  +    +++   I+ + F ++  + N+LI+ 
Sbjct: 438 LSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDT 497

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG ++ A  +F+ + +  VVSW AII GY +HG    A++LF+ M KS  +P+   F
Sbjct: 498 YAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTF 557

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           V++LS C   GL ++GL  F  M   + ++P  +HYTC+V LLGRAG+LN+AL+ I  + 
Sbjct: 558 VALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIGDIP 617

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
             P   VW ALL +C +HKNV L + +  KV+++EP +   YVLLSN+Y+ A  LD +  
Sbjct: 618 STPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDETTYVLLSNMYAAAGILDQVAL 677

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           +R  MR   +KK+ G S+VE+KG VH F VG  +H     I  ML+ L NL    +G   
Sbjct: 678 LRKSMRNIGVKKEVGLSWVEIKGEVHAFSVGSADHPDMRIINAMLEWL-NLKASREGYVP 736

Query: 433 S-----DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
                    + EE      VHSE+LA+A+G+  T PG  I +MKNLR C DCH   K++S
Sbjct: 737 DINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPGHPIRIMKNLRSCLDCHTVFKVIS 796

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KIV R+ +VRD  RFHHF  G CSC DYW
Sbjct: 797 KIVQREIVVRDINRFHHFDEGICSCGDYW 825



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 116/426 (27%), Positives = 194/426 (45%), Gaps = 13/426 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD  I    +T  + A++S Y  N +  +A++ F KMR  G + N   +  +L   V  
Sbjct: 207 VFDGIIWKDAVT--WTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCL 264

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
               LG   H   VK   D +  VG  L+ MY KCG ++  R +F+ +P   +I W+ +I
Sbjct: 265 SSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLI 324

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           S YAQ+       E++  M    V P+  +  GVL +CA++    +G ++   +   G+ 
Sbjct: 325 SRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYE 384

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S  F+ NAL+++YA+C N++ +  IF  +     VSW  II GY   G  E A+ +F EM
Sbjct: 385 SELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEM 444

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
             + +      F SVL AC++       ++  + +  K            ++D   + G 
Sbjct: 445 RAAHVLSTQVTFSSVLRACANTASIKHTVQ-IHSLIEKSTFNNDTIVCNSLIDTYAKCGC 503

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
           + +AL++ ES +++ D   W A++    +H     A   F ++ K   +P +  +  LLS
Sbjct: 504 IRDALKVFES-IIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLS 562

Query: 359 NIYSEARNLDGIMRVRMMMRERRLKK--DPGYSYVELKGRV-----HLFMVGDRNHHQTV 411
              S      G+     M  + R+K   D     V L GR       L  +GD     + 
Sbjct: 563 VCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSP 622

Query: 412 EIYRML 417
            ++R L
Sbjct: 623 MVWRAL 628



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 152/317 (47%), Gaps = 3/317 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  L+ GY L     EA  LF +++ +G E+N   +  +L + V      L  C H  
Sbjct: 116 VSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAPGLTCCIHAC 175

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K G D +  VG+ L+  Y  CG+V + R +FD +  K  +TW AM+S Y++N +    
Sbjct: 176 ACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDA 235

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L  + +M+  G  P+      VL +   L +  +G  +          + P +  AL++M
Sbjct: 236 LNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDM 295

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG ++ AR +F+ +P   V+ W+ +I  Y      E A ++F  M++S + P+  + 
Sbjct: 296 YAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSL 355

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
             VL AC++    D G +  + +  K G +        ++D+  +   +  +LE+  S L
Sbjct: 356 SGVLQACANVAFLDLG-QQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRS-L 413

Query: 313 VEPDGAVWGALL-GACK 328
            + +   W  ++ G C+
Sbjct: 414 RDANEVSWNTIIVGYCQ 430



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 126/277 (45%), Gaps = 8/277 (2%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFG--LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE 110
           LL  C+  G    G   H   V+ G    LD    N L+ +Y K G +   R+LFD +PE
Sbjct: 53  LLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGMPE 112

Query: 111 KGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEV 170
           + ++++  ++ GYA  G       L+R ++  G   +      +L     + A  +   +
Sbjct: 113 RNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAPGLTCCI 172

Query: 171 EQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHG 230
                  G   N F+ ++LI+ Y+ CG +  AR +FDG+  K  V+WTA++  Y  +   
Sbjct: 173 HACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIP 232

Query: 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSA--CSHAGLTDKGLEYFYGMKNKYGLQPGPEHY 288
           E A+  F +M  +G +P+     SVL A  C  + +  KG+   +G   K      P   
Sbjct: 233 EDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGI---HGCAVKTLCDTEPHVG 289

Query: 289 TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
             ++D+  + G + +A  + E ++   D  +W  L+ 
Sbjct: 290 GALLDMYAKCGYIEDARTVFE-IIPHDDVILWSFLIS 325



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 6/134 (4%)

Query: 138 EMKSLGVCP-DAVTFVGVLSSCAHLGAHSVGLEVEQQI-QANGFGS-NPFLNNALINMYA 194
           E+ SL +   D+     +L  C   G    G  V  ++ Q  G    + F  N L+N+YA
Sbjct: 36  ELASLALPKLDSYACARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYA 95

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG---TA 251
           + G L  AR +FDGMP + +VS+  ++ GY + G  E A  LF  + + G   +    T 
Sbjct: 96  KLGPLAAARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTT 155

Query: 252 FVSVLSACSHAGLT 265
            + VL A    GLT
Sbjct: 156 ILKVLVAMDAPGLT 169


>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
          Length = 669

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/506 (41%), Positives = 294/506 (58%), Gaps = 52/506 (10%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +NA+ISG+    L   A+ +F ++   Q  + ++ TM  +LP                
Sbjct: 79  VSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILP---------------- 122

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                      S+G        +   +   + +FD++  KGLI+WNAM++ Y  N +   
Sbjct: 123 -----------SMGK------ARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVE 165

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            +EL+  M+  G+ PDAVT   VL SC  + A S+G  + + I+     S+  L NAL++
Sbjct: 166 AVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMD 225

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA CG LK+AR +FD M  + VVSWT+II  YG HGHG  A+ LF++M   G+ PD  A
Sbjct: 226 MYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIA 285

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           FV++L+ACSHAGL D G  YFY M +++ + P  EHY CMVDLLGRAG + EA + I  M
Sbjct: 286 FVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVM 345

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            ++P+  VWGALLGAC+IH N+++  LA   +++L P  TGYYVLLSNIY+ A     + 
Sbjct: 346 PIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVS 405

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----- 426
            VR +M  + +KK PG S  EL  RVH F +GD +H Q+  IY+ L +L   ++E     
Sbjct: 406 MVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQSKMIYKKLSELLRRIREMGYNP 465

Query: 427 ------HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCH 480
                 HD     ++++ E HL+   VHSEKLAIAF +INT+PGT I +  NLR C DCH
Sbjct: 466 EVEATLHD----VEEEDKEGHLS---VHSEKLAIAFLLINTNPGTPIRITMNLRTCSDCH 518

Query: 481 LFIKLVSKIVDRQFIVRDATRFHHFK 506
              KL+S I  R+ I++D  R H+ K
Sbjct: 519 HAAKLISTIAGREIILKDVNRIHYMK 544



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 127/312 (40%), Gaps = 71/312 (22%)

Query: 54  LPI----CVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP 109
           LP+    C     L LG   H    + GLD +  V +  ++MY +CG  D   ++F+++ 
Sbjct: 15  LPVGFKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQ 74

Query: 110 EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC-PDAVTFVGVLSSCAHLGAHSVGL 168
            + +++WNAMISG+A  GL    ++++RE+ +L    PDA T   +L S           
Sbjct: 75  YRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGK-------- 126

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
                                    AR  ++   + +FD M  K ++SW A++  Y  + 
Sbjct: 127 -------------------------ARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNE 161

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK---------- 278
               AV+LF  M K GI PD     +VL +C        G      +K +          
Sbjct: 162 MHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLEN 221

Query: 279 -----YG----LQPGPE-----------HYTCMVDLLGRAGQLNEALELIESML---VEP 315
                Y     L+   +            +T ++   GR G   EA++L E M    +EP
Sbjct: 222 ALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEP 281

Query: 316 DGAVWGALLGAC 327
           D   + A+L AC
Sbjct: 282 DSIAFVAILAAC 293



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 90/208 (43%), Gaps = 16/208 (7%)

Query: 143 GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202
           G+ P  +       SCA      +G ++       G   N F+ ++ I+MYARCG    A
Sbjct: 7   GLLPGPLHLPVGFKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDA 66

Query: 203 RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK-SGIRPDGTAFVSVLSACSH 261
             +F+ M  + VVSW A+I G+   G    A+ +F E++     +PD     S+L +   
Sbjct: 67  YQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGK 126

Query: 262 AGLTDKGL--EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML---VEPD 316
           A + D  L    F  M+ K     G   +  M+ +        EA+EL   M    +EPD
Sbjct: 127 ARVEDIALLKGVFDEMRFK-----GLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPD 181

Query: 317 GAVWGALLGACKIHKNVELAELAFGKVI 344
                 +L +C      E++ L+ GK I
Sbjct: 182 AVTLATVLPSCG-----EVSALSLGKRI 204


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/509 (38%), Positives = 296/509 (58%), Gaps = 5/509 (0%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPG-YLWLGMCCHC 71
            V +NALI GY  +    +A++ F  MR +GV  N +T++ +L  C+ PG  L  G   H 
Sbjct: 519  VAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHA 578

Query: 72   ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              V  G + D  V N L+TMY KCG +   + LF+ +  + +ITWNAM++  A +G    
Sbjct: 579  YIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEE 638

Query: 132  VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            VL+L  +M+S GV  D  +F   LS+ A L     G ++       GF  + F+ NA  +
Sbjct: 639  VLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAAD 698

Query: 192  MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
            MY++CG + +   +      +++ SW  +I   G HG+ E     F EML+ GI+P    
Sbjct: 699  MYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVT 758

Query: 252  FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            FVS+L+ACSH GL DKGL Y+  +   +GL+P  EH  C++DLLGR+G+L EA   I  M
Sbjct: 759  FVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKM 818

Query: 312  LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
             ++P+  VW +LL +CKIH N++    A   + KLEP +   YVL SN+++     + + 
Sbjct: 819  PMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVE 878

Query: 372  RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH---- 427
             VR  M  + +KK    S+V+LK +V  F +GDR H QT+EIY  L+ ++ L++E     
Sbjct: 879  NVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVA 938

Query: 428  DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
            D ++     + E+  ++   HSE+LA+A+ +++T  G+ + + KNLRIC DCH   K VS
Sbjct: 939  DTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVS 998

Query: 488  KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +++ R+ ++RD  RFHHF+ G CSCKDYW
Sbjct: 999  RVIGRRIVLRDQYRFHHFERGLCSCKDYW 1027



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 156/335 (46%), Gaps = 5/335 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD+   S   T+ +N++ + Y  N  + E+  +F  MR    E+NS T+  LL +    
Sbjct: 307 IFDQ--MSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHV 364

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
            +   G   H + VK G D    V N L+ MY   G       +F Q+P K LI+WN+++
Sbjct: 365 DHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLM 424

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           + +  +G +   L L   M S G   + VTF   L++C        G  +   +  +G  
Sbjct: 425 ASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLF 484

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            N  + NAL++MY + G + ++R +   MPR+ VV+W A+IGGY      + A+  F  M
Sbjct: 485 YNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTM 544

Query: 241 LKSGIRPDGTAFVSVLSACSHAG-LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
              G+  +    VSVLSAC   G L ++G +  +      G +        ++ +  + G
Sbjct: 545 RVEGVSSNYITVVSVLSACLLPGDLLERG-KPLHAYIVSAGFESDEHVKNSLITMYAKCG 603

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVE 334
            L+ + +L    L   +   W A+L A   H + E
Sbjct: 604 DLSSSQDLFNG-LDNRNIITWNAMLAANAHHGHGE 637



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 138/285 (48%), Gaps = 3/285 (1%)

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           VK GL+   +V N L++M    G+VDY   +FDQ+ E+  I+WN++ + YAQNG      
Sbjct: 277 VKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESF 336

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
            ++  M+      ++ T   +LS   H+     G  +   +   GF S   + N L+ MY
Sbjct: 337 RIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMY 396

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
           A  G   +A  +F  MP K ++SW +++  +   G    A+ L   M+ SG   +   F 
Sbjct: 397 AGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFT 456

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           S L+AC      +KG    +G+    GL         +V + G+ G+++E+  ++  M  
Sbjct: 457 SALAACFTPDFFEKG-RILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQM-P 514

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
             D   W AL+G     ++ + A  AF + +++E +++ Y  ++S
Sbjct: 515 RRDVVAWNALIGGYAEDEDPDKALAAF-QTMRVEGVSSNYITVVS 558



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 126/271 (46%), Gaps = 30/271 (11%)

Query: 66  GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
           G   H +CVK  + L     N L+ MY K G V   R LFD +P +  ++WN M+SG  +
Sbjct: 91  GRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVR 150

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA-HSVGLEVEQQIQANGFGSNPF 184
            GL    +E +R+M  LG+ P +     ++++C   G+    G++V   +  +G  S+ +
Sbjct: 151 VGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVY 210

Query: 185 LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF-DEMLKS 243
           ++ A++++Y   G +  +R +F+ MP + VVSWT+++ GY   G  E  + ++ DE L  
Sbjct: 211 VSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKDESLGR 270

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
            I                            G   K GL+        ++ +LG  G ++ 
Sbjct: 271 QI---------------------------IGQVVKSGLESKLAVENSLISMLGSMGNVDY 303

Query: 304 ALELIESMLVEPDGAVWGALLGACKIHKNVE 334
           A  + + M  E D   W ++  A   + ++E
Sbjct: 304 ANYIFDQM-SERDTISWNSIAAAYAQNGHIE 333



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 144/319 (45%), Gaps = 36/319 (11%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWL-GMCCHC 71
           V +N ++SG V   L  E +  F KM + G++ +S  +  L+  C   G ++  G+  H 
Sbjct: 139 VSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHG 198

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              K GL  D  V   ++ +Y   G V   RK+F+++P++ +++W +++ GY+  G    
Sbjct: 199 FVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEE 258

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
           V+++Y++                          S+G ++  Q+  +G  S   + N+LI+
Sbjct: 259 VIDIYKD-------------------------ESLGRQIIGQVVKSGLESKLAVENSLIS 293

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           M    GN+  A  IFD M  +  +SW +I   Y  +GH E + ++F  M +     + T 
Sbjct: 294 MLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTT 353

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR----AGQLNEALEL 307
             ++LS   H      G    +G+  K G     +   C+ + L R    AG+  EA  L
Sbjct: 354 VSTLLSVLGHVDHQKWG-RGIHGLVVKMGF----DSVVCVCNTLLRMYAGAGRSVEA-NL 407

Query: 308 IESMLVEPDGAVWGALLGA 326
           +   +   D   W +L+ +
Sbjct: 408 VFKQMPTKDLISWNSLMAS 426



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 15/172 (8%)

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
            N LINMY + G +K AR +FD MP +  VSW  ++ G    G     ++ F +M   GI
Sbjct: 110 TNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGI 169

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
           +P      S+++AC  +G   +     +G   K GL       T ++ L G  G ++ + 
Sbjct: 170 KPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSR 229

Query: 306 ELIESMLVEPDGAV--WGALL----------GACKIHKNVELAELAFGKVIK 345
           ++ E M   PD  V  W +L+              I+K+  L     G+V+K
Sbjct: 230 KVFEEM---PDRNVVSWTSLMVGYSDKGEPEEVIDIYKDESLGRQIIGQVVK 278


>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 934

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/509 (39%), Positives = 293/509 (57%), Gaps = 5/509 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLW-LGMCCHC 71
           V +NALI G+  N   + A+  F  +RE+GV +N +T++ LL   + P  L   GM  H 
Sbjct: 426 VTWNALIGGHADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDDLLDHGMPIHA 485

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             V  G +L+  V + L+TMY +CG ++    +FD +  K   TWNA++S  A  G    
Sbjct: 486 HIVVAGFELETFVQSSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSANAHYGPGEE 545

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L+L  +M++ G+  D  +F    +   +L     G ++   I  +GF SN ++ NA ++
Sbjct: 546 ALKLIIKMRNDGIHLDQFSFSVAHAIIGNLTLLDEGQQLHSLIIKHGFESNDYVLNATMD 605

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY +CG +     I      ++  SW  +I     HG  + A + F EML  G+RPD   
Sbjct: 606 MYGKCGEIDDVFRILPQPRSRSQRSWNILISALARHGFFQQAREAFHEMLDLGLRPDHVT 665

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           FVS+LSACSH GL D+GL YF  M  K+G+  G EH  C++DLLGRAG+L EA   I  M
Sbjct: 666 FVSLLSACSHGGLVDEGLAYFSSMSTKFGVPTGIEHCVCIIDLLGRAGKLTEAENFINKM 725

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            V P   VW +LL ACKIH N+ELA  A  ++ +L+  +   YVL SN+ +  R    + 
Sbjct: 726 PVPPTDLVWRSLLAACKIHGNLELARKAADRLFELDSSDDSAYVLYSNVCASTRRWRDVE 785

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH---- 427
            VR  M    +KK P  S+V+LK +V  F +GD+ H Q  EIY  L++L+ +++E     
Sbjct: 786 NVRKQMESHNIKKKPACSWVKLKNQVTTFGMGDQYHPQNAEIYAKLEELKKIIREAGYMP 845

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           D +      + E+  ++   HSE++A+AFG+IN+S G+ + + KNLR+CGDCH   K+VS
Sbjct: 846 DTSYSLQDTDEEQKEHNLWNHSERIALAFGLINSSEGSPLRIFKNLRVCGDCHSVFKMVS 905

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +I+ R+ I+RDA RFHHF SG CSC DYW
Sbjct: 906 QIIGRKIILRDAYRFHHFSSGKCSCSDYW 934



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 160/327 (48%), Gaps = 8/327 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+  +    T+ +N++I+  V N    +++  F +MR    + + +T+  LLP+C   
Sbjct: 217 VFDDMKERD--TISWNSIITASVHNGHCEKSLEYFSQMRYTHAKTDYITISALLPVCGSA 274

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H + VK GL+ +  V N L++MY + G  +    +F ++ E+ LI+WN+M+
Sbjct: 275 QNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMM 334

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           + +  NG     LEL  EM       + VTF   LS+C +L    +   V   +   G  
Sbjct: 335 ASHVDNGNYPRALELLIEMLQTRKATNYVTFTTALSACYNLETLKI---VHAFVILLGLH 391

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            N  + NAL+ MY + G++  A+ +   MP +  V+W A+IGG+  +     A++ F+ +
Sbjct: 392 HNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGHADNKEPNAAIEAFNLL 451

Query: 241 LKSGIRPDGTAFVSVLSA-CSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
            + G+  +    V++LSA  S   L D G+   +      G +      + ++ +  + G
Sbjct: 452 REEGVPVNYITIVNLLSAFLSPDDLLDHGMP-IHAHIVVAGFELETFVQSSLITMYAQCG 510

Query: 300 QLNEALELIESMLVEPDGAVWGALLGA 326
            LN +   I  +L   + + W A+L A
Sbjct: 511 DLNTS-NYIFDVLANKNSSTWNAILSA 536



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 153/327 (46%), Gaps = 5/327 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+  +    +  +N L+SG+V      +A+  F  M E GV  +S     L+  C   
Sbjct: 14  VFDKMPERNEAS--WNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYVAASLVTACDRS 71

Query: 61  GYLWLG-MCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
           G +  G    H   +K GL  D  VG  L+  Y   G V     +F ++ E  +++W ++
Sbjct: 72  GCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEIEEPNIVSWTSL 131

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           + GYA NG    V+ +YR ++  GV  +      V+ SC  L    +G +V   +  +G 
Sbjct: 132 MVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGYQVLGSVIKSGL 191

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            +   + N+LI+M+  C ++++A  +FD M  +  +SW +II     +GH E +++ F +
Sbjct: 192 DTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNGHCEKSLEYFSQ 251

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M  +  + D     ++L  C  A     G    +GM  K GL+        ++ +  +AG
Sbjct: 252 MRYTHAKTDYITISALLPVCGSAQNLRWG-RGLHGMVVKSGLESNVCVCNSLLSMYSQAG 310

Query: 300 QLNEALELIESMLVEPDGAVWGALLGA 326
           +  +A E +   + E D   W +++ +
Sbjct: 311 KSEDA-EFVFHKMRERDLISWNSMMAS 336



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 114/238 (47%), Gaps = 5/238 (2%)

Query: 91  MYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVT 150
           MY K GS+++ + +FD++PE+   +WN ++SG+ + G     ++ +  M   GV P +  
Sbjct: 1   MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60

Query: 151 FVGVLSSCAHLGAHSVG-LEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
              ++++C   G  + G  +V   +   G   + F+  +L++ Y   G + +   +F  +
Sbjct: 61  AASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEI 120

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
               +VSWT+++ GY  +G  +  + ++  + + G+  +  A  +V+ +C    L DK L
Sbjct: 121 EEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSC--GVLVDKML 178

Query: 270 EY-FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
            Y   G   K GL         ++ + G    + EA  + + M  E D   W +++ A
Sbjct: 179 GYQVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDM-KERDTISWNSIITA 235


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/522 (37%), Positives = 303/522 (58%), Gaps = 17/522 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +     V +  +I+GY  N+ V  A  LF  M E+  E++  +ML         
Sbjct: 194 IFDEMRERN--VVTWTTMITGYRQNNRVDVARKLFEVMPEK-TEVSWTSMLL-------- 242

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVG-NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
           GY   G           + +   +  N ++  + + G +   R++FD + ++   TW  M
Sbjct: 243 GYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGM 302

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I  Y + G     L+L+ +M+  GV P   + + +LS CA L +   G +V   +    F
Sbjct: 303 IKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQF 362

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             + ++ + L+ MY +CG L KA+ +FD    K ++ W +II GY  HG GE A+++F E
Sbjct: 363 DDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHE 422

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M  SG  P+    +++L+ACS+AG  ++GLE F  M++K+ + P  EHY+C VD+LGRAG
Sbjct: 423 MPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAG 482

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
           Q+++A+ELIESM ++PD  VWGALLGACK H  ++LAE+A  K+ + EP N G YVLLS+
Sbjct: 483 QVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSS 542

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGD-RNHHQTVEIYRMLD 418
           I +       +  VR  MR   + K PG S++E+  +VH+F  G  +NH +   I  ML+
Sbjct: 543 INASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMMLE 602

Query: 419 KLENLVQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLR 474
           K + L++E     D +      + EE ++    HSE+LA+A+G++    G  I VMKNLR
Sbjct: 603 KTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLR 662

Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +CGDCH  IKL+SK+ +R+ I+RDA RFHHF +G CSC+DYW
Sbjct: 663 VCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 121/289 (41%), Gaps = 45/289 (15%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGV----------------- 43
           +FDE   S    V +N L+SGY+ N ++ EA ++F  M E+ V                 
Sbjct: 70  LFDE--MSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVG 127

Query: 44  ----------EINSVTMLCLLPICVDPGYLWLGMCCH-CICVKFGLDLDFSVGNCLMTMY 92
                     E N V+   +    +D G +      +  + VK     D      ++   
Sbjct: 128 EAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVK-----DVVASTNMIGGL 182

Query: 93  VKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFV 152
            + G VD  R +FD++ E+ ++TW  MI+GY QN       +L+  M         V++ 
Sbjct: 183 CREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPE----KTEVSWT 238

Query: 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN-NALINMYARCGNLKKARAIFDGMPR 211
            +L     LG    G   + +         P +  NA+I  +   G + KAR +FD M  
Sbjct: 239 SML-----LGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMED 293

Query: 212 KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
           +   +W  +I  Y   G    A+ LF +M K G+RP   + +S+LS C+
Sbjct: 294 RDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCA 342



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 145/348 (41%), Gaps = 66/348 (18%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N+++SGY  N L  EA  LF +M E+ V                    W          
Sbjct: 51  WNSIVSGYFSNGLPKEARQLFDEMSERNV------------------VSW---------- 82

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
                      N L++ Y+K   +   R +F+ +PE+ +++W AM+ GY Q G+      
Sbjct: 83  -----------NGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAES 131

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSV--GLEVEQQIQANGFGSNPFLNNALINM 192
           L+  M         V F G++       A  +   + V+  + +            +I  
Sbjct: 132 LFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTN----------MIGG 181

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT-- 250
             R G + +AR IFD M  + VV+WT +I GY  +   +VA +LF+ M      P+ T  
Sbjct: 182 LCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVM------PEKTEV 235

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
           ++ S+L   + +G  +   E+F  M  K  +         M+   G  G++++A  + + 
Sbjct: 236 SWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIA-----CNAMIVGFGEVGEISKARRVFD- 289

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           ++ + D A W  ++ A +  K  EL  L     ++ + +   +  L+S
Sbjct: 290 LMEDRDNATWRGMIKAYE-RKGFELEALDLFAQMQKQGVRPSFPSLIS 336



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 119/260 (45%), Gaps = 27/260 (10%)

Query: 94  KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVG 153
           + G ++  RK FD +  K + +WN+++SGY  NGL     +L+ EM    V    V++ G
Sbjct: 29  RIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNV----VSWNG 84

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN----NALINMYARCGNLKKARAIFDGM 209
           ++S     G     + VE +   N F   P  N     A++  Y + G + +A ++F  M
Sbjct: 85  LVS-----GYIKNRMIVEAR---NVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRM 136

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
           P +  VSWT + GG    G  + A +L+D M       D  A  +++      G  D+  
Sbjct: 137 PERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVK----DVVASTNMIGGLCREGRVDEAR 192

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
             F  M+ +  +      +T M+    +  +++ A +L E M  E     W ++L    +
Sbjct: 193 LIFDEMRERNVVT-----WTTMITGYRQNNRVDVARKLFEVM-PEKTEVSWTSMLLGYTL 246

Query: 330 HKNVELAELAFGKVIKLEPM 349
              +E AE  F +V+ ++P+
Sbjct: 247 SGRIEDAE-EFFEVMPMKPV 265



 Score = 46.2 bits (108), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%)

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
           I+  +R G + +AR  FD +  K + SW +I+ GY  +G  + A QLFDEM +  +
Sbjct: 24  ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNV 79


>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
 gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
          Length = 785

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/510 (37%), Positives = 295/510 (57%), Gaps = 9/510 (1%)

Query: 13  VCYNALISGYVLNSLV------SEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLG 66
           V +N +I+G+     V      SEA++L+ +++ +G++    T   +L  C   GYL  G
Sbjct: 279 VMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFG 338

Query: 67  MCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQN 126
              H   +K+    D  +G+ L+ +Y   G ++ G + F   P+  ++TW AM+SG  QN
Sbjct: 339 KQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQN 398

Query: 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
            L    L L+ E    G+ PD  T   V+++CA L     G +++     +GF     + 
Sbjct: 399 ELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMG 458

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           N+ ++MYAR G++  A   F  M    VVSW+A+I  +  HG    A+  FDEM+ + + 
Sbjct: 459 NSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVV 518

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           P+   F+ VL+ACSH GL D+GL Y+  M   YGL P  +H TC+VDLLGRAG+L +A  
Sbjct: 519 PNEITFLGVLTACSHGGLVDEGLRYYETMTKDYGLSPTIKHCTCVVDLLGRAGRLADAEA 578

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366
            I + +   D  +W +LL +C+IH+++E  +L   ++++LEP ++  YV+L N+Y +A  
Sbjct: 579 FISNSIFHADPVIWRSLLASCRIHRDLERGQLVANRIMELEPTSSASYVILYNMYLDAGE 638

Query: 367 LDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE 426
           L    + R +M++R +KK+PG S++ELK  VH F+ GD++H ++  IY    KLE ++  
Sbjct: 639 LSLASKTRDLMKQRGVKKEPGLSWIELKCGVHSFVAGDKSHPESSAIY---TKLEEMLSR 695

Query: 427 HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
            +    +D + S+   N    HSEKLA+A G+I+      I VMKNLR+C DCH  +KL+
Sbjct: 696 IEKLATTDTEISKREQNLMNCHSEKLAVALGMIHLPQSAPIRVMKNLRVCRDCHSTMKLI 755

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SK  +R+ I+RD  RFHHF+ G CSC DYW
Sbjct: 756 SKSENREIILRDPIRFHHFRDGSCSCADYW 785



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 153/325 (47%), Gaps = 12/325 (3%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +N LI  Y    L   ++    + R  GV+++  +    L  C   G+L  G   H 
Sbjct: 74  AVSFNLLIDAYSREGLAPLSLETLARARRAGVDVDRFSYAAALAACSRAGHLRAGRAVHA 133

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + +  GL     V N L++MY KCG +   R++FD   E+  ++WN+++SGY + G    
Sbjct: 134 LAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREE 193

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGL--EVEQQIQANGFGSNPFLNNAL 189
           ++ ++  M+  G+  ++     V+  C+  G  ++ +   V   +   G  S+ FL +A+
Sbjct: 194 MVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAM 253

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGY-------GIHGHGEVAVQLFDEMLK 242
           I+MYA+ G L +A A+F  +    VV +  +I G+       G     E A+ L+ E+  
Sbjct: 254 IDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASE-ALTLYSEVQS 312

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
            G++P    F SVL AC+ AG  + G +  +G   KY  Q      + ++DL   +G + 
Sbjct: 313 RGMQPTEFTFSSVLRACNLAGYLEFG-KQIHGQVIKYTFQEDDFIGSALIDLYFNSGCME 371

Query: 303 EALELIESMLVEPDGAVWGALLGAC 327
           +      S   + D   W A++  C
Sbjct: 372 DGFRCFRSS-PKHDIVTWTAMVSGC 395



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 129/267 (48%), Gaps = 10/267 (3%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+  Y + G     R+L D++P +  +++N +I  Y++ GLA   LE     +  GV 
Sbjct: 47  NTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRAGVD 106

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
            D  ++   L++C+  G    G  V      +G  S  F++N+L++MY++CG + +AR +
Sbjct: 107 VDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRV 166

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           FD    +  VSW +++ GY   G  E  V++F  M + G+  +  A  SV+  CS  G  
Sbjct: 167 FDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDG 226

Query: 266 DKGL-EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
              + E  +G   K GL       + M+D+  + G L EA  L  S + EP+  ++  ++
Sbjct: 227 TMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRS-VQEPNVVMFNTMI 285

Query: 325 -GACKIHKNVELAELAFGKVIKLEPMN 350
            G C+        E   GK +  E + 
Sbjct: 286 AGFCR-------TETVIGKEVASEALT 305



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 111/221 (50%), Gaps = 4/221 (1%)

Query: 10  HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCC 69
           H  V + A++SG V N L  +A+SLF +    G++ +  T+  ++  C        G   
Sbjct: 383 HDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQI 442

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
            C   K G D    +GN  + MY + G VD   + F ++    +++W+A+IS +AQ+G A
Sbjct: 443 QCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCA 502

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN-- 187
              L  + EM    V P+ +TF+GVL++C+H G    GL   + +  + +G +P + +  
Sbjct: 503 RDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYYETMTKD-YGLSPTIKHCT 561

Query: 188 ALINMYARCGNLKKARA-IFDGMPRKTVVSWTAIIGGYGIH 227
            ++++  R G L  A A I + +     V W +++    IH
Sbjct: 562 CVVDLLGRAGRLADAEAFISNSIFHADPVIWRSLLASCRIH 602



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 2/141 (1%)

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
           FL N L+  Y R G    AR + D MPR+  VS+  +I  Y   G   ++++      ++
Sbjct: 44  FLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRA 103

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
           G+  D  ++ + L+ACS AG    G    + +    GL  G      +V +  + G++ E
Sbjct: 104 GVDVDRFSYAAALAACSRAGHLRAG-RAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGE 162

Query: 304 ALELIESMLVEPDGAVWGALL 324
           A  + + +  E D   W +L+
Sbjct: 163 ARRVFD-VAEERDDVSWNSLV 182


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/544 (37%), Positives = 303/544 (55%), Gaps = 28/544 (5%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNS-LVSEAVSLFGKMR-EQGVEINSVTMLCLLPICV 58
           VFD   +       +NA+I GY  +  +  EA+ LF +M  E G   +  TM  +LP C 
Sbjct: 318 VFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACA 377

Query: 59  DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
                      H   VK  +  +  V N LM MY + G +D    +F  +  + +++WN 
Sbjct: 378 RSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNT 437

Query: 119 MISGYAQNGLATHVLELYREMKSLGVC--------------------PDAVTFVGVLSSC 158
           +I+G    GL +   +L REM+                         P+ +T + +L  C
Sbjct: 438 LITGCIVQGLISEAFQLVREMQLPSSAASGETMLEGDDTSVDGQRCMPNNITLMTLLPGC 497

Query: 159 AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWT 218
           A L A + G E+      +   S+  + +AL++MYA+CG L  ARA+FD +PR+ V++W 
Sbjct: 498 AVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCLALARAVFDRLPRRNVITWN 557

Query: 219 AIIGGYGIHGHGEVAVQLFDEMLKSG-IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
            +I  YG+HG G+ A+ LFD M+ +G   P+   F++ L+ACSH+GL D+GLE F GMK 
Sbjct: 558 VLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMKR 617

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV-EPDGAVWGALLGACKIHKNVELA 336
            YG +P P  + C+VD+LGRAG+L+EA  +I SM   E   + W  +LGAC++H+NV+L 
Sbjct: 618 DYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVKLG 677

Query: 337 ELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGR 396
            +A  ++ +LEP    +YVLL NIYS A   +    VR MMR+R + K+PG S++EL G 
Sbjct: 678 RIAAERLFELEPDEASHYVLLCNIYSAAGLWENSTEVRGMMRQRGVAKEPGCSWIELDGA 737

Query: 397 VHLFMVGDRNHHQTVEIYRMLDKL-ENLVQE---HDGTKRSDQKNSEEHLNDTEVHSEKL 452
           +H FM G+  H ++ +++  +D L E + +E    D +      +  E       HSEKL
Sbjct: 738 IHRFMAGESAHPESAQVHAHMDALWERMRREGYVPDTSCVLHDVDEAEKAAMLRYHSEKL 797

Query: 453 AIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSC 512
           AIAFG++   PG  I V KNLR+C DCH   K +S++V R+ ++RD  RFHHF+ G CSC
Sbjct: 798 AIAFGLLRAPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFRDGTCSC 857

Query: 513 KDYW 516
            DYW
Sbjct: 858 GDYW 861



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 159/334 (47%), Gaps = 21/334 (6%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPIC---VDPGYLWLGMC 68
            V YN+LIS   L      A+     M     E++S T++ +L  C    D G+  LG  
Sbjct: 118 AVSYNSLISALCLFRRWGHALDALRDMLADH-EVSSFTLVSVLLACSHLADQGHR-LGRE 175

Query: 69  CHCICVKFGLDLD-----FSVGNCLMTMYVKCGSVDYGRKLF--DQVPEKGLITWNAMIS 121
            H   +K G  LD     F   N L++MY + G VD  ++LF         L+TWN MIS
Sbjct: 176 AHAFALKHGF-LDKGRERFPF-NALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMIS 233

Query: 122 GYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI-QANGFG 180
              Q G     +++  +M +LGV PD VTF   L +C+ L    VG EV   + + +   
Sbjct: 234 LLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLA 293

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIH-GHGEVAVQLF 237
           +N F+ +AL++MYA    +  AR +FD +P   + +  W A+I GY  H G  E A++LF
Sbjct: 294 ANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELF 353

Query: 238 DEM-LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
             M  ++G  P  T    VL AC+ + +   G E  +G   K  +         ++D+  
Sbjct: 354 SRMEAEAGCAPSETTMAGVLPACARSEVF-TGKEAVHGYVVKRDMASNRFVQNALMDMYA 412

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           R G+++EA   I +M+   D   W  L+  C + 
Sbjct: 413 RLGRMDEA-HTIFAMIDLRDIVSWNTLITGCIVQ 445



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 109/236 (46%), Gaps = 10/236 (4%)

Query: 83  SVGNCLMTMYVKCGSVDYGRKLFDQVPE--KGLITWNAMISGYAQNGLATHVLELYREMK 140
           +V N L+T Y +CG +D    LF   P   +  +++N++IS         H L+  R+M 
Sbjct: 86  AVSNALLTAYARCGDLDAALALFAATPPDLRDAVSYNSLISALCLFRRWGHALDALRDML 145

Query: 141 SLGVCPDAVTFVGVLSSCAHLG--AHSVGLEVEQQIQANGF---GSNPFLNNALINMYAR 195
           +      + T V VL +C+HL    H +G E       +GF   G   F  NAL++MYAR
Sbjct: 146 ADHEV-SSFTLVSVLLACSHLADQGHRLGREAHAFALKHGFLDKGRERFPFNALLSMYAR 204

Query: 196 CGNLKKARAIF--DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
            G +  A+ +F   G     +V+W  +I      G  E AVQ+  +M+  G+RPDG  F 
Sbjct: 205 LGLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFA 264

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
           S L ACS   L   G E    +     L       + +VD+     Q++ A  + +
Sbjct: 265 SALPACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFD 320



 Score = 45.1 bits (105), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 98/242 (40%), Gaps = 45/242 (18%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            P ++NAL+  YARCG+L  A A+F   P   +  VS+ ++I    +      A+    +
Sbjct: 84  TPAVSNALLTAYARCGDLDAALALFAATPPDLRDAVSYNSLISALCLFRRWGHALDALRD 143

Query: 240 MLKSGIRPDGTAFVSVLSACSHA------------------GLTDKGLEYF-----YGMK 276
           ML        T  VSVL ACSH                   G  DKG E F       M 
Sbjct: 144 MLADHEVSSFT-LVSVLLACSHLADQGHRLGREAHAFALKHGFLDKGRERFPFNALLSMY 202

Query: 277 NKYGLQPGPEH--------------YTCMVDLLGRAGQLNEALELIESML---VEPDGAV 319
            + GL    +               +  M+ LL + G+  EA++++  M+   V PDG  
Sbjct: 203 ARLGLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVT 262

Query: 320 WGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV--LLSNIYSEARNLDGIMRVRMMM 377
           + + L AC   + + +       V+K + +    +V   L ++Y+    +    RV  M+
Sbjct: 263 FASALPACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMV 322

Query: 378 RE 379
            E
Sbjct: 323 PE 324


>gi|326515658|dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 796

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/516 (37%), Positives = 305/516 (59%), Gaps = 15/516 (2%)

Query: 13  VCYNALISGY------VLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLG 66
           V +NA+I+G       V   ++ EA+SL+ +++ +G+E    T   ++  C   G +  G
Sbjct: 284 VVFNAMIAGLCRDEAAVGTDVLREALSLYSEVQSRGMEPTEFTFSSVIRACNLAGDIEFG 343

Query: 67  MCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQN 126
              H   +K     D  +G+ L+ +Y+  G ++ G + F  VP++ ++TW AMISG  QN
Sbjct: 344 KQIHGQVLKHCFQGDDFIGSALIDLYLNSGCMEDGFRCFTSVPKQDVVTWTAMISGCVQN 403

Query: 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
            L    L L+ E+   G+ PD  T   V+++CA L     G +++     +GFG    + 
Sbjct: 404 ELFERALTLFHELLGAGLKPDPFTISSVMNACASLAVARTGEQIQCFATKSGFGRFTAMG 463

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           N+ I+MYAR G++  A   F  M    +VSW+A+I  +  HG    A++ F+EM+ + + 
Sbjct: 464 NSCIHMYARSGDVHAAVRRFQEMESHDIVSWSAVISSHAQHGCARDALRFFNEMVDAKVV 523

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           P+   F+ VL+ACSH GL D+GL+Y+  MK +Y L P  +H TC+VDLLGRAG+L +A  
Sbjct: 524 PNEITFLGVLTACSHGGLVDEGLKYYETMKEEYALSPTIKHCTCVVDLLGRAGRLADAEA 583

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366
            I   +   +  +W +LL +C+IH+++E  +L   ++++L+P ++  YV L NIY +A  
Sbjct: 584 FIRDSIFHDEPVIWRSLLASCRIHRDMERGQLVADRIMELQPSSSASYVNLYNIYLDAGE 643

Query: 367 LDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY----RMLDKLEN 422
           L    ++R +M+ER +KK+PG S++EL+  VH F+ GD++H ++  IY     ML K++ 
Sbjct: 644 LSLASKIRDVMKERGVKKEPGLSWIELRSGVHSFVAGDKSHPESNAIYSKLAEMLSKIDK 703

Query: 423 LVQEHDGTKRSDQ--KNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCH 480
           L      + +SD   +N +  +N    HSEKLA+A G+I+      I VMKNLR+C DCH
Sbjct: 704 LTATDASSTKSDDTIRNEQSWMN---WHSEKLAVALGLIHLPQSAPIRVMKNLRVCRDCH 760

Query: 481 LFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           L +KL+SK   R+ ++RDA RFHHF+ G CSC DYW
Sbjct: 761 LTMKLISKSEKREIVLRDAIRFHHFRDGSCSCADYW 796



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 159/355 (44%), Gaps = 21/355 (5%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGYLWLGMCCH 70
            V +N LI  Y        ++  F + R   GV  +  T    L  C   G L  G   H
Sbjct: 78  AVSFNLLIDAYSRAGQPEASLETFARARRSAGVRADRFTYAAALAACSRAGRLREGKAVH 137

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
            + V  G+     V N L++MY +CG +   R++FD   E+  ++WNA++SGY + G   
Sbjct: 138 ALSVLEGIAGGVFVSNSLVSMYARCGDMGQARQVFDAADERDDVSWNALVSGYVRAGAQD 197

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA----NGFGSNPFLN 186
            +L ++  M+  G+  ++     V+  CA  G+    +++   +       GF S+ FL 
Sbjct: 198 DMLRVFAMMRRSGIGLNSFALGSVIKCCA--GSDDPVMDIAAAVHGCVVKAGFDSDVFLA 255

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV-------AVQLFDE 239
           +A++ MYA+ G L +A A+F  +    VV + A+I G        V       A+ L+ E
Sbjct: 256 SAMVGMYAKKGALSEAVALFKSVLDPNVVVFNAMIAGL-CRDEAAVGTDVLREALSLYSE 314

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           +   G+ P    F SV+ AC+ AG  + G +  +G   K+  Q      + ++DL   +G
Sbjct: 315 VQSRGMEPTEFTFSSVIRACNLAGDIEFG-KQIHGQVLKHCFQGDDFIGSALIDLYLNSG 373

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF----GKVIKLEPMN 350
            + +      S + + D   W A++  C  ++  E A   F    G  +K +P  
Sbjct: 374 CMEDGFRCFTS-VPKQDVVTWTAMISGCVQNELFERALTLFHELLGAGLKPDPFT 427



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 128/248 (51%), Gaps = 10/248 (4%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY-REMKSLGV 144
           N L+  Y + G   + R+L D++P    +++N +I  Y++ G     LE + R  +S GV
Sbjct: 53  NTLLAAYCRLGG--HARRLLDEMPRTNAVSFNLLIDAYSRAGQPEASLETFARARRSAGV 110

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARA 204
             D  T+   L++C+  G    G  V       G     F++N+L++MYARCG++ +AR 
Sbjct: 111 RADRFTYAAALAACSRAGRLREGKAVHALSVLEGIAGGVFVSNSLVSMYARCGDMGQARQ 170

Query: 205 IFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL 264
           +FD    +  VSW A++ GY   G  +  +++F  M +SGI  +  A  SV+  C  AG 
Sbjct: 171 VFDAADERDDVSWNALVSGYVRAGAQDDMLRVFAMMRRSGIGLNSFALGSVIKCC--AGS 228

Query: 265 TDKGLEY---FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWG 321
            D  ++     +G   K G        + MV +  + G L+EA+ L +S+L +P+  V+ 
Sbjct: 229 DDPVMDIAAAVHGCVVKAGFDSDVFLASAMVGMYAKKGALSEAVALFKSVL-DPNVVVFN 287

Query: 322 ALL-GACK 328
           A++ G C+
Sbjct: 288 AMIAGLCR 295


>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Cucumis sativus]
          Length = 602

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/508 (38%), Positives = 292/508 (57%), Gaps = 6/508 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           YNA++  Y L+    E + ++  M  QGV  + ++    +  C+    L  G+  H    
Sbjct: 95  YNAMLRAYSLSRSPLEGLYMYRDMERQGVRADPLSSSFAVKSCIKLLSLLFGIQIHARIF 154

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             G   D  +   +M +Y  CG  +   KLFD+VP+K ++ WN +IS   +N      L 
Sbjct: 155 INGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLISCLTRNKRTRDALG 214

Query: 135 LYREMKSLG-VC-PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+  M+S   +C PD VT + +L +CA L A   G  +   IQ +G+ +   L N+LI+M
Sbjct: 215 LFEIMQSPTYLCQPDKVTCLLLLQACADLNALEFGERIHGYIQQHGYNTESNLCNSLISM 274

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y+RCG + KA  +FD M  K VVSW+A+I G  ++GHG  A++ F EM K+G+ P    F
Sbjct: 275 YSRCGRMDKAYEVFDKMTEKNVVSWSAMISGLSMNGHGREAIEAFWEMQKNGVEPGDHTF 334

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            +VLSACSH GL D+G+ +F  M+ ++ + P   HY C+VDLLGRAG L++A ELI SM 
Sbjct: 335 TAVLSACSHCGLVDEGMAFFDRMRQEFMIAPNVHHYGCIVDLLGRAGMLDQAYELIMSME 394

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           V PD  +W  LLGAC+IH +  L E     +I+L+    G YVLL NIYS A N D +  
Sbjct: 395 VRPDATMWRTLLGACRIHGHGNLGERIVEHLIELKSQEAGDYVLLLNIYSSAGNWDKVTE 454

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ----EHD 428
           +R +M+E+ +   P  + +EL G VH F V D +H    +IY+ LD++   ++    E +
Sbjct: 455 LRKLMKEKGIYTTPCCTTIELNGVVHQFAVDDISHPMKDKIYKQLDEINKQLKIAGYEAE 514

Query: 429 GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
            +    +   ++       HSEKLAIAFG++ T PG  I +  N+R C DCH F K +S 
Sbjct: 515 MSSELHRLEPKDKGYALSNHSEKLAIAFGVLATPPGRTIRIANNIRTCMDCHNFAKYISS 574

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           + +R+ +VRD +RFHHF+ G CSC D+W
Sbjct: 575 VYNRKVVVRDRSRFHHFQEGRCSCNDFW 602



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 141/289 (48%), Gaps = 8/289 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQG--VEINSVTMLCLLPICV 58
           +FDE  +     V +N LIS    N    +A+ LF  M+      + + VT L LL  C 
Sbjct: 184 LFDEVPQKD--VVAWNVLISCLTRNKRTRDALGLFEIMQSPTYLCQPDKVTCLLLLQACA 241

Query: 59  DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
           D   L  G   H    + G + + ++ N L++MY +CG +D   ++FD++ EK +++W+A
Sbjct: 242 DLNALEFGERIHGYIQQHGYNTESNLCNSLISMYSRCGRMDKAYEVFDKMTEKNVVSWSA 301

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLE-VEQQIQAN 177
           MISG + NG     +E + EM+  GV P   TF  VLS+C+H G    G+   ++  Q  
Sbjct: 302 MISGLSMNGHGREAIEAFWEMQKNGVEPGDHTFTAVLSACSHCGLVDEGMAFFDRMRQEF 361

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQL 236
               N      ++++  R G L +A  +   M  R     W  ++G   IHGHG +  ++
Sbjct: 362 MIAPNVHHYGCIVDLLGRAGMLDQAYELIMSMEVRPDATMWRTLLGACRIHGHGNLGERI 421

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
            + +++   +  G  +V +L+  S AG  DK  E    MK K G+   P
Sbjct: 422 VEHLIELKSQEAGD-YVLLLNIYSSAGNWDKVTELRKLMKEK-GIYTTP 468



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 133/264 (50%), Gaps = 8/264 (3%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           Y R+LFD +    +  +NAM+  Y+ +      L +YR+M+  GV  D ++    + SC 
Sbjct: 79  YSRRLFDLLTNPFVSHYNAMLRAYSLSRSPLEGLYMYRDMERQGVRADPLSSSFAVKSCI 138

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
            L +   G+++  +I  NG  ++  L  +++++Y+ CG  ++A  +FD +P+K VV+W  
Sbjct: 139 KLLSLLFGIQIHARIFINGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNV 198

Query: 220 IIGGYGIHGHGEVAVQLFDEMLKSGI---RPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
           +I     +     A+ LF E+++S     +PD    + +L AC+     + G E  +G  
Sbjct: 199 LISCLTRNKRTRDALGLF-EIMQSPTYLCQPDKVTCLLLLQACADLNALEFG-ERIHGYI 256

Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELA 336
            ++G          ++ +  R G++++A E+ + M  E +   W A++    ++ +   A
Sbjct: 257 QQHGYNTESNLCNSLISMYSRCGRMDKAYEVFDKM-TEKNVVSWSAMISGLSMNGHGREA 315

Query: 337 ELAFGKVIK--LEPMNTGYYVLLS 358
             AF ++ K  +EP +  +  +LS
Sbjct: 316 IEAFWEMQKNGVEPGDHTFTAVLS 339


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/548 (37%), Positives = 307/548 (56%), Gaps = 49/548 (8%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N ++SG+  +    EAV +F K+   G   + VT+  +LP   D   L +G   H  
Sbjct: 218 VSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGY 277

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSV-------------------------------DYG 101
            +K GL  D  V + ++ MY K G V                               D  
Sbjct: 278 VIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKA 337

Query: 102 RKLFD----QVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
            ++F+    Q  E  +++W ++I+G AQNG     LEL+REM+  GV P+ VT   +L +
Sbjct: 338 LEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPA 397

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
           C ++ A   G              N  + +ALI+MYA+CG +  ++ +F+ MP K +V W
Sbjct: 398 CGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCW 457

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
            +++ G+ +HG  +  + +F+ ++++ ++PD  +F S+LSAC   GLTD+G +YF  M  
Sbjct: 458 NSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSE 517

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
           +YG++P  EHY+CMV+LLGRAG+L EA +LI+ M  EPD  VWGALL +C++  NV+LAE
Sbjct: 518 EYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAE 577

Query: 338 LAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRV 397
           +A  K+  LEP N G YVLLSNIY+       +  +R  M    LKK+PG S++++K RV
Sbjct: 578 IAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRV 637

Query: 398 HLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEV---------H 448
           +  + GD++H Q  +I   +D++   ++     K   + N +  L+D E          H
Sbjct: 638 YTLLAGDKSHPQIDQITEKMDEISKEMR-----KSGHRPNLDFALHDVEEQEQEQMLWGH 692

Query: 449 SEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSG 508
           SEKLA+ FG++NT  GT + V+KNLRICGDCH  IK +S    R+  +RD  RFHHFK G
Sbjct: 693 SEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDG 752

Query: 509 FCSCKDYW 516
            CSC D+W
Sbjct: 753 ICSCGDFW 760



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/441 (22%), Positives = 189/441 (42%), Gaps = 74/441 (16%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +++LI       L ++++ +F +M   G+  +S  +  L  +C +     +G   HC+  
Sbjct: 84  FSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSC 143

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             GLD+D  V   +  MY++CG +   RK+FD++ +K ++T +A++  YA+ G    V+ 
Sbjct: 144 VSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVR 203

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF--------------G 180
           +  EM+S G+  + V++ G+LS     G H   + + Q+I   GF              G
Sbjct: 204 ILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVG 263

Query: 181 SNPFLN---------------------NALINMYARCGN--------------------- 198
            +  LN                     +A+I+MY + G+                     
Sbjct: 264 DSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNA 323

Query: 199 ----------LKKARAIFDGMPRKT----VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
                     + KA  +F+    +T    VVSWT+II G   +G    A++LF EM  +G
Sbjct: 324 YITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAG 383

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
           ++P+     S+L AC +      G    +G   +  L       + ++D+  + G++N +
Sbjct: 384 VKPNHVTIPSMLPACGNIAALGHG-RSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLS 442

Query: 305 LELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI--KLEPMNTGYYVLLSNIYS 362
            +++ +M+   +   W +L+    +H   +     F  ++  +L+P    +  LLS    
Sbjct: 443 -QIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQ 501

Query: 363 EARNLDGIMRVRMMMRERRLK 383
                +G    +MM  E  +K
Sbjct: 502 VGLTDEGWKYFKMMSEEYGIK 522



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 106/233 (45%), Gaps = 1/233 (0%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   +K G   D  +   L+  Y      +    +   +P+  + +++++I    +  L 
Sbjct: 38  HARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLF 97

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
           T  + ++  M S G+ PD+     +   CA L A  VG ++      +G   + F+  ++
Sbjct: 98  TQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSM 157

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
            +MY RCG +  AR +FD M  K VV+ +A++  Y   G  E  V++  EM  SGI  + 
Sbjct: 158 FHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANI 217

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
            ++  +LS  + +G   + +  F  + +  G  P     + ++  +G +  LN
Sbjct: 218 VSWNGILSGFNRSGYHKEAVVMFQKI-HHLGFCPDQVTVSSVLPSVGDSEMLN 269


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/509 (38%), Positives = 296/509 (58%), Gaps = 5/509 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPG-YLWLGMCCHC 71
           V +NALI GY  +    +A++ F  MR +GV  N +T++ +L  C+ PG  L  G   H 
Sbjct: 429 VAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHA 488

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             V  G + D  V N L+TMY KCG +   + LF+ +  + +ITWNAM++  A +G    
Sbjct: 489 YIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEE 548

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
           VL+L  +M+S GV  D  +F   LS+ A L     G ++       GF  + F+ NA  +
Sbjct: 549 VLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAAD 608

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY++CG + +   +      +++ SW  +I   G HG+ E     F EML+ GI+P    
Sbjct: 609 MYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVT 668

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           FVS+L+ACSH GL DKGL Y+  +   +GL+P  EH  C++DLLGR+G+L EA   I  M
Sbjct: 669 FVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKM 728

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            ++P+  VW +LL +CKIH N++    A   + KLEP +   YVL SN+++     + + 
Sbjct: 729 PMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVE 788

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH---- 427
            VR  M  + +KK    S+V+LK +V  F +GDR H QT+EIY  L+ ++ L++E     
Sbjct: 789 NVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVA 848

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           D ++     + E+  ++   HSE+LA+A+ +++T  G+ + + KNLRIC DCH   K VS
Sbjct: 849 DTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVS 908

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +++ R+ ++RD  RFHHF+ G CSCKDYW
Sbjct: 909 RVIGRRIVLRDQYRFHHFERGLCSCKDYW 937



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 156/335 (46%), Gaps = 5/335 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD+   S   T+ +N++ + Y  N  + E+  +F  MR    E+NS T+  LL +    
Sbjct: 217 IFDQ--MSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHV 274

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
            +   G   H + VK G D    V N L+ MY   G       +F Q+P K LI+WN+++
Sbjct: 275 DHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLM 334

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           + +  +G +   L L   M S G   + VTF   L++C        G  +   +  +G  
Sbjct: 335 ASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLF 394

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            N  + NAL++MY + G + ++R +   MPR+ VV+W A+IGGY      + A+  F  M
Sbjct: 395 YNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTM 454

Query: 241 LKSGIRPDGTAFVSVLSACSHAG-LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
              G+  +    VSVLSAC   G L ++G +  +      G +        ++ +  + G
Sbjct: 455 RVEGVSSNYITVVSVLSACLLPGDLLERG-KPLHAYIVSAGFESDEHVKNSLITMYAKCG 513

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVE 334
            L+ + +L    L   +   W A+L A   H + E
Sbjct: 514 DLSSSQDLFNG-LDNRNIITWNAMLAANAHHGHGE 547



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 162/346 (46%), Gaps = 3/346 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + +L+ GY       E + ++  MR +GV  N  +M  ++  C       LG      
Sbjct: 126 VSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQ 185

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK GL+   +V N L++M    G+VDY   +FDQ+ E+  I+WN++ + YAQNG     
Sbjct: 186 VVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEES 245

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
             ++  M+      ++ T   +LS   H+     G  +   +   GF S   + N L+ M
Sbjct: 246 FRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRM 305

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA  G   +A  +F  MP K ++SW +++  +   G    A+ L   M+ SG   +   F
Sbjct: 306 YAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTF 365

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S L+AC      +KG    +G+    GL         +V + G+ G+++E+  ++  M 
Sbjct: 366 TSALAACFTPDFFEKG-RILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQM- 423

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
              D   W AL+G     ++ + A  AF + +++E +++ Y  ++S
Sbjct: 424 PRRDVVAWNALIGGYAEDEDPDKALAAF-QTMRVEGVSSNYITVVS 468



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 155/319 (48%), Gaps = 11/319 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWL-GMCCHC 71
           V +N ++SG V   L  E +  F KM + G++ +S  +  L+  C   G ++  G+  H 
Sbjct: 24  VSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHG 83

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              K GL  D  V   ++ +Y   G V   RK+F+++P++ +++W +++ GY+  G    
Sbjct: 84  FVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEE 143

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
           V+++Y+ M+  GV  +  +   V+SSC  L   S+G ++  Q+  +G  S   + N+LI+
Sbjct: 144 VIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLIS 203

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           M    GN+  A  IFD M  +  +SW +I   Y  +GH E + ++F  M +     + T 
Sbjct: 204 MLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTT 263

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR----AGQLNEALEL 307
             ++LS   H      G    +G+  K G     +   C+ + L R    AG+  EA  L
Sbjct: 264 VSTLLSVLGHVDHQKWG-RGIHGLVVKMGF----DSVVCVCNTLLRMYAGAGRSVEA-NL 317

Query: 308 IESMLVEPDGAVWGALLGA 326
           +   +   D   W +L+ +
Sbjct: 318 VFKQMPTKDLISWNSLMAS 336



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 125/246 (50%), Gaps = 5/246 (2%)

Query: 91  MYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVT 150
           MY K G V   R LFD +P +  ++WN M+SG  + GL    +E +R+M  LG+ P +  
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 151 FVGVLSSCAHLGA-HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
              ++++C   G+    G++V   +  +G  S+ +++ A++++Y   G +  +R +F+ M
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
           P + VVSWT+++ GY   G  E  + ++  M   G+  +  +   V+S+C    L D+ L
Sbjct: 121 PDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGL--LKDESL 178

Query: 270 -EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACK 328
                G   K GL+        ++ +LG  G ++ A  + + M  E D   W ++  A  
Sbjct: 179 GRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQM-SERDTISWNSIAAAYA 237

Query: 329 IHKNVE 334
            + ++E
Sbjct: 238 QNGHIE 243


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/526 (38%), Positives = 299/526 (56%), Gaps = 15/526 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVT---MLCLLPIC 57
           +FDES      T  +N +ISG + +   ++A+S   +M + GV  N  T      L  + 
Sbjct: 200 LFDES--PLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTAFVLAGML 257

Query: 58  VDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQ---VPEKGLI 114
           + P    LG   H   +   L+ D  V + LM MY KCG ++    +FD    +      
Sbjct: 258 LLPD---LGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNF 314

Query: 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
            W+ M++GY QNG     L+L+R M   GV  D  T   V ++CA++G    G +V   +
Sbjct: 315 AWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCV 374

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
           +   +  +  L +A+++MYA+CGNL+ AR+IFD    K +  WT+++  Y  HG G +A+
Sbjct: 375 EKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAI 434

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
           +LF+ M    + P+    V VLSACSH GL  +G  YF  M+ +YG+ P  EHY C+VDL
Sbjct: 435 ELFERMTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDL 494

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
            GR+G L++A   IE   +  +  VW  LL AC++H++ E A+LA  K+++LE  + G Y
Sbjct: 495 YGRSGLLDKAKNFIEENNINHEAIVWKTLLSACRLHQHNEYAKLASEKLVQLEQCDAGSY 554

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
           V+LSNIY+          +R+ M+ER+++K PG S++ LK  VH F+ GD +H Q+ EIY
Sbjct: 555 VMLSNIYATNNKWHDTFELRVSMQERKVRKQPGRSWIHLKNTVHTFVAGDASHPQSAEIY 614

Query: 415 RMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVM 470
             L+KL   ++E   T R+D        E+     + HSEKLAIAFGII+T  GT + + 
Sbjct: 615 AYLEKLVERLKEIGYTSRTDLVVHDVEDEQRETALKFHSEKLAIAFGIISTPSGTPLRIF 674

Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KNLR+C DCH  IK +S    R+ +VRD  RFHHFK   CSC+D+W
Sbjct: 675 KNLRVCEDCHEAIKYISLATGREIVVRDLYRFHHFKDASCSCEDFW 720



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 167/385 (43%), Gaps = 41/385 (10%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVD 59
           VFDE  + T     +   ISG       ++ +  F +M  +G    N+  +  ++  C  
Sbjct: 67  VFDE--RPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCAG 124

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRK---------------- 103
            G +  G   H   ++ G+ LD  + N ++ MY KCG  +  R+                
Sbjct: 125 MGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIA 184

Query: 104 ---------------LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDA 148
                          LFD+ P +   +WN +ISG  ++G A   L   R M   GV  + 
Sbjct: 185 IGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNH 244

Query: 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD- 207
            T+         L    +G ++  ++       + F+ ++L++MY +CG L+ A ++FD 
Sbjct: 245 YTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDH 304

Query: 208 --GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
              + R    +W+ ++ GY  +G  E A+ LF  ML+ G+  D     SV +AC++ G+ 
Sbjct: 305 WSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMV 364

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           ++G +  +G   K   +      + +VD+  + G L +A  + +    + + AVW ++L 
Sbjct: 365 EQGRQ-VHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTK-NIAVWTSMLC 422

Query: 326 ACKIHKNVELAELAFGKVI--KLEP 348
           +   H    +A   F ++   K+ P
Sbjct: 423 SYASHGQGRIAIELFERMTAEKMTP 447



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 5/189 (2%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG-VCP 146
           ++  +V+       R +FD+ P +    W   ISG A+ G     +  + EM + G   P
Sbjct: 51  VLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATP 110

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF 206
           +A     V+  CA +G    G  V   +  NG   +  L NA+++MYA+CG  ++AR +F
Sbjct: 111 NAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVF 170

Query: 207 DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD 266
             M  +  VSW   IG     G    ++QLFDE   S +R D T++ +++S    +G   
Sbjct: 171 GAMAERDAVSWNIAIGACIQSGDILGSMQLFDE---SPLR-DTTSWNTIISGLMRSGHAA 226

Query: 267 KGLEYFYGM 275
             L +   M
Sbjct: 227 DALSHLRRM 235



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 78/197 (39%), Gaps = 9/197 (4%)

Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
           P    +++  + R      AR +FD  P +T   WT  I G    G     ++ F EML 
Sbjct: 45  PHERASVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLA 104

Query: 243 SG-IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301
            G   P+     +V+  C+  G  + G +  +G   + G+         ++D+  + GQ 
Sbjct: 105 EGEATPNAFVLAAVVRCCAGMGDVESG-KRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQF 163

Query: 302 NEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPM--NTGYYVLLSN 359
             A  +  +M  E D   W   +GAC    ++    L   ++    P+   T +  ++S 
Sbjct: 164 ERARRVFGAM-AERDAVSWNIAIGACIQSGDI----LGSMQLFDESPLRDTTSWNTIISG 218

Query: 360 IYSEARNLDGIMRVRMM 376
           +       D +  +R M
Sbjct: 219 LMRSGHAADALSHLRRM 235


>gi|30688521|ref|NP_850342.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|18491267|gb|AAL69458.1| At2g41080/T3K9.15 [Arabidopsis thaliana]
 gi|330254831|gb|AEC09925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 565

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/522 (38%), Positives = 307/522 (58%), Gaps = 9/522 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE +    LT  +NA+I+G +      E +SLF +M   G   +  T+  +       
Sbjct: 47  VFDE-MPDRKLTT-WNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGL 104

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             + +G   H   +K+GL+LD  V + L  MY++ G +  G  +   +P + L+ WN +I
Sbjct: 105 RSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLI 164

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            G AQNG    VL LY+ MK  G  P+ +TFV VLSSC+ L     G ++  +    G  
Sbjct: 165 MGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGAS 224

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S   + ++LI+MY++CG L  A   F     +  V W+++I  YG HG G+ A++LF+ M
Sbjct: 225 SVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTM 284

Query: 241 L-KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
             ++ +  +  AF+++L ACSH+GL DKGLE F  M  KYG +PG +HYTC+VDLLGRAG
Sbjct: 285 AEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAG 344

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
            L++A  +I SM ++ D  +W  LL AC IHKN E+A+  F ++++++P ++  YVLL+N
Sbjct: 345 CLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLAN 404

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
           +++ A+    +  VR  MR++ +KK+ G S+ E KG VH F +GDR+  ++ EIY  L +
Sbjct: 405 VHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKE 464

Query: 420 LENLVQEHDGTKRSDQK-----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLR 474
           L  L  +  G K          + EE  +D   HSEKLA+AF ++    G  I ++KNLR
Sbjct: 465 L-TLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLR 523

Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +C DCH+  K +S I +R+  +RD +RFHHF +G CSC DYW
Sbjct: 524 VCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 565



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 135/282 (47%), Gaps = 2/282 (0%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140
           ++   N L+  YV+ G +   RK+FD++P++ L TWNAMI+G  Q       L L+REM 
Sbjct: 24  NYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMH 83

Query: 141 SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
            LG  PD  T   V S  A L + S+G ++       G   +  +N++L +MY R G L+
Sbjct: 84  GLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQ 143

Query: 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
               +   MP + +V+W  +I G   +G  E  + L+  M  SG RP+   FV+VLS+CS
Sbjct: 144 DGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCS 203

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320
              +  +G +  +    K G        + ++ +  + G L +A +   S   + D  +W
Sbjct: 204 DLAIRGQG-QQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAF-SEREDEDEVMW 261

Query: 321 GALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362
            +++ A   H   + A   F  + +   M       L+ +Y+
Sbjct: 262 SSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYA 303



 Score = 45.1 bits (105), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 35/167 (20%)

Query: 190 INMYARCG-------------------------------NLKKARAIFDGMPRKTVVSWT 218
           ++MY++ G                               +L  AR +FD MP + + +W 
Sbjct: 1   MSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWN 60

Query: 219 AIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL-EYFYGMKN 277
           A+I G       E  + LF EM   G  PD     SV S    AGL    + +  +G   
Sbjct: 61  AMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGS--AGLRSVSIGQQIHGYTI 118

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
           KYGL+      + +  +  R G+L +   +I SM V  +   W  L+
Sbjct: 119 KYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVR-NLVAWNTLI 164


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/511 (37%), Positives = 293/511 (57%), Gaps = 15/511 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +  +IS Y    +  +A+ L   M    V  N  T   +L  C     + +    HC 
Sbjct: 128 ISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM---LHCG 184

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K GL+ D  V + L+ ++ K G  +    +FD++     I WN++I G+AQN  +   
Sbjct: 185 IIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVA 244

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           LEL++ MK  G   +  T   VL +C  L    +G++    I    +  +  LNNAL++M
Sbjct: 245 LELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDM 302

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CG+L+ A  +F+ M  + V++W+ +I G   +G+ + A++LF+ M  SG +P+    
Sbjct: 303 YCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITI 362

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           V VL ACSHAGL + G  YF  MK  YG+ P  EHY CM+DLLG+AG+L++A++L+  M 
Sbjct: 363 VGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEME 422

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            EPD   W  LLGAC++ +N+ LAE A  KVI L+P + G Y LLSNIY+ ++  D +  
Sbjct: 423 CEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEE 482

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           +R  MR+R +KK+PG S++E+  ++H F++GD +H Q VE+ +   KL  L+    G   
Sbjct: 483 IRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSK---KLNQLIHRLTGIGY 539

Query: 433 SDQKN-------SEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
             + N        E+  +    HSEKLA+AFG++       I + KNLRICGDCH+F KL
Sbjct: 540 VPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKL 599

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            SK+  R  ++RD  R+HHF+ G CSC DYW
Sbjct: 600 ASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 123/241 (51%), Gaps = 9/241 (3%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+ MYVK   ++   +LFDQ+P++ +I+W  MIS Y++  +    LEL   M    V 
Sbjct: 100 NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVR 159

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P+  T+  VL SC   G   V + +   I   G  S+ F+ +ALI+++A+ G  + A ++
Sbjct: 160 PNVYTYSSVLRSCN--GMSDVRM-LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSV 216

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           FD M     + W +IIGG+  +   +VA++LF  M ++G   +     SVL AC+   L 
Sbjct: 217 FDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALL 276

Query: 266 DKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
           + G++ + + +K    L         +VD+  + G L +AL +   M  E D   W  ++
Sbjct: 277 ELGMQAHVHIVKYDQDLILN----NALVDMYCKCGSLEDALRVFNQM-KERDVITWSTMI 331

Query: 325 G 325
            
Sbjct: 332 S 332



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 107/216 (49%), Gaps = 11/216 (5%)

Query: 134 ELYREMKSL------GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
           +L R MK++      G+  D+ T+  ++  C    A   G  + + +  NG     FL N
Sbjct: 41  DLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVN 100

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
            LINMY +   L  A  +FD MP++ V+SWT +I  Y      + A++L   ML+  +RP
Sbjct: 101 VLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRP 160

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           +   + SVL +C+  G++D  +   +    K GL+      + ++D+  + G+  +AL +
Sbjct: 161 NVYTYSSVLRSCN--GMSD--VRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSV 216

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
            + M V  D  VW +++G    +   ++A   F ++
Sbjct: 217 FDEM-VTGDAIVWNSIIGGFAQNSRSDVALELFKRM 251


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/522 (38%), Positives = 307/522 (58%), Gaps = 9/522 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE +    LT  +NA+I+G +      E +SLF +M   G   +  T+  +       
Sbjct: 132 VFDE-MPDRKLTT-WNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGL 189

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             + +G   H   +K+GL+LD  V + L  MY++ G +  G  +   +P + L+ WN +I
Sbjct: 190 RSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLI 249

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            G AQNG    VL LY+ MK  G  P+ +TFV VLSSC+ L     G ++  +    G  
Sbjct: 250 MGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGAS 309

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S   + ++LI+MY++CG L  A   F     +  V W+++I  YG HG G+ A++LF+ M
Sbjct: 310 SVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTM 369

Query: 241 L-KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
             ++ +  +  AF+++L ACSH+GL DKGLE F  M  KYG +PG +HYTC+VDLLGRAG
Sbjct: 370 AEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAG 429

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
            L++A  +I SM ++ D  +W  LL AC IHKN E+A+  F ++++++P ++  YVLL+N
Sbjct: 430 CLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLAN 489

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
           +++ A+    +  VR  MR++ +KK+ G S+ E KG VH F +GDR+  ++ EIY  L +
Sbjct: 490 VHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKE 549

Query: 420 LENLVQEHDGTKRSDQK-----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLR 474
           L  L  +  G K          + EE  +D   HSEKLA+AF ++    G  I ++KNLR
Sbjct: 550 L-TLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLR 608

Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +C DCH+  K +S I +R+  +RD +RFHHF +G CSC DYW
Sbjct: 609 VCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 650



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 135/282 (47%), Gaps = 2/282 (0%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140
           ++   N L+  YV+ G +   RK+FD++P++ L TWNAMI+G  Q       L L+REM 
Sbjct: 109 NYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMH 168

Query: 141 SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
            LG  PD  T   V S  A L + S+G ++       G   +  +N++L +MY R G L+
Sbjct: 169 GLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQ 228

Query: 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
               +   MP + +V+W  +I G   +G  E  + L+  M  SG RP+   FV+VLS+CS
Sbjct: 229 DGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCS 288

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320
              +  +G +  +    K G        + ++ +  + G L +A +   S   + D  +W
Sbjct: 289 DLAIRGQG-QQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAF-SEREDEDEVMW 346

Query: 321 GALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362
            +++ A   H   + A   F  + +   M       L+ +Y+
Sbjct: 347 SSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYA 388



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 86/215 (40%), Gaps = 35/215 (16%)

Query: 142 LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA------- 194
           L +  +   F   + SC    +   G ++   +  +GF S+ F+ N L++MY+       
Sbjct: 38  LNIFTNTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPS 97

Query: 195 ------------------------RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHG 230
                                   R G+L  AR +FD MP + + +W A+I G       
Sbjct: 98  AVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFN 157

Query: 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL-EYFYGMKNKYGLQPGPEHYT 289
           E  + LF EM   G  PD     SV S    AGL    + +  +G   KYGL+      +
Sbjct: 158 EEGLSLFREMHGLGFSPDEYTLGSVFSGS--AGLRSVSIGQQIHGYTIKYGLELDLVVNS 215

Query: 290 CMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
            +  +  R G+L +   +I SM V  +   W  L+
Sbjct: 216 SLAHMYMRNGKLQDGEIVIRSMPVR-NLVAWNTLI 249


>gi|3402709|gb|AAD12003.1| hypothetical protein [Arabidopsis thaliana]
          Length = 563

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/522 (38%), Positives = 307/522 (58%), Gaps = 9/522 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE +    LT  +NA+I+G +      E +SLF +M   G   +  T+  +       
Sbjct: 45  VFDE-MPDRKLTT-WNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGL 102

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             + +G   H   +K+GL+LD  V + L  MY++ G +  G  +   +P + L+ WN +I
Sbjct: 103 RSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLI 162

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            G AQNG    VL LY+ MK  G  P+ +TFV VLSSC+ L     G ++  +    G  
Sbjct: 163 MGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGAS 222

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S   + ++LI+MY++CG L  A   F     +  V W+++I  YG HG G+ A++LF+ M
Sbjct: 223 SVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTM 282

Query: 241 L-KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
             ++ +  +  AF+++L ACSH+GL DKGLE F  M  KYG +PG +HYTC+VDLLGRAG
Sbjct: 283 AEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAG 342

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
            L++A  +I SM ++ D  +W  LL AC IHKN E+A+  F ++++++P ++  YVLL+N
Sbjct: 343 CLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLAN 402

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
           +++ A+    +  VR  MR++ +KK+ G S+ E KG VH F +GDR+  ++ EIY  L +
Sbjct: 403 VHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKE 462

Query: 420 LENLVQEHDGTKRSDQK-----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLR 474
           L  L  +  G K          + EE  +D   HSEKLA+AF ++    G  I ++KNLR
Sbjct: 463 L-TLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLR 521

Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +C DCH+  K +S I +R+  +RD +RFHHF +G CSC DYW
Sbjct: 522 VCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 563



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 135/282 (47%), Gaps = 2/282 (0%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140
           ++   N L+  YV+ G +   RK+FD++P++ L TWNAMI+G  Q       L L+REM 
Sbjct: 22  NYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMH 81

Query: 141 SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
            LG  PD  T   V S  A L + S+G ++       G   +  +N++L +MY R G L+
Sbjct: 82  GLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQ 141

Query: 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
               +   MP + +V+W  +I G   +G  E  + L+  M  SG RP+   FV+VLS+CS
Sbjct: 142 DGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCS 201

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320
              +  +G +  +    K G        + ++ +  + G L +A +   S   + D  +W
Sbjct: 202 DLAIRGQG-QQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAF-SEREDEDEVMW 259

Query: 321 GALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362
            +++ A   H   + A   F  + +   M       L+ +Y+
Sbjct: 260 SSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYA 301



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 63/165 (38%), Gaps = 35/165 (21%)

Query: 192 MYARCG-------------------------------NLKKARAIFDGMPRKTVVSWTAI 220
           MY++ G                               +L  AR +FD MP + + +W A+
Sbjct: 1   MYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAM 60

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL-EYFYGMKNKY 279
           I G       E  + LF EM   G  PD     SV S    AGL    + +  +G   KY
Sbjct: 61  IAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGS--AGLRSVSIGQQIHGYTIKY 118

Query: 280 GLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
           GL+      + +  +  R G+L +   +I SM V  +   W  L+
Sbjct: 119 GLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVR-NLVAWNTLI 162


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/517 (38%), Positives = 305/517 (58%), Gaps = 6/517 (1%)

Query: 5   SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLW 64
           SI+S  +   +NALI GY  +S    ++  + +M+  G+  +  T+  LL  C     L 
Sbjct: 453 SIRSKTVN-SWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLK 511

Query: 65  LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYA 124
           LG   H + ++  L+ D  V   L+++Y+ CG +     LFD + +K L++WN M++GY 
Sbjct: 512 LGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYL 571

Query: 125 QNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF 184
           QNG     L L+R+M   GV P  ++ + V  +C+ L +  +G E            N F
Sbjct: 572 QNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAF 631

Query: 185 LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
           +  ++I+MYA+ G++ ++  +F+G+  ++V SW A++ GYGIHG  + A++LF+EM ++G
Sbjct: 632 IACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTG 691

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
             PD   F+ VL+AC+H+GL  +GL Y   MK  +G+ P  +HY C++D+L RAG+L+EA
Sbjct: 692 HCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEA 751

Query: 305 LEL-IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE 363
           L++  E M  EP   +W  LL +C+IHKN+E+ E    K+   EP     YVLLSN+Y+ 
Sbjct: 752 LKIATEEMSEEPGVGIWNFLLSSCRIHKNLEMGEKIAAKLFVSEPEKPENYVLLSNLYAG 811

Query: 364 ARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENL 423
           +   D + +VR  M+E  L+KD G S++EL G+V  F+ G+ +     EI  +   LE  
Sbjct: 812 SGKWDEVRKVRQRMKEMSLRKDAGCSWIELNGKVFSFVAGESSLDGFEEIKSLWSVLERE 871

Query: 424 VQE----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDC 479
           + +     D +      + EE       HSEKLAI +G+I TS GT + V KNLRIC DC
Sbjct: 872 IGKMGYRPDTSSVQHDLSEEEKTEQLRGHSEKLAITYGLIRTSEGTTLRVYKNLRICVDC 931

Query: 480 HLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           H   KL+SK+++R+ +VRD  RFHHFK+GFCSC DYW
Sbjct: 932 HNAAKLISKVMEREIVVRDNKRFHHFKNGFCSCGDYW 968



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 160/325 (49%), Gaps = 13/325 (4%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEI--NSVTMLCLLPICVDPGYLWLGMCCH 70
           V +N ++ G+     + +   L  +M   G ++  + VT+L  +P+C +   L      H
Sbjct: 356 VSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLKELH 415

Query: 71  CICVKFGLDLDFS-----VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
           C    + L  +F      V N  +  Y KCGS+ Y  ++F  +  K + +WNA+I GY+Q
Sbjct: 416 C----YSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQ 471

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
           +      L+ Y +MKS G+ PD  T   +LS+C+ + +  +G EV   I  N    + F+
Sbjct: 472 SSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSFV 531

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
             +L+++Y  CG L  A  +FD M  KT+VSW  ++ GY  +G  E A+ LF +M+  G+
Sbjct: 532 YISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGV 591

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
           +P   + +SV  ACS       G E  +G   K  L+        ++D+  + G + E+ 
Sbjct: 592 QPCEISMMSVFGACSLLPSLRLGREA-HGYALKCLLEDNAFIACSVIDMYAKNGSVMESF 650

Query: 306 ELIESMLVEPDGAVWGALLGACKIH 330
           ++    L E   A W A++    IH
Sbjct: 651 KVFNG-LKERSVASWNAMVMGYGIH 674



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 150/309 (48%), Gaps = 14/309 (4%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEI----NSVTMLCLLPICVDPGYLWLGMC 68
           V +N++I  +  N L  E   L G+M E+  EI    +  T+  +LP+C     + +G  
Sbjct: 251 VSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKG 310

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            H + +K  LD +  V N LM MY KCG ++  + +F     K +++WN M+ G++  G 
Sbjct: 311 VHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGD 370

Query: 129 ATHVLELYREMKSLG--VCPDAVTFVGVLSSCAHLGAHSVGLEVEQ----QIQANGFGSN 182
                +L R+M + G  +  D VT +  +  C      SV   +++     ++     +N
Sbjct: 371 IHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFE---ESVLPNLKELHCYSLKQEFVHNN 427

Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
             + NA +  YA+CG+L  A  +F  +  KTV SW A+IGGY       +++  + +M  
Sbjct: 428 ELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKS 487

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
           SG+ PD     S+LSACS       G E  +G+  +  L+     Y  ++ L    G+L+
Sbjct: 488 SGLLPDLFTVCSLLSACSQIKSLKLGKE-VHGLIIRNRLERDSFVYISLLSLYIHCGELS 546

Query: 303 EALELIESM 311
            A  L ++M
Sbjct: 547 TAHVLFDAM 555



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 119/252 (47%), Gaps = 7/252 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +NA+IS Y  N L    + +F KM  E G+  ++ T  C++  C     + +G+  H + 
Sbjct: 151 WNAVISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLV 210

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           VK  L  D  V N L++ Y   GSV    ++F  +PE+ L++WN+MI  ++ NGL+    
Sbjct: 211 VKTRLVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECF 270

Query: 134 ELYREM----KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
            L  +M      +   PD  T   VL  CA      VG  V              +NNAL
Sbjct: 271 LLLGQMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNAL 330

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG--IRP 247
           ++MY++CG +  A+ IF     K VVSW  ++GG+   G       L  +ML  G  +R 
Sbjct: 331 MDMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRA 390

Query: 248 DGTAFVSVLSAC 259
           D    ++ +  C
Sbjct: 391 DEVTILNAVPVC 402



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 127/257 (49%), Gaps = 11/257 (4%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM-KSLGVCP 146
           ++TMY  CGS D  R +FD + +K L  WNA+IS Y++N L  +VLE++ +M    G+ P
Sbjct: 123 VITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITESGLLP 182

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF 206
           D  TF  V+ +CA +    VGL V   +       + F++NAL++ Y   G++  A  +F
Sbjct: 183 DNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDALRVF 242

Query: 207 DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS----GIRPDGTAFVSVLSACSHA 262
             MP + +VSW ++I  +  +G  E    L  +M++        PD     +VL  C+  
Sbjct: 243 KIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCARD 302

Query: 263 GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGA 322
                G +  +G+  K  L         ++D+  + G +N+A ++I  +    +   W  
Sbjct: 303 REIGVG-KGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDA-QVIFKLNNNKNVVSWNT 360

Query: 323 LLG----ACKIHKNVEL 335
           ++G    A  IHK  +L
Sbjct: 361 MVGGFSAAGDIHKTFDL 377


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/518 (40%), Positives = 309/518 (59%), Gaps = 18/518 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+I     +    EAV LF +M  +G++++  TM  +L        L  G   H +
Sbjct: 209 VSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGRQFHGM 268

Query: 73  CVKFGLDLDFSVGNCLMTMYVKC-GSVDYGRKLFDQVPEKGLITWNAMISGYA-QNGLAT 130
            +K G   +  VG+ L+ +Y KC GS+   RK+F+++    L+ WN MISG++    L+ 
Sbjct: 269 MIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMISGFSLYEDLSE 328

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN-PF----L 185
             L  +REM+  G  PD  +FV V S+C++L + S+G    +Q+ A    S+ P+    +
Sbjct: 329 DGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLG----KQVHALAIKSDVPYNRVSV 384

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
           NNAL+ MY++CGN+  AR +FD MP    VS  ++I GY  HG    +++LF+ ML+  I
Sbjct: 385 NNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDI 444

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
            P+   F++VLSAC H G  ++G +YF  MK ++ ++P  EHY+CM+DLLGRAG+L EA 
Sbjct: 445 APNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKLKEAE 504

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR 365
            +IE+M   P    W  LLGAC+ H NVELA  A  + ++LEP N   YV+LSN+Y+ A 
Sbjct: 505 RIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLEPYNAAPYVMLSNMYASAA 564

Query: 366 NLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY----RMLDKLE 421
             +    V+ +MRER +KK PG S++E+  +VH+F+  D +H    EI+    +ML K++
Sbjct: 565 RWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGKMLKKMK 624

Query: 422 NLVQEHD---GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGD 478
                 D      + ++   +E       HSEKLA+AFG+I+T  G  I+V+KNLRICGD
Sbjct: 625 QAGYVPDIRWALVKDEEVEPDERERRLLYHSEKLAVAFGLISTEEGVPILVVKNLRICGD 684

Query: 479 CHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           CH  +KL+S +  R+  VRD  RFH FK G CSC+DYW
Sbjct: 685 CHNAVKLISALTGREITVRDTHRFHCFKEGHCSCRDYW 722



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 127/254 (50%), Gaps = 12/254 (4%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+  Y K   +   R++FD++P+  ++++N +I+ YA  G     L L+ E++ L + 
Sbjct: 79  NTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVRELRLG 138

Query: 146 PDAVTFVGVLSSCAHLGAHSVGL--EVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
            D  T  GV+++C       VGL  ++   +   G      +NNA++  Y+R G L +AR
Sbjct: 139 LDGFTLSGVITAC----GDDVGLVRQLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEAR 194

Query: 204 AIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
            +F  M     +  VSW A+I   G H  G  AV LF EM++ G++ D     SVL+A +
Sbjct: 195 RVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFT 254

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR-AGQLNEALELIESMLVEPDGAV 319
                  G + F+GM  K G        + ++DL  + AG + E  ++ E  +  PD  +
Sbjct: 255 CVKDLVGGRQ-FHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEE-ITAPDLVL 312

Query: 320 WGALLGACKIHKNV 333
           W  ++    +++++
Sbjct: 313 WNTMISGFSLYEDL 326



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 42/78 (53%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           N F  N LIN YA+   +  AR +FD +P+  +VS+  +I  Y   G     ++LF+E+ 
Sbjct: 74  NVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVR 133

Query: 242 KSGIRPDGTAFVSVLSAC 259
           +  +  DG     V++AC
Sbjct: 134 ELRLGLDGFTLSGVITAC 151



 Score = 46.2 bits (108), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 64/129 (49%), Gaps = 4/129 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD      H TV  N++I+GY  + +  E++ LF  M E+ +  NS+T + +L  CV  
Sbjct: 404 VFD--TMPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHT 461

Query: 61  GYLWLGM-CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP-EKGLITWNA 118
           G +  G    + +  +F ++ +    +C++ +  + G +    ++ + +P   G I W  
Sbjct: 462 GKVEEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWAT 521

Query: 119 MISGYAQNG 127
           ++    ++G
Sbjct: 522 LLGACRKHG 530



 Score = 41.6 bits (96), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 4/89 (4%)

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
           +L+N    +Y++CG+L  A+  F       V S+  +I  Y  H    +A ++FDE+ + 
Sbjct: 45  YLSNHFTLLYSKCGSLHNAQTSFHLTQYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQ- 103

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYF 272
              PD  ++ ++++A +  G     L  F
Sbjct: 104 ---PDIVSYNTLIAAYADRGECGPTLRLF 129


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/517 (38%), Positives = 297/517 (57%), Gaps = 20/517 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+IS Y      S+A+SLF +M   G E N  T   +L  C+      LG   H  
Sbjct: 125 VSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSH 184

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K   +    VG+ L+ MY K G +   R +F  +PE+ +++  A+ISGYAQ GL    
Sbjct: 185 IIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEA 244

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           LEL+R ++  G+  + VT+  VL++ + L A   G +V   +  +   S   L N+LI+M
Sbjct: 245 LELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDM 304

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML-KSGIRPDGTA 251
           Y++CGNL  AR IFD +  +TV+SW A++ GY  HG G   ++LF+ M+ ++ ++PD   
Sbjct: 305 YSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVT 364

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKN-KYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            ++VLS CSH GL DKG++ FY M + K  +QP  +HY C+VD+LGRAG++  A E ++ 
Sbjct: 365 VLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKK 424

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M  EP  A+WG LLGAC +H N+++ E    +++++EP N G YV+LSN+Y+ A   + +
Sbjct: 425 MPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEPENAGNYVILSNLYASAGRWEDV 484

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE---- 426
             +R +M ++ + K+PG S++EL   +H F   D +H +  E+   + +L    +E    
Sbjct: 485 RSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASDCSHPRREEVSAKVQELSARFKEAGYV 544

Query: 427 -------HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDC 479
                  HD     D++  E+ L     HSEKLA+ FG+I T     I V+KNLRIC DC
Sbjct: 545 PDLSCVLHD----VDEEQKEKILLS---HSEKLALTFGLIATPESVPIRVIKNLRICVDC 597

Query: 480 HLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           H F K  SKI  R+  +RD  RFH    G CSC DYW
Sbjct: 598 HNFAKYTSKIYGREVSLRDKNRFHRIVGGKCSCGDYW 634



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 87/278 (31%), Positives = 145/278 (52%), Gaps = 13/278 (4%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L+  YVKC S+   R +FD +PE+ +++W AMIS Y+Q G A+  L L+ +M   G  P+
Sbjct: 99  LIVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPN 158

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
             TF  VL+SC       +G ++   I    + ++ ++ ++L++MYA+ G + +AR IF 
Sbjct: 159 EFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQ 218

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            +P + VVS TAII GY   G  E A++LF  + + G++ +   + SVL+A S     D 
Sbjct: 219 CLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDH 278

Query: 268 GLEYFYGMKNKYGLQPGPEH---YTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
           G +    + N       P +      ++D+  + G L  A  + ++ L E     W A+L
Sbjct: 279 GKQ----VHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDT-LHERTVISWNAML 333

Query: 325 -GACKIHKNVELAELAFGKVI---KLEPMNTGYYVLLS 358
            G  K  +  E+ EL F  +I   K++P +     +LS
Sbjct: 334 VGYSKHGEGREVLEL-FNLMIDENKVKPDSVTVLAVLS 370



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 65/130 (50%)

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
           T + E    M   G+  +   +  VL+ C    A   G  V   +    +    +L   L
Sbjct: 40  TRLREALLHMALRGLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRL 99

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           I  Y +C +L+ AR +FD MP + VVSWTA+I  Y   G+   A+ LF +ML+SG  P+ 
Sbjct: 100 IVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNE 159

Query: 250 TAFVSVLSAC 259
             F +VL++C
Sbjct: 160 FTFATVLTSC 169


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 191/444 (43%), Positives = 276/444 (62%), Gaps = 9/444 (2%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140
           D    N +++ Y + G +D  R+LFD++PEK +++W  MISG  Q G     L+++  M 
Sbjct: 167 DMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNML 226

Query: 141 SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
           + G+ P+  T    L++CA+L A   G  +   I+ N    N  L   LI+MYA+CG L+
Sbjct: 227 AKGMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELE 286

Query: 201 KARAIFDGMPR--KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSA 258
            A  +F+  PR  + V  W A+IGG+ +HG  + A+++F++M    + P+   FV++L+A
Sbjct: 287 FASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNA 346

Query: 259 CSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGA 318
           CSH    ++G  YF  M + Y ++P  EHY C+VDLLGRAG+L EA E+I SM + PD A
Sbjct: 347 CSHGNRVEEGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVA 406

Query: 319 VWGALLGACKIHKNVELAELAFGKVIK-LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMM 377
           +WGALL ACKIHK+ E+ E   GK++K L+P + G +VLL+NIYS   N +    +R  +
Sbjct: 407 IWGALLSACKIHKDAEMGE-RVGKIVKELDPNHLGCHVLLANIYSLTGNWNEARTLREKI 465

Query: 378 RERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ-----EHDGTKR 432
            E   KK PG S +EL G  H F+VGDR+H QT ++Y  LD++   ++        G   
Sbjct: 466 AESGKKKTPGCSSIELNGMFHQFLVGDRSHPQTKQLYLFLDEMITKLKIAGYIPESGEVL 525

Query: 433 SDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDR 492
            D  ++E+       HSEKLAIAFG++NT+P T I ++KNLR+C DCHL IK +SK+ DR
Sbjct: 526 LDIDDNEDRETALLKHSEKLAIAFGLMNTTPKTPIRIVKNLRVCSDCHLAIKFISKVYDR 585

Query: 493 QFIVRDATRFHHFKSGFCSCKDYW 516
           + IVRD  R+HHFK G CSC DYW
Sbjct: 586 EIIVRDRIRYHHFKDGTCSCNDYW 609



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 117/242 (48%), Gaps = 18/242 (7%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +     V +  +ISG +      EA+ +F  M  +G+  N  T+   L  C + 
Sbjct: 190 LFDEMPEKD--VVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAACANL 247

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP--EKGLITWNA 118
             L  G   H    K  + ++  +   L+ MY KCG +++  KLF+  P  ++ +  WNA
Sbjct: 248 VALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNA 307

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ-----Q 173
           MI G+A +G +   +E++ +MK   V P+ VTFV +L++C+H      G  VE+     +
Sbjct: 308 MIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSH------GNRVEEGRYYFE 361

Query: 174 IQANGFGSNPFLNN--ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHG 230
             A+ +   P L +   L+++  R G LK+A  I   M     V  W A++    IH   
Sbjct: 362 SMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSACKIHKDA 421

Query: 231 EV 232
           E+
Sbjct: 422 EM 423


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/510 (38%), Positives = 291/510 (57%), Gaps = 8/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + + ++I G  LN    EA+ +F KM   GVE    T  C+L  C +     LG+  H  
Sbjct: 168 ISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGH 227

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK G      +   L+T Y  C  +++  K+F++   K ++ W A+++ Y  N      
Sbjct: 228 VVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDA 287

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L ++ +M  +G  P+  TF   L +C  L A   G E+       G  ++ F+ N+L+ M
Sbjct: 288 LRVFGDMTKMGALPNQSTFSITLKACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVM 347

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y  CGN+  A A+F  +  K +VSW +II G   HG G  A+  F++M++ G+ P+   F
Sbjct: 348 YTECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITF 407

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
             +LSACS +G+  KG  +F  +         P+HY CMVD+LGR G+L+EA EL+  M 
Sbjct: 408 TGLLSACSRSGMLLKGRCFFEYISRYKSNVLRPQHYACMVDILGRCGKLDEAEELVRYMP 467

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           V+ +  +W ALL AC++H N+E+AE A   ++ LEP  +  YVLLSNIY+ A     + R
Sbjct: 468 VKANSMIWLALLSACRVHSNLEVAERAAKHILDLEPNCSSAYVLLSNIYASAGRWADVSR 527

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           +R+ M++  L K PG S+V L+G+ H F+  DR+H  +  IY  LD L   ++E      
Sbjct: 528 MRVKMKQGGLVKQPGSSWVVLRGKKHEFLSADRSHPLSERIYEKLDWLGKKLKEFGYV-- 585

Query: 433 SDQKNSEEHLNDTE------VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
            DQK +   + D +       HSE+LAIAFG+++T  G+ I VMKNLR+CGDCH  IKL+
Sbjct: 586 PDQKFALHDVEDEQKEEMLSFHSERLAIAFGLVSTVEGSTITVMKNLRVCGDCHSVIKLM 645

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SKIV R+ +VRD+ RFHHFK+G CSC DYW
Sbjct: 646 SKIVGRKIVVRDSGRFHHFKNGICSCSDYW 675



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 107/389 (27%), Positives = 185/389 (47%), Gaps = 41/389 (10%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD+ I S +L + Y  +I+GY  N  + +A+ LF +M  + V    V+   ++  C+D 
Sbjct: 34  IFDK-IPSPNLHL-YTKMIAGYTRNDRLCDALKLFDRMSVRDV----VSWNSMIKGCLDC 87

Query: 61  GYLWLGMCCHCI-----------------CVKFG---------LDL---DFSVGNCLMTM 91
           G L  GM                       +KFG         LD+   D +  N ++  
Sbjct: 88  GNL--GMATRLFDEMPEKNVISWTTMVNGYLKFGRVELAQRLFLDMHVKDVAAWNAMVHG 145

Query: 92  YVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTF 151
           Y + G V+ G +LF+++P + +I+W +MI G   NG +   L ++++M   GV P   TF
Sbjct: 146 YFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTF 205

Query: 152 VGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR 211
             VLS+CA+    ++G++V   +   G   + F++ +LI  YA C  ++ A  IF+    
Sbjct: 206 ACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNETLT 265

Query: 212 KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEY 271
           K VV WTA++  Y  +   + A+++F +M K G  P+ + F   L AC      DKG E 
Sbjct: 266 KNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEALDKGKE- 324

Query: 272 FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHK 331
            + M  K GL+        +V +    G +N A+ +  + + E D   W +++     H 
Sbjct: 325 IHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRN-INEKDIVSWNSIIVGSAQHG 383

Query: 332 NVELAELAFGKVIK--LEPMNTGYYVLLS 358
               A + F ++I+  ++P    +  LLS
Sbjct: 384 FGLWALIFFNQMIRRGVDPNEITFTGLLS 412



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 133/261 (50%), Gaps = 10/261 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +F+E++  T   V + AL++ YV N+   +A+ +FG M + G   N  T    L  C   
Sbjct: 259 IFNETL--TKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGL 316

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H + +K GL+ D  VGN L+ MY +CG+V+    +F  + EK +++WN++I
Sbjct: 317 EALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSII 376

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVG---LEVEQQIQAN 177
            G AQ+G     L  + +M   GV P+ +TF G+LS+C+  G    G    E   + ++N
Sbjct: 377 VGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLLKGRCFFEYISRYKSN 436

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT-VVSWTAIIGGYGIHGHGEVAVQL 236
                P     ++++  RCG L +A  +   MP K   + W A++    +H + EVA + 
Sbjct: 437 VL--RPQHYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSACRVHSNLEVAERA 494

Query: 237 FDEMLKSGIRPDGTAFVSVLS 257
              +L   + P+ ++   +LS
Sbjct: 495 AKHILD--LEPNCSSAYVLLS 513



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 125/279 (44%), Gaps = 27/279 (9%)

Query: 92  YVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTF 151
           ++K   +D  R +FD++P   L  +  MI+GY +N      L+L+  M    V       
Sbjct: 22  HLKNQRLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVRDVVSWNSMI 81

Query: 152 VGVLSSCAHLGAHSVGLE-------VEQQIQANGF--------GSNPFLN---------N 187
            G L  C +LG  +   +       +      NG+            FL+         N
Sbjct: 82  KGCL-DCGNLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVELAQRLFLDMHVKDVAAWN 140

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           A+++ Y   G +++   +F+ MP + V+SWT++IGG  ++G  E A+ +F +ML+SG+ P
Sbjct: 141 AMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEP 200

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
             + F  VLSAC++A   + G++  +G   K G          ++       ++  A ++
Sbjct: 201 TWSTFACVLSACANAVEFNLGVQ-VHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKI 259

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
               L + +   W ALL A   +   + A   FG + K+
Sbjct: 260 FNETLTK-NVVKWTALLTAYVWNNKHQDALRVFGDMTKM 297


>gi|125529196|gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
          Length = 785

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/510 (37%), Positives = 295/510 (57%), Gaps = 9/510 (1%)

Query: 13  VCYNALISGYVLNSLV------SEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLG 66
           V +N +I+G+     V      SEA++L+ +++ +G++    T   +L  C   GYL  G
Sbjct: 279 VMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFG 338

Query: 67  MCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQN 126
              H   +K+    D  +G+ L+ +Y   G ++ G + F   P+  ++TW AM+SG  QN
Sbjct: 339 KQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQN 398

Query: 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
            L    L L+ E    G+ PD  T   V+++CA L     G +++     +GF     + 
Sbjct: 399 ELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMG 458

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           N+ ++MYAR G++  A   F  M    VVSW+A+I  +  HG    A+  FDEM+ + + 
Sbjct: 459 NSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVV 518

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           P+   F+ VL+ACSH GL D+GL Y+  M   YGL P  +H TC+VDLLGRAG+L +A  
Sbjct: 519 PNEITFLGVLTACSHGGLVDEGLRYYETMNKDYGLSPTIKHCTCVVDLLGRAGRLADAEA 578

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366
            I + +   D  +W +LL +C+IH+++E  +L   ++++LEP ++  YV+L N+Y +A  
Sbjct: 579 FISNGIFHADPVIWRSLLASCRIHRDLERGQLVANRIMELEPTSSASYVILYNMYLDAGE 638

Query: 367 LDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE 426
           L    + R +M++R +KK+PG S++ELK  VH F+ GD++H ++  IY    KLE ++  
Sbjct: 639 LSLASKTRDLMKQRGVKKEPGLSWIELKCGVHSFVAGDKSHPESSAIY---TKLEEMLSR 695

Query: 427 HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
            +    +D + S+   N    HSEKLA+A G+I+      I VMKNLR+C DCH  +KL+
Sbjct: 696 IEKLATTDTEISKREQNLMNCHSEKLAVALGMIHLPQSAPIRVMKNLRVCRDCHSTMKLI 755

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SK  +R+ I+RD  RFHHF+ G CSC DYW
Sbjct: 756 SKSENREIILRDPIRFHHFRDGSCSCADYW 785



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 153/325 (47%), Gaps = 12/325 (3%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +N LI  Y    L   ++    + R  GV+++  +    L  C   G+L  G   H 
Sbjct: 74  AVSFNLLIDAYSREGLAPLSLETLARARRAGVDVDRFSYAAALAACSRAGHLRAGRAVHA 133

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + +  GL     V N L++MY KCG +   R++FD   E+  ++WN+++SGY + G    
Sbjct: 134 LAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREE 193

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGL--EVEQQIQANGFGSNPFLNNAL 189
           ++ ++  M+  G+  ++     V+  C+  G  ++ +   V   +   G  S+ FL +A+
Sbjct: 194 MVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAM 253

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGY-------GIHGHGEVAVQLFDEMLK 242
           I+MYA+ G L +A A+F  +    VV +  +I G+       G     E A+ L+ E+  
Sbjct: 254 IDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASE-ALTLYSEVQS 312

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
            G++P    F SVL AC+ AG  + G +  +G   KY  Q      + ++DL   +G + 
Sbjct: 313 RGMQPTEFTFSSVLRACNLAGYLEFG-KQIHGQVIKYTFQEDDFIGSALIDLYFNSGCME 371

Query: 303 EALELIESMLVEPDGAVWGALLGAC 327
           +      S   + D   W A++  C
Sbjct: 372 DGFRCFRSS-PKHDIVTWTAMVSGC 395



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 129/267 (48%), Gaps = 10/267 (3%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+  Y + G     R+L D++P +  +++N +I  Y++ GLA   LE     +  GV 
Sbjct: 47  NTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRAGVD 106

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
            D  ++   L++C+  G    G  V      +G  S  F++N+L++MY++CG + +AR +
Sbjct: 107 VDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRV 166

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           FD    +  VSW +++ GY   G  E  V++F  M + G+  +  A  SV+  CS  G  
Sbjct: 167 FDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDG 226

Query: 266 DKGL-EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
              + E  +G   K GL       + M+D+  + G L EA  L  S + EP+  ++  ++
Sbjct: 227 TMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRS-VQEPNVVMFNTMI 285

Query: 325 -GACKIHKNVELAELAFGKVIKLEPMN 350
            G C+        E   GK +  E + 
Sbjct: 286 AGFCR-------TETVIGKEVASEALT 305



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 112/221 (50%), Gaps = 4/221 (1%)

Query: 10  HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCC 69
           H  V + A++SG V N L  +A+SLF +    G++ +  T+  ++  C        G   
Sbjct: 383 HDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQI 442

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
            C   K G D    +GN  + MY + G VD   + F ++    +++W+A+IS +AQ+G A
Sbjct: 443 QCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCA 502

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN-- 187
              L  + EM    V P+ +TF+GVL++C+H G    GL   + +  + +G +P + +  
Sbjct: 503 RDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYYETMNKD-YGLSPTIKHCT 561

Query: 188 ALINMYARCGNLKKARA-IFDGMPRKTVVSWTAIIGGYGIH 227
            ++++  R G L  A A I +G+     V W +++    IH
Sbjct: 562 CVVDLLGRAGRLADAEAFISNGIFHADPVIWRSLLASCRIH 602



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 2/141 (1%)

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
           FL N L+  Y R G    AR + D MPR+  VS+  +I  Y   G   ++++      ++
Sbjct: 44  FLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRA 103

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
           G+  D  ++ + L+ACS AG    G    + +    GL  G      +V +  + G++ E
Sbjct: 104 GVDVDRFSYAAALAACSRAGHLRAG-RAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGE 162

Query: 304 ALELIESMLVEPDGAVWGALL 324
           A  + + +  E D   W +L+
Sbjct: 163 ARRVFD-VAEERDDVSWNSLV 182


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/555 (37%), Positives = 314/555 (56%), Gaps = 41/555 (7%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+ +      V + ++ S YV   L    +++F +M   GV+ NSVT+  +LP C + 
Sbjct: 189 VFDDLVVKD--VVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSEL 246

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLI------ 114
             L  G   H   V+ G+  +  V + L+++Y +C SV   R +FD +P + ++      
Sbjct: 247 KDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVL 306

Query: 115 -----------------------------TWNAMISGYAQNGLATHVLELYREMKSLGVC 145
                                        TWNA+I G  +NG     +E+ R+M++LG  
Sbjct: 307 TAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFK 366

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P+ +T    L +C+ L +  +G EV   +  +    +     AL+ MYA+CG+L  +R +
Sbjct: 367 PNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNV 426

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           FD + RK VV+W  +I    +HG+G   + LF+ ML+SGI+P+   F  VLS CSH+ L 
Sbjct: 427 FDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLV 486

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           ++GL+ F  M   + ++P   HY CMVD+  RAG+L+EA E I+ M +EP  + WGALLG
Sbjct: 487 EEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLG 546

Query: 326 ACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKD 385
           AC+++KNVELA+++  K+ ++EP N G YV L NI   A+        R++M+ER + K 
Sbjct: 547 ACRVYKNVELAKISANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEARILMKERGITKT 606

Query: 386 PGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD----QKNSEEH 441
           PG S++++  RVH F+VGD+N+ ++ +IY  LD+L   ++       +D      + EE 
Sbjct: 607 PGCSWLQVGDRVHTFVVGDKNNMESDKIYNFLDELGEKMKSAGYKPDTDYVLQDIDQEEK 666

Query: 442 LNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATR 501
                 HSEKLA+AFGI+N +  + I V KNLRICGDCH  IK VSK+V    IVRD+ R
Sbjct: 667 AESLCSHSEKLAVAFGILNLNGQSSIRVFKNLRICGDCHNAIKYVSKVVGVTIIVRDSLR 726

Query: 502 FHHFKSGFCSCKDYW 516
           FHHF++G CSC+D W
Sbjct: 727 FHHFRNGNCSCQDLW 741



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 114/450 (25%), Positives = 201/450 (44%), Gaps = 44/450 (9%)

Query: 4   ESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL 63
           ++I     T C + LIS +    L +EA+ L+  +R +G++ ++   L +   C   G  
Sbjct: 90  DNIPQPDPTTC-STLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGASGDA 148

Query: 64  WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGY 123
                 H   ++ G+  D  +GN L+  Y KC  V+  R++FD +  K +++W +M S Y
Sbjct: 149 SRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCY 208

Query: 124 AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP 183
              GL    L ++ EM   GV P++VT   +L +C+ L     G  +      +G   N 
Sbjct: 209 VNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENV 268

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
           F+ +AL+++YARC ++K+AR +FD MP + VVSW  ++  Y  +   +  + LF +M   
Sbjct: 269 FVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSK 328

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-------------------- 283
           G+  D   + +V+  C   G T+K +E    M+N  G +P                    
Sbjct: 329 GVEADEATWNAVIGGCMENGQTEKAVEMLRKMQN-LGFKPNQITISSFLPACSILESLRM 387

Query: 284 GPE-------HY--------TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACK 328
           G E       H+        T +V +  + G LN +  + + M+   D   W  ++ A  
Sbjct: 388 GKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFD-MICRKDVVAWNTMIIANA 446

Query: 329 IHKNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDP 386
           +H N     L F  +++  ++P +  +  +LS         +G+     M R+  ++ D 
Sbjct: 447 MHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDA 506

Query: 387 GYSYVELKGRVHLFMVGDRNHHQTVEIYRM 416
            + Y  +   V +F    R H     I RM
Sbjct: 507 NH-YACM---VDVFSRAGRLHEAYEFIQRM 532



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 113/240 (47%), Gaps = 4/240 (1%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L+   +  G     ++LFD +P+    T + +IS +   GL    + LY  +++ G+ P 
Sbjct: 72  LLKAALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPH 131

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
              F+ V  +C   G  S   EV       G  S+ FL NALI+ Y +C  ++ AR +FD
Sbjct: 132 NSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFD 191

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD- 266
            +  K VVSWT++   Y   G   + + +F EM  +G++P+     S+L ACS   L D 
Sbjct: 192 DLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSE--LKDL 249

Query: 267 KGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
           K     +G   ++G+       + +V L  R   + +A  L+  ++   D   W  +L A
Sbjct: 250 KSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQA-RLVFDLMPHRDVVSWNGVLTA 308


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/521 (37%), Positives = 313/521 (60%), Gaps = 7/521 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD S+ S  L + +NA+ISGYV N ++ E+ +LF ++ + G   +S T++ L+  C   
Sbjct: 303 VFD-SMCSRSL-ISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQT 360

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H   ++  L+    +   ++ MY KCG++     +F ++ +K +ITW AM+
Sbjct: 361 SDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAML 420

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            G +QNG A   L+L+ +M+   V  ++VT V ++  CAHLG+ + G  V      +G+ 
Sbjct: 421 VGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYA 480

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDG-MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            +  + +ALI+MYA+CG +  A  +F+     K V+   ++I GYG+HGHG  A+ ++  
Sbjct: 481 FDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSR 540

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M++  ++P+ T FVS+L+ACSH+GL ++G   F+ M+  + ++P  +HY C+VDL  RAG
Sbjct: 541 MIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAG 600

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
           +L EA EL++ M  +P   V  ALL  C+ HKN  +      ++I L+ +N+G YV+LSN
Sbjct: 601 RLEEADELVKQMPFQPSTDVLEALLSGCRTHKNTNMGIQIADRLISLDYLNSGIYVMLSN 660

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
           IY+EAR  + +  +R +MR + +KK PGYS +E+  +V+ F   D +H    +IY++L+ 
Sbjct: 661 IYAEARKWESVNYIRGLMRMQGMKKIPGYSLIEVGNKVYTFFASDDSHPSWADIYQLLEN 720

Query: 420 LENLVQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRI 475
           L   V+      D +      N    +     HSE+LAIAFG+++T  G+ I + KNLR+
Sbjct: 721 LRLEVEAEGYIPDTSCVLRDVNEPMKVKLLWGHSERLAIAFGLLSTPCGSLIKITKNLRV 780

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           C DCH   K +SKIV R+ IVRDA RFHHF +G CSC D+W
Sbjct: 781 CVDCHNVTKYISKIVQREIIVRDANRFHHFVNGKCSCNDFW 821



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 175/348 (50%), Gaps = 3/348 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           VC+N++I GYV   L  E++ +F +M   G+  + VTM  LL  C   G   +GMC H  
Sbjct: 212 VCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSY 271

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +  G+  D  V   L+ MY   G       +FD +  + LI+WNAMISGY QNG+    
Sbjct: 272 VLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPES 331

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
             L+R +   G   D+ T V ++  C+       G  +   I      S+  L+ A+++M
Sbjct: 332 YALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDM 391

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++CG +K+A  +F  M +K V++WTA++ G   +G+ E A++LF +M +  +  +    
Sbjct: 392 YSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTL 451

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           VS++  C+H G   KG    +    ++G        + ++D+  + G+++ A +L  +  
Sbjct: 452 VSLVHCCAHLGSLTKG-RTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEF 510

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVI--KLEPMNTGYYVLLS 358
              D  +  +++    +H +   A   + ++I  +L+P  T +  LL+
Sbjct: 511 HLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLT 558



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 163/325 (50%), Gaps = 6/325 (1%)

Query: 1   VFDE-SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD 59
           VFD+ S+  T   VC NA+I+G++ N    E   LF  M    +EINS T +  L  C D
Sbjct: 101 VFDQCSLPET--AVC-NAMIAGFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTD 157

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
                +GM      V+ G  L   VG+ ++   VK G +   +K+FD +PEK ++ WN++
Sbjct: 158 LLDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSI 217

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I GY Q GL    ++++ EM   G+ P  VT   +L +C   G   VG+     + A G 
Sbjct: 218 IGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGM 277

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
           G++ F+  +L++MY+  G+   A  +FD M  ++++SW A+I GY  +G    +  LF  
Sbjct: 278 GNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRR 337

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           +++SG   D    VS++  CS     + G    +    +  L+      T +VD+  + G
Sbjct: 338 LVQSGSGFDSGTLVSLIRGCSQTSDLENG-RILHSCIIRKELESHLVLSTAIVDMYSKCG 396

Query: 300 QLNEALELIESMLVEPDGAVWGALL 324
            + +A  ++   + + +   W A+L
Sbjct: 397 AIKQA-TIVFGRMGKKNVITWTAML 420



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 112/228 (49%), Gaps = 9/228 (3%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L+ +Y   G + + R +FDQ         NAMI+G+ +N     V  L+R M S  +  +
Sbjct: 85  LIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDIEIN 144

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
           + T +  L +C  L    VG+E+ +     GF  + ++ ++++N   + G L  A+ +FD
Sbjct: 145 SYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFD 204

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
           GMP K VV W +IIGGY   G    ++Q+F EM+  G+RP      ++L AC  +GL   
Sbjct: 205 GMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKV 264

Query: 268 GLEYFYGMKNKYGLQPGPEH----YTCMVDLLGRAGQLNEALELIESM 311
           G+       + Y L  G  +     T +VD+    G    A  + +SM
Sbjct: 265 GM-----CAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSM 307


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/545 (38%), Positives = 305/545 (55%), Gaps = 46/545 (8%)

Query: 15  YNALISGYVLNSLV--SEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           YN +I G++ + L+  +  + L+  M +  V  N+ T   LL  C    +   GM  H  
Sbjct: 91  YNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRKIQH---GMQIHAH 147

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             KFG        N L+ MYV   +++  R++F  +P    ++W ++ISGY++ GL    
Sbjct: 148 LFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLIDEA 207

Query: 133 LELYREMKSLGVCP--------------------------------DAVTFVGVLSSCAH 160
             +++ M                                       D      +LS+C  
Sbjct: 208 FTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSACTG 267

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR--KTVVSWT 218
           LGA   G  + + I+ NG   +  L  A+++MY +CG L+KA  +F  +P   + + SW 
Sbjct: 268 LGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWN 327

Query: 219 AIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278
            +IGG  +HG+GE A+QLF EM +  + PD   F+++L+AC+H+GL ++G  YF  M   
Sbjct: 328 CMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIRV 387

Query: 279 YGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAEL 338
           YG++P  EH+ CMVDLLGRAG + EA +LI+ M V PD  V G LLGACK H+N+EL E 
Sbjct: 388 YGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLGACKKHRNIELGEE 447

Query: 339 AFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVH 398
              +VI+LEP N+G YVLL+N+Y+ A   +   +VR +M +R +KK PG+S +EL+G VH
Sbjct: 448 IGRRVIELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKKAPGFSMIELQGTVH 507

Query: 399 LFMVGDRNHHQTVE----IYRMLDKLENL--VQEHDGTKRS-DQKNSEEHLNDTEVHSEK 451
            F+ G+RNH Q  E    +Y ML+ L+++  V + +G     D    E+  N    HSEK
Sbjct: 508 EFIAGERNHPQAKELHAKVYEMLEHLKSVGYVADTNGVLHGHDFDEEEDGENPLYYHSEK 567

Query: 452 LAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCS 511
           LAIAFG+  T PG  + ++KNLRIC DCH   KL+S + DR+ IVRD TRFH FK G CS
Sbjct: 568 LAIAFGLSRTKPGETLRILKNLRICEDCHHACKLISTVFDREIIVRDRTRFHRFKMGQCS 627

Query: 512 CKDYW 516
           C+DYW
Sbjct: 628 CQDYW 632



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 157/359 (43%), Gaps = 50/359 (13%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVD---YGRKLFDQVPEKGLITWNAMISGYAQN 126
           H   ++ GL     +   L+    +  + D   Y  KLFD +P+     +N +I G+  +
Sbjct: 42  HSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPDAFLYNTIIKGFLHS 101

Query: 127 GL--ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF 184
            L     +L LY  M    V P+  TF  +L +C  +     G+++   +   GFG++  
Sbjct: 102 QLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRKIQH---GMQIHAHLFKFGFGAHSV 158

Query: 185 LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF------- 237
             N+LI+MY     L++AR +F  +P    VSWT++I GY   G  + A  +F       
Sbjct: 159 CLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLIDEAFTIFQLMPQKN 218

Query: 238 ----DEMLKSGIRP---------------------DGTAFVSVLSACSHAGLTDKGLEYF 272
               + M+ + ++                      D     ++LSAC+  G  D+G ++ 
Sbjct: 219 SASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSACTGLGALDQG-KWI 277

Query: 273 YGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDG-AVWGALLGACKIHK 331
           +    + G++   +  T +VD+  + G L +AL++  S+ +     + W  ++G   +H 
Sbjct: 278 HEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMIGGLAMHG 337

Query: 332 NVELAELAFGKV--IKLEPMNTGYYVLL-----SNIYSEARNLDGIMRVRMMMRERRLK 383
           N E A   F ++   ++ P +  +  LL     S +  E RN    M +R+   E R++
Sbjct: 338 NGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYM-IRVYGIEPRME 395


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/439 (41%), Positives = 271/439 (61%), Gaps = 11/439 (2%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
             ++T Y K G++D  R+LFD +P K  I WNAMI GY Q+G     L L+R M   GV 
Sbjct: 200 TAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVD 259

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ-ANGFGSNPFLNNALINMYARCGNLKKARA 204
           PD V  +  LS+ A LG    G  +   ++ +     N  +  ALI+MY +CG+L+ A +
Sbjct: 260 PDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVS 319

Query: 205 IFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL 264
           +F+ +  K +V W A+I GY +HG    A+++F ++   G+ P    F+ +L+ACSH+GL
Sbjct: 320 VFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGL 379

Query: 265 TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
            D+G ++F  M+ +Y + P  EHY CMVDLLGRAG + EA  L++SM + PD  +W +LL
Sbjct: 380 VDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLL 439

Query: 325 GACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKK 384
            AC++HKN+ L +     ++     N+G Y+LLSNIY+   N + + RVR MM+   ++K
Sbjct: 440 AACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQK 499

Query: 385 DPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS-------DQKN 437
           +PG S +E+  +V+ F+ GD +H +T EIY ML+K+  +V+E     ++       D+  
Sbjct: 500 EPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVT 559

Query: 438 SEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVR 497
            E+ L    VHSEKLA+AFG+I+T+PG  I ++KNLR C DCH  +KL+SKI  R+ + R
Sbjct: 560 KEKAL---AVHSEKLAVAFGLISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFR 616

Query: 498 DATRFHHFKSGFCSCKDYW 516
           D  RFHHF  G C+C DYW
Sbjct: 617 DRNRFHHFVDGSCTCGDYW 635



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 126/241 (52%), Gaps = 5/241 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC- 71
           +C+NA+I GY  +   +EA+ LF  M   GV+ + V ++  L      G    G   H  
Sbjct: 228 ICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSY 287

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           +     + L+  VG  L+ MY KCGS++    +F+ + +K ++ WNAMI+GYA +G +  
Sbjct: 288 VKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRK 347

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--AL 189
            LE++ +++S G+ P  +TF+G+L++C+H G    G +  Q ++   +   P + +   +
Sbjct: 348 ALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEE-YAIVPKIEHYGCM 406

Query: 190 INMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           +++  R G +++A  +   M      V W +++    +H +  +  Q+ D ++  G+   
Sbjct: 407 VDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANS 466

Query: 249 G 249
           G
Sbjct: 467 G 467



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 137/326 (42%), Gaps = 45/326 (13%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   V+ G+D D +VG  L   Y     +D    L    P+   + + + I  ++  GL 
Sbjct: 55  HAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGLH 114

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF----GSNPFL 185
              L L  EM   G+ P + T    L +C        GL + + + A  F      + ++
Sbjct: 115 LAALALLSEMLGRGLIPTSHTLSSSLPACH-------GLALGRALHAYAFKLALAGDSYV 167

Query: 186 NNALINMYARCGNLKKARA-------------------------------IFDGMPRKTV 214
             AL+ MYAR G+   ARA                               +FDGMP K  
Sbjct: 168 ATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDF 227

Query: 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYG 274
           + W A+I GY  HG    A++LF  ML+SG+ PD  A +  LSA +  G  + G      
Sbjct: 228 ICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSY 287

Query: 275 MKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVE 334
           +KN   +Q      T ++D+  + G L +A+ +  S + + D  VW A++    +H +  
Sbjct: 288 VKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNS-IGDKDIVVWNAMINGYAMHGDSR 346

Query: 335 LAELAFGKVIK--LEPMNTGYYVLLS 358
            A   F ++    L P +  +  LL+
Sbjct: 347 KALEMFSQLRSQGLWPTDITFIGLLN 372


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/439 (41%), Positives = 271/439 (61%), Gaps = 11/439 (2%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
             ++T Y K G++D  R+LFD +P K  I WNAMI GY Q+G     L L+R M   GV 
Sbjct: 199 TAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVD 258

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ-ANGFGSNPFLNNALINMYARCGNLKKARA 204
           PD V  +  LS+ A LG    G  +   ++ +     N  +  ALI+MY +CG+L+ A +
Sbjct: 259 PDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVS 318

Query: 205 IFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL 264
           +F+ +  K +V W A+I GY +HG    A+++F ++   G+ P    F+ +L+ACSH+GL
Sbjct: 319 VFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGL 378

Query: 265 TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
            D+G ++F  M+ +Y + P  EHY CMVDLLGRAG + EA  L++SM + PD  +W +LL
Sbjct: 379 VDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLL 438

Query: 325 GACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKK 384
            AC++HKN+ L +     ++     N+G Y+LLSNIY+   N + + RVR MM+   ++K
Sbjct: 439 AACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQK 498

Query: 385 DPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS-------DQKN 437
           +PG S +E+  +V+ F+ GD +H +T EIY ML+K+  +V+E     ++       D+  
Sbjct: 499 EPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVT 558

Query: 438 SEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVR 497
            E+ L    VHSEKLA+AFG+I+T+PG  I ++KNLR C DCH  +KL+SKI  R+ + R
Sbjct: 559 KEKAL---AVHSEKLAVAFGLISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFR 615

Query: 498 DATRFHHFKSGFCSCKDYW 516
           D  RFHHF  G C+C DYW
Sbjct: 616 DRNRFHHFVDGSCTCGDYW 634



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 126/241 (52%), Gaps = 5/241 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC- 71
           +C+NA+I GY  +   +EA+ LF  M   GV+ + V ++  L      G    G   H  
Sbjct: 227 ICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSY 286

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           +     + L+  VG  L+ MY KCGS++    +F+ + +K ++ WNAMI+GYA +G +  
Sbjct: 287 VKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRK 346

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--AL 189
            LE++ +++S G+ P  +TF+G+L++C+H G    G +  Q ++   +   P + +   +
Sbjct: 347 ALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEE-YAIVPKIEHYGCM 405

Query: 190 INMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           +++  R G +++A  +   M      V W +++    +H +  +  Q+ D ++  G+   
Sbjct: 406 VDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANS 465

Query: 249 G 249
           G
Sbjct: 466 G 466



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 137/326 (42%), Gaps = 45/326 (13%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   V+ G+D D +VG  L   Y     +D    L    P+   + + + I  ++  GL 
Sbjct: 54  HAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGLH 113

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF----GSNPFL 185
              L L  EM   G+ P + T    L +C        GL + + + A  F      + ++
Sbjct: 114 LAALALLSEMLGRGLIPTSHTLSSSLPACH-------GLALGRALHAYAFKLALAGDSYV 166

Query: 186 NNALINMYARCGNLKKARA-------------------------------IFDGMPRKTV 214
             AL+ MYAR G+   ARA                               +FDGMP K  
Sbjct: 167 ATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDF 226

Query: 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYG 274
           + W A+I GY  HG    A++LF  ML+SG+ PD  A +  LSA +  G  + G      
Sbjct: 227 ICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSY 286

Query: 275 MKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVE 334
           +KN   +Q      T ++D+  + G L +A+ +  S + + D  VW A++    +H +  
Sbjct: 287 VKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNS-IGDKDIVVWNAMINGYAMHGDSR 345

Query: 335 LAELAFGKVIK--LEPMNTGYYVLLS 358
            A   F ++    L P +  +  LL+
Sbjct: 346 KALEMFSQLRSQGLWPTDITFIGLLN 371


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/507 (40%), Positives = 297/507 (58%), Gaps = 13/507 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N +I   + N+   +A+ L+ +M       N  T   +L  C D G +  G+  H   V
Sbjct: 126 WNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLV 185

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K GL  D  + +  + MY   G +   R++ D   + G +    M     + G     LE
Sbjct: 186 KHGLGGDGHILSSAIRMYASFGRLVEARRILDD--KGGEVDAVCMPD---RKGCFMEALE 240

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           ++ +M+   + P       VLS+CA+LGA   G  +    + N    +  L  +L++MYA
Sbjct: 241 IFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYA 300

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG +  A  +F+ M  K V SW A+IGG  +HG  E A+ LF +M    I P+   FV 
Sbjct: 301 KCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPNEITFVG 357

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VL+AC+H GL  KGL  F  M+ +YG++P  EHY C+VDLLGRAG L EA +++ S+  E
Sbjct: 358 VLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTE 417

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
           P  AVWGALLGAC+ H NVEL E     +++LEP N+G Y LLSNIY++A   + +  VR
Sbjct: 418 PTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVR 477

Query: 375 MMMRERRLKKDPGYSYVEL-KGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ----EHDG 429
            +M+ER +K  PG S ++L +G VH F++GD +H Q  +IY+MLDK++  +Q    E D 
Sbjct: 478 KLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDP 537

Query: 430 TKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKI 489
           ++     + EE       HSEKLAI FG+INTSPGT I ++KNLR+C DCH   KL+S++
Sbjct: 538 SQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQV 597

Query: 490 VDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +R+ IVRD  R+HHF++G CSCKD+W
Sbjct: 598 YNREIIVRDRIRYHHFRNGACSCKDFW 624



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 125/289 (43%), Gaps = 30/289 (10%)

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDY-----GRKLFDQVPEKGLITWNAMISGY 123
            H + ++ G   D  +   L+  Y    +  Y       ++FD V +  +  WN MI   
Sbjct: 74  AHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVC 133

Query: 124 AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP 183
            +N      + LY EM      P+  T+  VL +C+  G  + G++V   +  +G G + 
Sbjct: 134 IENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDG 193

Query: 184 FLNNALINMYARCGNLKKARAIFDG---------MPRKTVVSWTAIIGGYGIHGHGEVAV 234
            + ++ I MYA  G L +AR I D          MP +               G    A+
Sbjct: 194 HILSSAIRMYASFGRLVEARRILDDKGGEVDAVCMPDRK--------------GCFMEAL 239

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
           ++F +M K  IRP      SVLSAC++ G  D+G  + +    +  +Q      T +VD+
Sbjct: 240 EIFHQMQKEKIRPRKFVLPSVLSACANLGALDQG-RWIHTYAKRNSIQLDGVLGTSLVDM 298

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
             + G+++ A E+ E M    + + W A++G   +H   E A   F K+
Sbjct: 299 YAKCGRIDLAWEVFEKM-SNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM 346


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/518 (38%), Positives = 309/518 (59%), Gaps = 17/518 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N+++  Y+ +   S+A+ L+ +M  +G+ ++  T+  +L    +   L  G+  H  
Sbjct: 206 VSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAK 265

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYG-RKLFDQVPEKGLITWNAMISGYA-QNGLAT 130
            +K G   +  VG+ L+ +Y KCG      RK+FD++    L+ WN MISGY+    L+ 
Sbjct: 266 LIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSD 325

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF-LNNAL 189
             LE +R+++ +G  PD  + V V+S+C+++ + S G +V          SN   +NNAL
Sbjct: 326 EALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNAL 385

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           I MY++CGNL+ A+ +FD MP    VS+ ++I GY  HG G  ++ LF  ML+ G  P  
Sbjct: 386 IAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTN 445

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
             F+SVL+AC+H G  + G  YF  MK K+G++P   H++CM+DLLGRAG+L+EA  LIE
Sbjct: 446 ITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIE 505

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDG 369
           ++  +P    W ALLGAC+IH NVELA  A  ++++L+P+N   YV+L+NIYS+   L  
Sbjct: 506 TIPFDPGFFFWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQD 565

Query: 370 IMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE--- 426
              VR +MR+R +KK PG S++E+  R+H+F+  D  H    +I   L+++   +++   
Sbjct: 566 AASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEYLEEMMRKIKKVGY 625

Query: 427 --------HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGD 478
                     G  R  Q+  E  L     HSEKLA++FG+++T  G  I+V KNLRIC D
Sbjct: 626 TPEVRSALVGGDDRVWQREEELRLGH---HSEKLAVSFGLMSTREGEPILVFKNLRICVD 682

Query: 479 CHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           CH  IK +S++V R+  VRD+ RFH FK G CSC  YW
Sbjct: 683 CHNAIKYISEVVKREITVRDSHRFHCFKDGQCSCGGYW 720



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/406 (25%), Positives = 197/406 (48%), Gaps = 16/406 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPIC-VD 59
           +FDE  +    +V YN LI+ Y        A  LF +MRE  ++++  T+  ++  C ++
Sbjct: 96  LFDEMPQPD--SVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITACGIN 153

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE-KGLITWNA 118
            G   L    H + V  GLD   SVGN L+T Y K G +   R++F  + E +  ++WN+
Sbjct: 154 VG---LIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNS 210

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           M+  Y Q+   +  LELY EM   G+  D  T   VL++  ++     GL+   ++  +G
Sbjct: 211 MVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSG 270

Query: 179 FGSNPFLNNALINMYARCGN-LKKARAIFDGMPRKTVVSWTAIIGGYGIHGH-GEVAVQL 236
           +  N  + + LI++Y++CG  +   R +FD +    +V W  +I GY ++    + A++ 
Sbjct: 271 YHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALEC 330

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY-TCMVDLL 295
           F ++   G RPD  + V V+SACS+     +G +  +G+  K  +          ++ + 
Sbjct: 331 FRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQ-VHGLALKLDIPSNRISVNNALIAMY 389

Query: 296 GRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKL--EPMNTGY 353
            + G L +A  L ++M  E +   + +++     H     +   F +++++   P N  +
Sbjct: 390 SKCGNLRDAKTLFDTM-PEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITF 448

Query: 354 YVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGY--SYVELKGRV 397
             +L+      R  DG +   MM ++  ++ + G+    ++L GR 
Sbjct: 449 ISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRA 494



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 122/253 (48%), Gaps = 12/253 (4%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L++ Y K   V+   +LFD++P+   +++N +I+ YA+ G      +L+ EM+   + 
Sbjct: 78  NTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLD 137

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA----NGFGSNPFLNNALINMYARCGNLKK 201
            D  T  G++++C       + + + +Q+ A     G  S   + NALI  Y++ G LK+
Sbjct: 138 MDGFTLSGIITACG------INVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKE 191

Query: 202 ARAIFDGMPR-KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
           AR IF  +   +  VSW +++  Y  H  G  A++L+ EM   G+  D     SVL+A +
Sbjct: 192 ARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFT 251

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320
           +      GL+ F+    K G        + ++DL  + G        +   +  PD  +W
Sbjct: 252 NVQDLLGGLQ-FHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLW 310

Query: 321 GALLGACKIHKNV 333
             ++    +++++
Sbjct: 311 NTMISGYSLYEDL 323



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 3/150 (2%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           N F  N LI+ YA+   ++ A  +FD MP+   VS+  +I  Y   G  + A QLF EM 
Sbjct: 73  NVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMR 132

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301
           ++ +  DG     +++AC   G+    +   + +    GL         ++    + G L
Sbjct: 133 EAFLDMDGFTLSGIITAC---GINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFL 189

Query: 302 NEALELIESMLVEPDGAVWGALLGACKIHK 331
            EA  +   +  + D   W +++ A   H+
Sbjct: 190 KEARRIFHWLSEDRDEVSWNSMVVAYMQHR 219



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 4/99 (4%)

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           ++ +L+N  + +Y++C  L  AR +FD      V S+  +I  Y    + EVA QLFDEM
Sbjct: 41  TSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEM 100

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279
            +    PD  ++ ++++A +  G T    + F  M+  +
Sbjct: 101 PQ----PDSVSYNTLIAAYARRGDTQPAFQLFLEMREAF 135



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 62/117 (52%), Gaps = 10/117 (8%)

Query: 10  HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPIC-----VDPGYLW 64
           H TV YN++I+GY  + +  +++ LF +M E G    ++T + +L  C     V+ G ++
Sbjct: 408 HNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIY 467

Query: 65  LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP-EKGLITWNAMI 120
             M    +  KFG++ +    +C++ +  + G +    +L + +P + G   W+A++
Sbjct: 468 FNM----MKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWSALL 520


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/540 (35%), Positives = 313/540 (57%), Gaps = 36/540 (6%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + + +LI+ Y   +   EAV  F  M   G+  + VT++ +L  C     L LG   H +
Sbjct: 205 ISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLL 264

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGS--------------------------------VDY 100
             + G+    ++   L+ MY KCG                                 VD 
Sbjct: 265 VEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDV 324

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160
            R LFD++  + +IT+N+M++GY  +G     L L+  M+   +  D  T V +L++CA 
Sbjct: 325 ARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACAS 384

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           LGA   G  +   I+     ++ +L  AL++MY +CG + +A  +F  M ++ V +WTA+
Sbjct: 385 LGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAM 444

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           I G   +G G+ A++ F +M   G +P+  ++++VL+ACSH+ L ++G  YF  M+  Y 
Sbjct: 445 IAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYN 504

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           + P  EHY CM+DLLGR+G L+EA++L+++M ++P+  +W ++L AC++HK+++LA+ A 
Sbjct: 505 IHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAA 564

Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400
             ++KLEP   G YV L NIY ++R  +   ++RM+M ER++KK  GYS + + G+VH F
Sbjct: 565 EHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHKF 624

Query: 401 MVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQ----KNSEEHLNDTEVHSEKLAIAF 456
           +V D++H + +EI  ML+++ + ++    +  + Q     + EE       HSEKLAIAF
Sbjct: 625 VVSDKSHPRILEIIAMLEEISHRLKSLGYSPLTSQITVDVDEEEKEQALLAHSEKLAIAF 684

Query: 457 GIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           G+IN +P   + + KNLR+C DCH  IKL+S++ +R+ IVRD +RFHHF+ G CSC D+W
Sbjct: 685 GLINLAPNLPVHIRKNLRVCEDCHSAIKLISRLWNREIIVRDRSRFHHFREGTCSCNDFW 744



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 155/353 (43%), Gaps = 48/353 (13%)

Query: 34  LFGKMREQGVEINSVTMLCLLP---ICVDPGYLWLGMCCHCICVKFGLDLDFS-VGNCLM 89
           LF +MR  GV  +  T   L         P  L L    H  C++  L      V N L+
Sbjct: 90  LFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLI 149

Query: 90  TMYVKCGSVDYGRKLFD-------------------------------QVPEKGLITWNA 118
            MY++ G     R+ FD                               Q P + +I+W +
Sbjct: 150 HMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTS 209

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           +I+ Y++   A   +  ++ M S G+ PD VT + VLS+CA L    +G  +   ++  G
Sbjct: 210 LIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKG 269

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGM---PRKTVVSWTAIIGGYGIHGHGEVAVQ 235
             ++  L  ALI+MYA+CG+   A+ +FD +   PR    SW AII GY  HGH +VA  
Sbjct: 270 MPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQ--SWNAIIDGYCKHGHVDVARS 327

Query: 236 LFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295
           LFDEM    +R D   F S+++   H+G   + L  F  M+ ++ L+        ++   
Sbjct: 328 LFDEM---EVR-DIITFNSMMTGYIHSGQLREALLLFMSMR-RHDLRVDNFTVVNLLTAC 382

Query: 296 GRAGQLNEALEL---IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345
              G L +   L   IE  LVE D  +  ALL        V+ A + F ++ K
Sbjct: 383 ASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGK 435



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 124/298 (41%), Gaps = 49/298 (16%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATH-VLELYREMKSLGVCPDAVTFVGVLSSC 158
           Y   LFD++P    + ++  +   ++ G   H    L+R M+  GV PD  TF   L  C
Sbjct: 55  YALHLFDRMPPSTFL-FDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTF-HFLFKC 112

Query: 159 AHLGAHSVGLEVEQQIQANGF-----GSNPFLNNALINMYARCGNLKKARAIFD------ 207
           +   +    L +   + A         + PF++N+LI+MY R G    AR  FD      
Sbjct: 113 SSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKD 172

Query: 208 --------------GM-----------PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
                         GM           P + V+SWT++I  Y        AV  F  ML 
Sbjct: 173 AVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLS 232

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGL-EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301
            GI PD    ++VLSAC  A L D  L    + +  + G+         ++D+  + G  
Sbjct: 233 HGIAPDEVTVIAVLSAC--AKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDF 290

Query: 302 NEALELIESMLVEPDGAVWGALL-GACKIHKNVELA-----ELAFGKVIKLEPMNTGY 353
             A ++ +++   P    W A++ G CK H +V++A     E+    +I    M TGY
Sbjct: 291 GHAQQVFDALGRGPRPQSWNAIIDGYCK-HGHVDVARSLFDEMEVRDIITFNSMMTGY 347


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/513 (37%), Positives = 298/513 (58%), Gaps = 5/513 (0%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           ST     + +LI+GY  N +  EA+ L   M     + N  T   LL          +G 
Sbjct: 2   STRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIGE 61

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
             H + VK+    D  VG+ L+ MY +CG +D    +FDQ+  K  ++WNA+I+G+A+ G
Sbjct: 62  QIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKG 121

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
                L ++ EM+  G      T+  V S+ A +GA   G  V   +  +G   + F+ N
Sbjct: 122 DGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGN 181

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
            +++MYA+ G++  AR +FD + +K +V+W +++  +  +G G  AV  F+EM K G+  
Sbjct: 182 TILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHL 241

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           +   F+S+L+ACSH GL  +G +YF  MK ++ L+P  +HY  +VDLLGRAG LN+AL  
Sbjct: 242 NQITFLSILTACSHGGLVKEGKQYFDMMK-EHNLEPEIDHYVTVVDLLGRAGLLNDALVF 300

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNL 367
           I  M ++P  AVWGALLG+C++HKN ++ + A   V +L+P +TG  VLL NIY+     
Sbjct: 301 IFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQW 360

Query: 368 DGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH 427
           D   RVR MM+   +KK+P  S+VE++  VH+F+  D  H ++ EIY+  +++   +++ 
Sbjct: 361 DAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKA 420

Query: 428 DGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFI 483
                +D      + +E     + HSEK+A+AF +IN   G  I +MKN+RICGDCH   
Sbjct: 421 GYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAF 480

Query: 484 KLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           + +SK+ +R+ +VRD  RFHHF SG CSC DYW
Sbjct: 481 RYISKVFEREIVVRDTNRFHHFSSGSCSCGDYW 513



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 70/154 (45%), Gaps = 4/154 (2%)

Query: 209 MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
           M  + + SWT++I GY  +   + A+ L   ML+   +P+G  F S+L A   +  +  G
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIG 60

Query: 269 LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACK 328
            E  + +  KY         + ++D+  R G+++ A+ + +  L   +G  W AL+    
Sbjct: 61  -EQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQ-LESKNGVSWNALIAGFA 118

Query: 329 IHKNVELAELAFGKVIK--LEPMNTGYYVLLSNI 360
              + E   L F ++ +   E  +  Y  + S I
Sbjct: 119 RKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAI 152


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/500 (40%), Positives = 298/500 (59%), Gaps = 20/500 (4%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +N LI GY        A SL+ +MR  G VE ++ T   L+        + LG   H + 
Sbjct: 88  WNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVV 147

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           ++ G      V N L+ +Y  CG V    K+FD++PEK L+ WN++I+G+A+NG     L
Sbjct: 148 IRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEAL 207

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
            LY EM S G+ PD  T V +LS+CA +GA ++G  V   +   G   N   +N L+++Y
Sbjct: 208 ALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLY 267

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS-GIRPDGTAF 252
           ARCG +++A+ +FD M  K  VSWT++I G  ++G G+ A++LF  M  + G+ P    F
Sbjct: 268 ARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITF 327

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           V +L ACSH G+  +G EYF  M+ +Y ++P  EH+ CMVDLL RAGQ+ +A E I+SM 
Sbjct: 328 VGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMP 387

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           ++P+  +W  LLGAC +H + +LAE A  ++++LEP ++G YVLLSN+Y+  +    + +
Sbjct: 388 MQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQK 447

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           +R  M    +KK PG+S VE+  RVH F++GD++H Q+  IY  L       +E  G  R
Sbjct: 448 IRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKL-------KEMTGRLR 500

Query: 433 SD-----------QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHL 481
           S+               EE  N    HSEK+AIAF +I+T   + I V+KNLR+C DCHL
Sbjct: 501 SEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHL 560

Query: 482 FIKLVSKIVDRQFIVRDATR 501
            IKLVSK+ +R+ +VRD +R
Sbjct: 561 AIKLVSKVYNREIVVRDRSR 580



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++I+G+  N    EA++L+ +M  +G++ +  T++ LL  C   G L LG   H  
Sbjct: 188 VAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVY 247

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K GL  +    N L+ +Y +CG V+  + LFD++ +K  ++W ++I G A NG     
Sbjct: 248 MIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEA 307

Query: 133 LELYREMKSL-GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--AL 189
           +EL++ M+S  G+ P  +TFVG+L +C+H G    G E  ++++   +   P + +   +
Sbjct: 308 IELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREE-YKIEPRIEHFGCM 366

Query: 190 INMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVA 233
           +++ AR G +KKA      MP +  VV W  ++G   +HG  ++A
Sbjct: 367 VDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLA 411


>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/524 (38%), Positives = 298/524 (56%), Gaps = 24/524 (4%)

Query: 15  YNALISGYVLNS-LVSEAVSLFGK-MREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           YN LIS    +S  +  A SL+   +  + ++ NS T   L   C    +L  G   H  
Sbjct: 70  YNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACASHPWLQHGPPLHAH 129

Query: 73  CVKF-GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
            +KF     D  V N L+  Y K G +   R LFDQ+ E  L TWN M++ YAQ+  A+H
Sbjct: 130 VLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAAYAQS--ASH 187

Query: 132 V---------------LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
           V               L L+ +M+   + P+ VT V ++S+C++LGA S G      +  
Sbjct: 188 VSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGALSQGAWAHGYVLR 247

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
           N    N F+  AL++MY++CG L  A  +FD +  +    + A+IGG+ +HGHG  A++L
Sbjct: 248 NNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAVHGHGNQALEL 307

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           +  M    + PDG   V  + ACSH GL ++GLE F  MK  +G++P  EHY C++DLLG
Sbjct: 308 YRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIFESMKGVHGMEPKLEHYGCLIDLLG 367

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356
           RAG+L EA E ++ M ++P+  +W +LLGA K+H N+E+ E A   +I+LEP  +G YVL
Sbjct: 368 RAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHGNLEMGEAALKHLIELEPETSGNYVL 427

Query: 357 LSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRM 416
           LSN+Y+     + + RVRM+M++  + K PG+S VE+ G +H F+ GD+ H  + EIY  
Sbjct: 428 LSNMYASIGRWNDVKRVRMLMKDHGVDKLPGFSLVEINGAMHEFLTGDKAHPFSKEIYSK 487

Query: 417 LDKLENLVQEHDGTKRSDQKNSEEHLNDTE----VHSEKLAIAFGIINTSPGTEIVVMKN 472
           + ++   + E+    R+ +   +    D E     HSE+LAIAF +I +S    I ++KN
Sbjct: 488 IGEINRRLLEYGHKPRTSEVLFDVEEEDKEDFLSYHSERLAIAFALIASSSSMPIRIIKN 547

Query: 473 LRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           LR+CGDCH   KL+S    R  IVRD  RFHHFK G CSC DYW
Sbjct: 548 LRVCGDCHAITKLISAAYQRDIIVRDRNRFHHFKDGSCSCLDYW 591


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/543 (37%), Positives = 310/543 (57%), Gaps = 39/543 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +N++ISG+        A+ +F KM R+  +  +  T+  +L  C +   L +G   H 
Sbjct: 244 VTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHS 303

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQ------------------------ 107
             V  G D+   V N L++MY +CG V+  R+L +Q                        
Sbjct: 304 HIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDM 363

Query: 108 ---------VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC 158
                    + ++ ++ W AMI GY Q+G     + L+R M   G  P++ T   +LS  
Sbjct: 364 NQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVA 423

Query: 159 AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP-RKTVVSW 217
           + L + S G ++      +G   +  ++NALI MYA+ GN+  A   FD +   +  VSW
Sbjct: 424 SSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSW 483

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
           T++I     HGH E A++LF+ ML  G+RPD   +V V SAC+HAGL ++G +YF  MK+
Sbjct: 484 TSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKD 543

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
              + P   HY CMVDL GRAG L EA E IE M +EPD   WG+LL AC++HKN++L +
Sbjct: 544 VDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGK 603

Query: 338 LAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRV 397
           +A  +++ LEP N+G Y  L+N+YS     +   ++R  M++ R+KK+ G+S++E+K +V
Sbjct: 604 VAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKV 663

Query: 398 HLFMVGDRNHHQTVEIYRMLDKLENLVQE--HDGTKRSDQKNSEEHLNDTEV--HSEKLA 453
           H+F V D  H +  EIY  + K+ + +++  +     S   + EE + +  +  HSEKLA
Sbjct: 664 HVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLA 723

Query: 454 IAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCK 513
           IAFG+I+T   T + +MKNLR+C DCH  IK +SK+V R+ IVRD TRFHHFK GFCSC+
Sbjct: 724 IAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCR 783

Query: 514 DYW 516
           DYW
Sbjct: 784 DYW 786



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 164/390 (42%), Gaps = 66/390 (16%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V +  +I GY       +A+ + G M ++G+E    T+  +L        +  G   H 
Sbjct: 111 SVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHS 170

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKC-------------------------------GSVDY 100
             VK GL  + SV N L+ MY KC                               G +D 
Sbjct: 171 FIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDL 230

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM-KSLGVCPDAVTFVGVLSSCA 159
               F+Q+ E+ ++TWN+MISG+ Q G     L+++ +M +   + PD  T   VLS+CA
Sbjct: 231 AMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACA 290

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR---------------- 203
           +L    +G ++   I   GF  +  + NALI+MY+RCG ++ AR                
Sbjct: 291 NLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGF 350

Query: 204 -AIFDG----------------MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
            A+ DG                +  + VV+WTA+I GY  HG    A+ LF  M+  G R
Sbjct: 351 TALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQR 410

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           P+     ++LS  S       G +  +G   K G          ++ +  +AG +  A  
Sbjct: 411 PNSYTLAAMLSVASSLASLSHG-KQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASR 469

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELA 336
             + +  E D   W +++ A   H + E A
Sbjct: 470 AFDLIRCERDTVSWTSMIIALAQHGHAEEA 499



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 143/331 (43%), Gaps = 50/331 (15%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N +++ Y K G +D   + FDQ+P++  ++W  MI GY   G     + +  +M   G+ 
Sbjct: 84  NTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIE 143

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P   T   VL+S A       G +V   I   G   N  ++N+L+NMYA+CG+   A+ +
Sbjct: 144 PTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFV 203

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           FD M  + + SW A+I  +   G  ++A+  F++M +  I      + S++S  +  G  
Sbjct: 204 FDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDI----VTWNSMISGFNQRGYD 259

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
            + L+ F  M                                +   L+ PD     ++L 
Sbjct: 260 LRALDIFSKM--------------------------------LRDSLLSPDRFTLASVLS 287

Query: 326 ACKIHKNVELAELAFGKVIKLEPMNTGYY---VLLSNIYSEARNLDGIMRVRMMMRERRL 382
           AC       L +L  GK I    + TG+    ++L+ + S      G+   R ++ +R  
Sbjct: 288 AC-----ANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGT 342

Query: 383 K--KDPGYSYVELKGRVHLFMVGDRNHHQTV 411
           K  K  G++ + L G + L   GD N  + +
Sbjct: 343 KDLKIEGFTAL-LDGYIKL---GDMNQAKNI 369



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/281 (19%), Positives = 108/281 (38%), Gaps = 45/281 (16%)

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLE--------VEQQIQANGFGSNPFLNNALINMYARC 196
            P  ++   +L  C +L   SV           V  ++  +G   + +L N L+N+Y++ 
Sbjct: 3   APVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKT 62

Query: 197 GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE----------------- 239
           G    AR +FD MP +T  SW  ++  Y   G  +   + FD+                 
Sbjct: 63  GYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYK 122

Query: 240 --------------MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
                         M+K GI P      +VL++ +     + G +  +    K GL+   
Sbjct: 123 NIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETG-KKVHSFIVKLGLRGNV 181

Query: 286 EHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345
                ++++  + G    A  + + M+V  D + W A++    +H  V   +LA  +  +
Sbjct: 182 SVSNSLLNMYAKCGDPMMAKFVFDRMVVR-DISSWNAMIA---LHMQVGQMDLAMAQFEQ 237

Query: 346 LEPMN-TGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKD 385
           +   +   +  ++S       +L  +     M+R+  L  D
Sbjct: 238 MAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPD 278


>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 740

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/527 (38%), Positives = 307/527 (58%), Gaps = 25/527 (4%)

Query: 15  YNALISGYVLNSLVSE---AVSLFGK-MREQGVEINSVTMLCLLPICV-DPGYLWLGMCC 69
           YN LIS  +  +  ++   A SL+ K +  + ++ NS T   L   C  +  +   G   
Sbjct: 214 YNTLISSLINQTNQNQIHLAFSLYNKILTNKNLQPNSFTFPSLFKACCSNQSWFHYGPLL 273

Query: 70  HCICVKF-GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQN-- 126
           H   +KF     D  V   L+  Y K G +   R +FD++ E  L TWN +++ YA++  
Sbjct: 274 HTHVLKFLQPPFDNFVQASLLNFYAKYGKMCVSRYIFDRINEPDLATWNVILNAYARSSS 333

Query: 127 -----------GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175
                        +   L L+R+M+ +G+ P+ VT V ++S+C++LGA S G  V   + 
Sbjct: 334 YHSYSNSFDDADFSLESLYLFRDMQVIGIRPNEVTIVALISACSNLGAVSQGFWVHCFVL 393

Query: 176 ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIHGHGEVA 233
            N    N F+  A ++MY++CG L  A  +FD MP   +    +TA+IGG+ +HG+G  A
Sbjct: 394 RNKIKMNRFVGTAFVDMYSKCGCLNLACQVFDKMPENDRDSFCYTAMIGGFAVHGYGNQA 453

Query: 234 VQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293
           ++L+ +M   G+ PD   FV  + ACSH GL ++GLE F  MK  +G++P  EHY C++D
Sbjct: 454 LELYRKMKFKGLVPDSATFVVTMFACSHVGLVEEGLEIFKSMKEVHGVEPKLEHYGCLID 513

Query: 294 LLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGY 353
           LLGRAG+L EA E +  M ++P+  +W +LLGA +IH N+ + E+A  K+I+LEP  +G 
Sbjct: 514 LLGRAGRLKEAEEWLADMPMKPNAVLWRSLLGAARIHGNLGVGEVALTKLIELEPETSGN 573

Query: 354 YVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEI 413
           YVLLSN+Y+    ++ + RVR +M+   + K PG+S VE+KG +H F+ GDR+H  + EI
Sbjct: 574 YVLLSNMYASVGRVNDVKRVRKLMKHHGVNKLPGFSLVEIKGAMHEFLTGDRSHPFSKEI 633

Query: 414 YRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTE----VHSEKLAIAFGIINTSPGTEIVV 469
           Y  + ++ + ++E+    R+ +   +    D E     HSE+LAIAF +I +     I +
Sbjct: 634 YLKIAEINSRLEEYGHKARTSEALFDLEEEDKEGVLSYHSERLAIAFALIASPSSLAIRI 693

Query: 470 MKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +KNLR+CGDCH F KL+S    R+ IVRD  RFHHFK G CSC DYW
Sbjct: 694 IKNLRVCGDCHAFTKLISVAYHREIIVRDRNRFHHFKDGSCSCLDYW 740


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/528 (38%), Positives = 291/528 (55%), Gaps = 50/528 (9%)

Query: 31  AVSLFGKMREQGVEINSVTMLCLLPIC--VDPGYLWLGMCCHCICVKFGLDLDFSVGNCL 88
           A++L   M  QG+   + T+   LP C  + PG        H    K  L  D  V   L
Sbjct: 373 ALALLSDMLAQGLLPTAHTLSASLPACRGLSPG-----RALHGYAFKLALAGDSYVATAL 427

Query: 89  MTMYVKCG--------------------------------SVDYGRKLFDQVPEKGLITW 116
           + MY + G                                ++D  R LFD +P K  + W
Sbjct: 428 LGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCW 487

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ- 175
           NAMI GY Q+G     L L+R M   GV PD VT V VLS+ A LG    G  +   ++ 
Sbjct: 488 NAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKN 547

Query: 176 ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQ 235
           +     +  +  ALI+MY +CG+L  A  +F G+  K +V W A+I GY +HG    A++
Sbjct: 548 SRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALE 607

Query: 236 LFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295
           +F +  + G+ P    F+ +L+ACSH+G+ ++G E+F  M+ +YG+ P  EHY CMVDLL
Sbjct: 608 MFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMVDLL 667

Query: 296 GRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV 355
           GRAG + EA  L++SM + PD  +W +LL AC++HKN+ L +     ++     N+G Y+
Sbjct: 668 GRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGLANSGMYI 727

Query: 356 LLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYR 415
           LLSNIY+   N   + RVR MM+   ++K+PG S +E+   V+ F+ GD +H +T EIY 
Sbjct: 728 LLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREVYEFVAGDMSHPRTDEIYV 787

Query: 416 MLDKLENLVQEHDGTKRS-------DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIV 468
           MLDK+  LV+EH    ++       D+   E+ L    VHSEKLA+AFG+I+T PG  I 
Sbjct: 788 MLDKMNGLVKEHGHVPQTELVLHDLDEATKEKAL---AVHSEKLALAFGLISTQPGATIK 844

Query: 469 VMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           ++KNLR C DCH  +KL+S+I  R+ + RD  RFHHF  G CSC DYW
Sbjct: 845 IVKNLRACSDCHAVLKLISRITGRKIVFRDRNRFHHFVDGSCSCGDYW 892



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 127/241 (52%), Gaps = 5/241 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC- 71
           VC+NA+I GY  +   +EA+ LF +M   GVE + VT++ +L      G +  G   H  
Sbjct: 485 VCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSY 544

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           +     + L   VG  L+ MY KCGS+     +F  + +K ++ WNAMI+GYA +G +  
Sbjct: 545 VKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRK 604

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--AL 189
            LE++ + +  G+ P  +TF+G+L++C+H G    G E  Q ++   +G +P + +   +
Sbjct: 605 ALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMERE-YGIDPKIEHYGCM 663

Query: 190 INMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           +++  R G +K+A  +   M      V W +++    +H +  +  Q+ D ++  G+   
Sbjct: 664 VDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGLANS 723

Query: 249 G 249
           G
Sbjct: 724 G 724



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 122/297 (41%), Gaps = 38/297 (12%)

Query: 70  HCICVKFGL--DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
           H   ++ GL    D +V   L   Y   G +D    L  +  +   I + + I  ++  G
Sbjct: 309 HAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLSLALLRRTRDPTAIFYTSAIHAHSSRG 368

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
                L L  +M + G+ P A T    L +C  L   S G  +           + ++  
Sbjct: 369 HRLPALALLSDMLAQGLLPTAHTLSASLPACRGL---SPGRALHGYAFKLALAGDSYVAT 425

Query: 188 ALINMYARCGN--------------------------------LKKARAIFDGMPRKTVV 215
           AL+ MYAR G+                                L  AR++FDG+P K  V
Sbjct: 426 ALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFV 485

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
            W A+I GY  HG    A++LF  ML SG+ PD    V VLSA +  G  + G      +
Sbjct: 486 CWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYV 545

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKN 332
           KN   +Q      T ++D+  + G L +A+++    + + D  VW A++    +H +
Sbjct: 546 KNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHG-IGDKDIVVWNAMINGYAMHGD 601


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 211/508 (41%), Positives = 292/508 (57%), Gaps = 15/508 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N +I+GY     + +A  LF  M E+  E++   M+     C D     L    H    
Sbjct: 158 WNTMITGYARRGEMEKARELFYSMMEKN-EVSWNAMISGYIECGD-----LEKASHFF-- 209

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLF-DQVPEKGLITWNAMISGYAQNGLATHVL 133
           K            ++T Y+K   V+    +F D    K L+TWNAMISGY +N      L
Sbjct: 210 KVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGL 269

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
           +L+R M   G+ P++      L  C+ L A  +G ++ Q +  +   ++     +LI+MY
Sbjct: 270 KLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMY 329

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
            +CG L  A  +F+ M +K VV+W A+I GY  HG+ + A+ LF EM+ + IRPD   FV
Sbjct: 330 CKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFV 389

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           +VL AC+HAGL + G+ YF  M   Y ++P P+HYTCMVDLLGRAG+L EAL+LI SM  
Sbjct: 390 AVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPF 449

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
            P  AV+G LLGAC++HKNVELAE A  K+++L   N   YV L+NIY+     + + RV
Sbjct: 450 RPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARV 509

Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS 433
           R  M+E  + K PGYS++E++ +VH F   DR H +   I++ L K      +  G K  
Sbjct: 510 RKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKL-KELEKKMKLAGYKPE 568

Query: 434 DQ---KNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
            +    N EE   +  +  HSEKLA+AFG I    G++I V KNLRICGDCH  IK +S+
Sbjct: 569 LEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISE 628

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           I  R+ IVRD TRFHHFK G CSC DYW
Sbjct: 629 IEKREIIVRDTTRFHHFKDGSCSCGDYW 656



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 123/232 (53%), Gaps = 2/232 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+ISGYV NS   + + LF  M E+G+  NS  +   L  C +   L LG   H I
Sbjct: 250 VTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQI 309

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K  L  D +    L++MY KCG +    KLF+ + +K ++ WNAMISGYAQ+G A   
Sbjct: 310 VSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKA 369

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLE-VEQQIQANGFGSNPFLNNALIN 191
           L L+REM    + PD +TFV VL +C H G  ++G+   E  ++       P     +++
Sbjct: 370 LCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVD 429

Query: 192 MYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
           +  R G L++A  +   MP R     +  ++G   +H + E+A    +++L+
Sbjct: 430 LLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQ 481



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 179/393 (45%), Gaps = 34/393 (8%)

Query: 16  NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLL-PICVDPGYLWLGMCCHCICV 74
           N +I+  V +  +  A+ +F  MR +    N++T   LL  I  DP  +   M  H +  
Sbjct: 65  NKIIARCVRSGDIDGALRVFHGMRAK----NTITWNSLLIGISKDPSRM---MEAHQLFD 117

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           +      FS  N +++ YV+  + +  +  FD++P K   +WN MI+GYA+ G      E
Sbjct: 118 EIPEPDTFSY-NIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARE 176

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN----NALI 190
           L+  M       + V++  ++S     G        + +  ++ F   P        A+I
Sbjct: 177 LFYSMME----KNEVSWNAMISGYIECG--------DLEKASHFFKVAPVRGVVAWTAMI 224

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
             Y +   ++ A A+F  M   K +V+W A+I GY  +   E  ++LF  ML+ GIRP+ 
Sbjct: 225 TGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNS 284

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
           +   S L  CS       G +  + + +K  L       T ++ +  + G+L +A +L E
Sbjct: 285 SGLSSALLGCSELSALQLGRQ-IHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFE 343

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI--KLEP-MNTGYYVLLSNIYSEARN 366
            M  + D   W A++     H N + A   F ++I  K+ P   T   VLL+  ++   N
Sbjct: 344 VM-KKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVN 402

Query: 367 LDGIMRVRMMMRERRLKKDPGY--SYVELKGRV 397
           + G+     M+R+ +++  P +    V+L GR 
Sbjct: 403 I-GMAYFESMVRDYKVEPQPDHYTCMVDLLGRA 434


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/505 (38%), Positives = 294/505 (58%), Gaps = 5/505 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           + +LI+GY  N +  EA+ L   M     + N  T   LL          +G   H + V
Sbjct: 133 WTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTV 192

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K+    D  VG+ L+ MY +CG +D    +FDQ+  K  ++WNA+I+G+A+ G     L 
Sbjct: 193 KYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLL 252

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           ++ EM+  G      T+  V S+ A +GA   G  V   +  +G   + F+ N +++MYA
Sbjct: 253 MFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYA 312

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           + G++  AR +FD + +K VV+W +++  +  +G G  AV  F+EM K G+  +   F+S
Sbjct: 313 KSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLS 372

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           +L+ACSH GL  +G +YF  MK +Y L+P  +HY  +VDLLGRAG LN+AL  I  M ++
Sbjct: 373 ILTACSHGGLVKEGKQYFDMMK-EYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMK 431

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
           P  AVWGALLG+C++HKN ++ + A   V +L+P +TG  VLL NIY+     D   RVR
Sbjct: 432 PTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVR 491

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD 434
            MM+   +KK+P  S+VE++  VH+F+  D  H ++ EIY+  +++   +++      +D
Sbjct: 492 KMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTD 551

Query: 435 ----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIV 490
                 + +E     + HSEK+A+AF +IN   G  I +MKN+RICGDCH   + +SK+ 
Sbjct: 552 YVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVF 611

Query: 491 DRQFIVRDATRFHHFKSGFCSCKDY 515
            R+ +VRD  RFHHF SG CSC DY
Sbjct: 612 KREIVVRDTNRFHHFSSGSCSCGDY 636



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 125/241 (51%), Gaps = 2/241 (0%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+ +Y KCG+V   R++FD +P + + +W ++I+GYAQN +    L L   M      
Sbjct: 103 NSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFK 162

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P+  TF  +L +     +  +G ++        +  + ++ +AL++MYARCG +  A A+
Sbjct: 163 PNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAV 222

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           FD +  K  VSW A+I G+   G GE  + +F EM ++G       + SV SA +  G  
Sbjct: 223 FDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGAL 282

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           ++G ++ +    K G +        ++D+  ++G + +A ++ +  + + D   W ++L 
Sbjct: 283 EQG-KWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDR-VDKKDVVTWNSMLT 340

Query: 326 A 326
           A
Sbjct: 341 A 341



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 119/241 (49%), Gaps = 7/241 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NALI+G+         + +F +M+  G E    T   +       G L  G   H  
Sbjct: 232 VSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAH 291

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G  L   VGN ++ MY K GS+   RK+FD+V +K ++TWN+M++ +AQ GL    
Sbjct: 292 MIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREA 351

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           +  + EM+  GV  + +TF+ +L++C+H G    G +    ++   +   P +++   ++
Sbjct: 352 VTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKE--YNLEPEIDHYVTVV 409

Query: 191 NMYARCGNLKKARAIFDGMPRK-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++  R G L  A      MP K T   W A++G   +H + ++     D + +  + PD 
Sbjct: 410 DLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFE--LDPDD 467

Query: 250 T 250
           T
Sbjct: 468 T 468



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 103/209 (49%), Gaps = 4/209 (1%)

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
           ++++CA   +      +   +  + F  + FL+N+LI++Y +CG +  AR +FDGMP + 
Sbjct: 70  LITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARD 129

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
           + SWT++I GY  +   + A+ L   ML+   +P+G  F S+L A   +  +  G E  +
Sbjct: 130 MCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIG-EQIH 188

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNV 333
            +  KY         + ++D+  R G+++ A+ + +  L   +G  W AL+       + 
Sbjct: 189 ALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQ-LESKNGVSWNALIAGFARKGDG 247

Query: 334 ELAELAFGKVIK--LEPMNTGYYVLLSNI 360
           E   L F ++ +   E  +  Y  + S I
Sbjct: 248 ETTLLMFAEMQRNGFEATHFTYSSVFSAI 276


>gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920
 gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/510 (37%), Positives = 304/510 (59%), Gaps = 5/510 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T  +N +I GYV      EA+  + +M ++G E ++ T  CLL  C     +  G   H 
Sbjct: 97  TFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHG 156

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              K GL+ D  V N L+ MY +CG ++    +F+++  K   +W++M+S  A  G+ + 
Sbjct: 157 QVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSE 216

Query: 132 VLELYREMKS-LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
            L L+R M S   +  +    V  L +CA+ GA ++G+ +   +  N    N  +  +L+
Sbjct: 217 CLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLV 276

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MY +CG L KA  IF  M ++  ++++A+I G  +HG GE A+++F +M+K G+ PD  
Sbjct: 277 DMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHV 336

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            +VSVL+ACSH+GL  +G   F  M  +  ++P  EHY C+VDLLGRAG L EALE I+S
Sbjct: 337 VYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQS 396

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           + +E +  +W   L  C++ +N+EL ++A  +++KL   N G Y+L+SN+YS+ +  D +
Sbjct: 397 IPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDDV 456

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ----E 426
            R R  +  + LK+ PG+S VELKG+ H F+  DR+H +  EIY+ML ++E  ++     
Sbjct: 457 ARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQLKFEGYS 516

Query: 427 HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
            D T+     + EE     + HS+K+AIAFG++ T PG+ I + +NLR+C DCH + K +
Sbjct: 517 PDLTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSIIKIARNLRMCSDCHTYTKKI 576

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           S I +R+ +VRD  RFH FK G CSCKDYW
Sbjct: 577 SMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 132/266 (49%), Gaps = 7/266 (2%)

Query: 97  SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS 156
           S++Y   +F  + +     +N MI GY         L  Y EM   G  PD  T+  +L 
Sbjct: 81  SMNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLK 140

Query: 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS 216
           +C  L +   G ++  Q+   G  ++ F+ N+LINMY RCG ++ + A+F+ +  KT  S
Sbjct: 141 ACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAAS 200

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEML-KSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYG 274
           W++++      G     + LF  M  ++ ++ + +  VS L AC++ G  + G+  + + 
Sbjct: 201 WSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFL 260

Query: 275 MKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVE 334
           ++N   L    +  T +VD+  + G L++AL + + M  + +   + A++    +H   E
Sbjct: 261 LRNISELNIIVQ--TSLVDMYVKCGCLDKALHIFQKM-EKRNNLTYSAMISGLALHGEGE 317

Query: 335 LAELAFGKVIK--LEPMNTGYYVLLS 358
            A   F K+IK  LEP +  Y  +L+
Sbjct: 318 SALRMFSKMIKEGLEPDHVVYVSVLN 343


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/511 (39%), Positives = 287/511 (56%), Gaps = 38/511 (7%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++I G V   L  EA+SLF  M  + ++I+  T   +L        +   M  H +
Sbjct: 307 VSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSL 366

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK G +    V N L+ MY K G  DY   +F+++ +K +I+W ++++G   NG     
Sbjct: 367 IVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEA 426

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+ EM+ +G+ PD +    VLS+CA L     G +V      +G GS+  ++N+L++M
Sbjct: 427 LRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSM 486

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG ++ A  +FD M  + V++WTA+I GY  +G G                      
Sbjct: 487 YAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGR--------------------- 525

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
                   HAGL + G  YF  M+  YG++PGPEHY CM+DLLGR+G+L EA EL+  M 
Sbjct: 526 -------DHAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMA 578

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           V+PD  VW ALL AC++H NVEL E A   + +LEP N   YVLLSN+YS A   +   +
Sbjct: 579 VQPDATVWKALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAK 638

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
            R +M+ R + K+PG S++E+  +VH FM  DR+H +T EIY  +D++  L++E      
Sbjct: 639 TRRLMKLRGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKE---AGY 695

Query: 433 SDQKNSEEHLNDTE-------VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
               N   H  D E        HSEKLA+AFG++   PG  I + KNLRICGDCH  +K 
Sbjct: 696 VPDMNFALHDMDEEGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKY 755

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           VS +  R  I+RD+  FHHF+ G CSC DYW
Sbjct: 756 VSGVFHRHVILRDSNCFHHFREGACSCSDYW 786



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 157/316 (49%), Gaps = 3/316 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +++LISGY       EA+ LF +M+ +G   N  T   +L +C     L  G   H  
Sbjct: 104 ITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAH 163

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK-GLITWNAMISGYAQNGLATH 131
            +K   D +  V   L+ MY KC  +     LF+  P+K   + W AM++GY+QNG    
Sbjct: 164 AIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHK 223

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            +E +R+M+  G+  +  TF  +L++C  + A   G +V   I  +GFG+N F+ +AL++
Sbjct: 224 AIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVD 283

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY++CG+L  AR + + M     VSW ++I G    G GE A+ LF  M    ++ D   
Sbjct: 284 MYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFT 343

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           + SVL+ C    +  +     + +  K G +        +VD+  + G  + A ++ E M
Sbjct: 344 YPSVLN-CFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKM 402

Query: 312 LVEPDGAVWGALLGAC 327
             + D   W +L+  C
Sbjct: 403 -TDKDVISWTSLVTGC 417



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 152/312 (48%), Gaps = 2/312 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+++GY  N    +A+  F  MR +G+E N  T   +L  C        G   H  
Sbjct: 206 VLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGC 265

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            V+ G   +  VG+ L+ MY KCG +   R++ + +     ++WN+MI G  + GL    
Sbjct: 266 IVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEA 325

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+R M    +  D  T+  VL+  + +      + V   I   GF +   +NNAL++M
Sbjct: 326 LSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDM 385

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+ G    A  +F+ M  K V+SWT+++ G   +G  E A++LF EM   GI PD    
Sbjct: 386 YAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVI 445

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            +VLSAC+   + + G +       K GL         +V +  + G + +A ++ +SM 
Sbjct: 446 AAVLSACAELTVLEFGKQVHANFL-KSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSME 504

Query: 313 VEPDGAVWGALL 324
           ++ D   W AL+
Sbjct: 505 IQ-DVITWTALI 515



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 151/306 (49%), Gaps = 14/306 (4%)

Query: 79  DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYRE 138
           D D    N ++  Y   G ++  RKLF + P +  ITW+++ISGY + G     LEL+ E
Sbjct: 69  DRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWE 128

Query: 139 MKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG----FGSNPFLNNALINMYA 194
           M+  G  P+  T+  VL  C+      V LE  +QI A+     F SN F+   L++MYA
Sbjct: 129 MQYEGERPNQFTWGSVLRVCSMY----VLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYA 184

Query: 195 RCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
           +C  + +A  +F+  P ++  V WTA++ GY  +G G  A++ F +M   GI  +   F 
Sbjct: 185 KCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFP 244

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           S+L+AC        G +  +G   + G        + +VD+  + G L+ A  ++E+M V
Sbjct: 245 SILTACGSISACGFGAQ-VHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEV 303

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS--NIYSEARNLDGIM 371
           + D   W +++  C + + +    L+  +++ L  M    +   S  N +S   ++   M
Sbjct: 304 D-DPVSWNSMIVGC-VRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAM 361

Query: 372 RVRMMM 377
            V  ++
Sbjct: 362 SVHSLI 367



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 34/171 (19%)

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIG----------------------- 222
           +N +++  ++CG +  AR +FD MP +   SW  +IG                       
Sbjct: 44  SNWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSC 103

Query: 223 --------GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFY 273
                   GY  +G    A++LF EM   G RP+   + SVL  CS   L +KG + + +
Sbjct: 104 ITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAH 163

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
            +K ++         T +VD+  +   + EA  L E    + +  +W A++
Sbjct: 164 AIKTQF--DSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMV 212


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/513 (38%), Positives = 293/513 (57%), Gaps = 12/513 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWL--GMCC 69
           ++ +  +I+G   N L  EAV  F +M  +G  ++  T   +L  C   G+L L  G   
Sbjct: 235 SISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTAC--GGFLALDEGKQI 292

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   ++     +  VG+ L+ MY KC +V Y   +F ++  K +I+W AM+ GY QNG +
Sbjct: 293 HAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYS 352

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              + ++ +M+   + PD  T   V+SSCA+L +   G +   Q  A+G      ++NAL
Sbjct: 353 EEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNAL 412

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           I +Y +CG+L+ A  +F  M  +  VSWTA++ GY   G     + LF+ ML  GI PDG
Sbjct: 413 ITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDG 472

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
             FV VLSACS AGL +KG  YF  M  ++ + P P+HYTCM+DLL RAG+L EA   I 
Sbjct: 473 VTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFIN 532

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDG 369
            M   PD   W  LL +C+++ N+E+ + A   + KLEP N   Y+LLS+IY+     D 
Sbjct: 533 QMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDD 592

Query: 370 IMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL------ENL 423
           + ++R  MRE  +KK+PG+S+++ K +VH+F   DR+   + +IY  L+ L      E  
Sbjct: 593 VAKLRKGMREMGVKKEPGHSWIKYKNKVHIFSADDRSSPFSDQIYAKLESLYLKMIEEGY 652

Query: 424 VQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFI 483
           V +        +K+  E +     HSEKLAIAFG++    G +I V+KNLR+CGDCH   
Sbjct: 653 VPDMSFVLHDVEKS--EKIKMLNHHSEKLAIAFGLLFIPDGLQIRVVKNLRVCGDCHNAT 710

Query: 484 KLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K +S+I  R+ +VRDA RFH FK G CSC D+W
Sbjct: 711 KYISRITQREILVRDAVRFHLFKDGVCSCGDFW 743



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 117/392 (29%), Positives = 189/392 (48%), Gaps = 67/392 (17%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVD 59
           VFD      H  V +N+L+SGY  N L+SE+V ++  M + G V +N +T   +L +  +
Sbjct: 93  VFDS--MPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSN 150

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL------ 113
            G++ LG   H    KFG      VG+ L+ MY K G ++   ++F+++PEK +      
Sbjct: 151 RGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTM 210

Query: 114 -------------------------ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDA 148
                                    I+W  +I+G  QNGL    ++ ++EM   G C D 
Sbjct: 211 ITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQ 270

Query: 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208
            TF  VL++C    A   G ++   I    +  N F+ +AL++MY +C N+K A A+F  
Sbjct: 271 FTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRK 330

Query: 209 MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
           M  K V+SWTA++ GYG +G+ E AV++F +M ++ I PD     SV+S+C++    ++G
Sbjct: 331 MRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEG 390

Query: 269 LEY-----------FYGMKNK----YGLQPGPEH---------------YTCMVDLLGRA 298
            ++           F  + N     YG     EH               +T +V    + 
Sbjct: 391 AQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQF 450

Query: 299 GQLNEALELIESML---VEPDGAVWGALLGAC 327
           G+ NE + L E+ML   + PDG  +  +L AC
Sbjct: 451 GKANETISLFETMLAHGIVPDGVTFVGVLSAC 482



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 102/215 (47%), Gaps = 32/215 (14%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM-KSLGV 144
           N L++ Y K G +   +++FD +P   +++WN+++SGYA NGL +  + +Y  M K   V
Sbjct: 75  NTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSV 134

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA---------- 194
             + +TF  +L   ++ G   +G ++  QI   G+ S  F+ + L++MYA          
Sbjct: 135 NLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANR 194

Query: 195 ---------------------RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVA 233
                                RC  + +A  +FD MP K  +SWT II G   +G  + A
Sbjct: 195 IFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEA 254

Query: 234 VQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
           V  F EM   G   D   F SVL+AC      D+G
Sbjct: 255 VDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEG 289



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 71/131 (54%), Gaps = 2/131 (1%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           N F  N L++ Y++ G L+  + +FD MP   VVSW +++ GY  +G    +V++++ ML
Sbjct: 70  NLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMML 129

Query: 242 KSG-IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           K G +  +   F ++L   S+ G  D G +  +G   K+G Q      + +VD+  + G 
Sbjct: 130 KDGSVNLNRITFSTMLILSSNRGFVDLGRQ-IHGQIFKFGYQSYLFVGSPLVDMYAKTGF 188

Query: 301 LNEALELIESM 311
           +N+A  + E +
Sbjct: 189 INDANRIFEEI 199


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/551 (38%), Positives = 299/551 (54%), Gaps = 49/551 (8%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
            V Y + I  +    L   A++L  +M    G+   + T+   LP C   G L +G   H
Sbjct: 93  AVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLPTAHTLSASLPAC---GGLAVGRALH 149

Query: 71  CICVKFGLDLDFSVGNCLMTMY--------------------------------VKCGSV 98
              VK  L  +  V   L+ MY                                 K G +
Sbjct: 150 GYAVKLALSGEPYVATALLGMYARAGDAAAARVLFDGMQPDPHVVSVTAMLTCYAKMGLL 209

Query: 99  DYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC 158
           D  R LFD +P K LI WNAM+ GY Q+G  +  L L+R M   GV PD V+ V  LS+ 
Sbjct: 210 DDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSAV 269

Query: 159 AHLGAHSVGLEVEQQIQANGFGS---NPFLNNALINMYARCGNLKKARAIFD--GMPRKT 213
           A LG    G  +   +  +       N  +  ALI+MY +CG+L+ A A+F   G   + 
Sbjct: 270 AQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDRD 329

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
           +V+W A++ GY +HGH   A+  F ++   G+ P    F+ VL+ACSH+GL D+G E F 
Sbjct: 330 IVAWNAMVNGYAMHGHSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELFR 389

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-VEPDGAVWGALLGACKIHKN 332
            M  +YG++P  EHY CMVDLLGRAG++ EA EL++SM   +PD  +W +LL AC++HKN
Sbjct: 390 SMAEEYGIEPKVEHYGCMVDLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLAACRLHKN 449

Query: 333 VELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVE 392
           +EL +     ++     N+G YVLLSN+Y+ A N   + RVR MMR   ++K+PG S VE
Sbjct: 450 MELGQRIADHLVANGLANSGTYVLLSNMYAAAGNWREVGRVRAMMRASGIQKEPGCSAVE 509

Query: 393 LKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDT------- 445
           +  RV  F+ GDR+H +  EIY  L+++  + +      R++    +   +DT       
Sbjct: 510 VGRRVVEFVAGDRSHPRAAEIYAKLEEVNGMARARGHVPRTELVLHDLDDDDTAAKEQAL 569

Query: 446 EVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHF 505
            VHSEKLA+AFG+I+T PGT I ++KNLR C DCH  +KLVS++  R+ + RD  RFHHF
Sbjct: 570 AVHSEKLALAFGLISTPPGTAIKIVKNLRACADCHAVLKLVSEVTGRKIVFRDRNRFHHF 629

Query: 506 KSGFCSCKDYW 516
             G C+C DYW
Sbjct: 630 VDGSCTCGDYW 640



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 131/310 (42%), Gaps = 39/310 (12%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   V+ G+D D +V   L   Y   G +D    L  + P+   + + + I  ++  GL 
Sbjct: 50  HAAAVRAGVDQDKAVDFRLQRAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLH 109

Query: 130 THVLELYREMK-SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
              L L  EM  S G+ P A T    L +C   G  +VG  +            P++  A
Sbjct: 110 HAALALLSEMLLSHGLLPTAHTLSASLPAC---GGLAVGRALHGYAVKLALSGEPYVATA 166

Query: 189 LINMY--------------------------------ARCGNLKKARAIFDGMPRKTVVS 216
           L+ MY                                A+ G L  AR++FDG+P K ++ 
Sbjct: 167 LLGMYARAGDAAAARVLFDGMQPDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSKDLIC 226

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG--LEYFYG 274
           W A++ GY  HG    A++LF  ML+SG+ PD  + V  LSA +  G  + G  L  F  
Sbjct: 227 WNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVT 286

Query: 275 MKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV-EPDGAVWGALLGACKIHKNV 333
             +   ++      T ++D+  + G L +A+ +   +   + D   W A++    +H + 
Sbjct: 287 NSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHS 346

Query: 334 ELAELAFGKV 343
             A  AFG++
Sbjct: 347 REALAAFGQL 356


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/521 (37%), Positives = 303/521 (58%), Gaps = 17/521 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +   +T  +  +I+GY  N  V  A  LF  M E+  E++  +ML         
Sbjct: 194 IFDEMRERNVIT--WTTMITGYGQNKRVDVARKLFEVMPEK-TEVSWTSMLL-------- 242

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVG-NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
           GY   G           + +   +  N ++    + G +   R++FDQ+ ++   TW  M
Sbjct: 243 GYTLSGRIEDAEEFFEVMPMKPVIACNAMIVALGEVGEIVKARRVFDQMEDRDNATWRGM 302

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I  Y + G     LEL+ +M+  GV P   + + +LS CA L +   G +V   +    F
Sbjct: 303 IKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQF 362

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             + ++ + L+ MY +CG L KA+ +FD  P K ++ W +II GY  HG GE A+++F E
Sbjct: 363 DGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYASHGLGEEALKVFHE 422

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M  SG  P+    +++L+ACS+ G  ++GLE F  M++K+ + P  EHY+C VD+LGRAG
Sbjct: 423 MPLSGTMPNKVTLIAILTACSYGGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAG 482

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
           ++++A+ELI SM ++PD  VWGALLGACK H  ++LAE+A  K+ ++EP N G Y+LLS+
Sbjct: 483 KVDKAMELINSMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFEIEPENAGPYILLSS 542

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGD-RNHHQTVEIYRMLD 418
           I +       +  +R  MR + + K PG S++E+  +VH+F  G  RNH +   I  ML+
Sbjct: 543 INASRSKWGDVAEMRKNMRTKNVSKFPGCSWIEVGKKVHMFTRGGIRNHPEQAMILMMLE 602

Query: 419 KLENLVQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLR 474
           K + L++E     D +      + EE ++    HSE+LA+A+G++    G  I VMKNLR
Sbjct: 603 KTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLR 662

Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDY 515
           +CGDCH  IKL+SK+ +R+ I+RDA RFHHF +G CSC+DY
Sbjct: 663 VCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDY 703



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 147/346 (42%), Gaps = 62/346 (17%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N+++SGY  N L  EA  +F +M E+ +                    W          
Sbjct: 51  WNSIVSGYFANGLPREARQMFDEMPERNI------------------VSW---------- 82

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
                      N L++ Y+K   ++  R +F+ +PE+ +++W AM+ GY Q G+      
Sbjct: 83  -----------NGLVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAEL 131

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+  M         V F G++            ++  +++     G +   +  +I    
Sbjct: 132 LFWRMPERNEVSWTVMFGGLIDGGR--------IDDARKLYDMMPGKDVVASTNMIGGLC 183

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT--AF 252
           R G + +AR IFD M  + V++WT +I GYG +   +VA +LF+ M      P+ T  ++
Sbjct: 184 REGRVDEAREIFDEMRERNVITWTTMITGYGQNKRVDVARKLFEVM------PEKTEVSW 237

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S+L   + +G  +   E+F  M  K  +         M+  LG  G++ +A  + + M 
Sbjct: 238 TSMLLGYTLSGRIEDAEEFFEVMPMKPVIA-----CNAMIVALGEVGEIVKARRVFDQM- 291

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
            + D A W  ++ A +  K  EL  L     ++ + +   +  L+S
Sbjct: 292 EDRDNATWRGMIKAYE-RKGFELEALELFAQMQRQGVRPSFPSLIS 336



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 123/293 (41%), Gaps = 53/293 (18%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +     V +N L+SGY+ N ++ EA ++F  M E+ V ++   M+         
Sbjct: 70  MFDEMPERN--IVSWNGLVSGYIKNRMIEEARNVFEIMPERNV-VSWTAMV--------K 118

Query: 61  GYLWLGMCCHC--------------ICVKFG--------------LDL----DFSVGNCL 88
           GY+  GM                    V FG               D+    D      +
Sbjct: 119 GYVQEGMVVEAELLFWRMPERNEVSWTVMFGGLIDGGRIDDARKLYDMMPGKDVVASTNM 178

Query: 89  MTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDA 148
           +    + G VD  R++FD++ E+ +ITW  MI+GY QN       +L+  M         
Sbjct: 179 IGGLCREGRVDEAREIFDEMRERNVITWTTMITGYGQNKRVDVARKLFEVMPE----KTE 234

Query: 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN-NALINMYARCGNLKKARAIFD 207
           V++  +L     LG    G   + +         P +  NA+I      G + KAR +FD
Sbjct: 235 VSWTSML-----LGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVALGEVGEIVKARRVFD 289

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
            M  +   +W  +I  Y   G    A++LF +M + G+RP   + +S+LS C+
Sbjct: 290 QMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCA 342



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 119/262 (45%), Gaps = 31/262 (11%)

Query: 94  KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVG 153
           + G ++  RK FD +  K + +WN+++SGY  NGL     +++ EM    +    V++ G
Sbjct: 29  RIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMPERNI----VSWNG 84

Query: 154 VLSSCAHLGAHSVGLEVEQQIQA--NGFGSNPFLN----NALINMYARCGNLKKARAIFD 207
           ++S          G    + I+   N F   P  N     A++  Y + G + +A  +F 
Sbjct: 85  LVS----------GYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFW 134

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            MP +  VSWT + GG    G  + A +L+D M       D  A  +++      G  D+
Sbjct: 135 RMPERNEVSWTVMFGGLIDGGRIDDARKLYDMMPGK----DVVASTNMIGGLCREGRVDE 190

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
             E F  M+ +  +      +T M+   G+  +++ A +L E M  E     W ++L   
Sbjct: 191 AREIFDEMRERNVIT-----WTTMITGYGQNKRVDVARKLFEVM-PEKTEVSWTSMLLGY 244

Query: 328 KIHKNVELAELAFGKVIKLEPM 349
            +   +E AE  F +V+ ++P+
Sbjct: 245 TLSGRIEDAE-EFFEVMPMKPV 265



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 11/149 (7%)

Query: 178 GFGSNPFLNNAL-INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
            + ++  +NN+  I+  +R G + +AR  FD +  K + SW +I+ GY  +G    A Q+
Sbjct: 11  AYSTSTGVNNSFEISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQM 70

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           FDEM +  I     ++  ++S      + ++    F  M  +  +      +T MV    
Sbjct: 71  FDEMPERNI----VSWNGLVSGYIKNRMIEEARNVFEIMPERNVVS-----WTAMVKGYV 121

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLG 325
           + G + EA EL+   + E +   W  + G
Sbjct: 122 QEGMVVEA-ELLFWRMPERNEVSWTVMFG 149


>gi|297805646|ref|XP_002870707.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316543|gb|EFH46966.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 517

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/514 (37%), Positives = 300/514 (58%), Gaps = 13/514 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKM--REQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
           V +N+LISGY     + +   +  +M   E G   N VT L ++  CV  G    G+C H
Sbjct: 7   VAWNSLISGYAGRGYLGKCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGGNKEEGVCIH 66

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
            + +K G+  +  V N LM +Y K G +    KLF+ +  K L++WN MI  + QNGLA 
Sbjct: 67  GLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAE 126

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             L  +   + +G+ PD  TF+ VL  C  +G   +   +   I   GF +N  +  AL+
Sbjct: 127 EGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITTALL 186

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           ++YA+ G L+ +  +F  +     ++WTA++  Y  HG+G  A++ F+ M+  G+ PD  
Sbjct: 187 DLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPDHV 246

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            F  +L+ACSH+GL ++G  YF  M  +Y ++P  +HY+CMVDL+GR+G L +A  LI+ 
Sbjct: 247 TFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKE 306

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M +EP   VWGALLGAC+++K+ +L   A  ++ +LEP +   Y++LSNIYS +      
Sbjct: 307 MPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPRDGRNYIMLSNIYSASGLWKDA 366

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
            R+R +M+++ L +  GYSY+E   ++H F+VGD +H ++ +I + L ++   ++   G 
Sbjct: 367 SRIRNLMKQKGLVRASGYSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSELGF 426

Query: 431 KRS--------DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLF 482
           K          D+   EE +N    HSEK+A+AFG++  SP   I++ KNLRICGDCH  
Sbjct: 427 KSRTEFVLHDVDEDVKEEMINQ---HSEKIAMAFGLLVISPMEPIIIRKNLRICGDCHET 483

Query: 483 IKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            K +S I  R+ I+RD+ RFHHF  G CSC+DYW
Sbjct: 484 AKAISLIEKRRIIIRDSKRFHHFLEGSCSCRDYW 517



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 114/225 (50%), Gaps = 4/225 (1%)

Query: 108 VPEKGLITWNAMISGYAQNGLATHVLE-LYREMKS-LGVCPDAVTFVGVLSSCAHLGAHS 165
           +PE+ L+ WN++ISGYA  G      E L R M+S +G  P+ VTF+ ++S+C H G   
Sbjct: 1   MPERDLVAWNSLISGYAGRGYLGKCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGGNKE 60

Query: 166 VGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYG 225
            G+ +   +  +G      + NAL+N+Y + G+L  +  +F+ +  K +VSW  +I  + 
Sbjct: 61  EGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHL 120

Query: 226 IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
            +G  E  +  F+     G++PD   F++VL  C   G+  +  +  +G+    G     
Sbjct: 121 QNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVV-RLSQGIHGLIMFCGFNANT 179

Query: 286 EHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
              T ++DL  + G+L ++  +    +  PD   W A+L A   H
Sbjct: 180 CITTALLDLYAKLGRLEDSSTVFLE-ITSPDSMAWTAMLAAYATH 223


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/517 (38%), Positives = 296/517 (57%), Gaps = 15/517 (2%)

Query: 15  YNALISGYV-LNSLVSEAVSLFGK-MREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           YN LIS    +      A SL+ + +    ++ N  T   L   C    +L  G   H  
Sbjct: 74  YNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHGRALHTH 133

Query: 73  CVKF-GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG---- 127
            +KF     D  V   L+  Y KCG V   R LF+Q+ +  L +WN+++S Y  N     
Sbjct: 134 VLKFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLASWNSILSAYVHNSGAIC 193

Query: 128 ----LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP 183
               L+  VL L+ EM+   +  + VT V ++S+CA LGA S G      +  +    N 
Sbjct: 194 EDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNLKLNH 253

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
           F+  ALI+MY++CG L  A  +FD +P +  + + A+IGG+ IHG+G  A+ LF +M   
Sbjct: 254 FVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLE 313

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
           G+ PD    V  + +CSH GL ++G + F  MK  YG++P  EHY C+VDLLGRAG+L E
Sbjct: 314 GLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLRE 373

Query: 304 ALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE 363
           A E + +M ++P+  +W +LLGA ++H N+E+ E+    +I+LEP  +G YVLLSN+Y+ 
Sbjct: 374 AEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLSNMYAS 433

Query: 364 ARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENL 423
               D + RVR +M++  + K PG S VE+ G +H F++GD+ H ++ EIY  L+++   
Sbjct: 434 INRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLEEMSRR 493

Query: 424 VQEHDGTKRSDQK----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDC 479
           + E+    R+ +       EE  +    HSE+LAIAF +I +     I ++KNLR+CGDC
Sbjct: 494 LHEYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAPIRIIKNLRVCGDC 553

Query: 480 HLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           H   KL+SKI +R+ IVRD  RFHHFK G CSC DYW
Sbjct: 554 HTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 590



 Score = 38.5 bits (88), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 4/119 (3%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T+CYNA+I G+ ++    +A+ LF KM  +G+  + VT++  +  C   G +  G C   
Sbjct: 284 TLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEG-CDVF 342

Query: 72  ICVK--FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK-GLITWNAMISGYAQNG 127
             +K  +G++       CL+ +  + G +    +    +P K   + W +++     +G
Sbjct: 343 ESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHG 401


>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Vitis vinifera]
          Length = 540

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/509 (39%), Positives = 295/509 (57%), Gaps = 10/509 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N +I GY ++     A++L+  M   G+  NS T   +L  C     L  G   H   V
Sbjct: 35  WNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVLNACCKLLRLCEGQELHSQIV 94

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K GLD +  + N L+ +Y  CG +DY   +FD++PE    +W+ M+SGY+QNG A   L+
Sbjct: 95  KAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYSQNGQAVETLK 154

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L REM++  V  DA T   V+  C  LG   +G  V   I   G   +  L  AL+ MY+
Sbjct: 155 LLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHSYIDKEGVKIDVVLGTALVGMYS 214

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG+L  A  +F GM  + V +W+ +I GY IHGH E A+QLFD M +S I P+   F S
Sbjct: 215 KCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKALQLFDAMKRSKIIPNCVTFTS 274

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VLSA SH+GL +KG + F  M  +Y + P  +HY CMVDL  RAG +  A + I++M +E
Sbjct: 275 VLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIE 334

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
           P+  +W  LLGACK H    L E    K++KL+P +   YV +SN+Y+       + +VR
Sbjct: 335 PNVVLWRTLLGACKTHGYKGLGEHISRKILKLDPSSPENYVFVSNVYASLGRWSSVCQVR 394

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE--H----- 427
            +M+E+  KK  G+S +E+   VH F++G+ +H +  +IY ML ++   +++  H     
Sbjct: 395 SLMKEKAPKKQHGWSSIEINFMVHKFIMGEESHPKREKIYGMLHQMARKLKQVGHVASTV 454

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           D     D++  E  L    +HSE+LAIA+G+++T  G+ I ++KNLR C DCH  IKL+S
Sbjct: 455 DVLHDIDEEEKEYALG---LHSERLAIAYGLLHTPNGSPIRIVKNLRACRDCHEVIKLIS 511

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           ++ +R+ I+RD   FHHF+   CSC DYW
Sbjct: 512 EVYNREIILRDRVCFHHFRERGCSCNDYW 540



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 112/245 (45%), Gaps = 2/245 (0%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
           G V Y   +F       L  WN +I GY+ +      + LY++M   G+ P++ TF  VL
Sbjct: 15  GHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVL 74

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
           ++C  L     G E+  QI   G      L N LI +YA CG +  A  +FD MP     
Sbjct: 75  NACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSA 134

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           SW+ ++ GY  +G     ++L  EM    +  D     SV+  C   G+ D G ++ +  
Sbjct: 135 SWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLG-KWVHSY 193

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVEL 335
            +K G++      T +V +  + G L+ AL++ + M  E D   W  ++    IH + E 
Sbjct: 194 IDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGM-AERDVTTWSIMIAGYAIHGHDEK 252

Query: 336 AELAF 340
           A   F
Sbjct: 253 ALQLF 257


>gi|255560477|ref|XP_002521253.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539521|gb|EEF41109.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 484

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/473 (40%), Positives = 280/473 (59%), Gaps = 4/473 (0%)

Query: 48  VTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQ 107
           +TM+ LLP C   G L  G C H   ++        +   L+ MY KCG ++  +++F Q
Sbjct: 12  ITMINLLPSCSQSGALSNGKCIHGYAIRKMFLPHLVLETALVDMYGKCGELELAKRVFSQ 71

Query: 108 VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVG 167
           + EK L++WN MI+ Y QNGL    LEL+  + +    PDAVT   +L + A L + S  
Sbjct: 72  IDEKNLVSWNTMIAAYVQNGLNMEALELFNCLWNEPPKPDAVTIASILPAYAELASVSEC 131

Query: 168 LEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH 227
            ++   I      S+  ++NA++ MYA+CG+LK AR IFDGM  K VVSW  +I  YGIH
Sbjct: 132 KQIHSYIIKIELSSHTIISNAIVYMYAKCGDLKTARRIFDGMLCKNVVSWNTMIMAYGIH 191

Query: 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH 287
           G G +++QLF EM ++GI+P+ + FVS+LS+CS  GL D+G E+F  MK+ Y +  G EH
Sbjct: 192 GFGTMSIQLFSEMRENGIKPNESTFVSLLSSCSITGLVDEGWEFFNSMKSDYNIDHGIEH 251

Query: 288 YTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE 347
           + CMVDLLGR G L+ A++ IE + + P   +WG+LL A +   N+ LAELA   +  LE
Sbjct: 252 FGCMVDLLGRTGNLDAAMQFIEELPLVPTARIWGSLLTASRNKNNIALAELAAKHIFSLE 311

Query: 348 PMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNH 407
             NTG YVLLSN+Y+EA   + + +++ +M+++ + K      VE  G+ H F+  D++H
Sbjct: 312 HDNTGCYVLLSNMYAEAGRWEDVEQIKTLMKKKGIVKTVSCCMVETNGKSHKFINQDKSH 371

Query: 408 HQTVEIYRMLD----KLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSP 463
            Q   IY +LD    K+      H  +K        +  N    HS KLAI FG+I+T+ 
Sbjct: 372 SQINMIYDVLDIIMKKIGKDAYVHSVSKFRLVDLMNKRKNSPANHSVKLAICFGLISTAI 431

Query: 464 GTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           G  +V+ K  RIC DCH+  K +S +  R+ I+ D+  FHHF  G CSC+DYW
Sbjct: 432 GKPVVIRKTTRICEDCHMVAKKISLVTKREIIIGDSKIFHHFNGGSCSCRDYW 484



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 101/201 (50%), Gaps = 5/201 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +I+ YV N L  EA+ LF  +  +  + ++VT+  +LP   +   +      H  
Sbjct: 78  VSWNTMIAAYVQNGLNMEALELFNCLWNEPPKPDAVTIASILPAYAELASVSECKQIHSY 137

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K  L     + N ++ MY KCG +   R++FD +  K +++WN MI  Y  +G  T  
Sbjct: 138 IIKIELSSHTIISNAIVYMYAKCGDLKTARRIFDGMLCKNVVSWNTMIMAYGIHGFGTMS 197

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN---GFGSNPFLNNAL 189
           ++L+ EM+  G+ P+  TFV +LSSC+  G    G E    ++++     G   F    +
Sbjct: 198 IQLFSEMRENGIKPNESTFVSLLSSCSITGLVDEGWEFFNSMKSDYNIDHGIEHF--GCM 255

Query: 190 INMYARCGNLKKARAIFDGMP 210
           +++  R GNL  A    + +P
Sbjct: 256 VDLLGRTGNLDAAMQFIEELP 276



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 102/217 (47%), Gaps = 6/217 (2%)

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           PD +T + +L SC+  GA S G  +        F  +  L  AL++MY +CG L+ A+ +
Sbjct: 9   PDVITMINLLPSCSQSGALSNGKCIHGYAIRKMFLPHLVLETALVDMYGKCGELELAKRV 68

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH-AGL 264
           F  +  K +VSW  +I  Y  +G    A++LF+ +     +PD     S+L A +  A +
Sbjct: 69  FSQIDEKNLVSWNTMIAAYVQNGLNMEALELFNCLWNEPPKPDAVTIASILPAYAELASV 128

Query: 265 TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
           ++    + Y +  K  L         +V +  + G L  A  + + ML + +   W  ++
Sbjct: 129 SECKQIHSYII--KIELSSHTIISNAIVYMYAKCGDLKTARRIFDGMLCK-NVVSWNTMI 185

Query: 325 GACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSN 359
            A  IH    ++   F ++ +  ++P  + +  LLS+
Sbjct: 186 MAYGIHGFGTMSIQLFSEMRENGIKPNESTFVSLLSS 222


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/509 (36%), Positives = 301/509 (59%), Gaps = 6/509 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +  +I+GY  N    +A++L  K++ + ++++ + +  +L  C       L    H  
Sbjct: 419 ISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGY 478

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K GL  D  + N ++ +Y +   VDY R +F+ +  K +++W +MI+    NGLA   
Sbjct: 479 VLKGGL-ADILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEA 537

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           LEL+  +    + PD +T V VL + A L +   G E+   +   GF     + N+L++M
Sbjct: 538 LELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDM 597

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YARCG ++ AR IF+ + ++ ++ WT++I   G+HG G+ A+ LF +M    + PD   F
Sbjct: 598 YARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITF 657

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +++L ACSH+GL  +G ++F  MKN+Y L+P PEHY C+VDLL R+  L EA   + +M 
Sbjct: 658 LALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMP 717

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           +EP   VW ALLGAC+IH N +L E+A  K+++L   N+G YVL+SN ++     + +  
Sbjct: 718 IEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEE 777

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR +M+  +LKK PG S++E++ ++H FM  D++H Q   IY  L +   L++E  G + 
Sbjct: 778 VRSIMKGNKLKKKPGCSWIEVENKIHTFMARDKSHPQCNNIYLKLAQFTKLLKEKGGYRA 837

Query: 433 SDQ-----KNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
             +        EE       HSE+LA+ +G++ TS GT + + KNLRIC DCH F K+ S
Sbjct: 838 QTKLVFHDVCEEEKTQMLYGHSERLALGYGLLVTSKGTCLRITKNLRICDDCHAFFKIAS 897

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +I  R  +VRDA+RFHHF+ G CSC D+W
Sbjct: 898 EISQRTLVVRDASRFHHFERGLCSCGDFW 926



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 178/365 (48%), Gaps = 6/365 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD  +      V +N++IS +V      EA+SLF +M+E GVE N+ T +  L  C  P
Sbjct: 205 LFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGP 264

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
            ++ +G   H + +K     D  V N L+ MY  CG ++   ++F  +  K  ++WN ++
Sbjct: 265 TFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLL 324

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SG  QN + +  +  +++M+  G  PD V+ + ++++         G+EV      +G  
Sbjct: 325 SGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGID 384

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           SN  + N+LI+MY +C  +K   + F+ MP K ++SWT II GY  +     A+ L  ++
Sbjct: 385 SNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKV 444

Query: 241 LKSGIRPDGTAFVSVLSACSHAGL-TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
               +  D     S+L ACS  GL ++K ++  +G   K GL         +V++ G   
Sbjct: 445 QLEKMDVDPMMIGSILLACS--GLKSEKLIKEIHGYVLKGGLADILIQ-NAIVNVYGELA 501

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
            ++ A  + ES +   D   W +++  C +H  + +  L     +    +      L+S 
Sbjct: 502 LVDYARHVFES-INSKDIVSWTSMITCC-VHNGLAIEALELFNSLIETNIEPDLITLVSV 559

Query: 360 IYSEA 364
           +Y+ A
Sbjct: 560 LYAAA 564



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 164/352 (46%), Gaps = 7/352 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+  + T  T  +NA+I   V      EA+ L+ +MR  GV +++ T  C+L  C   
Sbjct: 104 VFDKMSERTIFT--WNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAF 161

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQ--VPEKGLITWNA 118
               LG   H + VK G      V N L+ MY KCG +   R LFD   + +   ++WN+
Sbjct: 162 KERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNS 221

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           +IS +   G +   L L+R M+ +GV  +  TFV  L +C       +G  +   I  + 
Sbjct: 222 IISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSN 281

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
             ++ +++NALI MYA CG ++ A  +F  M  K  VSW  ++ G   +     A+  F 
Sbjct: 282 HFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQ 341

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
           +M  SG +PD  + +++++A   +     G+E  +    K+G+         ++D+ G+ 
Sbjct: 342 DMQDSGQKPDQVSVLNMIAASGRSANLLAGME-VHAYAIKHGIDSNMHIGNSLIDMYGKC 400

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN 350
             +       E M  E D   W  ++ A        L  L   + ++LE M+
Sbjct: 401 CCVKYMGSAFEYM-PEKDLISWTTII-AGYAQNECHLDALNLLRKVQLEKMD 450



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/243 (33%), Positives = 119/243 (48%), Gaps = 16/243 (6%)

Query: 91  MYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVT 150
           MY KCGS     K+FD++ E+ + TWNAMI      G     +ELY+EM+ LGV  DA T
Sbjct: 91  MYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFT 150

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG-- 208
           F  VL +C       +G E+       G+G   F+ NALI MYA+CG+L  AR +FD   
Sbjct: 151 FPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGL 210

Query: 209 MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
           M +   VSW +II  +   G    A+ LF  M + G+  +   FVS L AC       +G
Sbjct: 211 MEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQAC-------EG 263

Query: 269 LEYFYGMKNKYGLQPGPEHYT------CMVDLLGRAGQLNEALELIESMLVEPDGAVWGA 322
             +    +  + +     H+T       ++ +    GQ+ +A  + +SML + D   W  
Sbjct: 264 PTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFK-DCVSWNT 322

Query: 323 LLG 325
           LL 
Sbjct: 323 LLS 325



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 7/185 (3%)

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQ-IQANGFGSNPFLNNALINMYARCGNLKKARA 204
           P    +   L  CA   A   G ++    ++   +  + FL+   ++MY +CG+   A  
Sbjct: 44  PLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVK 103

Query: 205 IFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL 264
           +FD M  +T+ +W A+IG     G    A++L+ EM   G+  D   F  VL AC     
Sbjct: 104 VFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKE 163

Query: 265 TDKGLEYFYGMKNKYGLQPGPEHYTC--MVDLLGRAGQLNEALELIESMLVEPDGAV-WG 321
              G E  +G+  K G   G   + C  ++ +  + G L  A  L +S L+E D  V W 
Sbjct: 164 RRLGCE-IHGVAVKCGY--GGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWN 220

Query: 322 ALLGA 326
           +++ A
Sbjct: 221 SIISA 225


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/528 (38%), Positives = 300/528 (56%), Gaps = 14/528 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVD 59
           VFD    S      +NA+I GY    +  EA+ LF +M  E G      TM  +LP C  
Sbjct: 331 VFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACAR 390

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
                     H   VK G+  +  V N LM MY + G  D  R++F  V    +++WN +
Sbjct: 391 SEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTL 450

Query: 120 ISGYAQNGLATHVLELYREMKSL---GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
           I+G    G      +L REM+ L   GV P+A+T + +L  CA L A + G E+      
Sbjct: 451 ITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVR 510

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
           +   ++  + +AL++MYA+CG L  +RA+FD +PR+  ++W  +I  YG+HG G  A  L
Sbjct: 511 HALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVL 570

Query: 237 FDEMLKSG-IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295
           FD M  SG  RP+   F++ L+ACSH+G+ D+GL+ F+ M+  +G++P P+   C+VD+L
Sbjct: 571 FDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDIL 630

Query: 296 GRAGQLNEALELIESMLV-EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           GRAG+L+EA  ++ SM   E   + W  +LGAC++H+NV L E+A  ++++LEP    +Y
Sbjct: 631 GRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHY 690

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
           VLL NIYS A        VR  MR R + K+PG S++E+ G +H FM G+  H  + E++
Sbjct: 691 VLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVH 750

Query: 415 RMLDKLENLVQEHDGTKRSDQKNSEEHLNDTE------VHSEKLAIAFGIINTSPGTEIV 468
             ++ L   +     T   D       ++D +       HSEKLAIAFG++  +PG  I 
Sbjct: 751 AHMEALWGEMVARGYTP--DTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIR 808

Query: 469 VMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           V KNLR+C DCH   K +SK+V R+ ++RD  RFHHF++G CSC DYW
Sbjct: 809 VAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 856



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 166/346 (47%), Gaps = 16/346 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLP----I 56
           VF     S H  V +N+LIS   L      A++    M   G  + S T++ +L     +
Sbjct: 118 VFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHL 177

Query: 57  CVDPGYLWLGMCCHCICVKFGL---DLDFSVGNCLMTMYVKCGSVDYGRKLF-DQVPEKG 112
                 + LG   H   +K GL      F+  N L++MY + G V   ++LF    P +G
Sbjct: 178 PAAAAAVRLGREAHAFALKNGLLHGHQRFAF-NALLSMYARLGLVADAQRLFAGATPGRG 236

Query: 113 -LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVE 171
            ++TWN M+S   Q+G+    ++   +M +LGV PD VTF   L +C+ L    VG E+ 
Sbjct: 237 DVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMH 296

Query: 172 QQ-IQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIHG 228
              I+ +   +N F+ +AL++MYA    + KAR +FD +P   K +  W A+I GY   G
Sbjct: 297 AYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAG 356

Query: 229 HGEVAVQLFDEM-LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH 287
             E A++LF  M  ++G  P  T   SVL AC+ +     G E  +G   K G+      
Sbjct: 357 MDEEALRLFARMEAEAGFVPCETTMASVLPACARSE-AFAGKEAVHGYVVKRGMAGNRFV 415

Query: 288 YTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNV 333
              ++D+  R G+ + A  +  +M+  PD   W  L+  C +  +V
Sbjct: 416 QNALMDMYARLGKTDVARRIF-AMVDLPDVVSWNTLITGCVVQGHV 460



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 123/257 (47%), Gaps = 19/257 (7%)

Query: 83  SVGNCLMTMYVKCGSVDYGRKLFDQVPEKG--LITWNAMISGYAQNGLATHVLELYREMK 140
           +V N L+T Y +CG +    ++F  + +     +++N++IS         H L   R M 
Sbjct: 97  AVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAML 156

Query: 141 SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA----NGF--GSNPFLNNALINMYA 194
           + G    + T V VL + +HL A +  + + ++  A    NG   G   F  NAL++MYA
Sbjct: 157 AGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYA 216

Query: 195 RCGNLKKARAIFDGMP--RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           R G +  A+ +F G    R  VV+W  ++      G  + AVQ   +M+  G+RPDG  F
Sbjct: 217 RLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTF 276

Query: 253 VSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            S L ACS   L D G E + Y +K+   L       + +VD+     Q+ +A ++ + +
Sbjct: 277 ASALPACSRLELLDVGREMHAYVIKDDE-LAANSFVASALVDMYATHEQVGKARQVFDMV 335

Query: 312 LVEPDG----AVWGALL 324
              PD      +W A++
Sbjct: 336 ---PDSGKQLGMWNAMI 349



 Score = 39.3 bits (90), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 84/217 (38%), Gaps = 43/217 (19%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKT--VVSWTAIIGGYGIHGHGEVAVQLFDE 239
           +P + NAL+  YARCG L  A  +F  +       VS+ ++I    +    + A+     
Sbjct: 95  SPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRA 154

Query: 240 MLKSGIRPDGTAFVSVLSACSH----AGLTDKGLE-YFYGMKNKY--------------- 279
           ML  G        VSVL A SH    A     G E + + +KN                 
Sbjct: 155 MLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSM 214

Query: 280 ---------------GLQPGPEH---YTCMVDLLGRAGQLNEALELIESML---VEPDGA 318
                          G  PG      +  MV +L ++G  +EA++ +  M+   V PDG 
Sbjct: 215 YARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGV 274

Query: 319 VWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV 355
            + + L AC   + +++       VIK + +    +V
Sbjct: 275 TFASALPACSRLELLDVGREMHAYVIKDDELAANSFV 311


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/518 (38%), Positives = 308/518 (59%), Gaps = 17/518 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N+++  Y+ +   S+A+ L+ +M  +G+ ++  T+  +L    +   L  G+  H  
Sbjct: 206 VSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAK 265

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYG-RKLFDQVPEKGLITWNAMISGYA-QNGLAT 130
            +K G   +  VG+ L+ +Y KCG      RK+FD++    L+ WN MISGY+    L+ 
Sbjct: 266 LIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSD 325

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF-LNNAL 189
             LE +R+++ +G  PD  + V V+S+C+++ + S G +V          SN   +NNAL
Sbjct: 326 EALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNAL 385

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           I MY++CGNL+ A+ +FD MP    VS+ ++I GY  HG G  ++ LF  ML+    P  
Sbjct: 386 IAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTN 445

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
             F+SVL+AC+H G  + G  YF  MK K+G++P   H++CM+DLLGRAG+L+EA  LIE
Sbjct: 446 ITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIE 505

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDG 369
           ++  +P    W ALLGAC+IH NVELA  A  ++++L+P+N   YV+L+NIYS+   L  
Sbjct: 506 TIPFDPGFFXWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQD 565

Query: 370 IMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE--- 426
              VR +MR+R +KK PG S++E+  R+H+F+  D  H    +I   L+++   +++   
Sbjct: 566 AASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEYLEEMMRKIKKVGY 625

Query: 427 --------HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGD 478
                     G  R  Q+  E  L     HSEKLA++FG+++T  G  I+V KNLRIC D
Sbjct: 626 TPEVRSASVGGDDRVWQREEELRLGH---HSEKLAVSFGLMSTREGEPILVFKNLRICVD 682

Query: 479 CHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           CH  IK +S++V R+  VRD+ RFH FK G CSC  YW
Sbjct: 683 CHNAIKYISEVVKREITVRDSHRFHCFKDGQCSCGGYW 720



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 104/406 (25%), Positives = 198/406 (48%), Gaps = 16/406 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPIC-VD 59
           +FDE  +    +V YN LI+ Y        A  LF +MRE  ++++  T+  ++  C ++
Sbjct: 96  LFDEMPQPD--SVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITACGIN 153

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE-KGLITWNA 118
            G   L    H + V  GLD   SVGN L+T Y K G +   R++F  + E +  ++WN+
Sbjct: 154 VG---LIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNS 210

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           M+  Y Q+   +  LELY EM   G+  D  T   VL++  ++     GL+   ++  +G
Sbjct: 211 MVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSG 270

Query: 179 FGSNPFLNNALINMYARCGN-LKKARAIFDGMPRKTVVSWTAIIGGYGIHGH-GEVAVQL 236
           +  N  + + LI++Y++CG  +   R +FD +    +V W  +I GY ++    + A++ 
Sbjct: 271 YHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALEC 330

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY-TCMVDLL 295
           F ++   G RPD  + V V+SACS+     +G +  +G+  K  +          ++ + 
Sbjct: 331 FRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQ-VHGLALKLDIPSNRISVNNALIAMY 389

Query: 296 GRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE--PMNTGY 353
            + G L +A  L ++M  E +   + +++     H     +   F ++++++  P N  +
Sbjct: 390 SKCGNLRDAKTLFDTM-PEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTNITF 448

Query: 354 YVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGY--SYVELKGRV 397
             +L+      R  DG +   MM ++  ++ + G+    ++L GR 
Sbjct: 449 ISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRA 494



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 122/253 (48%), Gaps = 12/253 (4%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L++ Y K   V+   +LFD++P+   +++N +I+ YA+ G      +L+ EM+   + 
Sbjct: 78  NTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLD 137

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA----NGFGSNPFLNNALINMYARCGNLKK 201
            D  T  G++++C       + + + +Q+ A     G  S   + NALI  Y++ G LK+
Sbjct: 138 MDGFTLSGIITACG------INVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKE 191

Query: 202 ARAIFDGMPR-KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
           AR IF  +   +  VSW +++  Y  H  G  A++L+ EM   G+  D     SVL+A +
Sbjct: 192 ARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFT 251

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320
           +      GL+ F+    K G        + ++DL  + G        +   +  PD  +W
Sbjct: 252 NVQDLLGGLQ-FHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLW 310

Query: 321 GALLGACKIHKNV 333
             ++    +++++
Sbjct: 311 NTMISGYSLYEDL 323



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 3/150 (2%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           N F  N LI+ YA+   ++ A  +FD MP+   VS+  +I  Y   G  + A QLF EM 
Sbjct: 73  NVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMR 132

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301
           ++ +  DG     +++AC   G+    +   + +    GL         ++    + G L
Sbjct: 133 EAFLDMDGFTLSGIITAC---GINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFL 189

Query: 302 NEALELIESMLVEPDGAVWGALLGACKIHK 331
            EA  +   +  + D   W +++ A   H+
Sbjct: 190 KEARRIFHWLSEDRDEVSWNSMVVAYMQHR 219



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 4/99 (4%)

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           ++ +L+N  + +Y++C  L  AR +FD      V S+  +I  Y    + EVA QLFDEM
Sbjct: 41  TSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEM 100

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279
            +    PD  ++ ++++A +  G T    + F  M+  +
Sbjct: 101 PQ----PDSVSYNTLIAAYARRGDTQPAFQLFLEMREAF 135



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 61/117 (52%), Gaps = 10/117 (8%)

Query: 10  HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPIC-----VDPGYLW 64
           H TV YN++I+GY  + +  +++ LF +M E      ++T + +L  C     V+ G ++
Sbjct: 408 HNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGKIY 467

Query: 65  LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP-EKGLITWNAMI 120
             M    +  KFG++ +    +C++ +  + G +    +L + +P + G   W+A++
Sbjct: 468 FNM----MKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFXWSALL 520


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/528 (38%), Positives = 300/528 (56%), Gaps = 14/528 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVD 59
           VFD    S      +NA+I GY    +  EA+ LF +M  E G      TM  +LP C  
Sbjct: 329 VFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACAR 388

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
                     H   VK G+  +  V N LM MY + G  D  R++F  V    +++WN +
Sbjct: 389 SEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTL 448

Query: 120 ISGYAQNGLATHVLELYREMKSL---GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
           I+G    G      +L REM+ L   GV P+A+T + +L  CA L A + G E+      
Sbjct: 449 ITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVR 508

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
           +   ++  + +AL++MYA+CG L  +RA+FD +PR+  ++W  +I  YG+HG G  A  L
Sbjct: 509 HALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVL 568

Query: 237 FDEMLKSG-IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295
           FD M  SG  RP+   F++ L+ACSH+G+ D+GL+ F+ M+  +G++P P+   C+VD+L
Sbjct: 569 FDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDIL 628

Query: 296 GRAGQLNEALELIESMLV-EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           GRAG+L+EA  ++ SM   E   + W  +LGAC++H+NV L E+A  ++++LEP    +Y
Sbjct: 629 GRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHY 688

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
           VLL NIYS A        VR  MR R + K+PG S++E+ G +H FM G+  H  + E++
Sbjct: 689 VLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVH 748

Query: 415 RMLDKLENLVQEHDGTKRSDQKNSEEHLNDTE------VHSEKLAIAFGIINTSPGTEIV 468
             ++ L   +     T   D       ++D +       HSEKLAIAFG++  +PG  I 
Sbjct: 749 AHMEALWGEMVARGYTP--DTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIR 806

Query: 469 VMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           V KNLR+C DCH   K +SK+V R+ ++RD  RFHHF++G CSC DYW
Sbjct: 807 VAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 854



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 166/346 (47%), Gaps = 16/346 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLP----I 56
           VF     S H  V +N+LIS   L      A++    M   G  + S T++ +L     +
Sbjct: 116 VFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHL 175

Query: 57  CVDPGYLWLGMCCHCICVKFGL---DLDFSVGNCLMTMYVKCGSVDYGRKLF-DQVPEKG 112
                 + LG   H   +K GL      F+  N L++MY + G V   ++LF    P +G
Sbjct: 176 PAAAAAVRLGREAHAFALKNGLLHGHQRFAF-NALLSMYARLGLVADAQRLFAGATPGRG 234

Query: 113 -LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVE 171
            ++TWN M+S   Q+G+    ++   +M +LGV PD VTF   L +C+ L    VG E+ 
Sbjct: 235 DVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMH 294

Query: 172 QQ-IQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIHG 228
              I+ +   +N F+ +AL++MYA    + KAR +FD +P   K +  W A+I GY   G
Sbjct: 295 AYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAG 354

Query: 229 HGEVAVQLFDEM-LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH 287
             E A++LF  M  ++G  P  T   SVL AC+ +     G E  +G   K G+      
Sbjct: 355 MDEEALRLFARMEAEAGFVPCETTMASVLPACARSE-AFAGKEAVHGYVVKRGMAGNRFV 413

Query: 288 YTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNV 333
              ++D+  R G+ + A  +  +M+  PD   W  L+  C +  +V
Sbjct: 414 QNALMDMYARLGKTDVARRIF-AMVDLPDVVSWNTLITGCVVQGHV 458



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 123/257 (47%), Gaps = 19/257 (7%)

Query: 83  SVGNCLMTMYVKCGSVDYGRKLFDQVPEKG--LITWNAMISGYAQNGLATHVLELYREMK 140
           +V N L+T Y +CG +    ++F  + +     +++N++IS         H L   R M 
Sbjct: 95  AVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAML 154

Query: 141 SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA----NGF--GSNPFLNNALINMYA 194
           + G    + T V VL + +HL A +  + + ++  A    NG   G   F  NAL++MYA
Sbjct: 155 AGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYA 214

Query: 195 RCGNLKKARAIFDGMP--RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           R G +  A+ +F G    R  VV+W  ++      G  + AVQ   +M+  G+RPDG  F
Sbjct: 215 RLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTF 274

Query: 253 VSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            S L ACS   L D G E + Y +K+   L       + +VD+     Q+ +A ++ + +
Sbjct: 275 ASALPACSRLELLDVGREMHAYVIKDDE-LAANSFVASALVDMYATHEQVGKARQVFDMV 333

Query: 312 LVEPDG----AVWGALL 324
              PD      +W A++
Sbjct: 334 ---PDSGKQLGMWNAMI 347



 Score = 39.3 bits (90), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 84/217 (38%), Gaps = 43/217 (19%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKT--VVSWTAIIGGYGIHGHGEVAVQLFDE 239
           +P + NAL+  YARCG L  A  +F  +       VS+ ++I    +    + A+     
Sbjct: 93  SPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRA 152

Query: 240 MLKSGIRPDGTAFVSVLSACSH----AGLTDKGLE-YFYGMKNKY--------------- 279
           ML  G        VSVL A SH    A     G E + + +KN                 
Sbjct: 153 MLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSM 212

Query: 280 ---------------GLQPGPEH---YTCMVDLLGRAGQLNEALELIESML---VEPDGA 318
                          G  PG      +  MV +L ++G  +EA++ +  M+   V PDG 
Sbjct: 213 YARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGV 272

Query: 319 VWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV 355
            + + L AC   + +++       VIK + +    +V
Sbjct: 273 TFASALPACSRLELLDVGREMHAYVIKDDELAANSFV 309


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/554 (38%), Positives = 314/554 (56%), Gaps = 48/554 (8%)

Query: 2   FDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPG 61
           FDE  + +   V +NA+ S Y       EA++LF +M E+G+  +  T +  +  C   G
Sbjct: 215 FDEMPERS--VVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIG 272

Query: 62  YLWLGMCC-------HCICVKFG----LDLDFSVGN---------------------CLM 89
              L           H +   F     LD+    GN                      ++
Sbjct: 273 DPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMI 332

Query: 90  TMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKS-LGVCPDA 148
           + Y + G +   R+LFD +P++ +++WN+MI+GYAQNG +   +EL++EM S + + PD 
Sbjct: 333 SAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDE 392

Query: 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208
           VT   VLS+C H+GA  +   V   ++           N+LI MY++CG++  A  IF  
Sbjct: 393 VTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQT 452

Query: 209 MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
           M  + VVS+  +I G+  +GHG+ A++L   M + GI PD   ++ VL+ACSHAGL ++G
Sbjct: 453 MGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEG 512

Query: 269 LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACK 328
              F  ++      P  +HY CMVDLLGRAG+L+EA  LI+SM ++P   V+G+LL A +
Sbjct: 513 KNVFKSIQ-----APTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASR 567

Query: 329 IHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGY 388
           IHK V L ELA  K+ +LEP N G YVLLSNIY+     + + RVR MM++  LKK  G 
Sbjct: 568 IHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGM 627

Query: 389 SYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLEN------LVQEHDGTKRSDQKNSEEHL 442
           S+VE KG+VH F VGDR+H Q+ +IY++L +LE        V +     R  ++  +E +
Sbjct: 628 SWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELERKMKRVGFVADKSCALRDVEEEEKEEM 687

Query: 443 NDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRF 502
             T  HSEKLAI F ++ +  GT I V+KNLRIC DCH  IK++SK+  R+ +VRD  RF
Sbjct: 688 LGT--HSEKLAICFALLISEVGTTIRVVKNLRICLDCHTAIKMISKLEGREIVVRDNNRF 745

Query: 503 HHFKSGFCSCKDYW 516
           H F  G CSC DYW
Sbjct: 746 HCFSEGMCSCHDYW 759



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 155/333 (46%), Gaps = 50/333 (15%)

Query: 16  NALISGYVLNSLVSEAVSLFGKMREQGV-EINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           NA++  Y  N  V  A +LF +M E+ + + NS+   C           W         V
Sbjct: 134 NAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGC-----------WKSGNETEAVV 182

Query: 75  KFGL--DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            F +    +      ++T Y K G ++  R+ FD++PE+ +++WNAM S YAQ       
Sbjct: 183 LFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEA 242

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+ +M   G+ PD  T+V  +SSC+ +G  ++   + + I       N F+  AL++M
Sbjct: 243 LNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDM 302

Query: 193 YARCGNLKKARAI--------------------------------FDGMPRKTVVSWTAI 220
           +A+ GNL+ AR I                                FD MP++ VVSW ++
Sbjct: 303 HAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSM 362

Query: 221 IGGYGIHGHGEVAVQLFDEMLKS-GIRPDGTAFVSVLSACSHAGLTDKGLEYF-YGMKNK 278
           I GY  +G   ++++LF EM+    I+PD     SVLSAC H G     L Y+   +  +
Sbjct: 363 IAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALK--LSYWVLDIVRE 420

Query: 279 YGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
             ++ G   +  ++ +  + G + +A  + ++M
Sbjct: 421 KNIKLGISGFNSLIFMYSKCGSVADAHRIFQTM 453



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 144/347 (41%), Gaps = 56/347 (16%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           Y+ ++  Y      ++ VSLF       +       + L+ +    G ++     H   +
Sbjct: 68  YSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMF-----HAYVL 122

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K G   D  + N ++ MY K G VD  R LF+Q+ E+ L  WN+MISG  ++G  T  + 
Sbjct: 123 KLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVV 182

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+  M +  +    +T+                                    +++  YA
Sbjct: 183 LFNMMPARNI----ITWT-----------------------------------SMVTGYA 203

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           + G+L+ AR  FD MP ++VVSW A+   Y      + A+ LF +ML+ GI PD T +V 
Sbjct: 204 KMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVV 263

Query: 255 VLSACSHAG---LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            +S+CS  G   L D  L     M ++  +       T ++D+  + G L  A  + + +
Sbjct: 264 TISSCSSIGDPTLADSILR----MIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDEL 319

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGK-----VIKLEPMNTGY 353
             + +   W  ++ A      + LA   F       V+    M  GY
Sbjct: 320 GSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGY 366


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/508 (40%), Positives = 300/508 (59%), Gaps = 10/508 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +NA+ISGYV      EA+ LF +M     V  +  TM+ ++  C     + LG   H 
Sbjct: 187 VSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHS 246

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                G   +  + N L+ +Y K G V+   +LFD +  K +I+WN +I GY    L   
Sbjct: 247 WINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKE 306

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI--QANGFGSN-PFLNNA 188
            L L++EM   G  P+ VT + +L +CAHLGA  +G  +   I  +  G  +N   L  +
Sbjct: 307 ALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTS 366

Query: 189 LINMYARCGNLKKARAIFDG-MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           LI+MYA+CG++  A+ +FD  M  +++ +W A+I G+ +HG    A  +F  M  +GI P
Sbjct: 367 LIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEP 426

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           D   FV +LSACSH+G+ D G   F  M   Y + P  EHY CM+DLLG +G   EA E+
Sbjct: 427 DDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEM 486

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNL 367
           I +M +EPDG +W +LL ACKIH N+EL E    K+IK+EP N+G YVLLSNIY+ A   
Sbjct: 487 INTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRW 546

Query: 368 DGIMRVRMMMRERRLKKD-PGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE 426
           + + ++R ++ ++ +KK  PG S +E+   VH F++GD+ H Q  EIY ML+++E L++E
Sbjct: 547 NEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEE 606

Query: 427 H----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLF 482
                D ++   +   E        HSEKLAIAFG+I+T PGT++ +MKNLR+C +CH  
Sbjct: 607 AGFVPDTSEVLQEMEEEWREGALRHHSEKLAIAFGLISTKPGTKLTIMKNLRVCKNCHEA 666

Query: 483 IKLVSKIVDRQFIVRDATRFHHFKSGFC 510
            KL+SKI  R+ I RD TRF HF+ G C
Sbjct: 667 TKLISKIYKREIIARDRTRFXHFRDGVC 694



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/394 (28%), Positives = 187/394 (47%), Gaps = 38/394 (9%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD +I+  +L + +N +  G+ L+S    A+ L+  M   G+  +S T   LL  C   
Sbjct: 45  VFD-TIQEPNLLI-WNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKS 102

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA-- 118
                G   H   +K G DLD  V   L++MY + G ++  RK+FD    + ++++ A  
Sbjct: 103 KIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALI 162

Query: 119 -----------------------------MISGYAQNGLATHVLELYREMKSL-GVCPDA 148
                                        MISGY + G     LEL++EM  +  V PD 
Sbjct: 163 AGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDE 222

Query: 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208
            T V V+S+CA   +  +G  V   I  +GF SN  + NALI++Y++ G ++ A  +FDG
Sbjct: 223 STMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDG 282

Query: 209 MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
           +  K V+SW  +IGGY      + A+ LF EML+SG  P+    +S+L AC+H G  D G
Sbjct: 283 LWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG 342

Query: 269 --LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
             +  +   K K  +       T ++D+  + G ++ A ++ +S +     + W A++  
Sbjct: 343 RWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISG 402

Query: 327 CKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
             +H     A   F ++    +EP +  +  LLS
Sbjct: 403 FAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLS 436



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 123/258 (47%), Gaps = 34/258 (13%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           Y   +FD + E  L+ WN M  G+A +      L+LY  M SLG+ PD+ TF  +L SCA
Sbjct: 41  YAISVFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCA 100

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
                  G ++   +   GF  + +++ +LI+MYA+ G L+ AR +FD    + VVS+TA
Sbjct: 101 KSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTA 160

Query: 220 IIGGYGIHGHGEVAVQLFDE--------------------------------MLKSGIRP 247
           +I GY   G+ E A +LFDE                                M+ + +RP
Sbjct: 161 LIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRP 220

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           D +  V+V+SAC+ +   + G  + +   N +G     +    ++DL  + G++  A EL
Sbjct: 221 DESTMVTVVSACAQSDSIELG-RHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACEL 279

Query: 308 IESMLVEPDGAVWGALLG 325
            +  L   D   W  L+G
Sbjct: 280 FDG-LWNKDVISWNTLIG 296



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 89/222 (40%), Gaps = 50/222 (22%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD S+ +  L+  +NA+ISG+ ++   + A  +F +MR  G+E + +T + LL  C   
Sbjct: 383 VFDSSMSNRSLST-WNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHS 441

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT----- 115
           G L                                   D GR +F  +     IT     
Sbjct: 442 GML-----------------------------------DLGRNIFRSMTRGYEITPKLEH 466

Query: 116 WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ--- 172
           +  MI     +GL     E+   + ++ + PD V +  +L +C   G   +G    +   
Sbjct: 467 YGCMIDLLGHSGLFKEAEEM---INTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLI 523

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFD--GMPRK 212
           +I+    GS   L+N +     R   + K RA+ +  GM +K
Sbjct: 524 KIEPGNSGSYVLLSN-IYAAAGRWNEVAKIRALLNDKGMKKK 564


>gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/510 (37%), Positives = 304/510 (59%), Gaps = 5/510 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T  +  +I GYV       A+  + +M E+G+E ++ T  CLL  C     +  G   H 
Sbjct: 98  TFDFKTMIRGYVNEMSFEVALCFYNEMMERGIEPDNFTYPCLLKACTRLKAIREGKQIHG 157

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              K GL+ D  V N L+ MY +CG ++    +F+++  K   +W++M S     G+ + 
Sbjct: 158 HVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKSAASWSSMFSACVGMGMWSE 217

Query: 132 VLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
            L L+REM +   +  +    V  LS+CA+ GA ++G+ +   +  N    N  +  +L+
Sbjct: 218 CLMLFREMCRETNLKAEESGMVSALSACANTGALNLGMSIHGFLLRNISELNIIVKTSLV 277

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MY +CG +  A  IF  M ++  ++++A+I G+ +HG GE A+++F EM+K G+ PD  
Sbjct: 278 DMYVKCGCIDNALHIFQKMEKRNNLTYSAMISGFALHGEGESALRMFSEMIKEGLEPDHV 337

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            +VS+L+ACSH+GL  +G   F  M  +  ++P  EHY C+VDLLGRAG L EALE I+S
Sbjct: 338 VYVSLLNACSHSGLVKEGRRVFGEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQS 397

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           + +E +  VW + L  C++H+N+EL ++A  +++KL   N G Y+L+SN+YS+A   D +
Sbjct: 398 IPIEQNDVVWRSFLSQCRVHQNIELGQIAAQELLKLCSHNPGDYLLISNMYSQAHMWDDV 457

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ----E 426
            R R  +  + LK+ PG+S V++KG+ H F+  DR+H Q  EIY+ML ++E  ++     
Sbjct: 458 ARSRTEIAIKGLKQTPGFSTVKVKGKTHRFVSQDRSHPQCKEIYKMLHQMEWQLKFEGYS 517

Query: 427 HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
            D T+     + EE     + HS+K+AIAF ++ T PG+ I + +NLR+C DCH + K +
Sbjct: 518 PDLTQILLNVDEEEKKERLKGHSQKVAIAFALLYTPPGSIIKIARNLRMCSDCHTYTKKI 577

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           S I +R+ +VRD  RFH FK G CSCKDYW
Sbjct: 578 SMIYEREIVVRDRNRFHLFKGGTCSCKDYW 607



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 136/284 (47%), Gaps = 12/284 (4%)

Query: 97  SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS 156
           S++Y   +F  + +     +  MI GY         L  Y EM   G+ PD  T+  +L 
Sbjct: 82  SMNYAASIFRGIDDPCTFDFKTMIRGYVNEMSFEVALCFYNEMMERGIEPDNFTYPCLLK 141

Query: 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS 216
           +C  L A   G ++   +   G  ++ F+ N+LINMY RCG ++ +  +F+ +  K+  S
Sbjct: 142 ACTRLKAIREGKQIHGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKSAAS 201

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLK-SGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYG 274
           W+++       G     + LF EM + + ++ + +  VS LSAC++ G  + G+  + + 
Sbjct: 202 WSSMFSACVGMGMWSECLMLFREMCRETNLKAEESGMVSALSACANTGALNLGMSIHGFL 261

Query: 275 MKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVE 334
           ++N   L    +  T +VD+  + G ++ AL + + M  + +   + A++    +H   E
Sbjct: 262 LRNISELNIIVK--TSLVDMYVKCGCIDNALHIFQKM-EKRNNLTYSAMISGFALHGEGE 318

Query: 335 LAELAFGKVIK--LEPMNTGYYVLL-----SNIYSEARNLDGIM 371
            A   F ++IK  LEP +  Y  LL     S +  E R + G M
Sbjct: 319 SALRMFSEMIKEGLEPDHVVYVSLLNACSHSGLVKEGRRVFGEM 362


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1038

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/509 (37%), Positives = 299/509 (58%), Gaps = 5/509 (0%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPG-YLWLGMCCHC 71
            V +NALI GY  N    +A++ F  +R +GV  N +T++ +L  C+ PG  L  G   H 
Sbjct: 530  VAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHA 589

Query: 72   ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              V  G + D  V N L+TMY KCG +   + LF+ +  + +ITWNA+++  A +G    
Sbjct: 590  YIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAANAHHGHGEE 649

Query: 132  VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            VL+L  +M+S G+  D  +F   LS+ A L     G ++       GF  + F+ NA  +
Sbjct: 650  VLKLVSKMRSFGLSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFELDCFIFNAAAD 709

Query: 192  MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
            MY++CG + +   +      +++ SW  +I   G HG+ E   + F EML+ GI+P    
Sbjct: 710  MYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCETFHEMLEMGIKPGHVT 769

Query: 252  FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            FVS+L+ACSH GL D+GL Y+  +   +GL+P  EH  C++DLLGR+G+L EA   I  M
Sbjct: 770  FVSLLTACSHGGLVDQGLAYYDMIAKDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKM 829

Query: 312  LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
             ++P+  VW +LL +CKIH++++    A   + KLEP +   +VL SN+++     + + 
Sbjct: 830  PMKPNDLVWRSLLASCKIHRDLDRGRKAAENLSKLEPEDDSVFVLSSNMFATTGRWEDVE 889

Query: 372  RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH---- 427
             VR  M  + +KK    S+V+LK +V  F +GDR H QT+EIY  L+ ++ L++E     
Sbjct: 890  NVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVA 949

Query: 428  DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
            D ++     + E+  ++   HSE+LA+A+ +++T  G+ + + KNLRIC DCH   K VS
Sbjct: 950  DTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVS 1009

Query: 488  KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +++ R+ ++RD  RFHHF+SG CSCKDYW
Sbjct: 1010 RVIGRRIVLRDQYRFHHFESGLCSCKDYW 1038



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 150/320 (46%), Gaps = 3/320 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T+ +N++++ Y  N  + E+  +F  MR    E+NS T+  LL +  D  +   G   H 
Sbjct: 327 TISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHG 386

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + VK G D    V N L+ MY   G  +    +F Q+P K LI+WN++++ +  +G +  
Sbjct: 387 LVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLD 446

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L +   M   G   + VTF   L++C        G  +   +  +G   N  + NAL++
Sbjct: 447 ALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVS 506

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY + G +  +R +   MPR+ VV+W A+IGGY  +   + A+  F  +   G+  +   
Sbjct: 507 MYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYIT 566

Query: 252 FVSVLSACSHAG-LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            VSVLSAC   G L ++G +  +      G +        ++ +  + G L+ + +L   
Sbjct: 567 VVSVLSACLVPGDLLERG-KPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNG 625

Query: 311 MLVEPDGAVWGALLGACKIH 330
            L       W A+L A   H
Sbjct: 626 -LDNRSIITWNAILAANAHH 644



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 164/346 (47%), Gaps = 3/346 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + +L+ GY       E + ++  MR +GVE N  +M  ++  C       LG      
Sbjct: 227 VSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKDESLGRQIIGQ 286

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K GL+   +V N L++M+   G+VDY   +F+Q+ E+  I+WN++++ YAQNG     
Sbjct: 287 VIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEES 346

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
             ++  M+      ++ T   +LS    +     G  +   +   GF S   + N L+ M
Sbjct: 347 SRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRM 406

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA  G  ++A  +F  MP K ++SW +++  +   G    A+ +   M+++G   +   F
Sbjct: 407 YAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTF 466

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S L+AC      DKG    +G+    GL         +V + G+ G ++ +  ++  M 
Sbjct: 467 TSALAACFSPEFFDKG-RILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQM- 524

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
              D   W AL+G    +++ + A  AF + +++E ++  Y  ++S
Sbjct: 525 PRRDVVAWNALIGGYAENEDPDKALAAF-QTLRVEGVSANYITVVS 569



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 158/319 (49%), Gaps = 11/319 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWL-GMCCHC 71
           V +N ++SG V   L  E +  F KM + G++ +S  +  L+  C   G ++  G+  H 
Sbjct: 125 VSWNTMMSGIVRVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHG 184

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              K GL  D  V   ++ +Y   G V   RK+F+++P++ +++W +++ GY+  G    
Sbjct: 185 FVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEE 244

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
           V+++Y+ M+  GV  +  +   V+SSC  L   S+G ++  Q+  +G  S   + N+LI+
Sbjct: 245 VIDIYKSMRGEGVECNENSMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVENSLIS 304

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           M+   GN+  A  IF+ +  +  +SW +I+  Y  +GH E + ++F+ M +     + T 
Sbjct: 305 MFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTT 364

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR----AGQLNEALEL 307
             ++LS          G    +G+  K G     +   C+ + L R    AG+  EA +L
Sbjct: 365 VSTLLSVLGDVDHQKWG-RGIHGLVVKMGF----DSVVCVCNTLLRMYAGAGRSEEA-DL 418

Query: 308 IESMLVEPDGAVWGALLGA 326
           +   +   D   W +L+ +
Sbjct: 419 VFKQMPTKDLISWNSLMAS 437



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 139/277 (50%), Gaps = 5/277 (1%)

Query: 66  GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
           G   H +CVK  + L     N L+ MY K G V   R LFD++P +  ++WN M+SG  +
Sbjct: 77  GRALHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIVR 136

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA-HSVGLEVEQQIQANGFGSNPF 184
            GL    +E +++M  LG+ P +     ++++C   G+    G++V   +  +G  S+ +
Sbjct: 137 VGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVY 196

Query: 185 LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
           ++ A++++Y   G +  +R +F+ MP + VVSWT+++ GY   G  E  + ++  M   G
Sbjct: 197 VSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEG 256

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGL-EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
           +  +  +   V+S+C    L D+ L     G   K GL+        ++ + G  G ++ 
Sbjct: 257 VECNENSMSLVISSCGL--LKDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDY 314

Query: 304 ALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           A   I + + E D   W +++ A   + ++E +   F
Sbjct: 315 A-NYIFNQISERDTISWNSIVAAYAQNGHIEESSRIF 350


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/554 (38%), Positives = 314/554 (56%), Gaps = 48/554 (8%)

Query: 2   FDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPG 61
           FDE  + +   V +NA+ S Y       EA++LF +M E+G+  +  T +  +  C   G
Sbjct: 215 FDEMPERS--VVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIG 272

Query: 62  YLWLGMCC-------HCICVKFG----LDLDFSVGN---------------------CLM 89
              L           H +   F     LD+    GN                      ++
Sbjct: 273 DPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMI 332

Query: 90  TMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKS-LGVCPDA 148
           + Y + G +   R+LFD +P++ +++WN+MI+GYAQNG +   +EL++EM S + + PD 
Sbjct: 333 SAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDE 392

Query: 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208
           VT   VLS+C H+GA  +   V   ++           N+LI MY++CG++  A  IF  
Sbjct: 393 VTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQT 452

Query: 209 MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
           M  + VVS+  +I G+  +GHG+ A++L   M + GI PD   ++ VL+ACSHAGL ++G
Sbjct: 453 MGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEG 512

Query: 269 LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACK 328
              F  ++      P  +HY CMVDLLGRAG+L+EA  LI+SM ++P   V+G+LL A +
Sbjct: 513 KNVFKSIQ-----APTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASR 567

Query: 329 IHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGY 388
           IHK V L ELA  K+ +LEP N G YVLLSNIY+     + + RVR MM++  LKK  G 
Sbjct: 568 IHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGM 627

Query: 389 SYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLEN------LVQEHDGTKRSDQKNSEEHL 442
           S+VE KG+VH F VGDR+H Q+ +IY++L +LE        V +     R  ++  +E +
Sbjct: 628 SWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELERKMKRVGFVADKSCALRDVEEEEKEEM 687

Query: 443 NDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRF 502
             T  HSEKLAI F ++ +  GT I V+KNLRIC DCH  IK++SK+  R+ +VRD  RF
Sbjct: 688 LGT--HSEKLAICFALLISEVGTTIRVVKNLRICLDCHTAIKMISKLEGREIVVRDNNRF 745

Query: 503 HHFKSGFCSCKDYW 516
           H F  G CSC DYW
Sbjct: 746 HCFSEGMCSCHDYW 759



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 155/333 (46%), Gaps = 50/333 (15%)

Query: 16  NALISGYVLNSLVSEAVSLFGKMREQGV-EINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           NA++  Y  N  V  A +LF +M E+ + + NS+   C           W         V
Sbjct: 134 NAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGC-----------WKSGNETEAVV 182

Query: 75  KFGL--DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            F +    +      ++T Y K G ++  R+ FD++PE+ +++WNAM S YAQ       
Sbjct: 183 LFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEA 242

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+ +M   G+ PD  T+V  +SSC+ +G  ++   + + I       N F+  AL++M
Sbjct: 243 LNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDM 302

Query: 193 YARCGNLKKARAI--------------------------------FDGMPRKTVVSWTAI 220
           +A+ GNL+ AR I                                FD MP++ VVSW ++
Sbjct: 303 HAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSM 362

Query: 221 IGGYGIHGHGEVAVQLFDEMLKS-GIRPDGTAFVSVLSACSHAGLTDKGLEYF-YGMKNK 278
           I GY  +G   ++++LF EM+    I+PD     SVLSAC H G     L Y+   +  +
Sbjct: 363 IAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALK--LSYWVLDIVRE 420

Query: 279 YGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
             ++ G   +  ++ +  + G + +A  + ++M
Sbjct: 421 KNIKLGISGFNSLIFMYSKCGSVADAHRIFQTM 453



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 144/347 (41%), Gaps = 56/347 (16%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           Y+ ++  Y      ++ VSLF       +       + L+ +    G L+     H   +
Sbjct: 68  YSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNLF-----HAYVL 122

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K G   D  + N ++ MY K G VD  R LF+Q+ E+ L  WN+MISG  ++G  T  + 
Sbjct: 123 KLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVV 182

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+  M +  +    +T+                                    +++  YA
Sbjct: 183 LFNMMPARNI----ITWT-----------------------------------SMVTGYA 203

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           + G+L+ AR  FD MP ++VVSW A+   Y      + A+ LF +ML+ GI PD T +V 
Sbjct: 204 KMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVV 263

Query: 255 VLSACSHAG---LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            +S+CS  G   L D  L     M ++  +       T ++D+  + G L  A  + + +
Sbjct: 264 TISSCSSIGDPTLADSILR----MIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDEL 319

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGK-----VIKLEPMNTGY 353
             + +   W  ++ A      + LA   F       V+    M  GY
Sbjct: 320 GSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGY 366


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/509 (38%), Positives = 291/509 (57%), Gaps = 6/509 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + ++ LIS Y  +    +A  +F +M    V  N  ++  +L  C +  +L LG   H +
Sbjct: 316 ILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNL 375

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G + +  VGN LM MY KC +++   ++F  + +   ++WN +I GY Q+G A   
Sbjct: 376 AIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDA 435

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L ++ EM++  +    VTF  VL +CA+  +    +++   I+ + F ++  + N+LI+ 
Sbjct: 436 LSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDT 495

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG ++ A  +F+ +    VVSW +II  Y +HG    A++LFD M KS I+ +   F
Sbjct: 496 YAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNALELFDRMNKSDIKANDVTF 555

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           VS+LS C   GL ++GL  F  M   + ++P  EHYTC+V LLGRAG+L +AL+ I  + 
Sbjct: 556 VSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLLGRAGRLTDALKFIGDIP 615

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
             P   VW ALL +C +HKNV L   A  KV+ +EP +   YVLLSN+Y+ A  LD +  
Sbjct: 616 STPSPMVWRALLSSCVVHKNVALGRYAAEKVLDIEPHDETTYVLLSNMYAAAGILDEVAL 675

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
            R  MR   +KK+ G S+VE+KG VH F VG  +H     I  ML+ L NL    +G   
Sbjct: 676 WRKSMRNVGVKKEAGLSWVEIKGEVHAFSVGSADHPDMRIINAMLEWL-NLKASREGYVP 734

Query: 433 S-----DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
                    + EE      VHSE+LA+A+G+  T PG  I +MKNLR C DCH   K++S
Sbjct: 735 DINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPGHPIRIMKNLRSCLDCHTMFKVIS 794

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KIV R+ IVRD  RFHHF+ G CSC DYW
Sbjct: 795 KIVQREIIVRDINRFHHFEEGICSCGDYW 823



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 113/415 (27%), Positives = 187/415 (45%), Gaps = 11/415 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V + A++S Y  N +   A++ F KMR  G + N   +   L   V      LG   H 
Sbjct: 214 AVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHG 273

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             VK   D +  VG  L+ MY KCG ++    +F+ +P   +I W+ +IS YAQ+     
Sbjct: 274 CSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQ 333

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
             E++  M    V P+  +  GVL +CA++    +G ++       G+ S  F+ NAL++
Sbjct: 334 AFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMD 393

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+C N++ +  IF  +     VSW  II GY   G  E A+ +F EM  + +      
Sbjct: 394 MYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVT 453

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F SVL AC++       ++  + +  K            ++D   + G + +AL++ ES 
Sbjct: 454 FSSVLRACANTSSIKHAVQ-IHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFES- 511

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDG 369
           +VE D   W +++ A  +H     A   F ++ K  ++  +  +  LLS   S      G
Sbjct: 512 IVECDVVSWNSIISAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQG 571

Query: 370 IMRVRMMMRERRLKKDPGY--SYVELKGRV-----HLFMVGDRNHHQTVEIYRML 417
           +     MM + R+K    +    V L GR       L  +GD     +  ++R L
Sbjct: 572 LWLFNSMMMDHRIKPSMEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRAL 626



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 153/317 (48%), Gaps = 3/317 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  L+ GY L     EA+ LF +++ +G E+N   +  +L + V      L    H  
Sbjct: 114 VSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACGIHAC 173

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K G D +  VG  L+  Y  CG+V + R +FD +  K  +TW AM+S Y++N +  + 
Sbjct: 174 ACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYA 233

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L  + +M+  G  P+       L +   L +  +G  +        + + P +  AL++M
Sbjct: 234 LNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDM 293

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG+++ A AIF+ +P   V+ W+ +I  Y      E A ++F  M++S + P+  + 
Sbjct: 294 YAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSL 353

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
             VL AC++    + G E  + +  K G +        ++D+  +   +  +LE+  S L
Sbjct: 354 SGVLQACANIAFLELG-EQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSS-L 411

Query: 313 VEPDGAVWGALL-GACK 328
            + +   W  ++ G C+
Sbjct: 412 QDANEVSWNTIIVGYCQ 428



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 123/277 (44%), Gaps = 8/277 (2%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFG--LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE 110
            L  C+  G    G   H   V+ G    LD    N L+  Y K G +   R+LFD +PE
Sbjct: 51  FLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPE 110

Query: 111 KGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEV 170
           +  +++  ++ GYA  G     LEL+R ++  G   +      +L     + A  +   +
Sbjct: 111 RNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACGI 170

Query: 171 EQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHG 230
                  G   N F+  ALI+ Y+ CG +  AR +FDG+  K  V+WTA++  Y  +   
Sbjct: 171 HACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIP 230

Query: 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSA--CSHAGLTDKGLEYFYGMKNKYGLQPGPEHY 288
           E A+  F +M  +G +P+     S L A  C  + L  KG+   +G   K      P   
Sbjct: 231 EYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGI---HGCSVKTLYDTEPHVG 287

Query: 289 TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
             ++D+  + G + +A  + E M+   D  +W  L+ 
Sbjct: 288 GALLDMYAKCGDIEDAHAIFE-MIPHDDVILWSFLIS 323



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 5/142 (3%)

Query: 108 VPEKGLITWNAMISGYAQNGLATH--VLELYREMKSLGVCP-DAVTFVGVLSSCAHLGAH 164
           +  + L+   + I+G     LA +  +  L  E+ SL +   D+      L  C   G  
Sbjct: 2   IRSRSLLPTFSQINGLLSRNLAANEALQWLDDELASLALPKLDSYACARFLQRCIARGDA 61

Query: 165 SVGLEVEQQI-QANGFGS-NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIG 222
             G  V  ++ Q  G    + F  N L+N YA+ G L  AR +FDGMP +  VS+  ++ 
Sbjct: 62  RAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQ 121

Query: 223 GYGIHGHGEVAVQLFDEMLKSG 244
           GY + G  E A++LF  + + G
Sbjct: 122 GYALRGEFEEALELFRRLQREG 143


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/546 (38%), Positives = 306/546 (56%), Gaps = 32/546 (5%)

Query: 1    VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVD 59
            VFD  ++ T     +NAL++GY  N    +A+ LF +M  E     N+ T   +LP CV 
Sbjct: 592  VFDGVVRRT--VAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVR 649

Query: 60   PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
                      H   VK G   D  V N LM MY + G V+  + +F ++ ++ +++WN M
Sbjct: 650  CKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTM 709

Query: 120  ISGYAQNGLATHVLELYREMKS------------------LGVCPDAVTFVGVLSSCAHL 161
            I+G    G     L L  EM+                   +   P++VT + VL  CA L
Sbjct: 710  ITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAAL 769

Query: 162  GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
             A   G E+           +  + +AL++MYA+CG L  A  +FD MP + V++W  +I
Sbjct: 770  AALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLI 829

Query: 222  GGYGIHGHGEVAVQLFDEMLKSG------IRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
              YG+HG GE A++LF  M   G      IRP+   ++++ +ACSH+G+ D+GL  F+ M
Sbjct: 830  MAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTM 889

Query: 276  KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGA-VWGALLGACKIHKNVE 334
            K  +G++P  +HY C+VDLLGR+G++ EA ELI +M    +    W +LLGAC+IH++VE
Sbjct: 890  KASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVE 949

Query: 335  LAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELK 394
              E+A   +  LEP    +YVL+SNIYS A   D  + VR  M+E  ++K+PG S++E  
Sbjct: 950  FGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEHG 1009

Query: 395  GRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH----DGTKRSDQKNSEEHLNDTEVHSE 450
              VH F+ GD +H Q+ E++  L+ L   +++     D +      + EE       HSE
Sbjct: 1010 DEVHKFLSGDASHPQSKELHEYLETLSQRMRKEGYVPDISCVLHNVDDEEKETMLCGHSE 1069

Query: 451  KLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFC 510
            +LAIAFG++NT PGT I V KNLR+C DCH+  K++SKIVDR+ I+RD  RFHHF +G C
Sbjct: 1070 RLAIAFGLLNTPPGTTIRVAKNLRVCNDCHVATKIISKIVDREIILRDVRRFHHFANGTC 1129

Query: 511  SCKDYW 516
            SC DYW
Sbjct: 1130 SCGDYW 1135



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 157/331 (47%), Gaps = 10/331 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD- 59
           VFD+     H  V +N++I+          ++ LF  M  + V+  S T++ +   C   
Sbjct: 389 VFDDIPDRDH--VSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHV 446

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
            G + LG   H   ++ G DL     N L+TMY + G V+  + LF     K L++WN +
Sbjct: 447 RGGVRLGKQVHAYTLRNG-DLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTV 505

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG- 178
           IS  +QN      L     M   GV PD VT   VL +C+ L    +G E+      NG 
Sbjct: 506 ISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGD 565

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
              N F+  AL++MY  C   KK R +FDG+ R+TV  W A++ GY  +   + A++LF 
Sbjct: 566 LIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFV 625

Query: 239 EML-KSGIRPDGTAFVSVLSACSHAGL-TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           EM+ +S   P+ T F SVL AC    + +DK  E  +G   K G          ++D+  
Sbjct: 626 EMISESEFCPNATTFASVLPACVRCKVFSDK--EGIHGYIVKRGFGKDKYVQNALMDMYS 683

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           R G++ E  + I   + + D   W  ++  C
Sbjct: 684 RMGRV-EISKTIFGRMNKRDIVSWNTMITGC 713



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 141/312 (45%), Gaps = 7/312 (2%)

Query: 18  LISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFG 77
           L+     +S   +A+S +  M       ++     +L        L LG   H    KFG
Sbjct: 301 LLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFG 360

Query: 78  --LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLEL 135
                  +V N L+ MY KCG +   R++FD +P++  ++WN+MI+   +       L L
Sbjct: 361 HAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHL 420

Query: 136 YREMKSLGVCPDAVTFVGVLSSCAHL-GAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           +R M S  V P + T V V  +C+H+ G   +G +V      NG     + NNAL+ MYA
Sbjct: 421 FRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG-DLRTYTNNALVTMYA 479

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           R G +  A+A+F     K +VSW  +I     +   E A+     M+  G+RPDG    S
Sbjct: 480 RLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLAS 539

Query: 255 VLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           VL ACS       G E + Y ++N   L       T +VD+     Q  +   L+   +V
Sbjct: 540 VLPACSQLERLRIGREIHCYALRNG-DLIENSFVGTALVDMYCNCKQPKKG-RLVFDGVV 597

Query: 314 EPDGAVWGALLG 325
               AVW ALL 
Sbjct: 598 RRTVAVWNALLA 609


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/506 (38%), Positives = 286/506 (56%), Gaps = 3/506 (0%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
            V + A++S    N    E  +LF +M+ +GV  +  T+   L  C+    L LG   H  
Sbjct: 604  VSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGLGKVIHAC 663

Query: 73   CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
              + GL+ D +V N L+ MY  CG        F+ +  + L++WN M + YAQ GLA   
Sbjct: 664  VTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKEA 723

Query: 133  LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            + L+R+M+  GV PD +TF   L+        S G         +G  S+  +   L+ +
Sbjct: 724  VLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAAESGLDSDVSVATGLVKL 783

Query: 193  YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
            YA+CG L +A ++F G    TVV   AIIG    HG  E AV++F +M + G+RPD    
Sbjct: 784  YAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATL 843

Query: 253  VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            VS++SAC HAG+ ++G   F  MK  +G+ P  EHY C VDLLGRAGQL  A ++I  M 
Sbjct: 844  VSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKMP 903

Query: 313  VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
             E +  VW +LLG CK+  + EL E    ++++L+P N+  +V+LSNIY           
Sbjct: 904  FEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYCATGKWKDADV 963

Query: 373  VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
             R  M +  +K  PG S+ E+  +VH F+ GDR+H +T EIY +LDKLE L+    G + 
Sbjct: 964  DRKKMLDENVKNAPGMSWFEIGKQVHEFVAGDRSHPKTDEIYVVLDKLE-LLMRRAGYEA 1022

Query: 433  SDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIV 490
                + E+ L +  +  HSE++AIAFG+I T P T + ++KNLR+CGDCH   K +S ++
Sbjct: 1023 DKGLDVEDELKEKALGYHSERIAIAFGLIATPPETTLKIVKNLRVCGDCHTATKYISMVM 1082

Query: 491  DRQFIVRDATRFHHFKSGFCSCKDYW 516
             R+ IVRD+ RFHHF +G CSCKD W
Sbjct: 1083 GREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 170/342 (49%), Gaps = 16/342 (4%)

Query: 26  SLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSV 84
           S++ +  SL G +R ++  ++   T   LL  CVD   L  G   H +    GL+    +
Sbjct: 5   SIIRQLCSLSGAVRVDRAADLQEYT--ALLQSCVDSNDLAKGKHAHELIANAGLEQHLFL 62

Query: 85  GNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM-KSLG 143
           GNCL+ MYV+CGS++    +F ++ E+ +++W A+IS  AQ G       L+R M     
Sbjct: 63  GNCLINMYVRCGSLEEAHAIFSKMEERNVVSWTALISANAQCGAFARAFALFRTMLLESS 122

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF----GSNPFLNNALINMYARCGNL 199
             P++ T V +L++CA+    ++G  +   I   G      +   + NA+INMYA+CG+L
Sbjct: 123 AAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSL 182

Query: 200 KKARAIFDGMPRKTVVSWTAIIGGYGIHGHG-EVAVQLFDEMLKSGIRPDGTAFVSVLSA 258
           + A A+F  +P K VVSWTA+ G Y         A+++F EML   + P+   F++ L A
Sbjct: 183 EDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGA 242

Query: 259 CSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV--EPD 316
           C+   L D    + + + ++  L   P     ++++ G+ G    A  + ++M    E D
Sbjct: 243 CT--SLRDG--TWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELD 298

Query: 317 GAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
              W A++ A  +        +A  + ++LE M      L++
Sbjct: 299 LVSWNAMISA-SVEAGRHGDAMAIFRRLRLEGMRPNSVTLIT 339



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 156/343 (45%), Gaps = 6/343 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF E    +   V +N ++  Y  N    EA     +M + GV  ++++   +L  C   
Sbjct: 495 VFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSC--- 551

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
            Y         +C+         +   L++M+ +C  ++  R +F+++    +++W AM+
Sbjct: 552 -YCSQEAQVLRMCILESGYRSACLETALISMHGRCRELEQARSVFNEMDHGDVVSWTAMV 610

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           S  A+N     V  L+R M+  GV PD  T    L +C       +G  +   +   G  
Sbjct: 611 SATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGLGKVIHACVTEIGLE 670

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           ++  + NAL+NMY+ CG+ ++A + F+ M  + +VSW  +   Y   G  + AV LF +M
Sbjct: 671 ADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRQM 730

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
              G++PD   F + L+    + L   G + F+ +  + GL       T +V L  + G+
Sbjct: 731 QLEGVKPDKLTFSTTLNVSGGSALVSDG-KLFHALAAESGLDSDVSVATGLVKLYAKCGK 789

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
           L+EA+ L      +    +  A++GA   H   E A   F K+
Sbjct: 790 LDEAMSLFRGA-CDWTVVLLNAIIGALAQHGFSEEAVKMFWKM 831



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 160/341 (46%), Gaps = 13/341 (3%)

Query: 13  VCYNALISGYVLNS-LVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V + A+   Y        +A+ +F +M  Q +  N +T +  L  C     L  G   H 
Sbjct: 198 VSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTS---LRDGTWLHS 254

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP---EKGLITWNAMISGYAQNGL 128
           +  +  L  D    N L+ MY KCG  +    +F  +    E  L++WNAMIS   + G 
Sbjct: 255 LLHEASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGR 314

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAH-SVGLEVEQQIQANGFGSNPFLNN 187
               + ++R ++  G+ P++VT + +L++ A  G           +I  +G+  +  + N
Sbjct: 315 HGDAMAIFRRLRLEGMRPNSVTLITILNALAASGVDFGAARGFHGRIWESGYLRDVVIGN 374

Query: 188 ALINMYARCGNLKKARAIFDGMPRK-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           A+I+MYA+CG    A A+F  +  K  V+SW  ++G           V  F  ML +GI 
Sbjct: 375 AIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGID 434

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           P+  +F+++L+ACS++   D G +    +  +          T +V + G+ G ++EA  
Sbjct: 435 PNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAEL 494

Query: 307 LIESMLVEPDGAV-WGALLGACKIHKNVELAELAFGKVIKL 346
           + + M +     V W  +LGA   +   + ++ AFG ++++
Sbjct: 495 VFKEMPLPSRSLVTWNVMLGA---YAQNDRSKEAFGALMEM 532



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 126/252 (50%), Gaps = 5/252 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGY-LWLGMCCHC 71
           V +NA+IS  V      +A+++F ++R +G+  NSVT++ +L      G         H 
Sbjct: 300 VSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGVDFGAARGFHG 359

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK-GLITWNAMISGYAQNGLAT 130
              + G   D  +GN +++MY KCG       +F ++  K  +I+WN M+          
Sbjct: 360 RIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFG 419

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG-SNPFLNNAL 189
            V+  +  M   G+ P+ V+F+ +L++C++  A   G ++   I           +   L
Sbjct: 420 KVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATML 479

Query: 190 INMYARCGNLKKARAIFDGM--PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           ++MY +CG++ +A  +F  M  P +++V+W  ++G Y  +   + A     EML+ G+ P
Sbjct: 480 VSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLP 539

Query: 248 DGTAFVSVLSAC 259
           D  +F SVLS+C
Sbjct: 540 DALSFTSVLSSC 551


>gi|242055643|ref|XP_002456967.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
 gi|241928942|gb|EES02087.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
          Length = 785

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/514 (37%), Positives = 299/514 (58%), Gaps = 11/514 (2%)

Query: 13  VCYNALISGY------VLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLG 66
           + +NA+I+G+      V   +  EA+SL+ +M+ +G++ +  T   +L  C   G    G
Sbjct: 273 IVFNAMIAGFCRDEAAVGKEVSREALSLYSEMQSRGMQPSEFTFSSILRACNLAGEFGFG 332

Query: 67  MCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQN 126
              H   +K     D  +G+ L+ +Y   G ++ G + F  +P++ ++TW +MISG  QN
Sbjct: 333 KQIHGQVLKHSFHDDDYIGSALIDLYSDSGCMEDGYRCFRSLPKQDIVTWTSMISGCVQN 392

Query: 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
            L    L L++E    G+ PD  T   V+++CA L     G +++      GF     + 
Sbjct: 393 ELFEKALRLFQESICYGLKPDLFTMSSVMNACASLAVARTGEQIQCLAIKYGFNRFTAMG 452

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           N+ I+M AR G++      F  M  + VVSW+A+I  +  HG    A+++F+EM+ + + 
Sbjct: 453 NSFIHMCARSGDVDAVTRRFQEMESRDVVSWSAVISSHAQHGCARDALRIFNEMMNAKVA 512

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           P+   F++VL+ACSH GL D GL Y+  MKN+YGL P  +H TC+VDLLGRAG+L +A  
Sbjct: 513 PNEVTFLNVLTACSHGGLVDDGLRYYEIMKNEYGLSPTIKHVTCVVDLLGRAGRLADAEA 572

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366
            I       D  VW +LL +C+IH ++E  +L   +++ LEP ++  YV+L N+Y +A  
Sbjct: 573 FIRDSAFHDDAVVWRSLLASCRIHGDMERGQLVADQIMDLEPTSSASYVILYNMYLDAGE 632

Query: 367 LDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYR----MLDKLEN 422
           L    + R +M+ER +KK+PG S++EL+  VH F+ GD++H ++  IY+    ML K+E 
Sbjct: 633 LSLASKTRDLMKERGVKKEPGLSWIELRSGVHSFVAGDKSHPESNAIYKKLAEMLSKIEK 692

Query: 423 LVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLF 482
           L    + +  SD  +S E  N    HSEK+A+AFG+I+      I VMKNLR+C DCH  
Sbjct: 693 LANTDNASTGSDGISSSEQ-NLVGCHSEKIAVAFGMIHLPQSAPIRVMKNLRVCRDCHST 751

Query: 483 IKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +KL+S   +R+ I+RD  RFHHF+ G CSC DYW
Sbjct: 752 MKLISGSENREIILRDGIRFHHFRGGSCSCGDYW 785



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/389 (25%), Positives = 179/389 (46%), Gaps = 14/389 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD +    H  V +N+L+SGYV      E + +F  M   G+  NS  +  ++  C   
Sbjct: 160 VFDAA--EEHDDVSWNSLLSGYVRAGAREETLKVFSLMCHHGLGWNSFALGSIIKCCASG 217

Query: 61  GYL--WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
             +   +    H   VK GLD D  + + ++ MY K G++     LF  VP+  +I +NA
Sbjct: 218 SDVGRHIAEAVHGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVFNA 277

Query: 119 MISGYAQNGLAT------HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
           MI+G+ ++  A         L LY EM+S G+ P   TF  +L +C   G    G ++  
Sbjct: 278 MIAGFCRDEAAVGKEVSREALSLYSEMQSRGMQPSEFTFSSILRACNLAGEFGFGKQIHG 337

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
           Q+  + F  + ++ +ALI++Y+  G ++     F  +P++ +V+WT++I G   +   E 
Sbjct: 338 QVLKHSFHDDDYIGSALIDLYSDSGCMEDGYRCFRSLPKQDIVTWTSMISGCVQNELFEK 397

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
           A++LF E +  G++PD     SV++AC+   +   G E    +  KYG           +
Sbjct: 398 ALRLFQESICYGLKPDLFTMSSVMNACASLAVARTG-EQIQCLAIKYGFNRFTAMGNSFI 456

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI--KLEPMN 350
            +  R+G ++      + M    D   W A++ +   H     A   F +++  K+ P  
Sbjct: 457 HMCARSGDVDAVTRRFQEM-ESRDVVSWSAVISSHAQHGCARDALRIFNEMMNAKVAPNE 515

Query: 351 TGYYVLLSNIYSEARNLDGIMRVRMMMRE 379
             +  +L+         DG+    +M  E
Sbjct: 516 VTFLNVLTACSHGGLVDDGLRYYEIMKNE 544



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 154/345 (44%), Gaps = 17/345 (4%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGYLWLGMCCH 70
            V YN LIS Y    L   A+  F + R   G+ ++  T    L  C     L  G   H
Sbjct: 67  AVSYNLLISSYSRAGLPGRALETFARARAAAGLRVDRFTYAAALAACSRALDLRTGKAVH 126

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
            + V  GL     + N L +MY  CG +   R++FD   E   ++WN+++SGY + G   
Sbjct: 127 AMTVLDGLGNGVFLSNSLASMYASCGEMGEARRVFDAAEEHDDVSWNSLLSGYVRAGARE 186

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA----NGFGSNPFLN 186
             L+++  M   G+  ++     ++  CA      VG  + + +       G  ++ FL 
Sbjct: 187 ETLKVFSLMCHHGLGWNSFALGSIIKCCA--SGSDVGRHIAEAVHGCVVKAGLDADLFLA 244

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGY-------GIHGHGEVAVQLFDE 239
           +A+I+MYA+ G L  A A+F  +P   V+ + A+I G+       G     E A+ L+ E
Sbjct: 245 SAMIDMYAKRGALTNAVALFKSVPDPNVIVFNAMIAGFCRDEAAVGKEVSRE-ALSLYSE 303

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M   G++P    F S+L AC+ AG    G +  +G   K+         + ++DL   +G
Sbjct: 304 MQSRGMQPSEFTFSSILRACNLAGEFGFG-KQIHGQVLKHSFHDDDYIGSALIDLYSDSG 362

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI 344
            + +      S L + D   W +++  C  ++  E A   F + I
Sbjct: 363 CMEDGYRCFRS-LPKQDIVTWTSMISGCVQNELFEKALRLFQESI 406



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 132/270 (48%), Gaps = 13/270 (4%)

Query: 86  NCLMTMYVK--CGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL- 142
           N L+  Y +   G+  +  +L D++P +  +++N +IS Y++ GL    LE +   ++  
Sbjct: 38  NSLLAAYCRLGVGAPLHAARLIDEMPRRNAVSYNLLISSYSRAGLPGRALETFARARAAA 97

Query: 143 GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202
           G+  D  T+   L++C+       G  V      +G G+  FL+N+L +MYA CG + +A
Sbjct: 98  GLRVDRFTYAAALAACSRALDLRTGKAVHAMTVLDGLGNGVFLSNSLASMYASCGEMGEA 157

Query: 203 RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262
           R +FD       VSW +++ GY   G  E  +++F  M   G+  +  A  S++  C+  
Sbjct: 158 RRVFDAAEEHDDVSWNSLLSGYVRAGAREETLKVFSLMCHHGLGWNSFALGSIIKCCASG 217

Query: 263 GLTDKGL-EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWG 321
               + + E  +G   K GL       + M+D+  + G L  A+ L +S + +P+  V+ 
Sbjct: 218 SDVGRHIAEAVHGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALFKS-VPDPNVIVFN 276

Query: 322 ALL-GACKIHKNVELAELAFGKVIKLEPMN 350
           A++ G C+        E A GK +  E ++
Sbjct: 277 AMIAGFCR-------DEAAVGKEVSREALS 299


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/528 (38%), Positives = 300/528 (56%), Gaps = 14/528 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVD 59
           VFD    S      +NA+I GY    +  EA+ LF +M  E G      TM  +LP C  
Sbjct: 329 VFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACAR 388

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
                     H   VK G+  +  V N LM MY + G  D  R++F  V    +++WN +
Sbjct: 389 SEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTL 448

Query: 120 ISGYAQNGLATHVLELYREMKSL---GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
           I+G    G      +L REM+ L   GV P+A+T + +L  CA L A + G E+      
Sbjct: 449 ITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVR 508

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
           +   ++  + +AL++MYA+CG L  +RA+FD +PR+  ++W  +I  YG+HG G  A  L
Sbjct: 509 HALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVL 568

Query: 237 FDEMLKSG-IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295
           FD M  SG  RP+   F++ L+ACSH+G+ D+GL+ F+ M+  +G++P P+   C+VD+L
Sbjct: 569 FDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDIL 628

Query: 296 GRAGQLNEALELIESMLV-EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           GRAG+L+EA  ++ SM   E   + W  +LGAC++H+NV L E+A  ++++LEP    +Y
Sbjct: 629 GRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHY 688

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
           VLL NIYS A        VR  MR R + K+PG S++E+ G +H FM G+  H  + E++
Sbjct: 689 VLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVH 748

Query: 415 RMLDKLENLVQEHDGTKRSDQKNSEEHLNDTE------VHSEKLAIAFGIINTSPGTEIV 468
             ++ L   +     T   D       ++D +       HSEKLAIAFG++  +PG  I 
Sbjct: 749 AHMEALWGEMVARGYTP--DTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIR 806

Query: 469 VMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           V KNLR+C DCH   K +SK+V R+ ++RD  RFHHF++G CSC DYW
Sbjct: 807 VAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 854



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 166/346 (47%), Gaps = 16/346 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLP----I 56
           VF     S H  V +N+LIS   L      A++    M   G  + S T++ +L     +
Sbjct: 116 VFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHL 175

Query: 57  CVDPGYLWLGMCCHCICVKFGL---DLDFSVGNCLMTMYVKCGSVDYGRKLF-DQVPEKG 112
                 + LG   H   +K GL      F+  N L++MY + G V   ++LF    P +G
Sbjct: 176 PAAAAAVRLGREAHAFALKNGLLHGHQRFAF-NALLSMYARLGLVADAQRLFAGATPGRG 234

Query: 113 -LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVE 171
            ++TWN M+S   Q+G+    ++   +M +LGV PD VTF   L +C+ L    VG E+ 
Sbjct: 235 DVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMH 294

Query: 172 QQ-IQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIHG 228
              I+ +   +N F+ +AL++MYA    + KAR +FD +P   K +  W A+I GY   G
Sbjct: 295 AYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAG 354

Query: 229 HGEVAVQLFDEM-LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH 287
             E A++LF  M  ++G  P  T   SVL AC+ +     G E  +G   K G+      
Sbjct: 355 MDEEALRLFARMEAEAGFVPCETTMASVLPACARSE-AFAGKEAVHGYVVKRGMAGNRFV 413

Query: 288 YTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNV 333
              ++D+  R G+ + A  +  +M+  PD   W  L+  C +  +V
Sbjct: 414 QNALMDMYARLGKTDVARRIF-AMVDLPDVVSWNTLITGCVVQGHV 458



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 123/257 (47%), Gaps = 19/257 (7%)

Query: 83  SVGNCLMTMYVKCGSVDYGRKLFDQVPEKG--LITWNAMISGYAQNGLATHVLELYREMK 140
           +V N L+T Y +CG +    ++F  + +     +++N++IS         H L   R M 
Sbjct: 95  AVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAML 154

Query: 141 SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA----NGF--GSNPFLNNALINMYA 194
           + G    + T V VL + +HL A +  + + ++  A    NG   G   F  NAL++MYA
Sbjct: 155 AGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYA 214

Query: 195 RCGNLKKARAIFDGMP--RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           R G +  A+ +F G    R  VV+W  ++      G  + AVQ   +M+  G+RPDG  F
Sbjct: 215 RLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTF 274

Query: 253 VSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            S L ACS   L D G E + Y +K+   L       + +VD+     Q+ +A ++ + +
Sbjct: 275 ASALPACSRLELLDVGREMHAYVIKDDE-LAANSFVASALVDMYATHEQVGKARQVFDMV 333

Query: 312 LVEPDG----AVWGALL 324
              PD      +W A++
Sbjct: 334 ---PDSGKQLGMWNAMI 347



 Score = 39.3 bits (90), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 84/217 (38%), Gaps = 43/217 (19%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKT--VVSWTAIIGGYGIHGHGEVAVQLFDE 239
           +P + NAL+  YARCG L  A  +F  +       VS+ ++I    +    + A+     
Sbjct: 93  SPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRA 152

Query: 240 MLKSGIRPDGTAFVSVLSACSH----AGLTDKGLE-YFYGMKNKY--------------- 279
           ML  G        VSVL A SH    A     G E + + +KN                 
Sbjct: 153 MLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSM 212

Query: 280 ---------------GLQPGPEH---YTCMVDLLGRAGQLNEALELIESML---VEPDGA 318
                          G  PG      +  MV +L ++G  +EA++ +  M+   V PDG 
Sbjct: 213 YARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGV 272

Query: 319 VWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV 355
            + + L AC   + +++       VIK + +    +V
Sbjct: 273 TFASALPACSRLELLDVGREMHAYVIKDDELAANSFV 309


>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
          Length = 648

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/477 (41%), Positives = 280/477 (58%), Gaps = 37/477 (7%)

Query: 77  GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV---------------------------- 108
           G D    V N L+  YV CG V   RK+FD++                            
Sbjct: 172 GFDRHRFVENSLIGAYVACGDVGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVF 231

Query: 109 ---PEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHS 165
              P K ++ W AM++GYAQN +    LE++  M  LG+  D V+  G +S+CA LGA  
Sbjct: 232 GRCPVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALR 291

Query: 166 VGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYG 225
               V++  +  GFG+N  + + L++MYA+CG + +A  +F GM  K V +++++I G  
Sbjct: 292 RAAWVQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLA 351

Query: 226 IHGHGEVAVQLFDEML-KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG 284
            HG    A+ LF EM+ ++ + P+   F+ VL+ACSHAG+  +G  YF  MK+KYG+ P 
Sbjct: 352 SHGRASEAIALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPS 411

Query: 285 PEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI 344
            +HY CMVDLLGRAG ++EAL+L+ SM V P G VWGALLGAC+IH   E+A++    + 
Sbjct: 412 ADHYACMVDLLGRAGLVDEALDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEHLF 471

Query: 345 KLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELK-GRVHLFMVG 403
           KLEP + G YVLLSNI + A   + + +VR++MR++RLKKDP  S  E + G VH F  G
Sbjct: 472 KLEPESIGNYVLLSNILASAGKWEEVSKVRILMRKQRLKKDPAVSLFEGRDGLVHQFFAG 531

Query: 404 DRNHHQTVEIYR-MLDKLENLVQEHDGTKRSD---QKNSEEHLNDTEVHSEKLAIAFGII 459
           D  H +T EI + +L+ +  L  E      S      N EE       HSEKLA++FG++
Sbjct: 532 DNAHPRTHEIKKALLELVAKLKLEGYVPILSSIVYDVNDEEKERLLMGHSEKLALSFGLL 591

Query: 460 NTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
               G  I ++KNLRIC DCHLF++LVS++   + IVRD  RFHHFK+G CSC  +W
Sbjct: 592 TLGSGCTIRIIKNLRICDDCHLFMQLVSRVESVEIIVRDNMRFHHFKNGECSCGGFW 648



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 126/236 (53%), Gaps = 9/236 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+++GY  N++  +A+ +F +M E G+ I+ V++   +  C   G L        I
Sbjct: 240 VAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALRRAAWVQEI 299

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             + G   +  VG+ L+ MY KCG +D   K+F  + EK + T+++MI+G A +G A+  
Sbjct: 300 AERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGRASEA 359

Query: 133 LELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--AL 189
           + L++EM     V P+ VTF+GVL++C+H G    G     Q++ + +G  P  ++   +
Sbjct: 360 IALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMK-DKYGIMPSADHYACM 418

Query: 190 INMYARCGNLKKARAIFDGM---PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
           +++  R G + +A  +   M   P   V  W A++G   IHG  E+A  + + + K
Sbjct: 419 VDLLGRAGLVDEALDLVRSMSVTPHGGV--WGALLGACRIHGKSEIAKVVAEHLFK 472



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 86/227 (37%), Gaps = 79/227 (34%)

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI------------ 220
            +   GF  + F+ N+LI  Y  CG++  AR +FD M  K V+SWT+I            
Sbjct: 167 SVLVGGFDRHRFVENSLIGAYVACGDVGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRS 226

Query: 221 -------------------IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261
                              + GY  +     A+++FD M + G+  D  +    +SAC+ 
Sbjct: 227 AEEVFGRCPVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQ 286

Query: 262 -----------------------------------AGLTDKGLEYFYGM--KNKYGLQPG 284
                                               GL D+  + FYGM  KN Y     
Sbjct: 287 LGALRRAAWVQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYT---- 342

Query: 285 PEHYTCMVDLLGRAGQLNEALELIESML----VEPDGAVWGALLGAC 327
              Y+ M+  L   G+ +EA+ L + M+    VEP+   +  +L AC
Sbjct: 343 ---YSSMIAGLASHGRASEAIALFKEMVNRANVEPNHVTFIGVLTAC 386


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/457 (40%), Positives = 273/457 (59%), Gaps = 7/457 (1%)

Query: 66  GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
           G   HC  VK G+  +  V   L+ MY  CG +D  R++FD++ E  ++ +NA+I   A+
Sbjct: 131 GKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLAR 190

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
           N  A   L L+RE++ +G+ P  VT + VLSSCA LG+  +G  + + ++  GF     +
Sbjct: 191 NNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRYVKV 250

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
           N  LI+MYA+CG+L  A  +F  MP++   +W+AII  Y  HG G  A+ + +EM K  +
Sbjct: 251 NTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKV 310

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
           +PD   F+ +L ACSH GL ++G EYF+GM N+YG+ P  +HY CMVDLLGRAG+L+EA 
Sbjct: 311 QPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAY 370

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR 365
           + I+ + ++P   +W  LL AC  H NVE+ +    ++ +L+  + G YV+ SN+ +   
Sbjct: 371 KFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERIFELDDSHGGDYVIFSNLCARYG 430

Query: 366 NLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL----- 420
             D +  +R  M ++   K PG S +E+   VH F  G+  H  +  ++R LD+L     
Sbjct: 431 KWDDVNHLRKTMIDKGAVKIPGCSSIEVNNVVHEFFAGEGVHSTSTTLHRALDELVKELK 490

Query: 421 -ENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDC 479
               V +      +D ++ E+ +     HSEKLAI FG++NT PGT I V+KNLR+CGDC
Sbjct: 491 SAGYVPDTSLVFYADMEDEEKEI-ILRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDC 549

Query: 480 HLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           H   K +S I  RQ I+RD  RFHHFK G CSC DYW
Sbjct: 550 HNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 586



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 121/233 (51%), Gaps = 4/233 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V YNA+I     N+  +EA++LF +++E G++   VTML +L  C   G L LG   H  
Sbjct: 179 VAYNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEY 238

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K+G D    V   L+ MY KCGS+D    +F  +P++    W+A+I  YA +G     
Sbjct: 239 VKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQA 298

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           + +  EMK   V PD +TF+G+L +C+H G    G E    +  N +G  P + +   ++
Sbjct: 299 ISMLNEMKKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGM-TNEYGIVPSIKHYGCMV 357

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
           ++  R G L +A    D +P + T + W  ++     HG+ E+  ++ + + +
Sbjct: 358 DLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERIFE 410



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 110/235 (46%), Gaps = 17/235 (7%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
            S+++  +LFDQ+ +  ++ +N M  GYA+      ++  +R       C   V+ V  L
Sbjct: 75  ASMEHAHQLFDQITQPNIVLFNTMARGYARLNDPLRMITHFRR------CLRLVSKVKAL 128

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
           +    L   +V L         G   N ++   LINMY  CG++  +R +FD +    VV
Sbjct: 129 AEGKQLHCFAVKL---------GVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVV 179

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           ++ AII     +     A+ LF E+ + G++P     + VLS+C+  G  D G  + +  
Sbjct: 180 AYNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLG-RWMHEY 238

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
             KYG     +  T ++D+  + G L++A+ +   M  + D   W A++ A   H
Sbjct: 239 VKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDM-PKRDTQAWSAIIVAYATH 292


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/553 (37%), Positives = 312/553 (56%), Gaps = 59/553 (10%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +N++I+GY        A+  F  M +   ++ +  T+  +L  C +   L LG   H 
Sbjct: 243 VSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHA 302

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSV--------------------------------- 98
             V+  +D+  +VGN L++MY K G+V                                 
Sbjct: 303 HIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDI 362

Query: 99  DYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC 158
           D  R +FD +  + ++ W AMI GYAQNGL +  L L+R M   G  P+  T   VLS  
Sbjct: 363 DPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVI 422

Query: 159 AHLGA-------HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM-P 210
           + L +       H+V + +E+        S+  + NALI MY+R G++K AR IF+ +  
Sbjct: 423 SSLASLDHGKQLHAVAIRLEEV-------SSVSVGNALITMYSRSGSIKDARKIFNHICS 475

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270
            +  ++WT++I     HG G  A++LF++ML+  ++PD   +V VLSAC+H GL ++G  
Sbjct: 476 YRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKS 535

Query: 271 YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           YF  MKN + ++P   HY CM+DLLGRAG L EA   I +M +EPD   WG+LL +C++H
Sbjct: 536 YFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVH 595

Query: 331 KNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSY 390
           K V+LA++A  K++ ++P N+G Y+ L+N  S     +   +VR  M+++ +KK+ G+S+
Sbjct: 596 KYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSW 655

Query: 391 VELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEV--- 447
           V++K +VH+F V D  H Q   IY M+ K+   +++      +   NS  H  + EV   
Sbjct: 656 VQIKNKVHIFGVEDALHPQRDAIYCMISKIWKEIKKMGFIPDT---NSVLHDLEQEVKEQ 712

Query: 448 ----HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFH 503
               HSEKLAIAF +INT   T + +MKNLR+C DCH  I+ +S +V+R+ IVRDATRFH
Sbjct: 713 ILRHHSEKLAIAFALINTPKHTTVRIMKNLRVCNDCHSAIRYISLLVEREIIVRDATRFH 772

Query: 504 HFKSGFCSCKDYW 516
           HFK G CSC+DYW
Sbjct: 773 HFKDGSCSCQDYW 785



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 118/459 (25%), Positives = 176/459 (38%), Gaps = 104/459 (22%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  +    +V +  +I GY    L   AV  F +M   G+     T   +L  C   
Sbjct: 101 VFDEIPQPD--SVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAA 158

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCG------------------------ 96
             L +G   H   VK G      V N L+ MY KCG                        
Sbjct: 159 QALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMI 218

Query: 97  -------SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM-KSLGVCPDA 148
                    D    LFDQ+ +  +++WN++I+GY   G     LE +  M KS  + PD 
Sbjct: 219 SMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDK 278

Query: 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC------------ 196
            T   VLS+CA+  +  +G ++   I          + NALI+MYA+             
Sbjct: 279 FTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEI 338

Query: 197 ---------------------GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQ 235
                                G++  ARAIFD +  + VV+WTA+I GY  +G    A+ 
Sbjct: 339 TGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALV 398

Query: 236 LFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEY------------------FYGMKN 277
           LF  M++ G +P+     +VLS  S     D G +                      M +
Sbjct: 399 LFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYS 458

Query: 278 KYGLQPGPEH-------------YTCMVDLLGRAGQLNEALELIESML---VEPDGAVWG 321
           + G                    +T M+  L + G  NEA+EL E ML   ++PD   + 
Sbjct: 459 RSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYV 518

Query: 322 ALLGACKIHKNVELAELAFG---KVIKLEPMNTGYYVLL 357
            +L AC     VE  +  F     V  +EP ++ Y  ++
Sbjct: 519 GVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMI 557



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 139/283 (49%), Gaps = 22/283 (7%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N +++ + K G++D  R++FD++P+   ++W  MI GY   GL    +  +  M S G+ 
Sbjct: 83  NTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGIS 142

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P   TF  VL+SCA   A  VG +V   +   G      + N+L+NMYA+CG+   A+ +
Sbjct: 143 PTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVV 202

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           FD M  K   +W  +I  +      ++A+ LFD+M      PD  ++ S+++   H G  
Sbjct: 203 FDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTD----PDIVSWNSIITGYCHQGYD 258

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL---IESMLVEPD----GA 318
            + LE F  M     L+  P+ +T    L   A +  E+L+L   I + +V  D    GA
Sbjct: 259 IRALETFSFMLKSSSLK--PDKFTLGSVLSACANR--ESLKLGKQIHAHIVRADVDIAGA 314

Query: 319 VWGALL------GACKI-HKNVELAELAFGKVIKLEPMNTGYY 354
           V  AL+      GA ++ H+ VE+       VI    +  GY+
Sbjct: 315 VGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYF 357



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 5/106 (4%)

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
           FL N L+N+Y + G+   A  +FD MP KT  SW  I+  +   G+ + A ++FDE+ + 
Sbjct: 49  FLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQ- 107

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYT 289
              PD  ++ +++   +H GL    +  F  M +  G+ P    +T
Sbjct: 108 ---PDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSS-GISPTQFTFT 149


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/522 (37%), Positives = 303/522 (58%), Gaps = 25/522 (4%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N +I+ Y   +    A++++ ++R+   E+++     +L  C    +  LG   H   +
Sbjct: 127 WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 186

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW----NAMISGYAQNGLAT 130
           K GLD D  VGN LM MY +C  V+Y R +FD++ E+ +++W     A++  YA+ G   
Sbjct: 187 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGHLG 246

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF------ 184
              +L+  +    V    V++  +++ C        G ++  ++Q      N        
Sbjct: 247 LARQLFNGLTQKTV----VSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLNKE 302

Query: 185 -------LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
                  LN AL++MYA+CG++  A  +F     + +  W AII G+ +HG+GE A+ +F
Sbjct: 303 RVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIF 362

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
            EM + G++P+   F+ +L ACSHAGL  +G + F  M + +GL P  EHY CMVDLLGR
Sbjct: 363 AEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGR 422

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
           AG L+EA E+I+SM ++P+  VWGAL+ AC++HKN +L ELA  +++++EP N GY VL+
Sbjct: 423 AGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLM 482

Query: 358 SNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML 417
           SNIY+ A        VR  M+   +KK+PG+S +E+ G VH F++GD++H Q   I  ML
Sbjct: 483 SNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEML 542

Query: 418 DKLENLVQE----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
            ++   + E     D +      + EE       HSEKLA+AFG+I+T+P T I ++KNL
Sbjct: 543 AEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNL 602

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDY 515
           R+C DCH   KL+SKI  R  IVRD  RFHHF+ G+CSC DY
Sbjct: 603 RVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDY 644



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 127/248 (51%), Gaps = 28/248 (11%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+I+G + ++ + E   LF +M+E+ +  N +TML                     
Sbjct: 261 VSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLN-------------------- 300

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K  +++D  +   L+ MY KCG ++   +LF +   + +  WNA+I+G+A +G     
Sbjct: 301 --KERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEA 358

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           L+++ EM+  GV P+ +TF+G+L +C+H G  + G ++ +++  + FG  P + +   ++
Sbjct: 359 LDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKM-VHTFGLVPQIEHYGCMV 417

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++  R G L +A  +   MP +   + W A++    +H + ++      ++L+  I P+ 
Sbjct: 418 DLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLE--IEPEN 475

Query: 250 TAFVSVLS 257
             +  ++S
Sbjct: 476 CGYNVLMS 483


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/540 (35%), Positives = 295/540 (54%), Gaps = 36/540 (6%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T+ +  +I+GY  N    EA+ L  ++   G+  +  ++  +   C +   L  G   H 
Sbjct: 384 TISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHS 443

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + VK G   +    N L+TMY KC +++Y R++F ++  K +++WN+ ++   QN L   
Sbjct: 444 LAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDE 503

Query: 132 VLELYREM----------------------KSLGV---------CPDAVTFVGVLSSCAH 160
               +  M                      +++G           P++     +L  C  
Sbjct: 504 ARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGS 563

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           LGA  +G ++       G  S   + NALI+MY +CG    +R IFD M  + + +W  I
Sbjct: 564 LGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLMEERDIFTWNTI 622

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           I GY  HG G  A++++  M  +G+ P+   FV +L+ACSHAGL D+G ++F  M   YG
Sbjct: 623 ITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYG 682

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           L P PEHY CMVDLLGR G +  A + I  M +EPD  +W ALLGACKIHKN E+ + A 
Sbjct: 683 LTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAA 742

Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400
            K+ ++EP N G YV+LSNIYS       +  VR +M+++ + K+PG S+ ++K ++H F
Sbjct: 743 EKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSF 802

Query: 401 MVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAF 456
           + GD+ H Q  EI   L++L  L++       ++      + E+  +    HSEKLA+A+
Sbjct: 803 VTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAY 862

Query: 457 GIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            ++ T  G  I ++KNLRICGDCH FIK VS +  RQ  +RD  RFHHF++G CSC+D+W
Sbjct: 863 CLLATPKGMPIQILKNLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 111/216 (51%), Gaps = 8/216 (3%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+T Y++ G V+  ++LFD++P +  I+W  MI+GYAQNG +   L L +E+   G+ 
Sbjct: 357 NALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGML 416

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P   +   +  +C+++ A   G +V       G   N F  NALI MY +C N++ AR +
Sbjct: 417 PSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQV 476

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           F  M  K +VSW + +     +   + A   FD ML      D  ++ +++SA +HA  +
Sbjct: 477 FSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSR----DDVSWTTIISAYAHAEQS 532

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301
           ++ +  F  M  ++ L   P     +  LLG  G L
Sbjct: 533 NEAMGAFKTMFCEHELPNSP----ILTILLGVCGSL 564



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 118/266 (44%), Gaps = 44/266 (16%)

Query: 94  KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVG 153
           + G V   R++FD +P + +I WN+MIS Y  NG+     +LY  +    +   A+    
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAI---- 101

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
           +LS    LG     LE  +++       N    NA+I+ Y + G++  AR +FD MP + 
Sbjct: 102 LLSGYGRLGR---VLEA-RRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRD 157

Query: 214 V-------------------------------VSWTAIIGGYG-IHGHGEVAVQLFDEML 241
           V                               VSWT +I GYG I  HG+ A  +F +M 
Sbjct: 158 VSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGK-AWDIFCKMH 216

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR-AGQ 300
           + G+ PD + F S LSA    G  D  LE    +  K G +      T ++++  R    
Sbjct: 217 REGLLPDQSNFASALSAVKGLGNLDV-LESLRVLALKTGFERDVVIGTAILNVYSRDTSV 275

Query: 301 LNEALELIESMLVEPDGAVWGALLGA 326
           L+ A++  ESM +E +   W  ++ A
Sbjct: 276 LDTAIKFFESM-IERNEYTWSTMIAA 300



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 124/312 (39%), Gaps = 51/312 (16%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD  ++    TV +NA+IS YV N  ++ A  LF  M  +                   
Sbjct: 118 VFDGMLERN--TVAWNAMISCYVQNGDITMARRLFDAMPSR------------------- 156

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
                               D S  N ++T Y     +   R LF+++PE+ L++W  MI
Sbjct: 157 --------------------DVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMI 196

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGY +        +++ +M   G+ PD   F   LS+   LG   V   +       GF 
Sbjct: 197 SGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFE 256

Query: 181 SNPFLNNALINMYAR-CGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            +  +  A++N+Y+R    L  A   F+ M  +   +W+ +I      G  + A+ +++ 
Sbjct: 257 RDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYER 316

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
                I    TA ++ L+ C   G  D     F  +      +P    +  ++    + G
Sbjct: 317 DPVKSIACR-TALITGLAQC---GRIDDARILFEQIP-----EPIVVSWNALITGYMQNG 367

Query: 300 QLNEALELIESM 311
            +NEA EL + M
Sbjct: 368 MVNEAKELFDKM 379



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 11/142 (7%)

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           +A I    R G + +AR +FD MPR+ +++W ++I  Y  +G  + A  L+D +    +R
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR 97

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
                   +LS     G   +    F GM     L+     +  M+    + G +  A  
Sbjct: 98  TGAI----LLSGYGRLGRVLEARRVFDGM-----LERNTVAWNAMISCYVQNGDITMARR 148

Query: 307 LIESMLVEPDGAVWGALL-GAC 327
           L ++M    D + W ++L G C
Sbjct: 149 LFDAM-PSRDVSSWNSMLTGYC 169


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/554 (36%), Positives = 311/554 (56%), Gaps = 52/554 (9%)

Query: 15  YNALISGYVLNSLVSE--AVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +N +I G+  +       A++LF +M  ++ VE N  T   +L  C   G +  G   H 
Sbjct: 93  WNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHG 152

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCG----------------------------------- 96
           + +K+G   D  V + L+ MYV CG                                   
Sbjct: 153 LALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWN 212

Query: 97  ----------SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCP 146
                          R LFD++ ++ +++WN MISGY+ NG     +E++REMK   + P
Sbjct: 213 VMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRP 272

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF 206
           + VT V VL + + LG+  +G  +    + +G   +  L +ALI+MY++CG ++KA  +F
Sbjct: 273 NYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVF 332

Query: 207 DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD 266
           + +PR+ V++W+A+I G+ IHG    A+  F +M ++G+RP   A++++L+ACSH GL +
Sbjct: 333 ERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVE 392

Query: 267 KGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
           +G  YF  M +  GL+P  EHY CMVDLLGR+G L+EA E I +M ++PD  +W ALLGA
Sbjct: 393 EGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGA 452

Query: 327 CKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDP 386
           C++  NVE+ +     ++ + P ++G YV LSN+Y+   N   +  +R+ M+E+ ++KDP
Sbjct: 453 CRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDP 512

Query: 387 GYSYVELKGRVHLFMVGDRNHHQTVEIYRML----DKLENLVQEHDGTKRSDQKNSEEHL 442
           G S +++ G +H F+V D +H +  EI  ML    DKL         T+       E+  
Sbjct: 513 GCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKE 572

Query: 443 NDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRF 502
           N    HSEK+A AFG+I+TSPG  I ++KNLRIC DCH  IKL+SK+  R+  VRD  RF
Sbjct: 573 NVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRF 632

Query: 503 HHFKSGFCSCKDYW 516
           HHF+ G CSC DYW
Sbjct: 633 HHFQDGSCSCMDYW 646



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 139/269 (51%), Gaps = 3/269 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +N +ISGY LN    +AV +F +M++  +  N VT++ +LP     G L LG   H 
Sbjct: 239 VVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHL 298

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                G+ +D  +G+ L+ MY KCG ++    +F+++P + +ITW+AMI+G+A +G A  
Sbjct: 299 YAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGD 358

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLE-VEQQIQANGFGSNPFLNNALI 190
            ++ + +M+  GV P  V ++ +L++C+H G    G     Q +  +G          ++
Sbjct: 359 AIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMV 418

Query: 191 NMYARCGNLKKARAIFDGMPRKT-VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++  R G L +A      MP K   V W A++G   + G+ E+  ++ + +L   +  D 
Sbjct: 419 DLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVAN-ILMDMVPHDS 477

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNK 278
            A+V++ +  +  G   +  E    MK K
Sbjct: 478 GAYVALSNMYASQGNWSEVSEMRLRMKEK 506



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 138/312 (44%), Gaps = 52/312 (16%)

Query: 97  SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLEL---YREMKSLGVCPDAVTFVG 153
            +DY  K+F+Q+P++   +WN +I G++++     ++ +   Y  M    V P+  TF  
Sbjct: 74  DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPS 133

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARA--------- 204
           VL +CA  G    G ++       GFG + F+ + L+ MY  CG +K AR          
Sbjct: 134 VLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEK 193

Query: 205 ------------------------------------IFDGMPRKTVVSWTAIIGGYGIHG 228
                                               +FD M +++VVSW  +I GY ++G
Sbjct: 194 DMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNG 253

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY 288
             + AV++F EM K  IRP+    VSVL A S  G  + G E+ +      G++      
Sbjct: 254 FFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELG-EWLHLYAEDSGIRIDDVLG 312

Query: 289 TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--L 346
           + ++D+  + G + +A+ + E +  E +   W A++    IH     A   F K+ +  +
Sbjct: 313 SALIDMYSKCGIIEKAIHVFERLPRE-NVITWSAMINGFAIHGQAGDAIDCFCKMRQAGV 371

Query: 347 EPMNTGYYVLLS 358
            P +  Y  LL+
Sbjct: 372 RPSDVAYINLLT 383


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/504 (38%), Positives = 296/504 (58%), Gaps = 46/504 (9%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            + +N +I+GY +   + EA  LF +M E+    N V+              W       
Sbjct: 97  VISWNTIINGYAIVGKIDEAKRLFDEMPER----NLVS--------------W------- 131

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                         N +++ +VKCG+V+    LF ++P + +++WN+M++ YAQ G    
Sbjct: 132 --------------NSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNE 177

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L L+ +M+++GV P   T V +LS+CAHLGA   GL +   I  N    N  +  AL++
Sbjct: 178 ALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVD 237

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+CG +  A  +F+ M  K V++W  II G  IHGH + A QLF EM ++ + P+   
Sbjct: 238 MYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDIT 297

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           FV++LSACSHAG+ D+G +    M + YG++P  EHY C++DLL RAG L EA+ELI +M
Sbjct: 298 FVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTM 357

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            +EP+ +  GALLG C+IH N EL E+   ++I L+P ++G Y+LLSNIY+ A+  D   
Sbjct: 358 PMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDAR 417

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
           +VR +M+   + K PG S +ELKG VH F+ GD +H ++ +IY  L+++   ++   G  
Sbjct: 418 KVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYDKLNEIHTRLKSAIGYS 477

Query: 432 RSDQKN------SEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
            +D  N       E+  +   VHSEKLAIA+G+++      I ++KNLR+C DCH   KL
Sbjct: 478 -ADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKL 536

Query: 486 VSKIVDRQFIVRDATRFHHFKSGF 509
           +SK+  R+ IVRD  RFHHF+ GF
Sbjct: 537 ISKVYGREIIVRDRNRFHHFEDGF 560



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 153/308 (49%), Gaps = 12/308 (3%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           ++  C +    W G+  H   VK G + D  + N L+ +Y     +   ++LF    ++ 
Sbjct: 6   VIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLCSDRD 65

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
           +++WNAMI GY + G   H   ++  M    VC D +++  +++  A +G       +  
Sbjct: 66  VVSWNAMIDGYVKRGEMGHTRMVFDRM----VCRDVISWNTIINGYAIVGKIDEAKRLFD 121

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
           ++      S     N++++ + +CGN+++A  +F  MP + VVSW +++  Y   G    
Sbjct: 122 EMPERNLVS----WNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNE 177

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
           A+ LFD+M   G++P     VS+LSAC+H G  DKGL + +   N   ++      T +V
Sbjct: 178 ALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGL-HLHTYINDNRIEVNSIVGTALV 236

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG--KVIKLEPMN 350
           D+  + G+++ A ++  +M  + D   W  ++    IH +V+ A+  F   K   +EP +
Sbjct: 237 DMYAKCGKISLATQVFNAMESK-DVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPND 295

Query: 351 TGYYVLLS 358
             +  +LS
Sbjct: 296 ITFVAMLS 303



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 88/213 (41%), Gaps = 43/213 (20%)

Query: 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208
           +T+  V+ +C        GL V   +  +GF  + ++ N+LI++YA   +L  A+ +F  
Sbjct: 1   MTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSL 60

Query: 209 MPRKTVVSWTA-------------------------------IIGGYGIHGHGEVAVQLF 237
              + VVSW A                               II GY I G  + A +LF
Sbjct: 61  CSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVISWNTIINGYAIVGKIDEAKRLF 120

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
           DEM +  +     ++ S+LS     G  ++    F  M  +  +      +  M+    +
Sbjct: 121 DEMPERNL----VSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVS-----WNSMLACYAQ 171

Query: 298 AGQLNEALELIESML---VEPDGAVWGALLGAC 327
            G+ NEAL L + M    V+P  A   +LL AC
Sbjct: 172 CGKPNEALALFDQMRAVGVKPTEATVVSLLSAC 204


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/510 (38%), Positives = 289/510 (56%), Gaps = 9/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N +ISGY      ++A+ LF +M     + N VT + LL  C +   L  G   H  
Sbjct: 230 IAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRK 289

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGS-VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             + G + D  +GN L+ MY KC S ++  R++F+++  + +ITWN +I  Y Q G A  
Sbjct: 290 VKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKD 349

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L+++++M+   V P+ +T   VLS+CA LGA   G  V   I +    ++  L N+L+N
Sbjct: 350 ALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMN 409

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY RCG+L     +F  +  K++VSW+ +I  Y  HGH    ++ F E+L+ G+  D   
Sbjct: 410 MYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVT 469

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            VS LSACSH G+  +G++ F  M   +GL P   H+ CMVDLL RAG+L  A  LI  M
Sbjct: 470 MVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDM 529

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV-LLSNIYSEARNLDGI 370
              PD   W +LL  CK+H + + A     K+ +LE  +    V LLSN+Y+EA   D +
Sbjct: 530 PFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDV 589

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQ----TVEIYRMLDKLENLVQE 426
            + R     R  +K+PG SY+E+   VH F+ GD++H +      EI R+  ++++    
Sbjct: 590 RKTR---NRRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYV 646

Query: 427 HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
            D          EE       HSEKLAIA+G+I+T PGT + ++KNLR C DCH   K +
Sbjct: 647 PDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFI 706

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           S+IV R+ +VRD+TRFHHF++G CSCKDYW
Sbjct: 707 SRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 149/254 (58%), Gaps = 4/254 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V +  +++ +  N    EA+  + +M  +G+  +    +  + +C     L  G   H 
Sbjct: 23  SVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGVCSSSKDLKQGQLLHA 82

Query: 72  ICVKFGL-DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
           + ++  L + D  +G  L+TMY +C  ++  RK FD++ +K L+TWNA+I+GY++NG   
Sbjct: 83  MILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHR 142

Query: 131 HVLELYREMKSL---GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
             L++Y++M S    G+ PDA+TF   L +C+ +G  S G E+E +  A+G+ S+  + N
Sbjct: 143 GALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVASGYASDSIVQN 202

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           ALINMY++CG+L+ AR +FD +  + V++W  +I GY   G    A++LF  M  +  +P
Sbjct: 203 ALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKP 262

Query: 248 DGTAFVSVLSACSH 261
           +   F+ +L+AC++
Sbjct: 263 NVVTFIGLLTACTN 276



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 90/272 (33%), Positives = 151/272 (55%), Gaps = 6/272 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM---REQGVEINSVTMLCLLPIC 57
            FDE  K T +T  +NALI+GY  N     A+ ++  M     +G++ +++T    L  C
Sbjct: 116 TFDEMGKKTLVT--WNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYAC 173

Query: 58  VDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWN 117
              G +  G       V  G   D  V N L+ MY KCGS++  RK+FD++  + +I WN
Sbjct: 174 SVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWN 233

Query: 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
            MISGYA+ G AT  LEL++ M      P+ VTF+G+L++C +L     G  + ++++ +
Sbjct: 234 TMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEH 293

Query: 178 GFGSNPFLNNALINMYARC-GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
           G+ S+  + N L+NMY +C  +L++AR +F+ +  + V++W  +I  Y  +G  + A+ +
Sbjct: 294 GYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDI 353

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
           F +M    + P+     +VLSAC+  G   +G
Sbjct: 354 FKQMQLENVAPNEITLSNVLSACAVLGAKRQG 385



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/190 (35%), Positives = 97/190 (51%), Gaps = 16/190 (8%)

Query: 91  MYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVT 150
           MY KCGSV     +F  +     ++W  +++ +A+NG     L  YR M   G+ PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 151 FV---GVLSSCAHLGA----HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
           FV   GV SS   L      H++ LE +          +  L  ALI MYARC +L+ AR
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQL------LEFDIILGTALITMYARCRDLELAR 114

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK---SGIRPDGTAFVSVLSACS 260
             FD M +KT+V+W A+I GY  +G    A++++ +M+     G++PD   F S L ACS
Sbjct: 115 KTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACS 174

Query: 261 HAGLTDKGLE 270
             G   +G E
Sbjct: 175 VVGDISQGRE 184



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 117/236 (49%), Gaps = 2/236 (0%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           T   + +N LI  YV      +A+ +F +M+ + V  N +T+  +L  C   G    G  
Sbjct: 328 TRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKA 387

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            H +        D  + N LM MY +CGS+D    +F  + +K L++W+ +I+ YAQ+G 
Sbjct: 388 VHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGH 447

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLE-VEQQIQANGFGSNPFLNN 187
           +   LE + E+   G+  D VT V  LS+C+H G    G++     +  +G   +     
Sbjct: 448 SRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFL 507

Query: 188 ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
            ++++ +R G L+ A  +   MP     V+WT+++ G  +H   + A ++ D++ +
Sbjct: 508 CMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFE 563


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/540 (35%), Positives = 295/540 (54%), Gaps = 36/540 (6%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T+ +  +I+GY  N    EA+ L  ++   G+  +  ++  +   C +   L  G   H 
Sbjct: 384 TISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHS 443

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + VK G   +    N L+TMY KC +++Y R++F ++  K +++WN+ ++   QN L   
Sbjct: 444 LAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDE 503

Query: 132 VLELYREM----------------------KSLGV---------CPDAVTFVGVLSSCAH 160
               +  M                      +++G           P++     +L  C  
Sbjct: 504 ARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGS 563

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           LGA  +G ++       G  S   + NALI+MY +CG    +R IFD M  + + +W  I
Sbjct: 564 LGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLMEERDIFTWNTI 622

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           I GY  HG G  A++++  M  +G+ P+   FV +L+ACSHAGL D+G ++F  M   YG
Sbjct: 623 ITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYG 682

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           L P PEHY CMVDLLGR G +  A + I  M +EPD  +W ALLGACKIHKN E+ + A 
Sbjct: 683 LTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAA 742

Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400
            K+ ++EP N G YV+LSNIYS       +  VR +M+++ + K+PG S+ ++K ++H F
Sbjct: 743 EKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSF 802

Query: 401 MVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAF 456
           + GD+ H Q  EI   L++L  L++       ++      + E+  +    HSEKLA+A+
Sbjct: 803 VTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAY 862

Query: 457 GIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            ++ T  G  I ++KNLRICGDCH FIK VS +  RQ  +RD  RFHHF++G CSC+D+W
Sbjct: 863 CLLATPKGMPIQILKNLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 111/216 (51%), Gaps = 8/216 (3%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+T Y++ G V+  ++LFD++P +  I+W  MI+GYAQNG +   L L +E+   G+ 
Sbjct: 357 NALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGML 416

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P   +   +  +C+++ A   G +V       G   N F  NALI MY +C N++ AR +
Sbjct: 417 PSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQV 476

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           F  M  K +VSW + +     +   + A   FD ML      D  ++ +++SA +HA  +
Sbjct: 477 FSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSR----DDVSWTTIISAYAHAEQS 532

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301
           ++ +  F  M  ++ L   P     +  LLG  G L
Sbjct: 533 NEAMGAFKTMFCEHELPNSP----ILTILLGVCGSL 564



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 118/266 (44%), Gaps = 44/266 (16%)

Query: 94  KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVG 153
           + G V   R++FD +P + +I WN+MIS Y  NG+     +LY  +    +   A+    
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAI---- 101

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
           +LS    LG     LE  +++       N    NA+I+ Y + G++  AR +FD MP + 
Sbjct: 102 LLSGYGRLGR---VLEA-RRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRD 157

Query: 214 V-------------------------------VSWTAIIGGYG-IHGHGEVAVQLFDEML 241
           V                               VSWT +I GYG I  HG+ A  +F +M 
Sbjct: 158 VSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGK-AWDIFCKMH 216

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR-AGQ 300
           + G+ PD + F S LSA    G  D  LE    +  K G +      T ++++  R    
Sbjct: 217 REGLLPDQSNFASALSAVKGLGNLDV-LESLRVLALKTGFERDVVIGTAILNVYSRDTSV 275

Query: 301 LNEALELIESMLVEPDGAVWGALLGA 326
           L+ A++  ESM +E +   W  ++ A
Sbjct: 276 LDTAIKFFESM-IERNEYTWSTMIAA 300



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 124/312 (39%), Gaps = 51/312 (16%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD  ++    TV +NA+IS YV N  ++ A  LF  M  +                   
Sbjct: 118 VFDGMLERN--TVAWNAMISCYVQNGDITMARRLFDAMPSR------------------- 156

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
                               D S  N ++T Y     +   R LF+++PE+ L++W  MI
Sbjct: 157 --------------------DVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMI 196

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGY +        +++ +M   G+ PD   F   LS+   LG   V   +       GF 
Sbjct: 197 SGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFE 256

Query: 181 SNPFLNNALINMYAR-CGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            +  +  A++N+Y+R    L  A   F+ M  +   +W+ +I      G  + A+ +++ 
Sbjct: 257 RDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYER 316

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
                I    TA ++ L+ C   G  D     F  +      +P    +  ++    + G
Sbjct: 317 DPVKSIACR-TALITGLAQC---GRIDDARILFEQIP-----EPIVVSWNALITGYMQNG 367

Query: 300 QLNEALELIESM 311
            +NEA EL + M
Sbjct: 368 MVNEAKELFDKM 379



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 11/142 (7%)

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           +A I    R G + +AR +FD MPR+ +++W ++I  Y  +G  + A  L+D +    +R
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR 97

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
                   +LS     G   +    F GM     L+     +  M+    + G +  A  
Sbjct: 98  TGAI----LLSGYGRLGRVLEARRVFDGM-----LERNTVAWNAMISCYVQNGDITMARR 148

Query: 307 LIESMLVEPDGAVWGALL-GAC 327
           L ++M    D + W ++L G C
Sbjct: 149 LFDAM-PSRDVSSWNSMLTGYC 169


>gi|326528959|dbj|BAJ97501.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 514

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/513 (38%), Positives = 292/513 (56%), Gaps = 14/513 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM-CCHC 71
           V YNA IS      L   A++L  +MR +G   +  T   L P       L L     H 
Sbjct: 7   VAYNAAISRCSRAGLHQRALALLHEMRARGHRADEYT---LPPALNSAALLRLPADALHS 63

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + ++ GL     V N L+  Y K       R +FD++P + +++W ++++G A++     
Sbjct: 64  LLLRAGLAAHLHVANALVDAYAKLSRHGAARAVFDEMPRRDVVSWTSLLTGLARSRSHDS 123

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN--NAL 189
            L++YR+M + GV PD       LSSCA  GA ++ L       A     +PFL+  N+L
Sbjct: 124 ALQVYRDMVAAGVGPDEFAVAAALSSCA--GATALELGRSVHAAAVRLALDPFLSVGNSL 181

Query: 190 INMYARCGNLKKARAIFDG--MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           ++MYA+ G+L +A+ +FD   + R   ++WTA+I GY  +G G  +++++ +M++SG RP
Sbjct: 182 VSMYAKTGSLGEAKKVFDATRVDRCDPITWTALIVGYAQNGRGRESLEIYADMVRSGCRP 241

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           D   F+ +L ACSHAGL D G  +F  M+ ++G+ PG +HY CMVDLLGRAG+L+EA++L
Sbjct: 242 DYVTFIGLLFACSHAGLVDAGRAHFRSMQAEHGIAPGADHYACMVDLLGRAGRLDEAMDL 301

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNL 367
           +       D  VW ALL AC+ H+N ELAE A   V +L+P +   YV+LSN+YS A   
Sbjct: 302 LNRSTTRLDATVWKALLAACRTHRNAELAEHAAAMVWRLDPTDAVPYVMLSNLYSRAGRW 361

Query: 368 DGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH 427
             + RVR  M+ R + K+PG S+V   G  HLF V DR H +  E+YR ++++   ++  
Sbjct: 362 GDVARVRTSMKARGITKEPGCSWVAANGVTHLFYVEDRRHPRAAEVYRKVEEMTERIRGQ 421

Query: 428 ----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFI 483
               D       +  E        HSE+LA+AFG++    G  I V KNLR+CGDCH  I
Sbjct: 422 GYVADTAWALQDEGPEGREKGLAHHSERLAVAFGLLAVPAGAPIRVFKNLRVCGDCHAAI 481

Query: 484 KLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K+V++   R+ ++RD+  FHH K G CSC DYW
Sbjct: 482 KMVAQAYGREIVLRDSNCFHHMKDGACSCGDYW 514



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 96/215 (44%), Gaps = 35/215 (16%)

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN-----PFLN------------ 186
           V P  V +   +S C+  G H   L +  +++A G  ++     P LN            
Sbjct: 2   VVPPGVAYNAAISRCSRAGLHQRALALLHEMRARGHRADEYTLPPALNSAALLRLPADAL 61

Query: 187 ----------------NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHG 230
                           NAL++ YA+      ARA+FD MPR+ VVSWT+++ G       
Sbjct: 62  HSLLLRAGLAAHLHVANALVDAYAKLSRHGAARAVFDEMPRRDVVSWTSLLTGLARSRSH 121

Query: 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC 290
           + A+Q++ +M+ +G+ PD  A  + LS+C+ A   + G    +    +  L P       
Sbjct: 122 DSALQVYRDMVAAGVGPDEFAVAAALSSCAGATALELG-RSVHAAAVRLALDPFLSVGNS 180

Query: 291 MVDLLGRAGQLNEALELIESMLVEP-DGAVWGALL 324
           +V +  + G L EA ++ ++  V+  D   W AL+
Sbjct: 181 LVSMYAKTGSLGEAKKVFDATRVDRCDPITWTALI 215


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/544 (38%), Positives = 305/544 (56%), Gaps = 42/544 (7%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N ++  Y+ ++   +A+ L+  M +  V  ++ T   ++  C      + G   H   +
Sbjct: 97  WNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVL 156

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP------------------------- 109
           K G D D  V N L+ MY  CG++   RKLFD+ P                         
Sbjct: 157 KVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVME 216

Query: 110 ---------EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160
                    EK +++W+A+ISGY QNG+    L ++ EM + G+  D V  V VLS+CAH
Sbjct: 217 AWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAH 276

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA----RCGNLKKARAIFDGMPRKTVVS 216
           L     G  +   +   G  S   L NALI+MY+    +CG ++ A  +F+GM  K V S
Sbjct: 277 LSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSS 336

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
           W A+I G  ++G  E ++ +F EM  +G+ P+   F+ VL AC H GL D+G  +F  M 
Sbjct: 337 WNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMI 396

Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELA 336
            K+G++P  +HY CMVDLLGRAG LNEA +LIESM + PD A WGALLGACK H + E+ 
Sbjct: 397 EKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMG 456

Query: 337 ELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGR 396
           E    K+I+L+P + G++VLLSNI++   + + ++ VR MM+++ + K PG S +E  G 
Sbjct: 457 ERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGV 516

Query: 397 VHLFMVGDRNHHQTVEIYRMLDKLENLVQEH----DGTKRSDQKNSEEHLNDTEVHSEKL 452
           VH F+ GD+ H    ++  ML+++   ++      D  + S   + EE       HSEKL
Sbjct: 517 VHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSEKL 576

Query: 453 AIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSC 512
           AIAFG++  SP T I +MKNLRIC DCH   KL+SK   R+ +VRD  RFH+FK G CSC
Sbjct: 577 AIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGACSC 636

Query: 513 KDYW 516
            DYW
Sbjct: 637 MDYW 640



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 138/251 (54%), Gaps = 8/251 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++ALISGY  N +  EA+ +F +M   G+ ++ V ++ +L  C     +  G   H +
Sbjct: 230 VSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGL 289

Query: 73  CVKFGLDLDFSVGNCLM----TMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            ++ G++   ++ N L+     MY+KCG V+   ++F+ + EKG+ +WNA+I G A NGL
Sbjct: 290 VIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGL 349

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVG-LEVEQQIQANGFGSNPFLNN 187
               L+++ EMK+ GV P+ +TF+GVL +C H+G    G       I+ +G   N     
Sbjct: 350 VERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYG 409

Query: 188 ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
            ++++  R G L +A  + + MP    V +W A++G    HG  E+  ++  ++++  ++
Sbjct: 410 CMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIE--LQ 467

Query: 247 PDGTAFVSVLS 257
           PD   F  +LS
Sbjct: 468 PDHDGFHVLLS 478



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 126/275 (45%), Gaps = 40/275 (14%)

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
           +DY  ++FD++       WN M+  Y Q+  A   L LY+ M    V PD  T+  V+ +
Sbjct: 79  LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA 138

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP------- 210
           CA       G E+   +   GF S+ ++ N LINMYA CGN++ AR +FD  P       
Sbjct: 139 CAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSW 198

Query: 211 ---------------------------RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
                                       K +VSW+A+I GY  +G  E A+ +F EM  +
Sbjct: 199 NSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNAN 258

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV----DLLGRAG 299
           G+R D    VSVLSAC+H  +   G +  +G+  + G++        ++    D+  + G
Sbjct: 259 GMRLDEVVVVSVLSACAHLSIVKTG-KMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCG 317

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVE 334
            +  ALE+   M  E   + W AL+    ++  VE
Sbjct: 318 CVENALEVFNGM-EEKGVSSWNALIIGLAVNGLVE 351


>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Glycine max]
          Length = 661

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/507 (39%), Positives = 297/507 (58%), Gaps = 14/507 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N +  GY  +   S A+  + +M    +E ++ T   LL        +  G   H + +
Sbjct: 98  WNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYPFLLKAISKSLNVREGEAIHSVTI 157

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           + G +    V N L+ +Y  CG  +    +F+ + ++ L+   ++I+G+A NG  +  L 
Sbjct: 158 RNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDLVAXISVINGFALNGRPSEALT 217

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+REM + GV PD  T V +LS+ A LGA  +G  V   +   G   N  + N+L+++YA
Sbjct: 218 LFREMSAEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLRENSHVTNSLLDLYA 277

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +C       AI++    +  VSWT++I G  ++G GE A++LF EM   G+ P    FV 
Sbjct: 278 KCD------AIWEX--ERNAVSWTSLIVGLAVNGFGEEALELFREMEGQGLVPSEITFVG 329

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VL ACSH G+ D+G +YF  MK ++G+ P  EHY CMVDLL RAG + +A E I++M V+
Sbjct: 330 VLYACSHCGMLDEGFDYFRRMKEEFGIMPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQ 389

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
           P+   W  LLGAC IH ++ L E A   ++KLEP ++G YVLLSN+Y+       +  +R
Sbjct: 390 PNAVTWRTLLGACTIHGHLGLGETARSHLLKLEPKHSGDYVLLSNLYTSECRWADVQLIR 449

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ-----EHDG 429
             M +  +KK  GYS VEL  RV+ F +G+R+H Q+ ++Y +L+K+  L++      H  
Sbjct: 450 RSMLKDGVKKTSGYSLVELGNRVYEFTMGNRSHPQSQDVYALLEKITELLKLEGYVPHTA 509

Query: 430 TKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKI 489
              +D +  EE       HSEK AIAF  +NT+PGT I VMKNLR+C DCH+ IKL++K+
Sbjct: 510 NVLADIE-EEEKEQALSYHSEKXAIAFMRLNTAPGTTIRVMKNLRVCADCHMAIKLMAKV 568

Query: 490 VDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DR+ ++RD  RFHHF+ G CSCKDYW
Sbjct: 569 YDREIVIRDRGRFHHFRGGSCSCKDYW 595



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 88/171 (51%)

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
           + Y   +F  +    + TWN M  GYA++   +  L  YR+M    + PD  T+  +L +
Sbjct: 80  LSYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYPFLLKA 139

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
            +       G  +      NGF S  F+ N+L+++YA CG+ + A  +F+ M  + +V+ 
Sbjct: 140 ISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDLVAX 199

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
            ++I G+ ++G    A+ LF EM   G+ PDG   VS+LSA +  G  + G
Sbjct: 200 ISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELG 250


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/526 (38%), Positives = 302/526 (57%), Gaps = 12/526 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE+ + T     +NA+     + S   + + L+G+M   G+  N  T   +L  CV  
Sbjct: 131 VFDETREKT--IFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVS 188

Query: 61  GY----LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
                 L  G   H   ++ G +    V   L+ +Y + G V Y   +F  +P+K +++W
Sbjct: 189 ELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSW 248

Query: 117 NAMISGYAQNGLATHVLELYREM--KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
           +AMI+ YA+N +    LEL++ M  ++    P+ +T V VL +CA L A   G  V   +
Sbjct: 249 SAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYV 308

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
              G  S   + N LI MY RCG +   + +FD M ++ V+SW ++I  YG+HG G+ A+
Sbjct: 309 LRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAI 368

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
           Q+F+ M+  G+ P    F++VL ACSHAGL ++    F  M NKY + P  EHY CMVD+
Sbjct: 369 QIFENMINRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDI 428

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           LGRA +L+EA+ELI++M  +P   VWG+LLG+C+IH NVELAE A   + +LEP N G Y
Sbjct: 429 LGRANRLDEAIELIQNMDFKPGPTVWGSLLGSCRIHCNVELAERASAMLFELEPKNAGNY 488

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
           VLLS+IY+++R  + + RVR  +  R L+K P  S++E+K +++  +  +  + Q  E+ 
Sbjct: 489 VLLSHIYAKSRMWNDVRRVRKQLESRGLQKIPSCSWIEVKRKIYSLVSIEEYNPQIEELC 548

Query: 415 RMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVM 470
             L  L   ++      +++      + EE       HS KLA+AFG+INTS G  I + 
Sbjct: 549 AFLITLLTEIKNQGYVPQTNVVTYDLDEEEKERIVLGHSGKLAVAFGLINTSKGEIIRIS 608

Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            NLR+C DCH F+K VSK  +R+ ++RD  RFH FK G CSC DYW
Sbjct: 609 NNLRLCEDCHAFMKFVSKFTNREILLRDVNRFHCFKDGVCSCGDYW 654



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 135/289 (46%), Gaps = 10/289 (3%)

Query: 49  TMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV 108
           T   L+  C++   L  G+  H   V  GLD D  +   L+ MY   GSVD+  K+FD+ 
Sbjct: 76  TFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKVFDET 135

Query: 109 PEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA----HLGAH 164
            EK +  WNA+    A       +L LY +M  +G+  +  T+  VL +C      +   
Sbjct: 136 REKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPL 195

Query: 165 SVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGY 224
             G E+   I  +G+  +  +   L+++YAR G +  A ++F  MP K +VSW+A+I  Y
Sbjct: 196 RKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACY 255

Query: 225 GIHGHGEVAVQLFDEMLKSGIR--PDGTAFVSVLSAC-SHAGLTDKGLEYFYGMKNKYGL 281
             +     A++LF  M+       P+    VSVL AC S A L    L + Y ++   GL
Sbjct: 256 AKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRR--GL 313

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
                    ++ + GR G+++    + + M  + D   W +L+    +H
Sbjct: 314 DSTLPVLNTLITMYGRCGEISTGQRVFDYM-KKRDVISWNSLISIYGMH 361



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 99/212 (46%), Gaps = 11/212 (5%)

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P   TF  +++SC    + S G++V  ++  +G   +P+L   LINMY   G++  A  +
Sbjct: 72  PTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKV 131

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           FD    KT+  W AI     +   GE  + L+ +M   GI  +   +  VL AC  + L+
Sbjct: 132 FDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELS 191

Query: 266 ----DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAV-- 319
                KG E  +    ++G +      T ++D+  R G ++ A  +  +M   PD  +  
Sbjct: 192 ICPLRKGKE-IHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAM---PDKNIVS 247

Query: 320 WGALLGACKIHKNVELAELAFGKVIKLEPMNT 351
           W A++ AC     + +  L   +++ LE  +T
Sbjct: 248 WSAMI-ACYAKNEMPMKALELFQIMMLEACDT 278


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/528 (38%), Positives = 300/528 (56%), Gaps = 14/528 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVD 59
           VFD    S      +NA+I GY    +  EA+ LF +M  E G      TM  +LP C  
Sbjct: 177 VFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACAR 236

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
                     H   VK G+  +  V N LM MY + G  D  R++F  V    +++WN +
Sbjct: 237 SEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTL 296

Query: 120 ISGYAQNGLATHVLELYREMKSL---GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
           I+G    G      +L REM+ L   GV P+A+T + +L  CA L A + G E+      
Sbjct: 297 ITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVR 356

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
           +   ++  + +AL++MYA+CG L  +RA+FD +PR+  ++W  +I  YG+HG G  A  L
Sbjct: 357 HALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVL 416

Query: 237 FDEMLKSG-IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295
           FD M  SG  RP+   F++ L+ACSH+G+ D+GL+ F+ M+  +G++P P+   C+VD+L
Sbjct: 417 FDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDIL 476

Query: 296 GRAGQLNEALELIESMLV-EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           GRAG+L+EA  ++ SM   E   + W  +LGAC++H+NV L E+A  ++++LEP    +Y
Sbjct: 477 GRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHY 536

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
           VLL NIYS A        VR  MR R + K+PG S++E+ G +H FM G+  H  + E++
Sbjct: 537 VLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVH 596

Query: 415 RMLDKLENLVQEHDGTKRSDQKNSEEHLNDTE------VHSEKLAIAFGIINTSPGTEIV 468
             ++ L   +     T   D       ++D +       HSEKLAIAFG++  +PG  I 
Sbjct: 597 AHMEALWGEMVARGYTP--DTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIR 654

Query: 469 VMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           V KNLR+C DCH   K +SK+V R+ ++RD  RFHHF++G CSC DYW
Sbjct: 655 VAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 702



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 147/325 (45%), Gaps = 9/325 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N ++S  V + +  EAV     M   GV  + VT    LP C     L +G   H  
Sbjct: 85  VTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAY 144

Query: 73  CVKFG-LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG--LITWNAMISGYAQNGLA 129
            +K   L  +  V + L+ MY     V   R++FD VP+ G  L  WNAMI GYAQ G+ 
Sbjct: 145 VIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMD 204

Query: 130 THVLELYREMKS-LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
              L L+  M++  G  P   T   VL +CA   A +    V   +   G   N F+ NA
Sbjct: 205 EEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNA 264

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK---SGI 245
           L++MYAR G    AR IF  +    VVSW  +I G  + GH   A QL  EM +    G+
Sbjct: 265 LMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGV 324

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
            P+    +++L  C+      +G E  +G   ++ L       + +VD+  + G L  + 
Sbjct: 325 VPNAITLMTLLPGCAILAAPARGKE-IHGYAVRHALDTDVAVGSALVDMYAKCGCLALSR 383

Query: 306 ELIESMLVEPDGAVWGALLGACKIH 330
            + +  L   +   W  L+ A  +H
Sbjct: 384 AVFDR-LPRRNTITWNVLIMAYGMH 407



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/278 (32%), Positives = 140/278 (50%), Gaps = 12/278 (4%)

Query: 65  LGMCCHCICVKFGL---DLDFSVGNCLMTMYVKCGSVDYGRKLF-DQVPEKG-LITWNAM 119
           LG   H   +K GL      F+  N L++MY + G V   ++LF    P +G ++TWN M
Sbjct: 32  LGREAHAFALKNGLLHGHQRFAF-NALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTM 90

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQ-IQANG 178
           +S   Q+G+    ++   +M +LGV PD VTF   L +C+ L    VG E+    I+ + 
Sbjct: 91  VSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDE 150

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIHGHGEVAVQL 236
             +N F+ +AL++MYA    + KAR +FD +P   K +  W A+I GY   G  E A++L
Sbjct: 151 LAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRL 210

Query: 237 FDEM-LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295
           F  M  ++G  P  T   SVL AC+ +     G E  +G   K G+         ++D+ 
Sbjct: 211 FARMEAEAGFVPCETTMASVLPACARSE-AFAGKEAVHGYVVKRGMAGNRFVQNALMDMY 269

Query: 296 GRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNV 333
            R G+ + A  +  +M+  PD   W  L+  C +  +V
Sbjct: 270 ARLGKTDVARRIF-AMVDLPDVVSWNTLITGCVVQGHV 306


>gi|218192417|gb|EEC74844.1| hypothetical protein OsI_10704 [Oryza sativa Indica Group]
          Length = 614

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/506 (40%), Positives = 292/506 (57%), Gaps = 52/506 (10%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +NA+ISG+    L   A+ +F ++   Q  + ++ TM  +LP                
Sbjct: 24  VSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILP---------------- 67

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                      S+G        +   +   + +FD++   GLI+WNAM++ Y  N +   
Sbjct: 68  -----------SMGK------ARVEDIALLKGVFDEMRFTGLISWNAMLAVYTNNEMHVE 110

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            +EL+  M+  G+ PDAVT   VL SC  + A S+G  + + I+     S+  L NAL++
Sbjct: 111 AVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMD 170

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA CG LK+AR +FD M  + VVSWT+II  YG HGHG  A+ LF++M   G+ PD  A
Sbjct: 171 MYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIA 230

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           FV++L+ACSHAGL D G  YFY M +++ + P  EHY CMVDLLGRAG + EA + I  M
Sbjct: 231 FVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVM 290

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            ++P+  VWGALLGAC+IH N+++  LA   +++L P  TGYYVLLSNIY+ A     + 
Sbjct: 291 PIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVS 350

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----- 426
            VR +M  + +KK PG S  EL   VH F +GD +H Q+  IY+ L +L   ++E     
Sbjct: 351 MVRSVMESKGIKKLPGVSNAELGDSVHTFHIGDTSHPQSKMIYKKLSELLRRIREMGYNP 410

Query: 427 ------HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCH 480
                 HD     ++++ E HL+   VHSEKLAIAF +INT+PGT I +  NLR C DCH
Sbjct: 411 EVEATLHD----VEEEDKEGHLS---VHSEKLAIAFLLINTNPGTPIRITMNLRTCSDCH 463

Query: 481 LFIKLVSKIVDRQFIVRDATRFHHFK 506
              KL+S I  R+ I++D  R H+ K
Sbjct: 464 HAAKLISTIAGREIILKDVNRIHYMK 489



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 139/260 (53%), Gaps = 8/260 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE ++ T L + +NA+++ Y  N +  EAV LF +M++ G+E ++VT+  +LP C + 
Sbjct: 83  VFDE-MRFTGL-ISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEV 140

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L LG   H +  +  +     + N LM MY  CG +   R +FD +  + +++W ++I
Sbjct: 141 SALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSII 200

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           S Y ++G     ++L+ +M   G+ PD++ FV +L++C+H G   +G      + +  F 
Sbjct: 201 SAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSE-FH 259

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLF 237
             P L +   ++++  R G +++A      MP +     W A++G   IH + ++ +   
Sbjct: 260 IAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAA 319

Query: 238 DEMLKSGIRPDGTAFVSVLS 257
           D +L+  + P  T +  +LS
Sbjct: 320 DSLLR--LAPKQTGYYVLLS 337



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 109/271 (40%), Gaps = 67/271 (24%)

Query: 91  MYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC-PDAV 149
           MY +CG  D   ++F+++  + +++WNAMISG+A  GL    ++++RE+ +L    PDA 
Sbjct: 1   MYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAG 60

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
           T   +L S                                    AR  ++   + +FD M
Sbjct: 61  TMASILPSMGK---------------------------------ARVEDIALLKGVFDEM 87

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
               ++SW A++  Y  +     AV+LF  M K GI PD     +VL +C        G 
Sbjct: 88  RFTGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGK 147

Query: 270 EYFYGMKNK---------------YG----LQPGPE-----------HYTCMVDLLGRAG 299
                +K +               Y     L+   +            +T ++   GR G
Sbjct: 148 RIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHG 207

Query: 300 QLNEALELIESML---VEPDGAVWGALLGAC 327
              EA++L E M    +EPD   + A+L AC
Sbjct: 208 HGREAIDLFEKMCGQGLEPDSIAFVAILAAC 238



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 12/157 (7%)

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK-SGIRPDGT 250
           MYARCG    A  +F+ M  + VVSW A+I G+   G    A+ +F E++     +PD  
Sbjct: 1   MYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAG 60

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
              S+L +   A + D  L    G+ ++     G   +  M+ +        EA+EL   
Sbjct: 61  TMASILPSMGKARVEDIAL--LKGVFDEMRFT-GLISWNAMLAVYTNNEMHVEAVELFMR 117

Query: 311 ML---VEPDGAVWGALLGACKIHKNVELAELAFGKVI 344
           M    +EPD      +L +C      E++ L+ GK I
Sbjct: 118 MQKDGIEPDAVTLATVLPSCG-----EVSALSLGKRI 149


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/510 (38%), Positives = 289/510 (56%), Gaps = 9/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N +ISGY      ++A+ LF +M     + N VT + LL  C +   L  G   H  
Sbjct: 230 IAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRK 289

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGS-VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             + G + D  +GN L+ MY KC S ++  R++F+++  + +ITWN +I  Y Q G A  
Sbjct: 290 VREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKD 349

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L+++++M+   V P+ +T   VLS+CA LGA   G  V   I +    ++  L N+L+N
Sbjct: 350 ALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMN 409

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY RCG+L     +F  +  K++VSW+ +I  Y  HGH    ++ F E+L+ G+  D   
Sbjct: 410 MYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVT 469

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            VS LSACSH G+  +G++ F  M   +GL P   H+ CMVDLL RAG+L  A  LI  M
Sbjct: 470 MVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDM 529

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV-LLSNIYSEARNLDGI 370
              PD   W +LL  CK+H + + A     K+ +LE  +    V LLSN+Y+EA   D +
Sbjct: 530 PFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDV 589

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQ----TVEIYRMLDKLENLVQE 426
            + R     R  +K+PG SY+E+   VH F+ GD++H +      EI R+  ++++    
Sbjct: 590 RKTR---NRRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYV 646

Query: 427 HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
            D          EE       HSEKLAIA+G+I+T PGT + ++KNLR C DCH   K +
Sbjct: 647 PDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFI 706

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           S+IV R+ +VRD+TRFHHF++G CSCKDYW
Sbjct: 707 SRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 148/254 (58%), Gaps = 4/254 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V +  +++ +  N    EA+  + +M  +G+  +    +  + +C     L  G   H 
Sbjct: 23  SVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGVCSSSKDLKQGQLLHA 82

Query: 72  ICVKFGL-DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
           + ++  L + D  +G  L+TMY +C  ++  RK FD++ +K L+TWNA+I+GY++NG   
Sbjct: 83  MILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHR 142

Query: 131 HVLELYREMKSL---GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
             L++Y++M S    G+ PDA+TF   L +C  +G  S G E+E +  A+G+ S+  + N
Sbjct: 143 GALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASDSIVQN 202

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           ALINMY++CG+L+ AR +FD +  + V++W  +I GY   G    A++LF  M  +  +P
Sbjct: 203 ALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKP 262

Query: 248 DGTAFVSVLSACSH 261
           +   F+ +L+AC++
Sbjct: 263 NVVTFIGLLTACTN 276



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 91/272 (33%), Positives = 151/272 (55%), Gaps = 6/272 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM---REQGVEINSVTMLCLLPIC 57
            FDE  K T +T  +NALI+GY  N     A+ ++  M     +G++ +++T    L  C
Sbjct: 116 TFDEMGKKTLVT--WNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYAC 173

Query: 58  VDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWN 117
              G +  G       V  G   D  V N L+ MY KCGS++  RK+FD++  + +I WN
Sbjct: 174 TVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWN 233

Query: 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
            MISGYA+ G AT  LEL++ M      P+ VTF+G+L++C +L     G  + ++++ +
Sbjct: 234 TMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVRED 293

Query: 178 GFGSNPFLNNALINMYARC-GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
           G+ S+  + N L+NMY +C  +L++AR +F+ M  + V++W  +I  Y  +G  + A+ +
Sbjct: 294 GYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDI 353

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
           F +M    + P+     +VLSAC+  G   +G
Sbjct: 354 FKQMQLENVAPNEITLSNVLSACAVLGAKRQG 385



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 136/334 (40%), Gaps = 55/334 (16%)

Query: 91  MYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVT 150
           MY KCGSV     +F  +     ++W  +++ +A+NG     L  YR M   G+ PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQI-QANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
           FV  +  C+       G  +   I +      +  L  ALI MYARC +L+ AR  FD M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK---SGIRPDGTAFVSVLSACSHAGLTD 266
            +KT+V+W A+I GY  +G    A++++ +M+     G++PD   F S L AC+  G   
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 267 KGLEY------------------FYGMKNKYGLQPGPEH------------YTCMVDLLG 296
           +G E                      M +K G                   +  M+    
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 297 RAGQLNEALELIESM---LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGY 353
           + G   +ALEL + M     +P+   +  LL AC       L +L  G+ I  +    GY
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTAC-----TNLEDLEQGRAIHRKVREDGY 295

Query: 354 -------------YVLLSNIYSEARNLDGIMRVR 374
                        Y   S+   EAR +   MR R
Sbjct: 296 ESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTR 329



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 117/236 (49%), Gaps = 2/236 (0%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           T   + +N LI  YV      +A+ +F +M+ + V  N +T+  +L  C   G    G  
Sbjct: 328 TRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKA 387

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            H +        D  + N LM MY +CGS+D    +F  + +K L++W+ +I+ YAQ+G 
Sbjct: 388 VHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGH 447

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEV-EQQIQANGFGSNPFLNN 187
           +   LE + E+   G+  D VT V  LS+C+H G    G++     +  +G   +     
Sbjct: 448 SRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFL 507

Query: 188 ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
            ++++ +R G L+ A  +   MP     V+WT+++ G  +H   + A ++ D++ +
Sbjct: 508 CMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFE 563


>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g35130, chloroplastic; Flags: Precursor
 gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
 gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
 gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 804

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/510 (37%), Positives = 294/510 (57%), Gaps = 10/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +N +I  Y  N  V++A   F KM EQ G++ + +T + LLP       +  G   H 
Sbjct: 299 VAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASA----ILEGRTIHG 354

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             ++ G      +   L+ MY +CG +     +FD++ EK +I+WN++I+ Y QNG    
Sbjct: 355 YAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYS 414

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            LEL++E+    + PD+ T   +L + A   + S G E+   I  + + SN  + N+L++
Sbjct: 415 ALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVH 474

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA CG+L+ AR  F+ +  K VVSW +II  Y +HG G ++V LF EM+ S + P+ + 
Sbjct: 475 MYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKST 534

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F S+L+ACS +G+ D+G EYF  MK +YG+ PG EHY CM+DL+GR G  + A   +E M
Sbjct: 535 FASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEM 594

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
              P   +WG+LL A + HK++ +AE A  ++ K+E  NTG YVLL N+Y+EA   + + 
Sbjct: 595 PFVPTARIWGSLLNASRNHKDITIAEFAAEQIFKMEHDNTGCYVLLLNMYAEAGRWEDVN 654

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
           R++++M  + + +    S VE KG+ H+F  GDR+H  T +IY +LD +  +V E D   
Sbjct: 655 RIKLLMESKGISRTSSRSTVEAKGKSHVFTNGDRSHVATNKIYEVLDVVSRMVGEEDIYV 714

Query: 432 RSDQKNSEEHL-----NDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
               +   E L     N    HS +LA  FG+I+T  G  + V  N RIC  CH F++  
Sbjct: 715 HCVSRLRPETLVKSRSNSPRRHSVRLATCFGLISTETGRRVTVRNNTRICRKCHEFLEKA 774

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           S++  R+ +V D+  FHHF +G CSC +YW
Sbjct: 775 SRLTRREIVVGDSKIFHHFSNGRCSCGNYW 804



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 167/329 (50%), Gaps = 12/329 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  K+      +N +I G+    L  EAV  + +M   GV+ ++ T   ++      
Sbjct: 86  LFDEMNKAD--AFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAGI 143

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H + +K G   D  V N L+++Y+K G      K+F+++PE+ +++WN+MI
Sbjct: 144 SSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMI 203

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVE-QQIQANGF 179
           SGY   G     L L++EM   G  PD  + +  L +C+H+ +  +G E+    +++   
Sbjct: 204 SGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIE 263

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             +  +  ++++MY++ G +  A  IF+GM ++ +V+W  +IG Y  +G    A   F +
Sbjct: 264 TGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQK 323

Query: 240 ML-KSGIRPDGTAFVSVLSACS-HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
           M  ++G++PD    +++L A +   G T  G    Y M+   G  P     T ++D+ G 
Sbjct: 324 MSEQNGLQPDVITSINLLPASAILEGRTIHG----YAMRR--GFLPHMVLETALIDMYGE 377

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGA 326
            GQL  A E+I   + E +   W +++ A
Sbjct: 378 CGQLKSA-EVIFDRMAEKNVISWNSIIAA 405



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 141/273 (51%), Gaps = 9/273 (3%)

Query: 103 KLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162
           +LFD++ +     WN MI G+   GL    ++ Y  M   GV  D  T+  V+ S A + 
Sbjct: 85  QLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAGIS 144

Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIG 222
           +   G ++   +   GF S+ ++ N+LI++Y + G    A  +F+ MP + +VSW ++I 
Sbjct: 145 SLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMIS 204

Query: 223 GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGL 281
           GY   G G  ++ LF EMLK G +PD  + +S L ACSH      G E + + ++++  +
Sbjct: 205 GYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSR--I 262

Query: 282 QPGPEH-YTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           + G     T ++D+  + G+++ A E I + +++ +   W  ++G    +  V  A L F
Sbjct: 263 ETGDVMVMTSILDMYSKYGEVSYA-ERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCF 321

Query: 341 GKVIK---LEP-MNTGYYVLLSNIYSEARNLDG 369
            K+ +   L+P + T   +L ++   E R + G
Sbjct: 322 QKMSEQNGLQPDVITSINLLPASAILEGRTIHG 354


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/526 (39%), Positives = 304/526 (57%), Gaps = 16/526 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +     V + A+IS Y       EA++LF +M     E N  T   +L  C   
Sbjct: 147 MFDEMPQKN--VVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGS 204

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
                G   H I +K   +    VG+ L+ MY K G +     +F  +PE+ ++   A+I
Sbjct: 205 LGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAII 264

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGYAQ GL    L+L+R+++  G+  ++VT+  VL++ + L A + G +V   +  +G  
Sbjct: 265 SGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQY 324

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S   L N+LI+MY++CGN+  AR IFD MP +T +SW A++ GY  HG     ++LF  M
Sbjct: 325 SYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLM 384

Query: 241 LKSG-IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN-KYGLQPGPEHYTCMVDLLGRA 298
            +   ++PD   +++VLS CSH  L D GLE FY M N K G++P   HY C+VDLLGRA
Sbjct: 385 REENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRA 444

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           G++ EA + I+ M   P  A+WG+LLG+C++H +VE+  +   K+++LEP N G YV+LS
Sbjct: 445 GRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILS 504

Query: 359 NIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD 418
           N+Y+ A   + +  +R +M+E+ + K+PG S+VEL   VH F   D  H +  E+ + + 
Sbjct: 505 NLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVAKKVK 564

Query: 419 KLENLVQEHDGTKRS--------DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVM 470
           +L    +E DG            D++  E+ L     HSEKLA+AFG+I T  GT I V+
Sbjct: 565 ELSIKFKE-DGYVPDLSCVLYDVDEEQKEKVLLG---HSEKLALAFGLIATPEGTTIRVI 620

Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KNLRIC DCH F K VS++  R  I+RD  RFH+   G CSC DYW
Sbjct: 621 KNLRICVDCHSFAKFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 666



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 144/282 (51%), Gaps = 21/282 (7%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L+ +Y KC  +   R++FD++P+K +++W AMIS Y+Q G A   L L+ EM      P+
Sbjct: 131 LIVLYNKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPN 190

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQA----NGFGSNPFLNNALINMYARCGNLKKAR 203
             TF  +L+SC      S+G E  +QI +      + S+ F+ ++L++MYA+ G +  A 
Sbjct: 191 HFTFATILTSC----YGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAH 246

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG 263
            +F  +P + VV+ TAII GY   G  E A++LF ++   G+  +   + SVL+A S   
Sbjct: 247 GVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLA 306

Query: 264 LTDKGLEYFYGMKNKYGLQPGPEHY----TCMVDLLGRAGQLNEALELIESMLVEPDGAV 319
             + G +      + + L+ G   Y      ++D+  + G +  A  + +SM  E     
Sbjct: 307 ALNHGKQV-----HSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSM-PERTCIS 360

Query: 320 WGALL-GACKIHKNVELAEL--AFGKVIKLEPMNTGYYVLLS 358
           W A+L G  K     E+ EL     +  K++P +  Y  +LS
Sbjct: 361 WNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLS 402



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 3/129 (2%)

Query: 134 ELYREMKSLGVCPDAVTFVG---VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
           +L   +  + +    V F G   +L+ C    A   G  V   +    +  + +L   LI
Sbjct: 73  QLKEALLQMAILGREVKFEGYDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLI 132

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
            +Y +C  L  AR +FD MP+K VVSWTA+I  Y   G    A+ LF EML+S   P+  
Sbjct: 133 VLYNKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHF 192

Query: 251 AFVSVLSAC 259
            F ++L++C
Sbjct: 193 TFATILTSC 201


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/518 (40%), Positives = 308/518 (59%), Gaps = 18/518 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+I     +    EAV LF +M  +G++++  TM  +L        L  GM  H +
Sbjct: 209 VSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGM 268

Query: 73  CVKFGLDLDFSVGNCLMTMYVKC-GSVDYGRKLFDQVPEKGLITWNAMISGYAQ-NGLAT 130
            +K G   +  VG+ L+ +Y KC G +   RK+F+++    L+ WN MISG++Q   L+ 
Sbjct: 269 MIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSE 328

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN-PF----L 185
             +  +REM+  G  PD  +FV V S+C++L + SVG    +Q+ A    S+ P+    +
Sbjct: 329 DGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVG----KQVHALAIKSDIPYNRVSV 384

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
           NNAL+ MY++CGN+  AR +FD MP   +VS  ++I GY  HG    +++LF+ ML+  I
Sbjct: 385 NNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDI 444

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
            P+   F++VLSAC H G  ++G +YF  MK ++ ++P  EHY+CM+DLLGRAG+L EA 
Sbjct: 445 APNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAE 504

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR 365
            +IE+M   P    W  LLGAC+ H NVELA  A  + ++LEP N   YV+LSN+Y+ A 
Sbjct: 505 RIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLQLEPYNAAPYVMLSNMYASAA 564

Query: 366 NLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY----RMLDKLE 421
             +    V+ +MRER +KK PG S++E+  +VH+F+  D +H    EI+     +L K++
Sbjct: 565 RWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGEILRKMK 624

Query: 422 NLVQEHD---GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGD 478
                 D      + ++   +E       HSEKLA+AFG+I+T     I+V+KNLRICGD
Sbjct: 625 QAGYVPDIRWALVKDEEVEPDEKERRLLYHSEKLAVAFGLISTEEWVPILVVKNLRICGD 684

Query: 479 CHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           CH  IKL+S I  R+  VRD  RFH FK G CSC DYW
Sbjct: 685 CHNAIKLISAITGREITVRDTHRFHCFKEGHCSCGDYW 722



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 172/399 (43%), Gaps = 46/399 (11%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  +     V YN LI+ Y        A+ LF ++RE    ++  T+  ++  C D 
Sbjct: 97  VFDEIPQPD--IVSYNTLIAAYADRGECRPALRLFAEVRELRFGLDGFTLSGVIIACGDD 154

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG---LITWN 117
             L   +  HC  V  G D   SV N ++  Y + G ++  R++F ++ E G    ++WN
Sbjct: 155 VGLVRQL--HCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWN 212

Query: 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
           AMI    Q+      +EL+REM   G+  D  T   VL++   +     G++    +  +
Sbjct: 213 AMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIKS 272

Query: 178 GFGSNPFLNNALINMYARC-GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGH-GEVAVQ 235
           GF  N  + + LI++Y++C G + + R +F+ +    +V W  +I G+  +    E  + 
Sbjct: 273 GFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIW 332

Query: 236 LFDEMLKSGIRPDGTAFVSVLSACS-----------HAGLTDKGLEY--------FYGMK 276
            F EM  +G  PD  +FV V SACS           HA      + Y           M 
Sbjct: 333 CFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMY 392

Query: 277 NKYG--------LQPGPEH----YTCMVDLLGRAGQLNEALELIESML---VEPDGAVWG 321
           +K G            PEH       M+    + G   E+L L E ML   + P+   + 
Sbjct: 393 SKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFI 452

Query: 322 ALLGACKIHKNVELAELAFGKV---IKLEPMNTGYYVLL 357
           A+L AC     VE  +  F  +    ++EP    Y  ++
Sbjct: 453 AVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMI 491



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 123/246 (50%), Gaps = 12/246 (4%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+  Y K   +   R++FD++P+  ++++N +I+ YA  G     L L+ E++ L   
Sbjct: 79  NTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVRELRFG 138

Query: 146 PDAVTFVGVLSSCAHLGAHSVGL--EVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
            D  T  GV+ +C       VGL  ++   +   G+     +NNA++  Y+R G L +AR
Sbjct: 139 LDGFTLSGVIIAC----GDDVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEAR 194

Query: 204 AIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
            +F  M     +  VSW A+I   G H  G  AV+LF EM++ G++ D     SVL+A +
Sbjct: 195 RVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFT 254

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR-AGQLNEALELIESMLVEPDGAV 319
                  G++ F+GM  K G        + ++DL  + AG + E  ++ E  +  PD  +
Sbjct: 255 CVKDLVGGMQ-FHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEE-IAAPDLVL 312

Query: 320 WGALLG 325
           W  ++ 
Sbjct: 313 WNTMIS 318



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 78/200 (39%), Gaps = 31/200 (15%)

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
           F  + S C  L       ++ Q         N F  N LIN YA+   +  AR +FD +P
Sbjct: 50  FTLLYSKCGSLHNAQTSFDLTQY-------PNVFSYNTLINAYAKHSLIHLARQVFDEIP 102

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS---------H 261
           +  +VS+  +I  Y   G    A++LF E+ +     DG     V+ AC          H
Sbjct: 103 QPDIVSYNTLIAAYADRGECRPALRLFAEVRELRFGLDGFTLSGVIIACGDDVGLVRQLH 162

Query: 262 AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV--EPDGAV 319
             +   G + +  + N             ++    R G LNEA  +   M      D   
Sbjct: 163 CFVVVCGYDCYASVNN------------AVLACYSRKGFLNEARRVFREMGEGGGRDEVS 210

Query: 320 WGALLGACKIHKN-VELAEL 338
           W A++ AC  H+  +E  EL
Sbjct: 211 WNAMIVACGQHREGLEAVEL 230



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 5/99 (5%)

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
           +L+N    +Y++CG+L  A+  FD      V S+  +I  Y  H    +A Q+FDE+ + 
Sbjct: 45  YLSNHFTLLYSKCGSLHNAQTSFDLTQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQ- 103

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN-KYGL 281
              PD  ++ ++++A +  G     L  F  ++  ++GL
Sbjct: 104 ---PDIVSYNTLIAAYADRGECRPALRLFAEVRELRFGL 139



 Score = 42.4 bits (98), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 48/231 (20%), Positives = 93/231 (40%), Gaps = 53/231 (22%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD      H  V  N++I+GY  + +  E++ LF  M ++ +  N++T + +L  C   
Sbjct: 404 VFD--TMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSAC--- 458

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT----- 115
                                           V  G V+ G+K F+ + E+  I      
Sbjct: 459 --------------------------------VHTGKVEEGQKYFNMMKERFRIEPEAEH 486

Query: 116 WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQ-I 174
           ++ MI      G A  + E  R ++++   P ++ +  +L +C   G   + ++   + +
Sbjct: 487 YSCMIDLL---GRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFL 543

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIF-----DGMPRKTVVSWTAI 220
           Q   + + P++   L NMYA     ++A  +       G+ +K   SW  I
Sbjct: 544 QLEPYNAAPYV--MLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEI 592


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/512 (37%), Positives = 292/512 (57%), Gaps = 15/512 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            + +  +IS Y    +  +A+ L   M    V  N  T   +L  C     + +    HC
Sbjct: 127 VISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM---LHC 183

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K GL+ D  V + L+ ++ K G  +    +FD++     I WN++I G+AQN  +  
Sbjct: 184 GIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDV 243

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            LEL++ MK  G   +  T   VL +C  L    +G++    I    +  +  LNNAL++
Sbjct: 244 ALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVD 301

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY +CG+L+ A  +F+ M  + V++W+ +I G   +G+ + A++LF+ M  SG +P+   
Sbjct: 302 MYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYIT 361

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            V VL ACSHAGL + G  YF  MK  YG+ P  EHY CM+DLLG+AG+L++A++L+  M
Sbjct: 362 IVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEM 421

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
             EPD   W  LLGAC++ +N+ LAE A  KVI L+P + G Y LLSNIY+ ++  D + 
Sbjct: 422 ECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVE 481

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
            +R  MR+R +KK+PG S++E+  ++H F++GD +H Q VE+ +   KL  L+    G  
Sbjct: 482 EIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSK---KLNQLIHRLTGIG 538

Query: 432 RSDQKN-------SEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
              + N        E+  +    HSEKLA+AFG++       I + KNLRICGDCH+F K
Sbjct: 539 YVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCK 598

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           L SK+  R  ++R   R+HHF+ G CSC DYW
Sbjct: 599 LASKLEIRSIVIRGPIRYHHFQDGKCSCGDYW 630



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 123/241 (51%), Gaps = 9/241 (3%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+ MYVK   ++   +LFDQ+P++ +I+W  MIS Y++  +    LEL   M    V 
Sbjct: 100 NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVR 159

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P+  T+  VL SC   G   V + +   I   G  S+ F+ +ALI+++A+ G  + A ++
Sbjct: 160 PNVYTYSSVLRSCN--GMSDVRM-LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSV 216

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           FD M     + W +IIGG+  +   +VA++LF  M ++G   +     SVL AC+   L 
Sbjct: 217 FDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALL 276

Query: 266 DKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
           + G++ + + +K    L         +VD+  + G L +AL +   M  E D   W  ++
Sbjct: 277 ELGMQAHVHIVKYDQDLILN----NALVDMYCKCGSLEDALRVFNQM-KERDVITWSTMI 331

Query: 325 G 325
            
Sbjct: 332 S 332



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 107/216 (49%), Gaps = 11/216 (5%)

Query: 134 ELYREMKSL------GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
           +L R MK++      G+  D+ T+  ++  C    A   G  + + +  NG     FL N
Sbjct: 41  DLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVN 100

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
            LINMY +   L  A  +FD MP++ V+SWT +I  Y      + A++L   ML+  +RP
Sbjct: 101 VLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRP 160

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           +   + SVL +C+  G++D  +   +    K GL+      + ++D+  + G+  +AL +
Sbjct: 161 NVYTYSSVLRSCN--GMSD--VRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSV 216

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
            + M V  D  VW +++G    +   ++A   F ++
Sbjct: 217 FDEM-VTGDAIVWNSIIGGFAQNSRSDVALELFKRM 251


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/520 (36%), Positives = 315/520 (60%), Gaps = 7/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD   K   +T  ++ +++G+V      +A+ ++ +MR  G+E + V ++ ++  C   
Sbjct: 160 VFDRMRKRDRVT--WSTMVTGFVNAGQPVQAIEMYMRMRRDGLEADEVVIVGVMQACAAT 217

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G   +G   H   ++  + +D  +   L+ MY K G  D  R++F+ +P +  ++W+A+I
Sbjct: 218 GDARMGASVHGYLLRHAMQMDVVISTSLVDMYAKNGLFDQARRVFELMPHRNDVSWSALI 277

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           S  AQ G A   L L+R M+  G+ P++   VG L +C+ LG   +G  +   I      
Sbjct: 278 SQLAQYGNADEALGLFRMMQVSGLHPNSGPVVGALLACSDLGLLKLGKSIHGFI-LRTLE 336

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            +  +  A+I+MY++CG+L  A+ +FD +  + ++SW  +I   G HG G  A+ LF EM
Sbjct: 337 LDRMVGTAVIDMYSKCGSLSSAQMLFDKVVSRDLISWNVMIACCGAHGRGRDALSLFQEM 396

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            ++ +RPD   F S+LSA SH+GL ++G  +F  M N+YG++PG +H  C+VDLL R+G 
Sbjct: 397 KRNEVRPDHATFASLLSALSHSGLVEEGKFWFNCMVNEYGIEPGEKHLVCIVDLLARSGL 456

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           + EA  L+ S+  +P  ++  ALL  C  +  +EL E    K+++L+P + G   L+SN+
Sbjct: 457 VEEANGLVASLHSKPTISILVALLSGCLNNNKLELGESTAEKILELQPGDVGVLALVSNL 516

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+ A+N   +  VR +M++   KK PG S +E++G +H F++ D++H Q  +I +M+ KL
Sbjct: 517 YAAAKNWYKVREVRKLMKDHGSKKAPGCSSIEIRGALHTFVMEDQSHPQHRQILQMVMKL 576

Query: 421 ENLVQEHDGTKRSD--QKNSEEHLNDT--EVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
           ++ +++     +++    + EE + +     HSE+LA AFG++NTSPGT +VV+KNLR+C
Sbjct: 577 DSEMRKMGYIPKTEFVYHDLEEGVKEQLLSRHSERLATAFGLLNTSPGTRLVVIKNLRVC 636

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           GDCH  IK +SKI DR+ +VRDA RFHHFK G CSC DYW
Sbjct: 637 GDCHDAIKYMSKIADREIVVRDAKRFHHFKDGACSCGDYW 676



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 166/348 (47%), Gaps = 6/348 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NAL++ +   +   EA+ +F  +       +S T    L  C   G L  G        
Sbjct: 72  WNALLAAHSRGASPHEALRVFRAL-PPAARPDSTTFTLALSACARLGDLATGEVVTDRAS 130

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             G   D  V + ++ +Y KCG++D   K+FD++ ++  +TW+ M++G+   G     +E
Sbjct: 131 GAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQPVQAIE 190

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           +Y  M+  G+  D V  VGV+ +CA  G   +G  V   +  +    +  ++ +L++MYA
Sbjct: 191 MYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQMDVVISTSLVDMYA 250

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           + G   +AR +F+ MP +  VSW+A+I     +G+ + A+ LF  M  SG+ P+    V 
Sbjct: 251 KNGLFDQARRVFELMPHRNDVSWSALISQLAQYGNADEALGLFRMMQVSGLHPNSGPVVG 310

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
            L ACS  GL   G +  +G   +  L+      T ++D+  + G L+ A  L +  +V 
Sbjct: 311 ALLACSDLGLLKLG-KSIHGFILRT-LELDRMVGTAVIDMYSKCGSLSSAQMLFDK-VVS 367

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLE--PMNTGYYVLLSNI 360
            D   W  ++  C  H     A   F ++ + E  P +  +  LLS +
Sbjct: 368 RDLISWNVMIACCGAHGRGRDALSLFQEMKRNEVRPDHATFASLLSAL 415


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/510 (36%), Positives = 299/510 (58%), Gaps = 8/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +  +++G+  N L S+A++ F +MR QG+ I+  T   +L  C     L  G   H  
Sbjct: 238 ITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAY 297

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++   D +  VG+ L+ MY KC S+      F ++  K +I+W A+I GY QNG +   
Sbjct: 298 IIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEA 357

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + ++ EM+  G+ PD  T   V+SSCA+L +   G +       +G      ++NAL+ +
Sbjct: 358 VRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTL 417

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CG+++ A  +FD M     VSWTA++ GY   G  +  + LF++ML   ++PDG  F
Sbjct: 418 YGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTF 477

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + VLSACS AG  +KG  YF+ M+  +G+ P  +HYTCM+DL  R+G+L EA E I+ M 
Sbjct: 478 IGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMP 537

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           + PD   WG LL AC++  ++E+ + A   +++++P N   YVLL ++++   N + + +
Sbjct: 538 MHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQ 597

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           +R  MR+R++KK+PG S+++ K +VH+F   D++H  +  IY  L+ L + + E +G K 
Sbjct: 598 LRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSKGIYEKLEWLNSKMLE-EGYK- 655

Query: 433 SDQKNSEEHLNDTEV------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
            D  +    + DT+       HSEKLAIAFG++       I ++KNLR+C DCH   KL+
Sbjct: 656 PDVSSVLHDVADTDKVHMVSHHSEKLAIAFGLMFVPHEMPIRIVKNLRVCVDCHNATKLI 715

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SKI  R  +VRDA RFH F +G CSC D+W
Sbjct: 716 SKITGRDILVRDAVRFHKFSNGVCSCGDFW 745



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 179/375 (47%), Gaps = 47/375 (12%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQG--VEINSVTMLCLLPICVDPGYLWLGMCC 69
           TV YNA+I+G+      + AV L+  +   G  V  + +TM  ++      G   LG   
Sbjct: 103 TVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQF 162

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVK-------------------------------CGSV 98
           HC  ++ G  ++  VG+ L+ MY K                               C  V
Sbjct: 163 HCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMV 222

Query: 99  DYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC 158
           +  R+LF+ + ++  ITW  M++G+ QNGL +  L  +R M+  G+  D  TF  +L++C
Sbjct: 223 EEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTAC 282

Query: 159 AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWT 218
             L A   G ++   I    +  N F+ +AL++MY++C ++K A   F  M  K ++SWT
Sbjct: 283 GALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWT 342

Query: 219 AIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278
           A+I GYG +G  E AV++F EM + GI PD     SV+S+C++    ++G ++     + 
Sbjct: 343 ALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQF-----HC 397

Query: 279 YGLQPGPEHY----TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC----KIH 330
             L  G  HY      +V L G+ G + +A  L + ML   D   W AL+       +  
Sbjct: 398 LALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFH-DQVSWTALVTGYAQFGRAK 456

Query: 331 KNVELAELAFGKVIK 345
           + ++L E    K +K
Sbjct: 457 ETIDLFEKMLAKDVK 471



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/342 (21%), Positives = 139/342 (40%), Gaps = 73/342 (21%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG-- 143
           N L++       +D    LF  + ++  +++NA+I+G++  G     + LY  +   G  
Sbjct: 76  NALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSS 135

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA--------- 194
           V P  +T   ++ + + LG  ++G +   QI   GFG N F+ + L+ MYA         
Sbjct: 136 VRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAK 195

Query: 195 ----------------------RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
                                 RC  +++AR +F+ M  +  ++WT ++ G+  +G    
Sbjct: 196 RVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQ 255

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKY------------ 279
           A+  F  M   GI  D   F S+L+AC      ++G + + Y ++  Y            
Sbjct: 256 ALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVD 315

Query: 280 ------GLQPGPE-----------HYTCMVDLLGRAGQLNEALELIESML---VEPDGAV 319
                  ++P               +T ++   G+ G   EA+ +   M    ++PD   
Sbjct: 316 MYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFT 375

Query: 320 WGALLGACKIHKNVELAELAFGKVIKLEPMNTG--YYVLLSN 359
            G+++ +C       LA L  G       + +G  +Y+ +SN
Sbjct: 376 LGSVISSC-----ANLASLEEGAQFHCLALVSGLMHYITVSN 412



 Score = 45.1 bits (105), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 85/221 (38%), Gaps = 50/221 (22%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE +   H  V + AL++GY       E + LF KM  + V+ + VT + +L  C   
Sbjct: 430 LFDEML--FHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRA 487

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G++  G                         Y      D+G    D         +  MI
Sbjct: 488 GFVEKGCS-----------------------YFHSMQKDHGIVPIDD-------HYTCMI 517

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVG-------LEVEQQ 173
             Y+++G      E  ++M    + PDA+ +  +LS+C   G   +G       LE++ Q
Sbjct: 518 DLYSRSGRLKEAEEFIKQMP---MHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQ 574

Query: 174 IQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTV 214
                   NP     L +M+A  GN  +   +  GM  + V
Sbjct: 575 --------NPASYVLLCSMHATKGNWNQVAQLRRGMRDRQV 607



 Score = 42.4 bits (98), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 4/90 (4%)

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           N F  NAL++  A    L    ++F  M ++  VS+ A+I G+   G    AV+L+  +L
Sbjct: 71  NLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLL 130

Query: 242 KSG--IRPDGTAFVSVLSACSHAGLTDKGL 269
           ++G  +RP      +++ A S   L D+ L
Sbjct: 131 RAGSSVRPSRITMSAMVMAAS--ALGDRAL 158


>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 558

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/510 (38%), Positives = 295/510 (57%), Gaps = 9/510 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T+ YN +I  +      S ++S F  MR  G+ +++ T   +L  C     L + +  H 
Sbjct: 53  TIAYNTIIRSHS-RFFPSHSLSYFFSMRSNGIPLDNFTFPFVLKAC---SRLQINLHLHS 108

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + VK+GL  D  V N L+ +Y  CGS++   K+FD++ E+  ++W+ +I+ +  NG A+ 
Sbjct: 109 LIVKYGLGSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASE 168

Query: 132 VLELYREMK-SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
            L+L+ +M+    V PD VT + V+S+ +HLG   +G  V   I   GFG +  L  ALI
Sbjct: 169 ALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGFGVSVALGTALI 228

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +M++RCG++ ++  +F+ M  + V++WTA+I G GIHG    A+ +F  M KSG++PD  
Sbjct: 229 DMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGIHGRSMEALAMFHSMRKSGVQPDYV 288

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            F  VL ACSH GL  +G + F  ++  YG+ P  +HY CMVD+LGRAG LNEA + +E 
Sbjct: 289 TFSGVLVACSHGGLVKEGWDIFESIRKVYGMDPLLDHYGCMVDILGRAGLLNEAYDFVER 348

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M ++P+  +W  LLGAC  H N+ LAE    K+ K+     G  VLLSN+Y  A      
Sbjct: 349 MPMKPNSIIWRTLLGACVNHNNLGLAEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEK 408

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
             +R  MRE+R+ K+PG S + +   +H F+ GD +H Q+ +I + L  +   ++     
Sbjct: 409 ASIRSKMREKRIGKEPGCSSINVDQTIHEFVSGDNSHPQSEDITKFLSSIIGDLRNRGYM 468

Query: 431 KRSDQK----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
            ++         EE  +    HSEKLA+AF I++      I +MKNLRIC DCH F+K +
Sbjct: 469 MQTKNVLHDIEEEEREHSLSYHSEKLAVAFAILSMKDKRTIRIMKNLRICYDCHSFMKHI 528

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           S   +R+ I+RD  RFHHF+ G CSC DYW
Sbjct: 529 SVRFERKIIIRDRNRFHHFEKGLCSCHDYW 558



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 121/235 (51%), Gaps = 7/235 (2%)

Query: 97  SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS 156
           S+ Y R +F ++P    I +N +I  +++    +H L  +  M+S G+  D  TF  VL 
Sbjct: 37  SLSYARYVFSRIPSPDTIAYNTIIRSHSR-FFPSHSLSYFFSMRSNGIPLDNFTFPFVLK 95

Query: 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS 216
           +C+ L    + L +   I   G GS+ F+ NALI +Y  CG+L+ A  +FD M  +  VS
Sbjct: 96  ACSRL---QINLHLHSLIVKYGLGSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVS 152

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEM-LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           W+ +I  +  +G+   A+ LF++M L+  + PD    +SV+SA SH G  + G  +    
Sbjct: 153 WSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELG-RWVRAF 211

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
             + G        T ++D+  R G ++E++ + E M V  +   W AL+    IH
Sbjct: 212 IGRLGFGVSVALGTALIDMFSRCGSIDESIVVFEKMAVR-NVLTWTALINGLGIH 265


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/522 (39%), Positives = 306/522 (58%), Gaps = 18/522 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE       T  +  ++SGY  N  V  A  LF  M E+  E++   ML         
Sbjct: 198 LFDEMKVRNVFT--WTTMVSGYAKNGRVDVARKLFEVMPERN-EVSWTAMLM-------- 246

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVG-NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
           GY   G       +   + + + V  N ++  +   G +   R +F+ + E+   TWNAM
Sbjct: 247 GYTQSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAM 306

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I  + + GL    L L+  M+  GV  +  + + VLS CA L +   G +V  ++  + F
Sbjct: 307 IKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEF 366

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             + ++ + LI MY +CG+L +A+ IF+    K VV W ++I GY  HG GE A+ +F +
Sbjct: 367 DQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHD 426

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M  SG++PD   F+ VLSACS++G   +G E F  MK  Y ++PG EHY CMVDLLGRAG
Sbjct: 427 MCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAG 486

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
           +++EA+EL+E M +EPD  VWGALLGAC+ H  ++LAE+A  K+ KLEP N G YVLLS+
Sbjct: 487 RVDEAMELVEKMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGPYVLLSH 546

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGD-RNHHQTVEIYRMLD 418
           +Y+       +  +R  +  RR+ K PG S++E++ +VH+F  GD ++H +   I +ML+
Sbjct: 547 MYATKGRWRDVEVLRKKI-NRRVIKFPGCSWIEVEKKVHMFTGGDSKSHPEQHMITQMLE 605

Query: 419 KLENLVQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLR 474
           KL   ++E     DG+      + EE  +    HSE+LA+A+G++    G  I VMKNLR
Sbjct: 606 KLSGFLREAGYCPDGSFVLHDVDEEEKTHSLGYHSERLAVAYGLLKVPEGMPIRVMKNLR 665

Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +CGDCH  IKL++K+  R+ I+RDA RFHHFK G CSCKD+W
Sbjct: 666 VCGDCHSAIKLIAKVTGREIILRDANRFHHFKDGSCSCKDFW 707



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 153/358 (42%), Gaps = 58/358 (16%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD +         +NA++S Y  +    +A+ LF +M ++    N+V+           
Sbjct: 41  VFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMPQR----NTVSF---------- 86

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
                                    N +++ YVK G V   RK+FD +PE+ +++W +M+
Sbjct: 87  -------------------------NGMISGYVKNGMVADARKVFDVMPERNVVSWTSMV 121

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GY Q G+     +L+ EM    V    V   G+L       A  +   + ++       
Sbjct: 122 RGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEK------- 174

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            +  +   +I  Y + G L +AR +FD M  + V +WT ++ GY  +G  +VA +LF+ M
Sbjct: 175 -DVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVM 233

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            +     +  ++ ++L   + +G   +  E F  M  K+ +         M+   G AG+
Sbjct: 234 PER----NEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIVACNE-----MILQFGLAGE 284

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           ++ A  + E M  E D   W A++   +  K ++L  L     ++ E +   +  ++S
Sbjct: 285 MHRARMMFEGM-KERDEGTWNAMIKVFE-RKGLDLEALGLFARMQREGVALNFPSMIS 340



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 111/242 (45%), Gaps = 28/242 (11%)

Query: 89  MTMYVKCGSVDYGRKLFDQ--VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCP 146
           ++ Y + G +   RK+FD   +P++ + +WNAM+S Y ++      L L+ +M       
Sbjct: 26  ISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMPQ----R 81

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN----NALINMYARCGNLKKA 202
           + V+F G++S     G  +   +V        F   P  N     +++  Y + G +++A
Sbjct: 82  NTVSFNGMISGYVKNGMVADARKV--------FDVMPERNVVSWTSMVRGYVQEGMVEEA 133

Query: 203 RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262
             +F  MPR+ VVSWT +IGG       + A +LFD + +     D     +++      
Sbjct: 134 EKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEK----DVVVVTNMIGGYCQV 189

Query: 263 GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGA 322
           G  D+  E F  MK +         +T MV    + G+++ A +L E M  E +   W A
Sbjct: 190 GRLDEARELFDEMKVRNVFT-----WTTMVSGYAKNGRVDVARKLFEVM-PERNEVSWTA 243

Query: 323 LL 324
           +L
Sbjct: 244 ML 245



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 86/197 (43%), Gaps = 21/197 (10%)

Query: 186 NNALINMYARCGNLKKARAIFDG--MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
           N + I+ Y R G++  AR +FD   +P++T+ SW A++  Y        A+ LFD+M + 
Sbjct: 22  NTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMPQR 81

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
               +  +F  ++S     G+     + F  M  +  +      +T MV    + G + E
Sbjct: 82  ----NTVSFNGMISGYVKNGMVADARKVFDVMPERNVVS-----WTSMVRGYVQEGMVEE 132

Query: 304 ALELIESMLVEPDGAV--W----GALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
           A +L   M   P   V  W    G LL   +I    +L ++   K + +     G Y  +
Sbjct: 133 AEKLFWEM---PRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQV 189

Query: 358 SNIYSEARNLDGIMRVR 374
             +  EAR L   M+VR
Sbjct: 190 GRL-DEARELFDEMKVR 205


>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 691

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/519 (36%), Positives = 302/519 (58%), Gaps = 5/519 (0%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +       +  ++ G V     SEA  LF  M ++  +  S T   ++      
Sbjct: 175 LFDEMPEKD--VASWMTMVGGLVDTGNFSEAFRLFLCMWKEFNDGRSRTFATMIRASAGL 232

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G + +G   H   +K G+  D  V   L+ MY KCGS++    +FDQ+PEK  + WN++I
Sbjct: 233 GLVQVGKQIHSCALKRGVGDDHFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSII 292

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           + YA +G +   L LY EM+  G   D  T   V+  CA L +     +    +  +GF 
Sbjct: 293 ASYALHGYSEEALSLYFEMRDSGTTVDHFTISIVIRICARLASLEHAKQAHAALVRHGFA 352

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           ++   N AL++ Y++ G ++ AR +F+ M  K V+SW A+I GYG HG G+ AV++F++M
Sbjct: 353 TDIVANTALVDFYSKWGRMEDARHVFNRMRHKNVISWNALIAGYGNHGQGQEAVEMFEQM 412

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           L+ G+ P    F++VLSACS++GL+ +G E FY MK  + ++P   HY CM++LLGR   
Sbjct: 413 LQEGVTPTHVTFLAVLSACSYSGLSQRGWEIFYSMKRDHKVKPRAMHYACMIELLGRESL 472

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L+EA  LI +   +P   +W ALL AC++HKN+EL +LA  K+  +EP     Y++L N+
Sbjct: 473 LDEAYALIRTAPFKPTANMWAALLTACRMHKNLELGKLAAEKLYGMEPEKLCNYIVLLNL 532

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+ +  L     +   ++++ L+  P  S+VE+K + + F+ GD++H QT EIY+ +D L
Sbjct: 533 YNSSGKLKEAAGILQTLKKKGLRMLPACSWVEVKKQPYAFLCGDKSHSQTKEIYQKVDNL 592

Query: 421 ENLVQEHDGTKRSDQ---KNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICG 477
              + +H   + ++       EE     + HSEKLAIAFG+INT   T + + +  R+CG
Sbjct: 593 MVEICKHGYAEENETLLPDVDEEEQRILKYHSEKLAIAFGLINTPHWTPLQITQGHRVCG 652

Query: 478 DCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           DCH  IKL++ +  R+ +VRDA+RFHHF++G CSC DYW
Sbjct: 653 DCHSAIKLIAMVTGREIVVRDASRFHHFRNGSCSCGDYW 691



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 133/290 (45%), Gaps = 39/290 (13%)

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           +  G + D  V N ++ M+VKCG +   RKLFD++PEK + +W  M+ G    G  +   
Sbjct: 145 INSGFEPDLYVMNRVLFMHVKCGLMLDARKLFDEMPEKDVASWMTMVGGLVDTGNFSEAF 204

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
            L+  M        + TF  ++ + A LG   VG ++       G G + F++ ALI+MY
Sbjct: 205 RLFLCMWKEFNDGRSRTFATMIRASAGLGLVQVGKQIHSCALKRGVGDDHFVSCALIDMY 264

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
           ++CG+++ A  +FD MP KT V W +II  Y +HG+ E A+ L+ EM  SG   D     
Sbjct: 265 SKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSLYFEMRDSGTTVDHFTIS 324

Query: 254 SVLSAC-----------SHAGLTDKGLEY----------FYGMKNKYGLQPGPEH----- 287
            V+  C           +HA L   G             FY   +K+G      H     
Sbjct: 325 IVIRICARLASLEHAKQAHAALVRHGFATDIVANTALVDFY---SKWGRMEDARHVFNRM 381

Query: 288 -------YTCMVDLLGRAGQLNEALELIESMLVE---PDGAVWGALLGAC 327
                  +  ++   G  GQ  EA+E+ E ML E   P    + A+L AC
Sbjct: 382 RHKNVISWNALIAGYGNHGQGQEAVEMFEQMLQEGVTPTHVTFLAVLSAC 431



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 98/209 (46%), Gaps = 8/209 (3%)

Query: 132 VLELYR--EMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
            +EL+   E++  G    A T+  ++S+C  L +      V   +  +GF  + ++ N +
Sbjct: 100 AMELFEILELEHDGYGVGASTYDALVSACVGLRSIRGVKRVFNYMINSGFEPDLYVMNRV 159

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           + M+ +CG +  AR +FD MP K V SW  ++GG    G+   A +LF  M K       
Sbjct: 160 LFMHVKCGLMLDARKLFDEMPEKDVASWMTMVGGLVDTGNFSEAFRLFLCMWKEFNDGRS 219

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYT--CMVDLLGRAGQLNEALEL 307
             F +++ A +  GL   G +  +    K G+  G +H+    ++D+  + G + +A  +
Sbjct: 220 RTFATMIRASAGLGLVQVGKQ-IHSCALKRGV--GDDHFVSCALIDMYSKCGSIEDAHCV 276

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELA 336
            + M  E     W +++ +  +H   E A
Sbjct: 277 FDQM-PEKTTVGWNSIIASYALHGYSEEA 304


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/508 (37%), Positives = 293/508 (57%), Gaps = 15/508 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            + +  +IS Y    +  +A+ L   M   GV  N  T   +L  C     + +    HC
Sbjct: 79  VISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGMSDVRM---LHC 135

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K GL+ D  V + L+ ++ K G  +    +FD++     I WN++I G+AQN  +  
Sbjct: 136 GIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDV 195

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            LEL++ MK  G   +  T   VL +C  L    +G++    I    +  +  LNNAL++
Sbjct: 196 ALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVD 253

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY +CG+L+ AR +F+ M  + V++W+ +I G   +G+ + A++LF+ M  SG +P+   
Sbjct: 254 MYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNYIT 313

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            V VL ACSHAGL + G  YF  MK  YG+ PG EHY CM+DLLG+AG+L++A++L+  M
Sbjct: 314 IVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLLNEM 373

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
             EPD   W  LLGAC++ +N+ LAE A  KVI L+P + G Y +LSNIY+ ++  D + 
Sbjct: 374 ECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTVLSNIYANSQKWDSVE 433

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
            +R  MR+  +KK+PG S++E+  ++H F++GD +H Q VE+ +   KL  L+    G  
Sbjct: 434 EIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDESHPQIVEVNK---KLNQLIHRLIGIG 490

Query: 432 RSDQKN-------SEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
              + N        E+  +    HSEKLA+AFG++       I + KNLRICGDCH+F K
Sbjct: 491 YVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPSEKVIRIRKNLRICGDCHVFCK 550

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSC 512
           L SK+ +R  ++RD  R+HHF+ G CSC
Sbjct: 551 LASKLENRNIVIRDPIRYHHFQDGKCSC 578



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 123/241 (51%), Gaps = 9/241 (3%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+ MYVK   ++   +LFDQ+P++ +I+W  MIS Y++  +    LEL   M   GV 
Sbjct: 52  NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVR 111

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P+  T+  VL +C   G   V + +   I   G  S+ ++ +ALI+++A+ G  + A ++
Sbjct: 112 PNVYTYSSVLRACN--GMSDVRM-LHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSV 168

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           FD M     + W +IIGG+  +   +VA++LF  M ++G   +     SVL AC+   L 
Sbjct: 169 FDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALL 228

Query: 266 DKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
           + G++ + + +K    L         +VD+  + G L +A  +   M  E D   W  ++
Sbjct: 229 ELGMQAHVHIVKYDQDLILN----NALVDMYCKCGSLEDARRVFNQM-KERDVITWSTMI 283

Query: 325 G 325
            
Sbjct: 284 S 284



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 99/188 (52%), Gaps = 7/188 (3%)

Query: 139 MKSLGVCPDAVTFVGVLSSC-AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG 197
           ++S G+  D+ T+  ++  C +H   H   L + + +  NG     FL N LINMY +  
Sbjct: 4   LQSHGLWADSATYSELIKCCLSHRAVHEGNL-ICRHLYFNGHQPMMFLVNVLINMYVKFN 62

Query: 198 NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257
            L  A  +FD MP++ V+SWT +I  Y      + A++L   ML+ G+RP+   + SVL 
Sbjct: 63  LLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLR 122

Query: 258 ACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDG 317
           AC+  G++D  +   +    K GL+      + ++D+  + G+  +AL + + M V  D 
Sbjct: 123 ACN--GMSD--VRMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEM-VTGDA 177

Query: 318 AVWGALLG 325
            VW +++G
Sbjct: 178 IVWNSIIG 185


>gi|224088870|ref|XP_002308572.1| predicted protein [Populus trichocarpa]
 gi|222854548|gb|EEE92095.1| predicted protein [Populus trichocarpa]
          Length = 433

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/433 (41%), Positives = 269/433 (62%), Gaps = 4/433 (0%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           ++  + + G V   +KLFD++PE+ +I+WN M+  Y  NG     LE ++ M+  G+ PD
Sbjct: 1   MLAGFARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPD 60

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
             T V +LS+ A L     G  +   I +        +  AL++MYA+CG ++++R +F+
Sbjct: 61  EATLVTMLSASAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFE 120

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            MPR+ V +W  +I G   HG G+ A+ LF+  L  G+ P    FV VL+ACS AGL  +
Sbjct: 121 NMPRRDVSTWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVKE 180

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           G  YF  M + YG++P  EHY CMVDLLGRAG + EA+++IESM + PD  +W  +L AC
Sbjct: 181 GRHYFQMMTDSYGIEPEMEHYGCMVDLLGRAGLVFEAIKVIESMAISPDPVLWAMVLCAC 240

Query: 328 KIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPG 387
           +IH   EL E    ++I+L+P   G+YV L++IY+ +R  + ++RVR +M ER   K  G
Sbjct: 241 RIHGLAELGEKIGNRLIELDPTYDGHYVQLASIYANSRKWEDVVRVRRLMAERNTSKVAG 300

Query: 388 YSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH----DGTKRSDQKNSEEHLN 443
           +S +E +G+VH F+ G R H Q++EI +ML+ +E  +       + +        EE  N
Sbjct: 301 WSLIEARGKVHRFVAGHREHEQSLEIQKMLEIIETRLAAAGYVPNVSPVLHDIGEEEKEN 360

Query: 444 DTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFH 503
             +VHSE+LAIAFG++ T PG+ I ++KNLR+C DCH   K++S++ +R+ IVRD +RFH
Sbjct: 361 AIKVHSERLAIAFGLLVTGPGSCIRIVKNLRVCWDCHEVTKMISRVFEREIIVRDGSRFH 420

Query: 504 HFKSGFCSCKDYW 516
           HFK G CSC DYW
Sbjct: 421 HFKEGKCSCLDYW 433



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 123/252 (48%), Gaps = 6/252 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +     + +N ++  YV N  + EA+  F +MRE G+  +  T++ +L      
Sbjct: 17  LFDEMPERD--VISWNTMLMAYVHNGKLGEALECFKRMRESGLVPDEATLVTMLSASAQL 74

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H I     L +  S+G  L+ MY KCG ++  R LF+ +P + + TWN MI
Sbjct: 75  CLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFENMPRRDVSTWNVMI 134

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            G A +GL    L L+    + G+ P  VTFVGVL++C+  G    G     Q+  + +G
Sbjct: 135 CGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVKEGRHY-FQMMTDSYG 193

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLF 237
             P + +   ++++  R G + +A  + + M      V W  ++    IHG  E+  ++ 
Sbjct: 194 IEPEMEHYGCMVDLLGRAGLVFEAIKVIESMAISPDPVLWAMVLCACRIHGLAELGEKIG 253

Query: 238 DEMLKSGIRPDG 249
           + +++     DG
Sbjct: 254 NRLIELDPTYDG 265


>gi|297820424|ref|XP_002878095.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323933|gb|EFH54354.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 651

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/510 (38%), Positives = 299/510 (58%), Gaps = 26/510 (5%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVE----------INSVTMLCLLPICVDPG 61
           T  +N LI G+ ++S     +  + +M    V           + +   + L+P C++  
Sbjct: 71  TSAWNYLIRGFSISSSPLYTILYYNRMLLSSVSRPDIFTFSFALKACERIRLIPKCLE-- 128

Query: 62  YLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMIS 121
                   H   ++ G   D  V   L+  Y   GSV+   K+FD++P + L++WNAMIS
Sbjct: 129 -------LHGSVIRSGFLADAIVSTNLVRCYSANGSVEIASKVFDEMPVRDLVSWNAMIS 181

Query: 122 GYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGS 181
            ++  GL      +Y  M + GVC DA T V +LSSCAH+ A ++G+ + +        S
Sbjct: 182 CFSHAGLHHQAFSMYSRMANEGVCVDAYTIVALLSSCAHVSALNMGVMLHRIACDIRCES 241

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
           + F+ NALI+MYA+CG+L+ A  +F GM ++ V++W ++I GYG+HGHG  A+  F +M+
Sbjct: 242 SVFVCNALIDMYAKCGSLENAVGVFKGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMV 301

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301
            SG+RP+   F+ +L  CSH GL  +G+E+F  M +++ L P  +HY CMVDL GRAGQL
Sbjct: 302 ASGVRPNAVTFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLFGRAGQL 361

Query: 302 NEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY 361
            +ALE+I +     D  +W  LLG+CKIH+N+EL E+A  K+++LE  N G YVL+++IY
Sbjct: 362 EKALEMIHTSSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIY 421

Query: 362 SEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLE 421
           S A +  G   +R ++R   L+  PG+S++E+  +VH F++ D+ H ++  IY  L ++ 
Sbjct: 422 SAANDAQGFASMRKLIRSHDLRTIPGWSWIEIGDQVHKFVIDDKMHPESALIYSELGEVI 481

Query: 422 NLVQEHDGTKRSDQKNSEEHLNDT------EVHSEKLAIAFGIINTSPGTEIVVMKNLRI 475
           N      G K  D   +   L+D         HSEKLAIA+G++ T+ GT + + KNLR+
Sbjct: 482 NRAIL-AGYKPEDSNRTAHTLSDRCLESADTSHSEKLAIAYGLMRTTAGTTLRITKNLRV 540

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHF 505
           C DCH F K VSK  +R+ IVRD  RFH F
Sbjct: 541 CRDCHSFTKYVSKAFNREIIVRDRVRFHQF 570


>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
          Length = 830

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/529 (38%), Positives = 313/529 (59%), Gaps = 17/529 (3%)

Query: 1   VFDES-IKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD 59
           VFDE+ +K+  +   +NA++    L     EA++    M   GV ++S +    L  C+ 
Sbjct: 306 VFDEAPVKNIFV---WNAMLKALALADHGEEALTCLADMGRLGVPVDSYSYAHGLKACIA 362

Query: 60  PGYLWLGMCC-----HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLI 114
                L         H   ++ G  L   V   L+  Y K G V Y  ++F  +P++ L+
Sbjct: 363 ASASHLPASARVREMHAHAIRRGYGLHTHVATTLIDCYAKLGIVSYAERVFTSMPDRNLV 422

Query: 115 TWNAMISGYAQNGLATHVLELYREMKS--LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
           +W+AMI  YA+N      +++++EM +    + P+++T V VL +CA + A   G  +  
Sbjct: 423 SWSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVNALGQGKVLHA 482

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM-PRKTVVSWTAIIGGYGIHGHGE 231
            I   GF     + NAL+ MY +CG L+  R IF+ +  R+ VVSW ++I GYG+HG G 
Sbjct: 483 YILRRGFDLLVSVLNALMAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLISGYGMHGFGR 542

Query: 232 VAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCM 291
            ++Q+F+EM++ GI P+   FVSVL ACSH GL ++G + F  M  +Y + P  EHY CM
Sbjct: 543 ESLQVFEEMIEEGISPNIITFVSVLGACSHVGLVEQGKKLFESMV-EYNVTPRAEHYACM 601

Query: 292 VDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351
           VDLLGRAG+L+EA+ELI+SM ++P   VWG+LLGAC+IH +VE AE+A   +  LEP N 
Sbjct: 602 VDLLGRAGRLDEAVELIQSMRIQPSPQVWGSLLGACRIHGHVEYAEMACSHLFDLEPRNA 661

Query: 352 GYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTV 411
           G YVLL++IY+ A+  + +  ++ ++ E  L+K PG S++E+K +++ F+  D  + Q  
Sbjct: 662 GNYVLLADIYARAKLQNQVDVLKELLEEHALEKVPGCSWIEVKKKLYSFVSVDNKNPQVE 721

Query: 412 EIYRMLDKLENLVQE--HDGTKRSDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEI 467
           E+  ++ +    ++   +    RS   + EE   +  +  HSEKLA+AFG+I T  G  I
Sbjct: 722 ELQALIGEFVTQMKNEGYVPDTRSVLYDIEEEEKERILLGHSEKLAVAFGLIKTGSGEAI 781

Query: 468 VVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            + KNLR+C DCH   K +SK  DR+ +VRD  RFHHF++G CSC+DYW
Sbjct: 782 RITKNLRLCEDCHSVTKFISKFTDREIVVRDVNRFHHFRNGVCSCRDYW 830



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 89/189 (47%), Gaps = 14/189 (7%)

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG-FGSNPFLNNALINMYARCGNLKKARA 204
           P   T+  +L + A     ++   V ++++A+  F S+PFL+  LI  YA    L  AR 
Sbjct: 246 PTQRTYESLLLAAARARDTALAAAVHRRLEADPVFRSDPFLSTRLIEAYAALSALPAARQ 305

Query: 205 IFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC----- 259
           +FD  P K +  W A++    +  HGE A+    +M + G+  D  ++   L AC     
Sbjct: 306 VFDEAPVKNIFVWNAMLKALALADHGEEALTCLADMGRLGVPVDSYSYAHGLKACIAASA 365

Query: 260 SHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGA 318
           SH   + +  E + + ++  YGL       T ++D   + G ++ A  +  SM   PD  
Sbjct: 366 SHLPASARVREMHAHAIRRGYGLH--THVATTLIDCYAKLGIVSYAERVFTSM---PDRN 420

Query: 319 V--WGALLG 325
           +  W A++G
Sbjct: 421 LVSWSAMIG 429


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/516 (38%), Positives = 309/516 (59%), Gaps = 12/516 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++I  Y  +   ++A++L+ +M  +G +I+  T+  +L       +L  G   H  
Sbjct: 206 VSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGK 265

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVD---YGRKLFDQVPEKGLITWNAMISGYAQNGL- 128
            +K G   +  VG+ L+  Y KCG  D      K+F ++    L+ WN MISGY+ N   
Sbjct: 266 LIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTMISGYSMNEEH 325

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ-QIQANGFGSNPFLNN 187
           +   ++ +R+M+ +G  PD  +FV V S+C++L + S G ++    I++N   +   +NN
Sbjct: 326 SEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPSNRISVNN 385

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           ALI++Y + GNL  AR +FD MP    VS+  +I GY  HGHG  A++L+  ML SGI P
Sbjct: 386 ALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIAP 445

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           +   FV++LSAC+H G  D+G +YF  MK  + ++P  EHY+CM+DLLGRAG+L EA   
Sbjct: 446 NNITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERF 505

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNL 367
           I++M  +P    W ALLGAC+ HKN+ LAE A  +++ ++P+    YV+L+N+Y++A   
Sbjct: 506 IDAMPYKPGSVAWAALLGACRKHKNMALAERAAKELMVMQPLAATPYVMLANMYADAGKW 565

Query: 368 DGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD-------KL 420
           + +  VR  MR +R++K PG S++E+K + H+F+  D +H    E+   L+       K+
Sbjct: 566 EEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKV 625

Query: 421 ENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCH 480
             ++ +     + D+    E       HSEKLA+AFG+++T  G EIVV+KNLRICGDCH
Sbjct: 626 GYVMDKKWAMVKEDEAGEGEEEMRLGHHSEKLAVAFGLMSTRDGEEIVVVKNLRICGDCH 685

Query: 481 LFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
             IK +S +  R+ IVRD  RFH FK G CSC DYW
Sbjct: 686 NAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 118/406 (29%), Positives = 176/406 (43%), Gaps = 60/406 (14%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE+ +    TV YN LISGY        A+ LF +MRE G E++  T+  L+  C D 
Sbjct: 96  LFDENPQPD--TVSYNTLISGYADARETVAAMVLFKRMRELGFEVDGFTLSGLIAACCDR 153

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCG------SVDYGRK-LFDQVPEKGL 113
             L   +  HC  V  G D   SV N  +T Y K G      SV YG   L D+V     
Sbjct: 154 VDLIKQL--HCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDGLRDEV----- 206

Query: 114 ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQ 173
            +WN+MI  Y Q+      L LY+EM   G   D  T   VL++   L     G +   +
Sbjct: 207 -SWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGK 265

Query: 174 IQANGFGSNPFLNNALINMYARCG---NLKKARAIFDGMPRKTVVSWTAIIGGYGIH-GH 229
           +   GF  N  + + LI+ Y++CG    +  +  +F  +    +V W  +I GY ++  H
Sbjct: 266 LIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTMISGYSMNEEH 325

Query: 230 GEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG----- 284
            E AV+ F +M + G RPD  +FV V SACS+     +G +  +G+  K  +        
Sbjct: 326 SEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQ-IHGLAIKSNIPSNRISVN 384

Query: 285 -----------------------PE----HYTCMVDLLGRAGQLNEALELIESML---VE 314
                                  PE     + CM+    + G   EAL L + ML   + 
Sbjct: 385 NALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIA 444

Query: 315 PDGAVWGALLGACKIHKNVELAELAFG---KVIKLEPMNTGYYVLL 357
           P+   + A+L AC     V+  +  F    +  K+EP    Y  ++
Sbjct: 445 PNNITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEAEHYSCMI 490



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 123/247 (49%), Gaps = 16/247 (6%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N ++  Y K   +   R+LFD+ P+   +++N +ISGYA        + L++ M+ LG  
Sbjct: 78  NVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELGFE 137

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ----ANGFGSNPFLNNALINMYARCGNLKK 201
            D  T  G++++C         +++ +Q+     + GF S   +NNA +  Y++ G L++
Sbjct: 138 VDGFTLSGLIAACCDR------VDLIKQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLRE 191

Query: 202 ARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
           A ++F GM   +  VSW ++I  YG H  G  A+ L+ EM+  G + D     SVL+A +
Sbjct: 192 AVSVFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALT 251

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG---QLNEALELIESMLVEPDG 317
                  G + F+G   K G        + ++D   + G    ++++ ++ + +L  PD 
Sbjct: 252 SLDHLIGGRQ-FHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEIL-SPDL 309

Query: 318 AVWGALL 324
            +W  ++
Sbjct: 310 VLWNTMI 316



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            S+ +L+N  +N+Y++CG L  ARA FD      V S+  I+  Y       +A QLFDE
Sbjct: 40  ASSTYLSNHFVNLYSKCGCLSYARAAFDSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDE 99

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
                 +PD  ++ +++S  + A  T   +  F  M+
Sbjct: 100 ----NPQPDTVSYNTLISGYADARETVAAMVLFKRMR 132



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 71/185 (38%), Gaps = 18/185 (9%)

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
           FV + S C  L       +  ++        N F  N ++  YA+   +  AR +FD  P
Sbjct: 49  FVNLYSKCGCLSYARAAFDSTEE-------PNVFSYNVIVKAYAKDSKIHIARQLFDENP 101

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270
           +   VS+  +I GY        A+ LF  M + G   DG     +++AC       K L 
Sbjct: 102 QPDTVSYNTLISGYADARETVAAMVLFKRMRELGFEVDGFTLSGLIAACCDRVDLIKQLH 161

Query: 271 YFYGMKNKYGLQPGPEHYT----CMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
            F        +  G + Y+      V    + G L EA+ +   M    D   W +++ A
Sbjct: 162 CF-------AVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDGLRDEVSWNSMIVA 214

Query: 327 CKIHK 331
              HK
Sbjct: 215 YGQHK 219


>gi|218192399|gb|EEC74826.1| hypothetical protein OsI_10663 [Oryza sativa Indica Group]
          Length = 703

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/530 (38%), Positives = 303/530 (57%), Gaps = 29/530 (5%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQ----GVEINSVTMLCLLPI 56
           +FD   +  H    ++AL+SGY  +     A++L+ +M+E+    G + N  T    L  
Sbjct: 117 LFDRMPQRDHFA--WSALVSGYARHGQPEAALALYRRMQEEPGNDGAD-NEFTASSALAA 173

Query: 57  CVDPGYLWLGMCCHCICVKFGLDL---DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL 113
                    G   HC  V+ G+D    D  + + L  MY KCG VD  R++FD++P +  
Sbjct: 174 AAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDA 233

Query: 114 ITWNAMISGYAQNGLATHVLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
           ++W AM+  Y   G       L+  M ++ GV P+  T+ GVL +CA     S G +V  
Sbjct: 234 VSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAEFAVESFGRQVHG 293

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
           ++  +G G + F  +AL+ MY++CG++  A  +F+ M +  +VSWTA+I GY  +G  E 
Sbjct: 294 RMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEE 353

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
           A++ FD  L+SGI+PD   FV VLSAC+HAGL DKGLE F+ +K +Y ++   +HY C++
Sbjct: 354 ALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVI 413

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTG 352
           DLL R+GQ   A ++I +M V+P+  +W +LLG C+IHKNV LA  A   + ++EP N  
Sbjct: 414 DLLSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPENPA 473

Query: 353 YYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVE 412
            YV L+NIY+     D +  VR +M  + + K P  S++E+  RVH+F+VGD++H +  E
Sbjct: 474 TYVTLANIYASVGLFDEVEDVRRIMESKGITKMPASSWIEVGRRVHVFLVGDKSHPKADE 533

Query: 413 IYRMLDKLE-NLVQE----------HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINT 461
           IY +L KL   +V+E          HD          E+   D   HSE+LA+AFGII +
Sbjct: 534 IYALLKKLYVKMVEEGYVADIEFVLHD-------VEDEQKEQDIGYHSERLAVAFGIIAS 586

Query: 462 SPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCS 511
             G+ I V KNLRICGDCH  IKL+S+IV R  IVRD+        G+ S
Sbjct: 587 PEGSPIKVFKNLRICGDCHAAIKLISQIVQRDIIVRDSNSLKEQDIGYHS 636



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 145/522 (27%), Positives = 226/522 (43%), Gaps = 68/522 (13%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
            V + A++  Y       E   LF  M R +GV  N  T   +L  C +      G   H
Sbjct: 233 AVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAEFAVESFGRQVH 292

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
               K G        + L+ MY KCG +    ++F+ + +  L++W A+ISGYAQNG   
Sbjct: 293 GRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPE 352

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA-L 189
             L  +      G+ PD VTFVGVLS+CAH G    GLE+   I+      +   + A +
Sbjct: 353 EALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACV 412

Query: 190 INMYARCGNLKKARAIFDGM---PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           I++ +R G  ++A  +   M   P K +  W +++GG  IH                   
Sbjct: 413 IDLLSRSGQFERAEKMIGNMAVKPNKFL--WASLLGGCRIH------------------- 451

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
                         + GL  +  E  + ++ +      P  Y  + ++    G  +E  +
Sbjct: 452 -------------KNVGLARRAAEALFEIEPE-----NPATYVTLANIYASVGLFDEVED 493

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366
           +    ++E  G          ++ + V +    F    K  P     Y LL  +Y +   
Sbjct: 494 V--RRIMESKGITKMPASSWIEVGRRVHV----FLVGDKSHPKADEIYALLKKLYVKMVE 547

Query: 367 LDGIMRVRMMM---RERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD----- 418
              +  +  ++    + + ++D GY    L      F +        +++++ L      
Sbjct: 548 EGYVADIEFVLHDVEDEQKEQDIGYHSERL---AVAFGIIASPEGSPIKVFKNLRICGDC 604

Query: 419 ----KLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLR 474
               KL + + + D   R      E+   D   HSE+LA+AFGII +  G+ I V KNLR
Sbjct: 605 HAAIKLISQIVQRDIIVRDSNSLKEQ---DIGYHSERLAVAFGIIASPEGSPIKVFKNLR 661

Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           ICGDCH  IKL+S+IV R  IVRD+ RFHHFK G CSC+DYW
Sbjct: 662 ICGDCHTAIKLISQIVQRDIIVRDSNRFHHFKDGICSCRDYW 703



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 116/231 (50%), Gaps = 9/231 (3%)

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL---GVCPDAVTFVGVLSS 157
            R+LFD++P++    W+A++SGYA++G     L LYR M+         +  T    L++
Sbjct: 114 ARELFDRMPQRDHFAWSALVSGYARHGQPEAALALYRRMQEEPGNDGADNEFTASSALAA 173

Query: 158 CAHLGAHSVGLEVEQQIQANGF---GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTV 214
            A       G E+   +   G    G +  L +AL +MYA+CG +  AR +FD MP +  
Sbjct: 174 AAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDA 233

Query: 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKS-GIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
           VSWTA++  Y   G G    +LF  ML++ G+RP+   +  VL AC+   +   G +  +
Sbjct: 234 VSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAEFAVESFGRQ-VH 292

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
           G   K G        + ++ +  + G +  A+ + E+M  +PD   W A++
Sbjct: 293 GRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAM-AKPDLVSWTAVI 342



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 186 NNALINMYARCG-NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           +N LI+  +R   +L  AR +FD MP++   +W+A++ GY  HG  E A+ L+  M
Sbjct: 97  HNTLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGYARHGQPEAALALYRRM 152


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/521 (38%), Positives = 298/521 (57%), Gaps = 12/521 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE        V +  +IS Y  ++L  +A+     M  +GV  N  T   +L  C   
Sbjct: 73  LFDEMPDRN--VVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRAC--D 128

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L L    H   +K GL+ D  V + L+  Y K G       +F+++    L+ WN++I
Sbjct: 129 GLLNLRQL-HGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSII 187

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            G+AQN      L LY+ MK      D  T   VL +C  L    +G +V   +    + 
Sbjct: 188 GGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQV--HVHVLKYD 245

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGM-PRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            +  LNNAL++MY +CG+L+ A  +F  M   K V+SW+ +I G   +G    A++LF+ 
Sbjct: 246 QDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEA 305

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M   G +P+    + VL ACSHAGL + G  YF  MK  +G+ PG EHY C++DLLGRAG
Sbjct: 306 MKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAG 365

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
           +L+EA++LI  M  EPD   W  LLGAC++HKNV+LA  A  +++KL+P + G Y+LLSN
Sbjct: 366 KLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPADAGTYILLSN 425

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
           IY+ ++  + +  VR  MR R +KKDPG S++E+  +VH F++GD +H +  EI R L +
Sbjct: 426 IYANSQKWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGDNSHPRIEEIKRELSQ 485

Query: 420 LENLVQEHDGTKRSD---QKNSEEHLNDT-EVHSEKLAIAFGIINTSPGTEIVVMKNLRI 475
           L   +        ++   Q    E + D+ + HSEKLAI FG+++      I + KNLRI
Sbjct: 486 LIQRLMRLGYVPDTNFVLQDLEGEQMEDSLQYHSEKLAIVFGLMSLPNQKTIHIRKNLRI 545

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           CGDCH+F KLVS++ +R  ++RD  R+HHF+ G CSC DYW
Sbjct: 546 CGDCHIFAKLVSQLENRVIVIRDPIRYHHFRGGVCSCGDYW 586



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 135/292 (46%), Gaps = 14/292 (4%)

Query: 38  MREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS 97
           M    +  +++T   L+  C+  G +      H      G +    + N L+ MYVK G 
Sbjct: 7   MHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGL 66

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
           +D  R LFD++P++ +++W  MIS Y+ + L    L+    M   GV P+  T+  VL +
Sbjct: 67  LDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRA 126

Query: 158 CAHLGAHSVGLEVEQ---QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTV 214
           C  L      L + Q    I   G  S+ F+ +ALI+ Y++ G    A  +F+ M    +
Sbjct: 127 CDGL------LNLRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDL 180

Query: 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFY 273
           V W +IIGG+  +  G+  + L+  M ++    D +   SVL AC+   L + G + + +
Sbjct: 181 VVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVH 240

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
            +K    L         ++D+  + G L +A  L   M+ E D   W  ++ 
Sbjct: 241 VLKYDQDLILN----NALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIA 288


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/562 (37%), Positives = 309/562 (54%), Gaps = 47/562 (8%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE   S   TV +  L+  +V +++  EA+ +F +MR  GV+ + VT++CL   C   
Sbjct: 72  VFDEIPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARL 131

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCG------------------------ 96
           G + +G   H   VK GL       N +M MY K G                        
Sbjct: 132 GDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVIL 191

Query: 97  -------SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK-SLGVCPDA 148
                   V  GR +FD++PE+  + W  MI+GY  +GL      L REM   L +  + 
Sbjct: 192 DGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNY 251

Query: 149 VTFVGVLSSCAHLGAHSVGLEVEQ-QIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
           VT   +L++C+  G   +G  V    ++      N  +  A+++MYA+CG +  A   F 
Sbjct: 252 VTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFK 311

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            MP++ VVSW A++ G  +HG G  A+ +F +M K   +PD   F SVLSACSH+GL D+
Sbjct: 312 KMPQRNVVSWNAMLSGLAMHGLGRAALDIFPQMFKEA-KPDDVTFTSVLSACSHSGLVDQ 370

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           G  YF  +++ YG+ P  EHY CMVDLLGRAG+L EA  L+  M + P+  V G+LLG+C
Sbjct: 371 GCFYFGNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSC 430

Query: 328 KIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPG 387
            IH  ++L E    ++++L+P NT Y++LLSN+Y+ A   +    +R ++++R +KK PG
Sbjct: 431 SIHGKLQLGEHLLQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPG 490

Query: 388 YSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL-----------ENLVQEHDG--TKRSD 434
            S + + G+VH F  GD++H +T E+Y MLD++              +Q   G  +   D
Sbjct: 491 MSSIHVGGQVHQFSAGDKSHPRTREVYNMLDEMIPRLRLAGYAPNTALQTFAGCDSLEDD 550

Query: 435 QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQF 494
               EE       HSEKLAI FG+I+T PG  + + KNLRIC DCH  IK+VSKI +R+ 
Sbjct: 551 LVEQEEKEQALFSHSEKLAICFGLISTGPGVPLHIFKNLRICQDCHSAIKIVSKIYNREI 610

Query: 495 IVRDATRFHHFKSGFCSCKDYW 516
           ++RD  RFH FK G CSC DYW
Sbjct: 611 VIRDRNRFHCFKEGSCSCCDYW 632



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 140/313 (44%), Gaps = 46/313 (14%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPE--KGLITWNAMISGYAQNGLATHVLELYREMKSLG 143
           N L+  Y  CG     RK+FD++P   K  + W  ++  + ++ ++   L ++ EM+  G
Sbjct: 54  NALLQFYASCGCAWQARKVFDEIPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCG 113

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
           V PD VT V +   CA LG   VG +    +   G G      NA+++MYA+ G + +AR
Sbjct: 114 VKPDEVTLVCLFGGCARLGDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEAR 173

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHG-EVAVQLFDEM---------------LKSGIRP 247
            +F  M  ++VVSWT I+ G  I   G      +FDEM               L SG+  
Sbjct: 174 RVFYEMKGQSVVSWTVILDGV-IRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQ 232

Query: 248 DGTAFV-----------------SVLSACSHAG-LTDKGLEYFYGMKNK---YGLQPGPE 286
           +  A V                 S+L+ACS +G L      + Y +K K     +  G  
Sbjct: 233 ESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVG-- 290

Query: 287 HYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK- 345
             T MVD+  + G+++ A +  + M  + +   W A+L    +H     A   F ++ K 
Sbjct: 291 --TAMVDMYAKCGRIHIAFKFFKKM-PQRNVVSWNAMLSGLAMHGLGRAALDIFPQMFKE 347

Query: 346 LEPMNTGYYVLLS 358
            +P +  +  +LS
Sbjct: 348 AKPDDVTFTSVLS 360


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/514 (37%), Positives = 295/514 (57%), Gaps = 40/514 (7%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N++I GY  N    EA+ LF +M+  G++ +  ++  +L  CV       G   H   V
Sbjct: 347 WNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIV 406

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT--WNAMISGYAQNGLATHV 132
           +  ++ +  +   L+ MY KCGS+DY  K++DQ  +K   T  WN++++GYA  GL    
Sbjct: 407 RNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKES 466

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
              + EM    +  D +T V +           V L V              L  AL++M
Sbjct: 467 FNHFLEMLESDIEYDVLTMVTI-----------VNLLV--------------LETALVDM 501

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++CG + KAR +FD M  K +VSW A+I GY  HG  + A+ L++EM K G+ P+   F
Sbjct: 502 YSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTF 561

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +++LSACSH GL ++GL  F  M+  Y ++   EHYTCMVDLLGRAG+L +A E +E M 
Sbjct: 562 LAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMP 621

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           +EP+ + WGALLGAC++HK++++  LA  ++ +L+P N G YV++SNIY+ A     +  
Sbjct: 622 IEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVED 681

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           +R MM+ + +KKDPG S++E+   + +F  G + H +T EIY   + L +L  +  G   
Sbjct: 682 IRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIY---NNLRHLTLQSKGLGY 738

Query: 433 -SDQKNSEEHLNDTEV---------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLF 482
             D     +++ D +          HSE+LA++ G+I+    + I V KNLRICGDCH  
Sbjct: 739 IPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDCHTA 798

Query: 483 IKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            K +SKI  R+ I RD  RFHHF++G CSC DYW
Sbjct: 799 TKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 832



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 139/286 (48%), Gaps = 7/286 (2%)

Query: 44  EINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVD---Y 100
           ++N +    L+  C+D      G   H   +  G + D  +   ++ +Y + G +D   Y
Sbjct: 68  DVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCY 127

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160
            RKLF+++PE+ L  WN MI  YA+         ++  M  +GVCPD  TF   L  C  
Sbjct: 128 ARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGA 187

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           L +   G +V  ++ A GF  + F+ NALI+MYA+C + +    +FD M  +  V+W +I
Sbjct: 188 LRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSI 247

Query: 221 IGGYGIHGHGEVAVQLFDEMLKS--GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278
           I      GH   A+ LF  M +S  GI+PD   F ++L+ C++    ++G +  +    +
Sbjct: 248 ISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQ-IHAHLIR 306

Query: 279 YGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
             +       T +V +    G+LN A E+   M  E +   W +++
Sbjct: 307 ANITKNIIVETELVHMYSECGRLNYAKEIFNRM-AERNAYSWNSMI 351



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM-CCHC 71
           V +NA+ISGY  +    EA+ L+ +M ++G+  N VT L +L  C   G +  G+     
Sbjct: 524 VSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTS 583

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP-EKGLITWNAMI 120
           +   + ++       C++ +  + G ++  ++  +++P E  + TW A++
Sbjct: 584 MQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALL 633


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/520 (37%), Positives = 293/520 (56%), Gaps = 7/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+    +   V +  LI+GY  N + +EA+ L   M       N  T   LL      
Sbjct: 14  VFDK--MPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGAC 71

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G   +G   H + VK+  D D  VG+ L+ MY +C  +D    +FD++  K  ++WNA+I
Sbjct: 72  GGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALI 131

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +G+A+       L  + EM+  G      T+  + S+ A +GA   G  V   +  +G  
Sbjct: 132 AGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQK 191

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
              F+ N ++ MYA+ G++  AR +FD M ++ +V+W  ++     +G G+ AV  F+E+
Sbjct: 192 LTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEI 251

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            K GI+ +   F+SVL+ACSH GL  +G  YF  MK+ Y +QP  +HY   VDLLGRAG 
Sbjct: 252 RKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKD-YNVQPEIDHYVSFVDLLGRAGL 310

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L EAL  +  M +EP  AVWGALLGAC++HKN ++ + A   V +L+P +TG  VLL NI
Sbjct: 311 LKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNI 370

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+     +   RVR MM+   +KK+P  S+V+++  VH+F+  D  H ++ +IYRM +++
Sbjct: 371 YASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEI 430

Query: 421 ENLVQEHDGTKRSDQK----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
              +++      +       N +E     + HSEK+A+AF +IN   G  I +MKN+RIC
Sbjct: 431 NMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGASIRIMKNIRIC 490

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           GDCH   K VSK+  R+ +VRD  RFHHF  G CSC DYW
Sbjct: 491 GDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 530



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 10/252 (3%)

Query: 91  MYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVT 150
           MY KCG+V   R +FD++P + +++W  +I+GYAQN +    + L  +M      P+  T
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
           F  +L +    G  S+G ++        +  + ++ +AL++MYARC  +  A  +FD + 
Sbjct: 61  FTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLV 120

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270
            K  VSW A+I G+     GE  +  F EM ++G       + S+ SA +  G  ++G  
Sbjct: 121 SKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQG-R 179

Query: 271 YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           + +    K G +        M+ +  ++G + +A ++ + M  + D   W  +L A    
Sbjct: 180 WVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRM-DKRDLVTWNTMLTA---- 234

Query: 331 KNVELAELAFGK 342
               LA+   GK
Sbjct: 235 ----LAQYGLGK 242


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/526 (39%), Positives = 303/526 (57%), Gaps = 16/526 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +     V + A+IS Y       EA++LF +M     E N  T   +L  C   
Sbjct: 119 MFDEMPQRN--VVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGS 176

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
                G   H I +K   +    VG+ L+ MY K G +     +F  +PE+ ++   A+I
Sbjct: 177 LGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAII 236

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGYAQ GL    L+L+R+++  G+  ++VT+  VL++ + L A + G +V   +  +G  
Sbjct: 237 SGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQY 296

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S   L N+LI+MY++CGN+  AR IFD MP +T +SW A++ GY  HG     ++LF  M
Sbjct: 297 SYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLM 356

Query: 241 LKSG-IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN-KYGLQPGPEHYTCMVDLLGRA 298
            +   ++PD   +++VLS CSH  L D GLE FY M N K G++P   HY C+VDLLGRA
Sbjct: 357 REENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRA 416

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           G++ EA + I+ M   P  A+WG+LLG+C++H +VE+  +   K+++LEP N G YV+LS
Sbjct: 417 GRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILS 476

Query: 359 NIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD 418
           N+Y+ A   + +  +R +M+E+ + K+PG S+VEL   VH F   D  H +  E+   + 
Sbjct: 477 NLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVANKVK 536

Query: 419 KLENLVQEHDGTKRS--------DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVM 470
           +L    +E DG            D++  E+ L     HSEKLA+AFG+I T  GT I V+
Sbjct: 537 ELSIKFKE-DGYVPDLSCVLYDVDEEQKEKVLLG---HSEKLALAFGLIATPEGTTIRVI 592

Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KNLRIC DCH F K VS++  R  I+RD  RFH+   G CSC DYW
Sbjct: 593 KNLRICVDCHSFAKFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 638



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 143/282 (50%), Gaps = 21/282 (7%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L+ +Y KC  +   R +FD++P++ +++W AMIS Y+Q G A   L L+ EM      P+
Sbjct: 103 LIVLYNKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPN 162

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQA----NGFGSNPFLNNALINMYARCGNLKKAR 203
             TF  +L+SC      S+G E  +QI +      + S+ F+ ++L++MYA+ G +  A 
Sbjct: 163 HFTFATILTSC----YGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAH 218

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG 263
            +F  +P + VV+ TAII GY   G  E A++LF ++   G+  +   + SVL+A S   
Sbjct: 219 GVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLA 278

Query: 264 LTDKGLEYFYGMKNKYGLQPGPEHY----TCMVDLLGRAGQLNEALELIESMLVEPDGAV 319
             + G +      + + L+ G   Y      ++D+  + G +  A  + +SM  E     
Sbjct: 279 ALNHGKQV-----HSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSM-PERTCIS 332

Query: 320 WGALL-GACKIHKNVELAEL--AFGKVIKLEPMNTGYYVLLS 358
           W A+L G  K     E+ EL     +  K++P +  Y  +LS
Sbjct: 333 WNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLS 374



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 3/129 (2%)

Query: 134 ELYREMKSLGVCPDAVTFVG---VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
           +L   +  + +    V F G   +L+ C    A   G  V   +    +  + +L   LI
Sbjct: 45  QLKEALLQMAILGREVKFEGYDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLI 104

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
            +Y +C  L  AR +FD MP++ VVSWTA+I  Y   G    A+ LF EML+S   P+  
Sbjct: 105 VLYNKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHF 164

Query: 251 AFVSVLSAC 259
            F ++L++C
Sbjct: 165 TFATILTSC 173


>gi|125540774|gb|EAY87169.1| hypothetical protein OsI_08570 [Oryza sativa Indica Group]
          Length = 613

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/513 (37%), Positives = 291/513 (56%), Gaps = 11/513 (2%)

Query: 15  YNALISGYVLNSLV-----SEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCC 69
           YN L+ GYV          + A+ LF  M + GVE +S T   +   C   G L  G   
Sbjct: 101 YNTLMRGYVAGGGGGGRDPAAALRLFVDMVDDGVEPDSYTFPFVFKACAQLGALQEGRQL 160

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP--EKGLITWNAMISGYAQNG 127
               VK G   D    N L++ Y KCG  D  R+ F+Q+   E+   +W+A+++ Y + G
Sbjct: 161 QGHLVKLGFQRDEHSQNSLISFYGKCGEADLARRAFEQMEDDEQTTASWSALLAAYTRAG 220

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
                +E +  M   G  PD  + V  LS+CAHLGAH VG  +   +  N    N F++ 
Sbjct: 221 RWAECVESFGAMVRAGWRPDESSMVSALSACAHLGAHDVGRSIHCALLRNTARLNTFMST 280

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           +L++MYA+CG ++ A A+FD M  K   +++A++ G  +HG G  A+++FD M++ G RP
Sbjct: 281 SLVDMYAKCGCIENAAAVFDAMDDKNAWTYSAMVSGLALHGDGRKALEVFDAMVREGHRP 340

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           D   +V VL+ACS AGL ++GL  F  M+ ++ L P  +HY CMVDL+ RAG+L++A  L
Sbjct: 341 DAAVYVGVLNACSRAGLLEEGLRCFDRMRLEHKLTPNAQHYGCMVDLMARAGRLDDARAL 400

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNL 367
           I +M   P    W +LL AC+IH N+ELAE A  ++ +L   N G Y++LS++++ A N 
Sbjct: 401 IGNMPTGPTDTAWRSLLNACRIHGNLELAERALQELERLGATNAGDYIILSDMHARAHNR 460

Query: 368 DGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ-- 425
           D     R    +R L + PGYS VE+ G  H F+  DR+H +  +IY ML ++E  ++  
Sbjct: 461 DAAAARRTEAVDRGLAQAPGYSAVEVHGATHRFVSQDRSHPRADDIYEMLHQMEWQLRFE 520

Query: 426 --EHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFI 483
               D ++ +     EE       HS+KLA+AFG+++T  G  + V+ NLR+  +CH + 
Sbjct: 521 GYTPDTSELALDAGEEEKRRVVAAHSQKLAMAFGLLSTPEGAPVRVVTNLRMSKECHAYS 580

Query: 484 KLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            L+S+I  R+ +VRD  RFH FK G CSC +YW
Sbjct: 581 ALISEIFGREIVVRDRNRFHRFKRGACSCGNYW 613



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 118/246 (47%), Gaps = 2/246 (0%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
            F++       T  ++AL++ Y      +E V  FG M   G   +  +M+  L  C   
Sbjct: 195 AFEQMEDDEQTTASWSALLAAYTRAGRWAECVESFGAMVRAGWRPDESSMVSALSACAHL 254

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G   +G   HC  ++    L+  +   L+ MY KCG ++    +FD + +K   T++AM+
Sbjct: 255 GAHDVGRSIHCALLRNTARLNTFMSTSLVDMYAKCGCIENAAAVFDAMDDKNAWTYSAMV 314

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ-ANGF 179
           SG A +G     LE++  M   G  PDA  +VGVL++C+  G    GL    +++  +  
Sbjct: 315 SGLALHGDGRKALEVFDAMVREGHRPDAAVYVGVLNACSRAGLLEEGLRCFDRMRLEHKL 374

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPR-KTVVSWTAIIGGYGIHGHGEVAVQLFD 238
             N      ++++ AR G L  ARA+   MP   T  +W +++    IHG+ E+A +   
Sbjct: 375 TPNAQHYGCMVDLMARAGRLDDARALIGNMPTGPTDTAWRSLLNACRIHGNLELAERALQ 434

Query: 239 EMLKSG 244
           E+ + G
Sbjct: 435 ELERLG 440



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 137/321 (42%), Gaps = 54/321 (16%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL-----ATHVLELYREMKSLGVCPDAVT 150
           GS+ Y   +F  + +     +N ++ GY   G          L L+ +M   GV PD+ T
Sbjct: 81  GSMAYAASIFAALDDPEAFDYNTLMRGYVAGGGGGGRDPAAALRLFVDMVDDGVEPDSYT 140

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
           F  V  +CA LGA   G +++  +   GF  +    N+LI+ Y +CG    AR  F+ M 
Sbjct: 141 FPFVFKACAQLGALQEGRQLQGHLVKLGFQRDEHSQNSLISFYGKCGEADLARRAFEQME 200

Query: 211 --RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
              +T  SW+A++  Y   G     V+ F  M+++G RPD ++ VS LSAC+H G  D G
Sbjct: 201 DDEQTTASWSALLAAYTRAGRWAECVESFGAMVRAGWRPDESSMVSALSACAHLGAHDVG 260

Query: 269 LE-----------------------------------YFYGMKNKYGLQPGPEHYTCMVD 293
                                                 F  M +K         Y+ MV 
Sbjct: 261 RSIHCALLRNTARLNTFMSTSLVDMYAKCGCIENAAAVFDAMDDKNAWT-----YSAMVS 315

Query: 294 LLGRAGQLNEALELIESMLVE---PDGAVWGALLGACKIHKNVELAELAFGKVI---KLE 347
            L   G   +ALE+ ++M+ E   PD AV+  +L AC     +E     F ++    KL 
Sbjct: 316 GLALHGDGRKALEVFDAMVREGHRPDAAVYVGVLNACSRAGLLEEGLRCFDRMRLEHKLT 375

Query: 348 PMNTGYYVLLSNIYSEARNLD 368
           P N  +Y  + ++ + A  LD
Sbjct: 376 P-NAQHYGCMVDLMARAGRLD 395


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/546 (37%), Positives = 309/546 (56%), Gaps = 46/546 (8%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVD 59
           VFD   + T     +NA+I+GYV N    EA+ LF +M  E G+  NSVT+  +LP CV 
Sbjct: 345 VFDGMFRRT--IAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVR 402

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
                     H   VK+G + D  V N LM MY + G ++  R +F  +  K +++WN M
Sbjct: 403 CESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTM 462

Query: 120 ISGYA---------------QNGLATH---VLELYREMKSLGVCPDAVTFVGVLSSCAHL 161
           I+GY                Q G A H     + Y + K+  + P++VT + VL  CA L
Sbjct: 463 ITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAAL 522

Query: 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
            A   G E+           +  + +AL++MYA+CG L  +R +F+ M  + V++W  +I
Sbjct: 523 AALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLI 582

Query: 222 GGYGIHGHGEVAVQLFDEMLKSG-----IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
             YG+HG GE A++LF  M++ G     IRP+   ++++ ++ SH+G+ D+GL  FY MK
Sbjct: 583 MAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMK 642

Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGA-VWGALLGACKIHKNVEL 335
            K+G++P  +HY C+VDLLGR+GQ+ EA  LI++M         W +LLGACKIH+N+E+
Sbjct: 643 AKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSLLGACKIHQNLEI 702

Query: 336 AELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKG 395
            E+A   +  L+P    Y    S +  +             M+E+ ++K+PG S++E   
Sbjct: 703 GEIAAKNLFVLDPNVLDYGTKQSMLGRK-------------MKEKGVRKEPGCSWIEHGD 749

Query: 396 RVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQ---KNSEEHLNDTEV--HSE 450
            VH F+ GD +H Q+ E++  L+ L +L  + +G          N  E   +T +  HSE
Sbjct: 750 EVHKFLAGDVSHPQSKEVHEYLETL-SLRMKKEGYVPDTSCVLHNVGEEEKETMLCGHSE 808

Query: 451 KLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFC 510
           +LAIAFG++NTSPGT I V KNLR+C DCH+  K +SKIVDR+ I+RD  RFHHF++G C
Sbjct: 809 RLAIAFGLLNTSPGTTIRVAKNLRVCNDCHVATKFISKIVDREIILRDVRRFHHFRNGTC 868

Query: 511 SCKDYW 516
           SC DYW
Sbjct: 869 SCGDYW 874



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 150/328 (45%), Gaps = 10/328 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD- 59
           VFDE        V +N++I+          AV LF  M  + V   S T++ +   C + 
Sbjct: 142 VFDEITNRD--DVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTSFTLVSVAHACSNL 199

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              L LG   H   ++ G D      N L+TMY K G V   + LFD   +K L++WN +
Sbjct: 200 INGLLLGKQVHAFVLRNG-DWRTFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTI 258

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI-QANG 178
           IS  +QN      L     M   GV P+ VT   VL +C+HL     G E+   +   N 
Sbjct: 259 ISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNND 318

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
              N F+  AL++MY  C   +K R +FDGM R+T+  W A+I GY  +     A++LF 
Sbjct: 319 LIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFV 378

Query: 239 EML-KSGIRPDGTAFVSVLSACSH-AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           EM+ + G+ P+     SVL AC       DK  E  +    K+G +        ++D+  
Sbjct: 379 EMVFELGLSPNSVTLSSVLPACVRCESFLDK--EGIHSCVVKWGFEKDKYVQNALMDMYS 436

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALL 324
           R G++  A  +  SM    D   W  ++
Sbjct: 437 RMGRIEIARSIFGSM-NRKDIVSWNTMI 463



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 82/241 (34%), Positives = 123/241 (51%), Gaps = 8/241 (3%)

Query: 25  NSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSV 84
           +S   +A+S +  M   GV  ++     +L        L LG   H    KFG  L  +V
Sbjct: 63  SSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAV 122

Query: 85  GNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISG---YAQNGLATHVLELYREMKS 141
            N L+ MY KCG +D  R++FD++  +  ++WN+MI+    + +  LA H   L+R M  
Sbjct: 123 PNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVH---LFRLMLL 179

Query: 142 LGVCPDAVTFVGVLSSCAHL-GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
             V P + T V V  +C++L     +G +V   +  NG     F NNAL+ MYA+ G + 
Sbjct: 180 ENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNG-DWRTFTNNALVTMYAKLGRVY 238

Query: 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
           +A+ +FD    K +VSW  II     +   E A+     ML+SG+RP+G    SVL ACS
Sbjct: 239 EAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACS 298

Query: 261 H 261
           H
Sbjct: 299 H 299



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 1/147 (0%)

Query: 116 WNAMISGYAQNGLATH-VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
           W + +    Q+    H  +  Y  M + GV PD   F  VL + A +   ++G ++   +
Sbjct: 52  WVSHLRSQTQSSSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHV 111

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
              G      + N+L+NMY +CG++  AR +FD +  +  VSW ++I         E+AV
Sbjct: 112 FKFGQALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAV 171

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSH 261
            LF  ML   + P     VSV  ACS+
Sbjct: 172 HLFRLMLLENVGPTSFTLVSVAHACSN 198


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/520 (37%), Positives = 293/520 (56%), Gaps = 7/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+    +   V +  LI+GY  N + +EA+ L   M       N  T   LL      
Sbjct: 117 VFDK--MPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGAC 174

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G   +G   H + VK+  D D  VG+ L+ MY +C  +D    +FD++  K  ++WNA+I
Sbjct: 175 GGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALI 234

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +G+A+       L  + EM+  G      T+  + S+ A +GA   G  V   +  +G  
Sbjct: 235 AGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQK 294

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
              F+ N ++ MYA+ G++  AR +FD M ++ +V+W  ++     +G G+ AV  F+E+
Sbjct: 295 LTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEI 354

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            K GI+ +   F+SVL+ACSH GL  +G  YF  MK+ Y +QP  +HY   VDLLGRAG 
Sbjct: 355 RKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKD-YNVQPEIDHYVSFVDLLGRAGL 413

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L EAL  +  M +EP  AVWGALLGAC++HKN ++ + A   V +L+P +TG  VLL NI
Sbjct: 414 LKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNI 473

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+     +   RVR MM+   +KK+P  S+V+++  VH+F+  D  H ++ +IYRM +++
Sbjct: 474 YASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEI 533

Query: 421 ENLVQEHDGTKRSDQK----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
              +++      +       N +E     + HSEK+A+AF +IN   G  I +MKN+RIC
Sbjct: 534 NMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGASIRIMKNIRIC 593

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           GDCH   K VSK+  R+ +VRD  RFHHF  G CSC DYW
Sbjct: 594 GDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 633



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 125/257 (48%), Gaps = 10/257 (3%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+ MY KCG+V   R +FD++P + +++W  +I+GYAQN +    + L  +M      
Sbjct: 99  NSLIHMYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFR 158

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P+  TF  +L +    G  S+G ++        +  + ++ +AL++MYARC  +  A  +
Sbjct: 159 PNGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMV 218

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           FD +  K  VSW A+I G+     GE  +  F EM ++G       + S+ SA +  G  
Sbjct: 219 FDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGAL 278

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           ++G  + +    K G +        M+ +  ++G + +A ++ + M  + D   W  +L 
Sbjct: 279 EQG-RWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRM-DKRDLVTWNTMLT 336

Query: 326 ACKIHKNVELAELAFGK 342
           A        LA+   GK
Sbjct: 337 A--------LAQYGLGK 345



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 95/200 (47%), Gaps = 2/200 (1%)

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
           + P    +  ++++CA     +    +   +  +    + FL N+LI+MY +CG +  AR
Sbjct: 56  LAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDAR 115

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG 263
            +FD MP + VVSWT +I GY  +     A+ L  +ML++  RP+G  F S+L A    G
Sbjct: 116 HVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACG 175

Query: 264 LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGAL 323
               G E  + +  KY         + ++D+  R  Q++ A+ ++   LV  +   W AL
Sbjct: 176 GCSIG-EQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAI-MVFDRLVSKNEVSWNAL 233

Query: 324 LGACKIHKNVELAELAFGKV 343
           +       + E   + F ++
Sbjct: 234 IAGFARKADGETTLMKFAEM 253


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/548 (37%), Positives = 305/548 (55%), Gaps = 49/548 (8%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N ++SG+  +    EAV +F KM   G   + VT+  +LP   D   L +G   H  
Sbjct: 218 VSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGY 277

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFD-------------------------- 106
            +K GL  D  V + ++ MY K G V    KLFD                          
Sbjct: 278 VIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKA 337

Query: 107 ---------QVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
                    Q  E  +++W ++I+G AQNG     LEL+REM+  GV P+ VT   +L +
Sbjct: 338 LEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPA 397

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
           C ++ A   G              +  + +ALI+MYA+CG +K ++ +F+ MP K +V W
Sbjct: 398 CGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCW 457

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
            +++ GY +HG  +  + +F+ ++++ ++PD  +F S+LSAC   GLTD+G +YF  M  
Sbjct: 458 NSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSE 517

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
           +YG++P  EHY+CMV+LLGRAG+L EA +LI+ +  EPD  VWGALL +C++  NV+LAE
Sbjct: 518 EYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAE 577

Query: 338 LAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRV 397
           +A  K+  LEP N G YVL+SNIY+       +  +R  M    LKK+PG S++++K +V
Sbjct: 578 IAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNKV 637

Query: 398 HLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEV---------H 448
           +  +  D++H Q  +I   +D++   ++     K   + N +  L D E          H
Sbjct: 638 YTLLACDKSHPQIDQITEKMDEISEEMR-----KSGHRPNLDFALQDVEEQEQEQMLWGH 692

Query: 449 SEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSG 508
           SEKLA+ FG++NT  GT + V+KNLRICGDCH  IK +S    R+  +RD  RFHHFK G
Sbjct: 693 SEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDG 752

Query: 509 FCSCKDYW 516
            CSC D+W
Sbjct: 753 ICSCGDFW 760



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 162/322 (50%), Gaps = 16/322 (4%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +++LI       L S+++ +F +M   G+  ++  +  L  +C +      G   HC+  
Sbjct: 84  FSSLIYALTKAKLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVAC 143

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             GLD+D  V   L  MY++CG +   RK+FD++ EK ++T +A++ GYA+ G    V+ 
Sbjct: 144 VSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVR 203

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           +  EM+  G+ P+ V++ G+LS     G H   + + Q++   GF  +    ++++    
Sbjct: 204 ILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVG 263

Query: 195 RCGNLKKARAIFDGMPRKTVVS----WTAIIGGYGIHGHGEVAVQLFD--EMLKSGIRPD 248
              NL   R I   + ++ ++      +A++  YG  GH    ++LFD  EM+++G+   
Sbjct: 264 DSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGV--- 320

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
             A+++ L   S  GL DK LE F G+  +  ++     +T ++    + G+  EALEL 
Sbjct: 321 CNAYITGL---SRNGLVDKALEMF-GLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELF 376

Query: 309 ESML---VEPDGAVWGALLGAC 327
             M    V+P+     ++L AC
Sbjct: 377 REMQVAGVKPNRVTIPSMLPAC 398



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 107/233 (45%), Gaps = 1/233 (0%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   +K G   D  +   L+  Y      +    +   +P+  + +++++I    +  L 
Sbjct: 38  HARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKLF 97

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
           +  + ++  M S G+ PD      +   CA L A   G ++      +G   + F+  +L
Sbjct: 98  SQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSL 157

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
            +MY RCG +  AR +FD M  K VV+ +A++ GY   G  E  V++  EM KSGI P+ 
Sbjct: 158 FHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNI 217

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
            ++  +LS  + +G   + +  F  M +  G  P     + ++  +G +  LN
Sbjct: 218 VSWNGILSGFNRSGYHKEAVIMFQKM-HHLGFCPDQVTVSSVLPSVGDSENLN 269


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/523 (37%), Positives = 297/523 (56%), Gaps = 13/523 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPIC--- 57
           VFD+  K     V + +LI+GY  N + +EA+ L   M +   + N  T   LL      
Sbjct: 108 VFDKMRKKD--MVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAY 165

Query: 58  VDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWN 117
            D G   +G   H + VK     D  VG+ L+ MY +CG +D    +FD++  K  ++WN
Sbjct: 166 ADSG---IGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWN 222

Query: 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
           A+ISG+A+ G     L ++ EM+  G      T+  + S  A +GA   G  V   +  +
Sbjct: 223 ALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKS 282

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
                 F+ N +++MYA+ G++  AR +F+ +  K +V+W +++  +  +G G+ AV  F
Sbjct: 283 RQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHF 342

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
           +EM KSGI  +   F+ +L+ACSH GL  +G  YF  M  +Y L+P  EHY  +VDLLGR
Sbjct: 343 EEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYF-DMIKEYNLEPEIEHYVTVVDLLGR 401

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
           AG LN AL  I  M +EP  AVWGALL AC++HKN ++ + A   V +L+P ++G  VLL
Sbjct: 402 AGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLL 461

Query: 358 SNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML 417
            NIY+   + D   RVR MM+   +KK+P  S+VE+   VH+F+  D  H +  EIY+M 
Sbjct: 462 YNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIGNSVHMFVANDDTHPRAEEIYKMW 521

Query: 418 DKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
           D++   +++       D      + +E   + + HSEK+A+AF +I    G  I +MKN+
Sbjct: 522 DEISMKIRKEGYVPDMDYVLLHVDEQEREANLQYHSEKIALAFALIQMPAGATIRIMKNI 581

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           RICGDCH   K +SK+ +R+ +VRD  RFHHF +G CSC DYW
Sbjct: 582 RICGDCHSAFKYISKVFEREIVVRDTNRFHHFSNGSCSCGDYW 624



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 126/246 (51%), Gaps = 2/246 (0%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140
           D  + N L+ +Y KCGSV    K+FD++ +K +++W ++I+GYAQN +    + L   M 
Sbjct: 85  DAFLDNSLIHLYCKCGSVVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGML 144

Query: 141 SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
                P+  TF  +L +        +G ++        +  + ++ +AL++MYARCG + 
Sbjct: 145 KGRFKPNGFTFASLLKAAGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMD 204

Query: 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
            A A+FD +  K  VSW A+I G+   G GE A+ +F EM ++G       + S+ S  +
Sbjct: 205 MATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLA 264

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320
             G  ++G ++ +    K   +        M+D+  ++G + +A ++ E +L   D   W
Sbjct: 265 GIGALEQG-KWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVL-NKDLVTW 322

Query: 321 GALLGA 326
            ++L A
Sbjct: 323 NSMLTA 328



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 104/220 (47%), Gaps = 6/220 (2%)

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
           + P    +   +++CA         ++   + ++ F  + FL+N+LI++Y +CG++ +A 
Sbjct: 47  LAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAH 106

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG 263
            +FD M +K +VSWT++I GY  +     A+ L   MLK   +P+G  F S+L A     
Sbjct: 107 KVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAA--GA 164

Query: 264 LTDKGL-EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGA 322
             D G+    + +  K          + ++D+  R G+++ A  + +  L   +G  W A
Sbjct: 165 YADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDK-LDSKNGVSWNA 223

Query: 323 LLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNI 360
           L+       + E A + F ++ +   E  +  Y  + S +
Sbjct: 224 LISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGL 263


>gi|302765332|ref|XP_002966087.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
 gi|300166901|gb|EFJ33507.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
          Length = 449

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/435 (42%), Positives = 257/435 (59%), Gaps = 4/435 (0%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+ MYV+CGS++  RK+FD +      +W  MI+   +N      LEL+  M   G+ 
Sbjct: 15  NALLNMYVRCGSLEEARKVFDAMDHPDAFSWTNMITACTENCELLEALELFHRMNLEGIP 74

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P +VT   VL++CA  GA  VG ++  ++ A+GF S+     AL++MYA+CG+L+ +  +
Sbjct: 75  PTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKV 134

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           F  M  +  VSWTA+I     HG G+ A++LF EM   G+  D T F+ VL ACSHAGL 
Sbjct: 135 FTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLI 194

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
            + LE+F+ M   Y + P   HY   +D +GRAG+L +A ELI SM   P+   W  LL 
Sbjct: 195 KESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETVTWKTLLN 254

Query: 326 ACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKD 385
           AC+IH   E A      + KL P ++  Y LL N+Y+        MRVR  M +R LKK 
Sbjct: 255 ACRIHSQAERATKVAELLAKLAPEDSMAYTLLGNVYAATERYGDQMRVRKSMTDRGLKKV 314

Query: 386 PGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQ----KNSEEH 441
           PG S++E+K +VH F+ GDR H    EI   L+KL   ++E      +       N EE 
Sbjct: 315 PGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLHAVNEEEK 374

Query: 442 LNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATR 501
                +HSEKLAIAFG+I T PGT ++++KNLR+C DCH   K+++KI+ R+ +VRD  R
Sbjct: 375 EQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRIVVRDTHR 434

Query: 502 FHHFKSGFCSCKDYW 516
           FHHF+ G CSCKDYW
Sbjct: 435 FHHFEDGQCSCKDYW 449



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 136/313 (43%), Gaps = 24/313 (7%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +  +I+    N  + EA+ LF +M  +G+   SVT+  +L  C   G L +G   H    
Sbjct: 45  WTNMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLD 104

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             G          L+ MY KCGS++   K+F  +  +  ++W AMI+  AQ+G     LE
Sbjct: 105 ASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALE 164

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLE-VEQQIQANGFGSNPFLNNALINMY 193
           L++EM   G+  DA TF+ VL +C+H G     LE     ++              ++  
Sbjct: 165 LFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTI 224

Query: 194 ARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
            R G L+ A  +   MP     V+W  ++    IH   E A ++  E+L      D  A+
Sbjct: 225 GRAGRLQDAEELIHSMPFHPETVTWKTLLNACRIHSQAERATKVA-ELLAKLAPEDSMAY 283

Query: 253 V---SVLSACSHAG--------LTDKGL-----EYFYGMKNKY-----GLQPGPEHYTCM 291
               +V +A    G        +TD+GL     + F  +KNK      G +  P     +
Sbjct: 284 TLLGNVYAATERYGDQMRVRKSMTDRGLKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEIL 343

Query: 292 VDLLGRAGQLNEA 304
           ++L    G++ EA
Sbjct: 344 LELEKLGGRMREA 356



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 80/170 (47%), Gaps = 3/170 (1%)

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            SN  L NAL+NMY RCG+L++AR +FD M      SWT +I     +     A++LF  
Sbjct: 8   SSNAILENALLNMYVRCGSLEEARKVFDAMDHPDAFSWTNMITACTENCELLEALELFHR 67

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M   GI P      SVL+AC+ +G    G +  +   +  G        T ++D+  + G
Sbjct: 68  MNLEGIPPTSVTLASVLNACACSGALKVG-KQIHSRLDASGFHSSVLAQTALLDMYAKCG 126

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPM 349
            L  + ++  +M    +   W A++ A   H   + A L   K + LE M
Sbjct: 127 SLECSSKVFTAMETR-NSVSWTAMIAALAQHGQGDEA-LELFKEMNLEGM 174


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/505 (39%), Positives = 293/505 (58%), Gaps = 5/505 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+ISGY    +  +A+  +  M  +G+  + +T+  +L  C     L +GM  H +
Sbjct: 375 VSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEV 434

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             + GL     V N L+ MY KC  +D   ++F    EK +++W ++I G   N      
Sbjct: 435 AKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEA 494

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L  +REM    + P++VT V VLS+CA +GA + G E+       G   + F+ NA+++M
Sbjct: 495 LFFFREMIR-RLKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDM 553

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y RCG ++ A   F  +  + V SW  ++ GY   G G  A +LF  M++S + P+   F
Sbjct: 554 YVRCGRMEYAWKQFFSVDHE-VTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTF 612

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +S+L ACS +G+  +GLEYF  MK KY + P  +HY C+VDLLGR+G+L EA E I+ M 
Sbjct: 613 ISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMP 672

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           ++PD AVWGALL +C+IH +VEL ELA   + + +  + GYY+LLSN+Y++    D +  
Sbjct: 673 MKPDPAVWGALLNSCRIHHHVELGELAAENIFQDDTTSVGYYILLSNLYADNGKWDKVAE 732

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH--DGT 430
           VR MMR+  L  DPG S+VE+KG VH F+  D  H Q  EI  +L++    ++E   +G 
Sbjct: 733 VRKMMRQNGLIVDPGCSWVEVKGTVHAFLSSDNFHPQIKEINALLERFYKKMKEAGVEGP 792

Query: 431 KRSDQKNSEEHLNDTEV-HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKI 489
           + S     E    D    HSE+LAI FG+IN+ PG  I V KNL +C  CH  +K +S+ 
Sbjct: 793 ESSHMDIMEASKADIFCGHSERLAIVFGLINSGPGMPIWVTKNLYMCQSCHNIVKFISRE 852

Query: 490 VDRQFIVRDATRFHHFKSGFCSCKD 514
           V R+  VRDA +FHHFK G CSC D
Sbjct: 853 VRREISVRDAEQFHHFKGGICSCTD 877



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 178/345 (51%), Gaps = 3/345 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N L+ GY    L  EA+ L+ +M   GV+ +  T  C+L  C     L  G   H   +
Sbjct: 175 WNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVI 234

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           ++G + D  V N L+TMYVKCG V+  R +FD++P +  I+WNAMISGY +NG+    L 
Sbjct: 235 RYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLR 294

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+  M    V PD +T   V+++C  LG   +G ++   +    FG +P ++N+LI MY+
Sbjct: 295 LFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYS 354

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
             G +++A  +F     + +VSWTA+I GY      + A++ +  M   GI PD      
Sbjct: 355 SVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAI 414

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VLSACS     D G+      K K GL         ++D+  +   +++ALE+  S L E
Sbjct: 415 VLSACSCLCNLDMGMNLHEVAKQK-GLVSYSIVANSLIDMYAKCKCIDKALEIFHSTL-E 472

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVI-KLEPMNTGYYVLLS 358
            +   W +++   +I+     A   F ++I +L+P +     +LS
Sbjct: 473 KNIVSWTSIILGLRINNRCFEALFFFREMIRRLKPNSVTLVCVLS 517



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/324 (30%), Positives = 162/324 (50%), Gaps = 6/324 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+      ++  +NA+ISGY  N +  E + LFG M +  V+ + +TM  ++  C   
Sbjct: 264 VFDKMPNRDRIS--WNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELL 321

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G   LG   H   ++     D S+ N L+ MY   G ++    +F +   + L++W AMI
Sbjct: 322 GDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMI 381

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SGY    +    LE Y+ M++ G+ PD +T   VLS+C+ L    +G+ + +  +  G  
Sbjct: 382 SGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLV 441

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S   + N+LI+MYA+C  + KA  IF     K +VSWT+II G  I+     A+  F EM
Sbjct: 442 SYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREM 501

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           ++  ++P+    V VLSAC+  G    G E  +    + G+         ++D+  R G+
Sbjct: 502 IRR-LKPNSVTLVCVLSACARIGALTCGKE-IHAHALRTGVSFDGFMPNAILDMYVRCGR 559

Query: 301 LNEALELIESMLVEPDGAVWGALL 324
           +  A +   S  V+ +   W  LL
Sbjct: 560 MEYAWKQFFS--VDHEVTSWNILL 581



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 130/247 (52%), Gaps = 4/247 (1%)

Query: 80  LDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM 139
           L   +GN L++M+V+ G++     +F ++ ++ L +WN ++ GYA+ GL    L+LY  M
Sbjct: 139 LSLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRM 198

Query: 140 KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNL 199
             +GV PD  TF  VL +C  +     G E+   +   GF S+  + NALI MY +CG++
Sbjct: 199 LWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDV 258

Query: 200 KKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC 259
             AR +FD MP +  +SW A+I GY  +G     ++LF  M+K  + PD     SV++AC
Sbjct: 259 NTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITAC 318

Query: 260 SHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGA 318
              G    G + + Y ++ ++G  P    +  ++ +    G + EA E + S     D  
Sbjct: 319 ELLGDDRLGRQIHGYVLRTEFGRDPSI--HNSLIPMYSSVGLIEEA-ETVFSRTECRDLV 375

Query: 319 VWGALLG 325
            W A++ 
Sbjct: 376 SWTAMIS 382



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 2/187 (1%)

Query: 139 MKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGN 198
           M  L +  +   +V ++  C    A   G  V   +  +    +  L NAL++M+ R GN
Sbjct: 97  MHELRIPVEDDAYVALIRLCEWKRARKEGSRVYSYVSISMSHLSLQLGNALLSMFVRFGN 156

Query: 199 LKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSA 258
           L  A  +F  M ++ + SW  ++GGY   G  + A+ L+  ML  G++PD   F  VL  
Sbjct: 157 LVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRT 216

Query: 259 CSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGA 318
           C       +G E    +  +YG +   +    ++ +  + G +N A  L+   +   D  
Sbjct: 217 CGGMPNLVRGREIHVHVI-RYGFESDVDVVNALITMYVKCGDVNTA-RLVFDKMPNRDRI 274

Query: 319 VWGALLG 325
            W A++ 
Sbjct: 275 SWNAMIS 281


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/511 (37%), Positives = 293/511 (57%), Gaps = 8/511 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           ++ +  +++G   N L SEA+ +F +MR +GV I+  T   +L  C     L  G   H 
Sbjct: 242 SITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHA 301

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              +   + +  VG+ L+ MY KC SV     +F ++  K +I+W AMI GY QNG    
Sbjct: 302 YITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEE 361

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            + ++ EM+  G+ PD  T   V+SSCA+L +   G +       +G      ++NAL+ 
Sbjct: 362 AVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVT 421

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +Y +CG+++ A  +FD M     VSWTA++ GY   G  +  + LF++ML  G++PDG  
Sbjct: 422 LYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVT 481

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+ VLSACS +GL DKG  YF+ M+  + + P  +HYTCM+DL  R+G L +A E I+ M
Sbjct: 482 FIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQM 541

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
              PD   W  LL AC++  ++E+ + A   ++KL+P N   YVLL ++++     + + 
Sbjct: 542 PRCPDAFGWATLLSACRLRGDMEIGKWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVA 601

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
           ++R  MR+R++KK+PG S+++ K +VH+F   D++H  +  IY  L  L + + E +G K
Sbjct: 602 KLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSRTIYEKLQWLNSKMVE-EGYK 660

Query: 432 RSDQKNSEEHLNDTEV------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
             D  +    + D E       HSEKLAIAFG+I   P   I ++KNLR+C DCH   K 
Sbjct: 661 -PDVSSVLHDVADAEKVHMLSHHSEKLAIAFGLIFVPPEMPIRIVKNLRVCVDCHNATKF 719

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +SKI  R  +VRDA RFH F +G CSC D+W
Sbjct: 720 ISKITGRDILVRDAVRFHKFSNGICSCGDFW 750



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 178/361 (49%), Gaps = 36/361 (9%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKM--REQGVEINSVTMLCLLPICVDPGYLWLGMCC 69
            V YNAL++G+      + A   +  +   E GV  + +TM  ++ +    G   LG   
Sbjct: 108 AVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASALGDRALGRQV 167

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQ---------------------- 107
           HC  ++ G       G+ L+ MY K G +   R++FD+                      
Sbjct: 168 HCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMV 227

Query: 108 ---------VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC 158
                    + E+  ITW  M++G  QNGL +  L+++R M++ GV  D  TF  +L++C
Sbjct: 228 AEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTAC 287

Query: 159 AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWT 218
             L A   G ++   I    +  N F+ +AL++MY++C +++ A A+F  M  K ++SWT
Sbjct: 288 GALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWT 347

Query: 219 AIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278
           A+I GYG +G GE AV++F EM + GI+PD     SV+S+C++    ++G + F+ +   
Sbjct: 348 AMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQ-FHCLALV 406

Query: 279 YGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGAL-LGACKIHKNVELAE 337
            GL+P       +V L G+ G + +A  L + M    D   W AL +G  +  K  E  +
Sbjct: 407 SGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFH-DQVSWTALVMGYAQFGKAKETID 465

Query: 338 L 338
           L
Sbjct: 466 L 466



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 33/218 (15%)

Query: 84  VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM--KS 141
            GN L++   + G V    +LF  +P++  +++NA+++G+++ G        Y  +    
Sbjct: 79  TGNSLLSALARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDE 138

Query: 142 LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKK 201
            GV P  +T  GV+   + LG  ++G +V  QI   GFG+  F  + L++MYA+ G +  
Sbjct: 139 AGVRPSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGD 198

Query: 202 ARAIFDGMPRKTVV-------------------------------SWTAIIGGYGIHGHG 230
           AR +FD M  K VV                               +WT ++ G   +G  
Sbjct: 199 ARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLE 258

Query: 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
             A+ +F  M   G+  D   F S+L+AC      ++G
Sbjct: 259 SEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEG 296



 Score = 39.3 bits (90), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 5/135 (3%)

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
           G N    N+L++  AR G ++    +F  +P++  VS+ A++ G+   G    A   +  
Sbjct: 74  GRNLVTGNSLLSALARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVA 133

Query: 240 MLK--SGIRPDGTAFVSVLSACSHAGLTDKGL-EYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           +L+  +G+RP       V+   S   L D+ L    +    + G        + +VD+  
Sbjct: 134 LLRDEAGVRPSRITMSGVVMVAS--ALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYA 191

Query: 297 RAGQLNEALELIESM 311
           + G + +A  + + M
Sbjct: 192 KVGPIGDARRVFDEM 206


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/539 (38%), Positives = 298/539 (55%), Gaps = 65/539 (12%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           TH   C  +   G       ++A+SLF ++RE  +  +  T   +L  C     +  G  
Sbjct: 79  THWNTCLRSFAEG----DSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKI 134

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWN----------- 117
            H    K GL  +  + N ++ +Y  CG +   RK+FD++P++ +ITWN           
Sbjct: 135 VHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGD 194

Query: 118 --------------------AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
                               +MI GYAQ G +   ++L+ EM+  G+ P+ VT V VL +
Sbjct: 195 AEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVA 254

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
           CA +G   +G  +      +G+  N  + N LI+MY +CG L+ A  IFD M  +TVVSW
Sbjct: 255 CADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSW 314

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
           +A+I G   HG  E A+ LF++M+ +G++P+   F+ +L ACSH G+ +KG +YF  M  
Sbjct: 315 SAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTR 374

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
            YG+ P  EHY CMVDL  RAG L EA E I +M + P+G VWGALLG CK+HKNV+LAE
Sbjct: 375 DYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNVKLAE 434

Query: 338 LAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRV 397
            A   + KL+P+N GYYV+LSNIY+EA   + + RVR +MR+R    +     ++LKG V
Sbjct: 435 EATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRG-TWEKLLQRMKLKGYV 493

Query: 398 HLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFG 457
                     + +V +  M                 DQK  E+ L     HSEKLA+ FG
Sbjct: 494 ---------PNTSVVLLDM---------------EEDQK--EKFLYR---HSEKLAVVFG 524

Query: 458 IINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +I T+PGT I +MKNLR+C DCH  +K++S +  R+ +VRD  RFH FK+G CSC DYW
Sbjct: 525 LIKTTPGTVIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 583



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 122/288 (42%), Gaps = 38/288 (13%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
            S  Y + +F  +    +  WN  +  +A+       + L+  ++   + PD  T   VL
Sbjct: 61  SSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVL 120

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
            +C+ L     G  V   ++  G  SN FL N ++++YA CG +  AR +FD MP++ V+
Sbjct: 121 KACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVI 180

Query: 216 -------------------------------SWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
                                          SWT++IGGY   G  + A+ LF EM  +G
Sbjct: 181 TWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAG 240

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
           + P+    V+VL AC+  G    G    +   N+ G +        ++D+  + G L +A
Sbjct: 241 LLPNEVTVVAVLVACADMGNLVLG-RRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDA 299

Query: 305 LELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTG 352
             + ++M  E     W A++     H   E A   F K+I     NTG
Sbjct: 300 CRIFDNM-EERTVVSWSAMIAGLAAHGRAEDALALFNKMI-----NTG 341


>gi|297798412|ref|XP_002867090.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312926|gb|EFH43349.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 803

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/513 (36%), Positives = 296/513 (57%), Gaps = 13/513 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +N LI  Y  NS V++A   F KM EQ G++ + +T++ LLP C     +  G   H 
Sbjct: 295 VAWNVLIGCYARNSRVTDAFLCFQKMSEQNGLQPDVITLINLLPACA----ILEGRTIHG 350

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             ++ G      +   L+ MY + G +     +FD++ EK LI+WN++I+ Y QNG    
Sbjct: 351 YAMRRGFLPHIVLDTALIDMYGEWGQLKSAEVIFDRIAEKNLISWNSIIAAYVQNGKNYS 410

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            LEL++++    + PD+ T   +L + A   + S G ++   I  + +GSN  + N+L++
Sbjct: 411 ALELFQKLWDSSLLPDSTTIASILPAYAESLSLSEGRQIHAYIVKSRYGSNTIILNSLVH 470

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA CG+L+ AR  F+ +  K VVSW +II  Y +HG G ++V LF EM+ S + P+ + 
Sbjct: 471 MYAMCGDLEDARKCFNHVLLKDVVSWNSIIMAYAVHGFGRISVCLFSEMIASKVDPNKST 530

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F S+L+ACS +G+ D+G EYF  MK +YG+ PG EHY  M+DL+GR G  + A   I  M
Sbjct: 531 FASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGYMLDLIGRTGNFSSAKRFIREM 590

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
              P   +WG+LL A + H ++ +AE A  ++ K+E  NTG YVLL N+Y+EAR  + + 
Sbjct: 591 PFLPTARIWGSLLNASRNHNDITVAEFAAEQIFKMEHDNTGCYVLLLNMYAEARRWEDVN 650

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----- 426
           R++++M  + + +    S VE K + H+   GDR+H +T +IY +LD +  ++ E     
Sbjct: 651 RIKLLMESKGISRTSSRSTVEAKSKTHVLTNGDRSHVETNKIYEVLDIVSRMIGEEEEED 710

Query: 427 ---HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFI 483
              H  +K   +  ++   N    HS +LA  FG+I+T  G  + V  N RIC  CH F+
Sbjct: 711 SYVHYVSKLRRETLAKSRSNSPRRHSVRLATCFGLISTETGRTVTVRNNTRICRKCHEFL 770

Query: 484 KLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +  SK+  R+ +V D+  FHHF +G CSC +YW
Sbjct: 771 EKASKMTRREIVVGDSKIFHHFSNGRCSCGNYW 803



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/411 (27%), Positives = 202/411 (49%), Gaps = 22/411 (5%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  K+   T  +N +I G+    L  EA+ L+ +M   GV+ +S T   ++      
Sbjct: 82  LFDEMNKAD--TFVWNVMIKGFTSCGLYFEALQLYCRMVFSGVKADSFTYPFVIKSVTGI 139

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H + +K     D  V N L+++Y+K G      K+F+++PE+ +++WN+MI
Sbjct: 140 SSLEEGKKIHAMVIKLRFVSDVYVCNSLISLYMKLGCSWDAEKVFEEMPERDIVSWNSMI 199

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVE-QQIQANGF 179
           SGY         L L++EM   G  PD  + +  L +C+H+ + ++G E+    +++   
Sbjct: 200 SGYLALEDGFRSLMLFKEMLKFGFKPDRFSTMSALGACSHVYSPNMGKELHCHAVRSRIE 259

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             +  +  ++++MY++ G +  A  IF  + ++ +V+W  +IG Y  +     A   F +
Sbjct: 260 TGDVMVMTSILDMYSKYGEVSYAERIFKCIIQRNIVAWNVLIGCYARNSRVTDAFLCFQK 319

Query: 240 ML-KSGIRPDGTAFVSVLSACS-HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
           M  ++G++PD    +++L AC+   G T  G    Y M+   G  P     T ++D+ G 
Sbjct: 320 MSEQNGLQPDVITLINLLPACAILEGRTIHG----YAMRR--GFLPHIVLDTALIDMYGE 373

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGA-CKIHKNVELAELAFGKVI--KLEPMNTGYY 354
            GQL  A E+I   + E +   W +++ A  +  KN    EL F K+    L P +T   
Sbjct: 374 WGQLKSA-EVIFDRIAEKNLISWNSIIAAYVQNGKNYSALEL-FQKLWDSSLLPDSTTIA 431

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF-MVGD 404
            +L   Y+E+ +L    ++   +    +K   G + + L   VH++ M GD
Sbjct: 432 SILP-AYAESLSLSEGRQIHAYI----VKSRYGSNTIILNSLVHMYAMCGD 477



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 130/254 (51%), Gaps = 5/254 (1%)

Query: 92  YVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTF 151
           +   G ++   +LFD++ +     WN MI G+   GL    L+LY  M   GV  D+ T+
Sbjct: 70  FADSGLMEDALQLFDEMNKADTFVWNVMIKGFTSCGLYFEALQLYCRMVFSGVKADSFTY 129

Query: 152 VGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR 211
             V+ S   + +   G ++   +    F S+ ++ N+LI++Y + G    A  +F+ MP 
Sbjct: 130 PFVIKSVTGISSLEEGKKIHAMVIKLRFVSDVYVCNSLISLYMKLGCSWDAEKVFEEMPE 189

Query: 212 KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE- 270
           + +VSW ++I GY     G  ++ LF EMLK G +PD  + +S L ACSH    + G E 
Sbjct: 190 RDIVSWNSMISGYLALEDGFRSLMLFKEMLKFGFKPDRFSTMSALGACSHVYSPNMGKEL 249

Query: 271 YFYGMKNKYGLQPGPEH-YTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
           + + ++++  ++ G     T ++D+  + G+++ A E I   +++ +   W  L+G    
Sbjct: 250 HCHAVRSR--IETGDVMVMTSILDMYSKYGEVSYA-ERIFKCIIQRNIVAWNVLIGCYAR 306

Query: 330 HKNVELAELAFGKV 343
           +  V  A L F K+
Sbjct: 307 NSRVTDAFLCFQKM 320


>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
 gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/517 (39%), Positives = 292/517 (56%), Gaps = 8/517 (1%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKM--REQGVEINSVTMLCLLPICVDPGYLWL 65
           ST  +  +N +I  Y      ++A+ LF  M  +      +  T   LL  C       +
Sbjct: 55  STQNSFFHNTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRV 114

Query: 66  GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
           G   H +  K GL+ D  V N L+ MY  CG      K+F ++ ++ +++W +MI G+  
Sbjct: 115 GKQLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVD 174

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
           +  A   + L+ EM   GV P+  T V VL +CA  GA  +G  V+  I+    G    +
Sbjct: 175 DDRALEAIRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEANV 234

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
             ALI+MYA+CG++  AR +FDG+  K V +WTA+I G   HG  E AV LFD+M   G+
Sbjct: 235 RTALIDMYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGL 294

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
           RPD     +VLSAC +AG   +G  YF  M  KYG++P  +HY CMVDLL R G L+EA 
Sbjct: 295 RPDERTMTAVLSACRNAGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAE 354

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGK--VIKLEPMNTGYYVLLSNIYSE 363
           E I  M +EPD  +W  L+ A K+H +++ +E       ++K++  + G YVLL N+Y+ 
Sbjct: 355 EFIRKMPIEPDVVLWRTLIWASKVHGDIDRSEQLMKDRGLLKMDSDDCGSYVLLGNVYAS 414

Query: 364 ARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL-EN 422
           A       ++R +M ++ L K PG S +E+ G VH F  GD  H +  +IY  LD++ E 
Sbjct: 415 AGKWHDKAKMRELMNQKGLSKPPGCSRIEVDGLVHEFAAGDSGHIEAEKIYAKLDEVEER 474

Query: 423 LVQEHDGTKRSD---QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDC 479
           L  E    K S+   + +++E       HSEKLA+AFG+I TSPGTEI ++KNLR C DC
Sbjct: 475 LKAEGYHPKLSEVLLEIDNKEKAFQLRHHSEKLAVAFGLIKTSPGTEIRIVKNLRSCEDC 534

Query: 480 HLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           H  +KL+SKI  +  IVRD  RFHHF +G CSCKDYW
Sbjct: 535 HSVLKLISKIYQQDIIVRDRIRFHHFINGDCSCKDYW 571



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 122/253 (48%), Gaps = 8/253 (3%)

Query: 95  CGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM--KSLGVCPDAVTFV 152
            G + Y   + + +  +     N MI  Y+Q    T  L L+  M  +     PD  T+ 
Sbjct: 41  AGDLTYAHLILNSLSTQNSFFHNTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYP 100

Query: 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK 212
            +L SCA L    VG ++   I  +G  S+ +++N LI+MY+ CG   +A  +F  M  +
Sbjct: 101 FLLKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDR 160

Query: 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF 272
            VVSWT++I G+        A++LF+EM++ G+ P+    VSVL AC+ AG    G    
Sbjct: 161 DVVSWTSMIDGFVDDDRALEAIRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMG-RRV 219

Query: 273 YGM--KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
            G+  + K GL+      T ++D+  + G +  A ++ +  +V  D   W A++     H
Sbjct: 220 QGVIEERKIGLEANVR--TALIDMYAKCGSIGSARKVFDG-IVNKDVFAWTAMISGLANH 276

Query: 331 KNVELAELAFGKV 343
              E A   F ++
Sbjct: 277 GLCEEAVTLFDQM 289


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/510 (37%), Positives = 296/510 (58%), Gaps = 7/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++  GY   +   E  SLF ++ E G+  ++ T   LL  C     L  G   HC+
Sbjct: 95  VIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCL 154

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K GLD +  V   L+ MY +C  VD  R +FD++ E  ++ +NAMI+GYA+       
Sbjct: 155 SMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEA 214

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+REM+   + P+ +T + VLSSCA LG+  +G  + +  + + F     +N ALI+M
Sbjct: 215 LSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDM 274

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           +A+CG+L  A +IF+ M  K   +W+A+I  Y  HG  E ++ +F+ M    ++PD   F
Sbjct: 275 FAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITF 334

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + +L+ACSH G  ++G +YF  M +K+G+ P  +HY  MVDLL RAG L +A E I+ + 
Sbjct: 335 LGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLP 394

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           + P   +W  LL AC  H N++LAE    ++ +L+  + G YV+LSN+Y+  +  + +  
Sbjct: 395 ISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDS 454

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD------KLENLVQE 426
           +R +M++R+  K PG S +E+   VH F  GD     T +++R LD      KL   V +
Sbjct: 455 LRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPD 514

Query: 427 HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
                 ++  + E+ +     HSEKLAI FG++NT PGT I V+KNLR+C DCH   KL+
Sbjct: 515 TSMVVHANMNDQEKEIT-LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLI 573

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           S I  R+ ++RD  RFHHF+ G CSC D+W
Sbjct: 574 SLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 121/248 (48%), Gaps = 2/248 (0%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
            S+ Y R LF+ + E  ++ +N+M  GY++      V  L+ E+   G+ PD  TF  +L
Sbjct: 77  SSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLL 136

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
            +CA   A   G ++       G   N ++   LINMY  C ++  AR +FD +    VV
Sbjct: 137 KACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVV 196

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
            + A+I GY        A+ LF EM    ++P+    +SVLS+C+  G  D G ++ +  
Sbjct: 197 CYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLG-KWIHKY 255

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVEL 335
             K+      +  T ++D+  + G L++A+ + E M  + D   W A++ A   H   E 
Sbjct: 256 AKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYK-DTQAWSAMIVAYANHGKAEK 314

Query: 336 AELAFGKV 343
           + L F ++
Sbjct: 315 SMLMFERM 322


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/538 (38%), Positives = 308/538 (57%), Gaps = 37/538 (6%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           Y +LI G+V     ++A++LF +M  + V  ++  +  +L  CV    L  G   H + +
Sbjct: 93  YTSLIDGFVSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVL 152

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT------------------- 115
           K GL LD S+   L+ +Y KCG ++  RK+FD +PE+ ++                    
Sbjct: 153 KSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIE 212

Query: 116 ------------WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163
                       W  +I G  +NG     LE++REM+  GV P+ VTFV VLS+CA LGA
Sbjct: 213 VFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGA 272

Query: 164 HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGG 223
             +G  +   ++  G   N F+  ALINMY+RCG++ +A+A+FDG+  K V ++ ++IGG
Sbjct: 273 LELGRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGG 332

Query: 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP 283
             +HG    AV+LF EMLK  +RP+G  FV VL+ACSH GL D G E F  M+  +G++P
Sbjct: 333 LALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEP 392

Query: 284 GPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
             EHY CMVD+LGR G+L EA + I  M VE D  +  +LL ACKIHKN+ + E     +
Sbjct: 393 EVEHYGCMVDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIHKNIGMGEKVAKLL 452

Query: 344 IKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVG 403
            +   +++G +++LSN Y+          VR  M +  + K+PG S +E+   +H F  G
Sbjct: 453 SEHYRIDSGSFIMLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVNNAIHEFFSG 512

Query: 404 DRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQK-----NSEEHLNDTEVHSEKLAIAFGI 458
           D  H +   IY+ L++L N + + +G   + +      + E+      VHSE+LAI +G+
Sbjct: 513 DLRHPERKRIYKKLEEL-NYLTKFEGYLPATEVALHDIDDEQKELALAVHSERLAICYGL 571

Query: 459 INTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           ++T   T + V KNLRIC DCH  IKL++KI  R+ +VRD  RFHHF++G CSCKDYW
Sbjct: 572 VSTEAYTTLRVGKNLRICDDCHAMIKLIAKITRRKIVVRDRNRFHHFENGECSCKDYW 629



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/261 (32%), Positives = 135/261 (51%), Gaps = 17/261 (6%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF+E    T  TVC+  +I G V N   +  + +F +M+ +GVE N VT +C+L  C   
Sbjct: 213 VFNE--MGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQL 270

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L LG   H    K G++++  V   L+ MY +CG +D  + LFD V  K + T+N+MI
Sbjct: 271 GALELGRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMI 330

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA-NGF 179
            G A +G +   +EL+ EM    V P+ +TFVGVL++C+H G   +G E+ + ++  +G 
Sbjct: 331 GGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGI 390

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS----WTAIIGGYGIH---GHGEV 232
                    ++++  R G L++A   FD + R  V +      +++    IH   G GE 
Sbjct: 391 EPEVEHYGCMVDILGRVGRLEEA---FDFIGRMGVEADDKMLCSLLSACKIHKNIGMGEK 447

Query: 233 AVQLFDEMLKSGIRPDGTAFV 253
             +L  E      R D  +F+
Sbjct: 448 VAKLLSEHY----RIDSGSFI 464



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 137/308 (44%), Gaps = 35/308 (11%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           HC  +K     D  V   L+ +Y K   +D+  KLF       +  + ++I G+   G  
Sbjct: 47  HCHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSY 106

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
           T  + L+ +M    V  D      +L +C    A   G EV   +  +G G +  +   L
Sbjct: 107 TDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIALKL 166

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVS-------------------------------WT 218
           + +Y +CG L+ AR +FDGMP + VV+                               WT
Sbjct: 167 VELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWT 226

Query: 219 AIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278
            +I G   +G     +++F EM   G+ P+   FV VLSAC+  G  + G  + +    K
Sbjct: 227 MVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELG-RWIHAYMRK 285

Query: 279 YGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH-KNVELAE 337
            G++        ++++  R G ++EA  L + + V+ D + + +++G   +H K++E  E
Sbjct: 286 CGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVK-DVSTYNSMIGGLALHGKSIEAVE 344

Query: 338 LAFGKVIK 345
           L F +++K
Sbjct: 345 L-FSEMLK 351


>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 700

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/523 (36%), Positives = 304/523 (58%), Gaps = 18/523 (3%)

Query: 5   SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLW 64
           +I + +   CYN++++  V +  + EAV + G+M ++GV  +SVT + ++ +C     L 
Sbjct: 185 NIDNDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDLG 244

Query: 65  LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYA 124
           LG+  H   +K GL  D  VG+ L+ M+ KCG V   RK+FD +  + ++ W ++++ Y 
Sbjct: 245 LGLQVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYL 304

Query: 125 QNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF 184
           QNG     L L   M   G   +  TF  +L++ A + A   G  +  +++  G  +   
Sbjct: 305 QNGEFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHGDLLHARVEKLGIKNRVI 364

Query: 185 LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
           + NALINMY++CG +  +  +F  M  + +++W A+I GY  HG G+ A+ LF +ML +G
Sbjct: 365 VGNALINMYSKCGCIDSSYDVFFDMRNRDIITWNAMICGYSQHGLGKQALLLFQDMLSAG 424

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
             P+   FV VLSAC+H  L ++G  Y   +   + ++PG EHYTC+V +L RAG L EA
Sbjct: 425 ECPNHVTFVGVLSACAHLALVNEGFYYLNQLMKHFKVEPGLEHYTCVVAVLCRAGMLEEA 484

Query: 305 LELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEA 364
              + +  V+ D   W  LL AC IH+N  L       +++++P + G Y LLSN+Y++A
Sbjct: 485 ENFMRTTQVKWDVVAWRVLLNACNIHRNYNLGTKIAETILQMDPRDMGTYTLLSNMYAKA 544

Query: 365 RNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLV 424
           R+ D +  +R MMRER +KK+PG S++E++  VH+F     NH + ++IY  +  L  ++
Sbjct: 545 RSWDSVTMIRKMMRERNVKKEPGVSWIEIRNAVHVFSSDGSNHPECIQIYNKVQLLLEMI 604

Query: 425 QE-----------HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
           ++           HD     + +  E +LN    HSEKLAIA+G++       I V+KNL
Sbjct: 605 KQLGYVPNIEAVLHD----VEDEQKESYLN---YHSEKLAIAYGLMKIPSPAPIRVIKNL 657

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           RIC DCH  +KL+SK+ +R  IVRDA+RFHHF+ G C+C D+W
Sbjct: 658 RICEDCHTAVKLISKVTNRLIIVRDASRFHHFRDGTCTCTDHW 700



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 156/332 (46%), Gaps = 15/332 (4%)

Query: 1   VFDE-SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD 59
           +FDE S++S    V YN L+ GY+ +    E V LF  M     + N      +L  C  
Sbjct: 77  LFDEMSLRSV---VSYNVLMGGYLHSGEHLEVVKLFKNMVSSLYQPNEYVFTTVLSACAH 133

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT---- 115
            G ++ GM CH    KFGL     V + L+ MY KC  VD   ++ +   E G I     
Sbjct: 134 SGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQVLE--SEHGNIDNDND 191

Query: 116 ---WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
              +N++++   ++G     +E+   M   GV  D+VT+V V+  C  +    +GL+V  
Sbjct: 192 AFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDLGLGLQVHA 251

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
           Q+   G   + F+ + L++M+ +CG++  AR +FDG+  + VV WT+++  Y  +G  E 
Sbjct: 252 QLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNGEFEE 311

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
            + L   M + G   +   F  +L+A +       G +  +    K G++        ++
Sbjct: 312 TLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHG-DLLHARVEKLGIKNRVIVGNALI 370

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
           ++  + G ++ + ++   M    D   W A++
Sbjct: 371 NMYSKCGCIDSSYDVFFDMR-NRDIITWNAMI 401



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 117/246 (47%), Gaps = 7/246 (2%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+ +YVKC  +   R LFD++  + ++++N ++ GY  +G    V++L++ M S    
Sbjct: 59  NSLINLYVKCSKLRLARYLFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKLFKNMVSSLYQ 118

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P+   F  VLS+CAH G    G++    +   G   + F+ ++L++MY++C ++  A  +
Sbjct: 119 PNEYVFTTVLSACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQV 178

Query: 206 FDGM-----PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
            +              + +++      G    AV++   M+  G+  D   +VSV+  C 
Sbjct: 179 LESEHGNIDNDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCG 238

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320
                  GL+  +    K GL       + +VD+ G+ G +  A ++ +  L   +  VW
Sbjct: 239 QIRDLGLGLQ-VHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDG-LQNRNVVVW 296

Query: 321 GALLGA 326
            +L+ A
Sbjct: 297 TSLMTA 302


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/492 (38%), Positives = 296/492 (60%), Gaps = 24/492 (4%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGY-LWLGMCCHCI 72
           + A++SGY  N ++ EA  +F  M E+  V  N++    +    +D    L+  M C  +
Sbjct: 258 WTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNV 317

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
                     +  N ++T Y + G ++  + +FD +P+K  ++W AM++ Y+Q G +   
Sbjct: 318 ----------ASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEET 367

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+L+ EM   G   +   F  VLS+CA + A   G+++  ++   G+G   F+ NAL+ M
Sbjct: 368 LQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAM 427

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CGN++ AR  F+ M  + VVSW  +I GY  HG G+ A+++FD M  +  +PD    
Sbjct: 428 YFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITL 487

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           V VL+ACSH+GL +KG+ YFY M + +G+   PEHYTCM+DLLGRAG+L EA +L++ M 
Sbjct: 488 VGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMP 547

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            EPD  +WGALLGA +IH+N EL   A  K+ +LEP N G YVLLSNIY+ +       +
Sbjct: 548 FEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARK 607

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           +R+MM ER +KK PG+S++E++ +VH F  GD  H +  +IY  L+ L+  +++      
Sbjct: 608 MRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSA 667

Query: 433 SD------QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCH----LF 482
           +D      ++  +EH+   + HSEKLA+A+GI+N  PG  I V+KNLR+CGDCH     +
Sbjct: 668 TDMVLHDVEEEEKEHM--LKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKAW 725

Query: 483 IKLVSKIVDRQF 494
           I+L+ K+  R F
Sbjct: 726 IELMLKVSGRTF 737



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 123/248 (49%), Gaps = 4/248 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V + A+++ Y       E + LF +M   G  +N     C+L  C D   L  GM  H 
Sbjct: 348 AVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHG 407

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             ++ G  +   VGN L+ MY KCG+++  R  F+++ E+ +++WN MI+GYA++G    
Sbjct: 408 RLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKE 467

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN-GFGSNPFLNNALI 190
            LE++  M++    PD +T VGVL++C+H G    G+     +  + G  + P     +I
Sbjct: 468 ALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMI 527

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++  R G L +A  +   MP       W A++G   IH + E+     +++ +  + P+ 
Sbjct: 528 DLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFE--LEPEN 585

Query: 250 TAFVSVLS 257
                +LS
Sbjct: 586 AGMYVLLS 593



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 140/317 (44%), Gaps = 30/317 (9%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVT-MLCLLPICVDPGYLWLGMCC 69
           T  YNA+++GY  N  +  A SLF  + R      N++   L +     D   L+  M  
Sbjct: 69  TSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPV 128

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
                      D    N +++ +   G V   R  FD  PEK  ++WN M++ Y +NG  
Sbjct: 129 R----------DSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRV 178

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
                L+          D +++  ++S     G  S   E+  ++     G +    N +
Sbjct: 179 EEARGLFNSRTEW----DVISWNALMSGYVQWGKMSEARELFDRMP----GRDVVSWNIM 230

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++ YAR G++ +AR +FD  P + V +WTA++ GY  +G  E A ++FD M +     + 
Sbjct: 231 VSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NA 286

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
            ++ ++++A     + D+  E F  M  +         +  M+    +AG L EA  + +
Sbjct: 287 VSWNAMVAAYIQRRMMDEAKELFNMMPCR-----NVASWNTMLTGYAQAGMLEEAKAVFD 341

Query: 310 SMLVEPDGAVWGALLGA 326
           +M  + D   W A+L A
Sbjct: 342 TM-PQKDAVSWAAMLAA 357



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 17/187 (9%)

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
           +N  I  + R G +  A  +F  MPR++  ++ A++ GY  +G   +A  LF    ++  
Sbjct: 41  SNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLF----RAIP 96

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
           RPD  ++ ++L    HA      L    G+ ++  ++     Y  M+      G ++ A 
Sbjct: 97  RPDNYSYNTLL----HALAVSSSLADARGLFDEMPVRDSVT-YNVMISSHANHGLVSLAR 151

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGK-----VIKLEPMNTGYYVLLSNI 360
              + +  E D   W  +L A   +  VE A   F       VI    + +GY  +    
Sbjct: 152 HYFD-LAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGY--VQWGK 208

Query: 361 YSEARNL 367
            SEAR L
Sbjct: 209 MSEAREL 215


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/509 (37%), Positives = 299/509 (58%), Gaps = 6/509 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + ALI GY  + L  EA+ +F  M  +GV+ N  T+ C+L  C + G L  G   H +
Sbjct: 169 VLFTALIVGYAQHGLDGEALKIFEDMVNRGVKPNEYTLACILINCGNLGDLVNGQLIHGL 228

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK GL+   +    L+TMY +C  ++   K+F+Q+     +TW + + G  QNG     
Sbjct: 229 VVKSGLESVVASQTSLLTMYSRCNMIEDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVA 288

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + ++REM    + P+  T   +L +C+ L    VG ++       G   N +   ALIN+
Sbjct: 289 VSIFREMIRCSISPNPFTLSSILQACSSLAMLEVGEQIHAITMKLGLDGNKYAGAALINL 348

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CGN+ KAR++FD +    VV+  ++I  Y  +G G  A++LF+ +   G+ P+G  F
Sbjct: 349 YGKCGNMDKARSVFDVLTELDVVAINSMIYAYAQNGFGHEALELFERLKNMGLVPNGVTF 408

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +S+L AC++AGL ++G + F  ++N + ++   +H+TCM+DLLGR+ +L EA  LIE + 
Sbjct: 409 ISILLACNNAGLVEEGCQIFASIRNNHNIELTIDHFTCMIDLLGRSRRLEEAAMLIEEVR 468

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
             PD  +W  LL +CKIH  VE+AE    K+++L P + G ++LL+N+Y+ A   + ++ 
Sbjct: 469 -NPDVVLWRTLLNSCKIHGEVEMAEKVMSKILELAPGDGGTHILLTNLYASAGKWNQVIE 527

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE---HDG 429
           ++  +R+ +LKK P  S+V++   VH FM GD +H +++EI+ ML  L   V+    +  
Sbjct: 528 MKSTIRDLKLKKSPAMSWVDVDREVHTFMAGDLSHPRSLEIFEMLHGLMKKVKTLGYNPN 587

Query: 430 TKRSDQK-NSEEHLNDTEVHSEKLAIAFGIINT-SPGTEIVVMKNLRICGDCHLFIKLVS 487
           T+   Q  + E+ ++    HSEKLAIA+ +  T    T I + KNLR+CGDCH +IK VS
Sbjct: 588 TRFVLQDLDEEKKISSLYYHSEKLAIAYALWKTIGRTTTIRIFKNLRVCGDCHSWIKFVS 647

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +  R  I RD+ RFHHFK G CSCKDYW
Sbjct: 648 LLTGRDIIARDSKRFHHFKGGLCSCKDYW 676



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 163/317 (51%), Gaps = 5/317 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE + S H+ V +N++IS ++ +    EAV  +G M  +GV  ++ T   +       
Sbjct: 57  LFDE-LPSRHI-VTWNSMISSHISHGKSKEAVEFYGNMLMEGVLPDAYTFSAISKAFSQL 114

Query: 61  GYLWLGMCCHCICVKFGLD-LDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
           G +  G   H + V  GL+ LD  V + L+ MY K   +     +F +V EK ++ + A+
Sbjct: 115 GLIRHGQRAHGLAVVLGLEVLDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTAL 174

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I GYAQ+GL    L+++ +M + GV P+  T   +L +C +LG    G  +   +  +G 
Sbjct: 175 IVGYAQHGLDGEALKIFEDMVNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGL 234

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            S      +L+ MY+RC  ++ +  +F+ +     V+WT+ + G   +G  EVAV +F E
Sbjct: 235 ESVVASQTSLLTMYSRCNMIEDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFRE 294

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M++  I P+     S+L ACS   + + G E  + +  K GL         +++L G+ G
Sbjct: 295 MIRCSISPNPFTLSSILQACSSLAMLEVG-EQIHAITMKLGLDGNKYAGAALINLYGKCG 353

Query: 300 QLNEALELIESMLVEPD 316
            +++A  + + +L E D
Sbjct: 354 NMDKARSVFD-VLTELD 369



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 132/249 (53%), Gaps = 15/249 (6%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   +K G    F +G+ L+  Y+KCGS+   RKLFD++P + ++TWN+MIS +  +G +
Sbjct: 24  HTNVIKSGFSYSF-LGHKLIDGYIKCGSLAEARKLFDELPSRHIVTWNSMISSHISHGKS 82

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLG-------AHSVGLEVEQQIQANGFGSN 182
              +E Y  M   GV PDA TF  +  + + LG       AH + + +  ++       +
Sbjct: 83  KEAVEFYGNMLMEGVLPDAYTFSAISKAFSQLGLIRHGQRAHGLAVVLGLEVL------D 136

Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
            F+ +AL++MYA+   ++ A  +F  +  K VV +TA+I GY  HG    A+++F++M+ 
Sbjct: 137 GFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQHGLDGEALKIFEDMVN 196

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
            G++P+      +L  C + G    G +  +G+  K GL+      T ++ +  R   + 
Sbjct: 197 RGVKPNEYTLACILINCGNLGDLVNG-QLIHGLVVKSGLESVVASQTSLLTMYSRCNMIE 255

Query: 303 EALELIESM 311
           +++++   +
Sbjct: 256 DSIKVFNQL 264


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/512 (37%), Positives = 298/512 (58%), Gaps = 15/512 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+I+G + N  V  A +LF +MRE GV  N  T   +L   V      L    H  
Sbjct: 374 VSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVAS----LPPQIHAQ 429

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K   +    VG  L+  Y K  + +    +F  + +K +++W+AM++ YAQ G +   
Sbjct: 430 VIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGA 489

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF----LNNA 188
             ++ +M   G+ P+  T   V+ +CA   + + G+++ +Q  A            +++A
Sbjct: 490 TNIFIKMTMHGLKPNEFTISSVIDACA---SPTAGVDLGRQFHAISIKHRCHDALCVSSA 546

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           L++MYAR G+++ A+ IF+    + +VSW +++ GY  HG+ + A+ +F +M   GI  D
Sbjct: 547 LVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMD 606

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
           G  F+SV+  C+HAGL ++G  YF  M   YG+ P  EHY CMVDL  RAG+L+EA+ LI
Sbjct: 607 GVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLI 666

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
           E M       VW  LLGACK+HKNVEL +LA  K++ LEP ++  YVLLSNIYS A    
Sbjct: 667 EGMSFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAGKWK 726

Query: 369 GIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH- 427
               VR +M  +++KK+ G S++++K +VH F+  D++H  + +IY  L  +   +++  
Sbjct: 727 EKDEVRKLMDTKKVKKEAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKLRAMTTKLKQEG 786

Query: 428 ---DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
              D +    +   E+      +HSE+LA+AFG+I T PG  + + KNLR+CGDCH  IK
Sbjct: 787 YCPDTSFALHEVAEEQKEAMLAMHSERLALAFGLIATPPGAPLHIFKNLRVCGDCHTVIK 846

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +VSKI DR+ ++RD +RFHHF SG CSC D+W
Sbjct: 847 MVSKIEDREIVMRDCSRFHHFNSGVCSCGDFW 878



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 101/324 (31%), Positives = 170/324 (52%), Gaps = 6/324 (1%)

Query: 39  REQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDL-DFSVGNCLMTMYVKCGS 97
           R  G  +    ++ +L +C       LG   H +C++ G D  D  VG  L+ MY+K  S
Sbjct: 95  RCHGGRVGGGALVGVLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHS 154

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
           V  GRK+F+ +P++ ++TW ++++GY Q+G  + V+EL+  M++ GV P++VTF  VLS 
Sbjct: 155 VVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSV 214

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
            A  G   +G  V  Q    G  S  F+ N+L+NMYA+CG +++AR +F GM  + +VSW
Sbjct: 215 VASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSW 274

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL-EYFYGMK 276
             ++ G  ++GH   A+QLF +   S      + + +V+  C  A +   GL    +   
Sbjct: 275 NTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLC--ANIKQLGLARQLHSSV 332

Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELA 336
            K G        T ++D   +AGQL  AL++   M    +   W A++  C  + +V LA
Sbjct: 333 LKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLA 392

Query: 337 ELAFGKVIK--LEPMNTGYYVLLS 358
              F ++ +  + P +  Y  +L+
Sbjct: 393 AALFSRMREDGVAPNDFTYSTILT 416



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 129/247 (52%), Gaps = 1/247 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + +L++GY+ +  +S+ + LF +MR +GV  NSVT   +L +    G + LG   H  
Sbjct: 171 VTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQ 230

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VKFG      V N LM MY KCG V+  R +F  +  + +++WN +++G   NG     
Sbjct: 231 SVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEA 290

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+L+ + +S        T+  V+  CA++    +  ++   +   GF S   +  AL++ 
Sbjct: 291 LQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDA 350

Query: 193 YARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           Y++ G L  A  IF  M   + VVSWTA+I G   +G   +A  LF  M + G+ P+   
Sbjct: 351 YSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFT 410

Query: 252 FVSVLSA 258
           + ++L+A
Sbjct: 411 YSTILTA 417


>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 568

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/511 (40%), Positives = 295/511 (57%), Gaps = 18/511 (3%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTM-LCLLPICVDPGYLWLGMCCHCIC 73
           YNA+I    L++  S A++LF  M    V  +  T  L L    ++P       C H + 
Sbjct: 67  YNAVIRHVALHA-PSLALALFSHMHRTNVPFDHFTFPLILKSSKLNP------HCIHTLV 119

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           +K G   +  V N L+  Y   GS+    KLFD++P + LI+W+++IS +A+ GL    L
Sbjct: 120 LKLGFHSNIYVQNALINSYGTSGSLHASLKLFDEMPRRDLISWSSLISCFAKRGLPDEAL 179

Query: 134 ELYREM--KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L+++M  K   + PD V  + V+S+ + LGA  +G+ V   I   G      L +ALI+
Sbjct: 180 TLFQQMQLKESDILPDGVVMLSVISAVSSLGALELGIWVHAFISRIGVNLTVSLGSALID 239

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY+RCG++ ++  +FD MP + VV+WTA+I G  +HG G  A++ F +M++SG++PD  A
Sbjct: 240 MYSRCGDIDRSVKVFDEMPHRNVVTWTALINGLAVHGRGREALEAFYDMVESGLKPDRIA 299

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+ VL ACSH GL ++G   F  M ++YG++P  EHY CMVDLLGRAG + EA + +E M
Sbjct: 300 FMGVLVACSHGGLVEEGRRVFSSMWSEYGIEPALEHYGCMVDLLGRAGMVLEAFDFVEGM 359

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            V P+  +W  LLGAC  H  + LAE A  ++ +L+P + G YVLLSN Y    N     
Sbjct: 360 RVRPNSVIWRTLLGACVNHNLLVLAEKAKERIKELDPHHDGDYVLLSNAYGGVGNWVKKE 419

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
            VR  MRE ++ K+PG S V +    H F+ GD +H Q  EI R L  + + V+   G  
Sbjct: 420 GVRNSMRESKIVKEPGLSLVHIDQVAHEFVSGDNSHPQWEEITRFLGSVIDTVKL--GGY 477

Query: 432 RSDQKN------SEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
               KN       EE  +    HSEKLA+AF ++       I V+KNLRIC DCH F+K 
Sbjct: 478 TPSTKNVLHDIQEEEKEHSLGYHSEKLAVAFVLLYHRDRKTIRVIKNLRICYDCHSFMKH 537

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           VS   DR  ++RD +RFHHF+ G CSC+D+W
Sbjct: 538 VSGFFDRDIVIRDRSRFHHFRKGSCSCRDFW 568



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 8/228 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM--REQGVEINSVTMLCLLPICV 58
           +FDE  +     + +++LIS +    L  EA++LF +M  +E  +  + V ML ++    
Sbjct: 150 LFDEMPRRD--LISWSSLISCFAKRGLPDEALTLFQQMQLKESDILPDGVVMLSVISAVS 207

Query: 59  DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
             G L LG+  H    + G++L  S+G+ L+ MY +CG +D   K+FD++P + ++TW A
Sbjct: 208 SLGALELGIWVHAFISRIGVNLTVSLGSALIDMYSRCGDIDRSVKVFDEMPHRNVVTWTA 267

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           +I+G A +G     LE + +M   G+ PD + F+GVL +C+H G    G  V   + +  
Sbjct: 268 LINGLAVHGRGREALEAFYDMVESGLKPDRIAFMGVLVACSHGGLVEEGRRVFSSMWSE- 326

Query: 179 FGSNPFLNN--ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGG 223
           +G  P L +   ++++  R G + +A    +GM  R   V W  ++G 
Sbjct: 327 YGIEPALEHYGCMVDLLGRAGMVLEAFDFVEGMRVRPNSVIWRTLLGA 374


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/523 (38%), Positives = 294/523 (56%), Gaps = 9/523 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDES  S      +N ++SG + +   +EA+    +M   GV  ++ T   +  +    
Sbjct: 214 LFDES--SLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTFSNYTYSMVFALAGLL 271

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQ---VPEKGLITWN 117
               LG   H   V   L+ D  VG  LM MY KCG ++    +FD+     E     W+
Sbjct: 272 SSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSDFTEDRQFAWS 331

Query: 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
            M++GY QNG     LE +R M   GV         V S+CA+ G    G +V   ++  
Sbjct: 332 TMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACANAGMVEQGRQVHGFVEKL 391

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
           G   +  L +A+++MY++ G+L+ A  IF     K V  WT ++  Y  HG G +A+++F
Sbjct: 392 GHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCSYASHGQGRMALEIF 451

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
             M    I P+    V+VLSACSH+GL   G  YF  M+ +YG+ P  EHY CMVDL GR
Sbjct: 452 SRMKAEKIMPNEITLVAVLSACSHSGLVSDGYHYFNLMQEEYGIVPNTEHYNCMVDLYGR 511

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
           AG L++A   IE   +  +  VW  LL AC++HK++E A+LA  K+++LE  + G YVL+
Sbjct: 512 AGLLDKAKNFIEENKISHEAVVWKTLLSACRLHKHIEYAQLASEKLVQLEQYDAGSYVLM 571

Query: 358 SNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML 417
           SN+Y+         ++R  M+ERR++K PG S++ LK  VH F+  D +H ++ EIY  L
Sbjct: 572 SNMYATNNKWLDTFKLRSSMKERRVRKQPGQSWIHLKNVVHRFVALDTSHPRSAEIYAYL 631

Query: 418 DKLENLVQEHDGTKRSD--QKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNL 473
           +KL   ++E   T R+D    + EE   +T +  HSEKLAIAFGII+T  GT + + KNL
Sbjct: 632 EKLMERLKEMGYTSRTDLVVHDIEEEQRETSLKFHSEKLAIAFGIISTPVGTALRIFKNL 691

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           R+C DCH  IK +++  DR+ +VRD  RFHHFK G CSC+D+W
Sbjct: 692 RVCEDCHEAIKFITRATDREIVVRDLYRFHHFKDGQCSCEDFW 734



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 106/469 (22%), Positives = 196/469 (41%), Gaps = 65/469 (13%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQ--GVEINSVTMLCLLPICV 58
           VFD +   T     + ++ISG       ++ +  F +M ++      N+  +  +L  C 
Sbjct: 80  VFDGT--PTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVLRCCA 137

Query: 59  DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGR---------------- 102
             G +  G   H   ++ G+  D  + N ++ MY KCG  D+GR                
Sbjct: 138 GLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCG--DHGRARRAFGAMAQKDATSW 195

Query: 103 -----------------KLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
                            +LFD+   + + +WN ++SG  ++G  T  L   ++M   GV 
Sbjct: 196 NIVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVT 255

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
               T+  V +    L +  +G ++  ++       + F+  +L++MY +CG ++ A +I
Sbjct: 256 FSNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSI 315

Query: 206 FDGMPRKT---VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262
           FD     T     +W+ ++ GY  +G  E A++ F  ML+ G+        SV SAC++A
Sbjct: 316 FDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACANA 375

Query: 263 GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGA 322
           G+ ++G +  +G   K G +      + +VD+  ++G L +A  +  S   + + A+W  
Sbjct: 376 GMVEQGRQ-VHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTK-NVALWTT 433

Query: 323 LLGACKIHKNVELAELAFG--KVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380
           +L +   H    +A   F   K  K+ P       +LS         DG     +M  E 
Sbjct: 434 MLCSYASHGQGRMALEIFSRMKAEKIMPNEITLVAVLSACSHSGLVSDGYHYFNLMQEEY 493

Query: 381 RLKKDPGY--SYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH 427
            +  +  +    V+L GR  L                 LDK +N ++E+
Sbjct: 494 GIVPNTEHYNCMVDLYGRAGL-----------------LDKAKNFIEEN 525



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 90/189 (47%), Gaps = 6/189 (3%)

Query: 83  SVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM--K 140
           SV  C+ +  V    +    ++FD  P + L  W ++ISG A+ G     +  + EM  +
Sbjct: 59  SVRGCVPSSSVIARGLHNAHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDE 118

Query: 141 SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
                P+A    GVL  CA LG    G  +   I  +G   +  L NA+++MYA+CG+  
Sbjct: 119 CGATAPNAFVLAGVLRCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHG 178

Query: 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
           +AR  F  M +K   SW  +I      G    A QLFDE   S +R D +++ +++S   
Sbjct: 179 RARRAFGAMAQKDATSWNIVIRACLQDGDLVGATQLFDE---SSLR-DVSSWNTIVSGLM 234

Query: 261 HAGLTDKGL 269
             G T + L
Sbjct: 235 RHGHTTEAL 243


>gi|302805077|ref|XP_002984290.1| hypothetical protein SELMODRAFT_119978 [Selaginella moellendorffii]
 gi|300148139|gb|EFJ14800.1| hypothetical protein SELMODRAFT_119978 [Selaginella moellendorffii]
          Length = 448

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/446 (40%), Positives = 270/446 (60%), Gaps = 5/446 (1%)

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K GL+ +  VG  L+ MY +C S+   R +F+++P K  ITWNA+++ YAQ+G     LE
Sbjct: 4   KVGLEAETVVGTSLVNMYGRCHSLGNARLVFERIPCKDAITWNAIVTAYAQDGYGKEALE 63

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           +++ M+  GV   + TF+ VL +CA   A ++G  + Q + ANG      +  AL+NMYA
Sbjct: 64  IFQRMQQEGVKTGSATFISVLEACASTSALALGRVIHQNLVANGLDRELIVATALVNMYA 123

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG L +AR +FD M    VV+WTAI+ G   HGH E +  L   M   GI+P+   F+S
Sbjct: 124 KCGKLVEAREVFDQMEGMDVVAWTAIVAGSAQHGHIEESKDLMRRMELEGIKPNNVTFLS 183

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           ++ ACSH+G  D+  + F  M + +G  P PEH+ C++DLLGR G+L EA E+I++M  E
Sbjct: 184 LVFACSHSGYLDEARDCFIAMAD-HGFFPLPEHFRCVIDLLGRGGRLEEAQEVIDTMPFE 242

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
           P    W  +L AC++ K+V  AE+A  K  ++EP     Y+L+SN+Y+     D + +VR
Sbjct: 243 PGLTAWLTMLSACRLQKDVLRAEIAAEKCYEIEPTRPSAYLLMSNLYAALERWDDVKKVR 302

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD 434
            +M  R +KK+PG S +E+K R+H F   +++H Q   IY  L KL   ++E      + 
Sbjct: 303 RLMERRGVKKEPGLSCIEVKNRLHEFGAANKSHPQKDLIYEELRKLTLEIKEAGYVPDTS 362

Query: 435 --QKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIV 490
               N +E      +  HSE+LA+ +G+INT PGT + V+ NLR+C DCH   K +S I 
Sbjct: 363 LVLHNVDEETKQATLFHHSERLAVVYGLINTPPGTSLCVVNNLRMCSDCHTAFKYISTIS 422

Query: 491 DRQFIVRDATRFHHFKSGFCSCKDYW 516
           +R+ +VRDA RFH F +G CSCKDYW
Sbjct: 423 NREIVVRDANRFHTFATGGCSCKDYW 448



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 111/213 (52%), Gaps = 1/213 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            + +NA+++ Y  +    EA+ +F +M+++GV+  S T + +L  C     L LG   H 
Sbjct: 42  AITWNAIVTAYAQDGYGKEALEIFQRMQQEGVKTGSATFISVLEACASTSALALGRVIHQ 101

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             V  GLD +  V   L+ MY KCG +   R++FDQ+    ++ W A+++G AQ+G    
Sbjct: 102 NLVANGLDRELIVATALVNMYAKCGKLVEAREVFDQMEGMDVVAWTAIVAGSAQHGHIEE 161

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
             +L R M+  G+ P+ VTF+ ++ +C+H G      +    +  +GF   P     +I+
Sbjct: 162 SKDLMRRMELEGIKPNNVTFLSLVFACSHSGYLDEARDCFIAMADHGFFPLPEHFRCVID 221

Query: 192 MYARCGNLKKARAIFDGMP-RKTVVSWTAIIGG 223
           +  R G L++A+ + D MP    + +W  ++  
Sbjct: 222 LLGRGGRLEEAQEVIDTMPFEPGLTAWLTMLSA 254



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 93/189 (49%), Gaps = 3/189 (1%)

Query: 174 IQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVA 233
           ++  G  +   +  +L+NMY RC +L  AR +F+ +P K  ++W AI+  Y   G+G+ A
Sbjct: 2   VEKVGLEAETVVGTSLVNMYGRCHSLGNARLVFERIPCKDAITWNAIVTAYAQDGYGKEA 61

Query: 234 VQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293
           +++F  M + G++     F+SVL AC+       G      +    GL       T +V+
Sbjct: 62  LEIFQRMQQEGVKTGSATFISVLEACASTSALALGRVIHQNLVAN-GLDRELIVATALVN 120

Query: 294 LLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGY 353
           +  + G+L EA E+ + M    D   W A++     H ++E ++    + ++LE +    
Sbjct: 121 MYAKCGKLVEAREVFDQM-EGMDVVAWTAIVAGSAQHGHIEESK-DLMRRMELEGIKPNN 178

Query: 354 YVLLSNIYS 362
              LS +++
Sbjct: 179 VTFLSLVFA 187


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/506 (36%), Positives = 304/506 (60%), Gaps = 4/506 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           YN +I+G + N   SEA+ +  +M ++ +  ++VT +    +C     L LG+  HC   
Sbjct: 198 YNIIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMF 257

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           + G + D  V + ++ MY KCG++   RK+F+++  K +++W A+++ Y+QNG     L 
Sbjct: 258 RTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALN 317

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
            + EM+  G+ P+  TF  +L+SCA + A   G  +  +I+ +GF  +  + NALINMY+
Sbjct: 318 FFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYS 377

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           + G+++ A  +F  M  +  ++W+A+I G   HG G  A+ +F EML +   P    FV 
Sbjct: 378 KSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGREALVVFQEMLAAKECPHYVTFVG 437

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VLSAC+H G   +G  Y   +  + G++PG EHYTC+V LL +AG+L+EA   ++S  V+
Sbjct: 438 VLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFMKSTPVK 497

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
            D   W  LL AC +H+N  L +     V++++P + G Y+LLSN+Y++A+  DG++++R
Sbjct: 498 WDVVAWRTLLSACHVHQNYGLGKKVAELVLQMDPGDVGTYILLSNMYAKAKRWDGVVKIR 557

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----HDGT 430
            +MRER +KK+PG S++E++  +H+F+   + H ++ +IY  + +L  +++      D  
Sbjct: 558 KLMRERNVKKEPGASWIEIRNSIHVFVSEGKTHPESNQIYEKVQELLTMIRPMGYVPDIA 617

Query: 431 KRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIV 490
                   E+       HSEKLAIA+G++ T  G  I V+KNLR+C DCH  +KL+SK+ 
Sbjct: 618 AVFHDVEDEQKREYVSYHSEKLAIAYGLMKTPSGAPIRVIKNLRMCVDCHSAVKLISKVT 677

Query: 491 DRQFIVRDATRFHHFKSGFCSCKDYW 516
           +R  IVRDA RFH F  G CSC DYW
Sbjct: 678 NRMIIVRDANRFHCFGDGGCSCADYW 703



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 156/315 (49%), Gaps = 5/315 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
            V + AL++GY  N LV E + LF  M     +  N      ++  C D G +  G  CH
Sbjct: 93  VVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCH 152

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
              +K GL     V N L+ MY +   V     ++ +VP   + ++N +I+G  +NG  +
Sbjct: 153 GYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPS 212

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             LE+   M    +  D VT+V     C+HL    +GL+V  ++   G   + F+++A+I
Sbjct: 213 EALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAII 272

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MY +CGN+  AR +F+ +  K VVSWTAI+  Y  +G  E A+  F EM   G+ P+  
Sbjct: 273 DMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEY 332

Query: 251 AFVSVLSACSHAGLTDKGL-EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
            F  +L++C  AG++  G  +  +    K G +        ++++  ++G +  A ++  
Sbjct: 333 TFAVLLNSC--AGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFL 390

Query: 310 SMLVEPDGAVWGALL 324
            M+   D   W A++
Sbjct: 391 EMICR-DSITWSAMI 404



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 114/237 (48%), Gaps = 5/237 (2%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           T   V + A+++ Y  N    EA++ F +M   G+  N  T   LL  C     L  G  
Sbjct: 293 TKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKL 352

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            H    K G +    VGN L+ MY K GS++   K+F ++  +  ITW+AMI G + +GL
Sbjct: 353 LHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGL 412

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGL-EVEQQIQANGFGSNPFLNN 187
               L +++EM +   CP  VTFVGVLS+CAHLG+   G   + Q ++  G         
Sbjct: 413 GREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYT 472

Query: 188 ALINMYARCGNLKKARAIFDGMPRK-TVVSWTAIIGGYGIH---GHGEVAVQLFDEM 240
            ++ +  + G L +A       P K  VV+W  ++    +H   G G+   +L  +M
Sbjct: 473 CIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQM 529



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 123/246 (50%), Gaps = 11/246 (4%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG-V 144
           N L+ +Y KC  +   R LFD + ++ +++W A+++GY  NGL   VL L++ M S+  +
Sbjct: 66  NSLINLYAKCDQIMVARILFDGMRKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYM 125

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARA 204
            P+   F  ++SSC+  G    G +       +G   + ++ NALI MY+R  ++K A +
Sbjct: 126 RPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMS 185

Query: 205 IFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL 264
           ++  +P   V S+  II G   +G+   A+++ D M+   I  D   +V+    CSH   
Sbjct: 186 VWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKD 245

Query: 265 TDKGLEYFYGMKNKYGLQPGPEH----YTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320
              GL+    M      + G E+     + ++D+ G+ G +  A ++   +  + +   W
Sbjct: 246 LRLGLQVHCRM-----FRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTK-NVVSW 299

Query: 321 GALLGA 326
            A+L A
Sbjct: 300 TAILAA 305


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/523 (39%), Positives = 305/523 (58%), Gaps = 13/523 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE+ K +  T  ++++IS +  N     A+  F +M   GV  +          C   
Sbjct: 82  VFDETPKKSSTT--WSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKAC--- 136

Query: 61  GYLW---LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWN 117
           G+L    +G   HC+ VK G   D  VG+ L+ MY KCG +   R LFD++PE+ +++W+
Sbjct: 137 GFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWS 196

Query: 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
            MI GYAQ       L L+++     V  +  TF  V+  C+      +G  +       
Sbjct: 197 GMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKM 256

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
            F S+ F+ +ALI++Y++CG ++ A  +FD +P + +  W +++     H H +    LF
Sbjct: 257 SFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLF 316

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
           +EM   G++P+  +F+SVL ACSHAGL +KG EYF  M++ YG++P  EHY  +VDLLGR
Sbjct: 317 EEMGNVGMKPNFISFLSVLYACSHAGLVEKGREYFSLMRD-YGIEPETEHYASLVDLLGR 375

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
           AG+L EA+ +I+ M + P  +VWGALL  C+IHK+ E+A     ++++++  ++G +VLL
Sbjct: 376 AGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLL 435

Query: 358 SNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML 417
           SN Y+ A   +   R+R M+R+R +KK+ G S+VE   +VH F  GDR+H + VEIY  L
Sbjct: 436 SNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEKL 495

Query: 418 DKLENLVQE----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
           ++LE  +++     D +      + EE       HSE+LAIAFG+I   PG  I VMKNL
Sbjct: 496 EELEEEMEKAGYVADTSFVLRAVDGEEKNETIRYHSERLAIAFGLITFPPGRPIRVMKNL 555

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           R+CGDCH  IK +SK   R  IVRD  RFH F+ G CSC DYW
Sbjct: 556 RVCGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGKCSCGDYW 598



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 132/269 (49%), Gaps = 2/269 (0%)

Query: 66  GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
           G+  H   +KFGL     V + L+ +Y K     +  ++FD+ P+K   TW+++IS +AQ
Sbjct: 44  GLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQ 103

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
           N      L+ +R M + GV PD   +     +C  L    VG  V       G+  + F+
Sbjct: 104 NEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFV 163

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
            ++L++MYA+CG +  AR +FD MP + VVSW+ +I GY     G  A+ LF + L   +
Sbjct: 164 GSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDV 223

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
             +   F SV+  CS +   + G +  +G+  K          + ++ L  + G +  A 
Sbjct: 224 DVNDFTFSSVIRVCSSSTFLELG-KLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAY 282

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVE 334
           ++ + +     G +W ++L AC  H + +
Sbjct: 283 QVFDEIPTRNLG-LWNSMLIACAQHAHTQ 310


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/516 (39%), Positives = 297/516 (57%), Gaps = 19/516 (3%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V + A+ISGY  +   +EA+ LF +M   G + N  T+  +L  C     +      H 
Sbjct: 107 VVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQVHS 166

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + VK   +    VG+ L+ MY K G++   RK+FD +PE+  ++  A+ISGYAQ GL   
Sbjct: 167 LVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDE 226

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L+L+R++ S G+  + VTF  +L+S + L + + G +V   I          L N+LI+
Sbjct: 227 ALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSLID 286

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY++CG L  +R +FD MP+++ +SW A++ GYG HG G+  VQLF  M +  ++PD   
Sbjct: 287 MYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTEE-VKPDSVT 345

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            ++VLS CSH GL D+GL+ F  +  +        HY C++DLLGR+GQL +AL+LIE M
Sbjct: 346 LLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEHM 405

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
             EP  A+WG+LLGAC++H NV + E+   K++ +EP N G YV+LSNIY+ A     + 
Sbjct: 406 PFEPTPAIWGSLLGACRVHINVSVGEVVAQKLLDMEPGNAGNYVILSNIYAAAGMWKDVF 465

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----- 426
           RVR +M E  + K+P  S++ L   +H F   +R H +  +I   + ++   V+      
Sbjct: 466 RVRKLMLENTVTKEPAKSWIILDKVIHTFHSSERFHPRKKDINAKIKEVYVDVKAAGFVP 525

Query: 427 ------HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCH 480
                 HD     D +  E  L     HSEKLAI FG++NT PG  I VMKNLRIC DCH
Sbjct: 526 DLSCVLHD----VDDEQKERMLLG---HSEKLAITFGLMNTPPGLTIQVMKNLRICVDCH 578

Query: 481 LFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            F K VSK+  R+  +RD  RFH  K G C+C DYW
Sbjct: 579 NFAKFVSKVYGREISLRDKNRFHLLKDGACTCGDYW 614



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 146/306 (47%), Gaps = 38/306 (12%)

Query: 57  CVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
           CV+   L  G   H   VK        +   L+ +YV+CG++D  R + D +PE+ +++W
Sbjct: 51  CVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPERNVVSW 110

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ---Q 173
            AMISGY+Q+G     LEL+  M   G   +  T   VL+SC     H    +VEQ    
Sbjct: 111 TAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCP---VHQSIQQVEQVHSL 167

Query: 174 IQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVA 233
           +    F S+ F+ ++L++MY + GN+++AR +FD +P +  VS TAII GY   G  + A
Sbjct: 168 VVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEA 227

Query: 234 VQLFDEMLKSGIRPDGTAFVSVLSACS-----------HAGLTDKGLEYFYGMKN----- 277
           + LF ++  SG++ +   F ++L++ S           H  +  K L +F  ++N     
Sbjct: 228 LDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSLIDM 287

Query: 278 ----------KYGLQPGPEH----YTCMVDLLGRAGQLNEALELIESML--VEPDGAVWG 321
                     +      P+     +  M+   GR G   E ++L  +M   V+PD     
Sbjct: 288 YSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTEEVKPDSVTLL 347

Query: 322 ALLGAC 327
           A+L  C
Sbjct: 348 AVLSGC 353



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 4/165 (2%)

Query: 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK 212
             +++C    A   G +V   +    +    +L   LI +Y RCG L  AR + DGMP +
Sbjct: 46  AAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPER 105

Query: 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS-HAGLTDKGLEY 271
            VVSWTA+I GY   G    A++LF  ML++G + +     +VL++C  H  +  + +E 
Sbjct: 106 NVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSI--QQVEQ 163

Query: 272 FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPD 316
            + +  K   +      + ++D+ G++G + EA ++ + ML E D
Sbjct: 164 VHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFD-MLPERD 207


>gi|302780908|ref|XP_002972228.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
 gi|300159695|gb|EFJ26314.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
          Length = 487

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/491 (39%), Positives = 289/491 (58%), Gaps = 16/491 (3%)

Query: 38  MREQGVEINSVTMLCLLPICVDP-GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCG 96
           M+++GV  + +  +  L  C      L LG   H   ++ GL+ +  V   L+ MY K G
Sbjct: 1   MQQEGVLPDKICFVATLNACGGALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKAG 60

Query: 97  SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGV---CPDAVTFVG 153
            +D   ++F  +  K L++W A++S Y++  L    L+L+REM   G+    PD   F  
Sbjct: 61  CLDEATRVFRGLERKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFAF 120

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGF-GSNPFLNNALINMYARCGNLKKARAIFDGMPRK 212
           +L +CA L A + G    ++IQ  G+  S+  L   +INMY +CGNL+ A  +FDGM  +
Sbjct: 121 LLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSER 180

Query: 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF 272
             V+WT II GY  HGH E ++ +F  M + G +PDG + + VLS CSHAGL ++G ++F
Sbjct: 181 DTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFF 240

Query: 273 YGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKN 332
             +  ++G++PG +HY CM+DLLGR+G L  A  +I  M  +     W   L ACK+H +
Sbjct: 241 LDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFLAACKVHSD 300

Query: 333 VELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVE 392
            E  + A  KV++LEP+    YV LSNIY+ A   D + RVR  M+   L+KDPG S +E
Sbjct: 301 TERGKRAAEKVLELEPVPAA-YVSLSNIYAAAGEWDQVDRVRSAMKAMGLQKDPGRSSIE 359

Query: 393 LKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR-SDQK----NSEEHLNDTEV 447
           +  RVH F  GD++H +  EIY +   LE+L ++ +G+    D K    N  E   +  +
Sbjct: 360 VNSRVHEFWAGDKSHPRAAEIYGL---LESLTRQMEGSGYVPDTKLVLLNVSEEQKERLL 416

Query: 448 --HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHF 505
             HSEKLAIAFG+++T  G+ + ++KNLR+CGDCH   K VS+I  R+  +RD+ RFHHF
Sbjct: 417 CFHSEKLAIAFGLLSTPAGSSLRIIKNLRVCGDCHTAAKFVSRIAGREIFMRDSQRFHHF 476

Query: 506 KSGFCSCKDYW 516
           + G CSC DYW
Sbjct: 477 QDGHCSCGDYW 487



 Score = 42.4 bits (98), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 51/99 (51%), Gaps = 1/99 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           TV +  +ISGY  +    E++ +F +M++ G + + V++LC+L +C   G +  G     
Sbjct: 182 TVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFFL 241

Query: 72  -ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP 109
            I  +FG++       C++ +  + G ++    +  ++P
Sbjct: 242 DITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMP 280


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/555 (37%), Positives = 302/555 (54%), Gaps = 58/555 (10%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKM--REQGVEINSVTMLCLLPICVDPGYLWLGMCC 69
            V Y + I  +    L   A++L  +M     G+   + T+   LP C   G L +G   
Sbjct: 87  AVFYTSAIHAHSSRGLHRAALALLSEMLLSRHGLLPTAHTLSASLPAC---GCLAVGRAL 143

Query: 70  HCICVKFGLDLDFSVGNCLMTMY--------------------------------VKCGS 97
           H   VK  L  +  V   L+ MY                                 K G 
Sbjct: 144 HGYAVKLALSGEPYVATALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYAKMGQ 203

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
           +D  R LFD +P K L+ WNAM+ GY Q+G  +  L L+R+M   GV PD V+ V  LS+
Sbjct: 204 LDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSA 263

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLN----NALINMYARCGNLKKARAIFD---GMP 210
            A LG    G  +   +   G  +   LN     AL++MY +CG+L++A A+F    G  
Sbjct: 264 VAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGG 323

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270
            + VV+W A+I GY +HG    A++ F ++   G+ P    F+ VL+ACSH+GL D+G  
Sbjct: 324 DRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRA 383

Query: 271 YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
            F  M+ +YG+ P  EHY CMVDLLGRAG++ EA +L++SM  +PD A+W +LLGAC++H
Sbjct: 384 LFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGACRLH 443

Query: 331 KNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSY 390
           KN+ L +     ++     N+G YVLLSN+Y+ A     + RVR MMR   ++K+PG S 
Sbjct: 444 KNLALGQRVADYLVGNGLANSGTYVLLSNMYAAAGKWREVGRVRSMMRASGVQKEPGCSA 503

Query: 391 VELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTE---- 446
           VE+  RV  F+ GDR+H ++ EIY  L+++ ++ +      R    ++E  L+D +    
Sbjct: 504 VEVGRRVVEFVAGDRSHPRSAEIYAKLEEVNSIAR-----ARGHVPHTELVLHDLDDAAK 558

Query: 447 -----VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATR 501
                VHSEKLA+AFG+I+T P T I ++KNLR C DCH  +KLVS+   R+ + RD  R
Sbjct: 559 ERALAVHSEKLALAFGLISTPPRTGIKIVKNLRACADCHAVLKLVSEATGRKIVFRDRNR 618

Query: 502 FHHFKSGFCSCKDYW 516
           FHHF  G CSC DYW
Sbjct: 619 FHHFVDGSCSCGDYW 633



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 128/313 (40%), Gaps = 42/313 (13%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   V+  +D D +V   L   Y   G +D    L  + P+   + + + I  ++  GL 
Sbjct: 44  HAAAVRASVDQDKAVAFRLQRAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLH 103

Query: 130 THVLELYREM--KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
              L L  EM     G+ P A T    L +C   G  +VG  +            P++  
Sbjct: 104 RAALALLSEMLLSRHGLLPTAHTLSASLPAC---GCLAVGRALHGYAVKLALSGEPYVAT 160

Query: 188 ALINMY--------------------------------ARCGNLKKARAIFDGMPRKTVV 215
           AL+ MY                                A+ G L  AR +FD +PRK +V
Sbjct: 161 ALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLV 220

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG--LEYFY 273
            W A++ GY  HG    A++LF +ML+SG+ PD  + V  LSA +  G  + G  L  F 
Sbjct: 221 CWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFV 280

Query: 274 GMKNKYG-LQPGPEHYTCMVDLLGRAGQLNEALELIESM--LVEPDGAVWGALLGACKIH 330
               +   ++      T +VD+  + G L EA+ +   +    + D   W A++    +H
Sbjct: 281 ANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMH 340

Query: 331 KNVELAELAFGKV 343
                A  AFG++
Sbjct: 341 GRSREALEAFGQL 353


>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g15510, chloroplastic; Flags: Precursor
 gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
 gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
 gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 866

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/506 (40%), Positives = 299/506 (59%), Gaps = 7/506 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  +ISGY  N L  +A+  +  M +  V+ + +T+  +L  C   G L  G+  H +
Sbjct: 364 VSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKL 423

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K  L     V N L+ MY KC  +D    +F  +P K +I+W ++I+G   N      
Sbjct: 424 AIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEA 483

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L   R+MK + + P+A+T    L++CA +GA   G E+   +   G G + FL NAL++M
Sbjct: 484 LIFLRQMK-MTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDM 542

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y RCG +  A + F+   +K V SW  ++ GY   G G + V+LFD M+KS +RPD   F
Sbjct: 543 YVRCGRMNTAWSQFNSQ-KKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITF 601

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +S+L  CS + +  +GL YF  M++ YG+ P  +HY C+VDLLGRAG+L EA + I+ M 
Sbjct: 602 ISLLCGCSKSQMVRQGLMYFSKMED-YGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMP 660

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           V PD AVWGALL AC+IH  ++L EL+   + +L+  + GYY+LL N+Y++      + +
Sbjct: 661 VTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAK 720

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR MM+E  L  D G S+VE+KG+VH F+  D+ H QT EI  +L+     + E   TK 
Sbjct: 721 VRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKMSEVGLTKI 780

Query: 433 SDQKNSEE-HLNDTEV---HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
           S+  + +E  ++  E+   HSE+ AIAFG+INT PG  I V KNL +C +CH  +K +SK
Sbjct: 781 SESSSMDETEISRDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCHDTVKFISK 840

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKD 514
            V R+  VRDA  FHHFK G CSC D
Sbjct: 841 TVRREISVRDAEHFHHFKDGECSCGD 866



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 95/257 (36%), Positives = 142/257 (55%), Gaps = 1/257 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +N L+ GY       EA+ L+ +M    GV+ +  T  C+L  C     L  G   H   
Sbjct: 163 WNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHV 222

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           V++G +LD  V N L+TMYVKCG V   R LFD++P + +I+WNAMISGY +NG+    L
Sbjct: 223 VRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGL 282

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
           EL+  M+ L V PD +T   V+S+C  LG   +G ++   +   GF  +  + N+L  MY
Sbjct: 283 ELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMY 342

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
              G+ ++A  +F  M RK +VSWT +I GY  +   + A+  +  M +  ++PD     
Sbjct: 343 LNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVA 402

Query: 254 SVLSACSHAGLTDKGLE 270
           +VLSAC+  G  D G+E
Sbjct: 403 AVLSACATLGDLDTGVE 419



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 101/313 (32%), Positives = 156/313 (49%), Gaps = 6/313 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +NA+ISGY  N +  E + LF  MR   V+ + +T+  ++  C   G   LG   H  
Sbjct: 263 ISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAY 322

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +  G  +D SV N L  MY+  GS     KLF ++  K +++W  MISGY  N L    
Sbjct: 323 VITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKA 382

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           ++ YR M    V PD +T   VLS+CA LG    G+E+ +        S   + N LINM
Sbjct: 383 IDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINM 442

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++C  + KA  IF  +PRK V+SWT+II G  ++     A+ +F   +K  ++P+    
Sbjct: 443 YSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEAL-IFLRQMKMTLQPNAITL 501

Query: 253 VSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            + L+AC+  G    G E + + ++   GL     +   ++D+  R G++N A     S 
Sbjct: 502 TAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPN--ALLDMYVRCGRMNTAWSQFNSQ 559

Query: 312 LVEPDGAVWGALL 324
             + D   W  LL
Sbjct: 560 --KKDVTSWNILL 570



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 1/246 (0%)

Query: 19  ISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGL 78
           + G   N  + EA+ L   M+E  V ++    + L+ +C        G   + I +    
Sbjct: 66  LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMS 125

Query: 79  DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYRE 138
            L   +GN  + M+V+ G++     +F ++ E+ L +WN ++ GYA+ G     + LY  
Sbjct: 126 SLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHR 185

Query: 139 MKSL-GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG 197
           M  + GV PD  TF  VL +C  +   + G EV   +   G+  +  + NALI MY +CG
Sbjct: 186 MLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCG 245

Query: 198 NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257
           ++K AR +FD MPR+ ++SW A+I GY  +G     ++LF  M    + PD     SV+S
Sbjct: 246 DVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVIS 305

Query: 258 ACSHAG 263
           AC   G
Sbjct: 306 ACELLG 311



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 95/223 (42%), Gaps = 11/223 (4%)

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           + G   NG     ++L   M+ L V  D   FV ++  C    A   G +V     ++  
Sbjct: 66  LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMS 125

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
                L NA + M+ R GNL  A  +F  M  + + SW  ++GGY   G+ + A+ L+  
Sbjct: 126 SLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHR 185

Query: 240 MLK-SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
           ML   G++PD   F  VL  C       +G E    +  +YG +   +    ++ +  + 
Sbjct: 186 MLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVV-RYGYELDIDVVNALITMYVKC 244

Query: 299 GQLNEALELIESMLVEPDGAVWGALL------GACKIHKNVEL 335
           G +  A  L + M    D   W A++      G C  H+ +EL
Sbjct: 245 GDVKSARLLFDRM-PRRDIISWNAMISGYFENGMC--HEGLEL 284


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/528 (41%), Positives = 300/528 (56%), Gaps = 29/528 (5%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD  I      V +N+LI GY     +  A+ LF +M E+  +  S T+L      VD 
Sbjct: 169 VFDGMIDKD--VVLWNSLIDGYARCGEIDIALQLFEEMPER--DAFSWTVL------VDG 218

Query: 61  GYLWLGMCCHCICVKFGLDL----DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
               L  C      +   D     +    N ++  Y+K G  D   +LF Q+P   L+TW
Sbjct: 219 ----LSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTW 274

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
           N MI+GY  NG     ++++  M  LG  P   T V VLS+ + L     G  +   ++ 
Sbjct: 275 NLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEK 334

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
           NGF  +  L  +LI MYA+CG ++ A  +F  + +K V  WTAII G GIHG    A+ L
Sbjct: 335 NGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALAL 394

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           F EM K+G++P+   F+ VL+AC+HAGL D G +YF  M N+Y ++P  EHY C+VD+L 
Sbjct: 395 FLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILC 454

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356
           RAG L EA   IE+M + P+  +W +LLG  + H  +++ E A  +VI++ P   G Y+L
Sbjct: 455 RAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYIL 514

Query: 357 LSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY-- 414
           LSN+Y+ +   + +  VR MM +R  +KDPG S VE KG +H F+VGD +H QT EIY  
Sbjct: 515 LSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAK 574

Query: 415 --RMLDKLENLVQEHDGTKR----SDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIV 468
              M +KL+ +    D T+       +K  E  L   E HSE+LAIAFG+IN  PG  I 
Sbjct: 575 MSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAEL---ENHSERLAIAFGLINVKPGIPIR 631

Query: 469 VMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +MKNLR+C DCH   KL+SKI  R+ IVRD  RFHHFK+G CSC DYW
Sbjct: 632 IMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 679



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/371 (27%), Positives = 173/371 (46%), Gaps = 13/371 (3%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N +I  YV N    + + LF ++  + +  N  T+ C++  C   G +  G   H + +
Sbjct: 81  WNTIIKCYVENQFSHDGIVLFHELVHEYLPDN-FTLPCVIKGCARLGVVQEGKQIHGLAL 139

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K G   D  V   L+ MY KCG +D  RK+FD + +K ++ WN++I GYA+ G     L+
Sbjct: 140 KIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQ 199

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+ EM       DA ++  ++   +  G      ++  Q+      S     NA+IN Y 
Sbjct: 200 LFEEMPE----RDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVS----WNAMINGYM 251

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           + G+   A  +F  MP   +V+W  +I GY ++G    AV++F  MLK G RP     VS
Sbjct: 252 KSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVS 311

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VLSA S   +  KG  + +    K G +      T ++++  + G +  AL +  ++  +
Sbjct: 312 VLSAVSGLAVLGKG-RWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKK 370

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMR 372
             G  W A++    IH     A   F ++ K  L+P    +  +L+         DG   
Sbjct: 371 KVGH-WTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQY 429

Query: 373 VRMMMRERRLK 383
             MMM E +++
Sbjct: 430 FDMMMNEYKIE 440



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 129/265 (48%), Gaps = 13/265 (4%)

Query: 84  VGNCLMTMYV--KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKS 141
           V + L+ +Y   K   + Y R +FD++  + LI WN +I  Y +N  +   + L+ E+  
Sbjct: 47  VSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVH 106

Query: 142 LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKK 201
               PD  T   V+  CA LG    G ++       GFGS+ F+  +L+NMY++CG +  
Sbjct: 107 -EYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDC 165

Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261
           AR +FDGM  K VV W ++I GY   G  ++A+QLF+EM +     D  ++  ++   S 
Sbjct: 166 ARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPER----DAFSWTVLVDGLSK 221

Query: 262 AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWG 321
            G  +   + F  M  +  +      +  M++   ++G  + ALEL   M +  D   W 
Sbjct: 222 CGKVESARKLFDQMPCRNLVS-----WNAMINGYMKSGDFDSALELFYQMPIW-DLVTWN 275

Query: 322 ALLGACKIHKNVELAELAFGKVIKL 346
            ++   +++     A   F  ++KL
Sbjct: 276 LMIAGYELNGQFMDAVKMFFMMLKL 300


>gi|302804779|ref|XP_002984141.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
 gi|300147990|gb|EFJ14651.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
          Length = 487

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/491 (39%), Positives = 289/491 (58%), Gaps = 16/491 (3%)

Query: 38  MREQGVEINSVTMLCLLPICVDP-GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCG 96
           M+++GV  + +  +  L  C      L LG   H   ++ GL+ +  V   L+ MY K G
Sbjct: 1   MQQEGVLPDKICFVATLNACGGALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKAG 60

Query: 97  SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGV---CPDAVTFVG 153
            +D   ++F  +  K L++W A++S Y++  L    L+L+REM   G+    PD   F  
Sbjct: 61  CLDEATRVFRGLGRKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFAF 120

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGF-GSNPFLNNALINMYARCGNLKKARAIFDGMPRK 212
           +L +CA L A + G    ++IQ  G+  S+  L   +INMY +CGNL+ A  +FDGM  +
Sbjct: 121 LLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSER 180

Query: 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYF 272
             V+WT II GY  HGH E ++ +F  M + G +PDG + + VLS CSHAGL ++G ++F
Sbjct: 181 DTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFF 240

Query: 273 YGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKN 332
             +  ++G++PG +HY CM+DLLGR+G L  A  +I  M  +     W   L ACK+H +
Sbjct: 241 LDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFLAACKVHSD 300

Query: 333 VELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVE 392
            E  + A  KV++LEP+    YV LSNIY+ A   D + RVR  M+   L+KDPG S +E
Sbjct: 301 TERGKRAAEKVLELEPVPAA-YVSLSNIYAAAGEWDQVDRVRSAMKAMGLQKDPGRSSIE 359

Query: 393 LKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR-SDQK----NSEEHLNDTEV 447
           +  RVH F  GD++H +  EIY +   LE+L ++ +G+    D K    N  E   +  +
Sbjct: 360 VNSRVHEFWAGDKSHPRAAEIYGL---LESLTRQMEGSGYVPDTKLVLLNVSEEQKERLL 416

Query: 448 --HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHF 505
             HSEKLAIAFG+++T  G+ + ++KNLR+CGDCH   K VS+I  R+  +RD+ RFHHF
Sbjct: 417 CFHSEKLAIAFGLLSTPAGSSLRIIKNLRVCGDCHTAAKFVSRIAGREIFMRDSQRFHHF 476

Query: 506 KSGFCSCKDYW 516
           + G CSC DYW
Sbjct: 477 QDGHCSCGDYW 487



 Score = 42.4 bits (98), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 51/99 (51%), Gaps = 1/99 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           TV +  +ISGY  +    E++ +F +M++ G + + V++LC+L +C   G +  G     
Sbjct: 182 TVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFFL 241

Query: 72  -ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP 109
            I  +FG++       C++ +  + G ++    +  ++P
Sbjct: 242 DITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMP 280


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/442 (43%), Positives = 271/442 (61%), Gaps = 14/442 (3%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+ MY+KCG++D  ++LFD+  ++ L+ +N ++S YA+ GLA   L +  EM   G  
Sbjct: 230 NALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPR 289

Query: 146 PDAVTFVGVLSSCAHL-----GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
           PD VT +  +S+ A L     G    G  V   I+ NG   +  LN AL++M+ARCG+ +
Sbjct: 290 PDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQ 349

Query: 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
            A  +F+ M  + V +WTA IG   + G+GE A  LF++ML  G++PD   FV VL+ACS
Sbjct: 350 SAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACS 409

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320
           H G  ++GL  F  M++ +G+ P  EHY CMVDLLGRAG L EA +LI+SM +EP+  VW
Sbjct: 410 HGGQVEQGLHIFSLMED-HGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVW 468

Query: 321 GALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380
           G+LL AC++HKNVE+A  A  ++ +L P   G +VLLSNIY+ A     + RVR+ +RE+
Sbjct: 469 GSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREK 528

Query: 381 RLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEE 440
            ++K PG S V++ G +H F  GD +H +   I  ML ++    +  D     D  N   
Sbjct: 529 GVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMN--CRFSDAGHIPDLSNVLL 586

Query: 441 HLNDTEV------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQF 494
            +++ E       HSEKLAIAFG+I T     I V+KNLR+C DCH F K+ S I +R+ 
Sbjct: 587 DVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKMASIIYNREI 646

Query: 495 IVRDATRFHHFKSGFCSCKDYW 516
           IVRD  RFH F+ G CSC DYW
Sbjct: 647 IVRDNNRFHFFRQGLCSCCDYW 668



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 151/354 (42%), Gaps = 58/354 (16%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +F E ++S       N+LI GY    L  EA+ L+ +M   GV  N  T   +L  C   
Sbjct: 85  LFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKI 144

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
                G+  H   VK GL+ D  + NCL+  Y +CG +D+G K+F+ + E+ +++W ++I
Sbjct: 145 AAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLI 204

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GYA+       + L+ EM                                         
Sbjct: 205 CGYARGDRPKEAVSLFFEML---------------------------------------- 224

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            N  + NAL++MY +CG +  A+ +FD    + +V +  I+  Y   G    A+ + DEM
Sbjct: 225 -NKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEM 283

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK----------NKYGLQPGPEHYTC 290
           L+ G RPD    +S +SA +        ++ FYG             K G+       T 
Sbjct: 284 LQQGPRPDRVTMLSAISASAQL------VDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTA 337

Query: 291 MVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI 344
           +VD+  R G    A+++   M  E D + W A +G   +  N E A   F +++
Sbjct: 338 LVDMFARCGDPQSAMQVFNKM-TERDVSAWTAAIGTMAMEGNGEGATGLFNQML 390



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 139/316 (43%), Gaps = 38/316 (12%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCG-------SVDYGRKLFDQVPEK-----GLITWN 117
           HC   K GLD   S     +T  V  G       S+DY RK F+   E       L   N
Sbjct: 45  HCQITKNGLDQIPST----LTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDALFMLN 100

Query: 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
           ++I GY+  GL    + LY  M  LGV P+  TF  VLS C  + A   G++V   +   
Sbjct: 101 SLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKM 160

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
           G   + F+ N LI+ YA CG++     +F+GM  + VVSWT++I GY      + AV LF
Sbjct: 161 GLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLF 220

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
            EML   +     A V +   C   G  D     F    ++  +      Y  ++    R
Sbjct: 221 FEMLNKVMV---NALVDMYMKC---GAIDAAKRLFDECVDRNLVL-----YNTILSNYAR 269

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
            G   EAL +++ ML +        +L A  I  + +L +L +GKV        GY+V  
Sbjct: 270 QGLAREALAILDEMLQQGPRPDRVTMLSA--ISASAQLVDLFYGKVCH------GYWV-- 319

Query: 358 SNIYSEARNLDGIMRV 373
            + Y E   +   MR+
Sbjct: 320 -HTYIEKNGIPCDMRL 334


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/523 (39%), Positives = 304/523 (58%), Gaps = 13/523 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE+ K +  T  ++++IS +  N     A+  F +M   GV  +          C   
Sbjct: 82  VFDETPKKSSTT--WSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKAC--- 136

Query: 61  GYLW---LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWN 117
           G+L    +G   HC+ VK G   D  VG+ L+ MY KCG +   R LFD++PE+ +++W+
Sbjct: 137 GFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWS 196

Query: 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
            MI GYAQ       L L+++     V  +  TF  V+  C+      +G  +       
Sbjct: 197 GMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKM 256

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
            F S+ F+ +ALI++Y++CG ++ A  +FD +P + +  W +++     H H +    LF
Sbjct: 257 SFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLF 316

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
           +EM   G++P+   F+SVL ACSHAGL +KG EYF  M++ YG++P  EHY  +VDLLGR
Sbjct: 317 EEMGNVGMKPNFIXFLSVLYACSHAGLVEKGREYFSLMRD-YGIEPETEHYASLVDLLGR 375

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
           AG+L EA+ +I+ M + P  +VWGALL  C+IHK+ E+A     ++++++  ++G +VLL
Sbjct: 376 AGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLL 435

Query: 358 SNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML 417
           SN Y+ A   +   R+R M+R+R +KK+ G S+VE   +VH F  GDR+H + VEIY  L
Sbjct: 436 SNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEKL 495

Query: 418 DKLENLVQE----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
           ++LE  +++     D +      + EE       HSE+LAIAFG+I   PG  I VMKNL
Sbjct: 496 EELEEEMEKAGYVADTSFVLRAVDGEEKNETIRYHSERLAIAFGLITFPPGRPIRVMKNL 555

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           R+CGDCH  IK +SK   R  IVRD  RFH F+ G CSC DYW
Sbjct: 556 RVCGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGKCSCGDYW 598



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 132/269 (49%), Gaps = 2/269 (0%)

Query: 66  GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
           G+  H   +KFGL     V + L+ +Y K     +  ++FD+ P+K   TW+++IS +AQ
Sbjct: 44  GLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQ 103

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
           N      L+ +R M + GV PD   +     +C  L    VG  V       G+  + F+
Sbjct: 104 NEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFV 163

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
            ++L++MYA+CG +  AR +FD MP + VVSW+ +I GY     G  A+ LF + L   +
Sbjct: 164 GSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDV 223

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
             +   F SV+  CS +   + G +  +G+  K          + ++ L  + G +  A 
Sbjct: 224 DVNDFTFSSVIRVCSSSTFLELG-KLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAY 282

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVE 334
           ++ + +     G +W ++L AC  H + +
Sbjct: 283 QVFDEIPTRNLG-LWNSMLIACAQHAHTQ 310


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/504 (37%), Positives = 289/504 (57%), Gaps = 6/504 (1%)

Query: 18  LISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFG 77
           +IS Y  ++   +A  LF ++    V  N  ++  +L  C +   L  G   H   +K G
Sbjct: 335 MISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIG 394

Query: 78  LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYR 137
            + D  VGN LM  Y KC  +D   K+F  + +   ++WN ++ G++Q+GL    L ++ 
Sbjct: 395 HESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFC 454

Query: 138 EMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG 197
           EM++  +    VT+  VL +CA   +     ++   I+ + F ++  + N+LI+ YA+CG
Sbjct: 455 EMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCG 514

Query: 198 NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257
            ++ A  +F  +  + ++SW AII GY +HG    A++LFD M KS +  +   FV++LS
Sbjct: 515 YIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLS 574

Query: 258 ACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDG 317
            CS  GL + GL  F  M+  +G++P  EHYTC+V LLGRAG+LN+AL+ I  +   P  
Sbjct: 575 VCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSA 634

Query: 318 AVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMM 377
            VW ALL +C IHKNV L   +  K++++EP +   YVLLSN+Y+ A +LD +  +R  M
Sbjct: 635 MVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSM 694

Query: 378 RERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS---- 433
           R   ++K PG S+VE+KG +H F VG  +H     I  ML+ L NL    +G        
Sbjct: 695 RNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWL-NLKTSREGYIPDINVV 753

Query: 434 -DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDR 492
               + E+      VHSE+LA+A+G++ T PG  I ++KNLR C DCH    ++SKIV R
Sbjct: 754 LHDVDKEQKTRMLWVHSERLALAYGLVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKR 813

Query: 493 QFIVRDATRFHHFKSGFCSCKDYW 516
           + IVRD  RFHHF+ G CSC DYW
Sbjct: 814 EIIVRDINRFHHFEDGKCSCGDYW 837



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 156/355 (43%), Gaps = 16/355 (4%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V + A++S Y  N     A  +F KMR  G + N   +  +L   V    + LG   H 
Sbjct: 228 AVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHG 287

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K   D +  VG  L+ MY KCG +   R  F+ +P   +I  + MIS YAQ+     
Sbjct: 288 CAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQ 347

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
             EL+  +    V P+  +   VL +C ++     G ++       G  S+ F+ NAL++
Sbjct: 348 AFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMD 407

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
            YA+C ++  +  IF  +     VSW  I+ G+   G GE A+ +F EM  + +      
Sbjct: 408 FYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVT 467

Query: 252 FVSVLSACS------HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
           + SVL AC+      HAG     +E       K            ++D   + G + +AL
Sbjct: 468 YSSVLRACASTASIRHAGQIHCSIE-------KSTFNNDTVIGNSLIDTYAKCGYIRDAL 520

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
           ++ +  L+E D   W A++    +H     A   F ++ K  +E  +  +  LLS
Sbjct: 521 KVFQH-LMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLS 574



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 135/299 (45%), Gaps = 1/299 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  L+  +        A +LF ++R +G E+N   +  +L + +      L    H  
Sbjct: 128 VSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSC 187

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K G D +  VG+ L+  Y  C  V     +F+ +  K  + W AM+S Y++N    + 
Sbjct: 188 AWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENA 247

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
             ++ +M+  G  P+      VL +   L +  +G  +          + P +  AL++M
Sbjct: 248 FRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDM 307

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG++K AR  F+ +P   V+  + +I  Y      E A +LF  +++S + P+  + 
Sbjct: 308 YAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSL 367

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            SVL AC++    D G +  +    K G +        ++D   +   ++ +L++  S+
Sbjct: 368 SSVLQACTNMVQLDFG-KQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSL 425



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 127/269 (47%), Gaps = 7/269 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N ++ G+  + L  EA+S+F +M+   +    VT   +L  C     +      HC 
Sbjct: 431 VSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCS 490

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K   + D  +GN L+  Y KCG +    K+F  + E+ +I+WNA+ISGYA +G A   
Sbjct: 491 IEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADA 550

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           LEL+  M    V  + +TFV +LS C+  G  + GL +   ++ +  G  P + +   ++
Sbjct: 551 LELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRID-HGIKPSMEHYTCIV 609

Query: 191 NMYARCGNLKKARAIFDGMPR-KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP-D 248
            +  R G L  A      +P   + + W A++    IH +  VA+  F       I P D
Sbjct: 610 RLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKN--VALGRFSAEKILEIEPQD 667

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
            T +V + +  + AG  D+       M+N
Sbjct: 668 ETTYVLLSNMYAAAGSLDQVALLRKSMRN 696



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 107/227 (47%), Gaps = 5/227 (2%)

Query: 80  LDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM 139
           LD    N L+ MY K G +   R+LFD++PE+ ++++  ++  +AQ G       L+R +
Sbjct: 94  LDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRL 153

Query: 140 KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNL 199
           +  G   +      +L     + A  +   V       G   N F+ + LI+ Y+ C  +
Sbjct: 154 RWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLV 213

Query: 200 KKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSA- 258
             A  +F+G+ RK  V WTA++  Y  +   E A ++F +M  SG +P+  A  SVL A 
Sbjct: 214 SDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAA 273

Query: 259 -CSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
            C  + +  KG+   +G   K      P     ++D+  + G + +A
Sbjct: 274 VCLPSVVLGKGI---HGCAIKTLNDTEPHVGGALLDMYAKCGDIKDA 317



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 56/130 (43%), Gaps = 9/130 (6%)

Query: 122 GYAQNGLATHVLELYREMKSLGVCP-----DAVTFVGVLSSCAHLGAHSVGLEVEQQI-Q 175
           G+A    A   LE   E+ SL + P     D+      L  C   G    G  V   + +
Sbjct: 30  GFAAYAAALQWLE--DELTSLAILPSVPGVDSFACARQLQGCIARGDARGGRAVHGHVVR 87

Query: 176 ANGFGS-NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
             G G  + F  N L+NMY + G L  AR +FD MP + +VS+  ++  +   G  E A 
Sbjct: 88  RGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAA 147

Query: 235 QLFDEMLKSG 244
            LF  +   G
Sbjct: 148 ALFRRLRWEG 157


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/503 (39%), Positives = 296/503 (58%), Gaps = 9/503 (1%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKM--REQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           +NA +     NS    A+  F            +  T   +L  C    ++  G   H +
Sbjct: 58  HNATLKALAQNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKACAGLAHVVNGQKIHAM 117

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQ--VPEKGLITWNAMISGYAQNGLAT 130
             K G + +  V N L+ MY K G +   R LFD+  V ++ ++ WNAMI+GYAQN   +
Sbjct: 118 VTKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYS 177

Query: 131 HVLELYREMKSLG-VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
             +E++R M+  G V P+ VT V VL +CAHLGA  +G  ++  I         FL NAL
Sbjct: 178 DAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMALGLFLGNAL 237

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
            +MYA+CG + +AR +F+ M  + V+SW+ II G  ++GH + A   F EML  G +P+ 
Sbjct: 238 ADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPND 297

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
             F+ +L+AC+HAGL  KGL  F  M  +YG+ P  EHY C+VDLL RAG+L++A ++I 
Sbjct: 298 VVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMIS 357

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDG 369
           SM ++P+  +WGALLG C+I+++    +     +++L+  ++G YV L+N+YS    LD 
Sbjct: 358 SMPMKPNVIIWGALLGGCRIYRDSGRGQRVVQHILELDSDHSGSYVYLANVYSSMGRLDD 417

Query: 370 IMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDG 429
             + R+ MRE  + K PG S++E+   VH F +GD +H ++ +IY M+ +L   ++    
Sbjct: 418 AAKCRLRMRENGVLKTPGCSWIEVDNTVHEFFMGDLSHPESNKIYSMIRELMWKMKLAGY 477

Query: 430 TKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
             ++D      + EE  +   +HSEKLAIAFG+I+TS GT I V+KNLRIC DCH   K+
Sbjct: 478 KPKTDLVVHSIDEEEKEDALSIHSEKLAIAFGLISTSEGTTIRVVKNLRICNDCHDAAKI 537

Query: 486 VSKIVDRQFIVRDATRFHHFKSG 508
           +S IV R+ IVRD +RFHHFK G
Sbjct: 538 ISGIVKREIIVRDRSRFHHFKDG 560



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 126/242 (52%), Gaps = 8/242 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICVD 59
           +FDE        VC+NA+I+GY  N   S+A+ +F  M++  GV  N VT++ +LP C  
Sbjct: 149 LFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAH 208

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
            G L LG        +  + L   +GN L  MY KCG +   R++F+++ E+ +I+W+ +
Sbjct: 209 LGALDLGKWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSII 268

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I G A  G A      + EM   G  P+ V F+G+L++C H G    GL     +    +
Sbjct: 269 ICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKE-Y 327

Query: 180 GSNPFLNN--ALINMYARCGNLKKARAIFDGMPRK-TVVSWTAIIGG---YGIHGHGEVA 233
           G +P + +   ++++ +R G L KA  +   MP K  V+ W A++GG   Y   G G+  
Sbjct: 328 GVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRV 387

Query: 234 VQ 235
           VQ
Sbjct: 388 VQ 389



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 4/140 (2%)

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS--GIR 246
           LI   A   N+++A  IF  +    + +  A +     + H   A+Q F+  + S     
Sbjct: 30  LIGACADHANVRQAALIFAHLASPNIFAHNATLKALAQNSHWFHAIQFFNHQVSSPNAPN 89

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           PD   F SVL AC+       G +  + M  K G +        ++D+  +AG L  A  
Sbjct: 90  PDEFTFTSVLKACAGLAHVVNG-QKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARH 148

Query: 307 LIESMLVEPDGAV-WGALLG 325
           L + M V     V W A++ 
Sbjct: 149 LFDEMFVRDRNVVCWNAMIA 168


>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
 gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/522 (36%), Positives = 299/522 (57%), Gaps = 10/522 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE        V +  +ISGYV +    EA  LF  MRE+  +    T   ++      
Sbjct: 189 LFDEMPARN--AVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCGPRTFATMIRASAGL 246

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             ++ G   H   +K GL  D  V   L+ MY KCGS++    +FD++P+K ++ WN++I
Sbjct: 247 EIIFPGRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSII 306

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GYA +G +   L+LY EM+  GV  D  TF  ++  C+ L + +   +V   +  NGFG
Sbjct: 307 AGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASLVRNGFG 366

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            +   N AL++ Y++ G +  AR +FD M  + ++SW A+I GYG HGHGE A+ +F++M
Sbjct: 367 LDVVANTALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEAIDMFEKM 426

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           L+ G+ P+   F++VLSACS +GL ++G E F  M   + ++P   H+ CM++LLGR G 
Sbjct: 427 LREGMMPNHVTFLAVLSACSISGLFERGWEIFQSMTRDHKVKPRAMHFACMIELLGREGL 486

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L+EA  LI     +P   +W ALL AC++H N+EL + A  K+  +EP     Y++L NI
Sbjct: 487 LDEAYALIRKAPFQPTANMWAALLRACRVHGNLELGKFAAEKLYGMEPEKLSNYIVLLNI 546

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+ +  L     V   ++ + L+  P  S++E+  + H F+ GD++H Q  ++   +D+L
Sbjct: 547 YNSSGKLKEAADVFQTLKRKGLRMLPACSWIEVNNQPHAFLSGDKHHVQIEKVVGKVDEL 606

Query: 421 E------NLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLR 474
                    V E       D   +EE +     HSEKLAIA+G++NT   T + ++++ R
Sbjct: 607 MLNISKLGYVPEEQNFMLPDVDENEEKIR--MYHSEKLAIAYGLLNTLEKTPLQIVQSHR 664

Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           IC DCH  IKL++ I  R+ ++RDA+RFHHF+ G CSC DYW
Sbjct: 665 ICSDCHSVIKLIAMITKREIVIRDASRFHHFRDGSCSCGDYW 706



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 146/288 (50%), Gaps = 6/288 (2%)

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           V  G + D  + N ++ M+VKCG +    +LFD++P +  ++W  +ISGY  +G      
Sbjct: 159 VDNGFEPDQYMRNRVLLMHVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAF 218

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
            L+  M+         TF  ++ + A L     G ++       G G + F++ ALI+MY
Sbjct: 219 RLFILMREEFYDCGPRTFATMIRASAGLEIIFPGRQLHSCAIKAGLGQDIFVSCALIDMY 278

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
           ++CG+L+ A  +FD MP KT+V W +II GY +HG+ E A+ L+ EM  SG++ D   F 
Sbjct: 279 SKCGSLEDAHCVFDEMPDKTIVGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFS 338

Query: 254 SVLSACSHAGLTDKGLEYFYGM-KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            ++  CS      +  +    + +N +GL       T +VD   + G++++A  + + M 
Sbjct: 339 IIIRICSRLASVARAKQVHASLVRNGFGLDVVAN--TALVDFYSKWGKVDDARHVFDRMS 396

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
              +   W AL+     H + E A   F K+++  + P +  +  +LS
Sbjct: 397 CR-NIISWNALIAGYGNHGHGEEAIDMFEKMLREGMMPNHVTFLAVLS 443


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/549 (37%), Positives = 309/549 (56%), Gaps = 41/549 (7%)

Query: 8   STHLTV-CYNALISGYVL----NSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGY 62
           ST  TV  +N  I G+       SL+S +V LF +M    +  N+ T   L   C +   
Sbjct: 49  STPPTVFLFNTTIRGFSRARRPGSLLS-SVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVA 107

Query: 63  LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQ--------------- 107
             LG   H + +K   ++D  V N ++  Y  CG ++  R +FD+               
Sbjct: 108 FDLGRQFHGMVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDG 167

Query: 108 ----------------VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTF 151
                           + E+  I+WN MISGYAQNG     L L+REM+ L   P++   
Sbjct: 168 CIRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAIL 227

Query: 152 VGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR 211
           V VLS+C+ LGA   G  V   I       +  L+ ALI+MYA+CG++  A   F    +
Sbjct: 228 VSVLSACSQLGALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRK 287

Query: 212 KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEY 271
           + V ++TA I G  ++G  E A+QLF++M   GI PDG ++++VL ACSHAG  +KG  Y
Sbjct: 288 RDVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHY 347

Query: 272 FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHK 331
           F  M + +G++P  +HY CMVDLLGRAG L EA + + SM ++PD  +WGALLGAC+++ 
Sbjct: 348 FASMSDVHGIRPELDHYACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYG 407

Query: 332 NVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYV 391
           N E+ +     +++ +  + G Y+LLSNIY+E+   +   +VR  MR R++ + PG S +
Sbjct: 408 NAEMGQRVGSLLVESDQNHDGRYILLSNIYAESMKGEDAEQVRKTMRRRKVDRVPGCSLI 467

Query: 392 ELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE--HDGTKRSDQKNSEEHLNDTEV-- 447
           E+ G VH F  GDR+H +T EIY M +++   +++  +    R+   + EE   +  +  
Sbjct: 468 EVAGFVHEFFSGDRSHEKTEEIYLMWEEIVKEIKKFGYREETRAVVFDVEEEEKEAVIGH 527

Query: 448 HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKS 507
           HSEKLA+AFG + T  G+ + ++KN+RIC DCH  IKLVSK+  R+  +RD   FHHF+ 
Sbjct: 528 HSEKLAVAFGFLYTKSGSTLRIVKNIRICSDCHYAIKLVSKVFKRKIAIRDRKCFHHFEE 587

Query: 508 GFCSCKDYW 516
           G CSCKDYW
Sbjct: 588 GLCSCKDYW 596



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 115/301 (38%), Gaps = 70/301 (23%)

Query: 96  GSVDYGRKLFDQVPEKGLI-TWNAMISGYAQ----NGLATHVLELYREMKSLGVCPDAVT 150
           G +DY   L  +      +  +N  I G+++      L + VL L+  M  L + P+  T
Sbjct: 36  GDIDYALLLLLRTSTPPTVFLFNTTIRGFSRARRPGSLLSSVL-LFVRMGVLSLAPNNFT 94

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD--- 207
           F  +   C++  A  +G +    +  N F  + F+ N++I  Y+ CG L  AR +FD   
Sbjct: 95  FTFLFQGCSNCVAFDLGRQFHGMVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESS 154

Query: 208 ----------------------------GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
                                        M  +  +SW  +I GY  +G  + A+ LF E
Sbjct: 155 ELDVVSWNSMIDGCIRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFRE 214

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKG--LEYFYGMK-------------NKYG---- 280
           M      P+    VSVLSACS  G  D G  +  + G K             + Y     
Sbjct: 215 MQMLDQEPNSAILVSVLSACSQLGALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGS 274

Query: 281 -----------LQPGPEHYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGA 326
                       +     YT  +  L   G   EAL+L E M    + PDG  + A+L A
Sbjct: 275 IDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCA 334

Query: 327 C 327
           C
Sbjct: 335 C 335


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/520 (38%), Positives = 290/520 (55%), Gaps = 7/520 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  +     V + +LI+GY  N +  EA+ L   M +   + N  T   LL      
Sbjct: 108 VFDEMRRKD--MVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAH 165

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
               +G   H + VK     D  VG+ L+ MY +CG +D    +FD++  K  ++WNA+I
Sbjct: 166 ADSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALI 225

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SG+A+ G     L  + EM   G      T+  V SS A LGA   G  V   +  +   
Sbjct: 226 SGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQK 285

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
              F  N L++MYA+ G++  AR +FD +  K +V+W  ++  +  +G G+ AV  F+EM
Sbjct: 286 MTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEM 345

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            KSGI  +   F+ +L+ACSH GL  +G  YF  MK +Y L+P  +H+  +V LLGRAG 
Sbjct: 346 RKSGIYLNQVTFLCILTACSHGGLVKEGKRYFEMMK-EYDLEPEIDHFVTVVALLGRAGL 404

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           LN AL  I  M +EP  AVWGALL AC++HKN ++ + A   V +L+P ++G  VLL NI
Sbjct: 405 LNFALVFIFKMPIEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNI 464

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+     D   RVR +M+   +KK+P  S+VE++  VH+F+  D  H +  EIY+M  ++
Sbjct: 465 YASTGQWDAAARVRRIMKTTGVKKEPACSWVEMENSVHMFVANDDTHPRAEEIYKMWGQI 524

Query: 421 ENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
              +++       D    + + +E   + + HSEKLA+AF +I    G  I +MKN+RIC
Sbjct: 525 SKKIRKEGYVPDMDYVLLRVDDQEREANLQYHSEKLALAFALIEMPAGATIRIMKNIRIC 584

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           GDCH   K +SK+  R+ +VRD  RFHHF +G CSC DYW
Sbjct: 585 GDCHSAFKYISKVFGREIVVRDTNRFHHFSNGSCSCADYW 624



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 126/246 (51%), Gaps = 2/246 (0%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140
           D  + N L+ +Y KCGSV   RK+FD++  K +++W ++I+GYAQN +    + L   M 
Sbjct: 85  DAFLDNSLIHLYCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGML 144

Query: 141 SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
                P+  TF  +L +        +G ++        +  + ++ +AL++MYARCG + 
Sbjct: 145 KGRFKPNGFTFASLLKAAGAHADSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMD 204

Query: 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
            A A+FD +  K  VSW A+I G+   G GE A+  F EML++G       + SV S+ +
Sbjct: 205 MATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIA 264

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320
             G  ++G ++ +    K   +        ++D+  ++G + +A ++ +  + + D   W
Sbjct: 265 RLGALEQG-KWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDR-VDDKDLVTW 322

Query: 321 GALLGA 326
             +L A
Sbjct: 323 NTMLTA 328



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 110/221 (49%), Gaps = 8/221 (3%)

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
           + P    +   +++CA         +V   + ++ F  + FL+N+LI++Y +CG++ +AR
Sbjct: 47  LAPTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEAR 106

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC-SHA 262
            +FD M RK +VSWT++I GY  +   E A+ L   MLK   +P+G  F S+L A  +HA
Sbjct: 107 KVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHA 166

Query: 263 GLTDKGL-EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWG 321
              D G+    + +  K          + ++D+  R G ++ A  + +  L   +G  W 
Sbjct: 167 ---DSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDK-LDSKNGVSWN 222

Query: 322 ALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNI 360
           AL+       + E A + F ++++   E  +  Y  + S+I
Sbjct: 223 ALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSI 263


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/532 (37%), Positives = 300/532 (56%), Gaps = 22/532 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD   ++    V +N ++S YV N    +A+ L+ +M+   +  + VT + LL  C   
Sbjct: 304 VFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRMQ---LRADKVTYVSLLSACSSA 360

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             + LG   H   V   L+ +  VGN L++MY KCGS    R +FD++ ++ +I+W  +I
Sbjct: 361 EDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTII 420

Query: 121 SGYAQNGLATHVLELYREM-------KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQ 173
           S Y +  L      L+++M        S  V PDA+ FV +L++CA + A   G  V +Q
Sbjct: 421 SAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQ 480

Query: 174 IQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM-PRKTVVSWTAIIGGYGIHGHGEV 232
             + G  S+  +  A++N+Y +CG +++ R IFDG+  R  V  W A+I  Y   G    
Sbjct: 481 AASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNAMIAVYAQFGQSHE 540

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY-GLQPGPEHYTCM 291
           A++LF  M   G+RPD  +FVS+L ACSH GL D+G  YF  M  +Y  +    +H+ C+
Sbjct: 541 ALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCV 600

Query: 292 VDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351
            DLLGR G+L EA E +E + V+PD   W +LL AC+ H++++ A+    K+++LEP   
Sbjct: 601 ADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCA 660

Query: 352 GYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTV 411
             YV LSNIY+E +    + +VR  M E+ +KK+ G S +E+   +H F  GD  H +  
Sbjct: 661 TGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNR 720

Query: 412 EIYRMLDKLENLVQEHDGTKRS-------DQKNSEEHLNDTEVHSEKLAIAFGIINTSPG 464
           EI   L KL + ++E      +       D++  E  L     HSE+LAIA G+I+T  G
Sbjct: 721 EIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFS---HSERLAIALGLISTPLG 777

Query: 465 TEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           T + V KNLR+C DCH   KL+SKI  R+ +VRD TRFH FK G CSC+DYW
Sbjct: 778 TPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGKCSCQDYW 829



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 171/329 (51%), Gaps = 13/329 (3%)

Query: 6   IKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWL 65
           ++ T   + ++ +   + L+  V EA+  F  M   G++     M+ +L  C  P  +  
Sbjct: 206 MERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQD 265

Query: 66  GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE--KGLITWNAMISGY 123
           G   H      G + +  V N +MTMY +CG+V+  RK+FD + E  + +++WN M+S Y
Sbjct: 266 GRLIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAY 325

Query: 124 AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP 183
             N      ++LY+ M+   +  D VT+V +LS+C+      +G  + +QI  +    N 
Sbjct: 326 VHNDRGKDAIQLYQRMQ---LRADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNV 382

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML-- 241
            + NAL++MYA+CG+  +ARA+FD M +++++SWT II  Y        A  LF +ML  
Sbjct: 383 IVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLEL 442

Query: 242 -KSG----IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
            K+G    ++PD  AFV++L+AC+     ++G +         GL       T +V+L G
Sbjct: 443 EKNGSSQRVKPDALAFVTILNACADVSALEQG-KMVSEQAASCGLSSDKAVGTAVVNLYG 501

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLG 325
           + G++ E   + + +   PD  +W A++ 
Sbjct: 502 KCGEIEEGRRIFDGVCSRPDVQLWNAMIA 530



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 133/251 (52%), Gaps = 6/251 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +  L++ + ++    E +    +MR+ GV  ++VT +  L  C DP  L  G+  H + V
Sbjct: 113 WTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPESLRDGIRIHQMVV 172

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE-KGLITWNAMISGYAQNGLATHVL 133
              L++D  V N L+ MY KCGS+ + +++F ++   + +I+W+ M   +A +G     L
Sbjct: 173 DSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGNVWEAL 232

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
             +R M  LG+       V +LS+C+       G  +   I  +GF S   + NA++ MY
Sbjct: 233 RHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSGFESELLVANAVMTMY 292

Query: 194 ARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
            RCG +++AR +FD M    + VVSW  ++  Y  +  G+ A+QL+  M    +R D   
Sbjct: 293 GRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRM---QLRADKVT 349

Query: 252 FVSVLSACSHA 262
           +VS+LSACS A
Sbjct: 350 YVSLLSACSSA 360



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 159/333 (47%), Gaps = 5/333 (1%)

Query: 29  SEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGL-DLDFSVGNC 87
           S+  S    + +Q V   + T   LL  C     L  G   H + VK  L   +  +GN 
Sbjct: 25  SDIASAVLDLEKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNH 84

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           +++MY  C S    +  FD + ++ L +W  +++ +A +G +   L     M+  GV PD
Sbjct: 85  IVSMYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPD 144

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
           AVTF+  L SC    +   G+ + Q +  +    +P ++NAL+NMY +CG+L  A+ +F 
Sbjct: 145 AVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFA 204

Query: 208 GMPR-KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD 266
            M R + V+SW+ + G + +HG+   A++ F  ML  GI+   +A V++LSACS   L  
Sbjct: 205 KMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQ 264

Query: 267 KGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM-LVEPDGAVWGALLG 325
            G    +      G +        ++ + GR G + EA ++ ++M     D   W  +L 
Sbjct: 265 DG-RLIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLS 323

Query: 326 ACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           A  +H +     +   + ++L      Y  LLS
Sbjct: 324 A-YVHNDRGKDAIQLYQRMQLRADKVTYVSLLS 355


>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 572

 Score =  370 bits (950), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 196/507 (38%), Positives = 303/507 (59%), Gaps = 5/507 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           YN +I G V +  + EA+ L+  M E+GVE +  T   +L  C   G +  G+  H    
Sbjct: 66  YNTMIRGNVNDMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVF 125

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K GL+ D  V N L+ MY KCG +     +F+ + EK + +W+A+I  +A   +    L 
Sbjct: 126 KMGLEGDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLM 185

Query: 135 LYREMKSLGVCP-DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
           L  +M S G C  +  T V VLS+C HLG+  +G  +   +  N    N  +  +LI+MY
Sbjct: 186 LLGKMSSEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKTSLIDMY 245

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
            + G L+K   +F  M  K   S+T +I G  IHG G+ A+++F EM++ G+ PD   +V
Sbjct: 246 VKSGCLEKGLRVFKNMSEKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPDDVVYV 305

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
            V SACSHAGL ++GL+ F  M+ ++ ++P  +HY CMVDLLGR G L EA ELI+SM +
Sbjct: 306 GVFSACSHAGLVEEGLQCFKSMQFEHKIEPTVQHYGCMVDLLGRFGMLKEAYELIKSMSI 365

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
           +P+  +W +LL ACK+H N+E+ ++A   +  L   N+G Y++L+N+Y++A+  D + ++
Sbjct: 366 KPNDVIWRSLLSACKVHHNLEIGKIAAENLFMLNQNNSGDYLVLANMYAKAQKWDDVAKI 425

Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS 433
           R  + ER L + PG+S +E K +V+ F+  D++  Q   IY M+ ++E  ++       +
Sbjct: 426 RTKLAERNLVQTPGFSLIEAKRKVYKFVSQDKSIPQWNIIYEMIHQMEWQLKFEGYIPDT 485

Query: 434 DQ----KNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKI 489
            Q     + EE     + HS+KLAIAFG+I+TS G+ + + +NLR+C DCH + K +S I
Sbjct: 486 SQVLLDVDDEEKKERLKFHSQKLAIAFGLIHTSEGSPLRITRNLRMCSDCHTYTKYISMI 545

Query: 490 VDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +R+  VRD  RFHHFK+G CSCKDYW
Sbjct: 546 YEREITVRDRLRFHHFKNGSCSCKDYW 572


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  370 bits (950), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 190/507 (37%), Positives = 304/507 (59%), Gaps = 5/507 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NALI G+  ++    ++    +M+  G+  +S T+  LL  C     L LG   H   +
Sbjct: 464 WNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFII 523

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           +  L+ D  V   ++++Y+ CG +   + LFD + +K L++WN +I+GY QNG     L 
Sbjct: 524 RNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALG 583

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           ++R+M   G+    ++ + V  +C+ L +  +G E       +    + F+  +LI+MYA
Sbjct: 584 VFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYA 643

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           + G++ ++  +F+G+  K+  SW A+I GYGIHG  + A++LF+EM ++G  PD   F+ 
Sbjct: 644 KNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLG 703

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI-ESMLV 313
           VL+AC+H+GL  +GL Y   MK+ +GL+P  +HY C++D+LGRAGQL++AL ++ E M  
Sbjct: 704 VLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSE 763

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
           E D  +W +LL +C+IH+N+E+ E    K+ +LEP     YVLLSN+Y+     + + +V
Sbjct: 764 EADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKV 823

Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDR---NHHQTVEIYRMLD-KLENLVQEHDG 429
           R  M E  L+KD G S++EL  +V  F+VG+R      +   ++ +L+ K+  +    D 
Sbjct: 824 RQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDT 883

Query: 430 TKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKI 489
                  + EE +     HSEKLA+ +G+I TS GT I V KNLRIC DCH   KL+SK+
Sbjct: 884 MSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKV 943

Query: 490 VDRQFIVRDATRFHHFKSGFCSCKDYW 516
           ++R+ +VRD  RFHHFK+G CSC DYW
Sbjct: 944 MEREIVVRDNKRFHHFKNGVCSCGDYW 970



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 160/322 (49%), Gaps = 8/322 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQG--VEINSVTMLCLLPICVDPGYLWLGMCCH 70
           V +N ++ G+           +  +M   G  V+ + VT+L  +P+C    +L      H
Sbjct: 359 VSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELH 418

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
           C  +K     +  V N  +  Y KCGS+ Y +++F  +  K + +WNA+I G+AQ+    
Sbjct: 419 CYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPR 478

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             L+ + +MK  G+ PD+ T   +LS+C+ L +  +G EV   I  N    + F+  +++
Sbjct: 479 LSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVL 538

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           ++Y  CG L   +A+FD M  K++VSW  +I GY  +G  + A+ +F +M+  GI+  G 
Sbjct: 539 SLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGI 598

Query: 251 AFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTC-MVDLLGRAGQLNEALELI 308
           + + V  ACS       G E + Y +K+   L        C ++D+  + G + ++ ++ 
Sbjct: 599 SMMPVFGACSLLPSLRLGREAHAYALKH---LLEDDAFIACSLIDMYAKNGSITQSSKVF 655

Query: 309 ESMLVEPDGAVWGALLGACKIH 330
              L E   A W A++    IH
Sbjct: 656 NG-LKEKSTASWNAMIMGYGIH 676



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 124/254 (48%), Gaps = 6/254 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVE----INSVTMLCLLPICVDPGYLWLGMC 68
           V +N++I  +  N    E+  L G+M E+  +     +  T++ +LP+C     + LG  
Sbjct: 254 VSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKG 313

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            H   VK  LD +  + N LM MY KCG +   + +F     K +++WN M+ G++  G 
Sbjct: 314 VHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGD 373

Query: 129 ATHVLELYREMKSLG--VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
                ++ R+M + G  V  D VT +  +  C H        E+        F  N  + 
Sbjct: 374 THGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVA 433

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           NA +  YA+CG+L  A+ +F G+  KTV SW A+IGG+       +++    +M  SG+ 
Sbjct: 434 NAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLL 493

Query: 247 PDGTAFVSVLSACS 260
           PD     S+LSACS
Sbjct: 494 PDSFTVCSLLSACS 507



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 134/287 (46%), Gaps = 10/287 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVD 59
           VFD +++S +L   +NA+IS Y  N L  E +  F +M     +  +  T  C++  C  
Sbjct: 142 VFD-ALRSKNL-FQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAG 199

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              + +G+  H + VK GL  D  VGN L++ Y   G V    +LFD +PE+ L++WN+M
Sbjct: 200 MSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSM 259

Query: 120 ISGYAQNGLATHVLELYREMKSL----GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175
           I  ++ NG +     L  EM          PD  T V VL  CA      +G  V     
Sbjct: 260 IRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAV 319

Query: 176 ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQ 235
                    LNNAL++MY++CG +  A+ IF     K VVSW  ++GG+   G       
Sbjct: 320 KLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFD 379

Query: 236 LFDEMLKSG--IRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKY 279
           +  +ML  G  ++ D    ++ +  C H        E + Y +K ++
Sbjct: 380 VLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEF 426



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 126/234 (53%), Gaps = 9/234 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +I+GY+ N     A+ +F +M   G+++  ++M+ +   C     L LG   H  
Sbjct: 563 VSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAY 622

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K  L+ D  +   L+ MY K GS+    K+F+ + EK   +WNAMI GY  +GLA   
Sbjct: 623 ALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEA 682

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           ++L+ EM+  G  PD +TF+GVL++C H G    GL    Q++++ FG  P L +   +I
Sbjct: 683 IKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSS-FGLKPNLKHYACVI 741

Query: 191 NMYARCGNLKKA-RAIFDGMPRKTVVS-WTAIIGGYGIHGHGE----VAVQLFD 238
           +M  R G L KA R + + M  +  V  W +++    IH + E    VA +LF+
Sbjct: 742 DMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFE 795



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 94/179 (52%), Gaps = 5/179 (2%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM-KSLGVCP 146
           ++TMY  CGS D  R +FD +  K L  WNA+IS Y++N L   VLE + EM  +  + P
Sbjct: 126 IITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLP 185

Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF 206
           D  T+  V+ +CA +    +GL V   +   G   + F+ NAL++ Y   G +  A  +F
Sbjct: 186 DHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLF 245

Query: 207 DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS----GIRPDGTAFVSVLSACSH 261
           D MP + +VSW ++I  +  +G  E +  L  EM++        PD    V+VL  C+ 
Sbjct: 246 DIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAR 304



 Score = 43.1 bits (100), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 3/113 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM-CCH 70
           T  +NA+I GY ++ L  EA+ LF +M+  G   + +T L +L  C   G +  G+    
Sbjct: 663 TASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLD 722

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYG-RKLFDQVPEKGLI-TWNAMIS 121
            +   FGL  +     C++ M  + G +D   R + +++ E+  +  W +++S
Sbjct: 723 QMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLS 775


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 184/437 (42%), Positives = 270/437 (61%), Gaps = 6/437 (1%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N ++  Y K G +   R++F ++P +  ++W+ MI G+A NG        +RE+    + 
Sbjct: 204 NGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLREEIR 263

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
            + V+  GVLS+CA  GA   G  +   ++  GF     +NNALI+ Y++CGN+  AR +
Sbjct: 264 TNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLV 323

Query: 206 FDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL 264
           F  MP  +++VSWT+II G  +HG GE A+QLF EM +SG+RPDG  F+S+L ACSH+GL
Sbjct: 324 FQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGL 383

Query: 265 TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
            ++G   F  MKN YG++P  EHY CMVDL GRA +L +A E I  M V P+  +W  LL
Sbjct: 384 VEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNAIIWRTLL 443

Query: 325 GACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKK 384
           GAC IH N+E+AEL   ++ +++P N+G +VLLSN+Y+ A     +  +R  M E  +KK
Sbjct: 444 GACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYAVAGKWKDVSSIRRTMTEHSMKK 503

Query: 385 DPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK---RSDQKNSEEH 441
            PG+S +E+   ++ F+ G++ +  T E +  L ++   ++   G     RS   + EE 
Sbjct: 504 TPGWSMIEIDKVIYGFVAGEKPNEVTEEAHEKLREIMLRLRTEAGYAPQLRSVLHDIEEE 563

Query: 442 LNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDA 499
             +  V  HSEKLA AFGI     G  + ++KNLR+CGDCH  +KL+SK+   + IVRD 
Sbjct: 564 EKEDSVSKHSEKLAAAFGIAKLPKGRILRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDR 623

Query: 500 TRFHHFKSGFCSCKDYW 516
           +RFH FK GFCSC+DYW
Sbjct: 624 SRFHSFKDGFCSCRDYW 640



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 113/225 (50%), Gaps = 5/225 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++ +I G+  N    EA   F ++  + +  N V++  +L  C   G    G   H  
Sbjct: 232 VSWSTMIVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGF 291

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP-EKGLITWNAMISGYAQNGLATH 131
             K G     SV N L+  Y KCG+V   R +F  +P  + +++W ++I+G A +G    
Sbjct: 292 VEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEE 351

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--AL 189
            ++L+ EM+  GV PD +TF+ +L +C+H G    G  +  +++ N +G  P + +   +
Sbjct: 352 AIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEGCGLFSKMK-NLYGIEPAIEHYGCM 410

Query: 190 INMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVA 233
           +++Y R   L+KA      MP     + W  ++G   IHG+ E+A
Sbjct: 411 VDLYGRAARLQKAYEFICEMPVSPNAIIWRTLLGACSIHGNIEMA 455



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/297 (20%), Positives = 110/297 (37%), Gaps = 64/297 (21%)

Query: 97  SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK-SLGVCPDAVTFVGVL 155
           ++ Y  +LF   P       N +I   + +      L  + +++    + PD+ TF   L
Sbjct: 51  ALHYALRLFHHFPNPDTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFAL 110

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
            + A+      G+++  Q   +GF ++ F+   LI+MYA CG+   AR +FD M    VV
Sbjct: 111 KAVANSRHLRPGIQLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVV 170

Query: 216 SWTAI-------------------------------IGGYGIHGHGEVAVQLFDEM---- 240
           +W A+                               + GY   G   +A ++F EM    
Sbjct: 171 TWNAVLTAAFRCGDVEGAQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRD 230

Query: 241 ---------------------------LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
                                      L+  IR +  +   VLSAC+ AG  + G +  +
Sbjct: 231 EVSWSTMIVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFG-KILH 289

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           G   K G          ++D   + G +  A  + ++M V      W +++    +H
Sbjct: 290 GFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMH 346


>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 182/428 (42%), Positives = 268/428 (62%), Gaps = 9/428 (2%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
           G  D    LF ++P + +++WN+M++ YAQ G     L L+ +M+++GV P   T V +L
Sbjct: 162 GKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 221

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
           S+CAHLGA   GL +   I  N    N  +  AL++MYA+CG +  A  +F+ M  K V+
Sbjct: 222 SACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVL 281

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           +W  II G  IHGH + A +LF EM ++G+ P+   FV++LSACSHAG+ D+G +    M
Sbjct: 282 AWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCM 341

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVEL 335
            + YG++P  EHY C++DLL RAG L EA+ELI +M +EP+    GALLG C+IH N EL
Sbjct: 342 SSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFEL 401

Query: 336 AELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKG 395
            E+   ++I L+P ++G Y+LLSNIY+ A+  D   +VR +M+   + K PG S +ELKG
Sbjct: 402 GEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKG 461

Query: 396 RVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD-------QKNSEEHLNDTEVH 448
            VH F+ GD +H ++ +IY  L+++   ++   G            ++  +EH     VH
Sbjct: 462 MVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGHSADTGDVLLDMEEEDKEHA--LPVH 519

Query: 449 SEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSG 508
           SEKLAIA+G+++      I ++KNLR+C DCH   KL+SK+  R+ IVRD  RFHHF+ G
Sbjct: 520 SEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDG 579

Query: 509 FCSCKDYW 516
            CSC D+W
Sbjct: 580 ECSCLDFW 587



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +N++++ Y      +EA++LF +MR  GV+    T++ LL  C   G L  G+  H 
Sbjct: 179 VVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHT 238

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                 ++++  VG  L+ MY KCG +    ++F+ +  K ++ WN +I+G A +G    
Sbjct: 239 YINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKE 298

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--AL 189
              L++EMK  GV P+ +TFV +LS+C+H G    G ++     ++ +G  P + +   +
Sbjct: 299 AQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKL-LDCMSSSYGIEPKVEHYGCV 357

Query: 190 INMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEV 232
           I++ AR G L++A  +   MP      +  A++GG  IHG+ E+
Sbjct: 358 IDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFEL 401


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 190/507 (37%), Positives = 304/507 (59%), Gaps = 5/507 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NALI G+  ++    ++    +M+  G+  +S T+  LL  C     L LG   H   +
Sbjct: 214 WNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFII 273

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           +  L+ D  V   ++++Y+ CG +   + LFD + +K L++WN +I+GY QNG     L 
Sbjct: 274 RNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALG 333

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           ++R+M   G+    ++ + V  +C+ L +  +G E       +    + F+  +LI+MYA
Sbjct: 334 VFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYA 393

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           + G++ ++  +F+G+  K+  SW A+I GYGIHG  + A++LF+EM ++G  PD   F+ 
Sbjct: 394 KNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLG 453

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI-ESMLV 313
           VL+AC+H+GL  +GL Y   MK+ +GL+P  +HY C++D+LGRAGQL++AL ++ E M  
Sbjct: 454 VLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSE 513

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
           E D  +W +LL +C+IH+N+E+ E    K+ +LEP     YVLLSN+Y+     + + +V
Sbjct: 514 EADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKV 573

Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDR---NHHQTVEIYRMLD-KLENLVQEHDG 429
           R  M E  L+KD G S++EL  +V  F+VG+R      +   ++ +L+ K+  +    D 
Sbjct: 574 RQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDT 633

Query: 430 TKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKI 489
                  + EE +     HSEKLA+ +G+I TS GT I V KNLRIC DCH   KL+SK+
Sbjct: 634 MSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKV 693

Query: 490 VDRQFIVRDATRFHHFKSGFCSCKDYW 516
           ++R+ +VRD  RFHHFK+G CSC DYW
Sbjct: 694 MEREIVVRDNKRFHHFKNGVCSCGDYW 720



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 160/323 (49%), Gaps = 8/323 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQG--VEINSVTMLCLLPICVDPGYLWLGMCC 69
            V +N ++ G+           +  +M   G  V+ + VT+L  +P+C    +L      
Sbjct: 108 VVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKEL 167

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           HC  +K     +  V N  +  Y KCGS+ Y +++F  +  K + +WNA+I G+AQ+   
Sbjct: 168 HCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDP 227

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              L+ + +MK  G+ PD+ T   +LS+C+ L +  +G EV   I  N    + F+  ++
Sbjct: 228 RLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSV 287

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           +++Y  CG L   +A+FD M  K++VSW  +I GY  +G  + A+ +F +M+  GI+  G
Sbjct: 288 LSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCG 347

Query: 250 TAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTC-MVDLLGRAGQLNEALEL 307
            + + V  ACS       G E + Y +K+   L        C ++D+  + G + ++ ++
Sbjct: 348 ISMMPVFGACSLLPSLRLGREAHAYALKH---LLEDDAFIACSLIDMYAKNGSITQSSKV 404

Query: 308 IESMLVEPDGAVWGALLGACKIH 330
               L E   A W A++    IH
Sbjct: 405 FNG-LKEKSTASWNAMIMGYGIH 426



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 124/254 (48%), Gaps = 6/254 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVE----INSVTMLCLLPICVDPGYLWLGMC 68
           V +N++I  +  N    E+  L G+M E+  +     +  T++ +LP+C     + LG  
Sbjct: 4   VSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKG 63

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            H   VK  LD +  + N LM MY KCG +   + +F     K +++WN M+ G++  G 
Sbjct: 64  VHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGD 123

Query: 129 ATHVLELYREMKSLG--VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
                ++ R+M + G  V  D VT +  +  C H        E+        F  N  + 
Sbjct: 124 THGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVA 183

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           NA +  YA+CG+L  A+ +F G+  KTV SW A+IGG+       +++    +M  SG+ 
Sbjct: 184 NAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLL 243

Query: 247 PDGTAFVSVLSACS 260
           PD     S+LSACS
Sbjct: 244 PDSFTVCSLLSACS 257



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 126/234 (53%), Gaps = 9/234 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +I+GY+ N     A+ +F +M   G+++  ++M+ +   C     L LG   H  
Sbjct: 313 VSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAY 372

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K  L+ D  +   L+ MY K GS+    K+F+ + EK   +WNAMI GY  +GLA   
Sbjct: 373 ALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEA 432

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           ++L+ EM+  G  PD +TF+GVL++C H G    GL    Q++++ FG  P L +   +I
Sbjct: 433 IKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSS-FGLKPNLKHYACVI 491

Query: 191 NMYARCGNLKKA-RAIFDGMPRKTVVS-WTAIIGGYGIHGHGE----VAVQLFD 238
           +M  R G L KA R + + M  +  V  W +++    IH + E    VA +LF+
Sbjct: 492 DMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFE 545



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 7/176 (3%)

Query: 111 KGLITWNAMISGYAQNGLATHVLELYREMKSL----GVCPDAVTFVGVLSSCAHLGAHSV 166
           +  ++WN+MI  ++ NG +     L  EM          PD  T V VL  CA      +
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 167 GLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGI 226
           G  V              LNNAL++MY++CG +  A+ IF     K VVSW  ++GG+  
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 227 HGHGEVAVQLFDEMLKSG--IRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKY 279
            G       +  +ML  G  ++ D    ++ +  C H        E + Y +K ++
Sbjct: 121 EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEF 176



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 3/113 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM-CCH 70
           T  +NA+I GY ++ L  EA+ LF +M+  G   + +T L +L  C   G +  G+    
Sbjct: 413 TASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLD 472

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYG-RKLFDQVPEKGLI-TWNAMIS 121
            +   FGL  +     C++ M  + G +D   R + +++ E+  +  W +++S
Sbjct: 473 QMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLS 525


>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 192/524 (36%), Positives = 307/524 (58%), Gaps = 15/524 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
            F++S + +  T  ++++IS +  N L   ++    KM    +  +   +      C   
Sbjct: 72  AFEDSPQKSATT--WSSIISCFAQNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGIL 129

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
               +G   HC+ +K G D D  VG+ L+ MY KCG + Y RK+FD++P + ++TW+ M+
Sbjct: 130 SRCDIGKSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMM 189

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA---- 176
            GYAQ G     L L++E     +  +  +F  V+S CA+    S  LE+ +QIQ     
Sbjct: 190 YGYAQMGENEEALWLFKEALFENLAVNDYSFSTVISVCAN----STLLELGRQIQGLCIK 245

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
           + F S+ F+ ++L+++Y++CG+L+ A  +FD +P + +  W A++     H H +  ++L
Sbjct: 246 SSFDSSSFVGSSLVSLYSKCGDLEGAYQVFDEVPMRNLGIWNAMLKACAQHSHTQKVIEL 305

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           F  M  SG++P+   F++VL+ACSHAGL D+G +Y++ +  +  ++P  +HY  +VD+LG
Sbjct: 306 FKRMKLSGMKPNFITFLNVLNACSHAGLVDEG-KYYFDLMKESRIEPTDKHYASLVDMLG 364

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356
           RAG+L EALE++ +M ++P  +VWGALL +C IHKN ELA  A  KV +L P+++G ++ 
Sbjct: 365 RAGKLEEALEIVTNMPIDPTESVWGALLTSCTIHKNTELAAFAADKVFELGPVSSGMHIS 424

Query: 357 LSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRM 416
           LSN Y+     +   + R ++R+R  KK+ G S+VE + +VH F  G+R H ++ EIY  
Sbjct: 425 LSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHERSKEIYEK 484

Query: 417 LDKLENLVQE----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKN 472
           L +L   +++     D +    + + +E       HSE+LAIAFG+I       I VMKN
Sbjct: 485 LAELGEEMEKAGYVADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKN 544

Query: 473 LRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           LR+CGDCH  IK +S    R  IVRD  RFH F+ G CSC DYW
Sbjct: 545 LRVCGDCHNAIKFMSICTRRVIIVRDNNRFHRFEDGKCSCNDYW 588



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 100/336 (29%), Positives = 163/336 (48%), Gaps = 7/336 (2%)

Query: 66  GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
           G+  H   VK GL L   V N L+  Y K       R+ F+  P+K   TW+++IS +AQ
Sbjct: 34  GLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSATTWSSIISCFAQ 93

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
           N L    LE  R+M +  + PD         SC  L    +G  V       G+ ++ F+
Sbjct: 94  NELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGILSRCDIGKSVHCLSMKTGYDADVFV 153

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
            ++L++MYA+CG +  AR +FD MP + VV+W+ ++ GY   G  E A+ LF E L   +
Sbjct: 154 GSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMMYGYAQMGENEEALWLFKEALFENL 213

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
             +  +F +V+S C+++ L + G +   G+  K          + +V L  + G L  A 
Sbjct: 214 AVNDYSFSTVISVCANSTLLELGRQ-IQGLCIKSSFDSSSFVGSSLVSLYSKCGDLEGAY 272

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS--NIYSE 363
           ++ + + +   G +W A+L AC  H + +     F K +KL  M   +   L+  N  S 
Sbjct: 273 QVFDEVPMRNLG-IWNAMLKACAQHSHTQKVIELF-KRMKLSGMKPNFITFLNVLNACSH 330

Query: 364 ARNLDGIMRVRMMMRERRLK-KDPGY-SYVELKGRV 397
           A  +D       +M+E R++  D  Y S V++ GR 
Sbjct: 331 AGLVDEGKYYFDLMKESRIEPTDKHYASLVDMLGRA 366


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 191/510 (37%), Positives = 294/510 (57%), Gaps = 7/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++  GY   +   E  SLF ++ E G+  ++ T   LL  C     L  G   HC+
Sbjct: 95  VIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCL 154

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K GLD +  V   L+ MY +C  VD  R +FD++ E  ++ +NAMI+GYA+       
Sbjct: 155 SMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMITGYARRNRPNEA 214

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+REM+   + P+ +T + VLSSCA LG+  +G  + +  + + F     +N ALI+M
Sbjct: 215 LSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDM 274

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           +A+CG+L  A +IF+ M  K   +W+A+I  Y  HG  E ++ +F+ M    ++PD   F
Sbjct: 275 FAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITF 334

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + +L+ACSH G  ++G +YF  M +K+G+ P  +HY  MVDLL  AG L +A E I+ + 
Sbjct: 335 LGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSXAGNLEDAYEFIDKLP 394

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           + P   +W  LL AC  H N++LAE    ++ +L+  + G YV+LSN+Y+  +  + +  
Sbjct: 395 ISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDS 454

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD------KLENLVQE 426
           +R +M++R+  K PG S +E+   VH F  GD     T +++R LD      KL   V +
Sbjct: 455 LRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPD 514

Query: 427 HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
                 ++  + E+ +     HSEKLAI FG++NT PGT I V+KNLR+C DCH   KL+
Sbjct: 515 TSMVVHANMNDQEKEIT-LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLI 573

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           S I  R+ + RD  RFHHF+ G CSC D+W
Sbjct: 574 SLIFGRKVVXRDVQRFHHFEDGKCSCGDFW 603



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 121/248 (48%), Gaps = 2/248 (0%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
            S+ Y R LF+ + E  ++ +N+M  GY++      V  L+ E+   G+ PD  TF  +L
Sbjct: 77  SSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLL 136

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
            +CA   A   G ++       G   N ++   LINMY  C ++  AR +FD +    VV
Sbjct: 137 KACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVV 196

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
            + A+I GY        A+ LF EM    ++P+    +SVLS+C+  G  D G ++ +  
Sbjct: 197 CYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLG-KWIHKY 255

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVEL 335
             K+      +  T ++D+  + G L++A+ + E M  + D   W A++ A   H   E 
Sbjct: 256 AKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYK-DTQAWSAMIVAYANHGKAEK 314

Query: 336 AELAFGKV 343
           + L F ++
Sbjct: 315 SMLMFERM 322


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 192/434 (44%), Positives = 272/434 (62%), Gaps = 3/434 (0%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD S +     V +  +I GYV      E V LF +M  + ++ + +T++ +L  C   
Sbjct: 182 VFDTSPQRD--LVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARL 239

Query: 61  GYLWLGMCCHCICVK-FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
           G L LG   H   ++   ++LD  VGN L+ MY+KCG  ++ RK+F ++P K +++WN+M
Sbjct: 240 GDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSM 299

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           ISG AQ G     L ++R+M+ LGV PD VT V VL+SCA+LG   +G  V   +  N  
Sbjct: 300 ISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQI 359

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            ++ F+ NAL++MYA+CG++ +A  +F  M RK V S+TA+I G  +HG G  A+ LF E
Sbjct: 360 RADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSE 419

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M K GI PD   FV VL+ACSH GL ++G +YF  M   Y L+P  EHY CMVDLLGRAG
Sbjct: 420 MPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAG 479

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
            +NEA E I +M +EPD  V GALLGACKIH  VEL E    K+ K+EP   G YVL+SN
Sbjct: 480 LINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSN 539

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
           IYS A      +++R  M+ER L+K PG S +EL G +H F  GD++H +  EIY++LD+
Sbjct: 540 IYSSANRWRDALKLRKTMKERNLEKTPGCSSIELDGVIHEFQKGDKSHPKIKEIYKLLDE 599

Query: 420 LENLVQEHDGTKRS 433
           + + ++ ++   R+
Sbjct: 600 IMSHLKNNECLTRT 613



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 162/299 (54%), Gaps = 3/299 (1%)

Query: 15  YNALISGYVL-NSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           YNA+I G    N+   E + ++ +M  +G+  ++ T+  +L  C +   +  G   H   
Sbjct: 92  YNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQA 151

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           +K GL  D  V N LM MY  C  +   RK+FD  P++ L++W  MI GY + G A   +
Sbjct: 152 IKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGV 211

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG-FGSNPFLNNALINM 192
            L+ EM    +  D +T V VLSSCA LG   +G ++ + I  N     + F+ NAL++M
Sbjct: 212 GLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDM 271

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CG+   AR +F  MP K VVSW ++I G    G  + ++ +F +M + G++PD    
Sbjct: 272 YLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTL 331

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           V+VL++C++ G+ + G ++ +   ++  ++        +VD+  + G +++A  + ++M
Sbjct: 332 VAVLNSCANLGVLELG-KWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAM 389



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 125/286 (43%), Gaps = 37/286 (12%)

Query: 79  DLDFSVGNCLMTMYVKCGSVD--YGRKLFDQVPEKGLITWNAMISGYA-QNGLATHVLEL 135
           D   ++   L  +  +   +D  Y   L  Q+    L  +NA+I G A  N  +   L +
Sbjct: 53  DAQLTISTRLSALCAQSLPIDPRYALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVV 112

Query: 136 YREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR 195
           Y++M S G+ PD  T   VL +CA   A   G EV  Q    G  S+ +++N L+ MYA 
Sbjct: 113 YKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAV 172

Query: 196 CGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSV 255
           C  ++ AR +FD  P++ +VSWT +I GY   G     V LF EM    ++ DG   V V
Sbjct: 173 CDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIV 232

Query: 256 LSACSHAGLTDKG--------------LEYFYG-----MKNKYG--------LQPGPEH- 287
           LS+C+  G    G              L+ F G     M  K G         Q  P   
Sbjct: 233 LSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKN 292

Query: 288 ---YTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGAC 327
              +  M+  L + GQ  E+L +   M    V+PD     A+L +C
Sbjct: 293 VVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSC 338


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 204/547 (37%), Positives = 308/547 (56%), Gaps = 45/547 (8%)

Query: 15  YNALISGYVLNSLVSE---AVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +N +I   V N    +    +S++ +MR   V  +  T   LLP   +P +L LG   H 
Sbjct: 26  WNIIIRAIVHNVSPPQRHSPISVYFRMRHHCVSPDFHTFPFLLPSFHNPIHLPLGQRTHA 85

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGS-------------------------------VDY 100
             + FGLD D  V   L+ MY  CG                                +++
Sbjct: 86  QILLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFDESVSKDLPAWNSVVNAYAKAGLINH 145

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK-----SLGVCPDAVTFVGVL 155
            RKLFD++PE+ +I+W+ +I+GY   G     L+L+REM+      + V P+  T   VL
Sbjct: 146 ARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMSTVL 205

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM-PRKTV 214
           S+C  LGA   G  V   I   G   +  L  ALI+MYA+CG+L++A+ +FD +  +K V
Sbjct: 206 SACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSKKDV 265

Query: 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSG-IRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
            +++A+I    ++G  +   Q+F EM  S  I P+   FV +L AC H GL +KG  YF 
Sbjct: 266 KAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKSYFK 325

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNV 333
            M  ++G+ P  +HY CMVDL GR+G + EA   I SM +EPD  +WG+LL   ++  ++
Sbjct: 326 MMTEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDI 385

Query: 334 ELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVEL 393
           +  E A  ++I+L+PMN+G YVLLSN+Y++      + R+R  M  + +KK PG SYVE+
Sbjct: 386 KTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWIEVKRIRHEMEVKGIKKVPGCSYVEV 445

Query: 394 KGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEV----HS 449
           +G VH F+VGD +  ++  IY ML+++   ++E      + +   +    D E+    HS
Sbjct: 446 EGVVHEFVVGDESQQESERIYAMLEEIMQRLREAGYVSDTKEVLLDLEEKDKEMALSYHS 505

Query: 450 EKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGF 509
           EKLAIAF ++ T PGT + ++KNLRICGDCHL +K++SK+  R+ +VRD  RFHHF  G 
Sbjct: 506 EKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFSDGS 565

Query: 510 CSCKDYW 516
           CSC+D+W
Sbjct: 566 CSCRDFW 572



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 126/238 (52%), Gaps = 13/238 (5%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMR-----EQGVEINSVTMLCLLP 55
           +FDE  +     + ++ LI+GYV+     EA+ LF +M+     E  V  N  TM  +L 
Sbjct: 149 LFDEMPERN--VISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMSTVLS 206

Query: 56  ICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV-PEKGLI 114
            C   G L  G   H    K+G+++D  +G  L+ MY KCGS++  +++FD +  +K + 
Sbjct: 207 ACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSKKDVK 266

Query: 115 TWNAMISGYAQNGLATHVLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQ 173
            ++AMI   A  GL     +++ EM  S  + P++VTFVG+L +C H G  + G +   +
Sbjct: 267 AYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKG-KSYFK 325

Query: 174 IQANGFGSNPFLNN--ALINMYARCGNLKKARAIFDGMPRKT-VVSWTAIIGGYGIHG 228
           +    FG  P + +   ++++Y R G +K+A +    MP +  V+ W +++ G  + G
Sbjct: 326 MMTEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLG 383


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 197/541 (36%), Positives = 287/541 (53%), Gaps = 36/541 (6%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T  +N +I G+  +     ++ L+ +M       N+ T   LL  C +          H 
Sbjct: 80  TFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHA 139

Query: 72  ICVKFGLDLDFSVGNCLMTMY-------------------------------VKCGSVDY 100
              K G + D    N L+  Y                               VK G +D 
Sbjct: 140 QITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDI 199

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160
              LF ++ EK  I+W  MISGY Q  +    L+L+ EM++  V PD V+    LS+CA 
Sbjct: 200 ALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQ 259

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           LGA   G  +   +       +  L   LI+MYA+CG +++A  +F  + +K+V +WTA+
Sbjct: 260 LGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTAL 319

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           I GY  HGHG  A+  F EM K GI+P+   F +VL+ACS+ GL ++G   FY M+  Y 
Sbjct: 320 ISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYN 379

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           L+P  EHY C+VDLLGRAG L+EA   I+ M ++P+  +WGALL AC+IHKN+EL E   
Sbjct: 380 LKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIG 439

Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400
             +I ++P + G YV  +NI++  +  D     R +M+E+ + K PG S + L+G  H F
Sbjct: 440 EILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEF 499

Query: 401 MVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQK-----NSEEHLNDTEVHSEKLAIA 455
           + GDR+H +  +I      +   ++E+      ++      + +E       HSEKLAI 
Sbjct: 500 LAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAIT 559

Query: 456 FGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDY 515
           +G+I T PGT I +MKNLR+C DCH   KL+SKI  R  ++RD TRFHHF+ G CSC DY
Sbjct: 560 YGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDY 619

Query: 516 W 516
           W
Sbjct: 620 W 620



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 129/295 (43%), Gaps = 36/295 (12%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVD---YGRKLFDQVPEKGLITWNAMISGYAQN 126
           H   +K GL  D       ++  +   S D   Y + +FD         WN MI G++ +
Sbjct: 34  HARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCS 93

Query: 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
                 L LY+ M       +A TF  +L +C++L A     ++  QI   G+ ++ +  
Sbjct: 94  DEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAV 153

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV-------------- 232
           N+LIN YA  GN K A  +FD +P    VSW ++I GY   G  ++              
Sbjct: 154 NSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAI 213

Query: 233 -----------------AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
                            A+QLF EM  S + PD  +  + LSAC+  G  ++G ++ +  
Sbjct: 214 SWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQG-KWIHSY 272

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
            NK  ++        ++D+  + G++ EALE+ +++  +   A W AL+     H
Sbjct: 273 LNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQA-WTALISGYAYH 326


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 183/433 (42%), Positives = 274/433 (63%), Gaps = 14/433 (3%)

Query: 91  MYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVT 150
           M+  CG +D  + +FD +  + +++W AMI GY +       L L+REM+   V PD  T
Sbjct: 225 MFAACGEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFT 284

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
            V +L +CA LGA  +G  V+  I  N   ++ F+ NAL++MY +CGN++KA+ +F  M 
Sbjct: 285 MVSILIACALLGALELGEWVKTCIDKNSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEMY 344

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270
           +K   +WT +I G  I+GHGE A+ +F  M+++ + PD   ++ VL AC    + DKG  
Sbjct: 345 QKDKFTWTTMIVGLAINGHGEEALAMFSNMIEASVTPDEITYIGVLCAC----MVDKGKS 400

Query: 271 YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           +F  M  ++G++P   HY CMVDLLG  G L EALE+I +M V+P+  VWG+ LGAC++H
Sbjct: 401 FFTNMTMQHGIKPTVTHYGCMVDLLGCVGCLEEALEVIVNMPVKPNSIVWGSPLGACRVH 460

Query: 331 KNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSY 390
           KNV+LA++A  ++++LEP N   YVLL NIY+ ++  + + +VR +M ER +KK PG S 
Sbjct: 461 KNVQLADMAAKQILELEPENGAVYVLLCNIYAASKKWENLCQVRKLMMERGIKKTPGCSL 520

Query: 391 VELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ-------EHDGTKRSDQKNSEEHLN 443
           +EL G V+ F+ GD++H Q+ EIY    KLEN++Q         D ++       E+   
Sbjct: 521 MELNGNVYEFVAGDQSHPQSKEIYA---KLENMMQGLIKAGYSPDTSEVFLDLGEEDKET 577

Query: 444 DTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFH 503
               HSEKLAIA+ +I++ PG  I ++KNLR+C DCH   KLVS+  +R+ IV+D TRFH
Sbjct: 578 ALYRHSEKLAIAYALISSGPGVTIRIVKNLRMCVDCHHMAKLVSQAYNRELIVKDKTRFH 637

Query: 504 HFKSGFCSCKDYW 516
           HF+ G CSC ++W
Sbjct: 638 HFRHGSCSCNNFW 650



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 121/259 (46%), Gaps = 12/259 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD     T   V + A+I GY+  +    A++LF +M+   V+ +  TM+ +L  C   
Sbjct: 238 VFDN--MKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACALL 295

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L LG        K     D  VGN L+ MY KCG+V   +K+F ++ +K   TW  MI
Sbjct: 296 GALELGEWVKTCIDKNSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMI 355

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            G A NG     L ++  M    V PD +T++GVL +C      S    +  Q      G
Sbjct: 356 VGLAINGHGEEALAMFSNMIEASVTPDEITYIGVLCACMVDKGKSFFTNMTMQ-----HG 410

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMPRK-TVVSWTAIIGGYGIHGHGEVAVQLF 237
             P + +   ++++    G L++A  +   MP K   + W + +G   +H + ++A    
Sbjct: 411 IKPTVTHYGCMVDLLGCVGCLEEALEVIVNMPVKPNSIVWGSPLGACRVHKNVQLADMAA 470

Query: 238 DEMLKSGIRPDGTAFVSVL 256
            ++L+  + P+  A   +L
Sbjct: 471 KQILE--LEPENGAVYVLL 487



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 119/284 (41%), Gaps = 24/284 (8%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYV--KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
           H   +K GL  D    N ++      + G+++Y  ++FD +P   +  WN MI GY++  
Sbjct: 27  HSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTIPHPSMFIWNTMIKGYSKIS 86

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
              + + +Y  M +  + PD  TF   L       A   G E+      +GF SN F+  
Sbjct: 87  HPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGKELLNHAVKHGFDSNLFVQK 146

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           A I+M++ CG +  A  +FD      VV+W  ++ GY      +++  L      S ++ 
Sbjct: 147 AFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYNRVKQFKISKMLLVLSACSKLKD 206

Query: 248 -----------DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
                      +G     + +AC   G  D+    F  MK +  +      +T M+D   
Sbjct: 207 LEWGKHIFKYINGGIVEHMFAAC---GEMDEAQGVFDNMKTRDVVS-----WTAMIDGYL 258

Query: 297 RAGQLNEALELIESML---VEPDGAVWGALLGACKIHKNVELAE 337
           R      AL L   M    V+PD     ++L AC +   +EL E
Sbjct: 259 RMNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELGE 302


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 196/513 (38%), Positives = 290/513 (56%), Gaps = 49/513 (9%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V +NA++SG+  +  +S A   F    E+G  +                 LW  M    
Sbjct: 191 SVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAV-----------------LWTAM---- 229

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                            ++ Y+  G+V    + F+ +P + L++WNA+++GY +N  A  
Sbjct: 230 -----------------VSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADD 272

Query: 132 VLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
            L L+R M +   V P+A T   VL  C++L A   G ++ Q         N  +  +L+
Sbjct: 273 ALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLV 332

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MY +CG+L  A  +F  M  + VV+W A+I GY  HG G+ A+ LF+ M   G+ P+  
Sbjct: 333 SMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWI 392

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            FV+VL+AC H GL D G+  F GM+  YG++P  +HY+CMVDLL RAG+L  A++LI S
Sbjct: 393 TFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRS 452

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M  EP  + +G LL AC+++KN+E AELA GK+I+ +P + G YV L+NIY+ A   D +
Sbjct: 453 MPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDV 512

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
            RVR  M++  + K PGYS++E+KG +H F   DR H Q   +Y + +KL  L +     
Sbjct: 513 SRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQ---LYLIHEKLGQLAERMKAM 569

Query: 431 KRSDQKNSEEHLNDTEV-------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFI 483
                 +   H  D  +       HSEKLAI+FG+I+T+PG  + + KNLR+CGDCH   
Sbjct: 570 GYVPDLDFVLHDVDETLKVQMLMRHSEKLAISFGLISTAPGMTLRIFKNLRVCGDCHNAA 629

Query: 484 KLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K++SKI DR+ I+RD TRFHHF+ G CSC DYW
Sbjct: 630 KVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 662



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 115/246 (46%), Gaps = 10/246 (4%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L++ +   G  D  R+LF  +P + +++WN M+SG +++G       ++  M      
Sbjct: 133 NTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMP----V 188

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
            ++V++  ++S  A     S   E  +     G   +  L  A+++ Y   GN+ KA   
Sbjct: 189 RNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKG---DAVLWTAMVSGYMDIGNVVKAIEY 245

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK-SGIRPDGTAFVSVLSACSHAGL 264
           F+ MP + +VSW A++ GY  + H + A++LF  M++ + ++P+ +   SVL  CS+   
Sbjct: 246 FEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSA 305

Query: 265 TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
              G +  +    K  L       T +V +  + G L+ A +L   M    D   W A++
Sbjct: 306 LGFGKQ-IHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR-DVVAWNAMI 363

Query: 325 GACKIH 330
                H
Sbjct: 364 SGYAQH 369



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 115/271 (42%), Gaps = 34/271 (12%)

Query: 83  SVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQN-GLATHVLELYREMKS 141
           S+    +   V+ G +    + F   P K   T+N +++GYA+  G       L+  + +
Sbjct: 67  SLSTVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPT 126

Query: 142 LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN----NALINMYARCG 197
               PDAV++   L SC      + G           F S P  +    N +++  ++ G
Sbjct: 127 ----PDAVSY-NTLLSCHFASGDADGAR-------RLFASMPVRDVVSWNTMVSGLSKSG 174

Query: 198 NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257
            +++A+A+F  MP +  VSW A++ G+        A + F    + G   D   + +++S
Sbjct: 175 AVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKG---DAVLWTAMVS 231

Query: 258 ACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML----V 313
                G   K +EYF  M  +  +      +  +V    +    ++AL L  +M+    V
Sbjct: 232 GYMDIGNVVKAIEYFEAMPVRNLVS-----WNAVVAGYVKNSHADDALRLFRTMVREANV 286

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVI 344
           +P+ +   ++L  C       L+ L FGK I
Sbjct: 287 QPNASTLSSVLLGCS-----NLSALGFGKQI 312



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 54/102 (52%), Gaps = 1/102 (0%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM- 67
           T   V +NA+ISGY  +    EA++LF +M+++GVE N +T + +L  C+  G    G+ 
Sbjct: 353 TRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIR 412

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP 109
           C   +   +G++      +C++ +  + G ++    L   +P
Sbjct: 413 CFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMP 454



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 71/176 (40%), Gaps = 17/176 (9%)

Query: 185 LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYG-IHGHGEVAVQLFDEMLKS 243
           L+   +    R G+L  A   F   PRKT  ++  ++ GY    G    A  LFD +   
Sbjct: 68  LSTVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPT- 126

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
              PD  ++ ++LS    +G  D     F  M  +  +      +  MV  L ++G + E
Sbjct: 127 ---PDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVS-----WNTMVSGLSKSGAVEE 178

Query: 304 ALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF------GKVIKLEPMNTGY 353
           A  +  +M V  +   W A++      +++  AE  F      G  +    M +GY
Sbjct: 179 AKAVFLAMPVR-NSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGY 233


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 196/513 (38%), Positives = 290/513 (56%), Gaps = 49/513 (9%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V +NA++SG+  +  +S A   F    E+G  +                 LW  M    
Sbjct: 142 SVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAV-----------------LWTAM---- 180

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
                            ++ Y+  G+V    + F+ +P + L++WNA+++GY +N  A  
Sbjct: 181 -----------------VSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADD 223

Query: 132 VLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
            L L+R M +   V P+A T   VL  C++L A   G ++ Q         N  +  +L+
Sbjct: 224 ALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLV 283

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MY +CG+L  A  +F  M  + VV+W A+I GY  HG G+ A+ LF+ M   G+ P+  
Sbjct: 284 SMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWI 343

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            FV+VL+AC H GL D G+  F GM+  YG++P  +HY+CMVDLL RAG+L  A++LI S
Sbjct: 344 TFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRS 403

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M  EP  + +G LL AC+++KN+E AELA GK+I+ +P + G YV L+NIY+ A   D +
Sbjct: 404 MPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDV 463

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
            RVR  M++  + K PGYS++E+KG +H F   DR H Q   +Y + +KL  L +     
Sbjct: 464 SRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQ---LYLIHEKLGQLAERMKAM 520

Query: 431 KRSDQKNSEEHLNDTEV-------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFI 483
                 +   H  D  +       HSEKLAI+FG+I+T+PG  + + KNLR+CGDCH   
Sbjct: 521 GYVPDLDFVLHDVDETLKVQMLMRHSEKLAISFGLISTAPGMTLRIFKNLRVCGDCHNAA 580

Query: 484 KLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K++SKI DR+ I+RD TRFHHF+ G CSC DYW
Sbjct: 581 KVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 613



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 115/246 (46%), Gaps = 10/246 (4%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L++ +   G  D  R+LF  +P + +++WN M+SG +++G       ++  M      
Sbjct: 84  NTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMP----V 139

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
            ++V++  ++S  A     S   E  +     G   +  L  A+++ Y   GN+ KA   
Sbjct: 140 RNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKG---DAVLWTAMVSGYMDIGNVVKAIEY 196

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK-SGIRPDGTAFVSVLSACSHAGL 264
           F+ MP + +VSW A++ GY  + H + A++LF  M++ + ++P+ +   SVL  CS+   
Sbjct: 197 FEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSA 256

Query: 265 TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
              G +  +    K  L       T +V +  + G L+ A +L   M    D   W A++
Sbjct: 257 LGFGKQ-IHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR-DVVAWNAMI 314

Query: 325 GACKIH 330
                H
Sbjct: 315 SGYAQH 320



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 118/285 (41%), Gaps = 34/285 (11%)

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQN-G 127
           C C  +        S+    +   V+ G +    + F   P K   T+N +++GYA+  G
Sbjct: 4   CRCPFLASARSHTCSLSTVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALG 63

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN- 186
                  L+  + +    PDAV++   L SC      + G           F S P  + 
Sbjct: 64  RLADARHLFDRIPT----PDAVSY-NTLLSCHFASGDADGAR-------RLFASMPVRDV 111

Query: 187 ---NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
              N +++  ++ G +++A+A+F  MP +  VSW A++ G+        A + F    + 
Sbjct: 112 VSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEK 171

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
           G   D   + +++S     G   K +EYF  M  +  +      +  +V    +    ++
Sbjct: 172 G---DAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVS-----WNAVVAGYVKNSHADD 223

Query: 304 ALELIESML----VEPDGAVWGALLGACKIHKNVELAELAFGKVI 344
           AL L  +M+    V+P+ +   ++L  C       L+ L FGK I
Sbjct: 224 ALRLFRTMVREANVQPNASTLSSVLLGCS-----NLSALGFGKQI 263



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 54/102 (52%), Gaps = 1/102 (0%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM- 67
           T   V +NA+ISGY  +    EA++LF +M+++GVE N +T + +L  C+  G    G+ 
Sbjct: 304 TRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIR 363

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP 109
           C   +   +G++      +C++ +  + G ++    L   +P
Sbjct: 364 CFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMP 405



 Score = 46.2 bits (108), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 71/176 (40%), Gaps = 17/176 (9%)

Query: 185 LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYG-IHGHGEVAVQLFDEMLKS 243
           L+   +    R G+L  A   F   PRKT  ++  ++ GY    G    A  LFD +   
Sbjct: 19  LSTVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPT- 77

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
              PD  ++ ++LS    +G  D     F  M  +  +      +  MV  L ++G + E
Sbjct: 78  ---PDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVS-----WNTMVSGLSKSGAVEE 129

Query: 304 ALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF------GKVIKLEPMNTGY 353
           A  +  +M V  +   W A++      +++  AE  F      G  +    M +GY
Sbjct: 130 AKAVFLAMPVR-NSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGY 184


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 194/507 (38%), Positives = 302/507 (59%), Gaps = 5/507 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           YN +I G V +  + EA+ L+ +M E+G+E ++ T   +L  C     L  G+  H    
Sbjct: 99  YNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVF 158

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K GL++D  V N L++MY KCG++++   +F+Q+ EK + +W+++I  +A   +    L 
Sbjct: 159 KAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLM 218

Query: 135 LYREMKSLGVC-PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
           L  +M   G    +    V  LS+C HLG+ ++G  +   +  N    N  +  +LI+MY
Sbjct: 219 LLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMY 278

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
            +CG+L+K   +F  M  K   S+T +I G  IHG G  AV++F +ML+ G+ PD   +V
Sbjct: 279 VKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREAVRVFSDMLEEGLTPDDVVYV 338

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
            VLSACSHAGL ++GL+ F  M+ ++ ++P  +HY CMVDL+GRAG L EA +LI+SM +
Sbjct: 339 GVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPI 398

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
           +P+  VW +LL ACK+H N+E+ E+A   + +L   N G Y++L+N+Y+ A+    + R+
Sbjct: 399 KPNDVVWRSLLSACKVHHNLEIGEIAAENIFRLNKHNPGDYLVLANMYARAKKWANVARI 458

Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS 433
           R  M E+ L + PG+S VE    V+ F+  D++      IY M+ ++E  ++    T   
Sbjct: 459 RTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPICETIYDMIQQMEWQLKFEGYTPDM 518

Query: 434 DQ----KNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKI 489
            Q     + +E     + HS+KLAIAF +I TS G+ I + +NLR+C DCH + K +S I
Sbjct: 519 SQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPIRISRNLRMCNDCHTYTKFISVI 578

Query: 490 VDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +R+  VRD  RFHHFK G CSCKDYW
Sbjct: 579 YEREITVRDRNRFHHFKDGTCSCKDYW 605



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 131/301 (43%), Gaps = 50/301 (16%)

Query: 70  HCICVKFGLDLDFSVGNCLMT--MYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
           H   +K GL  D   G+ L+      + GS++Y   +F Q+ E G   +N MI G   + 
Sbjct: 51  HAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFSQIEEPGSFEYNTMIRGNVNSM 110

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
                L LY EM   G+ PD  T+  VL +C+ L A   G+++   +   G   + F+ N
Sbjct: 111 DLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFKAGLEVDVFVQN 170

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI-R 246
            LI+MY +CG ++ A  +F+ M  K+V SW++IIG +         + L  +M   G  R
Sbjct: 171 GLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHR 230

Query: 247 PDGTAFVSVLSACSH-----------------------------------AGLTDKGLEY 271
            + +  VS LSAC+H                                    G  +KGL  
Sbjct: 231 AEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCV 290

Query: 272 FYGM--KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE---PDGAVWGALLGA 326
           F  M  KN+Y        YT M+  L   G+  EA+ +   ML E   PD  V+  +L A
Sbjct: 291 FQNMAHKNRYS-------YTVMIAGLAIHGRGREAVRVFSDMLEEGLTPDDVVYVGVLSA 343

Query: 327 C 327
           C
Sbjct: 344 C 344


>gi|356555295|ref|XP_003545969.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Glycine max]
          Length = 626

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 189/513 (36%), Positives = 296/513 (57%), Gaps = 11/513 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
           ++ +N+L+SG+     +   + +F  MR E   E N +T+L ++  C        G C H
Sbjct: 117 SISWNSLVSGFSRIGDLGNCLRVFYTMRYEMAFEWNELTLLSVISACAFAKARDEGWCLH 176

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
           C  VK G++L+  V N  + MY K G VD   KLF  +PE+ +++WN+M++ + QNG+  
Sbjct: 177 CCAVKLGMELEVKVVNAFINMYGKFGCVDSAFKLFWALPEQNMVSWNSMLAVWTQNGIPN 236

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             +  +  M+  G+ PD  T + +L +C  L    +   +   I   G   N  +   L+
Sbjct: 237 EAVNYFNMMRVNGLFPDEATILSLLQACEKLPLGRLVEAIHGVIFTCGLNENITIATTLL 296

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           N+Y++ G L  +  +F  + +   V+ TA++ GY +HGHG+ A++ F   ++ G++PD  
Sbjct: 297 NLYSKLGRLNVSHKVFAEISKPDKVALTAMLAGYAMHGHGKEAIEFFKWTVREGMKPDHV 356

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            F  +LSACSH+GL   G  YF  M + Y +QP  +HY+CMVDLLGR G LN+A  LI+S
Sbjct: 357 TFTHLLSACSHSGLVMDGKYYFQIMSDFYRVQPQLDHYSCMVDLLGRCGMLNDAYRLIKS 416

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M +EP+  VWGALLGAC++++N+ L + A   +I L P +   Y++LSNIYS A      
Sbjct: 417 MPLEPNSGVWGALLGACRVYRNINLGKEAAENLIALNPSDPRNYIMLSNIYSAAGLWSDA 476

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
            +VR +M+ +   ++ G S++E   ++H F+V D +H  + +I+R   KLE ++++    
Sbjct: 477 SKVRALMKTKVFIRNAGCSFIEHGNKIHRFVVDDYSHPDSDKIHR---KLEEIMRKIKEV 533

Query: 431 KRSDQKNSEEHLNDTEV-------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFI 483
               +  S  H  D EV       HSEK+A+AFG++ ++    +V++KNLRIC DCH   
Sbjct: 534 GFVSETESILHDVDEEVKTDMINKHSEKIALAFGLLVSNADMPLVIIKNLRICLDCHNTA 593

Query: 484 KLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K VS I  R  I+RD+ RFHHF  G CSC DYW
Sbjct: 594 KFVSLIEKRTIIIRDSKRFHHFSDGLCSCADYW 626



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 167/348 (47%), Gaps = 32/348 (9%)

Query: 68  CCHCICVKFGLDLDFS---VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYA 124
           CC  I  +    LD+    +G+ L++ Y+  GS    +KLFD++P K  I+WN+++SG++
Sbjct: 69  CCRVIHARVIKSLDYRDGFIGDQLVSCYLNMGSTPDAQKLFDEMPHKDSISWNSLVSGFS 128

Query: 125 QNGLATHVLELYREMK-SLGVCPDAVTFVGVLSSCA-----------HLGAHSVGLEVEQ 172
           + G   + L ++  M+  +    + +T + V+S+CA           H  A  +G+E+E 
Sbjct: 129 RIGDLGNCLRVFYTMRYEMAFEWNELTLLSVISACAFAKARDEGWCLHCCAVKLGMELEV 188

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
           ++            NA INMY + G +  A  +F  +P + +VSW +++  +  +G    
Sbjct: 189 KVV-----------NAFINMYGKFGCVDSAFKLFWALPEQNMVSWNSMLAVWTQNGIPNE 237

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
           AV  F+ M  +G+ PD    +S+L AC    L  + +E  +G+    GL       T ++
Sbjct: 238 AVNYFNMMRVNGLFPDEATILSLLQACEKLPL-GRLVEAIHGVIFTCGLNENITIATTLL 296

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMN 350
           +L  + G+LN + ++    + +PD     A+L    +H + + A   F   ++  ++P +
Sbjct: 297 NLYSKLGRLNVSHKVFAE-ISKPDKVALTAMLAGYAMHGHGKEAIEFFKWTVREGMKPDH 355

Query: 351 TGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKK--DPGYSYVELKGR 396
             +  LLS        +DG    ++M    R++   D     V+L GR
Sbjct: 356 VTFTHLLSACSHSGLVMDGKYYFQIMSDFYRVQPQLDHYSCMVDLLGR 403


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 201/532 (37%), Positives = 300/532 (56%), Gaps = 22/532 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD   ++    V +N ++S YV N    +A+ L+ +M+   +  + VT + LL  C   
Sbjct: 217 VFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRMQ---LRPDKVTYVSLLSACSSA 273

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             + LG   H   V   L+ +  VGN L++MY KCGS    R +FD++ ++ +I+W  +I
Sbjct: 274 EDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTII 333

Query: 121 SGYAQNGLATHVLELYREM-------KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQ 173
           S Y +  L      L+++M        S  V PDA+ FV +L++CA + A   G  V +Q
Sbjct: 334 SAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQ 393

Query: 174 IQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM-PRKTVVSWTAIIGGYGIHGHGEV 232
             + G  S+  +  A++N+Y +CG +++AR IFD +  R  V  W A+I  Y   G    
Sbjct: 394 AASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQSHE 453

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY-GLQPGPEHYTCM 291
           A++LF  M   G+RPD  +FVS+L ACSH GL D+G  YF  M  +Y  +    +H+ C+
Sbjct: 454 ALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCV 513

Query: 292 VDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351
            DLLGR G+L EA E +E + V+PD   W +LL AC+ H++++ A+    K+++LEP   
Sbjct: 514 ADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCA 573

Query: 352 GYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTV 411
             YV LSNIY+E +    + +VR  M E+ +KK+ G S +E+   +H F  GD  H +  
Sbjct: 574 TGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNR 633

Query: 412 EIYRMLDKLENLVQEHDGTKRS-------DQKNSEEHLNDTEVHSEKLAIAFGIINTSPG 464
           EI   L KL + ++E      +       D++  E  L     HSE+LAIA G+I+T  G
Sbjct: 634 EIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFS---HSERLAIALGLISTPLG 690

Query: 465 TEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           T + V KNLR+C DCH   KL+SKI  R+ +VRD TRFH FK G CSC+DYW
Sbjct: 691 TPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGKCSCQDYW 742



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 174/329 (52%), Gaps = 13/329 (3%)

Query: 6   IKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWL 65
           ++ T   + ++ +   + L+  V EA+  F  M   G++     M+ +L  C  P  +  
Sbjct: 119 MERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQD 178

Query: 66  GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE--KGLITWNAMISGY 123
           G   H      G + +  V N +MTMY +CG+V+  RK+FD + E  + +++WN M+S Y
Sbjct: 179 GRMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTY 238

Query: 124 AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP 183
             N      ++LY+ M+   + PD VT+V +LS+C+      +G  + +QI  +    N 
Sbjct: 239 VHNDRGKDAIQLYQRMQ---LRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNV 295

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML-- 241
            + NAL++MYA+CG+  +ARA+FD M +++++SWT II  Y        A  LF +ML  
Sbjct: 296 IVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLEL 355

Query: 242 -KSG----IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
            K+G    ++PD  AFV++L+AC+     ++G +         GL       T +V+L G
Sbjct: 356 EKNGSSQRVKPDALAFVTILNACADVSALEQG-KMVSEQAASCGLSSDKAVGTAVVNLYG 414

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLG 325
           + G++ EA  + +++   PD  +W A++ 
Sbjct: 415 KCGEIEEARRIFDAVCSRPDVQLWNAMIA 443



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 134/251 (53%), Gaps = 6/251 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +  L++ + ++    E +    +MR+ GV  ++VT +  L  C DP  L  G+  H + V
Sbjct: 26  WTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPESLRDGIRIHQMVV 85

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE-KGLITWNAMISGYAQNGLATHVL 133
              L++D  V N L+ MY KCGS+ + +++F ++   + +I+W+ M   +A +G     L
Sbjct: 86  DSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGNVWEAL 145

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
             +R M  LG+       V +LS+C+       G  +   I  +GF S   + NA++ MY
Sbjct: 146 RHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIALSGFESELLVANAVMTMY 205

Query: 194 ARCGNLKKARAIFDGMPR--KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
            RCG +++AR +FD M    + VVSW  ++  Y  +  G+ A+QL+  M    +RPD   
Sbjct: 206 GRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRM---QLRPDKVT 262

Query: 252 FVSVLSACSHA 262
           +VS+LSACS A
Sbjct: 263 YVSLLSACSSA 273



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 134/270 (49%), Gaps = 4/270 (1%)

Query: 91  MYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVT 150
           MY  C S    +  FD + ++ L +W  +++ +A +G +   L     M+  GV PDAVT
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
           F+  L SC    +   G+ + Q +  +    +P ++NAL+NMY +CG+L  A+ +F  M 
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKME 120

Query: 211 R-KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
           R + V+SW+ + G + +HG+   A++ F  ML  GI+   +A V++LSACS   L   G 
Sbjct: 121 RTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDG- 179

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM-LVEPDGAVWGALLGACK 328
              +      G +        ++ + GR G + EA ++ ++M     D   W  +L +  
Sbjct: 180 RMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIML-STY 238

Query: 329 IHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           +H +     +   + ++L P    Y  LLS
Sbjct: 239 VHNDRGKDAIQLYQRMQLRPDKVTYVSLLS 268


>gi|414876780|tpg|DAA53911.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 491

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 187/493 (37%), Positives = 292/493 (59%), Gaps = 10/493 (2%)

Query: 31  AVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMT 90
           A+ LF +M+    + +++    LL +      + +G   H   +  GL L+  +GN L+ 
Sbjct: 2   ALQLFREMQTLSFDRHTLPFASLLSVAGALPDIKIGRQIHAQLILLGLTLEDFMGNALID 61

Query: 91  MYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVT 150
           MY KCG +D  + +F    +K  I+W A+I+G  QNG     L+L+  M+  G+ PD  T
Sbjct: 62  MYSKCGMLDAAKTIFANKSDKTAISWTALITGCVQNGQHEEALQLFCNMRRAGLSPDRAT 121

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
              ++ S + LG   +G ++   +  +G  S+ F  +AL++MYA+CG L +A   F+ MP
Sbjct: 122 CSSIIKSSSSLGVIGIGRQLHAYLTTSGHMSSVFSGSALLDMYAKCGCLDEAIRTFNEMP 181

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270
            K  ++W A+I  Y  +G  + A+++FD ML  G  PD   F+SVL+ACSH GL ++ ++
Sbjct: 182 EKNSITWNAVISAYAQYGQAKNAIRMFDSMLHCGFCPDPVTFLSVLAACSHNGLAEECMK 241

Query: 271 YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           YF  M+    + P  EHY+C++D LGRAG  ++  ++++ M  E D  +W ++L +C+I+
Sbjct: 242 YFDLMRYYNSMSPWKEHYSCVIDALGRAGCFDKIQKVLDEMPFEADPVIWSSILHSCRIY 301

Query: 331 KNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSY 390
            N +LA +A   +  + P +   YV+LSNIY++A N +G  RV+ +MR+R ++K+ G S+
Sbjct: 302 GNQDLATVAAENLFTMVPTDATAYVILSNIYAKAGNWEGAARVKKIMRDRGVRKESGNSW 361

Query: 391 VELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDT----- 445
           VE+K ++++F     N H    I  + ++LE L +E D        +   H+ D      
Sbjct: 362 VEIKQKIYMF---SSNDHTNPMIDEIKEELERLYEEMDKQGYEPDTSCALHMVDNKQKLE 418

Query: 446 --EVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFH 503
             + HSE+LAIAF +INT PGT I VMKNL  C DCH  IK++SKIV+R  IVRD+ RFH
Sbjct: 419 SLKYHSERLAIAFALINTPPGTPITVMKNLSACLDCHAAIKMISKIVNRDIIVRDSRRFH 478

Query: 504 HFKSGFCSCKDYW 516
           HFK GFCSC DYW
Sbjct: 479 HFKDGFCSCGDYW 491



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 153/330 (46%), Gaps = 21/330 (6%)

Query: 7   KSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLG 66
           KS    + + ALI+G V N    EA+ LF  MR  G+  +  T   ++      G + +G
Sbjct: 79  KSDKTAISWTALITGCVQNGQHEEALQLFCNMRRAGLSPDRATCSSIIKSSSSLGVIGIG 138

Query: 67  MCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQN 126
              H      G       G+ L+ MY KCG +D   + F+++PEK  ITWNA+IS YAQ 
Sbjct: 139 RQLHAYLTTSGHMSSVFSGSALLDMYAKCGCLDEAIRTFNEMPEKNSITWNAVISAYAQY 198

Query: 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ-ANGFGSNPFL 185
           G A + + ++  M   G CPD VTF+ VL++C+H G     ++    ++  N        
Sbjct: 199 GQAKNAIRMFDSMLHCGFCPDPVTFLSVLAACSHNGLAEECMKYFDLMRYYNSMSPWKEH 258

Query: 186 NNALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
            + +I+   R G   K + + D MP     V W++I+    I+G+ ++A  +  E L + 
Sbjct: 259 YSCVIDALGRAGCFDKIQKVLDEMPFEADPVIWSSILHSCRIYGNQDLAT-VAAENLFTM 317

Query: 245 IRPDGTAFVSVLSACSHAG-----------LTDKGLEYFYG-----MKNKYGLQPGPEHY 288
           +  D TA+V + +  + AG           + D+G+    G     +K K  +    +H 
Sbjct: 318 VPTDATAYVILSNIYAKAGNWEGAARVKKIMRDRGVRKESGNSWVEIKQKIYMFSSNDHT 377

Query: 289 TCMVDLLGRAGQLNEALELIESMLVEPDGA 318
             M+D +    +L    E ++    EPD +
Sbjct: 378 NPMIDEIKE--ELERLYEEMDKQGYEPDTS 405


>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 188/499 (37%), Positives = 302/499 (60%), Gaps = 13/499 (2%)

Query: 30  EAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCL 88
           +A+ +F +M E+G VE +  T   LL  C     L  G   H    K GLDLD  VGN L
Sbjct: 108 QAIEIFYRMLEEGSVEPDKHTFPFLLKACAYVFALSEGRQAHAQIFKLGLDLDVYVGNSL 167

Query: 89  MTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDA 148
           + +Y  CG +    K+F+++P + L++WN MI  Y Q+GL  + L+L+ EM++    PD 
Sbjct: 168 IHLYASCGCLSMALKVFEKMPLRSLVSWNVMIDAYVQSGLFENALKLFVEMQN-SFEPDG 226

Query: 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGS---NPFLNNALINMYARCGNLKKARAI 205
            T   ++S+CA +GA S+G+     +     G+   +  +N++L++MY++CG+L+ A+ +
Sbjct: 227 YTMQSIVSACAGIGALSLGMWAHAYVLRKASGAMAGDVLINSSLVDMYSKCGSLRMAQQV 286

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK-SGIRPDGTAFVSVLSACSHAGL 264
           F+ MP+  + SW ++I    +HG G+ A+Q F  +++     P+   FV VLSAC+H G+
Sbjct: 287 FETMPKHDLNSWNSMILALAMHGRGQAALQCFSRLVEMEKFLPNSVTFVGVLSACNHGGM 346

Query: 265 TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
              G +YF  M N Y ++P  EHY C+VDLL R+G ++EALEL+ +M ++PD  +W +LL
Sbjct: 347 VADGRKYFDMMVNDYKIEPRLEHYGCLVDLLSRSGFIDEALELVANMHIKPDAVIWRSLL 406

Query: 325 GAC-KIHKNVELAELAFGKVIKLEP-MNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRL 382
            AC K +  VEL+E    K+++ E  +++G YV+LS +Y+ AR  + +  +R +M +  +
Sbjct: 407 DACYKQNAGVELSEEVAFKILQSEKTISSGVYVMLSRVYASARQWNDVGIIRKVMTDMGV 466

Query: 383 KKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHL 442
            K+PG S +E+ G  H F  GD +H +  EIY ++D +E  ++    +    Q    +  
Sbjct: 467 TKEPGCSSIEIDGISHEFFAGDTSHPRIKEIYGVIDLIEEKLERRGYSPDCSQATMVDEP 526

Query: 443 NDTE-----VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVR 497
           ++ +     +HSE+LAIAFG++N  PGT + + KNLR+C DCH   KL+S+I + + I+R
Sbjct: 527 DNIKQQSLKLHSERLAIAFGLLNLKPGTPVRIFKNLRVCNDCHQVTKLISEIFNVEIIMR 586

Query: 498 DATRFHHFKSGFCSCKDYW 516
           D  RFHHFK G CSC D+W
Sbjct: 587 DRNRFHHFKHGMCSCMDFW 605



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 156/316 (49%), Gaps = 15/316 (4%)

Query: 81  DFSVGNCLMTMYVKCGSV------DYGRKLFDQVPEKGLITWNAMISGYAQN-GLATHVL 133
           +FS  N  + +Y +   V      DY  ++F+Q+       WN +I   A++       +
Sbjct: 51  NFSTHNSSLFLYSRILHVSSLIDFDYACRVFNQIDNPNSFMWNTLIGACARSLDRKEQAI 110

Query: 134 EL-YREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           E+ YR ++   V PD  TF  +L +CA++ A S G +   QI   G   + ++ N+LI++
Sbjct: 111 EIFYRMLEEGSVEPDKHTFPFLLKACAYVFALSEGRQAHAQIFKLGLDLDVYVGNSLIHL 170

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA CG L  A  +F+ MP +++VSW  +I  Y   G  E A++LF EM ++   PDG   
Sbjct: 171 YASCGCLSMALKVFEKMPLRSLVSWNVMIDAYVQSGLFENALKLFVEM-QNSFEPDGYTM 229

Query: 253 VSVLSACSHAGLTDKGL-EYFYGMKNKYGLQPGPEHY-TCMVDLLGRAGQLNEALELIES 310
            S++SAC+  G    G+  + Y ++   G   G     + +VD+  + G L  A ++ E+
Sbjct: 230 QSIVSACAGIGALSLGMWAHAYVLRKASGAMAGDVLINSSLVDMYSKCGSLRMAQQVFET 289

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE---PMNTGYYVLLSNIYSEARNL 367
           M  + D   W +++ A  +H   + A   F +++++E   P +  +  +LS         
Sbjct: 290 M-PKHDLNSWNSMILALAMHGRGQAALQCFSRLVEMEKFLPNSVTFVGVLSACNHGGMVA 348

Query: 368 DGIMRVRMMMRERRLK 383
           DG     MM+ + +++
Sbjct: 349 DGRKYFDMMVNDYKIE 364


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 194/513 (37%), Positives = 296/513 (57%), Gaps = 4/513 (0%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           +T     +NA+I G+  N    +A+  + +M   G+  +  +++ LL  C   G L  G 
Sbjct: 478 NTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGK 537

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
             H   ++ GL+++  V   L+++Y  C    YGR  F+++ +K  + WNAM+SGY+QN 
Sbjct: 538 EIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNE 597

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
           L    L L+R+M S G+ PD +    +L +C+ L A  +G EV      N    + F+  
Sbjct: 598 LPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVAC 657

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           +L++MYA+ G L  ++ IF+ +  K V SW  +I G+G+HG G  AV+LF++M +S  +P
Sbjct: 658 SLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQP 717

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           D   F+ VL AC HAGL  +GL Y   M+  Y L+P  EHY C++D+LGRAG+LNEAL  
Sbjct: 718 DRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNF 777

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNL 367
           I  M  EPD  +W +LL +   + ++E+ E    K++ LE      Y+LLSN+Y+ A   
Sbjct: 778 INEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKW 837

Query: 368 DGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH 427
           D +  VR  M++  L+KD G S++EL+G+V+ F+ G+ ++  + EI +M ++LE  + E 
Sbjct: 838 DVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEI 897

Query: 428 DGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFI 483
             T        +    E     + HSEK+AI FG +NT  GT + + KNLRIC DCH   
Sbjct: 898 GYTPDCSCVLHELEEVEKRKILKGHSEKVAICFGFLNTKEGTTLRISKNLRICRDCHNAA 957

Query: 484 KLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K +SK   R+ ++RD  RFHHFK G CSC DYW
Sbjct: 958 KYISKAAKREIVIRDNKRFHHFKKGICSCGDYW 990



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 171/369 (46%), Gaps = 42/369 (11%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEI--NSVTMLCLLPICVDPGYLWLGMCCH 70
           + +N+LI G+  N    EA   F  + E G  +  +  TM+ LLP+C   G + +GM  H
Sbjct: 277 ISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIH 336

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
            + VK GL  +  V N L+ MY KCG +     LF ++  K +++WN+MI  Y++ G   
Sbjct: 337 GMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVF 396

Query: 131 HVLELYRE--MKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
              +L R+  M+   +  + VT + +L +C           +      + F     +NNA
Sbjct: 397 ETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNA 456

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
            I  YA+CG+L  A  +F GM  K+V SW A+IGG+  +G    A+  + EM + GI PD
Sbjct: 457 FIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPD 516

Query: 249 GTAFVSVLSACSHAGLTDKGLE-----------------------YFYGMKNKYGL---- 281
             + VS+L AC   GL   G E                       YF+  K  YG     
Sbjct: 517 DFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFE 576

Query: 282 QPGPEHYTCMVDLLGRAGQ---LNEALELIESML---VEPDGAVWGALLGACKIHKNVEL 335
           + G ++  C   +L    Q    NEAL L   ML   +EPD     ++LGAC      +L
Sbjct: 577 RMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACS-----QL 631

Query: 336 AELAFGKVI 344
           + L  GK +
Sbjct: 632 SALGLGKEV 640



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/351 (29%), Positives = 156/351 (44%), Gaps = 35/351 (9%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKM--REQGVEINSVTMLCLLPICVDPGYLWLGMCC 69
            V +N++I  Y     V E   L  KM   E+ +E+N VT+L LLP C++   L      
Sbjct: 379 VVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRAL 438

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   ++        + N  +  Y KCGS+ +   +F  +  K + +WNA+I G+AQNG  
Sbjct: 439 HGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDP 498

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              L+ Y EM  LG+ PD  + V +L +C  LG    G E+   +  NG   N F+  +L
Sbjct: 499 IKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSL 558

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           +++Y  C      R  F+ M  K  V W A++ GY  +     A+ LF +ML  G+ PD 
Sbjct: 559 LSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDE 618

Query: 250 TAFVSVLSACSHAGLTDKGLE-YFYGMKNK---------------------------YGL 281
            A  S+L ACS       G E + + +KN                            +  
Sbjct: 619 IAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNR 678

Query: 282 QPGPE--HYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGAC 327
             G E   +  M+   G  GQ N+A+EL E M     +PD   +  +L AC
Sbjct: 679 LNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQAC 729



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 85/234 (36%), Positives = 128/234 (54%), Gaps = 11/234 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICVD 59
           VFD  +        +NAL+SGYV N L  EA+  F ++      + ++ T  CL+  C  
Sbjct: 165 VFDRLLNKNLFQ--WNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTG 222

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              + LG   H + VK GL +D  VGN ++ +Y KCG +D   +LFD++PE+ LI+WN++
Sbjct: 223 KCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSL 282

Query: 120 ISGYAQNGLATHVLELYREMKSL-----GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
           I G+++NG     LE YR  +SL     G+ PD  T V +L  C+  G   VG+ +    
Sbjct: 283 IRGFSENGFW---LEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMA 339

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
              G      + NALI+MY++CG L +A  +F  +  K+VVSW ++IG Y   G
Sbjct: 340 VKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREG 393



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 133/264 (50%), Gaps = 17/264 (6%)

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           +CV      DF +   L+TMY  CG     R +FD++  K L  WNA++SGY +N L   
Sbjct: 133 LCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDE 192

Query: 132 VLELYREMKSLG-VCPDAVTFVGVLSSCA-----HLGAHSVGLEVEQQIQANGFGSNPFL 185
            +  + E+ S+    PD  TF  ++ +C      HLG    G+ V+      G   + F+
Sbjct: 193 AIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKM-----GLIMDLFV 247

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS-- 243
            NA+I +Y +CG L +A  +FD MP + ++SW ++I G+  +G    A + F  +L+S  
Sbjct: 248 GNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGD 307

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
           G+ PD    V++L  CS  G  D G+   +GM  K GL         ++D+  + G L+E
Sbjct: 308 GLIPDVATMVTLLPVCSGEGNVDVGM-VIHGMAVKLGLVHELMVCNALIDMYSKCGCLSE 366

Query: 304 ALELIESMLVEPDGAV-WGALLGA 326
           A  L     +E    V W +++GA
Sbjct: 367 AAILFRK--IENKSVVSWNSMIGA 388


>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 192/507 (37%), Positives = 301/507 (59%), Gaps = 5/507 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           YN +I G V +  + EA+ L+ +M E+G+E ++ T   +L  C     L  G+  H    
Sbjct: 99  YNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVF 158

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             GL++D  V N L++MY KCG++++   +F+Q+ EK + +W+++I  +A   +    L 
Sbjct: 159 NAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLM 218

Query: 135 LYREMKSLGVC-PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
           L  +M   G    +    V  LS+C HLG+ ++G  +   +  N    N  +  +LI+MY
Sbjct: 219 LLGDMSREGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMY 278

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
            +CG+L+K   +F  M  K   S+T +I G  IHG G  A+++F +ML+ G+ PD   +V
Sbjct: 279 VKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREALRVFSDMLEEGLTPDDVVYV 338

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
            VLSACSHAGL  +G + F  M+ ++ ++P  +HY CMVDL+GRAG L EA +LI+SM +
Sbjct: 339 GVLSACSHAGLVKEGFQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPI 398

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
           +P+  VW +LL ACK+H N+E+ E+A   + KL   N G Y++L+N+Y+ A+    + R+
Sbjct: 399 KPNDVVWRSLLSACKVHHNLEIGEIAADNIFKLNKHNPGDYLVLANMYARAQKWANVARI 458

Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS 433
           R  M E+ L + PG+S VE    V+ F+  D++  Q   IY M+ ++E  ++    T   
Sbjct: 459 RTEMVEKNLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQMEWQLKFEGYTPDM 518

Query: 434 DQ----KNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKI 489
            Q     + +E     + HS+KLAIAF +I TS G+ + + +NLR+C DCH + K +S I
Sbjct: 519 SQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPVRISRNLRMCNDCHTYTKFISVI 578

Query: 490 VDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +R+  VRD+ RFHHFK G CSCKDYW
Sbjct: 579 YEREITVRDSNRFHHFKDGTCSCKDYW 605



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 132/301 (43%), Gaps = 50/301 (16%)

Query: 70  HCICVKFGLDLDFSVGNCLMT--MYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
           H   +K GL  D   G+ L+      + GS++Y   +F Q+ E G   +N MI G   + 
Sbjct: 51  HAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSM 110

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
                L LY EM   G+ PD  T+  VL +C+ L A   G+++   +   G   + F+ N
Sbjct: 111 DLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFNAGLEVDVFVQN 170

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI-R 246
            LI+MY +CG ++ A  +F+ M  K+V SW++IIG +         + L  +M + G  R
Sbjct: 171 GLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSREGRHR 230

Query: 247 PDGTAFVSVLSACSH-----------------------------------AGLTDKGLEY 271
            + +  VS LSAC+H                                    G  +KGL  
Sbjct: 231 AEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCV 290

Query: 272 FYGM--KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE---PDGAVWGALLGA 326
           F  M  KN+Y        YT M+  L   G+  EAL +   ML E   PD  V+  +L A
Sbjct: 291 FQNMAHKNRYS-------YTVMIAGLAIHGRGREALRVFSDMLEEGLTPDDVVYVGVLSA 343

Query: 327 C 327
           C
Sbjct: 344 C 344


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 193/500 (38%), Positives = 287/500 (57%), Gaps = 5/500 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  LISGY  +    +A+  F +M   G   N  T+  ++           G   H  
Sbjct: 127 VTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGF 186

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
           CVK G D +  VG+ L+ +Y + G +D  + +FD +  +  ++WNA+I+G+A+       
Sbjct: 187 CVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKA 246

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           LEL++ M   G  P   ++  +  +C+  G    G  V   +  +G     F  N L++M
Sbjct: 247 LELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDM 306

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+ G++  AR IFD + ++ VVSW +++  Y  HG G+ AV  F+EM + GIRP+  +F
Sbjct: 307 YAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISF 366

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +SVL+ACSH+GL D+G  Y+  MK K G+ P   HY  +VDLLGRAG LN AL  IE M 
Sbjct: 367 LSVLTACSHSGLLDEGWHYYELMK-KDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMP 425

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           +EP  A+W ALL AC++HKN EL   A   V +L+P + G +V+L NIY+     +   R
Sbjct: 426 IEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAAR 485

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYR----MLDKLENLVQEHD 428
           VR  M+E  +KK+P  S+VE++  +H+F+  D  H Q  EI R    +L K++ L    D
Sbjct: 486 VRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPD 545

Query: 429 GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
            +      + +E   + + HSEK+A+AF ++NT PG+ I + KN+R+CGDCH  IKL SK
Sbjct: 546 TSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASK 605

Query: 489 IVDRQFIVRDATRFHHFKSG 508
           +V R+ IVRD  RFHHFK  
Sbjct: 606 VVGREIIVRDTNRFHHFKDA 625



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 140/278 (50%), Gaps = 2/278 (0%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           LL  C     L  G   H   ++     D  +GN L+ MY KCGS++  RK+F+++P++ 
Sbjct: 66  LLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRD 125

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
            +TW  +ISGY+Q+      L  + +M   G  P+  T   V+ + A       G ++  
Sbjct: 126 FVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHG 185

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
                GF SN  + +AL+++Y R G +  A+ +FD +  +  VSW A+I G+      E 
Sbjct: 186 FCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEK 245

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
           A++LF  ML+ G RP   ++ S+  ACS  G  ++G ++ +    K G +        ++
Sbjct: 246 ALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQG-KWVHAYMIKSGEKLVAFAGNTLL 304

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           D+  ++G +++A ++ +  L + D   W +LL A   H
Sbjct: 305 DMYAKSGSIHDARKIFDR-LAKRDVVSWNSLLTAYAQH 341


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 190/504 (37%), Positives = 288/504 (57%), Gaps = 6/504 (1%)

Query: 18  LISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFG 77
           +IS Y  ++   +A  LF ++    V  N  ++  +L  C +   L  G   H   +K G
Sbjct: 316 MISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIG 375

Query: 78  LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYR 137
            + D  VGN LM  Y KC  +D   K+F  + +   ++WN ++ G++Q+GL    L ++ 
Sbjct: 376 HESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFC 435

Query: 138 EMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG 197
           EM++  +    VT+  VL +CA   +     ++   I+ + F ++  + N+LI+ YA+CG
Sbjct: 436 EMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCG 495

Query: 198 NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257
            ++ A  +F  +  + ++SW AII GY +HG    A++LFD M KS +  +   FV++LS
Sbjct: 496 YIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLS 555

Query: 258 ACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDG 317
            C   GL + GL  F  M+  +G++P  EHYTC+V LLGRAG+LN+AL+ I  +   P  
Sbjct: 556 VCCSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSA 615

Query: 318 AVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMM 377
            VW ALL +C IHKNV L   +  K++++EP +   YVLLSN+Y+ A +LD +  +R  M
Sbjct: 616 MVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSM 675

Query: 378 RERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS---- 433
           R   ++K PG S+VE+KG +H F VG  +H     I  ML+ L NL    +G        
Sbjct: 676 RNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWL-NLKTSREGYIPDINVV 734

Query: 434 -DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDR 492
               + E+      VHSE+LA+A+G++ T PG  I ++KNLR C DCH    ++SKIV R
Sbjct: 735 LHDVDKEQKTRMLWVHSERLALAYGLVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKR 794

Query: 493 QFIVRDATRFHHFKSGFCSCKDYW 516
           + IVRD  RFHHF+ G CSC DYW
Sbjct: 795 EIIVRDINRFHHFEDGKCSCGDYW 818



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 158/363 (43%), Gaps = 28/363 (7%)

Query: 16  NALISGYVLNSLVSEAVSLF-GKMREQGVEINSVTMLCLLPICVDPGYL------WLGMC 68
           + LI  Y L SLVS+A  +F G +R+  V   ++        C +  +        L + 
Sbjct: 201 SGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRCAQSCSLLAIS 260

Query: 69  C-----HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGY 123
           C     H   +K   D +  VG  L+ MY KCG +   R  F+ +P   +I  + MIS Y
Sbjct: 261 CARQGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRY 320

Query: 124 AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP 183
           AQ+       EL+  +    V P+  +   VL +C ++     G ++       G  S+ 
Sbjct: 321 AQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDL 380

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
           F+ NAL++ YA+C ++  +  IF  +     VSW  I+ G+   G GE A+ +F EM  +
Sbjct: 381 FVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAA 440

Query: 244 GIRPDGTAFVSVLSACS------HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
            +      + SVL AC+      HAG     +E       K            ++D   +
Sbjct: 441 QMPCTQVTYSSVLRACASTASIRHAGQIHCSIE-------KSTFNNDTVIGNSLIDTYAK 493

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYV 355
            G + +AL++ +  L+E D   W A++    +H     A   F ++ K  +E  +  +  
Sbjct: 494 CGYIRDALKVFQH-LMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVA 552

Query: 356 LLS 358
           LLS
Sbjct: 553 LLS 555



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 131/299 (43%), Gaps = 20/299 (6%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  L+  +        A +LF ++R +G E+N   +  +L + +      L    H  
Sbjct: 128 VSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSC 187

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K G D +  VG+ L+  Y  C  V     +F+ +  K  + W AM+S Y++N    + 
Sbjct: 188 AWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENA 247

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
                       C  + + + +  SCA  G H   ++     +       P +  AL++M
Sbjct: 248 FR----------CAQSCSLLAI--SCARQGIHGCAIKTLNDTE-------PHVGGALLDM 288

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG++K AR  F+ +P   V+  + +I  Y      E A +LF  +++S + P+  + 
Sbjct: 289 YAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSL 348

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            SVL AC++    D G +  +    K G +        ++D   +   ++ +L++  S+
Sbjct: 349 SSVLQACTNMVQLDFG-KQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSL 406



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 126/269 (46%), Gaps = 7/269 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N ++ G+  + L  EA+S+F +M+   +    VT   +L  C     +      HC 
Sbjct: 412 VSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCS 471

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K   + D  +GN L+  Y KCG +    K+F  + E+ +I+WNA+ISGYA +G A   
Sbjct: 472 IEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADA 531

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           LEL+  M    V  + +TFV +LS C   G  + GL +   ++ +  G  P + +   ++
Sbjct: 532 LELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRID-HGIKPSMEHYTCIV 590

Query: 191 NMYARCGNLKKARAIFDGMPR-KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP-D 248
            +  R G L  A      +P   + + W A++    IH +  VA+  F       I P D
Sbjct: 591 RLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKN--VALGRFSAEKILEIEPQD 648

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
            T +V + +  + AG  D+       M+N
Sbjct: 649 ETTYVLLSNMYAAAGSLDQVALLRKSMRN 677



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 70/145 (48%)

Query: 80  LDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM 139
           LD    N L+ MY K G +   R+LFD++PE+ ++++  ++  +AQ G       L+R +
Sbjct: 94  LDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRL 153

Query: 140 KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNL 199
           +  G   +      +L     + A  +   V       G   N F+ + LI+ Y+ C  +
Sbjct: 154 RWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLV 213

Query: 200 KKARAIFDGMPRKTVVSWTAIIGGY 224
             A  +F+G+ RK  V WTA++  Y
Sbjct: 214 SDAEHVFNGIVRKDAVVWTAMVSCY 238



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 56/130 (43%), Gaps = 9/130 (6%)

Query: 122 GYAQNGLATHVLELYREMKSLGVCP-----DAVTFVGVLSSCAHLGAHSVGLEVEQQI-Q 175
           G+A    A   LE   E+ SL + P     D+      L  C   G    G  V   + +
Sbjct: 30  GFAAYAAALQWLE--DELTSLAILPSVPGVDSFACARQLQGCIARGDARGGRAVHGHVVR 87

Query: 176 ANGFGS-NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
             G G  + F  N L+NMY + G L  AR +FD MP + +VS+  ++  +   G  E A 
Sbjct: 88  RGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAA 147

Query: 235 QLFDEMLKSG 244
            LF  +   G
Sbjct: 148 ALFRRLRWEG 157


>gi|357141422|ref|XP_003572219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Brachypodium distachyon]
          Length = 571

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 212/522 (40%), Positives = 293/522 (56%), Gaps = 24/522 (4%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVE-INSVTMLCLLPICV------DPGYLW 64
           T  YN  I           AV+L+  M    +   N+ T   LL  C        P    
Sbjct: 57  TFSYNTTIRSLAHGPRPHLAVALYRSMLLNPLSNPNNYTYPPLLAACARLLPAHPPREAA 116

Query: 65  LGMCCHCICVKFGLD-LDFSVGNCLMTMYVKCGSVDYGRKLFDQVP--EKGLITWNAMIS 121
            G   H    + GL+  D  +   +++ Y   G +   R++FD+ P  ++ L  WN+++ 
Sbjct: 117 AGTAVHASLFRRGLESRDRFISASMLSFYAAAGDLPAAREVFDRSPPNQRDLALWNSLLH 176

Query: 122 GYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGS 181
            Y   GL THVL L+R+M    V  D VT + V+S+C+HLGA   G             +
Sbjct: 177 AYLSQGLYTHVLRLFRQM----VATDEVTLLAVVSACSHLGALDTGRWAHAYHARTCRNT 232

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
              L  AL+NMY RCG+++ A ++F  M  K V +W+ +I G  ++G    A++LF EM 
Sbjct: 233 TRNLGTALLNMYMRCGDVESAWSVFHEMLDKDVRTWSVMIAGLAVNGLPRDALKLFAEMK 292

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301
             G+ PD     +VLSACSHAG+ D+G  + + M  +Y LQP  EHY C+VDLLGRAGQL
Sbjct: 293 NIGVDPDSITMTAVLSACSHAGMVDEGKMFLHCMPIEYHLQPTIEHYGCVVDLLGRAGQL 352

Query: 302 NEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY 361
            EAL LIE++  + D A+WGALL AC+ HKNV++ ++A  +++KL+P + G  V LSN Y
Sbjct: 353 EEALALIETVPFKADVALWGALLVACRAHKNVDMGQMAAMEILKLDPHHAGACVFLSNAY 412

Query: 362 SEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD--- 418
           + A   D +  VR  M+E R+ K PG S VEL G V+ F+ GD +H Q+  IY MLD   
Sbjct: 413 AAAGKWDLVQEVRSSMKEHRIYKPPGSSIVELDGVVYEFLSGDHSHPQSDRIYAMLDEVC 472

Query: 419 KLENLVQEHDGTKRSDQKNSEEHLNDTEV----HSEKLAIAFGIINTSPGTEIVVMKNLR 474
           K  +L      TK       EE   D EV    HSEKLA+A G+I+T  G  I ++KNLR
Sbjct: 473 KTLSLKGHRPSTKEVAFDIDEE---DKEVCISQHSEKLALALGLISTRRGAVIRIVKNLR 529

Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           IC DCH  +K+VS++ DR  +VRD  RFHHFK+G CSC DYW
Sbjct: 530 ICEDCHSVMKIVSEVYDRVIVVRDRNRFHHFKNGSCSCLDYW 571



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 141/292 (48%), Gaps = 21/292 (7%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD S  +      +N+L+  Y+   L +  + LF +M    V  + VT+L ++  C   
Sbjct: 157 VFDRSPPNQRDLALWNSLLHAYLSQGLYTHVLRLFRQM----VATDEVTLLAVVSACSHL 212

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  G   H    +   +   ++G  L+ MY++CG V+    +F ++ +K + TW+ MI
Sbjct: 213 GALDTGRWAHAYHARTCRNTTRNLGTALLNMYMRCGDVESAWSVFHEMLDKDVRTWSVMI 272

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA--------HSVGLEVEQ 172
           +G A NGL    L+L+ EMK++GV PD++T   VLS+C+H G         H + +E   
Sbjct: 273 AGLAVNGLPRDALKLFAEMKNIGVDPDSITMTAVLSACSHAGMVDEGKMFLHCMPIEYHL 332

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGE 231
           Q     +G        ++++  R G L++A A+ + +P K  V+ W A++     H + +
Sbjct: 333 QPTIEHYG-------CVVDLLGRAGQLEEALALIETVPFKADVALWGALLVACRAHKNVD 385

Query: 232 VAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP 283
           +      E+LK      G A V + +A + AG  D   E    MK     +P
Sbjct: 386 MGQMAAMEILKLDPHHAG-ACVFLSNAYAAAGKWDLVQEVRSSMKEHRIYKP 436


>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 178/425 (41%), Positives = 269/425 (63%), Gaps = 4/425 (0%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
           G VD  R+LFD +P++  + WNAM++GY + G +   L L+ EM+  GV    VT V VL
Sbjct: 204 GDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGVAVSEVTLVSVL 263

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
           ++CA +GA   G+ V   + + G   +  L  AL++MY++CG +  +  +F+ M  + + 
Sbjct: 264 TACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEVFETMRERNIY 323

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           +WT+ + G  ++G GE  ++LF  M  +G+ P+G  FV+VL  CS AGL ++G   F  M
Sbjct: 324 TWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRGCSVAGLVEEGRACFDSM 383

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVEL 335
           K+K+ ++P  EHY CMVDL GRAG+L++A++ I SM VEP   VWGALL A +IH NV+L
Sbjct: 384 KDKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPVEPHEGVWGALLNASRIHNNVDL 443

Query: 336 AELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKG 395
            + A  K+ ++E  N   +VLLSNIY+E+ N  G+ +VR MM+ + +KK PG S +E+ G
Sbjct: 444 GKHAMHKLTEIESKNDAAHVLLSNIYAESHNWKGVSKVRNMMKSKGVKKMPGCSAIEVDG 503

Query: 396 RVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQK----NSEEHLNDTEVHSEK 451
           +VH F VG ++H +  +I  ML ++ + ++       + +       EE      +HSEK
Sbjct: 504 KVHEFFVGSKSHPRYKDIQTMLAEMSHRLRLQGYAANTKEVLFDIEEEEKEGAISLHSEK 563

Query: 452 LAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCS 511
           LA+AFG+I     T I ++KNLR+C DCH + KL+SK+ DR+ ++RD  RFHHFK G CS
Sbjct: 564 LALAFGLITLPEDTVIRIVKNLRVCKDCHDYTKLISKVFDREIVMRDRNRFHHFKHGACS 623

Query: 512 CKDYW 516
           C+DYW
Sbjct: 624 CRDYW 628



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 142/289 (49%), Gaps = 10/289 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD   +  H  V +NA+++GYV      EA+ LF +M++ GV ++ VT++ +L  C   
Sbjct: 212 LFDGMPQRDH--VAWNAMLTGYVRVGRSREALGLFDEMQKAGVAVSEVTLVSVLTACAQM 269

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  GM  H      G+ +  ++G  L+ MY KCG V    ++F+ + E+ + TW + +
Sbjct: 270 GALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEVFETMRERNIYTWTSAL 329

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SG A NG+    LEL++ M+S G+ P+ VTFV VL  C+  G    G      ++ +   
Sbjct: 330 SGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRGCSVAGLVEEGRACFDSMK-DKHK 388

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLF 237
             P+L +   ++++Y R G L  A    + MP +     W A++    IH + ++     
Sbjct: 389 VEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPVEPHEGVWGALLNASRIHNNVDLGKHAM 448

Query: 238 DEMLKSGIRPDGT-AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
            ++ +   + D     +S + A SH     KG+     M    G++  P
Sbjct: 449 HKLTEIESKNDAAHVLLSNIYAESH---NWKGVSKVRNMMKSKGVKKMP 494



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 135/350 (38%), Gaps = 87/350 (24%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           Y R L  Q P   L+  N ++   A+          +RE   L + PD  +F  ++ +  
Sbjct: 67  YARLLLPQRPAT-LLAHNGLLRALARGPCPGLAFAAFRE---LPLAPDHYSFTFLVRAAT 122

Query: 160 HLGAHSVGLEVEQQIQAN-------------GFGSNPFLNNALINMYARCGNL------- 199
            L A +    V   +  N             G  ++P + +  ++MYA  G++       
Sbjct: 123 SLAAAASATPVPTDVAVNLLAGSVHAAAFQHGHATDPHVQSGAVSMYAAVGDVGAVRAAF 182

Query: 200 ------------------------KKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQ 235
                                     AR +FDGMP++  V+W A++ GY   G    A+ 
Sbjct: 183 AEIVSPDVVCVTAMLGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALG 242

Query: 236 LFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295
           LFDEM K+G+       VSVL+AC+  G  ++G+ + +      G++      T +VD+ 
Sbjct: 243 LFDEMQKAGVAVSEVTLVSVLTACAQMGALERGM-WVHSYVCSRGMRVSVTLGTALVDMY 301

Query: 296 GRAGQLNEALELIESML----------------------------------VEPDGAVWG 321
            + G +  ++E+ E+M                                   +EP+G  + 
Sbjct: 302 SKCGVVTMSMEVFETMRERNIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFV 361

Query: 322 ALLGACKIHKNVELAELAFGKVI---KLEPMNTGYYVLLSNIYSEARNLD 368
           A+L  C +   VE     F  +    K+EP    +Y  + ++Y  A  LD
Sbjct: 362 AVLRGCSVAGLVEEGRACFDSMKDKHKVEPW-LEHYGCMVDLYGRAGRLD 410


>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 558

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 191/510 (37%), Positives = 293/510 (57%), Gaps = 9/510 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T+ YN +I  +      S ++  F  MR  G+ +++ T   +L  C     L + +  H 
Sbjct: 53  TIAYNTIIRSHS-RFFPSHSLFYFFSMRSNGIPLDNFTFPFVLKAC---SRLQINLHLHS 108

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + VK+GLD D  V N L+ +Y  CGS++   K+FD++ E+  ++W+ +I+ +  NG A+ 
Sbjct: 109 LIVKYGLDSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASE 168

Query: 132 VLELYREMK-SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
            L+L+ +M+    V PD VT + V+S+ +HLG   +G  V   I   G G +  L  ALI
Sbjct: 169 ALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGLGVSVALGTALI 228

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +M++RCG++ ++  +F+ M  + V++WTA+I G G+HG    A+ +F  M KSG++PD  
Sbjct: 229 DMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGVHGRSTEALAMFHSMRKSGVQPDYV 288

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            F  VL ACSH GL  +G + F  ++  Y + P  +HY CMVD+LGRAG LNEA + +E 
Sbjct: 289 TFSGVLVACSHGGLVKEGWDIFESIRKVYRMDPLLDHYGCMVDILGRAGLLNEAYDFVER 348

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M ++P+  +W  LLGAC  H N+ LAE    K+ K+     G  VLLSN+Y  A      
Sbjct: 349 MPMKPNSIIWRTLLGACVNHNNLGLAEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEK 408

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
             +R  MRE+R+ K+PG S + +   +H F+ GD +H Q+ +I + L  +   ++     
Sbjct: 409 ASIRSKMREKRIGKEPGCSSINVDQTIHEFVSGDNSHPQSEDITKFLSSIIGDLRNRGYM 468

Query: 431 KRSDQK----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
            ++         EE  +    HSEKLA+AF I++      I +MKNLRIC DCH F+K +
Sbjct: 469 MQTKNVLHDIEEEEREHSLSYHSEKLAVAFAILSMKDKRTIRIMKNLRICYDCHSFMKHI 528

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           S   +R+ I+RD  RFHHF+ G CSC DYW
Sbjct: 529 SVRFERKIIIRDRNRFHHFEKGLCSCHDYW 558



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 126/249 (50%), Gaps = 12/249 (4%)

Query: 88  LMTMYVKC-----GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL 142
           L T+ + C      S+ Y R +F ++P    I +N +I  +++    +H L  +  M+S 
Sbjct: 23  LRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTIIRSHSR-FFPSHSLFYFFSMRSN 81

Query: 143 GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202
           G+  D  TF  VL +C+ L    + L +   I   G  S+ F+ NALI +Y  CG+L+ A
Sbjct: 82  GIPLDNFTFPFVLKACSRL---QINLHLHSLIVKYGLDSDIFVQNALICVYGYCGSLEMA 138

Query: 203 RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM-LKSGIRPDGTAFVSVLSACSH 261
             +FD M  +  VSW+ +I  +  +G+   A+ LF++M L+  + PD    +SV+SA SH
Sbjct: 139 VKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISH 198

Query: 262 AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWG 321
            G  + G  +      + GL       T ++D+  R G ++E++ + E M V  +   W 
Sbjct: 199 LGDLELG-RWVRAFIGRLGLGVSVALGTALIDMFSRCGSIDESIVVFEKMAVR-NVLTWT 256

Query: 322 ALLGACKIH 330
           AL+    +H
Sbjct: 257 ALINGLGVH 265


>gi|125583346|gb|EAZ24277.1| hypothetical protein OsJ_08028 [Oryza sativa Japonica Group]
          Length = 613

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 187/491 (38%), Positives = 283/491 (57%), Gaps = 6/491 (1%)

Query: 32  VSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTM 91
           + LF  M + GVE +S T   +   C   G L  G       VK G   D    N L++ 
Sbjct: 123 LRLFVDMVDDGVEPDSYTFPFVFKACAQLGALQEGRQLQGHLVKLGFQRDEHSQNSLISF 182

Query: 92  YVKCGSVDYGRKLFDQVP--EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
           Y KCG  D  R+ F+Q+   E+   +W+A+++ Y + G     +E +  M   G  PD  
Sbjct: 183 YGKCGEADLARRAFEQMEDDEQTTASWSALLAAYTRAGRWAECVESFGAMVRAGWRPDES 242

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
           + V  LS+CAHLGAH VG  +   +  N    N F++ +L++MYA+CG ++ A A+FD M
Sbjct: 243 SMVSALSACAHLGAHDVGRSIHCALLRNTARLNTFMSTSLVDMYAKCGCIENAAAVFDAM 302

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
             K   +++A++ G  +HG G  A+++FD M++ G RPD   +V VL+ACS AGL ++GL
Sbjct: 303 DDKNAWTYSAMVSGLALHGDGRKALEVFDAMVREGHRPDAAVYVGVLNACSRAGLLEEGL 362

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
             F  M+ ++ L P  +HY CMVDL+ RAG+L++A  LI SM   P    W +LL AC+I
Sbjct: 363 RCFDRMRLEHKLTPNAQHYGCMVDLMARAGRLDDARALIGSMPTGPTDTAWRSLLNACRI 422

Query: 330 HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYS 389
           H N+ELAE A  ++ +L   N G Y++LS++++ A N D     R    +R L + PGYS
Sbjct: 423 HGNLELAERALQELERLGATNAGDYIILSDMHARAHNRDAAAARRTEAVDRGLAQAPGYS 482

Query: 390 YVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ----EHDGTKRSDQKNSEEHLNDT 445
            VE+ G  H F+  DR+H +  +IY ML ++E  ++      D ++ +     EE     
Sbjct: 483 AVEVHGATHRFVSQDRSHPRADDIYEMLHQMEWQLRFEGYTPDTSELALDAGEEEKRRVV 542

Query: 446 EVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHF 505
             HS+KLA+AFG+++T  G  + V+ NLR+  +CH +  L+S+I  R+ +VRD  RFH F
Sbjct: 543 AAHSQKLAMAFGLLSTPEGAPVRVVTNLRMSKECHAYSALISEIFGREIVVRDRNRFHRF 602

Query: 506 KSGFCSCKDYW 516
           K G CSC++YW
Sbjct: 603 KRGACSCRNYW 613



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 118/246 (47%), Gaps = 2/246 (0%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
            F++       T  ++AL++ Y      +E V  FG M   G   +  +M+  L  C   
Sbjct: 195 AFEQMEDDEQTTASWSALLAAYTRAGRWAECVESFGAMVRAGWRPDESSMVSALSACAHL 254

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G   +G   HC  ++    L+  +   L+ MY KCG ++    +FD + +K   T++AM+
Sbjct: 255 GAHDVGRSIHCALLRNTARLNTFMSTSLVDMYAKCGCIENAAAVFDAMDDKNAWTYSAMV 314

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ-ANGF 179
           SG A +G     LE++  M   G  PDA  +VGVL++C+  G    GL    +++  +  
Sbjct: 315 SGLALHGDGRKALEVFDAMVREGHRPDAAVYVGVLNACSRAGLLEEGLRCFDRMRLEHKL 374

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPR-KTVVSWTAIIGGYGIHGHGEVAVQLFD 238
             N      ++++ AR G L  ARA+   MP   T  +W +++    IHG+ E+A +   
Sbjct: 375 TPNAQHYGCMVDLMARAGRLDDARALIGSMPTGPTDTAWRSLLNACRIHGNLELAERALQ 434

Query: 239 EMLKSG 244
           E+ + G
Sbjct: 435 ELERLG 440


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 199/541 (36%), Positives = 288/541 (53%), Gaps = 36/541 (6%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T  +N +I G+  +     ++ L+ +M       N+ T   LL  C +   L      H 
Sbjct: 109 TFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHA 168

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP---------------------- 109
              K G + D    N L+  Y   G+      LFD++P                      
Sbjct: 169 QITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDI 228

Query: 110 ---------EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160
                    EK  I+W  MISGY Q G+    L+L+ EM++  V PD V+    LS+CA 
Sbjct: 229 ALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQ 288

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
           LGA   G  +   +       +  L   LI+MYA+CG++ +A  +F  + RK+V +WTA+
Sbjct: 289 LGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTAL 348

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           I GY  HGHG  A+  F EM K GI+P+   F +VL+ACS+ GL ++G   FY M+  Y 
Sbjct: 349 ISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYN 408

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
           L+P  EHY C+VDLL RAG L+EA   I+ M ++P+  +WGALL AC+IHKN+EL E   
Sbjct: 409 LKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIG 468

Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400
             +I ++P + G YV  +NI++  +  D     R +M+E+ + K PG S + L+G  H F
Sbjct: 469 EILIAIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEF 528

Query: 401 MVGDRNHHQTVEIYRMLDKLENLVQEH---DGTKRSDQKNSEEHLNDTEV--HSEKLAIA 455
           + GDR+H +  +I      +   ++E+      +       ++   +T V  HSEKLAI 
Sbjct: 529 LAGDRSHPEIEKIQSKWKIMRRKLEENGYVPELEDMLLDLVDDDERETIVHQHSEKLAIT 588

Query: 456 FGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDY 515
           +G+I T PGT I +MKNLR+C DCH   KL+SKI  R  ++RD TRFHHF+ G CSC DY
Sbjct: 589 YGLIKTKPGTTIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDY 648

Query: 516 W 516
           W
Sbjct: 649 W 649



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 128/295 (43%), Gaps = 36/295 (12%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVD---YGRKLFDQVPEKGLITWNAMISGYAQN 126
           H   +K GL  D       ++  +   S D   Y + +FD         WN MI G++ +
Sbjct: 63  HARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCS 122

Query: 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
                 L LY+ M       +A TF  +L +C++L A     ++  QI   G+ ++ +  
Sbjct: 123 DEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYENDVYAV 182

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV-------------- 232
           N+LIN YA  GN K A  +FD +P+   VSW ++I GY   G  ++              
Sbjct: 183 NSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAI 242

Query: 233 -----------------AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
                            A+QLF EM  S + PD  +  + LSAC+  G  ++G ++ +  
Sbjct: 243 SWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQG-KWIHSY 301

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
             K  ++        ++D+  + G + EALE+ +++  +   A W AL+     H
Sbjct: 302 LTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQA-WTALISGYAYH 355


>gi|79527297|ref|NP_198857.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171829|sp|Q9FND6.1|PP411_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g40410, mitochondrial; Flags: Precursor
 gi|10178153|dbj|BAB11598.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|17065126|gb|AAL32717.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|30725418|gb|AAP37731.1| At5g40410 [Arabidopsis thaliana]
 gi|332007162|gb|AED94545.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 608

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 193/514 (37%), Positives = 292/514 (56%), Gaps = 13/514 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKM--REQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
           V +N+LISGY     + +   +  +M   E G   N VT L ++  CV  G    G C H
Sbjct: 98  VSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGSKEEGRCIH 157

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
            + +KFG+  +  V N  +  Y K G +    KLF+ +  K L++WN MI  + QNGLA 
Sbjct: 158 GLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWNTMIVIHLQNGLAE 217

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             L  +   + +G  PD  TF+ VL SC  +G   +   +   I   GF  N  +  AL+
Sbjct: 218 KGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFGGFSGNKCITTALL 277

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           ++Y++ G L+ +  +F  +     ++WTA++  Y  HG G  A++ F+ M+  GI PD  
Sbjct: 278 DLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHFELMVHYGISPDHV 337

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            F  +L+ACSH+GL ++G  YF  M  +Y + P  +HY+CMVDLLGR+G L +A  LI+ 
Sbjct: 338 TFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGRSGLLQDAYGLIKE 397

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M +EP   VWGALLGAC+++K+ +L   A  ++ +LEP +   YV+LSNIYS +      
Sbjct: 398 MPMEPSSGVWGALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVMLSNIYSASGLWKDA 457

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
            R+R +M+++ L +  G SY+E   ++H F+VGD +H ++ +I + L ++   ++   G 
Sbjct: 458 SRIRNLMKQKGLVRASGCSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSEMGY 517

Query: 431 KRSD--------QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLF 482
           K           +   EE +N    HSEK+A+AFG++  SP   I++ KNLRICGDCH  
Sbjct: 518 KSKTEFVLHDVGEDVKEEMINQ---HSEKIAMAFGLLVVSPMEPIIIRKNLRICGDCHET 574

Query: 483 IKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            K +S I  R+ I+RD+ RFHHF  G CSC DYW
Sbjct: 575 AKAISLIEKRRIIIRDSKRFHHFLDGSCSCSDYW 608



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 138/292 (47%), Gaps = 7/292 (2%)

Query: 41  QGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDY 100
             ++ N  +++  +  CV    + L    HC  VK        +G+ L+  Y++ G    
Sbjct: 28  HSLDANVSSLIAAVKSCVS---IELCRLLHCKVVKSVSYRHGFIGDQLVGCYLRLGHDVC 84

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM--KSLGVCPDAVTFVGVLSSC 158
             KLFD++PE+ L++WN++ISGY+  G      E+   M    +G  P+ VTF+ ++S+C
Sbjct: 85  AEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISAC 144

Query: 159 AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWT 218
            + G+   G  +   +   G      + NA IN Y + G+L  +  +F+ +  K +VSW 
Sbjct: 145 VYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWN 204

Query: 219 AIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278
            +I  +  +G  E  +  F+   + G  PD   F++VL +C   G+  +  +  +G+   
Sbjct: 205 TMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVV-RLAQGIHGLIMF 263

Query: 279 YGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
            G        T ++DL  + G+L ++  +    +  PD   W A+L A   H
Sbjct: 264 GGFSGNKCITTALLDLYSKLGRLEDSSTVFHE-ITSPDSMAWTAMLAAYATH 314


>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 597

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 208/514 (40%), Positives = 289/514 (56%), Gaps = 8/514 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  K       +N L  GYV N L  E+V L+ KMR+ GV  +  T   ++      
Sbjct: 65  VFDEMPKPR--IFLWNTLFKGYVRNQLPFESVLLYKKMRDLGVRPDEFTYPFVVKAISQL 122

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  G+  H   +K G +    V   L+ MY+K G +     LF+ +  K L+ WNA I
Sbjct: 123 GVLPCGVSLHAHVLKNGFECLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFI 182

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +   Q G +   LE + +M +  V  D+ T V +LS+C  LG+  +G E+  + +     
Sbjct: 183 AVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLDIGEEIYDRARKEEIE 242

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            N  + NA ++M+ +CG+ + AR +FD M ++ VVSW+ +I GY ++G    A+ LF  M
Sbjct: 243 CNIIVENARLDMHLKCGSTEAARVLFDDMKQRNVVSWSTMIVGYAMNGDSGEALALFTMM 302

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK--NKYGLQPGPEHYTCMVDLLGRA 298
              G+RP+   F+ VLSACSHAGL ++G  YF  M   N   L+P  EHY CMVDLLGR+
Sbjct: 303 QNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVRLNDKNLEPRKEHYACMVDLLGRS 362

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           G L EA E I+ M VEPD  +WGALLGAC +H+++ L +     +++  P    Y+VLLS
Sbjct: 363 GLLEEAYEFIKKMRVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLS 422

Query: 359 NIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD 418
           NIY+ A   D + +VR  MR+   KK   YS VE  G++H F  GD +H Q+  IY  LD
Sbjct: 423 NIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFDGKIHFFNRGDISHPQSKAIYEKLD 482

Query: 419 ----KLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLR 474
               K+ N+    D          EE  +    HSEKLAIAFG+IN   G  I VMKNLR
Sbjct: 483 EILKKIRNMGYVPDTGSVFHDVEMEEKESSLSHHSEKLAIAFGLINGRAGHPIRVMKNLR 542

Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSG 508
            C DCH+F K VS++  R+ I+RD  RFHHF++G
Sbjct: 543 TCDDCHVFSKFVSRLTSREIIMRDKNRFHHFRNG 576



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 103/203 (50%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H + ++ G     S+   L+   V  G + Y R++FD++P+  +  WN +  GY +N L 
Sbjct: 31  HAVVIRTGFSEKNSLLTQLLENLVLVGDMCYARQVFDEMPKPRIFLWNTLFKGYVRNQLP 90

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              + LY++M+ LGV PD  T+  V+ + + LG    G+ +   +  NGF     +   L
Sbjct: 91  FESVLLYKKMRDLGVRPDEFTYPFVVKAISQLGVLPCGVSLHAHVLKNGFECLGIVATEL 150

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           + MY + G L  A  +F+ M  K +V+W A I      G+  +A++ F++M    ++ D 
Sbjct: 151 VMMYMKFGELSSAEFLFESMQVKDLVAWNAFIAVCVQTGNSAIALEYFNKMCADAVQFDS 210

Query: 250 TAFVSVLSACSHAGLTDKGLEYF 272
              VS+LSAC   G  D G E +
Sbjct: 211 FTVVSMLSACGQLGSLDIGEEIY 233


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 194/513 (37%), Positives = 295/513 (57%), Gaps = 4/513 (0%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           +T     +NA+I G+  N    +A+  + +M   G+  +  +++ LL  C   G L  G 
Sbjct: 478 NTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGK 537

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
             H   ++ GL+++  V   L+++Y  C    YGR  F+ + +K  + WNAM+SGY+QN 
Sbjct: 538 EIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNE 597

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
           L    L L+R+M S G+ PD +    +L +C+ L A  +G EV      N    + F+  
Sbjct: 598 LPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVAC 657

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           +L++MYA+ G L  ++ IF+ +  K V SW  +I G+G+HG G  AV+LF++M +S  +P
Sbjct: 658 SLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQP 717

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           D   F+ VL AC HAGL  +GL Y   M+  Y L+P  EHY C++D+LGRAG+LNEAL  
Sbjct: 718 DRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNF 777

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNL 367
           I  M  EPD  +W +LL +   + ++E+ E    K++ LE      Y+LLSN+Y+ A   
Sbjct: 778 INEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKW 837

Query: 368 DGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH 427
           D +  VR  M++  L+KD G S++EL+G+V+ F+ G+ ++  + EI +M ++LE  + E 
Sbjct: 838 DVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEI 897

Query: 428 DGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFI 483
             T        +    E     + HSEK+AI FG +NT  GT + + KNLRIC DCH   
Sbjct: 898 GYTPDCSCVLHELEEVEKRKILKGHSEKVAICFGFLNTKEGTTLRISKNLRICRDCHNAA 957

Query: 484 KLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K +SK   R+ ++RD  RFHHFK G CSC DYW
Sbjct: 958 KYISKAAKREIVIRDNKRFHHFKKGICSCGDYW 990



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/351 (29%), Positives = 156/351 (44%), Gaps = 35/351 (9%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKM--REQGVEINSVTMLCLLPICVDPGYLWLGMCC 69
            V +N++I  Y     V E   L  KM   E+ +E+N VT+L LLP C++   L      
Sbjct: 379 VVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRAL 438

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H   ++        + N  +  Y KCGS+ +   +F  +  K + +WNA+I G+AQNG  
Sbjct: 439 HGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDP 498

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              L+ Y EM  LG+ PD  + V +L +C  LG    G E+   +  NG   N F+  +L
Sbjct: 499 IKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSL 558

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           +++Y  C      R  F+ M  K  V W A++ GY  +     A+ LF +ML  G+ PD 
Sbjct: 559 LSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDE 618

Query: 250 TAFVSVLSACSHAGLTDKGLE-YFYGMKNK---------------------------YGL 281
            A  S+L ACS       G E + + +KN                            +  
Sbjct: 619 IAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNR 678

Query: 282 QPGPE--HYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWGALLGAC 327
             G E   +  M+   G  GQ N+A+EL E M     +PD   +  +L AC
Sbjct: 679 LNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQAC 729



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 170/369 (46%), Gaps = 42/369 (11%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEI--NSVTMLCLLPICVDPGYLWLGMCCH 70
           + +N+LI G+  N    EA   F  + E G  +  +  TM+ LLP+C   G + +GM  H
Sbjct: 277 ISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIH 336

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
            + VK GL  +  V N L+ MY KCG +     LF ++  K +++WN+MI  Y++ G   
Sbjct: 337 GMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVF 396

Query: 131 HVLELYRE--MKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
              +L R+  M+   +  + VT + +L +C           +      + F     +NNA
Sbjct: 397 ETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNA 456

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
            I  YA+CG+L  A  +F GM  K+V SW A+IGG+  +G    A+  + EM + GI PD
Sbjct: 457 FIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPD 516

Query: 249 GTAFVSVLSACSHAGLTDKGLE-----------------------YFYGMKNKYGL---- 281
             + VS+L AC   GL   G E                       YF+  K  YG     
Sbjct: 517 DFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFE 576

Query: 282 QPGPEHYTCMVDLLGRAGQ---LNEALELIESML---VEPDGAVWGALLGACKIHKNVEL 335
             G ++  C   +L    Q    NEAL L   ML   +EPD     ++LGAC      +L
Sbjct: 577 TMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACS-----QL 631

Query: 336 AELAFGKVI 344
           + L  GK +
Sbjct: 632 SALGLGKEV 640



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 82/220 (37%), Positives = 124/220 (56%), Gaps = 9/220 (4%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +NAL+SGYV N L  EA+  F ++      + ++ T  CL+  C     + LG   H + 
Sbjct: 177 WNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMA 236

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           VK GL +D  VGN ++ +Y KCG +D   +LFD++PE+ LI+WN++I G+++NG     L
Sbjct: 237 VKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFW---L 293

Query: 134 ELYREMKSL-----GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
           E YR  +SL     G+ PD  T V +L  C+  G   VG+ +       G      + NA
Sbjct: 294 EAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNA 353

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
           LI+MY++CG L +A  +F  +  K+VVSW ++IG Y   G
Sbjct: 354 LIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREG 393



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 133/264 (50%), Gaps = 17/264 (6%)

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           +CV      DF +   L+TMY  CG     R +FD++  K L  WNA++SGY +N L   
Sbjct: 133 LCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDE 192

Query: 132 VLELYREMKSLG-VCPDAVTFVGVLSSCA-----HLGAHSVGLEVEQQIQANGFGSNPFL 185
            +  + E+ S+    PD  TF  ++ +C      HLG    G+ V+      G   + F+
Sbjct: 193 AIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKM-----GLIMDLFV 247

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS-- 243
            NA+I +Y +CG L +A  +FD MP + ++SW ++I G+  +G    A + F  +L+S  
Sbjct: 248 GNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGD 307

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
           G+ PD    V++L  CS  G  D G+   +GM  K GL         ++D+  + G L+E
Sbjct: 308 GLIPDVATMVTLLPVCSGEGNVDVGM-VIHGMAVKLGLVHELMVCNALIDMYSKCGCLSE 366

Query: 304 ALELIESMLVEPDGAV-WGALLGA 326
           A  L     +E    V W +++GA
Sbjct: 367 AAILFRK--IENKSVVSWNSMIGA 388


>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Brachypodium distachyon]
          Length = 635

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 197/489 (40%), Positives = 283/489 (57%), Gaps = 36/489 (7%)

Query: 64  WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE-KGLITWNAMISG 122
           +LG   H + VK G   D  V N L   Y  CG V   R +FD++P  + ++TWNA+++G
Sbjct: 147 FLGSHVHALAVKAGAAGDLYVRNALTHFYGVCGDVGAMRTVFDELPRVRDVVTWNAVLAG 206

Query: 123 YAQNGLATHVLELYREMK----------------------SLGVCPDAV---------TF 151
           Y + G+     E++ EM                       +LGV  D V           
Sbjct: 207 YVRAGMVRAAREVFEEMPVRDEVSWSTLVGGYVKEGELDVALGVFRDMVEKGVRVNEAAV 266

Query: 152 VGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR 211
           V  LS+ A +G    G  V + +Q  G   +  +  AL++M+++CG +  AR +FDGMPR
Sbjct: 267 VTALSAAAQMGLLEHGRFVHEVVQRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPR 326

Query: 212 KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEY 271
           + V +W A+I G   HG G+ AV+LF   L  G+ P    FV VL+ACS  GL  +G  Y
Sbjct: 327 RDVFAWNAMICGLASHGLGQDAVELFWRFLDEGLWPTDITFVGVLNACSRCGLVAEGRRY 386

Query: 272 FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHK 331
           F  M +KY ++P  EHY CMVDLLGRAG ++EA+ELIE M + PD  +WG +L ACK H 
Sbjct: 387 FKLMVDKYRIEPEMEHYGCMVDLLGRAGLVSEAIELIEGMHIAPDPVLWGTVLSACKTHN 446

Query: 332 NVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYV 391
            V+L      K+I+LEP + G+YVLL++IY++A+  D +  VR +M  R   K  G+S +
Sbjct: 447 LVDLGITVGNKLIELEPAHDGHYVLLASIYAKAKKWDEVREVRKLMSSRGTGKSAGWSLM 506

Query: 392 ELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----HDGTKRSDQKNSEEHLNDTEV 447
           E +G +H F+VGD +H  +V+IY MLD +   + +     D +        EE ++  +V
Sbjct: 507 EAQGNLHKFLVGDMDHKDSVQIYNMLDMINRRLADAGYVPDVSSVLHDIGDEEKVHAIKV 566

Query: 448 HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKS 507
           HSE+LAIA+G I T  G+ I ++KNL++CGDCH F K+V+K+ +R+ IVRD +RFHH K 
Sbjct: 567 HSERLAIAYGFIVTEVGSPIRIVKNLQVCGDCHEFSKMVTKVFNREIIVRDGSRFHHMKE 626

Query: 508 GFCSCKDYW 516
           G CSC DYW
Sbjct: 627 GKCSCLDYW 635



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 144/325 (44%), Gaps = 45/325 (13%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++ L+ GYV    +  A+ +F  M E+GV +N   ++  L      G L  G   H +
Sbjct: 229 VSWSTLVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVVTALSAAAQMGLLEHGRFVHEV 288

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             + G+ +  +VG  L+ M+ KCG V   R++FD +P + +  WNAMI G A +GL    
Sbjct: 289 VQRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRRDVFAWNAMICGLASHGLGQDA 348

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           +EL+      G+ P  +TFVGVL++C+  G  + G     ++  + +   P + +   ++
Sbjct: 349 VELFWRFLDEGLWPTDITFVGVLNACSRCGLVAEGRRY-FKLMVDKYRIEPEMEHYGCMV 407

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           ++  R G + +A  + +GM                                   I PD  
Sbjct: 408 DLLGRAGLVSEAIELIEGM----------------------------------HIAPDPV 433

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKY-GLQPGPE-HYTCMVDLLGRAGQLNEALELI 308
            + +VLSAC    L D G+     + NK   L+P  + HY  +  +  +A + +E  E+ 
Sbjct: 434 LWGTVLSACKTHNLVDLGIT----VGNKLIELEPAHDGHYVLLASIYAKAKKWDEVREVR 489

Query: 309 ESMLVEPDG--AVWGALLGACKIHK 331
           + M     G  A W  +     +HK
Sbjct: 490 KLMSSRGTGKSAGWSLMEAQGNLHK 514



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 87/208 (41%), Gaps = 34/208 (16%)

Query: 155 LSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR--- 211
           L +  H  +  +G  V       G   + ++ NAL + Y  CG++   R +FD +PR   
Sbjct: 137 LDATDHRASSFLGSHVHALAVKAGAAGDLYVRNALTHFYGVCGDVGAMRTVFDELPRVRD 196

Query: 212 -----------------------------KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
                                        +  VSW+ ++GGY   G  +VA+ +F +M++
Sbjct: 197 VVTWNAVLAGYVRAGMVRAAREVFEEMPVRDEVSWSTLVGGYVKEGELDVALGVFRDMVE 256

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
            G+R +  A V+ LSA +  GL + G  + + +  + G+         +VD+  + G + 
Sbjct: 257 KGVRVNEAAVVTALSAAAQMGLLEHG-RFVHEVVQRTGMPVSVNVGAALVDMFSKCGCVA 315

Query: 303 EALELIESMLVEPDGAVWGALLGACKIH 330
            A E+ + M    D   W A++     H
Sbjct: 316 VAREVFDGM-PRRDVFAWNAMICGLASH 342


>gi|224118652|ref|XP_002331415.1| predicted protein [Populus trichocarpa]
 gi|222873629|gb|EEF10760.1| predicted protein [Populus trichocarpa]
          Length = 458

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 183/452 (40%), Positives = 275/452 (60%), Gaps = 5/452 (1%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H +  K G +    + N L+ MY KCG +   RK+FD    K +  W ++I GY   G  
Sbjct: 7   HSLIFKCGCENKDPLDNLLLGMYAKCGDLISARKVFDMALVKTVFLWTSIIGGYTHMGYP 66

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              L L++++    + P+  T   +LS+CA LG+  +G E+E+ I +NGF S+  +  +L
Sbjct: 67  AEALLLFKKLLKTAIKPNGATLATILSACADLGSLDMGKEIEEYILSNGFQSDRQVQTSL 126

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK-SGIRPD 248
           I+M+++CG++ KA ++F+ +  K + +W+++I GY IHG  E A+ LF +ML+   I+PD
Sbjct: 127 IHMFSKCGSIGKAISVFERISDKDLAAWSSMINGYAIHGMAEEALGLFHKMLEIKEIKPD 186

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
              F S+L ACSH GL + GL++F  M+  +G+ P  EHY C+VDLLGRAGQ   AL+ I
Sbjct: 187 AVVFTSILLACSHVGLVEDGLKFFKSMQKDFGIVPSVEHYMCLVDLLGRAGQFELALKTI 246

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
             M V+    VW   L AC  H N+EL ELA  K++ + P +   YVL++N+Y+      
Sbjct: 247 RVMPVKLQAQVWAPFLSACTKHCNLELGELAARKLLYMNPGSHANYVLMANLYTSMGKWK 306

Query: 369 GIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHD 428
                R +M +R L K PG+S VE+ G VH+F+ GDR+H Q+++IY+ L+++   + E  
Sbjct: 307 EAAVTRSLMIDRGLVKAPGWSQVEINGSVHVFIAGDRSHTQSIDIYKKLEEINLKLAEAG 366

Query: 429 GTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
               +D        EE     +VHSE+LAIAFG+I+T  G+ + +MKN R C DCH  +K
Sbjct: 367 YVPETDTVIHDLEREEKEEALKVHSERLAIAFGLISTEAGSTLRIMKNHRTCVDCHSALK 426

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +SKI  R  IVRD +RFHHF+SG C+CKD+W
Sbjct: 427 FISKITGRHLIVRDGSRFHHFESGKCTCKDFW 458



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 111/215 (51%), Gaps = 6/215 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD ++  T     + ++I GY      +EA+ LF K+ +  ++ N  T+  +L  C D 
Sbjct: 41  VFDMALVKT--VFLWTSIIGGYTHMGYPAEALLLFKKLLKTAIKPNGATLATILSACADL 98

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L +G       +  G   D  V   L+ M+ KCGS+     +F+++ +K L  W++MI
Sbjct: 99  GSLDMGKEIEEYILSNGFQSDRQVQTSLIHMFSKCGSIGKAISVFERISDKDLAAWSSMI 158

Query: 121 SGYAQNGLATHVLELYREMKSLG-VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           +GYA +G+A   L L+ +M  +  + PDAV F  +L +C+H+G    GL+  + +Q + F
Sbjct: 159 NGYAIHGMAEEALGLFHKMLEIKEIKPDAVVFTSILLACSHVGLVEDGLKFFKSMQKD-F 217

Query: 180 GSNPFLNN--ALINMYARCGNLKKARAIFDGMPRK 212
           G  P + +   L+++  R G  + A      MP K
Sbjct: 218 GIVPSVEHYMCLVDLLGRAGQFELALKTIRVMPVK 252


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  368 bits (944), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 189/513 (36%), Positives = 298/513 (58%), Gaps = 12/513 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+IS Y      SEA+S+F +M     + N  T   +L  C+    L LG   H +
Sbjct: 118 VSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGL 177

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK+  D    VG+ L+ MY K G ++  R++F+ +PE+ +++  A+I+GYAQ GL    
Sbjct: 178 IVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEA 237

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           LE+++ ++S G+ P+ VT+  +L++ + L     G +    +          L N+LI+M
Sbjct: 238 LEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDM 297

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML-KSGIRPDGTA 251
           Y++CGNL  A+ +FD MP +T +SW A++ GY  HG G   ++LF  M  +  ++PD   
Sbjct: 298 YSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVT 357

Query: 252 FVSVLSACSHAGLTDKGLEYFYGM-KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            ++VLS CSH  + D GL  + GM   +YG++P  EHY C+VD+LGRAG+++EA E I+ 
Sbjct: 358 LLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKR 417

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M  +P   V G+LLGAC++H +V++ E    ++I++EP N G YV+LSN+Y+ A   + +
Sbjct: 418 MPSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGRWEDV 477

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
             VR MM ++ + K+PG S+++ +  +H F   DR H +  E+   + ++   +++    
Sbjct: 478 NNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYV 537

Query: 431 K-------RSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFI 483
                     D++  E+ L     HSEKLA+ FG+I T  G  I V KNLRIC DCH F 
Sbjct: 538 PDISCVLYDVDEEQKEKMLLG---HSEKLALTFGLITTGEGIPIRVFKNLRICVDCHNFA 594

Query: 484 KLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K+ SK+ +R+  +RD  RFH    G CSC DYW
Sbjct: 595 KIFSKVFEREVSLRDKNRFHQIVKGICSCGDYW 627



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 146/294 (49%), Gaps = 24/294 (8%)

Query: 42  GVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYG 101
           G EI       LL  C+D   L  G   H   +K        +   L+  Y KC  ++  
Sbjct: 46  GPEIGFHCYDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDA 105

Query: 102 RKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL 161
           RK+ D++PEK +++W AMIS Y+Q G ++  L ++ EM      P+  TF  VL+SC   
Sbjct: 106 RKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRA 165

Query: 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
              ++G ++   I    + S+ F+ ++L++MYA+ G +++AR IF+ +P + VVS TAII
Sbjct: 166 SGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAII 225

Query: 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG-----------LE 270
            GY   G  E A+++F  +   G+RP+   + S+L+A S   L D G           L 
Sbjct: 226 AGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELP 285

Query: 271 YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
           ++  ++N             ++D+  + G L+ A  L ++M  E     W A+L
Sbjct: 286 FYAVLQNS------------LIDMYSKCGNLSYAQRLFDNM-PERTAISWNAML 326


>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 866

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 202/506 (39%), Positives = 298/506 (58%), Gaps = 7/506 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  +ISGY  N L  +A+  +  M +  V+ + +T+  +L  C   G L  G+  H +
Sbjct: 364 VSWTTMISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKL 423

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K  L     V N L+ MY KC  +D    +F  +P K +I+W ++I+G   N      
Sbjct: 424 AIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEA 483

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L  +R+MK + + P+A+T    L++CA +GA   G E+   +   G G + FL NAL++M
Sbjct: 484 LIFFRQMK-MTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDM 542

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y RCG +  A   F+   +K V SW  ++ GY   G G V V+LFD M+K+ +RPD   F
Sbjct: 543 YVRCGRMNIAWNQFNSQ-KKDVSSWNILLTGYSERGQGSVVVELFDRMVKARVRPDEITF 601

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +S+L  C  + +  +GL YF  M+ +YG+ P  +HY C+VDLLGRAG+L EA + I+ M 
Sbjct: 602 ISLLCGCGKSQMVRQGLMYFSKME-EYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMP 660

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           V PD AVWGALL AC+IH N++L EL+  ++ +L+  + GYY+LL N+Y++      + +
Sbjct: 661 VTPDPAVWGALLNACRIHHNIDLGELSAQRIFELDKGSVGYYILLCNLYADCGKWREVAK 720

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR MM+E  L  D G S+VE+KG+VH F+  D+ H QT EI  +LD     + E   T  
Sbjct: 721 VRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLDGFYEKMSEVGLTTS 780

Query: 433 SDQKNSEE-HLNDTEV---HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
           S+  + +E  ++  E+   HSE+ AIAFG+IN+ PG  I V KNL +C  CH  +K +SK
Sbjct: 781 SESSSMDETEISRDEIFCGHSERKAIAFGLINSVPGMPIWVTKNLNMCESCHDTVKFISK 840

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKD 514
            V R+  VRD+  FHHFK G CSC D
Sbjct: 841 TVRREISVRDSEHFHHFKDGECSCGD 866



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 94/257 (36%), Positives = 141/257 (54%), Gaps = 1/257 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +N L+ GY       EA+ L+ +M    GV+ +  T  C+L  C     L  G   H   
Sbjct: 163 WNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHV 222

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           V++G +LD  V N L+TMYVKCG V   R LFD++P + +I+WNAMISGY +NG+    L
Sbjct: 223 VRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGL 282

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
           +L+  M+ L V PD +T   V+S+C  LG   +G ++   +   GF  +  + N+L  MY
Sbjct: 283 KLFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMY 342

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
              G+ ++A  +F  M  K +VSWT +I GY  +   E A+  +  M +  ++PD     
Sbjct: 343 LYAGSWREAEKLFSRMDCKDIVSWTTMISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVA 402

Query: 254 SVLSACSHAGLTDKGLE 270
           +VLSAC+  G  D G+E
Sbjct: 403 AVLSACATLGDLDTGVE 419



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/313 (32%), Positives = 157/313 (50%), Gaps = 6/313 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +NA+ISGY  N +  E + LF  MR   V+ + +T+  ++  C   G   LG   H  
Sbjct: 263 ISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAY 322

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +  G  +D SV N L  MY+  GS     KLF ++  K +++W  MISGY  N L    
Sbjct: 323 VITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMISGYEYNFLPEKA 382

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           ++ YR M    V PD +T   VLS+CA LG    G+E+ +        S   + N LINM
Sbjct: 383 IDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINM 442

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++C  + KA  IF  +PRK V+SWT+II G  ++     A+  F +M K  ++P+    
Sbjct: 443 YSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFFRQM-KMTLQPNAITL 501

Query: 253 VSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            + L+AC+  G    G E + + ++   GL     +   ++D+  R G++N A     S 
Sbjct: 502 TAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPN--ALLDMYVRCGRMNIAWNQFNSQ 559

Query: 312 LVEPDGAVWGALL 324
             + D + W  LL
Sbjct: 560 --KKDVSSWNILL 570



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 125/246 (50%), Gaps = 1/246 (0%)

Query: 19  ISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGL 78
           + G   N  + EA+ L   M+E  V ++    + L+ +C        G   + + +    
Sbjct: 66  LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAHEEGSKVYSVALSSMN 125

Query: 79  DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYRE 138
            L   +GN  + M+V+ G++     +F ++ E+ L +WN ++ GYA+ G     + LY  
Sbjct: 126 SLSVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHR 185

Query: 139 MKSL-GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG 197
           M  + GV PD  TF  VL +C  +   + G EV   +   G+  +  + NALI MY +CG
Sbjct: 186 MLWVGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCG 245

Query: 198 NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257
           ++K AR +FD MPR+ ++SW A+I GY  +G G   ++LF  M    + PD     SV+S
Sbjct: 246 DVKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVIS 305

Query: 258 ACSHAG 263
           AC   G
Sbjct: 306 ACELLG 311



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 90/206 (43%), Gaps = 3/206 (1%)

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           + G   NG     ++L   M+ L V  D   FV ++  C    AH  G +V     ++  
Sbjct: 66  LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAHEEGSKVYSVALSSMN 125

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             +  L NA + M+ R GNL  A  +F  M  + + SW  ++GGY   G+ + A+ L+  
Sbjct: 126 SLSVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHR 185

Query: 240 MLK-SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
           ML   G++PD   F  VL  C       +G E    +  +YG +   +    ++ +  + 
Sbjct: 186 MLWVGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHVV-RYGYELDIDVVNALITMYVKC 244

Query: 299 GQLNEALELIESMLVEPDGAVWGALL 324
           G +  A  L + M    D   W A++
Sbjct: 245 GDVKSARLLFDRM-PRRDIISWNAMI 269


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 206/552 (37%), Positives = 295/552 (53%), Gaps = 39/552 (7%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD   +    T  +N +I GY  +    EA+ L+  M    V  N+ T   LL  C   
Sbjct: 74  VFDRIFRPN--TFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSM 131

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV------------ 108
             L      H   +K G   +    N L+ +Y K G +   R LFDQV            
Sbjct: 132 SALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMI 191

Query: 109 -------------------PEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
                              PE+ +I+W +MISG    G     L L+  M++ G+  D V
Sbjct: 192 DGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNV 251

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
             V  L +CA LG    G  +   I+ +    +P L   LI+MYA+CG+L++A  +F  M
Sbjct: 252 ALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKM 311

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
             K V  WTA+I GY IHG G  A++ F +M  +G+ P+   F  +L+ACSHAGL  +  
Sbjct: 312 EEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAK 371

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
             F  M+  +G +P  EHY CMVDLLGRAG L EA ELIE+M V+P+ A+WGALL AC I
Sbjct: 372 LLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHI 431

Query: 330 HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYS 389
           H N+EL +     +I+++P + G Y+ L++I++ A   +   RVR  M+E+ + K PG S
Sbjct: 432 HGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCS 491

Query: 390 YVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEV-- 447
            + + G  H F+ GD +H Q  EI  ML+++   ++E +G K        +  +  +   
Sbjct: 492 VISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLRE-EGYKPKLGDLLLDLEDKEKETA 550

Query: 448 ---HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHH 504
              HSEKLA+ FG+I+T PG  I ++KNLR+C DCH  IKL+SK+  R+ ++RD TRFH 
Sbjct: 551 IHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHL 610

Query: 505 FKSGFCSCKDYW 516
           FK G C+C DYW
Sbjct: 611 FKDGNCTCGDYW 622



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 149/324 (45%), Gaps = 46/324 (14%)

Query: 44  EINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVK--CGSVDYG 101
           E N+   L LL  C +   L      H   +K GL LD    + L+        GS+ Y 
Sbjct: 15  ESNAAQTLHLLQRCSNMEEL---RQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYA 71

Query: 102 RKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL 161
           R +FD++       WN MI GY+ +      L LY  M    V  +A TF  +L +C+ +
Sbjct: 72  RTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSM 131

Query: 162 GAHSVGLEVEQQIQAN----GFGSNPFLNNALINMYARCGNLKKARAIFDG--------- 208
            A    LE  QQI A+    GFGS  +  N+L+N+Y++ G++K AR +FD          
Sbjct: 132 SA----LEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSW 187

Query: 209 ----------------------MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
                                 MP + ++SWT++I G    G  + A+ LF  M  +GI+
Sbjct: 188 NSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIK 247

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
            D  A VS L AC+  G+ D+G ++ +    K+ ++  P     ++D+  + G L EA+E
Sbjct: 248 LDNVALVSTLQACADLGVLDQG-KWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIE 306

Query: 307 LIESMLVEPDGAVWGALLGACKIH 330
           +   M  E   +VW A++    IH
Sbjct: 307 VFRKM-EEKGVSVWTAMISGYAIH 329


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 187/505 (37%), Positives = 292/505 (57%), Gaps = 3/505 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +  +I G+V +   SEA  LF  M E+  +  S T   ++      G + +G   H   +
Sbjct: 186 WMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRSRTFTTMIRASAGLGLVQVGRQIHSCAL 245

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K G+  D  V   L+ MY KCGS++    +FDQ+PEK  + WN++I+ YA +G +   L 
Sbjct: 246 KRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALS 305

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
            Y EM+  G   D  T   V+  CA L +     +    +   G+ ++   N AL++ Y+
Sbjct: 306 FYYEMRDSGAKIDHFTISIVIRICARLASLEYAKQAHAALVRRGYDTDIVANTALVDFYS 365

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           + G ++ A  +F+ M RK V+SW A+I GYG HG GE AV++F++ML+ G+ P+   F++
Sbjct: 366 KWGRMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMIPNHVTFLA 425

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VLSACS++GL+++G E FY M   + ++P   HY CMV+LLGR G L+EA ELI S   +
Sbjct: 426 VLSACSYSGLSERGWEIFYSMSRDHKVKPRAMHYACMVELLGREGLLDEAYELIRSAPFK 485

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
           P   +W  LL AC++H+N+EL +LA   +  +EP     Y++L N+Y+ +  L     V 
Sbjct: 486 PTTNMWATLLTACRMHENLELGKLAAENLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGVL 545

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH---DGTK 431
             ++ + L+  P  +++E+K + + F+ GD++H QT EIY  ++ +   +  H   +  K
Sbjct: 546 QTLKRKGLRMLPACTWIEVKKQSYAFLCGDKSHSQTKEIYEKVNNMMVEISRHGYVEENK 605

Query: 432 RSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVD 491
                  EE     + HSEKLAIAFG+INT   T + + +  R+CGDCH  IK ++ +  
Sbjct: 606 ALLPDVDEEEQRILKYHSEKLAIAFGLINTPHWTPLQITQGHRVCGDCHSAIKFIAMVTG 665

Query: 492 RQFIVRDATRFHHFKSGFCSCKDYW 516
           R+ +VRDA+RFHHF+ G CSC DYW
Sbjct: 666 REIVVRDASRFHHFRDGSCSCGDYW 690



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 158/347 (45%), Gaps = 41/347 (11%)

Query: 19  ISGYVLNSLVSEAVSLFG--KMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKF 76
           I   VL +   EA+ LF   ++   G ++   T   L+  CV    +          V  
Sbjct: 87  IEKLVLCNRYREAMELFEILELEHDGFDVGGSTYDALVSACVGLRSIRGVKRVFNYMVNS 146

Query: 77  GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY 136
           G + D  V N ++ ++VKCG +   RKLFD++PEK + +W  MI G+  +G  +    L+
Sbjct: 147 GFEPDLYVMNRVLFVHVKCGLMLDARKLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLF 206

Query: 137 REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196
             M        + TF  ++ + A LG   VG ++       G G + F++ ALI+MY++C
Sbjct: 207 LCMWEEFNDGRSRTFTTMIRASAGLGLVQVGRQIHSCALKRGVGDDTFVSCALIDMYSKC 266

Query: 197 GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL 256
           G+++ A  +FD MP KT V W +II  Y +HG+ E A+  + EM  SG + D      V+
Sbjct: 267 GSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSFYYEMRDSGAKIDHFTISIVI 326

Query: 257 SAC-----------SHAGLTDKGLEY----------FYGMKNKYGLQPGPEH-------- 287
             C           +HA L  +G +           FY   +K+G      H        
Sbjct: 327 RICARLASLEYAKQAHAALVRRGYDTDIVANTALVDFY---SKWGRMEDAWHVFNRMRRK 383

Query: 288 ----YTCMVDLLGRAGQLNEALELIESMLVE---PDGAVWGALLGAC 327
               +  ++   G  GQ  EA+E+ E ML E   P+   + A+L AC
Sbjct: 384 NVISWNALIAGYGNHGQGEEAVEMFEQMLREGMIPNHVTFLAVLSAC 430



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 145/314 (46%), Gaps = 43/314 (13%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+  + T  TV +N++I+ Y L+    EA+S + +MR+ G +I+  T+  ++ IC   
Sbjct: 275 VFDQMPEKT--TVGWNSIIASYALHGYSEEALSFYYEMRDSGAKIDHFTISIVIRICARL 332

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L      H   V+ G D D      L+  Y K G ++    +F+++  K +I+WNA+I
Sbjct: 333 ASLEYAKQAHAALVRRGYDTDIVANTALVDFYSKWGRMEDAWHVFNRMRRKNVISWNALI 392

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +GY  +G     +E++ +M   G+ P+ VTF+ VLS+C++ G    G E+   +  +   
Sbjct: 393 AGYGNHGQGEEAVEMFEQMLREGMIPNHVTFLAVLSACSYSGLSERGWEIFYSMSRDHKV 452

Query: 181 SNPFLNNA-LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
               ++ A ++ +  R G L +A  +    P                             
Sbjct: 453 KPRAMHYACMVELLGREGLLDEAYELIRSAP----------------------------- 483

Query: 240 MLKSGIRPDGTAFVSVLSACS-HAGLTDKGLEYFYGMKNKYGLQPGPE-HYTCMVDLLGR 297
                 +P    + ++L+AC  H  L    L      +N YG++P    +Y  +++L   
Sbjct: 484 -----FKPTTNMWATLLTACRMHENLELGKL----AAENLYGMEPEKLCNYIVLLNLYNS 534

Query: 298 AGQLNEALELIESM 311
           +G+L EA  +++++
Sbjct: 535 SGKLKEAAGVLQTL 548


>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  367 bits (943), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 179/507 (35%), Positives = 298/507 (58%), Gaps = 4/507 (0%)

Query: 14  CYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           CYN +++G + ++ ++EAV +   +  +G+E N+ T + +  +C     + LG   H   
Sbjct: 191 CYNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQM 250

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           +K  +D D  +G+ ++ MY KCG+V  GR  FD++  + +++W ++I+ Y QN      L
Sbjct: 251 LKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQNEFFEEAL 310

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
            L+ +M+   + P+  T   + +S A L A  +G ++  + + +G   N  + NALI MY
Sbjct: 311 NLFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLGDQLHARAEKSGLKGNVMVGNALIIMY 370

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
            + G++  A+++F  M    +++W AII G+  HG G+ A+ +F +M+ +G RP+   F+
Sbjct: 371 FKSGDILAAQSVFSNMTCCNIITWNAIITGHSHHGLGKEALSMFQDMMATGERPNYVTFI 430

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
            V+ AC+H  L D+G  YF  +  ++ + PG EHYTC+V LL R+G+L+EA   + S  +
Sbjct: 431 GVILACAHLKLVDEGFYYFNHLMKQFRIVPGLEHYTCIVGLLSRSGRLDEAENFMRSHQI 490

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
             D   W  LL AC +HK+ +        +++LEP + G Y+LLSN+++  R  D ++ +
Sbjct: 491 NWDVVSWRTLLNACYVHKHYDKGRKIAEYLLQLEPRDVGTYILLSNMHARVRRWDHVVEI 550

Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYR----MLDKLENLVQEHDG 429
           R +MRER +KK+PG S++E++   H+F   D  H +   IY     +L K+  L    D 
Sbjct: 551 RKLMRERNVKKEPGVSWLEIRNVAHVFTSEDIKHPEANLIYENVKDLLSKIRPLGYVPDI 610

Query: 430 TKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKI 489
                    E+ +++   HSEKLA+A+G++ T  G  I V+KNLR+C DCH  IKL+SK+
Sbjct: 611 DNVLHDIEDEQKVDNLSYHSEKLAVAYGLMKTPSGAPITVIKNLRMCDDCHTAIKLISKV 670

Query: 490 VDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +R  +VRDA RFHHF++G CSC DYW
Sbjct: 671 ANRVIVVRDANRFHHFQNGCCSCGDYW 697



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 143/302 (47%), Gaps = 5/302 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
            V ++AL++GY+ N    E   LF KM  +  +  N   +   +  C    Y+  G  CH
Sbjct: 88  VVSWSALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAISSCDSQMYV-EGKQCH 146

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
              +K GL+    V N L+ +Y KC  V    ++   VP   +  +N +++G  Q+    
Sbjct: 147 GYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVPGNDIFCYNLVVNGLLQHTHMA 206

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             +++ + + S G+  +  T+V +   CA L   ++G +V  Q+  +    + ++ +++I
Sbjct: 207 EAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQMLKSDIDCDVYIGSSII 266

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MY +CGN+   R  FD +  + VVSWT+II  Y  +   E A+ LF +M    I P+  
Sbjct: 267 DMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQNEFFEEALNLFSKMEIDCIPPNEY 326

Query: 251 AFVSVLSACSHAGLTDKGL-EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
               + +  S AGL+   L +  +    K GL+        ++ +  ++G +  A  +  
Sbjct: 327 TMAVLFN--SAAGLSALCLGDQLHARAEKSGLKGNVMVGNALIIMYFKSGDILAAQSVFS 384

Query: 310 SM 311
           +M
Sbjct: 385 NM 386



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 114/242 (47%), Gaps = 4/242 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V + ++I+ Y  N    EA++LF KM    +  N  TM  L         L LG   H 
Sbjct: 290 VVSWTSIIAAYFQNEFFEEALNLFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLGDQLHA 349

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              K GL  +  VGN L+ MY K G +   + +F  +    +ITWNA+I+G++ +GL   
Sbjct: 350 RAEKSGLKGNVMVGNALIIMYFKSGDILAAQSVFSNMTCCNIITWNAIITGHSHHGLGKE 409

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--AL 189
            L ++++M + G  P+ VTF+GV+ +CAHL     G      +    F   P L +   +
Sbjct: 410 ALSMFQDMMATGERPNYVTFIGVILACAHLKLVDEGFYYFNHLMKQ-FRIVPGLEHYTCI 468

Query: 190 INMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           + + +R G L +A            VVSW  ++    +H H +   ++ + +L+   R  
Sbjct: 469 VGLLSRSGRLDEAENFMRSHQINWDVVSWRTLLNACYVHKHYDKGRKIAEYLLQLEPRDV 528

Query: 249 GT 250
           GT
Sbjct: 529 GT 530



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 4/185 (2%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM-KSLGV 144
           N L+ +YVKC  V   RKLFD +P + +++W+A+++GY QNG    V EL+++M     +
Sbjct: 61  NSLINLYVKCDEVSIARKLFDSMPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNI 120

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARA 204
            P+       +SSC     +  G +       +G   + ++ NALI +Y++C ++  A  
Sbjct: 121 FPNEYVIATAISSCDS-QMYVEGKQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQ 179

Query: 205 IFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL 264
           I   +P   +  +  ++ G   H H   AV +   ++  GI  +   +V++   C  A L
Sbjct: 180 ILYTVPGNDIFCYNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFRLC--ASL 237

Query: 265 TDKGL 269
            D  L
Sbjct: 238 KDITL 242


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  367 bits (943), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 192/517 (37%), Positives = 301/517 (58%), Gaps = 19/517 (3%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V +  +I G++  S       LF +MR  G E++   +  L+  C +      G   H 
Sbjct: 179 SVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHG 238

Query: 72  ICVKFG-LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
           +C+K   +D +F +   L+ MY+KCG +D+  KLF+++  + ++ W+A+I+G+A+NG A 
Sbjct: 239 LCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRAL 298

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             + ++R+M +  V P++VTF  ++ +C+ LG+   G  V   +  NG   +     + I
Sbjct: 299 ESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFI 358

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MYA+CG +  A  +F  +P K V SW+ +I G+G+HG    A+ LF EM      P+  
Sbjct: 359 DMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSV 418

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            FVSVLSACSH+G  ++G  +F  M   YG+ P  EHY CMVDLLGRAG+++EAL  I +
Sbjct: 419 TFVSVLSACSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINN 478

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M  EP  + WGALLGAC+IH+  ELAE    K++ LE   +G YV+LSNIY++    + +
Sbjct: 479 MPTEPGASAWGALLGACRIHRRAELAEEVAKKLLPLESDQSGVYVMLSNIYADVGMWEMV 538

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE---- 426
            + R+ M E+ + K  G++ +E++ +++LF   DR  ++  +I  + + L+  ++E    
Sbjct: 539 KKTRLKMCEKGIHKIVGFTSIEIEEKLYLFSSEDRFAYKNTQIESLWNSLKERMRELGYV 598

Query: 427 -------HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDC 479
                  HD     D +  +E L     HSEKLAI FG++N+  G  I + KN+R+CGDC
Sbjct: 599 PDLRFVLHD----VDDEVKQEVLCG---HSEKLAIVFGLLNSGEGMPIRITKNMRVCGDC 651

Query: 480 HLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           H   K +S I  R+ I+RD  RFHH + G CSC DYW
Sbjct: 652 HTASKFISLITRRKIIMRDVKRFHHVQDGVCSCGDYW 688



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 151/317 (47%), Gaps = 3/317 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N +++ +  N    + + LF +M ++G  ++S  ++  +  C            H + +
Sbjct: 81  WNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLFQGAKLFHSLAI 140

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K  L+ D  V   LM +Y + GS++   K+F++VP K  + W  MI G+        V E
Sbjct: 141 KLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFE 200

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQ-IQANGFGSNPFLNNALINMY 193
           L+  M+  G   D     G++ +C ++ A   G       I+ N   SN FL  +L++MY
Sbjct: 201 LFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMY 260

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
            +CG L  A  +F+ +  + VV W+AII G+  +G    ++ +F +ML   + P+   F 
Sbjct: 261 MKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFA 320

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           S++ ACS  G   +G    +G   + G++   ++YT  +D+  + G +  A  +    + 
Sbjct: 321 SIVLACSSLGSLKQG-RSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVF-CQIP 378

Query: 314 EPDGAVWGALLGACKIH 330
           E +   W  ++    +H
Sbjct: 379 EKNVFSWSTMINGFGMH 395



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 121/255 (47%), Gaps = 29/255 (11%)

Query: 85  GNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGV 144
           G  +   Y++ GS+    K F+ +  + L +WN +++ +++N     VL+L++ M   G 
Sbjct: 50  GPMIFGAYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGK 109

Query: 145 CPDAVTFVGVLSSCAHL----GA---HSVGLEVEQQIQANGFGSNPFLNNALINMYARCG 197
             D+   V  + +C  L    GA   HS+ +++  +        +P++  AL+N+Y   G
Sbjct: 110 LVDSFNLVFAVKACFGLSLFQGAKLFHSLAIKLRLE-------GDPYVAPALMNVYTELG 162

Query: 198 NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257
           +L++A  +F+ +P K  V W  +I G+          +LF  M +SG   D      ++ 
Sbjct: 163 SLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQ 222

Query: 258 ACSHAGLTDKGLEYFYGM-------KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
           AC +     +G + F+G+        + + LQ      T +VD+  + G L+ AL+L E 
Sbjct: 223 ACGNVYAGKEG-KTFHGLCIKKNFIDSNFFLQ------TSLVDMYMKCGFLDFALKLFEE 275

Query: 311 MLVEPDGAVWGALLG 325
           +    D  VW A++ 
Sbjct: 276 ISYR-DVVVWSAIIA 289



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 2/156 (1%)

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
           ++  QI  N    +      +   Y + G+L  A   F+ +  + + SW  I+  +  + 
Sbjct: 33  QLNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNK 92

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY 288
                +QLF  MLK G   D    V  + AC    L  +G + F+ +  K  L+  P   
Sbjct: 93  CFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLF-QGAKLFHSLAIKLRLEGDPYVA 151

Query: 289 TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
             ++++    G L EA ++ E + ++ +  +WG ++
Sbjct: 152 PALMNVYTELGSLEEAHKVFEEVPLK-NSVIWGVMI 186


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 198/523 (37%), Positives = 299/523 (57%), Gaps = 13/523 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF+ES + +  T  ++++IS +  N     A+  F +M  + +  +          C   
Sbjct: 111 VFEESERKSSTT--WSSVISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAIL 168

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G   +G   HC+ +K G D+D  VG+ L+ MY KCG +   R +FD++P + +++W+ MI
Sbjct: 169 GRCDVGKSVHCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMI 228

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GY Q G     + L++E    G+  +  T   V+  C       +G ++        + 
Sbjct: 229 YGYTQLGEHEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYD 288

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            + F+ ++LI++Y++CG ++ A  +FD +P K +  W A++     H H + A  LF +M
Sbjct: 289 LSGFVGSSLISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEAFDLFTKM 348

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
             +G+RP+   F+ VL ACSHAGL ++G +YF  MK KY ++PG +HY  MVDLLGRAG+
Sbjct: 349 ENAGMRPNFITFLCVLYACSHAGLVEEGKKYFALMK-KYEIEPGTQHYASMVDLLGRAGK 407

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L EAL +I+ M  EP  +VWGA +  C+IH N +LA  A  KV +L  +++G +V+LSN 
Sbjct: 408 LQEALSVIKGMPTEPTESVWGAFITGCRIHGNTDLAAFAADKVFELGAVSSGLHVMLSNA 467

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+ A   +   + R M+R+R +KK+ G S++E   RVH F  GDR H +  EIY+   KL
Sbjct: 468 YAAAGRYEDAAKARKMLRDRGVKKETGLSWIEEGNRVHKFAAGDRFHVRMKEIYQ---KL 524

Query: 421 ENLVQE-------HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
           E+L +E        D +    +  SEE       HSE+LAIAFG+I+   G  I +MKNL
Sbjct: 525 EDLGEEMERAGYVADTSFVLREVGSEEKNQTIRYHSERLAIAFGLISIPLGRPIRIMKNL 584

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           R+CGDCH  IK +SK+  R  IVRD  RFH F+ G CSC DYW
Sbjct: 585 RVCGDCHNAIKFISKLSGRVIIVRDNNRFHRFEDGKCSCADYW 627



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 139/281 (49%), Gaps = 2/281 (0%)

Query: 63  LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISG 122
           L  G   H   +K GL +   V + L+  Y K        ++F++   K   TW+++IS 
Sbjct: 70  LLKGQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESERKSSTTWSSVISS 129

Query: 123 YAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN 182
           +AQN      ++ +  M    +CPD   F     +CA LG   VG  V   +   G+  +
Sbjct: 130 FAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKSVHCLVIKTGYDVD 189

Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
            F+ ++L++MYA+CG++K+AR +FD MP + VVSW+ +I GY   G  E A++LF E L 
Sbjct: 190 VFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEHEEAMRLFKEALL 249

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
            G+  +     SV+  C  A L + G +  +G+  K          + ++ L  + G + 
Sbjct: 250 EGLDVNDFTLSSVIRVCGSATLLELGKQ-IHGLCFKTSYDLSGFVGSSLISLYSKCGLIE 308

Query: 303 EALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
            A  + + + ++  G +W A+L AC  H + + A   F K+
Sbjct: 309 GAYRVFDEVPIKNLG-MWNAMLIACAQHAHTKEAFDLFTKM 348


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  367 bits (942), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 203/517 (39%), Positives = 304/517 (58%), Gaps = 19/517 (3%)

Query: 10  HLTVCYNALISGYVLN-SLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           H  + + AL+SGYV   S  ++ + LF KM  +G+  N +T   +L  C + G    G  
Sbjct: 322 HNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQ 381

Query: 69  CHCICVKFGL-DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
            H  CVK  L DL+  VGN L++MY + GS++  R  FDQ+ EK +++++  + G   +G
Sbjct: 382 IHTHCVKSNLADLNV-VGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDG---DG 437

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
            +    +   E   LG+     TF  ++S+ A +G  + G  +       GFGS+  + N
Sbjct: 438 RSNTYQDYQIERMELGI--STFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIGN 495

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           +L++MY+RCG L  A  +FD M    V+SWT++I G   HG+   A++LF +M+ +G++P
Sbjct: 496 SLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGYAARALELFHDMIAAGVKP 555

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           +   +++VLSACSHAGL  +G E+F  M+  +GL P  EHY CMVDLLGR+G + +AL+ 
Sbjct: 556 NDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALDF 615

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNL 367
           I  M  + D  VW  LLGACK H N+++ E+A   VI+LEP +   YVLLSN+Y+EA   
Sbjct: 616 INEMPCQVDALVWKTLLGACKTHNNMDIGEIAANHVIQLEPQDPAPYVLLSNLYAEAGLW 675

Query: 368 DGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH 427
           D + R+R +MR++ L K+ G S++ +   +H F  GD +H Q  EIY    KLE L++E 
Sbjct: 676 DQVARIRSLMRDKNLMKEKGLSWMHVDNTIHEFRAGDTSHPQAEEIY---TKLETLIREI 732

Query: 428 DGTKRSDQKNSEEHLNDTEV-------HSEKLAIAFGIINTSPGTE-IVVMKNLRICGDC 479
                    +   H    E+       HSEK+A+AFG+I+ +  T+ I + KNLR+C DC
Sbjct: 733 KVMGYVPDTSVVLHDMSDELKELCLLQHSEKIAVAFGLISCTSATKPIRIFKNLRVCVDC 792

Query: 480 HLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           H  +K VSK   R+ I+RD+ RFH  K G CSC +YW
Sbjct: 793 HSALKYVSKATGREIILRDSNRFHRMKDGECSCGEYW 829



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/274 (32%), Positives = 140/274 (51%), Gaps = 6/274 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD         V + A+ S    N   +EA+ LFG+  E+G+  N+ T+      C   
Sbjct: 106 VFDGMPVGLRDLVSWTAMASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFAS 165

Query: 61  GYLWL-GMCCHCICVKFGL-DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
               L G     +  K G    D SVG  L+ M+ K G +   R++FD + E+ ++ W  
Sbjct: 166 ELFHLAGGAVLGLVFKLGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTL 225

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           +I+ YAQ+G +   +EL+ +M   G  PD  T   +LS+C  LG+  +G ++       G
Sbjct: 226 LITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLG 285

Query: 179 FGSNPFLNNALINMYARCGN---LKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQ 235
             S+  ++  L++MYA+  N   L  AR +F+ MP+  V++WTA++ GY   G  +  V 
Sbjct: 286 LESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVM 345

Query: 236 -LFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
            LF +ML  GIRP+   + S+L AC++ G  D G
Sbjct: 346 ILFCKMLNEGIRPNHITYSSMLKACANLGDQDSG 379



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/254 (33%), Positives = 134/254 (52%), Gaps = 9/254 (3%)

Query: 78  LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE--KGLITWNAMISGYAQNGLATHVLEL 135
           L+ D  V N L+T+Y KC +V   R +FD +P   + L++W AM S  ++NG     L L
Sbjct: 80  LETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASCLSRNGAEAEALRL 139

Query: 136 YREMKSLGVCPDAVTFVGVLSSC-AHLGAHSVGLEVEQQIQANGF-GSNPFLNNALINMY 193
           + E    G+ P+A T      +C A    H  G  V   +   GF G++  +  ALI+M+
Sbjct: 140 FGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFWGTDVSVGCALIDMF 199

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
           A+ G+L   R +FDG+  +TVV WT +I  Y   G+ + AV+LF +ML++G +PD     
Sbjct: 200 AKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLS 259

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA--GQ-LNEALELIES 310
           S+LSAC+  G    G +  + +  + GL+        +VD+  ++  GQ L+ A E+   
Sbjct: 260 SMLSACTELGSFRLG-QQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNR 318

Query: 311 MLVEPDGAVWGALL 324
           M  + +   W ALL
Sbjct: 319 M-PKHNVMAWTALL 331


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  367 bits (942), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 191/513 (37%), Positives = 294/513 (57%), Gaps = 12/513 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+IS Y      SEA+++F +M     + N  T   +L  C+    L LG   H +
Sbjct: 119 VSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGL 178

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK+  D    VG+ L+ MY K G +   R++F+ +PE+ +++  A+I+GYAQ GL    
Sbjct: 179 IVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEA 238

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           LE++  + S G+ P+ VT+  +L++ + L     G +    +          L N+LI+M
Sbjct: 239 LEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDM 298

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML-KSGIRPDGTA 251
           Y++CGNL  AR +FD MP +T +SW A++ GY  HG G   ++LF  M  +  ++PD   
Sbjct: 299 YSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVT 358

Query: 252 FVSVLSACSHAGLTDKGLEYFYGM-KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            ++VLS CSH  + D GL  F GM   +YG +PG EHY C+VD+LGRAG+++EA E I+ 
Sbjct: 359 LLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKR 418

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M  +P   V G+LLGAC++H +V++ E    ++I++EP N G YV+LSN+Y+ A     +
Sbjct: 419 MPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADV 478

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
             VR MM ++ + K+PG S+++ +  +H F   DR H +  E+   + ++   +++    
Sbjct: 479 NNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYV 538

Query: 431 K-------RSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFI 483
                     D++  E+ L     HSEKLA+ FG+I T  G  I V KNLRIC DCH F 
Sbjct: 539 PDLSCVLYDVDEEQKEKMLLG---HSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFA 595

Query: 484 KLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           K+ SK+ +R+  +RD  RFH    G CSC DYW
Sbjct: 596 KIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 141/283 (49%), Gaps = 24/283 (8%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           LL  C+D   L  G   H   +K        +   L+  Y KC  ++  RK+ D++PEK 
Sbjct: 58  LLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKN 117

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
           +++W AMIS Y+Q G ++  L ++ EM      P+  TF  VL+SC       +G ++  
Sbjct: 118 VVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHG 177

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
            I    + S+ F+ ++L++MYA+ G +K+AR IF+ +P + VVS TAII GY   G  E 
Sbjct: 178 LIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEE 237

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG-----------LEYFYGMKNKYGL 281
           A+++F  +   G+ P+   + S+L+A S   L D G           L ++  ++N    
Sbjct: 238 ALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNS--- 294

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
                    ++D+  + G L+ A  L ++M  E     W A+L
Sbjct: 295 ---------LIDMYSKCGNLSYARRLFDNM-PERTAISWNAML 327


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 199/555 (35%), Positives = 316/555 (56%), Gaps = 41/555 (7%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+ +      V + +L S YV      + + +F +M   GV+ N +T+  +LP C + 
Sbjct: 221 VFDDLV--VRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAEL 278

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLI------ 114
             L  G   H   V+ G+ ++  V + L+++Y KC SV   R +FD +P + ++      
Sbjct: 279 KDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVL 338

Query: 115 -----------------------------TWNAMISGYAQNGLATHVLELYREMKSLGVC 145
                                        TWNA+I G  +NG +   +E++R+M+ +G  
Sbjct: 339 TAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFK 398

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P+ +T   +L +C+      +G E+   +  +    +     AL+ MYA+CG+L  +R +
Sbjct: 399 PNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNV 458

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           FD M RK VV+W  +I    +HG+G+ A+ LFD+ML S ++P+   F  VLS CSH+ L 
Sbjct: 459 FDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLV 518

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           ++G++ F  M   + ++P   HY+C+VD+  RAG+LNEA + I+ M +EP  + WGALL 
Sbjct: 519 EEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLA 578

Query: 326 ACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKD 385
           AC+++KNVELA+++  K+ ++EP N G YV L NI   A+      +VR++M+ER + K 
Sbjct: 579 ACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKT 638

Query: 386 PGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD----QKNSEEH 441
           PG S++++  +VH F+VGD+++ ++ +IY  LD+L   ++       +D      + EE 
Sbjct: 639 PGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEK 698

Query: 442 LNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATR 501
                 HSEKLA+AFGI+N +  + I V KNLRICGDCH  IK +SK+V    +VRD+ R
Sbjct: 699 AESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLR 758

Query: 502 FHHFKSGFCSCKDYW 516
           FHHFK+G CSCKD W
Sbjct: 759 FHHFKNGNCSCKDLW 773



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/422 (24%), Positives = 195/422 (46%), Gaps = 40/422 (9%)

Query: 4   ESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL 63
           ++I     T C + LIS    + L +EA+ ++  ++E+G++ +    L     C   G  
Sbjct: 122 DNIPQPDPTTC-STLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGDA 180

Query: 64  WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGY 123
                 H    + G+  D  VGN L+  Y KC  V+  R++FD +  + +++W ++ S Y
Sbjct: 181 LRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCY 240

Query: 124 AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP 183
            + G     ++++REM   GV P+ +T   +L +CA L     G E+      +G   N 
Sbjct: 241 VKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNL 300

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
           F+ +AL+++YA+C ++++AR +FD MP + VVSW  ++  Y  +   E    LF +M + 
Sbjct: 301 FVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRD 360

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-------------------- 283
           G+R D   + +V+  C   G +++ +E F  M+ K G +P                    
Sbjct: 361 GVRADEATWNAVIGGCMENGRSEEAVEMFRKMQ-KMGFKPNEITISSILPACSFSENLRM 419

Query: 284 GPE-------HY--------TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACK 328
           G E       H+        T ++ +  + G LN +  + + M+   D   W  ++ A  
Sbjct: 420 GKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFD-MMRRKDVVAWNTMIIANA 478

Query: 329 IHKNVELAELAFGKVI--KLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDP 386
           +H N + A   F K++  +++P +  +  +LS         +G+     M R+  ++ D 
Sbjct: 479 MHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDA 538

Query: 387 GY 388
            +
Sbjct: 539 NH 540



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 117/247 (47%), Gaps = 2/247 (0%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L+ + +  G  +  R+LFD +P+    T + +IS    +GL+   +++Y  ++  G+ PD
Sbjct: 104 LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 163

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
              F+    +CA  G      EV       G  S+ F+ NALI+ Y +C  ++ AR +FD
Sbjct: 164 MPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFD 223

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            +  + VVSWT++   Y   G     + +F EM  SG++P+     S+L AC+       
Sbjct: 224 DLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKS 283

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           G E  +G   ++G+       + +V L  +   + EA  ++  ++   D   W  +L A 
Sbjct: 284 GKE-IHGFAVRHGMVVNLFVCSALVSLYAKCLSVREA-RMVFDLMPHRDVVSWNGVLTAY 341

Query: 328 KIHKNVE 334
             +K  E
Sbjct: 342 FKNKEYE 348


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 207/550 (37%), Positives = 309/550 (56%), Gaps = 43/550 (7%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFG---KMREQGV-------------- 43
           VFDE  +     V + A+IS Y      S+A++LF    K+   GV              
Sbjct: 300 VFDEMPERN--VVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRP 357

Query: 44  ----EINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVD 99
               E N  T   +L  C       LG   H + +K   +    VG+ L+ MY K G + 
Sbjct: 358 WVCTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIH 417

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
             R +F+ +PE+ +++  A+ISGYAQ GL    LEL+R ++  G+  + VT+ GVL++ +
Sbjct: 418 EARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALS 477

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
            L A  +G +V   +  +   S   L N+LI+MY++CGNL  +R IFD M  +TV+SW A
Sbjct: 478 GLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNA 537

Query: 220 IIGGYGIHGHGEVAVQLFDEML-KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN- 277
           ++ GY  HG G   ++LF  M  ++ ++PD    ++VLS CSH GL DKGL  F  M + 
Sbjct: 538 MLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSG 597

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
           K  ++P  EHY C+VDLLGR+G++ EA E I+ M  EP  A+WG+LLGAC++H NV++ E
Sbjct: 598 KIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHSNVDIGE 657

Query: 338 LAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRV 397
            A  +++++EP N G YV+LSN+Y+ A   + +  +R +M ++ + K+PG S +EL   +
Sbjct: 658 FAGQQLLEIEPGNAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPGRSSIELDQVL 717

Query: 398 HLFMVGDRNHHQTVEIYRMLDKLENLVQE-----------HDGTKRSDQKNSEEHLNDTE 446
           H F   DR+H +  EI   + +L    +E           HD     D++  E+ L    
Sbjct: 718 HTFHASDRSHPRREEICMKVKELSTSFKEVGYVPDLSCVLHD----VDEEQKEKILLG-- 771

Query: 447 VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFK 506
            HSEKLA++FG+I +     I V+KNLRIC DCH F K +SK+  R+  +RD  RFH   
Sbjct: 772 -HSEKLALSFGLIASPASVPIRVIKNLRICVDCHNFAKYISKVYGREVSLRDKNRFHRIV 830

Query: 507 SGFCSCKDYW 516
            G CSC+DYW
Sbjct: 831 GGKCSCEDYW 840



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 124/261 (47%), Gaps = 29/261 (11%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG---- 143
           L+ +Y KC S+     +FD++PE+ +++W AMIS Y+Q G A+  L L+     +     
Sbjct: 284 LIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGV 343

Query: 144 ---------------VC--PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
                          VC  P+  TF  VL+SC       +G ++   I    +  + F+ 
Sbjct: 344 YAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVG 403

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           ++L++MYA+ G + +AR +F+ +P + VVS TAII GY   G  E A++LF  +   G++
Sbjct: 404 SSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMK 463

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH---YTCMVDLLGRAGQLNE 303
            +   +  VL+A S     D G +    + N       P        ++D+  + G L  
Sbjct: 464 SNYVTYTGVLTALSGLAALDLGKQ----VHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTY 519

Query: 304 ALELIESMLVEPDGAVWGALL 324
           +  + ++M  E     W A+L
Sbjct: 520 SRRIFDTMY-ERTVISWNAML 539



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 21/131 (16%)

Query: 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK 212
            +L+ C +  A   G  V   +    +  + FL   LI +Y +C +L  A  +FD MP +
Sbjct: 248 AILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPER 307

Query: 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI---------------------RPDGTA 251
            VVSWTA+I  Y   G+   A+ LF   +K  +                      P+   
Sbjct: 308 NVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFT 367

Query: 252 FVSVLSACSHA 262
           F +VL++C+ +
Sbjct: 368 FATVLTSCTSS 378


>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
 gi|194690792|gb|ACF79480.1| unknown [Zea mays]
          Length = 617

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 183/425 (43%), Positives = 265/425 (62%), Gaps = 5/425 (1%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
           G VD  R LFD +P++  + W+AMI+GY   G +   L L+ EM S G      T V VL
Sbjct: 194 GDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVL 253

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
           ++CA +G    G  V   +++ G   +  L  AL++MY++CG +  A  +F+ M  + V 
Sbjct: 254 TACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVY 313

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           +WT+ + G  ++G G   +QLF  M  +GI+P+G +FV+VL  CS AGL D+G   F  M
Sbjct: 314 TWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSM 373

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVEL 335
            +KYG+ P PEHY CMVDL GRAG+L++A+  I  M +EP   VWGALL A +IH +V+L
Sbjct: 374 -DKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDL 432

Query: 336 AELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKG 395
            + A  K++ +E  N   +V LSNIY+E++N  G+ RVR MM+ + +KK PG+S +E+ G
Sbjct: 433 GKYALDKLLAIESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDG 492

Query: 396 RVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQK----NSEEHLNDTEVHSEK 451
           +VH F VG R H +  EI  ML +++  ++    T  + +       EE      +HSEK
Sbjct: 493 KVHEFYVGGRLHPRYNEIELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSEK 552

Query: 452 LAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCS 511
           LA+AFG+I      EI ++KNLR+C DCH +IKLVSK+ +R+ ++RD  RFHHFK G CS
Sbjct: 553 LALAFGLIVLPEDVEIRIVKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECS 612

Query: 512 CKDYW 516
           C+DYW
Sbjct: 613 CRDYW 617



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 146/323 (45%), Gaps = 13/323 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD   +  H  V ++A+I+GY+      EA+ LF +M   G  +   T++ +L  C   
Sbjct: 202 LFDGMPQRDH--VAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQI 259

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  G   H      G+ +   +G  L+ MY KCG+V    ++F+ + E+ + TW + +
Sbjct: 260 GTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAV 319

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SG A NG+ T  L+L++ M+  G+ P+ V+FV VL  C+  G    G      +   G  
Sbjct: 320 SGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMDKYGVD 379

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFDE 239
             P     ++++Y R G L  A +  + MP +     W A++    IH   ++     D+
Sbjct: 380 PWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDK 439

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR-- 297
           +L   I  +  A    LS         KG+    GM    G++  P   T  VD  G+  
Sbjct: 440 LL--AIESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVD--GKVH 495

Query: 298 ----AGQLNEALELIESMLVEPD 316
                G+L+     IE ML E D
Sbjct: 496 EFYVGGRLHPRYNEIELMLAEMD 518



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 73/125 (58%), Gaps = 1/125 (0%)

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
            A++   A  G++  AR +FDGMP++  V+W+A+I GY   G    A+ LFDEML +G  
Sbjct: 184 TAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTT 243

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
                 VSVL+AC+  G  D+G    + ++++ G+Q   +  T +VD+  + G +  A+E
Sbjct: 244 VGEATLVSVLTACAQIGTLDRGKWVHWYVRSR-GMQMSIKLGTALVDMYSKCGAVVTAME 302

Query: 307 LIESM 311
           + ESM
Sbjct: 303 VFESM 307


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 205/520 (39%), Positives = 297/520 (57%), Gaps = 19/520 (3%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLL-PICVDP---GYLWLGM 67
            V +N +I+G      +  AV LF +M+ +G+     T L LL  +  +P     +  G 
Sbjct: 388 AVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGR 447

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQ---VPEKGLITWNAMISGYA 124
             H   V  G   + ++G  ++ MY  CG++D     F +        +++WNA+IS  +
Sbjct: 448 KLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLS 507

Query: 125 QNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF 184
           Q+G     L  +R M   GV P+ +T V VL +CA   A + G  V   ++ +G  SN F
Sbjct: 508 QHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGEIVHDHLRHSGMESNLF 567

Query: 185 LNNALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
           +  AL +MY RCG+L+ AR IF+ +   + VV + A+I  Y  +G    A++LF  M + 
Sbjct: 568 VATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQE 627

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
           G RPD  +FVSVLSACSH GL D+G E F  M+  YG+ P  +HY C VD+LGRAG L +
Sbjct: 628 GSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLAD 687

Query: 304 ALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE 363
           A ELI  M V+P   VW  LLGAC+ +++V+   LA   V +L+P +   YV+LSNI + 
Sbjct: 688 AEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAG 747

Query: 364 ARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENL 423
           A   D    VR  M  R L+K+ G S++E+K RVH F+ GDR+H ++ EIYR L++L   
Sbjct: 748 AGKWDEAAEVRTEMESRGLRKEAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAE 807

Query: 424 VQE-------HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
           ++E           ++ D+   E  L     HSE+LAIA G++++S  T + VMKNLR+C
Sbjct: 808 IREIGYVPDTRLVLRKVDEAEKERLLCQ---HSERLAIALGVMSSSTDT-VRVMKNLRVC 863

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DCH   K +SKIV+++ +VRD  RFHHF  G CSC DYW
Sbjct: 864 EDCHNATKFISKIVNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/333 (31%), Positives = 168/333 (50%), Gaps = 14/333 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD + +     V +NA++  Y  +  +SEA  LF +M  +G+  + VT++     C   
Sbjct: 282 VFDRAAERD--VVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNASTGC--- 336

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H   ++ GLD D  +GN L+ MY +CGS +  R LF ++P    ++WN MI
Sbjct: 337 SSLRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKRIPCNA-VSWNTMI 395

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA----HLGAHSVGLEVEQQIQA 176
           +G +Q G     +EL++ M+  G+ P   T++ +L + A       A + G ++  +I +
Sbjct: 396 AGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVS 455

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDG---MPRKTVVSWTAIIGGYGIHGHGEVA 233
            G+ S P +  A++ MYA CG + +A A F       R  VVSW AII     HGHG+ A
Sbjct: 456 CGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRA 515

Query: 234 VQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293
           +  F  M   G+ P+    V+VL AC+ A    +G E  +      G++      T +  
Sbjct: 516 LGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEG-EIVHDHLRHSGMESNLFVATALAS 574

Query: 294 LLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
           + GR G L  A E+ E + VE D  ++ A++ A
Sbjct: 575 MYGRCGSLESAREIFEKVAVERDVVIFNAMIAA 607



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 110/370 (29%), Positives = 174/370 (47%), Gaps = 38/370 (10%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +  +I+ Y  +     A+ +F +M+++GV  ++VT L +L  C   G L  G   H   V
Sbjct: 96  WTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIV 155

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           + GL     + N L+ +Y  CG V     LF+++ E+ L++WNA I+  AQ+G     LE
Sbjct: 156 ESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKM-ERDLVSWNAAIAANAQSGDLGIALE 214

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHL-GAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
           L++ M+  GV P  +T V  L+ CA +  A ++   V +    +G      ++ AL + Y
Sbjct: 215 LFQRMQLEGVRPARITLVIALTVCATIRQAQAIHFIVRE----SGLEQTLVVSTALASAY 270

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
           AR G+L +A+ +FD    + VVSW A++G Y  HGH   A  LF  ML  GI P     V
Sbjct: 271 ARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLV 330

Query: 254 SVLSACS--------HAGLTDKGLEYFYGMKNK----YGLQPGPEH-------------- 287
           +  + CS        H    +KGL+    + N     Y     PE               
Sbjct: 331 NASTGCSSLRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKRIPCNAVS 390

Query: 288 YTCMVDLLGRAGQLNEALELIESMLVE---PDGAVWGALLGACKIHKNVELAE-LAFGKV 343
           +  M+    + GQ+  A+EL + M +E   P  A +  LL A  +  N E A  +A G+ 
Sbjct: 391 WNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEA--VASNPEEARAMAEGRK 448

Query: 344 IKLEPMNTGY 353
           +    ++ GY
Sbjct: 449 LHSRIVSCGY 458



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 139/292 (47%), Gaps = 8/292 (2%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           LL    D   L  G   H   V  GL+ +   GN L+ +Y+KC S+    ++F ++  + 
Sbjct: 35  LLRAAGDDRLLSQGRRIHARIVSLGLEEEL--GNHLLRLYLKCESLGDVEEVFSRLEVRD 92

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
             +W  +I+ Y ++G A   + ++  M+  GV  DAVTF+ VL +CA LG  S G  +  
Sbjct: 93  EASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHA 152

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
            I  +G      L N L+++Y  CG +  A  +F+ M R  +VSW A I      G   +
Sbjct: 153 WIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKMERD-LVSWNAAIAANAQSGDLGI 211

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
           A++LF  M   G+RP     V  L+ C+    T +  +  + +  + GL+      T + 
Sbjct: 212 ALELFQRMQLEGVRPARITLVIALTVCA----TIRQAQAIHFIVRESGLEQTLVVSTALA 267

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI 344
               R G L +A E+ +    E D   W A+LGA   H ++  A L F +++
Sbjct: 268 SAYARLGHLYQAKEVFDRA-AERDVVSWNAMLGAYAQHGHMSEAALLFARML 318



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 149/327 (45%), Gaps = 20/327 (6%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA I+    +  +  A+ LF +M+ +GV    +T++  L +C     +      H I
Sbjct: 194 VSWNAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVC---ATIRQAQAIHFI 250

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             + GL+    V   L + Y + G +   +++FD+  E+ +++WNAM+  YAQ+G  +  
Sbjct: 251 VRESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEA 310

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLG----AHSVGLEVEQQIQANGFGSNPFLNNA 188
             L+  M   G+ P  VT V   + C+ L      H   LE        G   +  L NA
Sbjct: 311 ALLFARMLHEGISPSKVTLVNASTGCSSLRFGRMIHGCALE-------KGLDRDIVLGNA 363

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           L++MY RCG+ ++AR +F  +P    VSW  +I G    G  + AV+LF  M   G+ P 
Sbjct: 364 LLDMYTRCGSPEEARHLFKRIP-CNAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPV 422

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKY---GLQPGPEHYTCMVDLLGRAGQLNEAL 305
              ++++L A +      + +     + ++    G    P   T +V +    G ++EA 
Sbjct: 423 RATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAA 482

Query: 306 ELIESMLVEP--DGAVWGALLGACKIH 330
              +   +E   D   W A++ +   H
Sbjct: 483 ASFQRGAMEDRHDVVSWNAIISSLSQH 509



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 139/280 (49%), Gaps = 10/280 (3%)

Query: 5   SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLW 64
           +++  H  V +NA+IS    +     A+  F +M   GV  N +T + +L  C     L 
Sbjct: 489 AMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALT 548

Query: 65  LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP-EKGLITWNAMISGY 123
            G   H      G++ +  V   L +MY +CGS++  R++F++V  E+ ++ +NAMI+ Y
Sbjct: 549 EGEIVHDHLRHSGMESNLFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAY 608

Query: 124 AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI-QANGFGSN 182
           +QNGLA   L+L+  M+  G  PD  +FV VLS+C+H G    G E+ + + Q+ G   +
Sbjct: 609 SQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPS 668

Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRK-TVVSWTAIIGG---YGIHGHGEVAVQLFD 238
                  +++  R G L  A  +   M  K TV+ W  ++G    Y     G +A  +  
Sbjct: 669 EDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVR 728

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278
           E L  G   D +A+V + +  + AG  D+  E    M+++
Sbjct: 729 E-LDPG---DESAYVVLSNILAGAGKWDEAAEVRTEMESR 764


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 205/520 (39%), Positives = 298/520 (57%), Gaps = 19/520 (3%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLL-PICVDP---GYLWLGM 67
            V +N +I+G      +  A+ LF +M+ +G+     T L LL  +  +P     +  G 
Sbjct: 388 AVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGR 447

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQ---VPEKGLITWNAMISGYA 124
             H   V  G   + ++G  ++ MY  CG++D     F +        +++WNA+IS  +
Sbjct: 448 KLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLS 507

Query: 125 QNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF 184
           Q+G     L  +R M   GV P+ +T V VL +CA   A + G+ V   ++ +G  SN F
Sbjct: 508 QHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLRHSGMESNVF 567

Query: 185 LNNALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
           +  AL +MY RCG+L+ AR IF+ +   + VV + A+I  Y  +G    A++LF  M + 
Sbjct: 568 VATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQE 627

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
           G RPD  +FVSVLSACSH GL D+G E F  M+  YG+ P  +HY C VD+LGRAG L +
Sbjct: 628 GSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLAD 687

Query: 304 ALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE 363
           A ELI  M V+P   VW  LLGAC+ +++V+   LA   V +L+P +   YV+LSNI + 
Sbjct: 688 AEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAG 747

Query: 364 ARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENL 423
           A   D    VR  M  R L+K  G S++E+K RVH F+ GDR+H ++ EIYR L++L   
Sbjct: 748 AGKWDEAAEVRTEMESRGLRKQAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAE 807

Query: 424 VQE----HDGT---KRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
           ++E     D     ++ D+   E  L     HSE+LAIA G++++S  T + VMKNLR+C
Sbjct: 808 IREIGYVPDTRLVLRKVDEAEKERLLCQ---HSERLAIALGVMSSSTDT-VRVMKNLRVC 863

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DCH   K +SKIV+++ +VRD  RFHHF  G CSC DYW
Sbjct: 864 EDCHNATKFISKIVNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 105/333 (31%), Positives = 170/333 (51%), Gaps = 14/333 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD + +     V +NA++  Y  +  +SEA  LF +M  +G+  + VT++     C   
Sbjct: 282 VFDRAAERD--VVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNASTGC--- 336

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H   ++ GLD D  +GN L+ MY +CGS +  R LF+ +P    ++WN MI
Sbjct: 337 SSLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIPGNA-VSWNTMI 395

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA----HLGAHSVGLEVEQQIQA 176
           +G +Q G     LEL++ M+  G+ P   T++ +L + A       A + G ++  +I +
Sbjct: 396 AGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVS 455

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDG---MPRKTVVSWTAIIGGYGIHGHGEVA 233
            G+ S P +  A++ MYA CG + +A A F       R  VVSW AII     HGHG+ A
Sbjct: 456 CGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRA 515

Query: 234 VQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293
           +  F  M   G+ P+    V+VL AC+ A    +G+     +++  G++      T +  
Sbjct: 516 LGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLRHS-GMESNVFVATALAS 574

Query: 294 LLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
           + GR G L  A E+ E + VE D  ++ A++ A
Sbjct: 575 MYGRCGSLESAREIFEKVAVERDVVIFNAMIAA 607



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/372 (30%), Positives = 176/372 (47%), Gaps = 43/372 (11%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +  +I+ Y  +     A+ +F +M+++GV  ++VT L +L  C   G L  G   H   V
Sbjct: 96  WTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIV 155

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           + GL+    + N L+ +Y  CG V     LF+++ E+ L++WNA I+  AQ+G     LE
Sbjct: 156 ESGLEGKSVLANLLLHIYGSCGCVASAMLLFERM-ERDLVSWNAAIAANAQSGDLDMALE 214

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHL----GAHSVGLEVEQQIQANGFGSNPFLNNALI 190
           L++ M+  GV P  +T V  LS CA +      HS+       ++ +G      ++ AL 
Sbjct: 215 LFQRMQLEGVRPARITLVITLSVCAKIRQARAIHSI-------VRESGLEQTLVVSTALA 267

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           + YAR G+L +A+ +FD    + VVSW A++G Y  HGH   A  LF  ML  GI P   
Sbjct: 268 SAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKV 327

Query: 251 AFVSVLSACS--------HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
             V+  + CS        HA   +KGL+    + N             ++D+  R G   
Sbjct: 328 TLVNASTGCSSLRFGRMIHACALEKGLDRDIVLGN------------ALLDMYTRCGSPE 375

Query: 303 EALELIESMLVEPDGAV-WGALLGACKIHKNVELAELAFGKVIKLE---PMNTGYYVLLS 358
           EA  L E +   P  AV W  ++        ++ A L   + ++LE   P+   Y  LL 
Sbjct: 376 EARHLFEGI---PGNAVSWNTMIAGSSQKGQMKRA-LELFQRMQLEGMAPVRATYLNLLE 431

Query: 359 NIYS---EARNL 367
            + S   EAR +
Sbjct: 432 AVASNPEEARAM 443



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 153/327 (46%), Gaps = 20/327 (6%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA I+    +  +  A+ LF +M+ +GV    +T++  L +C     +      H I
Sbjct: 194 VSWNAAIAANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCAK---IRQARAIHSI 250

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             + GL+    V   L + Y + G +D  +++FD+  E+ +++WNAM+  YAQ+G  +  
Sbjct: 251 VRESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEA 310

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLG----AHSVGLEVEQQIQANGFGSNPFLNNA 188
             L+  M   G+ P  VT V   + C+ L      H+  LE        G   +  L NA
Sbjct: 311 ALLFARMLHEGIPPSKVTLVNASTGCSSLRFGRMIHACALE-------KGLDRDIVLGNA 363

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           L++MY RCG+ ++AR +F+G+P    VSW  +I G    G  + A++LF  M   G+ P 
Sbjct: 364 LLDMYTRCGSPEEARHLFEGIP-GNAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPV 422

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKY---GLQPGPEHYTCMVDLLGRAGQLNEAL 305
              ++++L A +      + +     + ++    G    P   T +V +    G ++EA 
Sbjct: 423 RATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAA 482

Query: 306 ELIESMLVEP--DGAVWGALLGACKIH 330
              +   +E   D   W A++ +   H
Sbjct: 483 ASFQRGAMEDRHDVVSWNAIISSLSQH 509



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 139/292 (47%), Gaps = 8/292 (2%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           LL    D   L  G   H   V  GL+ +   GN L+ +Y+KC S+    ++F ++  + 
Sbjct: 35  LLRAAGDDRLLSQGRRIHARIVSLGLEEEL--GNHLLRLYLKCESLGDVEEVFSRLEVRD 92

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
             +W  +I+ Y ++G A   + ++  M+  GV  DAVTF+ VL +CA LG  S G  +  
Sbjct: 93  EASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHA 152

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
            I  +G      L N L+++Y  CG +  A  +F+ M R  +VSW A I      G  ++
Sbjct: 153 WIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERMERD-LVSWNAAIAANAQSGDLDM 211

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
           A++LF  M   G+RP     V  LS C+      +     + +  + GL+      T + 
Sbjct: 212 ALELFQRMQLEGVRPARITLVITLSVCAKI----RQARAIHSIVRESGLEQTLVVSTALA 267

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI 344
               R G L++A E+ +    E D   W A+LGA   H ++  A L F +++
Sbjct: 268 SAYARLGHLDQAKEVFDRA-AERDVVSWNAMLGAYAQHGHMSEAALLFARML 318



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 140/280 (50%), Gaps = 10/280 (3%)

Query: 5   SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLW 64
           +++  H  V +NA+IS    +     A+  F +M   GV  N +T + +L  C     L 
Sbjct: 489 AMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALT 548

Query: 65  LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP-EKGLITWNAMISGY 123
            G+  H      G++ +  V   L +MY +CGS++  R++F++V  E+ ++ +NAMI+ Y
Sbjct: 549 EGVIVHDHLRHSGMESNVFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAY 608

Query: 124 AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI-QANGFGSN 182
           +QNGLA   L+L+  M+  G  PD  +FV VLS+C+H G    G E+ + + Q+ G   +
Sbjct: 609 SQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPS 668

Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRK-TVVSWTAIIGG---YGIHGHGEVAVQLFD 238
                  +++  R G L  A  +   M  K TV+ W  ++G    Y     G +A  +  
Sbjct: 669 EDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVR 728

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278
           E L  G   D +A+V + +  + AG  D+  E    M+++
Sbjct: 729 E-LDPG---DESAYVVLSNILAGAGKWDEAAEVRTEMESR 764


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 193/525 (36%), Positives = 300/525 (57%), Gaps = 11/525 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYV----LNSLVSEAVSLFGKMREQGVEINSVTMLCLLPI 56
           VFD  I      V YN L+ GY           EA  +F +M E+GV  ++ T + LL  
Sbjct: 89  VFDR-IPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFVSLLKA 147

Query: 57  CVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
           C        G   H + VK G      V   L+ MY +CG V   R +FD++  + ++++
Sbjct: 148 CASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSY 207

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
           NAMI+   ++ L    L L+REM++ G+ P +VT + VLS+CA LGA  +G  +   I+ 
Sbjct: 208 NAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRK 267

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
               S   +N ALI+MYA+CG+L+ A  +F  M  +   +W+ ++  Y  HG+G  A+ +
Sbjct: 268 MRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISM 327

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           F+EM K G++PD   F+ VL ACSH+G+  +GL+YF  M+ +YG+  G +HY C+ DLL 
Sbjct: 328 FEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMR-EYGIVSGIKHYGCVTDLLA 386

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356
           R+GQL  A + I+ + ++P   +W  LL AC  H +V++ +  F ++++L+  + G YV+
Sbjct: 387 RSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVI 446

Query: 357 LSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRM 416
            SN+ +     + +  VR +M E+ + K PG S +E+   VH F  GD +H  + E  RM
Sbjct: 447 FSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRM 506

Query: 417 LDKLENLVQEHDGTKRSD-----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMK 471
           +D++   ++       +      +   EE       HSEKLAI+FG++NT+PGT + ++K
Sbjct: 507 VDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVK 566

Query: 472 NLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           NLR+C DCH   KLVS + +R+ I+RD  RFHHF+ G CSC DYW
Sbjct: 567 NLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 135/293 (46%), Gaps = 17/293 (5%)

Query: 50  MLCLLPICVDPGYLWLGMCCHCICVKFG--LDLDFSVGNCLMTMYVKCGS-----VDYGR 102
           +L  LP C     L      H + VK G  L    +    L+T+  + G+     + Y R
Sbjct: 31  LLAYLPHCTSLRAL---AQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYAR 87

Query: 103 KLFDQVPEKGLITW-NAMISGYAQNGL----ATHVLELYREMKSLGVCPDAVTFVGVLSS 157
           ++FD++P  G + W N ++ GYA+ G     A     ++  M   GV PD  TFV +L +
Sbjct: 88  QVFDRIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFVSLLKA 147

Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
           CA   A   G +        G   + ++   LINMYA CG+++ AR +FD M  + VVS+
Sbjct: 148 CASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSY 207

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
            A+I           A+ LF EM   G++P     +SVLSAC+  G  + G  + +    
Sbjct: 208 NAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELG-RWIHDYIR 266

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           K  L    +  T ++D+  + G L +A+ + + M    D   W  ++ A   H
Sbjct: 267 KMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESR-DKQAWSVMMVAYANH 318


>gi|302753382|ref|XP_002960115.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
 gi|300171054|gb|EFJ37654.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
          Length = 653

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 194/510 (38%), Positives = 289/510 (56%), Gaps = 7/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+I+ Y L     +A SLF +M   G   +  T   +L  C  P  L  G   H  
Sbjct: 145 VSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVR 204

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               G D DF++ N L++MY +CGS++  R+ F  + +K L  WN M++ YAQ       
Sbjct: 205 ITARGFDRDFAMQNNLISMYTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDA 264

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L LY+ M   G  PD  TF  V+ SCA LGA   G  + +   + GF  +  L  AL+NM
Sbjct: 265 LFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTALVNM 324

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG+L  A+  FDG+  K VVSW+A+I     HGH E A++L   M   GI  +    
Sbjct: 325 YAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTA 384

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            SVL ACSH G   +G++YF G+   +G++   E+    +DLLGRAG L EA  ++ +M 
Sbjct: 385 SSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAGWLKEAEHVLHTMP 444

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            +        LLG CK+H +V   +    +++ LEP N G YVLL+N+Y+ A   D + +
Sbjct: 445 FKVSFVALVTLLGGCKVHGDVRRGKAFTKRIVALEPENPGSYVLLNNMYAAAGRWDDVAK 504

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           +R  MR++ +K+  G S +E + +++ F VGD ++ + +EI   L++L + ++E +G   
Sbjct: 505 LRRYMRKKGVKRQTGCSSIEYRDKIYEFSVGDTSNPRNLEIRAELERLYSRMKEEEGYV- 563

Query: 433 SDQKNSEEHLNDT------EVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
            D ++    ++D       + HSEK+A+ FG+I + PG+ + ++KNLR+C DCH   KL 
Sbjct: 564 PDTRDVFHDVSDDKKEELLKFHSEKMAMGFGLITSPPGSTLRIIKNLRVCSDCHTVGKLA 623

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SKI  R+ IVRD TRFHHF+ G CSC DYW
Sbjct: 624 SKITGRRIIVRDGTRFHHFEGGICSCGDYW 653



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 161/366 (43%), Gaps = 34/366 (9%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD  IK  +    ++ L+  YV N++  EA+ ++ +M  + + I++ T+  +L  C   
Sbjct: 4   VFDR-IKQRN-AFSWSILVECYVQNAMYQEALEVYKEMVREEISIDAYTLSSVLAACTKL 61

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCG------------------------ 96
             +  G        + G + D  V   L+ ++ KCG                        
Sbjct: 62  LDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTAM 121

Query: 97  ------SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVT 150
                 S+   + LF  +  K +++WNAMI+ Y   G       L+  M +LG  PD  T
Sbjct: 122 IGAYCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYT 181

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
           F  +L +CA       G  +  +I A GF  +  + N LI+MY RCG+L+ AR  F  + 
Sbjct: 182 FSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMYTRCGSLESARRYFYSIE 241

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270
           +K + +W  ++  Y     G+ A+ L+  ML  G  PD   F SV+ +C+  G   +G +
Sbjct: 242 KKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREG-K 300

Query: 271 YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           + +      G +      T +V++  + G L +A +  +  +   D   W A++ A   H
Sbjct: 301 FIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDG-ISNKDVVSWSAMIAASAQH 359

Query: 331 KNVELA 336
            + E A
Sbjct: 360 GHAEEA 365



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 118/267 (44%), Gaps = 54/267 (20%)

Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160
            R++FD++ ++   +W+ ++  Y QN +    LE+Y+EM    +  DA T   VL++C  
Sbjct: 1   ARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVREEISIDAYTLSSVLAACTK 60

Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR------------------------- 195
           L     G  V+++ +  GF  +  +  +LI+++A+                         
Sbjct: 61  LLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTA 120

Query: 196 -----CGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
                CG+LK ++++F  M  K VVSW A+I  Y ++GH + A  LF  M   G  PD  
Sbjct: 121 MIGAYCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIY 180

Query: 251 AFVSVLSACS-----------HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
            F S+L AC+           H  +T +G +  + M+N             ++ +  R G
Sbjct: 181 TFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNN------------LISMYTRCG 228

Query: 300 QLNEALELIESMLVEPDGAVWGALLGA 326
            L  A     S+  +  GA W  +L A
Sbjct: 229 SLESARRYFYSIEKKELGA-WNTMLAA 254



 Score = 46.6 bits (109), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 5/138 (3%)

Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261
           AR +FD + ++   SW+ ++  Y  +   + A++++ EM++  I  D     SVL+AC+ 
Sbjct: 1   ARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVREEISIDAYTLSSVLAACTK 60

Query: 262 AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPD----G 317
               ++G         + G +      T ++ L  + G L EA  +  SM    D     
Sbjct: 61  LLDVEEG-RMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVT 119

Query: 318 AVWGALLGACKIHKNVEL 335
           A+ GA  G+ K  K++ L
Sbjct: 120 AMIGAYCGSLKDSKSLFL 137


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 197/518 (38%), Positives = 281/518 (54%), Gaps = 6/518 (1%)

Query: 5   SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLW 64
           S+      V + ALI+G V N   + A+  F  MR   ++ N  T  C            
Sbjct: 66  SLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPL 125

Query: 65  LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYA 124
           +G   H + VK G   D  VG     MY K G  +  RK+FD++PE+ + TWNA +S   
Sbjct: 126 VGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSV 185

Query: 125 QNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF 184
             G     L  + E +  G+ P       VLS+CA L    VG  V           N F
Sbjct: 186 LEGRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIF 245

Query: 185 LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML--K 242
           + +AL++MY +CG+++ A   FD MP + +V+W A+IGGY   G  ++AV LFDEM    
Sbjct: 246 VGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGS 305

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
             + P+   FV VLSACS AG  + G+E F  M+ +YG++PG EHY C+VDLLGRAG + 
Sbjct: 306 HRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVE 365

Query: 303 EALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362
           +A + I+ M + P  +VWGALLGA K+    EL ++A   + +L+P+++G +VLLSN+++
Sbjct: 366 QAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFA 425

Query: 363 EARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLEN 422
            A   +    VR  M++  +KK  G S++     VH+F   D +H +  EI  ML KL  
Sbjct: 426 AAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRG 485

Query: 423 LVQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGD 478
            ++      D +        EE   +   HSEK+A+AFG+I+   G  I + KNLRICGD
Sbjct: 486 EMEAAGYIPDTSFALFDLEEEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKNLRICGD 545

Query: 479 CHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           CH  IK +S IV R+ IVRD   FH F+   CSC+DYW
Sbjct: 546 CHSAIKFISGIVGREIIVRDNNLFHRFRDNQCSCRDYW 583



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 154/343 (44%), Gaps = 15/343 (4%)

Query: 65  LGMCCHCICVKFGLD--LDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISG 122
           LG   H   +K  LD  L   + N L+ MY K    +  + L    P + ++TW A+I+G
Sbjct: 24  LGRAAHAQIIK-TLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAG 82

Query: 123 YAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN 182
             QNG  T  L  +  M+   + P+  TF     +   L +  VG +V       G  S+
Sbjct: 83  SVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISD 142

Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
            F+  +  +MY++ G  ++AR +FD MP + + +W A +    + G  + A+  F E  K
Sbjct: 143 VFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEARK 202

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
            GI P      SVLSAC+   + + G +  + +  K  +       + +VD+ G+ G + 
Sbjct: 203 EGIEPTDFMVSSVLSACAGLSVLEVG-KSVHTLAVKACVVGNIFVGSALVDMYGKCGSIE 261

Query: 303 EALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI----KLEPMNTGYYVLLS 358
           +A    + M  E +   W A++G        ++A   F ++     ++ P    +  +LS
Sbjct: 262 DAERAFDEM-PERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLS 320

Query: 359 NIYSEARNLDGIMRVRMMMRERRLKKDPGYSY----VELKGRV 397
              S A +++  M +   MR  R   +PG  +    V+L GR 
Sbjct: 321 AC-SRAGSVNVGMEIFESMRG-RYGIEPGAEHYACVVDLLGRA 361


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 196/526 (37%), Positives = 306/526 (58%), Gaps = 17/526 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVD 59
           +FDE  +    +  + A+++GYV      EA+ L+  M R    + N  T+   +     
Sbjct: 175 LFDEMPERDSYS--WTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAA 232

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              +  G   H   V+ GLD D  + + LM MY KCG +D  R +FD++ +K +++W +M
Sbjct: 233 IKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSM 292

Query: 120 ISGYAQNGLATHVLELYREMKSLGVC--PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
           I  Y ++        L+ E+  +G C  P+  TF GVL++CA L    +G +V   +   
Sbjct: 293 IDRYFKSSRWREGFSLFSEL--IGSCERPNEYTFSGVLNACADLTTEELGRQVHGYMTRV 350

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
           GF    F +++LI+MY +CGN++ AR + DG P+  +VS T++IGGY  +G  + A++ F
Sbjct: 351 GFDPYSFASSSLIDMYTKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEALKYF 410

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
           D +LKSG +PD   FV+VLSAC+HAGL +KGLE+FY +  K+ L    +HYTC+VDLL R
Sbjct: 411 DLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHDLTHTSDHYTCLVDLLAR 470

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
           +G+  +   ++  M ++P   +W ++LG C  + N++LAE A  ++ K+EP N   YV +
Sbjct: 471 SGRFEQLKSVLSEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTM 530

Query: 358 SNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML 417
           +NIY+ A   +   ++R  M+E  + K PG S+ E+K + H+F+  D +H    +I   L
Sbjct: 531 ANIYAAAGKWEEEGKMRKRMQEIGITKKPGSSWTEIKRKRHVFIAADTSHPMYNQIIEFL 590

Query: 418 DKLENLVQEHDGTKRS-------DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVM 470
            +L   ++E      +       + +  EE+L     HSEKLA+AF I++T  GT I V 
Sbjct: 591 GELRKKMKEEGYVPATSLVLHDVEDEQKEENLV---YHSEKLAVAFAILSTEEGTAIKVF 647

Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KNLR C DCH  IK +SKI  R+  +RD+TRFH F++G CSC+DYW
Sbjct: 648 KNLRSCVDCHSAIKFISKITKRKITIRDSTRFHCFENGQCSCRDYW 693



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 146/334 (43%), Gaps = 40/334 (11%)

Query: 25  NSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSV 84
             L+ EAV L G+ ++        T   L+ +C     L  G   H      G      +
Sbjct: 69  QKLLREAVQLLGRAKKPPAS----TYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVI 124

Query: 85  GNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM----- 139
            N ++ MY KCGS+   RK+FD++PE+ + +WN M++GYA+ GL      L+ EM     
Sbjct: 125 WNRILGMYAKCGSLVDARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDEMPERDS 184

Query: 140 ---------------------------KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
                                      +     P+  T    +++ A +     G E+  
Sbjct: 185 YSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKEIHG 244

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
            I   G  S+  L ++L++MY +CG + +AR IFD +  K VVSWT++I  Y        
Sbjct: 245 HIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSRWRE 304

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL-EYFYGMKNKYGLQPGPEHYTCM 291
              LF E++ S  RP+   F  VL+AC  A LT + L    +G   + G  P     + +
Sbjct: 305 GFSLFSELIGSCERPNEYTFSGVLNAC--ADLTTEELGRQVHGYMTRVGFDPYSFASSSL 362

Query: 292 VDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           +D+  + G +  A  +++    +PD     +L+G
Sbjct: 363 IDMYTKCGNIESARHVVDG-CPKPDLVSLTSLIG 395



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 71/145 (48%), Gaps = 7/145 (4%)

Query: 102 RKLFDQVPEKGLITWNAMISGYAQNGLATHVL---ELYREMKSL---GVCPDAVTFVGVL 155
           +K FD   E G +    +     + G A  VL   +L RE   L      P A T+  ++
Sbjct: 36  KKFFDSKLEDGGVVVERLCRA-NRFGEAIDVLCGQKLLREAVQLLGRAKKPPASTYCNLI 94

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
             C+   A   G +V + I+ +GF     + N ++ MYA+CG+L  AR +FD MP + V 
Sbjct: 95  QVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRILGMYAKCGSLVDARKVFDEMPERDVC 154

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEM 240
           SW  ++ GY   G  E A  LFDEM
Sbjct: 155 SWNVMVNGYAEVGLLEEARNLFDEM 179


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 181/420 (43%), Positives = 269/420 (64%), Gaps = 2/420 (0%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +F +S  +  + VC  A+ISGYVLN L ++A+ +F  + E+ +  N+VT+  +LP C   
Sbjct: 231 IFKQS-TNVDIVVC-TAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGL 288

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L LG   H   +K GLD    VG+ +M MY KCG +D   ++F ++PEK  + WNA+I
Sbjct: 289 ATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAII 348

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           +  +QNG     ++L+R+M   G+  D V+    LS+CA+L A   G  +   +    F 
Sbjct: 349 TNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFD 408

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           S  F  +ALI+MY +CGNL  AR +FD M  K  VSW +II  YG HGH EV++ LF +M
Sbjct: 409 SEVFAESALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHKM 468

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           L+ GI+PD   F+++LSAC HAG  DKG++YF  M  +YG+    EHY C+VDL GRAG+
Sbjct: 469 LEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGR 528

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           LNEA E I++M   PD  VWG LLGAC++H NVELAE+A   ++ L+P N+G YVLLSN+
Sbjct: 529 LNEAFETIKNMPFSPDDGVWGTLLGACRVHGNVELAEVASRCLLDLDPENSGCYVLLSNV 588

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           +++A     + ++R +M++R ++K PGYS++E+    H+F+  D +H ++ +IY +L+ L
Sbjct: 589 HADAGQWGSVRKIRSLMKKRGVQKVPGYSWIEVNKTTHMFVAADGSHPESAQIYSVLNNL 648



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 184/371 (49%), Gaps = 6/371 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +N +I+G+V N  + EA  LF +M   GV  +S+T    LP   +   L  G   H 
Sbjct: 139 VVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHG 198

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             ++ G+ LD  + + L+ +Y KC  V    K+F Q     ++   A+ISGY  NGL   
Sbjct: 199 YILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNND 258

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            LE++R +    + P+AVT   VL +CA L   ++G E+   I  +G      + +A+++
Sbjct: 259 ALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAIMD 318

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+CG L  A  IF  MP K  V W AII     +G  + A+ LF +M + G+  D  +
Sbjct: 319 MYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVS 378

Query: 252 FVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
             + LSAC++      G   + + +K  +  +   E  + ++D+ G+ G L+ A   +  
Sbjct: 379 ISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAE--SALIDMYGKCGNLSVA-RCVFD 435

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLD 368
           M+ E +   W +++ A   H ++E++   F K+++  ++P +  +  +LS      +   
Sbjct: 436 MMREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDK 495

Query: 369 GIMRVRMMMRE 379
           GI   R M  E
Sbjct: 496 GIQYFRCMTEE 506



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 97/316 (30%), Positives = 156/316 (49%), Gaps = 2/316 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +++G+V     + AV +F  MR    + NS+T   +L IC        G   H +
Sbjct: 39  VLWNVMLNGFVKCGEPNSAVKVFEDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGL 98

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +  G   D  V N L+ MY K G +    KLF+ +P+  ++TWN MI+G+ QNG     
Sbjct: 99  VISCGFHFDPLVANALVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEA 158

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
             L+ EM S GV PD++TF   L S     +   G E+   I  +G   + FL +ALI++
Sbjct: 159 SLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDI 218

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +C ++  A  IF       +V  TAII GY ++G    A+++F  +L+  + P+    
Sbjct: 219 YFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTL 278

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            SVL AC+     + G E    +  K+GL       + ++D+  + G+L+ A ++   M 
Sbjct: 279 ASVLPACAGLATLNLGKELHANIL-KHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRM- 336

Query: 313 VEPDGAVWGALLGACK 328
            E D   W A++  C 
Sbjct: 337 PEKDAVCWNAIITNCS 352



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 110/194 (56%)

Query: 77  GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY 136
           G ++D  VG+ L+ +Y + G ++  R+LFD++P K  + WN M++G+ + G     ++++
Sbjct: 2   GFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVF 61

Query: 137 REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196
            +M++    P+++TF  VLS CA       G ++   + + GF  +P + NAL+ MY++ 
Sbjct: 62  EDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKF 121

Query: 197 GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL 256
           G L  A  +F+ MP   VV+W  +I G+  +G  + A  LF EM+ +G+ PD   F S L
Sbjct: 122 GQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFL 181

Query: 257 SACSHAGLTDKGLE 270
            + + +    +G E
Sbjct: 182 PSVTESASLKQGKE 195


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 199/555 (35%), Positives = 316/555 (56%), Gaps = 41/555 (7%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+ +      V + +L S YV      + + +F +M   GV+ N +T+  +LP C + 
Sbjct: 135 VFDDLV--VRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAEL 192

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLI------ 114
             L  G   H   V+ G+ ++  V + L+++Y KC SV   R +FD +P + ++      
Sbjct: 193 KDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVL 252

Query: 115 -----------------------------TWNAMISGYAQNGLATHVLELYREMKSLGVC 145
                                        TWNA+I G  +NG +   +E++R+M+ +G  
Sbjct: 253 TAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFK 312

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P+ +T   +L +C+      +G E+   +  +    +     AL+ MYA+CG+L  +R +
Sbjct: 313 PNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNV 372

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           FD M RK VV+W  +I    +HG+G+ A+ LFD+ML S ++P+   F  VLS CSH+ L 
Sbjct: 373 FDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLV 432

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           ++G++ F  M   + ++P   HY+C+VD+  RAG+LNEA + I+ M +EP  + WGALL 
Sbjct: 433 EEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLA 492

Query: 326 ACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKD 385
           AC+++KNVELA+++  K+ ++EP N G YV L NI   A+      +VR++M+ER + K 
Sbjct: 493 ACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKT 552

Query: 386 PGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD----QKNSEEH 441
           PG S++++  +VH F+VGD+++ ++ +IY  LD+L   ++       +D      + EE 
Sbjct: 553 PGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEK 612

Query: 442 LNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATR 501
                 HSEKLA+AFGI+N +  + I V KNLRICGDCH  IK +SK+V    +VRD+ R
Sbjct: 613 AESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLR 672

Query: 502 FHHFKSGFCSCKDYW 516
           FHHFK+G CSCKD W
Sbjct: 673 FHHFKNGNCSCKDLW 687



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 103/422 (24%), Positives = 195/422 (46%), Gaps = 40/422 (9%)

Query: 4   ESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL 63
           ++I     T C + LIS    + L +EA+ ++  ++E+G++ +    L     C   G  
Sbjct: 36  DNIPQPDPTTC-STLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGDA 94

Query: 64  WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGY 123
                 H    + G+  D  VGN L+  Y KC  V+  R++FD +  + +++W ++ S Y
Sbjct: 95  LRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCY 154

Query: 124 AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP 183
            + G     ++++REM   GV P+ +T   +L +CA L     G E+      +G   N 
Sbjct: 155 VKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNL 214

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
           F+ +AL+++YA+C ++++AR +FD MP + VVSW  ++  Y  +   E    LF +M + 
Sbjct: 215 FVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRD 274

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP-------------------- 283
           G+R D   + +V+  C   G +++ +E F  M+ K G +P                    
Sbjct: 275 GVRADEATWNAVIGGCMENGRSEEAVEMFRKMQ-KMGFKPNEITISSILPACSFSENLRM 333

Query: 284 GPE-------HY--------TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACK 328
           G E       H+        T ++ +  + G LN +  + + M+   D   W  ++ A  
Sbjct: 334 GKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFD-MMRRKDVVAWNTMIIANA 392

Query: 329 IHKNVELAELAFGKVI--KLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDP 386
           +H N + A   F K++  +++P +  +  +LS         +G+     M R+  ++ D 
Sbjct: 393 MHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDA 452

Query: 387 GY 388
            +
Sbjct: 453 NH 454



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 117/247 (47%), Gaps = 2/247 (0%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L+ + +  G  +  R+LFD +P+    T + +IS    +GL+   +++Y  ++  G+ PD
Sbjct: 18  LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 77

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
              F+    +CA  G      EV       G  S+ F+ NALI+ Y +C  ++ AR +FD
Sbjct: 78  MPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFD 137

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            +  + VVSWT++   Y   G     + +F EM  SG++P+     S+L AC+       
Sbjct: 138 DLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKS 197

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           G E  +G   ++G+       + +V L  +   + EA  ++  ++   D   W  +L A 
Sbjct: 198 GKE-IHGFAVRHGMVVNLFVCSALVSLYAKCLSVREA-RMVFDLMPHRDVVSWNGVLTAY 255

Query: 328 KIHKNVE 334
             +K  E
Sbjct: 256 FKNKEYE 262


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 195/512 (38%), Positives = 289/512 (56%), Gaps = 10/512 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEI--NSVTMLCLLPICVDPGYLWLGMCCH 70
           + + ++I G   +    EA+ LF +M   GVE+   S T  C++  C +   L+ G+  H
Sbjct: 167 ISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIH 226

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
               K G   D  +   L+T Y  C  ++   ++F       ++ W A+++GY  N    
Sbjct: 227 AHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHE 286

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             L+++ EM   GV P+  +F   L+SC  L A   G E+       G  ++ F+ N+LI
Sbjct: 287 DALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLI 346

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
            MY RCGNL     IF  + +K +VSW ++I G   HG G  A+  F++M++S + PD  
Sbjct: 347 VMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEI 406

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            F  +LSACSH+G++ KG   F         +   +HY CMVD+LGR+G+L EA ELI +
Sbjct: 407 TFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRN 466

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M V+ +  VW  LL AC +H  +E+AE A   +I LEP  +  YVLLSN+Y+ A     +
Sbjct: 467 MPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDV 526

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
            R+R  M++R + K PG S++ +KG  + F+ GDR+H  +  IY+ L+ L   ++E    
Sbjct: 527 SRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSDRIYQKLEWLGGKLKELGYV 586

Query: 431 KRSDQKNSEEHLNDTE------VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
              DQ+ +   + D +       HSE+LAI FG+I+T  G+ I VMKNLR+CGDCH  IK
Sbjct: 587 --PDQRFALHDVEDEQKEVMLSYHSERLAIGFGLISTVEGSTITVMKNLRVCGDCHSAIK 644

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           L++KIV R+ IVRD+TRFHHF  G CSC DYW
Sbjct: 645 LIAKIVRRKIIVRDSTRFHHFMDGRCSCGDYW 676



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 178/355 (50%), Gaps = 24/355 (6%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++I G    + ++ A  LF +M E+ V ++  TM+         G+L  G     I
Sbjct: 74  VSWNSMIKGCFDCADLTMARKLFDEMPERSV-VSWTTMI--------NGFLQFGK----I 120

Query: 73  CVKFGLDL-----DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
            V  GL       D +  N ++  Y   G V+ G +LF ++P + +I+W +MI G  Q+G
Sbjct: 121 EVAEGLFYKMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHG 180

Query: 128 LATHVLELYREMKSLG--VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
            +   L L+R+M   G  V P + T+  V+++CA+  A   G+++   +   G+  + ++
Sbjct: 181 RSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYI 240

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
           + ALI  YA C  ++ +  +F G     VV WTA++ GYG++   E A+++F EM++ G+
Sbjct: 241 SAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGV 300

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
            P+ ++F S L++C      D G E  +    K GL+        ++ +  R G LN+ +
Sbjct: 301 LPNQSSFTSALNSCCGLEALDWGRE-IHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGV 359

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
            +I   + + +   W +++  C  H     A   F ++++  +EP    +  LLS
Sbjct: 360 -VIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLS 413



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 125/264 (47%), Gaps = 20/264 (7%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           ++T Y +    D+  +LF ++P K +++WN+MI G       T   +L+ EM    V   
Sbjct: 48  MITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDCADLTMARKLFDEMPERSV--- 104

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN----NALINMYARCGNLKKAR 203
            V++  +++     G     +EV + +    F   PF +    N++I  Y   G ++   
Sbjct: 105 -VSWTTMINGFLQFGK----IEVAEGL----FYKMPFRDIAAWNSMIYGYCCNGRVEDGL 155

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG--IRPDGTAFVSVLSACSH 261
            +F  MP + V+SWT++IGG   HG  E A+ LF +M+  G  ++P  + +  V++AC++
Sbjct: 156 RLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACAN 215

Query: 262 AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWG 321
           A    +G++  +    K G          ++       Q+ ++L +    L   +  +W 
Sbjct: 216 ASALYQGVQ-IHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKL-HMNVVIWT 273

Query: 322 ALLGACKIHKNVELAELAFGKVIK 345
           AL+    ++   E A   FG++++
Sbjct: 274 ALVTGYGLNCKHEDALKVFGEMMR 297


>gi|357126882|ref|XP_003565116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Brachypodium distachyon]
          Length = 796

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 195/514 (37%), Positives = 297/514 (57%), Gaps = 11/514 (2%)

Query: 13  VCYNALISGY------VLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLG 66
           V +NA+I+G       V   +V EA+SL+ +++ +G+E    T   ++  C   G +  G
Sbjct: 284 VVFNAMIAGLCRDEAAVHKEVVREALSLYSELQSRGMEPTEFTFSSVIRACNLAGDIEFG 343

Query: 67  MCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQN 126
              H   +K     D  +G+ L+ +Y     ++ G + F  VP++ ++TW AMISG  QN
Sbjct: 344 KQIHGQVLKHCFQGDDFIGSALIDLYFNSACMEDGFRCFRSVPKQDVVTWTAMISGCVQN 403

Query: 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
            L    L L+ E+  +G+ PD  T   V+++CA L     G +++     +GF     + 
Sbjct: 404 ELFERALALFHELLGVGLKPDPFTISSVMNACASLAVVRTGEQMQCFATKSGFDRFTAMG 463

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           N+ I+MYAR GN++ A   F  M    VVSW+AII  +  HG    A+Q F+EM+ + + 
Sbjct: 464 NSCIHMYARSGNVEAAIQRFQEMESHDVVSWSAIISSHAQHGCARQALQFFNEMVGAKVV 523

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
           P+   F+ VL+ACSH GL D+GL Y+  MK +YGL P  +H TC+VDLLGRAG+L +A  
Sbjct: 524 PNEITFLGVLTACSHGGLVDEGLRYYEIMKMEYGLCPTVKHCTCVVDLLGRAGRLADAEA 583

Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366
            I   +   +  VW +LLG+C+IH+++E  +L   ++++L+P ++G YV L N+Y +A  
Sbjct: 584 FIRDSIFHDEPVVWQSLLGSCRIHRDMERGQLVADRIMELQPASSGCYVNLYNMYLDAGE 643

Query: 367 LDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY----RMLDKLEN 422
           L    ++R +M+ER +KK+PG S++EL+  +H F+ GD++H +   IY     ML K++ 
Sbjct: 644 LSLGSKIRDLMKERGVKKEPGLSWIELRSGIHSFVAGDKSHPECNAIYTKLAEMLSKIDK 703

Query: 423 LVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLF 482
           L           +    E  N    HSEKLA+A GII+      I VMKNLR+C DCH  
Sbjct: 704 LTTTDTSCIEWVETTGREQ-NWMNCHSEKLAVALGIIHLPQSAPIRVMKNLRVCRDCHST 762

Query: 483 IKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +KL+SK   R+ I+RD  RFHHF+ G CSC DYW
Sbjct: 763 MKLISKSECREIILRDVIRFHHFRDGSCSCGDYW 796



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 145/293 (49%), Gaps = 12/293 (4%)

Query: 86  NCLMTMYVKCGSVD--YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY-REMKSL 142
           N L+  Y + G+ D    R+L D++P +  +++N +I  Y++ G     LE +    ++ 
Sbjct: 49  NTLLAAYCRLGAGDTHQARRLLDEMPRRNAVSFNLLIDAYSRAGQTEESLETFLHAHRAA 108

Query: 143 GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202
            V  D  T+   L++C+  G    G  V       G     F++N+L++MYARCG++ +A
Sbjct: 109 EVKADRFTYAAALAACSRAGRLKEGKVVHALAVLEGLAEGVFVSNSLVSMYARCGDMGEA 168

Query: 203 RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262
           R +FD    +  VSW +++ GY   G  E  +++F  M +  +  +  A  SV+  CS  
Sbjct: 169 RRVFDVTEERDDVSWNSLVSGYLRVGAHEEMLRVFALMRRCAMGLNSFALGSVIKCCSGG 228

Query: 263 GLTDKGL-EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWG 321
             + +G+ E  +G   K GL       + MVD+  + G L+EA+ L +S+L +P+  V+ 
Sbjct: 229 DGSVRGIAEAVHGCVVKAGLDTDLFLASAMVDMYAKRGALSEAVALFKSVL-DPNVVVFN 287

Query: 322 ALL-GACK----IHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDG 369
           A++ G C+    +HK V    L+    ++   M    +   S I   A NL G
Sbjct: 288 AMIAGLCRDEAAVHKEVVREALSLYSELQSRGMEPTEFTFSSVI--RACNLAG 338



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 155/342 (45%), Gaps = 11/342 (3%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLF-GKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
            V +N LI  Y       E++  F    R   V+ +  T    L  C   G L  G   H
Sbjct: 78  AVSFNLLIDAYSRAGQTEESLETFLHAHRAAEVKADRFTYAAALAACSRAGRLKEGKVVH 137

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
            + V  GL     V N L++MY +CG +   R++FD   E+  ++WN+++SGY + G   
Sbjct: 138 ALAVLEGLAEGVFVSNSLVSMYARCGDMGEARRVFDVTEERDDVSWNSLVSGYLRVGAHE 197

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGL--EVEQQIQANGFGSNPFLNNA 188
            +L ++  M+   +  ++     V+  C+       G+   V   +   G  ++ FL +A
Sbjct: 198 EMLRVFALMRRCAMGLNSFALGSVIKCCSGGDGSVRGIAEAVHGCVVKAGLDTDLFLASA 257

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGY---GIHGHGEV---AVQLFDEMLK 242
           +++MYA+ G L +A A+F  +    VV + A+I G        H EV   A+ L+ E+  
Sbjct: 258 MVDMYAKRGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVHKEVVREALSLYSELQS 317

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
            G+ P    F SV+ AC+ AG  + G +  +G   K+  Q      + ++DL   +  + 
Sbjct: 318 RGMEPTEFTFSSVIRACNLAGDIEFG-KQIHGQVLKHCFQGDDFIGSALIDLYFNSACME 376

Query: 303 EALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI 344
           +      S + + D   W A++  C  ++  E A   F +++
Sbjct: 377 DGFRCFRS-VPKQDVVTWTAMISGCVQNELFERALALFHELL 417


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 202/515 (39%), Positives = 296/515 (57%), Gaps = 18/515 (3%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           Y ALI G+V +    EA+ L+ +M  + +  ++  M  +L  C     L  G   H   +
Sbjct: 105 YTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRAL 164

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE----KGLITWNAMISGYAQNGLAT 130
           K G   +  V   +M +Y KCG +   R++F+++PE    K  + W AMI G+ +N    
Sbjct: 165 KLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETN 224

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             LE +R M+   V P+  T V VLS+C+ LGA  +G  V   ++      N F+ NALI
Sbjct: 225 RALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALI 284

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           NMY+RCG++ +A+ +FD M  + V+++  +I G  ++G    A++LF  M+   +RP   
Sbjct: 285 NMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNV 344

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            FV VL+ACSH GL D G E F+ M   Y ++P  EHY CMVDLLGR G+L EA +LI +
Sbjct: 345 TFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRT 404

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M + PD  + G LL ACK+HKN+EL E    ++      ++G YVLLS++Y+ +      
Sbjct: 405 MKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEA 464

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
            +VR  M+E  ++K+PG S +E+   +H F++GD  H Q   IY   +KLE L +     
Sbjct: 465 AQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIY---EKLEELNRLLRLE 521

Query: 431 KRSDQKNSEEHLNDTE---------VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHL 481
               +K  E  L D E         +HSE+LAI +G+I+T P T I VMKNLR+C DCH 
Sbjct: 522 GYHPEK--EVVLQDIEDGEKEWALAMHSERLAICYGLISTEPCTMIRVMKNLRVCYDCHS 579

Query: 482 FIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            IKL++KI  R+ +VRD  RFH+F++G CSC DYW
Sbjct: 580 AIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 614



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 144/277 (51%), Gaps = 6/277 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           TVC+ A+I G+V N   + A+  F  M+ + V  N  T++C+L  C   G L +G   H 
Sbjct: 207 TVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHS 266

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              KF ++L+  VGN L+ MY +CGS+D  + +FD++ ++ +IT+N MISG + NG +  
Sbjct: 267 YMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQ 326

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--AL 189
            +EL+R M    + P  VTFVGVL++C+H G    G E+   + A  +   P + +   +
Sbjct: 327 AIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSM-ARDYRVEPQIEHYGCM 385

Query: 190 INMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           +++  R G L++A  +   M      +    ++    +H + E+  Q+  E+   G    
Sbjct: 386 VDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADS 445

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
           GT +V +    + +G   +  +    MK + G+Q  P
Sbjct: 446 GT-YVLLSHVYASSGKWKEAAQVRAKMK-EAGMQKEP 480



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 124/273 (45%), Gaps = 12/273 (4%)

Query: 94  KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVG 153
           KC ++DY  ++F       +  + A+I G+  +G     ++LY  M    + PD      
Sbjct: 83  KCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMAS 142

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR-- 211
           +L +C    A   G EV  +    GF SN  +   ++ +Y +CG L  AR +F+ MP   
Sbjct: 143 ILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDV 202

Query: 212 --KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
             K  V WTA+I G+  +     A++ F  M    +RP+    V VLSACS  G  + G 
Sbjct: 203 VAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIG- 261

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC-- 327
            + +    K+ ++        ++++  R G ++EA  + + M  + D   +  ++     
Sbjct: 262 RWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEM-KDRDVITYNTMISGLSM 320

Query: 328 --KIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
             K  + +EL  +  G+  +L P N  +  +L+
Sbjct: 321 NGKSRQAIELFRVMVGR--RLRPTNVTFVGVLN 351



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 11/191 (5%)

Query: 137 REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196
           + +KSL    D    + +L    H+      L +  Q+  NG   +PF+   L+   ++C
Sbjct: 32  KSLKSL----DQKQIISLLQRSRHINQ---VLPIHAQLIRNGHSQDPFMVFELLRSCSKC 84

Query: 197 GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL 256
             +  A  IF       V  +TA+I G+   G+   A+QL+  ML   I PD     S+L
Sbjct: 85  HAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASIL 144

Query: 257 SACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM---LV 313
            AC       +G E  +    K G          +++L G+ G+L +A  + E M   +V
Sbjct: 145 KACGSQLALREGRE-VHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVV 203

Query: 314 EPDGAVWGALL 324
             D   W A++
Sbjct: 204 AKDTVCWTAMI 214


>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 615

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 200/529 (37%), Positives = 299/529 (56%), Gaps = 16/529 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLV-------SEAVSLFGKMREQGVEINSVTMLCL 53
           VFD  I      V YN L+ GY   S          EA  +F +M E+GV  ++ T + L
Sbjct: 90  VFDR-IPGPGDVVWYNTLLRGYARCSAAGGARPPAEEAARVFVRMLEEGVAPDTYTFVSL 148

Query: 54  LPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL 113
           L  C        G   H + VK G      V   L+ MY +CG     R +F +V  + +
Sbjct: 149 LKACAAARAGEEGRQAHGVAVKVGAAEHEYVLPTLINMYAECGDARAARTMFGRVDGECV 208

Query: 114 ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQ 173
           +++NAMI+   ++      L L+REM++ G+   +VT + VLS+CA LGA  +G  + + 
Sbjct: 209 VSYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSACALLGALELGRWIHEY 268

Query: 174 IQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVA 233
           ++     S   +N ALI+MY +CG+L+ A ++F GM  +   +W+ +I  Y  H +G  A
Sbjct: 269 VRKVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGMESRDRQAWSVMIVAYANHSYGREA 328

Query: 234 VQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293
           + LF+EM K GI+PD   F+ VL ACSH+GL  +GL+YF  M+ ++GL PG +HY C+ D
Sbjct: 329 ISLFEEMKKQGIKPDDVTFLGVLYACSHSGLVSEGLQYFDSMR-EFGLVPGIKHYGCVAD 387

Query: 294 LLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGY 353
           LL R+GQL+ A E I+ + ++P   +W  LL AC    + +L +  F ++++L+  + G 
Sbjct: 388 LLARSGQLDRAYEFIDELPIKPTAILWRTLLSACGSRGDADLGKQVFERILELDDSHGGD 447

Query: 354 YVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEI 413
           YV+ SN+ +     + + RVR +M E+ + K PG S +E+  RVH F  GD  H ++++ 
Sbjct: 448 YVIFSNLCANTGRWEEMNRVRKLMNEKGVVKVPGCSSIEVDNRVHEFFAGDGRHPKSLDA 507

Query: 414 YRMLD------KLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEI 467
            RM+D      KL   V         +    EE       HSEKLAI+FG++NTSPGT +
Sbjct: 508 RRMVDGVIEQLKLAGYVPNTSHVFHVEM-GEEEKAVSLRYHSEKLAISFGLLNTSPGTTL 566

Query: 468 VVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            V+KNLR+C DCH   KLVS + +R+ I+RD  RFHHF+ G CSC DYW
Sbjct: 567 RVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 615



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 123/274 (44%), Gaps = 15/274 (5%)

Query: 70  HCICVKFGLDLDFSVGNCLMTM-----YVKCGSVDYGRKLFDQVPEKGLITW-NAMISGY 123
           H   VK GL    +    L+T+       K   + Y R++FD++P  G + W N ++ GY
Sbjct: 51  HAAAVKSGLQAHPAFVTRLLTLCTDQGAAKPAQLSYARQVFDRIPGPGDVVWYNTLLRGY 110

Query: 124 AQ-------NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
           A+          A     ++  M   GV PD  TFV +L +CA   A   G +       
Sbjct: 111 ARCSAAGGARPPAEEAARVFVRMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHGVAVK 170

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
            G   + ++   LINMYA CG+ + AR +F  +  + VVS+ A+I           A+ L
Sbjct: 171 VGAAEHEYVLPTLINMYAECGDARAARTMFGRVDGECVVSYNAMITAAVRSSRPGEALVL 230

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           F EM   G++      +SVLSAC+  G  + G  + +    K  L    +  T ++D+ G
Sbjct: 231 FREMQAKGLKLTSVTLISVLSACALLGALELG-RWIHEYVRKVQLDSLVKVNTALIDMYG 289

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           + G L +A+ + + M    D   W  ++ A   H
Sbjct: 290 KCGSLEDAISVFQGMESR-DRQAWSVMIVAYANH 322


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 195/512 (38%), Positives = 289/512 (56%), Gaps = 10/512 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEI--NSVTMLCLLPICVDPGYLWLGMCCH 70
           + + ++I G   +    EA+ LF +M   GVE+   S T  C++  C +   L+ G+  H
Sbjct: 151 ISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIH 210

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
               K G   D  +   L+T Y  C  ++   ++F       ++ W A+++GY  N    
Sbjct: 211 AHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHE 270

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             L+++ EM   GV P+  +F   L+SC  L A   G E+       G  ++ F+ N+LI
Sbjct: 271 DALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLI 330

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
            MY RCGNL     IF  + +K +VSW ++I G   HG G  A+  F++M++S + PD  
Sbjct: 331 VMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEI 390

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            F  +LSACSH+G++ KG   F         +   +HY CMVD+LGR+G+L EA ELI +
Sbjct: 391 TFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRN 450

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M V+ +  VW  LL AC +H  +E+AE A   +I LEP  +  YVLLSN+Y+ A     +
Sbjct: 451 MPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDV 510

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
            R+R  M++R + K PG S++ +KG  + F+ GDR+H  +  IY+ L+ L   ++E    
Sbjct: 511 SRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSDRIYQKLEWLGGKLKELGYV 570

Query: 431 KRSDQKNSEEHLNDTE------VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
              DQ+ +   + D +       HSE+LAI FG+I+T  G+ I VMKNLR+CGDCH  IK
Sbjct: 571 --PDQRFALHDVEDEQKEVMLSYHSERLAIGFGLISTVEGSTITVMKNLRVCGDCHSAIK 628

Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           L++KIV R+ IVRD+TRFHHF  G CSC DYW
Sbjct: 629 LIAKIVRRKIIVRDSTRFHHFMDGRCSCGDYW 660



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 178/355 (50%), Gaps = 24/355 (6%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N++I G    + ++ A  LF +M E+ V ++  TM+         G+L  G     I
Sbjct: 58  VSWNSMIKGCFDCADLTMARKLFDEMPERSV-VSWTTMI--------NGFLQFGK----I 104

Query: 73  CVKFGLDL-----DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
            V  GL       D +  N ++  Y   G V+ G +LF ++P + +I+W +MI G  Q+G
Sbjct: 105 EVAEGLFYKMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHG 164

Query: 128 LATHVLELYREMKSLG--VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
            +   L L+R+M   G  V P + T+  V+++CA+  A   G+++   +   G+  + ++
Sbjct: 165 RSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYI 224

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
           + ALI  YA C  ++ +  +F G     VV WTA++ GYG++   E A+++F EM++ G+
Sbjct: 225 SAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGV 284

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
            P+ ++F S L++C      D G E  +    K GL+        ++ +  R G LN+ +
Sbjct: 285 LPNQSSFTSALNSCCGLEALDWGRE-IHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGV 343

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
            +I   + + +   W +++  C  H     A   F ++++  +EP    +  LLS
Sbjct: 344 -VIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLS 397



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 125/264 (47%), Gaps = 20/264 (7%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           ++T Y +    D+  +LF ++P K +++WN+MI G       T   +L+ EM    V   
Sbjct: 32  MITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDCADLTMARKLFDEMPERSV--- 88

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN----NALINMYARCGNLKKAR 203
            V++  +++     G     +EV + +    F   PF +    N++I  Y   G ++   
Sbjct: 89  -VSWTTMINGFLQFGK----IEVAEGL----FYKMPFRDIAAWNSMIYGYCCNGRVEDGL 139

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG--IRPDGTAFVSVLSACSH 261
            +F  MP + V+SWT++IGG   HG  E A+ LF +M+  G  ++P  + +  V++AC++
Sbjct: 140 RLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACAN 199

Query: 262 AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWG 321
           A    +G++  +    K G          ++       Q+ ++L +    L   +  +W 
Sbjct: 200 ASALYQGVQ-IHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKL-HMNVVIWT 257

Query: 322 ALLGACKIHKNVELAELAFGKVIK 345
           AL+    ++   E A   FG++++
Sbjct: 258 ALVTGYGLNCKHEDALKVFGEMMR 281


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 190/541 (35%), Positives = 305/541 (56%), Gaps = 36/541 (6%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            + +  LISGY      +EAV  F  M   G+E + VT++ LL  C     L  G   H 
Sbjct: 202 VISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHK 261

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGS--------------------------------VD 99
           +  + G+ +   +   L+ MY KCG                                 VD
Sbjct: 262 LVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVD 321

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
             R LFDQ+ ++ L+T+N++I+GY   G     L L+ +M+   +  D  T V +L++CA
Sbjct: 322 VARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACA 381

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
            LGA   G  +   I+      + +L  AL++MY +CG +++A  +F  M  + V +W+A
Sbjct: 382 SLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSA 441

Query: 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279
           +I G   +G G+ A++ F  M   G +P+   ++++L+ACSH+ L D+G  YF  M+  +
Sbjct: 442 MIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLH 501

Query: 280 GLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELA 339
            ++P  EHY CM+DLLGR+G L+EA++L+ +M ++P+  +W ++L AC++HK+  LA  A
Sbjct: 502 NIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWASILSACRVHKDANLARNA 561

Query: 340 FGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHL 399
              ++KLEP     YV L NIY ++R  +   ++R +M ER +KK  GYS + + G+VH 
Sbjct: 562 AEHLLKLEPDEDAVYVQLYNIYIDSRQWEDASQIRRLMEERGVKKAAGYSSITVAGQVHK 621

Query: 400 FMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQ----KNSEEHLNDTEVHSEKLAIA 455
           F+V DR H Q +EI  M++++   ++    +  + Q     + EE  +    HSEK+AIA
Sbjct: 622 FIVCDRTHPQIMEITAMMEEITRRLKSVGYSPITSQITVDVDEEEKEHALLAHSEKIAIA 681

Query: 456 FGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDY 515
           FG+I+ +P   + ++KNLR+C DCH  IKL+S+I +R+ IVRD +RFHHF+ G CSC D+
Sbjct: 682 FGLISLAPNLPLHIIKNLRVCEDCHSAIKLISRIWNREIIVRDRSRFHHFRDGTCSCNDF 741

Query: 516 W 516
           W
Sbjct: 742 W 742



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 112/380 (29%), Positives = 169/380 (44%), Gaps = 50/380 (13%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD- 59
           +FD    ST L     AL + +  +S     + L+ +MR  GV  ++ T   L   C   
Sbjct: 59  LFDRMPCSTFLF--DTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARG 116

Query: 60  PGYLWLGMCCHCICVKFGLDLDFS-VGNCLMTMYVKCGSVDYGRKLFDQVPEK------- 111
             ++ L    H  C +  L      V N ++ MYV+ G     R+ FD +P K       
Sbjct: 117 RAHVLLCQMLHAACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTT 176

Query: 112 ------------------------GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
                                    +I+W  +ISGY++ G A   ++ +  M S G+ PD
Sbjct: 177 VISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPD 236

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
            VT +G+LS+CA L     G  + + +   G   +  L  ALI+MYA+CG++ +A  +FD
Sbjct: 237 EVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFD 296

Query: 208 GMPR-KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD 266
            + R +   SW A+I GY   GH +VA  LFD+M       D   F S+++   H G   
Sbjct: 297 ALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDR----DLVTFNSLITGYIHGGRLR 352

Query: 267 KGLEYFYGMKNKYGLQPGPEHYTCMVDLL---GRAGQLNEALEL---IESMLVEPDGAVW 320
           + L  F  M+ ++ L+   +++T MV LL      G L +   L   IE  LVE D  + 
Sbjct: 353 EALLLFMQMR-RHDLR--ADNFT-MVSLLTACASLGALPQGRALHACIEQRLVEVDIYLG 408

Query: 321 GALLGACKIHKNVELAELAF 340
            ALL        VE A L F
Sbjct: 409 TALLDMYLKCGRVEEASLVF 428



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 146/363 (40%), Gaps = 59/363 (16%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGS------VDYGRKLFDQVPEKGLITWNAMISGY 123
           H + V  G  L     + L+   V C +      + Y   LFD++P    +   A+ + +
Sbjct: 19  HAVLVASGRLLHPPSASHLLNSLVNCFTPTDPLHLRYALCLFDRMPCSTFLFDTALRACF 78

Query: 124 AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF---- 179
             +      L LYR M+  GVC DA TF  +   CA   AH +   + Q + A  F    
Sbjct: 79  RASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRAHVL---LCQMLHAACFRTML 135

Query: 180 -GSNPFLNNALINMYARCGNLKKARAIFDGMPRK-------------------------- 212
             + P ++N +I+MY   G    AR  FD +P K                          
Sbjct: 136 PSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLR 195

Query: 213 -----TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD- 266
                 V+SWT +I GY   G    AV  F+ ML  GI PD    + +LSAC  A L D 
Sbjct: 196 HSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSAC--AQLKDL 253

Query: 267 ---KGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGAL 323
              + L    G K   G+    +    ++D+  + G +  A E+ +++        W A+
Sbjct: 254 VFGRSLHKLVGEK---GMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAM 310

Query: 324 L-GACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRL 382
           + G CK+  +V++A   F    ++E  +   +  L   Y     L   + + M MR   L
Sbjct: 311 IDGYCKL-GHVDVARYLFD---QMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDL 366

Query: 383 KKD 385
           + D
Sbjct: 367 RAD 369


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 199/515 (38%), Positives = 293/515 (56%), Gaps = 19/515 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  +ISGY       EA+ LF KM   G   N  T+  +L  C  P  ++ G   H +
Sbjct: 77  VSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSL 136

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK   +    VG+ L+ MY K  ++   R++FD +PE+ +++  A+ISGYAQ GL    
Sbjct: 137 LVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEA 196

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+L+R++ S G+  + VTF  ++++ + L +   G +V   I          L N+LI+M
Sbjct: 197 LDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDM 256

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++CG L  +R +FD M  ++VVSW A++ GYG HG G   + LF ++ K  ++PD    
Sbjct: 257 YSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTL 315

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           ++VLS CSH GL D+GL+ F  +  +        HY C++DLLGR+G+L +AL LIE+M 
Sbjct: 316 LAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMP 375

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            E   ++WG+LLGAC++H NV + EL   K++++EP N G YV+LSNIY+ A     + +
Sbjct: 376 FESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFK 435

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD------KLENLVQE 426
           VR +M E+ + K+PG S++ L   +H F   +R H    +I   +       K    V +
Sbjct: 436 VRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPD 495

Query: 427 -----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHL 481
                HD     D +  E  L     HSEKLAI FG++NT PG  I VMKNLRIC DCH 
Sbjct: 496 LSCVLHD----VDDEQKERMLLG---HSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHN 548

Query: 482 FIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           F K VSK+ +R+  +RD  RFH    G C+C DYW
Sbjct: 549 FAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 583



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 145/279 (51%), Gaps = 24/279 (8%)

Query: 57  CVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
           C++   LW G   H   +         +G  L+TMYV+CG++D  R + D++PE+ +++W
Sbjct: 20  CIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSW 79

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
             MISGY+Q       L+L+ +M   G  P+  T   VL+SC+   +   G +V   +  
Sbjct: 80  TTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVK 139

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
             F S+ F+ ++L++MYA+  N+++AR +FD +P + VVS TAII GY   G  E A+ L
Sbjct: 140 TNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDL 199

Query: 237 FDEMLKSGIRPDGTAFVSVLSACS-----------HAGLTDKGLEYFYGMKNKYGLQPGP 285
           F ++   G++ +   F ++++A S           HA +  K L +F  ++N        
Sbjct: 200 FRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNS------- 252

Query: 286 EHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
                ++D+  + G+L  +  + ++ML E     W A+L
Sbjct: 253 -----LIDMYSKCGKLLYSRRVFDNML-ERSVVSWNAML 285



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 58/110 (52%)

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
           +   +++C    A   G +V  ++    +    FL   L+ MY RCG L  AR + D MP
Sbjct: 13  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMP 72

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
            ++VVSWT +I GY        A+ LF +ML++G  P+     +VL++CS
Sbjct: 73  ERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCS 122


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 192/524 (36%), Positives = 296/524 (56%), Gaps = 12/524 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+  +     V + A+I GY  N  +  AV  F  M+ +G+      + C   +    
Sbjct: 179 VFDQMPQKD--AVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFC--SVLSAS 234

Query: 61  GYL---WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK-GLITW 116
           G L   WL    HC   K G +L+ +V N L+ MY K   V+   ++    P    +++ 
Sbjct: 235 GGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSG 294

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
            +MI GY +       L +Y E++  GV P+  TF  ++  CA       G ++  Q+  
Sbjct: 295 TSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIK 354

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
                + F+ + L++MY +CG +  +  +F+ +  +T ++W A+I  +  HGHG  A+Q 
Sbjct: 355 TDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQA 414

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           FD M+ SGIRP+  AFVS+L+ACSHAGL D+GL+YFY MK  +G++P  EHY+C++D  G
Sbjct: 415 FDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYG 474

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356
           RAG+L+EA + I  M ++P+   W +LLGAC++  + EL E+A   ++KLEP NTG +V 
Sbjct: 475 RAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVS 534

Query: 357 LSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRM 416
           LS IY+     + +  VR +MR+ R+KK PG+S+V+   + H+F   D +H Q  +IY  
Sbjct: 535 LSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEK 594

Query: 417 LDKLENLVQEHDGTKRSD--QKNSEEHLNDT--EVHSEKLAIAFGIINTSPGTEIVVMKN 472
           L++L   ++E      +     N E+   +     HSE++A+AF +I+      I+V KN
Sbjct: 595 LEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSERIAVAFALISMPATKPIIVKKN 654

Query: 473 LRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           LRIC DCH   K + K+  R  IVRD +RFHHF +G CSC DYW
Sbjct: 655 LRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCSCGDYW 698



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 143/317 (45%), Gaps = 24/317 (7%)

Query: 46  NSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFS-VGNCLMTMYVKCGSVDYGRKL 104
            +V +  LL  C   G L  G   H   V  G     + + N L+TMY  C  +    +L
Sbjct: 19  TTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRL 78

Query: 105 FDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA- 163
           F  +P +  ++W  ++SG +QN +    L  +  M+  GV P          + A LGA 
Sbjct: 79  FAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAP 138

Query: 164 ------HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
                 H VG+ +       GF +  F+ + L +MY++CG L +A  +FD MP+K  V+W
Sbjct: 139 LPGAQLHCVGVRL-------GFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAW 191

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSG-IRPDGTAFVSVLSACSHAGLTDKGL-EYFYGM 275
           TA+I GY  +G  E AV  F +M + G +  D   F SVLSA    GL D  L +  +  
Sbjct: 192 TAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSAS--GGLKDGWLSKSIHCC 249

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVEL 335
             K G +        ++D+  ++  +  A  +++   ++P G  W  + G   I   +E 
Sbjct: 250 VTKAGFELEVAVRNALIDMYAKSMDVESASRVLK---IDPGG--WNVVSGTSMIDGYIET 304

Query: 336 AELAFGKVIKLEPMNTG 352
             +    VI +E    G
Sbjct: 305 DCVEEALVIYVELRRQG 321


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 187/510 (36%), Positives = 293/510 (57%), Gaps = 8/510 (1%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
            + +NAL+SG+  N      + +F +M  +G   N  T + +L  C     + LG   H  
Sbjct: 498  ISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQ 557

Query: 73   CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             VK  LD +  VG  L+ MY K   ++    +F+++ ++ L  W  +++GYAQ+G     
Sbjct: 558  IVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKA 617

Query: 133  LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            ++ + +M+  GV P+  T    LS C+ +     G ++       G   + F+ +AL++M
Sbjct: 618  VKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDM 677

Query: 193  YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
            YA+CG ++ A  +FDG+  +  VSW  II GY  HG G  A++ F+ ML  G  PD   F
Sbjct: 678  YAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTF 737

Query: 253  VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            + VLSACSH GL ++G ++F  +   YG+ P  EHY CMVD+LGRAG+ +E    IE M 
Sbjct: 738  IGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMK 797

Query: 313  VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            +  +  +W  +LGACK+H N+E  E A  K+ +LEP     Y+LLSN+++     D +  
Sbjct: 798  LTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTN 857

Query: 373  VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
            VR +M  R +KK+PG S+VE+ G+VH+F+  D +H +  EI+  L  L   +     T  
Sbjct: 858  VRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPN 917

Query: 433  SDQKNSEEHLNDTE------VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
            +D  +   +++D E       HSE+LA+AF +++TS    I + KNLRICGDCH F+K +
Sbjct: 918  TD--HVLHNVSDREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSI 975

Query: 487  SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            S+I +++ +VRD   FHHFK+G CSC+++W
Sbjct: 976  SEITNQELVVRDINCFHHFKNGSCSCQNFW 1005



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 100/312 (32%), Positives = 162/312 (51%), Gaps = 2/312 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V ++A+I+         EA  +F +MR  GV  N  T+  L+    D G L+ G   H  
Sbjct: 397 VSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHAC 456

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K+G + D +V N L+TMY+K GSV  G ++F+    + LI+WNA++SG+  N      
Sbjct: 457 VCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTG 516

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L ++ +M + G  P+  TF+ +L SC+ L    +G +V  QI  N    N F+  AL++M
Sbjct: 517 LRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDM 576

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+   L+ A  IF+ + ++ + +WT I+ GY   G GE AV+ F +M + G++P+    
Sbjct: 577 YAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTL 636

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S LS CS     D G +  + M  K G        + +VD+  + G + +A E++   L
Sbjct: 637 ASSLSGCSRIATLDSGRQ-LHSMAIKAGQSGDMFVASALVDMYAKCGCVEDA-EVVFDGL 694

Query: 313 VEPDGAVWGALL 324
           V  D   W  ++
Sbjct: 695 VSRDTVSWNTII 706



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 156/314 (49%), Gaps = 2/314 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +NAL++G+       + ++LF +M    +  +  T+  +L  C + G L  G   H 
Sbjct: 295 AVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHS 354

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + ++ G +LD  +  CL+ MY KCG      K+F ++ +  +++W+A+I+   Q G +  
Sbjct: 355 LAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSRE 414

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
             E+++ M+  GV P+  T   ++S+   LG    G  +   +   GF  +  + NAL+ 
Sbjct: 415 AAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVT 474

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY + G+++    +F+    + ++SW A++ G+  +   +  +++F++ML  G  P+   
Sbjct: 475 MYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYT 534

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+S+L +CS     D G +  +    K  L       T +VD+  +   L +A E I + 
Sbjct: 535 FISILRSCSSLSDVDLG-KQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDA-ETIFNR 592

Query: 312 LVEPDGAVWGALLG 325
           L++ D   W  ++ 
Sbjct: 593 LIKRDLFAWTVIVA 606



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 139/272 (51%), Gaps = 2/272 (0%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           +L  C   G L  G   H   +K G++ D  + N L+ +Y KCGS +Y  K+F ++PE+ 
Sbjct: 134 MLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERD 193

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
           +++W A+I+G+   G  +  + L+ EM+  GV  +  T+   L +C+       G +V  
Sbjct: 194 VVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHA 253

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
           +    G  S+ F+ +AL+++YA+CG +  A  +F  MP++  VSW A++ G+   G  E 
Sbjct: 254 EAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEK 313

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
            + LF  M  S I        +VL  C+++G    G +  + +  + G +       C+V
Sbjct: 314 VLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAG-QIVHSLAIRIGCELDEFISCCLV 372

Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
           D+  + G   +AL++    + +PD   W A++
Sbjct: 373 DMYSKCGLAGDALKVF-VRIEDPDVVSWSAII 403



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/350 (28%), Positives = 160/350 (45%), Gaps = 3/350 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + ALI+G+V     S AV+LF +MR +GVE N  T    L  C     L  G   H  
Sbjct: 195 VSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAE 254

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G   D  VG+ L+ +Y KCG +    ++F  +P++  ++WNA+++G+AQ G A  V
Sbjct: 255 AIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKV 314

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+  M    +     T   VL  CA+ G    G  V       G   + F++  L++M
Sbjct: 315 LNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDM 374

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++CG    A  +F  +    VVSW+AII      G    A ++F  M  SG+ P+    
Sbjct: 375 YSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTL 434

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S++SA +  G    G E  +    KYG +        +V +  + G + +   + E+  
Sbjct: 435 ASLVSAATDLGDLYYG-ESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEAT- 492

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362
              D   W ALL     ++  +     F +++  E  N   Y  +S + S
Sbjct: 493 TNRDLISWNALLSGFHDNETCDTGLRIFNQMLA-EGFNPNMYTFISILRS 541



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 64/110 (58%)

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
           + G+L +CA  G  + G  +  Q+  +G   +  L N+L+N+YA+CG+   A  +F  +P
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
            + VVSWTA+I G+   G+G  AV LF EM + G+  +   + + L ACS
Sbjct: 191 ERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACS 240


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 205/519 (39%), Positives = 287/519 (55%), Gaps = 7/519 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE        V +N++I G+V N L   A+ +F ++   G +   V++  +L  C   
Sbjct: 257 VFDEMPHRN--LVSWNSMIVGFVKNKLYGRAIGVFREVLSLGPD--QVSISSVLSACAGL 312

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H   VK GL     V N L+ MY KCG  +   KLF    ++ ++TWN MI
Sbjct: 313 VELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMI 372

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            G  +          ++ M   GV PD  ++  +  + A + A + G  +   +   G  
Sbjct: 373 MGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHV 432

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            N  ++++L+ MY +CG++  A  +F       VV WTA+I  +  HG    A++LF+EM
Sbjct: 433 KNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEM 492

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           L  G+ P+   FVSVLSACSH G  D G +YF  M N + ++PG EHY CMVDLLGR G+
Sbjct: 493 LNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGR 552

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L EA   IESM  EPD  VWGALLGAC  H NVE+      ++ KLEP N G Y+LLSNI
Sbjct: 553 LEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPGNYMLLSNI 612

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y     L+    VR +M    ++K+ G S++++K R  +F   DR+H +T EIY ML KL
Sbjct: 613 YIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKNRTFVFNANDRSHSRTQEIYGMLQKL 672

Query: 421 ENLVQEHDGTKRSD-QKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICG 477
           + L++       +    NS E   +  +  HSEKLA+AFG++   PG+ + + KNLR CG
Sbjct: 673 KELIKRRGYVAETQFATNSVEGSEEQSLWCHSEKLALAFGLLVLPPGSPVRIKKNLRTCG 732

Query: 478 DCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           DCH  +K  S+I  R+ IVRD  RFH F +G CSC DYW
Sbjct: 733 DCHTVMKFASEIFQREIIVRDINRFHRFTNGSCSCMDYW 771



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 164/348 (47%), Gaps = 35/348 (10%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  LI+    ++   +A++ F +MR  G+  N  T   +LP C     L  G   H +
Sbjct: 166 VTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIHAL 225

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K     D  V   L+ MY KCGS+     +FD++P + L++WN+MI G+ +N L    
Sbjct: 226 IHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRA 285

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + ++RE+ SLG  PD V+   VLS+CA L     G +V   I   G     ++ N+L++M
Sbjct: 286 IGVFREVLSLG--PDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDM 343

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CG  + A  +F G   + VV+W  +I G     + E A   F  M++ G+ PD  ++
Sbjct: 344 YCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASY 403

Query: 253 VSVLSA-CSHAGLTDKGLEYFYGMK--------------NKYG-----------LQPGPE 286
            S+  A  S A LT   + + + +K                YG            +   E
Sbjct: 404 SSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKE 463

Query: 287 H----YTCMVDLLGRAGQLNEALELIESMLVE---PDGAVWGALLGAC 327
           H    +T M+ +  + G  NEA++L E ML E   P+   + ++L AC
Sbjct: 464 HNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSAC 511



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 143/291 (49%), Gaps = 10/291 (3%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVP--EKGLITWNAMISGYAQNGLATHVLELYREMKSLG 143
           N L+ +Y KCGS+ +   LF+  P     ++TW  +I+  +++      L  +  M++ G
Sbjct: 136 NTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTG 195

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
           + P+  TF  +L +CAH    S G ++   I  + F ++PF+  AL++MYA+CG++  A 
Sbjct: 196 IYPNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAE 255

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG 263
            +FD MP + +VSW ++I G+  +     A+ +F E+L  G  PD  +  SVLSAC  AG
Sbjct: 256 NVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLG--PDQVSISSVLSAC--AG 311

Query: 264 LTDKGL-EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGA 322
           L +    +  +G   K GL         +VD+  + G   +A +L      + D   W  
Sbjct: 312 LVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGG-GDRDVVTWNV 370

Query: 323 LLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDGIM 371
           ++  C   +N E A   F  +I+  +EP    Y  L     S A    G M
Sbjct: 371 MIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTM 421


>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
          Length = 847

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 192/524 (36%), Positives = 296/524 (56%), Gaps = 12/524 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+  +     V + A+I GY  N  +  AV  F  M+ +G+      + C   +    
Sbjct: 328 VFDQMPQKD--AVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFC--SVLSAS 383

Query: 61  GYL---WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK-GLITW 116
           G L   WL    HC   K G +L+ +V N L+ MY K   V+   ++    P    +++ 
Sbjct: 384 GGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSG 443

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
            +MI GY +       L +Y E++  GV P+  TF  ++  CA       G ++  Q+  
Sbjct: 444 TSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIK 503

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
                + F+ + L++MY +CG +  +  +F+ +  +T ++W A+I  +  HGHG  A+Q 
Sbjct: 504 TDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQA 563

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           FD M+ SGIRP+  AFVS+L+ACSHAGL D+GL+YFY MK  +G++P  EHY+C++D  G
Sbjct: 564 FDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYG 623

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356
           RAG+L+EA + I  M ++P+   W +LLGAC++  + EL E+A   ++KLEP NTG +V 
Sbjct: 624 RAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVS 683

Query: 357 LSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRM 416
           LS IY+     + +  VR +MR+ R+KK PG+S+V+   + H+F   D +H Q  +IY  
Sbjct: 684 LSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEK 743

Query: 417 LDKLENLVQEHDGTKRSD--QKNSEEHLNDT--EVHSEKLAIAFGIINTSPGTEIVVMKN 472
           L++L   ++E      +     N E+   +     HSE++A+AF +I+      I+V KN
Sbjct: 744 LEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSERIAVAFALISMPATKPIIVKKN 803

Query: 473 LRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           LRIC DCH   K + K+  R  IVRD +RFHHF +G CSC DYW
Sbjct: 804 LRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCSCGDYW 847



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 138/310 (44%), Gaps = 11/310 (3%)

Query: 46  NSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFS-VGNCLMTMYVKCGSVDYGRKL 104
            +V +  LL  C   G L  G   H   V  G     + + N L+TMY  C  +    +L
Sbjct: 169 TTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRL 228

Query: 105 FDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAH 164
           F  +P +  ++W  ++SG +QN +    L  +  M+  GV P          + A LGA 
Sbjct: 229 FAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAP 288

Query: 165 SVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGY 224
                        GF +  F+ + L +MY++CG L +A  +FD MP+K  V+WTA+I GY
Sbjct: 289 LRARSCTASASV-GFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGY 347

Query: 225 GIHGHGEVAVQLFDEMLKSG-IRPDGTAFVSVLSACSHAGLTDKGL-EYFYGMKNKYGLQ 282
             +G  E AV  F +M + G +  D   F SVLSA    GL D  L +  +    K G +
Sbjct: 348 AKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSAS--GGLKDGWLSKSIHCCVTKAGFE 405

Query: 283 PGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGK 342
                   ++D+  ++  +  A  +++   ++P G  W  + G   I   +E   +    
Sbjct: 406 LEVAVRNALIDMYAKSMDVESASRVLK---IDPGG--WNVVSGTSMIDGYIETDCVEEAL 460

Query: 343 VIKLEPMNTG 352
           VI +E    G
Sbjct: 461 VIYVELRRQG 470



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 130/345 (37%), Gaps = 53/345 (15%)

Query: 46  NSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFS-VGNCLMTMYVKCGSVDYGRKL 104
            +V +  LL  C   G L  G   H   V  G     + + N L+TMY  C  +    +L
Sbjct: 19  TTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRL 78

Query: 105 FDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCP------------------ 146
           F  +P +  ++W  ++SG +QN +    L  +  M+  GV P                  
Sbjct: 79  FAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHNTLGPKHT 138

Query: 147 ------------------------------DAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
                                           V    +L SC   G    G  +  ++  
Sbjct: 139 LAASHCHSGPTLMVKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRRGRLLHARLVL 198

Query: 177 NG-FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQ 235
           +G   ++ FL N LI MY+ C +L  A  +F  MPR+  VSWT ++ G   +     A+ 
Sbjct: 199 SGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALA 258

Query: 236 LFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295
            F  M ++G+ P  T F    +A + A L               G        + + D+ 
Sbjct: 259 AFAAMRRAGVAP--TRFALSSAARAAAALGAPLRARSCTASASVGFDTELFVASNLADMY 316

Query: 296 GRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
            + G L+EA  + + M  + D   W A++     + ++E A L+F
Sbjct: 317 SKCGLLSEACRVFDQM-PQKDAVAWTAMIDGYAKNGSLEAAVLSF 360



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 86/212 (40%), Gaps = 21/212 (9%)

Query: 146 PDAVTFV---GVLSSCAHLGAHSVGLEVEQQIQANGFGS-NPFLNNALINMYARCGNLKK 201
           P A T V    +L SC   G    G  +  ++  +G  + + FL N LI MY+ C +L  
Sbjct: 15  PAAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLAS 74

Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG----TAFVSVLS 257
           A  +F  MPR+  VSWT ++ G   +     A+  F  M ++G+ P      T F + L 
Sbjct: 75  ALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHNTLG 134

Query: 258 -----ACSHAGLTDKGLEYFYGMKNKYGLQPGPE-----HYTCMVDLLGRAGQLNEALEL 307
                A SH       +  ++G   +    P P      H   ++   GRAG L     L
Sbjct: 135 PKHTLAASHCHSGPTLMVKYWG--QRLWRPPAPAAATTVHLASLLQSCGRAGDLRRG-RL 191

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELA 339
           + + LV    A     L    I      A+LA
Sbjct: 192 LHARLVLSGAAAASTFLANHLITMYSHCADLA 223


>gi|302807997|ref|XP_002985693.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
 gi|300146602|gb|EFJ13271.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
          Length = 706

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 202/530 (38%), Positives = 306/530 (57%), Gaps = 25/530 (4%)

Query: 2   FDESIKS----THL-TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPI 56
            +ES+K+    T L  V +NA+I+ +  +    EA+    KM  +G+   SVT + L+  
Sbjct: 187 LEESVKTFESMTELNAVSWNAMIAAFAEHRRGLEALRTLQKMFLEGIRACSVTYITLMSA 246

Query: 57  CVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
              P  L      H   ++ G D D  V N ++ MY KCG +     +F  + +  +I W
Sbjct: 247 YDQPSQLKSARYIHDCILRTGFDQD--VVNVILNMYGKCGCLQDAEAMFKSMSQPDVIAW 304

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
           N MI+ Y+Q+G  +  L  Y  M+  GV PD  T+V V+ +CA LG   VG +V +++  
Sbjct: 305 NTMIAAYSQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDACATLGDMEVGKQVHRRLGD 364

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
             F     L N+L+NMY +CG L  AR+IFD   + +V +W A+IG Y  H H + A +L
Sbjct: 365 RAFQVTE-LANSLVNMYGKCGILDVARSIFDKTAKGSV-TWNAMIGAYAQHSHEQQAFEL 422

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           F  M   G  P    F+SVLSAC++AGL ++   YF  M+  +G++PG  HY CMV+ LG
Sbjct: 423 FLLMRLDGEEPSYITFMSVLSACANAGLPEEAHSYFVCMQQDHGVRPGGGHYGCMVESLG 482

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356
           +AG+L++A  LI+ M  EPD   W + L  C+ H +++  + A    I+++P  +  YV 
Sbjct: 483 KAGRLSDAEALIQGMPFEPDVLTWTSFLANCRSHGDMKRGKFAAKGAIRIDPEASTGYVA 542

Query: 357 LSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRM 416
           L+ I+++A +     R+R +M +R ++K+ G S ++L   V+ F  GD+++ ++ EI+  
Sbjct: 543 LARIHADAGDFQEASRIRKLMLDRGIRKNAGRSIIKLGTSVYEFTAGDQSNPRSKEIF-- 600

Query: 417 LDKLENLVQEHDGTKRSDQKNSEEHL-NDTE---------VHSEKLAIAFGIINTSPGTE 466
            D+L+ L +E    KR+       H+ +D E          HSE+LAIAFGII+TS GT 
Sbjct: 601 -DELKRLDKE---MKRAGYDPDMTHVAHDVEAGQKEPLLFAHSERLAIAFGIISTSQGTP 656

Query: 467 IVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           + +MKNLR+CGDCH   KL SKI  R+ IVRD+ RFHHFK+G CSCKD+W
Sbjct: 657 LRIMKNLRVCGDCHAMTKLTSKITRREIIVRDSNRFHHFKNGSCSCKDFW 706



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 163/330 (49%), Gaps = 8/330 (2%)

Query: 30  EAVSLFGKMREQGVEINSVTMLCLLPIC-VDPGYLWLGMCCHCICVKFGLDLDFSVGNCL 88
           EA++LF +M +QG++ +SV+    +  C   P +L  G   H +  ++G          L
Sbjct: 118 EALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAVVATTSL 177

Query: 89  MTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDA 148
           ++MY KCGS++   K F+ + E   ++WNAMI+ +A++      L   ++M   G+   +
Sbjct: 178 VSMYSKCGSLEESVKTFESMTELNAVSWNAMIAAFAEHRRGLEALRTLQKMFLEGIRACS 237

Query: 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208
           VT++ ++S+            +   I   GF  +  + N ++NMY +CG L+ A A+F  
Sbjct: 238 VTYITLMSAYDQPSQLKSARYIHDCILRTGFDQD--VVNVILNMYGKCGCLQDAEAMFKS 295

Query: 209 MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
           M +  V++W  +I  Y  HGH   A++ ++ M + G+ PD   +VSV+ AC+  G  + G
Sbjct: 296 MSQPDVIAWNTMIAAYSQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDACATLGDMEVG 355

Query: 269 LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACK 328
            +    + ++   Q   E    +V++ G+ G L+ A  + +          W A++GA  
Sbjct: 356 KQVHRRLGDR-AFQV-TELANSLVNMYGKCGILDVARSIFDK--TAKGSVTWNAMIGAYA 411

Query: 329 IHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
            H + + A   F  +++L+     Y   +S
Sbjct: 412 QHSHEQQAFELF-LLMRLDGEEPSYITFMS 440



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 147/306 (48%), Gaps = 8/306 (2%)

Query: 57  CVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
           C   G L  G   H +  + GL  D  V N L+ MY KCGS++  R +F+  P K + +W
Sbjct: 44  CARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKNVFSW 103

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAH--SVGLEVEQQI 174
             +I+  AQ+G +   L L+ EM   G+ P +V+F   +++C+  G      G  +   +
Sbjct: 104 TILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACS-AGPEFLPAGRALHALL 162

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
           +  GF        +L++MY++CG+L+++   F+ M     VSW A+I  +  H  G  A+
Sbjct: 163 RRYGFQDAVVATTSLVSMYSKCGSLEESVKTFESMTELNAVSWNAMIAAFAEHRRGLEAL 222

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
           +   +M   GIR     +++++SA        K   Y +    + G     +    ++++
Sbjct: 223 RTLQKMFLEGIRACSVTYITLMSAYDQPSQL-KSARYIHDCILRTGFD--QDVVNVILNM 279

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
            G+ G L +A  + +SM  +PD   W  ++ A   H +   A L F ++++ E +    Y
Sbjct: 280 YGKCGCLQDAEAMFKSM-SQPDVIAWNTMIAAYSQHGHTSEA-LRFYELMQEEGVVPDDY 337

Query: 355 VLLSNI 360
             +S I
Sbjct: 338 TYVSVI 343



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 63/181 (34%), Positives = 99/181 (54%), Gaps = 1/181 (0%)

Query: 152 VGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR 211
           V V+ SCA LGA + G  + Q I+  G GS+ +++N L+ MY +CG+L++AR +F+  P 
Sbjct: 38  VRVIQSCARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPA 97

Query: 212 KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEY 271
           K V SWT +I     HG  + A+ LF EMLK GI+P   +F + ++ACS           
Sbjct: 98  KNVFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRA 157

Query: 272 FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHK 331
            + +  +YG Q      T +V +  + G L E+++  ESM  E +   W A++ A   H+
Sbjct: 158 LHALLRRYGFQDAVVATTSLVSMYSKCGSLEESVKTFESM-TELNAVSWNAMIAAFAEHR 216

Query: 332 N 332
            
Sbjct: 217 R 217


>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
           [Vitis vinifera]
 gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 188/501 (37%), Positives = 288/501 (57%), Gaps = 5/501 (0%)

Query: 21  GYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDL 80
           GY  N    EA+ L+ +M  Q  ++ +      L  C D G L  G   H   +K   D 
Sbjct: 152 GYSRNGYPKEALLLYYEMVCQFGQLGNFAFSMALKACSDLGDLQTGRAVHAQVLKATEDP 211

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140
           D  V N L+ +Y + G  D   ++FD +P + +++WN++I+G  +       +E +R M+
Sbjct: 212 DQVVNNALLRLYSEDGCFDEALRVFDGMPHRNVVSWNSLIAGLVKKDGVFEAIEAFRIMQ 271

Query: 141 SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
             G+    VT   +L  CA + A   G E+   I  +    +  + N+L++MYA+CG + 
Sbjct: 272 GKGMGFSWVTLTTILPVCARVTALGSGKEIHAVIVKSTAKPDAPVLNSLVDMYAKCGAMD 331

Query: 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
             R +F+GM  K + SW  +I GY I+G    A++ F EM+ SG  PDG  F+++LS CS
Sbjct: 332 YCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGITFIALLSGCS 391

Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320
           HAGL D G   F  MK  YG+ P  EHY C+VD+LGRAG++ EALE++++M  +P G++W
Sbjct: 392 HAGLADDGCRLFEMMKMDYGISPTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPTGSIW 451

Query: 321 GALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRER 380
           G+LL +C++H NV LAE    ++ +LEP N G YV+LSNIY+ A   + +  VR  M +R
Sbjct: 452 GSLLNSCRLHGNVPLAEAVAKRLFELEPNNAGNYVMLSNIYANAGMWESVKVVREFMEKR 511

Query: 381 RLKKDPGYSYVELKGRVHLFMVGDRNH-HQTVEIYRMLDKLENLVQEHDGTKRSD--QKN 437
            + K+ G S++++K ++H F+ G  N    +VE  ++  +L   ++E      +     +
Sbjct: 512 GMTKEAGCSWLQIKSKIHTFVAGGSNEFRNSVEYKKVWKRLMEAMEEVGYVPDTGVVLHD 571

Query: 438 SEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFI 495
             E +    V  HSE+LA  F +INT+ G  I + KNLR+C DCH ++K +SK+  R  +
Sbjct: 572 VSEEMRAMWVCGHSERLATMFALINTASGMPIRITKNLRVCVDCHSWVKTLSKVTGRVIV 631

Query: 496 VRDATRFHHFKSGFCSCKDYW 516
           +RD  RFHHFK G CSCKDYW
Sbjct: 632 LRDTNRFHHFKDGVCSCKDYW 652



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 135/249 (54%), Gaps = 13/249 (5%)

Query: 2   FDESIK-----STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPI 56
           FDE+++          V +N+LI+G V    V EA+  F  M+ +G+  + VT+  +LP+
Sbjct: 229 FDEALRVFDGMPHRNVVSWNSLIAGLVKKDGVFEAIEAFRIMQGKGMGFSWVTLTTILPV 288

Query: 57  CVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
           C     L  G   H + VK     D  V N L+ MY KCG++DY R++F+ +  K L +W
Sbjct: 289 CARVTALGSGKEIHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSW 348

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
           N +I+GYA NG  T  +E ++EM   G  PD +TF+ +LS C+H G    G  + + ++ 
Sbjct: 349 NTLITGYAINGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKM 408

Query: 177 NGFGSNPFLNN--ALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGH---- 229
           + +G +P + +   L+++  R G +K+A  I   MP K   S W +++    +HG+    
Sbjct: 409 D-YGISPTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLA 467

Query: 230 GEVAVQLFD 238
             VA +LF+
Sbjct: 468 EAVAKRLFE 476



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 121/297 (40%), Gaps = 13/297 (4%)

Query: 88  LMTMYVKCGSVDYGRKLFDQ------VPEKGLITWNAMISGYAQNGLATHVLELYREMKS 141
           L+T++  C  VD  R++F+       +PE     W AM  GY++NG     L LY EM  
Sbjct: 115 LITLFSVCRRVDEARRVFEDGGEDVDLPES---VWVAMGIGYSRNGYPKEALLLYYEMVC 171

Query: 142 LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKK 201
                    F   L +C+ LG    G  V  Q+       +  +NNAL+ +Y+  G   +
Sbjct: 172 QFGQLGNFAFSMALKACSDLGDLQTGRAVHAQVLKATEDPDQVVNNALLRLYSEDGCFDE 231

Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261
           A  +FDGMP + VVSW ++I G         A++ F  M   G+        ++L  C+ 
Sbjct: 232 ALRVFDGMPHRNVVSWNSLIAGLVKKDGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCAR 291

Query: 262 AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWG 321
                 G E  + +  K   +P       +VD+  + G ++    +   M  + D   W 
Sbjct: 292 VTALGSGKE-IHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGK-DLTSWN 349

Query: 322 ALLGACKIHKNVELAELAFGKVI--KLEPMNTGYYVLLSNIYSEARNLDGIMRVRMM 376
            L+    I+  +  A  +F ++I     P    +  LLS         DG     MM
Sbjct: 350 TLITGYAINGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMM 406



 Score = 42.7 bits (99), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 82/209 (39%), Gaps = 18/209 (8%)

Query: 117 NAMISGYAQNGLATHVLEL--YREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
           N+ +   +++G     L L  Y   KS    PD       L SC    A   G  +  Q+
Sbjct: 35  NSTLKSLSKSGKLDEALRLIEYWPSKSPATAPDVEACALFLHSCISRKALEHGQRLYLQL 94

Query: 175 QA------NGFGSNPFLNNALINMYARCGNLKKARAIF-DG-----MPRKTVVSWTAIIG 222
                   +   +NP L   LI +++ C  + +AR +F DG     +P      W A+  
Sbjct: 95  LLYRDRCNHNLLNNPTLKGKLITLFSVCRRVDEARRVFEDGGEDVDLPESV---WVAMGI 151

Query: 223 GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQ 282
           GY  +G+ + A+ L+ EM+    +    AF   L ACS  G    G    +    K    
Sbjct: 152 GYSRNGYPKEALLLYYEMVCQFGQLGNFAFSMALKACSDLGDLQTG-RAVHAQVLKATED 210

Query: 283 PGPEHYTCMVDLLGRAGQLNEALELIESM 311
           P       ++ L    G  +EAL + + M
Sbjct: 211 PDQVVNNALLRLYSEDGCFDEALRVFDGM 239


>gi|125575213|gb|EAZ16497.1| hypothetical protein OsJ_31969 [Oryza sativa Japonica Group]
          Length = 617

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 192/524 (36%), Positives = 296/524 (56%), Gaps = 12/524 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+  +     V + A+I GY  N  +  AV  F  M+ +G+      + C   +    
Sbjct: 98  VFDQMPQKD--AVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFC--SVLSAS 153

Query: 61  GYL---WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK-GLITW 116
           G L   WL    HC   K G +L+ +V N L+ MY K   V+   ++    P    +++ 
Sbjct: 154 GGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSG 213

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
            +MI GY +       L +Y E++  GV P+  TF  ++  CA       G ++  Q+  
Sbjct: 214 TSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIK 273

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
                + F+ + L++MY +CG +  +  +F+ +  +T ++W A+I  +  HGHG  A+Q 
Sbjct: 274 TDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQA 333

Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
           FD M+ SGIRP+  AFVS+L+ACSHAGL D+GL+YFY MK  +G++P  EHY+C++D  G
Sbjct: 334 FDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYG 393

Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356
           RAG+L+EA + I  M ++P+   W +LLGAC++  + EL E+A   ++KLEP NTG +V 
Sbjct: 394 RAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVS 453

Query: 357 LSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRM 416
           LS IY+     + +  VR +MR+ R+KK PG+S+V+   + H+F   D +H Q  +IY  
Sbjct: 454 LSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEK 513

Query: 417 LDKLENLVQEHDGTKRSD--QKNSEEHLNDT--EVHSEKLAIAFGIINTSPGTEIVVMKN 472
           L++L   ++E      +     N E+   +     HSE++A+AF +I+      I+V KN
Sbjct: 514 LEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSERIAVAFALISMPATKPIIVKKN 573

Query: 473 LRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           LRIC DCH   K + K+  R  IVRD +RFHHF +G CSC DYW
Sbjct: 574 LRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCSCGDYW 617



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 165/351 (47%), Gaps = 6/351 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +  L+SG   N + ++A++ F  MR  GV      +          G    G   HC
Sbjct: 6   AVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPGAQLHC 65

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + V+ G D +  V + L  MY KCG +    ++FDQ+P+K  + W AMI GYA+NG    
Sbjct: 66  VGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEA 125

Query: 132 VLELYREMKSLG-VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
            +  +R+MK  G V  D   F  VLS+   L    +   +   +   GF     + NALI
Sbjct: 126 AVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALI 185

Query: 191 NMYARCGNLKKARAIFDGMPRK-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           +MYA+  +++ A  +    P    VVS T++I GY      E A+ ++ E+ + G+ P+ 
Sbjct: 186 DMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNE 245

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
             F S++  C+   L ++G +  +    K  L       + +VD+ G+ G ++ +++L  
Sbjct: 246 FTFSSMIKGCAMQALLEQGAQ-LHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFN 304

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI--KLEPMNTGYYVLLS 358
            +    D A W A++     H +   A  AF ++I   + P +  +  LL+
Sbjct: 305 EIEYRTDIA-WNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLT 354



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 118/254 (46%), Gaps = 23/254 (9%)

Query: 108 VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA---- 163
           +P +  ++W  ++SG +QN +    L  +  M+  GV P          + A LGA    
Sbjct: 1   MPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPG 60

Query: 164 ---HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
              H VG+ +       GF +  F+ + L +MY++CG L +A  +FD MP+K  V+WTA+
Sbjct: 61  AQLHCVGVRL-------GFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAM 113

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSG-IRPDGTAFVSVLSACSHAGLTDKGL-EYFYGMKNK 278
           I GY  +G  E AV  F +M + G +  D   F SVLSA    GL D  L +  +    K
Sbjct: 114 IDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSA--SGGLKDGWLSKSIHCCVTK 171

Query: 279 YGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAEL 338
            G +        ++D+  ++  +  A  +++   ++P G  W  + G   I   +E   +
Sbjct: 172 AGFELEVAVRNALIDMYAKSMDVESASRVLK---IDPGG--WNVVSGTSMIDGYIETDCV 226

Query: 339 AFGKVIKLEPMNTG 352
               VI +E    G
Sbjct: 227 EEALVIYVELRRQG 240


>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
          Length = 1822

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 183/425 (43%), Positives = 265/425 (62%), Gaps = 5/425 (1%)

Query: 96   GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
            G VD  R LFD +P++  + W+AMI+GY   G +   L L+ EM S G      T V VL
Sbjct: 1399 GDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVL 1458

Query: 156  SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
            ++CA +G    G  V   +++ G   +  L  AL++MY++CG +  A  +F+ M  + V 
Sbjct: 1459 TACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVY 1518

Query: 216  SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
            +WT+ + G  ++G G   +QLF  M  +GI+P+G +FV+VL  CS AGL D+G   F  M
Sbjct: 1519 TWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSM 1578

Query: 276  KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVEL 335
             +KYG+ P PEHY CMVDL GRAG+L++A+  I  M +EP   VWGALL A +IH +V+L
Sbjct: 1579 -DKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDL 1637

Query: 336  AELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKG 395
             + A  K++ +E  N   +V LSNIY+E++N  G+ RVR MM+ + +KK PG+S +E+ G
Sbjct: 1638 GKYALDKLLAIESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDG 1697

Query: 396  RVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQK----NSEEHLNDTEVHSEK 451
            +VH F VG R H +  EI  ML +++  ++    T  + +       EE      +HSEK
Sbjct: 1698 KVHEFYVGGRLHPRYNEIELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSEK 1757

Query: 452  LAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCS 511
            LA+AFG+I      EI ++KNLR+C DCH +IKLVSK+ +R+ ++RD  RFHHFK G CS
Sbjct: 1758 LALAFGLIVLPEDVEIRIVKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECS 1817

Query: 512  CKDYW 516
            C+DYW
Sbjct: 1818 CRDYW 1822



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 146/323 (45%), Gaps = 13/323 (4%)

Query: 1    VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
            +FD   +  H  V ++A+I+GY+      EA+ LF +M   G  +   T++ +L  C   
Sbjct: 1407 LFDGMPQRDH--VAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQI 1464

Query: 61   GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
            G L  G   H      G+ +   +G  L+ MY KCG+V    ++F+ + E+ + TW + +
Sbjct: 1465 GTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAV 1524

Query: 121  SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            SG A NG+ T  L+L++ M+  G+ P+ V+FV VL  C+  G    G      +   G  
Sbjct: 1525 SGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMDKYGVD 1584

Query: 181  SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFDE 239
              P     ++++Y R G L  A +  + MP +     W A++    IH   ++     D+
Sbjct: 1585 PWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDK 1644

Query: 240  MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR-- 297
            +L   I  +  A    LS         KG+    GM    G++  P   T  VD  G+  
Sbjct: 1645 LL--AIESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVD--GKVH 1700

Query: 298  ----AGQLNEALELIESMLVEPD 316
                 G+L+     IE ML E D
Sbjct: 1701 EFYVGGRLHPRYNEIELMLAEMD 1723



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 73/125 (58%), Gaps = 1/125 (0%)

Query: 187  NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
             A++   A  G++  AR +FDGMP++  V+W+A+I GY   G    A+ LFDEML +G  
Sbjct: 1389 TAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTT 1448

Query: 247  PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
                  VSVL+AC+  G  D+G    + ++++ G+Q   +  T +VD+  + G +  A+E
Sbjct: 1449 VGEATLVSVLTACAQIGTLDRGKWVHWYVRSR-GMQMSIKLGTALVDMYSKCGAVVTAME 1507

Query: 307  LIESM 311
            + ESM
Sbjct: 1508 VFESM 1512


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 185/509 (36%), Positives = 294/509 (57%), Gaps = 6/509 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +  +I+GY  N    EA++LF K++ +G++++ + +  +L  C            H  
Sbjct: 416 ISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGY 475

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K  L  D  + N ++ +Y + G  DY R+ F+ +  K +++W +MI+    NGL    
Sbjct: 476 VFKRDL-ADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEA 534

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           LEL+  +K   + PD++  +  LS+ A+L +   G E+   +   GF     + ++L++M
Sbjct: 535 LELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDM 594

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA CG ++ +R +F  + ++ ++ WT++I   G+HG G  A+ LF +M    + PD   F
Sbjct: 595 YACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITF 654

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +++L ACSH+GL  +G  +F  MK  Y L+P PEHY CMVDLL R+  L EA + + SM 
Sbjct: 655 LALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMP 714

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           ++P   VW ALLGAC IH N EL ELA  ++++ +  N+G Y L+SNI++     + +  
Sbjct: 715 IKPSSEVWCALLGACHIHSNKELGELAAKELLQSDTKNSGKYALISNIFAADGRWNDVEE 774

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDG--- 429
           VR+ M+   LKK+PG S++E+  ++H FM  D++H QT +IY  L +   L+ +  G   
Sbjct: 775 VRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLGKKGGYIA 834

Query: 430 -TKRSDQKNSEEHLNDTEV-HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
            TK      SEE        HSE+LA+ +G++ T  GT I + KNLRIC DCH F K+ S
Sbjct: 835 QTKFVFHNVSEEEKTQMLYRHSERLALGYGLLVTPKGTSIRITKNLRICDDCHTFFKIAS 894

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           ++  R  +VRDA RFHHF+ G CSC D+W
Sbjct: 895 EVSQRALVVRDANRFHHFERGLCSCGDFW 923



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 108/352 (30%), Positives = 170/352 (48%), Gaps = 9/352 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD  +     TV +N++IS +V      EA+SLF +M+E GV  N+ T +  L    DP
Sbjct: 202 LFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDP 261

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
            ++ LGM  H   +K     D  V N L+ MY KCG ++   ++F  +  +  ++WN ++
Sbjct: 262 SFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLL 321

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SG  QN L    L  +R+M++    PD V+ + ++++    G    G EV      NG  
Sbjct: 322 SGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLD 381

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           SN  + N LI+MYA+C  +K     F+ M  K ++SWT II GY  +     A+ LF ++
Sbjct: 382 SNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKV 441

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKG-LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
              G+  D     SVL ACS  GL  +  +   +G   K  L         +V++ G  G
Sbjct: 442 QVKGMDVDPMMIGSVLRACS--GLKSRNFIREIHGYVFKRDLADIMLQ-NAIVNVYGEVG 498

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKN--VELAELAFG-KVIKLEP 348
             + A    ES +   D   W +++  C +H    VE  EL +  K   ++P
Sbjct: 499 HRDYARRAFES-IRSKDIVSWTSMITCC-VHNGLPVEALELFYSLKQTNIQP 548



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 90/274 (32%), Positives = 132/274 (48%), Gaps = 6/274 (2%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           LL +CV    L  G   H   +K  L    +    L+ MY KCGS+    K+FD++ E+ 
Sbjct: 52  LLDLCVAVKALPQGQQLHARLLKSHLSAFLATK--LLHMYEKCGSLKDAVKVFDEMTERT 109

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
           + TWNAM+  +  +G     +ELY+EM+ LGV  DA TF  VL +C  LG   +G E+  
Sbjct: 110 IFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHG 169

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG--MPRKTVVSWTAIIGGYGIHGHG 230
                GFG   F+ NALI MY +CG+L  AR +FDG  M ++  VSW +II  +   G  
Sbjct: 170 VAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKC 229

Query: 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC 290
             A+ LF  M + G+  +   FV+ L           G+   +G   K            
Sbjct: 230 LEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMG-IHGAALKSNHFADVYVANA 288

Query: 291 MVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
           ++ +  + G++ +A  +  SML   D   W  LL
Sbjct: 289 LIAMYAKCGRMEDAERVFASMLCR-DYVSWNTLL 321



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 151/301 (50%), Gaps = 9/301 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  + T  T  +NA++  +V +    EA+ L+ +MR  GV I++ T   +L  C   
Sbjct: 101 VFDEMTERTIFT--WNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGAL 158

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV--PEKGLITWNA 118
           G   LG   H + VK G      V N L+ MY KCG +   R LFD +   ++  ++WN+
Sbjct: 159 GESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNS 218

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVE-QQIQAN 177
           +IS +   G     L L+R M+ +GV  +  TFV  L          +G+ +    +++N
Sbjct: 219 IISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSN 278

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
            F ++ ++ NALI MYA+CG ++ A  +F  M  +  VSW  ++ G   +     A+  F
Sbjct: 279 HF-ADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYF 337

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLG 296
            +M  S  +PD  + +++++A   +G    G E + Y ++N  GL    +    ++D+  
Sbjct: 338 RDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRN--GLDSNMQIGNTLIDMYA 395

Query: 297 R 297
           +
Sbjct: 396 K 396


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 197/520 (37%), Positives = 308/520 (59%), Gaps = 22/520 (4%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +NA+I+GY +     +A+ LF KM+E G  ++  T    L  C D G +  G   H  
Sbjct: 140 ISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAF 199

Query: 73  CVKFGL--DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
            +  G    ++ +V   L+ +YVKCG +   R++F  + EK +I+W A+I GYAQ G   
Sbjct: 200 LITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLA 259

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF------GSNPF 184
             +EL+R+++   +  D      +LSS   +G  +    V+Q  Q + F      G +  
Sbjct: 260 ESMELFRQLRESSIQVDGF----ILSS--MMGVFADFALVQQGKQMHAFAIKVPSGVDIS 313

Query: 185 LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
           + N++++MY +CG + +A  +F  MP + V+SWT +I GYG HG G+ A++LFDEM    
Sbjct: 314 VCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDS 373

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
             PD   +++VL  CSH+GL +KG EYF  + + +G++   EHY CMVDLLGRAG+L EA
Sbjct: 374 TEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEA 433

Query: 305 LELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEA 364
             L++SM +E +  +W  LL AC++H ++EL +   G +++L+  N   YV++SNIY++A
Sbjct: 434 KNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDSENPVNYVMMSNIYADA 493

Query: 365 RNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLV 424
                  R+R +++ ++LKK+ G S+VE+   VH F  GD  H  T +I+ +L ++E  +
Sbjct: 494 GYWKECERIRELVKSKKLKKEAGRSWVEIDKEVHFFYGGDDTHPLTEKIHEILKEMERRM 553

Query: 425 QEH----DGTKRSDQKNSEE-HLNDTEVHSEKLAIAFGII--NTSPGTEIV-VMKNLRIC 476
           +E      G K +     EE  +++  VHSEKLAI   ++      G +++ V KNLR+C
Sbjct: 554 KEELGYVYGVKYALHDVEEESKMDNLRVHSEKLAIGLALVCGGLEEGRKVIRVFKNLRVC 613

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           GDCH FIK +SKI+   F+VRDA RFH F+ G CSC+DYW
Sbjct: 614 GDCHEFIKGLSKILRVVFVVRDANRFHRFEDGLCSCRDYW 653



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 104/316 (32%), Positives = 165/316 (52%), Gaps = 11/316 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD  +K     V + AL+ G++ N    E++ LF KM   GV+ N  T    L  C   
Sbjct: 29  VFDRMLKRN--VVSWTALMCGHIQNGNPLESLLLFSKMGLSGVKPNDFTFSTNLKACGLL 86

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L +G   H ICVK G D+   VGN ++ MY KCG ++    +F+ +P + LI+WNAMI
Sbjct: 87  NGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMPVRNLISWNAMI 146

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF- 179
           +GY   G     L L+++M+ +G   D  TF   L +C+ LGA   G ++   +   GF 
Sbjct: 147 AGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFL 206

Query: 180 -GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
              N  +  ALI++Y +CG L  AR +F  +  K V+SWTA+I GY   G+   +++LF 
Sbjct: 207 YSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFR 266

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTC--MVDLL 295
           ++ +S I+ DG    S++   +   L  +G + + + +K    +  G +   C  ++D+ 
Sbjct: 267 QLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIK----VPSGVDISVCNSILDMY 322

Query: 296 GRAGQLNEALELIESM 311
            + G +NEA  L   M
Sbjct: 323 LKCGMINEAERLFSEM 338



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 105/193 (54%), Gaps = 2/193 (1%)

Query: 76  FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLEL 135
           FG DL  S  N L+ MY KCG +     +FD++ ++ +++W A++ G+ QNG     L L
Sbjct: 3   FGFDLMLS--NDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLL 60

Query: 136 YREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR 195
           + +M   GV P+  TF   L +C  L    +G ++       GF     + N++I+MY++
Sbjct: 61  FSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSK 120

Query: 196 CGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSV 255
           CG + +A  +F+ MP + ++SW A+I GY + G  E A+ LF +M + G   D   F S 
Sbjct: 121 CGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTST 180

Query: 256 LSACSHAGLTDKG 268
           L ACS  G   +G
Sbjct: 181 LKACSDLGAIKEG 193



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 86/166 (51%), Gaps = 2/166 (1%)

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
           GFG +  L+N LI MY +CG L  A  +FD M ++ VVSWTA++ G+  +G+   ++ LF
Sbjct: 2   GFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLF 61

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
            +M  SG++P+   F + L AC      D G +  + +  K G          ++D+  +
Sbjct: 62  SKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQ-IHDICVKTGFDMVNVVGNSIIDMYSK 120

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
            G++NEA  + E M V  +   W A++    +    E A + F K+
Sbjct: 121 CGRINEAACMFEVMPVR-NLISWNAMIAGYTVAGFCEKALVLFQKM 165


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 196/507 (38%), Positives = 293/507 (57%), Gaps = 12/507 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N ++SG   N  + EA ++F  M  +    N+V+   ++      G +        +  
Sbjct: 106 WNTMVSGLSKNGAIEEAEAMFRAMPAR----NAVSWNAMVAARASSGDM---GAAENLFR 158

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
                 D  +   +++ Y+  G+V    + F  +P + L++WNA+++GY +N  A   L 
Sbjct: 159 NAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALR 218

Query: 135 LYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
           +++ M +   V P+  T   VL  C++L A   G +V Q       G +  +  +L++MY
Sbjct: 219 VFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMY 278

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
            +CG+L  A  +FD M  K +V+W A+I GY  HG G  A++LF++M   G+ PD    +
Sbjct: 279 CKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLL 338

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           +VL+AC H GL D G++ F  M+  Y ++P  +HY+CMVDLL RAG L  A+ +I SM  
Sbjct: 339 AVLTACIHTGLCDFGIQCFETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSMPF 398

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
           EP  + +G LL AC+++KN+E AE A  K+I+ +P N G YV L+NIY+ A   D + RV
Sbjct: 399 EPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANRWDDVSRV 458

Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS 433
           R  M++  + K PGYS++E+KG  H F   DR H Q   I+  LD+L  L++    +   
Sbjct: 459 RRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLDLIHDKLDRLGKLMKAMGYSPDL 518

Query: 434 D--QKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKI 489
           D    + EE L    +  HSEKLAIAFG+I+TSPG  + + KNLRICGDCH   KL+SKI
Sbjct: 519 DFALHDVEESLKSQMLMRHSEKLAIAFGLISTSPGMTLRIFKNLRICGDCHNAAKLISKI 578

Query: 490 VDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DR+ I+RD TRFHHF+ G CSC DYW
Sbjct: 579 EDREIILRDTTRFHHFRGGHCSCGDYW 605



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 122/249 (48%), Gaps = 16/249 (6%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L++ +  CG +D   ++F  +P + + +WN M+SG ++NG       ++R M +    
Sbjct: 76  NTLLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPAR--- 132

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
            +AV++  ++++ A  G        E   +     ++  L  A+++ Y   GN++KA   
Sbjct: 133 -NAVSWNAMVAARASSGDMGAA---ENLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEY 188

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI-RPDGTAFVSVLSACSHAGL 264
           F  MP + +VSW A++ GY  +     A+++F  M++  I +P+ +   SVL  CS+   
Sbjct: 189 FRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSA 248

Query: 265 TDKGLE-YFYGMKNKYG--LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWG 321
              G + + + MK   G  +  G    T ++ +  + G L++A +L + M  + D   W 
Sbjct: 249 LGFGRQVHQWCMKLPLGRSITVG----TSLLSMYCKCGDLDDACKLFDEMHTK-DIVAWN 303

Query: 322 ALLGACKIH 330
           A++     H
Sbjct: 304 AMISGYAQH 312



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE    T   V +NA+ISGY  +    +A+ LF KM+++GV  + +T+L +L  C+  
Sbjct: 290 LFDE--MHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHT 347

Query: 61  GYLWLGM-CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP 109
           G    G+ C   +   + ++      +C++ +  + G ++    +   +P
Sbjct: 348 GLCDFGIQCFETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSMP 397


>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
 gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
          Length = 606

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 202/527 (38%), Positives = 302/527 (57%), Gaps = 14/527 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSE-----AVSLFGKMREQGVEINSVTMLCLLP 55
           VFD  +      V YN L+ GY  +S  S      AV +F +M E+GV  ++ T + LL 
Sbjct: 83  VFDR-VPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEGVAPDTYTFVSLLK 141

Query: 56  ICVDPGYLWLGMCCHCICVKFGL-DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLI 114
            C        G   H + VK G  D D+ V   L+ MY +CG     R +F       ++
Sbjct: 142 ACAAARAGEEGRQAHALAVKLGAADHDY-VRPTLINMYAECGDARAARVMFGGTDGGCVV 200

Query: 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
           ++NAMI+   ++      L L+REM+  G+ P +VT + VLS+CA LGA  +G  V   +
Sbjct: 201 SYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLSACALLGALELGRWVHDYV 260

Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
           +  G GS   ++ ALI+MYA+CG+L+ A  +F GM  K   +W+ +I  Y  HG+G  A+
Sbjct: 261 RKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMESKDRQAWSVMIVAYANHGYGREAI 320

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
            LF+EM K G++PD   F+ VL ACSH+GL  +GL+YF  MK+ +G+ PG +HY C+ DL
Sbjct: 321 SLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGLQYFDDMKD-HGIVPGIKHYGCVTDL 379

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           L R+GQL  A + I+ + + P   +W  LL AC  H + EL +  F +++KL+  + G Y
Sbjct: 380 LARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDFELGKRVFERILKLDDSHGGDY 439

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
           V+ SN+ +     + +  VR +M E+ + K PG S +E+   VH F  GD  H ++ E  
Sbjct: 440 VIFSNLCANTGYWEEMNMVRKLMSEKGVVKVPGCSSIEIDNTVHEFFAGDGRHPKSQEAR 499

Query: 415 RMLDKLENLVQEHDGTKRSD-----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVV 469
           +M+D++ + ++       +      +   EE     + HSEKLAIAFG++NT+PG  + V
Sbjct: 500 KMVDEVIDQLKLVGYVPNTSHVFHVEMGEEEKAISLKYHSEKLAIAFGLLNTAPGATLRV 559

Query: 470 MKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +KNLR+C DCH   KLVS + +R+ I+RD  RFHHF+ G CSC DYW
Sbjct: 560 VKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEEGICSCGDYW 606



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 113/237 (47%), Gaps = 8/237 (3%)

Query: 100 YGRKLFDQVPEKGLITW-NAMISGYAQ-----NGLATHVLELYREMKSLGVCPDAVTFVG 153
           Y R++FD+VP      W N ++ GYA+     +  A   + ++  M   GV PD  TFV 
Sbjct: 79  YARQVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEGVAPDTYTFVS 138

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
           +L +CA   A   G +        G   + ++   LINMYA CG+ + AR +F G     
Sbjct: 139 LLKACAAARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAECGDARAARVMFGGTDGGC 198

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
           VVS+ A+I           A+ LF EM   G++P     +SVLSAC+  G  + G  + +
Sbjct: 199 VVSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLSACALLGALELG-RWVH 257

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
               K GL    +  T ++D+  + G L +A+++ + M  + D   W  ++ A   H
Sbjct: 258 DYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMESK-DRQAWSVMIVAYANH 313


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 199/524 (37%), Positives = 295/524 (56%), Gaps = 20/524 (3%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
            V +N ++ G +       A+     M E G E ++VT    L +     ++ LG   H +
Sbjct: 488  VSWNTIVDGLLQCGYERHALEQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHGM 547

Query: 73   CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP----------------EKGLITW 116
             +KFG D D  + + L+ MY KCG +D    +   VP                + G+++W
Sbjct: 548  VLKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSW 607

Query: 117  NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
             +M+SGY  NG     L+ +R M    V  D  T   ++S+CA+ G    G  V   +Q 
Sbjct: 608  GSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAYVQK 667

Query: 177  NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
             G   + ++ ++LI+MY++ G+L  A  +F       +V WT++I GY +HG G  A+ L
Sbjct: 668  IGHRIDAYVGSSLIDMYSKSGSLDDAWMVFRQSNEPNIVMWTSMISGYALHGQGMHAIGL 727

Query: 237  FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
            F+EML  GI P+   F+ VL+ACSHAGL ++G  YF  MK+ Y + PG EH T MVDL G
Sbjct: 728  FEEMLNQGIIPNEVTFLGVLNACSHAGLIEEGCRYFRMMKDAYCINPGVEHCTSMVDLYG 787

Query: 297  RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356
            RAG L +    I    +    +VW + L +C++HKNVE+ +     ++++ P + G YVL
Sbjct: 788  RAGHLTKTKNFIFKNGISHLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVL 847

Query: 357  LSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRM 416
            LSN+ +     D   RVR +M +R +KK PG S+++LK ++H F++GDR+H Q  EIY  
Sbjct: 848  LSNMCASNHRWDEAARVRSLMHQRGVKKQPGQSWIQLKDQIHTFVMGDRSHPQDDEIYSY 907

Query: 417  LDKLENLVQE--HDGTKRSDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKN 472
            LD L   ++E  +    +   ++ EE   +  +  HSEKLA+ FGIINT+  T I ++KN
Sbjct: 908  LDILIGRLKEIGYSFDVKLVMQDVEEEQGEVLISHHSEKLAVVFGIINTANRTPIRIIKN 967

Query: 473  LRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            LRIC DCH FIK  S+++DR+ IVRD  RFHHFK G CSC DYW
Sbjct: 968  LRICTDCHNFIKYASQLLDREIIVRDIHRFHHFKHGSCSCGDYW 1011



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 168/377 (44%), Gaps = 51/377 (13%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +    T  +  LISG+          +LF +M+ +G   N  T+  +L  C   
Sbjct: 346 LFDEIPQRN--TQTWTILISGFARAGSSEMVFNLFREMQAKGACPNQYTLSSVLKCCSLD 403

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFD-------------- 106
             L LG   H   ++ G+D+D  +GN ++ +Y+KC   +Y  +LF+              
Sbjct: 404 NNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERLFELMNEGDVVSWNIMI 463

Query: 107 -----------------QVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
                            ++P K +++WN ++ G  Q G   H LE    M   G    AV
Sbjct: 464 GAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHALEQLYCMVECGTEFSAV 523

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
           TF   L   + L    +G ++   +   GF S+ F+ ++L+ MY +CG + KA  I   +
Sbjct: 524 TFSIALILASSLSHVELGRQLHGMVLKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRDV 583

Query: 210 ----------------PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
                           P+  +VSW +++ GY  +G  E  ++ F  M++  +  D     
Sbjct: 584 PLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVT 643

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           +++SAC++AG+ + G  + +    K G +      + ++D+  ++G L++A  ++     
Sbjct: 644 TIISACANAGILEFG-RHVHAYVQKIGHRIDAYVGSSLIDMYSKSGSLDDAW-MVFRQSN 701

Query: 314 EPDGAVWGALLGACKIH 330
           EP+  +W +++    +H
Sbjct: 702 EPNIVMWTSMISGYALH 718



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 132/282 (46%), Gaps = 32/282 (11%)

Query: 12  TVCYN-ALISGYVLNSLVSE-AVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCC 69
           T+C + A++ G +L S +S+ +V+  G +   G  I+S       P    P  LWL  C 
Sbjct: 246 TICTSLAVVGGSMLASKISQRSVATVGGLLFIGFSISSY----FYP----P--LWLQSCS 295

Query: 70  ----------------HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL 113
                           H + VK G     +  N L+T+Y K  ++ + +KLFD++P++  
Sbjct: 296 LYHFTLSNSPPPLGTLHALYVKNGSLQTLNPANHLLTLYAKSNNMAHAQKLFDEIPQRNT 355

Query: 114 ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQ 173
            TW  +ISG+A+ G +  V  L+REM++ G CP+  T   VL  C+      +G  V   
Sbjct: 356 QTWTILISGFARAGSSEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDNNLQLGKGVHAW 415

Query: 174 IQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVA 233
           +  NG   +  L N+++++Y +C   + A  +F+ M    VVSW  +IG Y   G  E +
Sbjct: 416 MLRNGIDVDVVLGNSILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIGAYLRAGDVEKS 475

Query: 234 VQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           + +F  +       D  ++ +++      G     LE  Y M
Sbjct: 476 LDMFRRLPYK----DVVSWNTIVDGLLQCGYERHALEQLYCM 513


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 199/515 (38%), Positives = 293/515 (56%), Gaps = 19/515 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  +ISGY       EA+ LF KM   G   N  T+  +L  C  P  ++ G   H +
Sbjct: 109 VSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSL 168

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK   +    VG+ L+ MY K  ++   R++FD +PE+ +++  A+ISGYAQ GL    
Sbjct: 169 LVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEA 228

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L+L+R++ S G+  + VTF  ++++ + L +   G +V   I          L N+LI+M
Sbjct: 229 LDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDM 288

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y++CG L  +R +FD M  ++VVSW A++ GYG HG G   + LF ++ K  ++PD    
Sbjct: 289 YSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTL 347

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           ++VLS CSH GL D+GL+ F  +  +        HY C++DLLGR+G+L +AL LIE+M 
Sbjct: 348 LAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMP 407

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            E   ++WG+LLGAC++H NV + EL   K++++EP N G YV+LSNIY+ A     + +
Sbjct: 408 FESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFK 467

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD------KLENLVQE 426
           VR +M E+ + K+PG S++ L   +H F   +R H    +I   +       K    V +
Sbjct: 468 VRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPD 527

Query: 427 -----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHL 481
                HD     D +  E  L     HSEKLAI FG++NT PG  I VMKNLRIC DCH 
Sbjct: 528 LSCVLHD----VDDEQKERMLLG---HSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHN 580

Query: 482 FIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           F K VSK+ +R+  +RD  RFH    G C+C DYW
Sbjct: 581 FAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 615



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 145/279 (51%), Gaps = 24/279 (8%)

Query: 57  CVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
           C++   LW G   H   +         +G  L+TMYV+CG++D  R + D++PE+ +++W
Sbjct: 52  CIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSW 111

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
             MISGY+Q       L+L+ +M   G  P+  T   VL+SC+   +   G +V   +  
Sbjct: 112 TTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVK 171

Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
             F S+ F+ ++L++MYA+  N+++AR +FD +P + VVS TAII GY   G  E A+ L
Sbjct: 172 TNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDL 231

Query: 237 FDEMLKSGIRPDGTAFVSVLSACS-----------HAGLTDKGLEYFYGMKNKYGLQPGP 285
           F ++   G++ +   F ++++A S           HA +  K L +F  ++N        
Sbjct: 232 FRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNS------- 284

Query: 286 EHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
                ++D+  + G+L  +  + ++ML E     W A+L
Sbjct: 285 -----LIDMYSKCGKLLYSRRVFDNML-ERSVVSWNAML 317



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 68/150 (45%)

Query: 111 KGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEV 170
           +GL+   A   G A        L     M   G       +   +++C    A   G +V
Sbjct: 5   RGLLRPEAAARGLALQRCFVAPLRAASGMALPGASARFHEYEAAITACIERRALWEGRQV 64

Query: 171 EQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHG 230
             ++    +    FL   L+ MY RCG L  AR + D MP ++VVSWT +I GY      
Sbjct: 65  HARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERH 124

Query: 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
             A+ LF +ML++G  P+     +VL++CS
Sbjct: 125 VEALDLFIKMLRAGCIPNEYTLATVLTSCS 154


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 205/552 (37%), Positives = 294/552 (53%), Gaps = 39/552 (7%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD   +    T  +N +I GY  +    EA+ L+  M    V  N+ T   LL  C   
Sbjct: 74  VFDRIFRPN--TFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSM 131

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV------------ 108
                    H   +K G   +    N L+ +Y K G +   R LFDQV            
Sbjct: 132 SASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMI 191

Query: 109 -------------------PEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
                              PE+ +I+W +MISG    G     L L+  M++ G+  D V
Sbjct: 192 DGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNV 251

Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
             V  L +CA LG    G  +   I+ +    +P L   LI+MYA+CG+L++A  +F  M
Sbjct: 252 ALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKM 311

Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
             K V  WTA+I GY IHG G  A++ F +M  +G+ P+   F  +L+ACSHAGL  +  
Sbjct: 312 EEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAK 371

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
             F  M+  +G +P  EHY CMVDLLGRAG L EA ELIE+M V+P+ A+WGALL AC I
Sbjct: 372 LLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHI 431

Query: 330 HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYS 389
           H N+EL +     +I+++P + G Y+ L++I++ A   +   RVR  M+E+ + K PG S
Sbjct: 432 HGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCS 491

Query: 390 YVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEV-- 447
            + + G  H F+ GD +H Q  EI  ML+++   ++E +G K        +  +  +   
Sbjct: 492 VISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLRE-EGYKPKLGDLLLDLEDKEKETA 550

Query: 448 ---HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHH 504
              HSEKLA+ FG+I+T PG  I ++KNLR+C DCH  IKL+SK+  R+ ++RD TRFH 
Sbjct: 551 IHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHL 610

Query: 505 FKSGFCSCKDYW 516
           FK G C+C DYW
Sbjct: 611 FKDGNCTCGDYW 622



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 145/320 (45%), Gaps = 38/320 (11%)

Query: 44  EINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVK--CGSVDYG 101
           E N+   L LL  C +   L      H   +K GL LD    + L+        GS+ Y 
Sbjct: 15  ESNAAQTLHLLQRCSNMEEL---RQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYA 71

Query: 102 RKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL 161
           R +FD++       WN MI GY+ +      L LY  M    V  +A TF  +L +C+ +
Sbjct: 72  RTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSM 131

Query: 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG------------- 208
            A     ++   I   GFGS  +  N+L+N+Y++ G++K AR +FD              
Sbjct: 132 SASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMI 191

Query: 209 ------------------MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
                             MP + ++SWT++I G    G  + A+ LF  M  +GI+ D  
Sbjct: 192 DGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNV 251

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
           A VS L AC+  G+ D+G ++ +    K+ ++  P     ++D+  + G L EA+E+   
Sbjct: 252 ALVSTLQACADLGVLDQG-KWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRK 310

Query: 311 MLVEPDGAVWGALLGACKIH 330
           M  E   +VW A++    IH
Sbjct: 311 M-EEKGVSVWTAMISGYAIH 329


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 196/526 (37%), Positives = 303/526 (57%), Gaps = 17/526 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVD 59
           +FDE  +    +  + A+++GYV      EA+ L+  M R      N  T+   +     
Sbjct: 173 LFDEMTEKDSYS--WTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAA 230

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              +  G   H   V+ GLD D  + + LM MY KCG +D  R +FD++ EK +++W +M
Sbjct: 231 VKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSM 290

Query: 120 ISGYAQNGLATHVLELYREMKSLGVC--PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
           I  Y ++        L+ E+  +G C  P+  TF GVL++CA L    +G +V   +   
Sbjct: 291 IDRYFKSSRWREGFSLFSEL--VGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRV 348

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
           GF    F +++L++MY +CGN++ A+ + DG P+  +VSWT++IGG   +G  + A++ F
Sbjct: 349 GFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYF 408

Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
           D +LKSG +PD   FV+VLSAC+HAGL +KGLE+FY +  K+ L    +HYTC+VDLL R
Sbjct: 409 DLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLAR 468

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
           +G+  +   +I  M ++P   +W ++LG C  + N++LAE A  ++ K+EP N   YV +
Sbjct: 469 SGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTM 528

Query: 358 SNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML 417
           +NIY+ A   +   ++R  M+E  + K PG S+ E+K + H+F+  D +H    +I   L
Sbjct: 529 ANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFL 588

Query: 418 DKLENLVQEHDGTKRS-------DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVM 470
            +L   ++E      +       + +  EE+L     HSEKLA+AF I++T  GT I V 
Sbjct: 589 RELRKKMKEEGYVPATSLVLHDVEDEQKEENL---VYHSEKLAVAFAILSTEEGTAIKVF 645

Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KNLR C DCH  IK +S I  R+  VRD+TRFH F++G CSC DYW
Sbjct: 646 KNLRSCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 147/336 (43%), Gaps = 40/336 (11%)

Query: 25  NSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSV 84
             L+ EAV L G+ ++        T   L+ +C     L  G   H      G      +
Sbjct: 67  QKLLREAVQLLGRAKKPPAS----TYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVI 122

Query: 85  GNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG- 143
            N L+ MY KCGS+   RK+FD++P + L +WN M++GYA+ GL     +L+ EM     
Sbjct: 123 WNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDS 182

Query: 144 ----------VCPDAVTFVGVLSSCAHLGAHS---------------------VGLEVEQ 172
                     V  D      VL S      +S                      G E+  
Sbjct: 183 YSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHG 242

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
            I   G  S+  L ++L++MY +CG + +AR IFD +  K VVSWT++I  Y        
Sbjct: 243 HIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWRE 302

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL-EYFYGMKNKYGLQPGPEHYTCM 291
              LF E++ S  RP+   F  VL+AC  A LT + L +  +G   + G  P     + +
Sbjct: 303 GFSLFSELVGSCERPNEYTFAGVLNAC--ADLTTEELGKQVHGYMTRVGFDPYSFASSSL 360

Query: 292 VDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           VD+  + G +  A  +++    +PD   W +L+G C
Sbjct: 361 VDMYTKCGNIESAKHVVDG-CPKPDLVSWTSLIGGC 395


>gi|356562443|ref|XP_003549481.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 836

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 193/535 (36%), Positives = 298/535 (55%), Gaps = 70/535 (13%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  LISG     L  +A++LF +MR+  V ++  T+  +L +C    Y   G   H  
Sbjct: 341 VSWTCLISGVAQFGLRDDALALFNQMRQASVVLDEFTLATILGVCSGQNYAATGELLHGY 400

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGS-------------------------------VDYG 101
            +K G+D    VGN ++TMY +CG                                +D  
Sbjct: 401 AIKSGMDSFVPVGNAIITMYARCGDTEKASLAFRSMPLRDTISWTAMITAFSQNGDIDRA 460

Query: 102 RKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL 161
           R+ FD +PE+ +ITWN+M+S Y Q+G +   ++LY  M+S  V PD VTF   + +CA L
Sbjct: 461 RQCFDMMPERNVITWNSMLSTYIQHGFSEEGMKLYVLMRSKAVKPDWVTFATSIRACADL 520

Query: 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
               +G +V   +   G  S+  + N+++ MY+RCG +K+AR +FD +  K ++SW A++
Sbjct: 521 ATIKLGTQVVSHVTKFGLSSDVSVANSIVTMYSRCGQIKEARKVFDSIHVKNLISWNAMM 580

Query: 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281
             +  +G G  A++ +++ML++  +PD  ++V+VLS                        
Sbjct: 581 AAFAQNGLGNKAIETYEDMLRTECKPDHISYVAVLS------------------------ 616

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG 341
                      DLLGRAG L++A  LI+ M  +P+  VWGALLGAC+IH +  LAE A  
Sbjct: 617 -----------DLLGRAGLLDQAKNLIDGMPFKPNATVWGALLGACRIHHDSILAETAAK 665

Query: 342 KVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFM 401
           K+++L   ++G YVLL+NIY+E+  L+ +  +R +M+ + ++K PG S++E+  RVH+F 
Sbjct: 666 KLMELNVEDSGGYVLLANIYAESGELENVADMRKLMKVKGIRKSPGCSWIEVDNRVHVFT 725

Query: 402 VGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINT 461
           V + +H Q  E+Y    KLE ++++ + T R     S  H    + HSEKLA AFG+++ 
Sbjct: 726 VDETSHPQINEVYV---KLEEMMKKIEDTGRYVSIVSCAH-RSQKYHSEKLAFAFGLLSL 781

Query: 462 SPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            P   I V KNLR+C DCHL IKL+S +  R+ I+RD  RFHHFK GFCSC+DYW
Sbjct: 782 PPWMPIQVTKNLRVCNDCHLVIKLLSLVTSRELIMRDGFRFHHFKDGFCSCRDYW 836



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 170/389 (43%), Gaps = 35/389 (8%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N LIS +         +S F +M   G + N +T   +L  C     L  G   H  
Sbjct: 240 VSWNTLISVFSQYGHGIRCLSTFVEMCNLGFKPNFMTYGSVLSACASISDLKWGAHLHAR 299

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++    LD  +G+ L+ MY KCG +   R++F+ + E+  ++W  +ISG AQ GL    
Sbjct: 300 ILRMEHSLDAFLGSGLIDMYAKCGCLALARRVFNSLGEQNQVSWTCLISGVAQFGLRDDA 359

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+ +M+   V  D  T   +L  C+     + G  +      +G  S   + NA+I M
Sbjct: 360 LALFNQMRQASVVLDEFTLATILGVCSGQNYAATGELLHGYAIKSGMDSFVPVGNAIITM 419

Query: 193 YARCGNLKK-------------------------------ARAIFDGMPRKTVVSWTAII 221
           YARCG+ +K                               AR  FD MP + V++W +++
Sbjct: 420 YARCGDTEKASLAFRSMPLRDTISWTAMITAFSQNGDIDRARQCFDMMPERNVITWNSML 479

Query: 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281
             Y  HG  E  ++L+  M    ++PD   F + + AC+       G +    +  K+GL
Sbjct: 480 STYIQHGFSEEGMKLYVLMRSKAVKPDWVTFATSIRACADLATIKLGTQVVSHV-TKFGL 538

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG 341
                    +V +  R GQ+ EA ++ +S+ V+ +   W A++ A   +     A   + 
Sbjct: 539 SSDVSVANSIVTMYSRCGQIKEARKVFDSIHVK-NLISWNAMMAAFAQNGLGNKAIETYE 597

Query: 342 KVIKLE--PMNTGYYVLLSNIYSEARNLD 368
            +++ E  P +  Y  +LS++   A  LD
Sbjct: 598 DMLRTECKPDHISYVAVLSDLLGRAGLLD 626



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 184/420 (43%), Gaps = 40/420 (9%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM-REQGVEI---NSVTMLCLLPI 56
           +FDE       +V +  +ISGY  N L + ++  F  M R+   +I   +  +  C +  
Sbjct: 92  LFDEMPHIVRDSVSWTTMISGYCQNGLPAHSIKTFMSMLRDSNHDIQNCDPFSYTCTMKA 151

Query: 57  CVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVD----------------- 99
           C         +  H   +K  L     + N L+ MY+KCG++                  
Sbjct: 152 CGCLASTRFALQLHAHVIKLHLGAQTCIQNSLVDMYIKCGAITLAETVFLNIESPSLFCW 211

Query: 100 ----YGRK----------LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
               YG            +F ++PE+  ++WN +IS ++Q G     L  + EM +LG  
Sbjct: 212 NSMIYGYSQLYGPYEALHVFTRMPERDHVSWNTLISVFSQYGHGIRCLSTFVEMCNLGFK 271

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P+ +T+  VLS+CA +     G  +  +I       + FL + LI+MYA+CG L  AR +
Sbjct: 272 PNFMTYGSVLSACASISDLKWGAHLHARILRMEHSLDAFLGSGLIDMYAKCGCLALARRV 331

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           F+ +  +  VSWT +I G    G  + A+ LF++M ++ +  D     ++L  CS     
Sbjct: 332 FNSLGEQNQVSWTCLISGVAQFGLRDDALALFNQMRQASVVLDEFTLATILGVCSGQNYA 391

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
             G E  +G   K G+         ++ +  R G   +A     SM +  D   W A++ 
Sbjct: 392 ATG-ELLHGYAIKSGMDSFVPVGNAIITMYARCGDTEKASLAFRSMPLR-DTISWTAMIT 449

Query: 326 ACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKD 385
           A   + +++ A   F  + +   +   +  +LS       + +G M++ ++MR + +K D
Sbjct: 450 AFSQNGDIDRARQCFDMMPERNVIT--WNSMLSTYIQHGFSEEG-MKLYVLMRSKAVKPD 506



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 127/331 (38%), Gaps = 72/331 (21%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPE--KGLITWNAMISGYAQNGLATHVLELYREM---- 139
           N ++  +   G +     LFD++P   +  ++W  MISGY QNGL  H ++ +  M    
Sbjct: 74  NTMLHAFFDSGRMREAENLFDEMPHIVRDSVSWTTMISGYCQNGLPAHSIKTFMSMLRDS 133

Query: 140 -KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGN 198
              +  C D  ++   + +C  L +    L++   +     G+   + N+L++MY +CG 
Sbjct: 134 NHDIQNC-DPFSYTCTMKACGCLASTRFALQLHAHVIKLHLGAQTCIQNSLVDMYIKCGA 192

Query: 199 LKKARAIF-------------------------------DGMPRKTVVSWTAIIGGYGIH 227
           +  A  +F                                 MP +  VSW  +I  +  +
Sbjct: 193 ITLAETVFLNIESPSLFCWNSMIYGYSQLYGPYEALHVFTRMPERDHVSWNTLISVFSQY 252

Query: 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS-----------HAGL--TDKGLEYFYG 274
           GHG   +  F EM   G +P+   + SVLSAC+           HA +   +  L+ F G
Sbjct: 253 GHGIRCLSTFVEMCNLGFKPNFMTYGSVLSACASISDLKWGAHLHARILRMEHSLDAFLG 312

Query: 275 -----MKNKYGL------------QPGPEHYTCMVDLLGRAGQLNEALELIESML---VE 314
                M  K G             +     +TC++  + + G  ++AL L   M    V 
Sbjct: 313 SGLIDMYAKCGCLALARRVFNSLGEQNQVSWTCLISGVAQFGLRDDALALFNQMRQASVV 372

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIK 345
            D      +LG C         EL  G  IK
Sbjct: 373 LDEFTLATILGVCSGQNYAATGELLHGYAIK 403



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 5/149 (3%)

Query: 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
           G+  +  ++  Q+  +G  ++ FL N L++MY+ CG +  A  +F       + +W  ++
Sbjct: 18  GSPPIARKLHAQLILSGLDASLFLLNNLLHMYSNCGMVDDAFRVFREANHANIFTWNTML 77

Query: 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM--KNKY 279
             +   G    A  LFDEM    I  D  ++ +++S     GL    ++ F  M   + +
Sbjct: 78  HAFFDSGRMREAENLFDEM--PHIVRDSVSWTTMISGYCQNGLPAHSIKTFMSMLRDSNH 135

Query: 280 GLQP-GPEHYTCMVDLLGRAGQLNEALEL 307
            +Q   P  YTC +   G       AL+L
Sbjct: 136 DIQNCDPFSYTCTMKACGCLASTRFALQL 164


>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 604

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 193/507 (38%), Positives = 299/507 (58%), Gaps = 5/507 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           YN +I G V +  + EA+ L+ +M E+G+E ++ T   +L  C   G L  G+  H    
Sbjct: 98  YNTMIRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQIHAHVF 157

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K GL+ D  V N L+ MY KCG++++   +F+Q+ EK + +W+++I  +A   +    L 
Sbjct: 158 KAGLEGDVFVQNGLINMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAHASVEMWHECLM 217

Query: 135 LYREMKSLGVC-PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
           L  +M   G    +    V  LS+C HLG+ + G  +   +  N    N  +  +LI+MY
Sbjct: 218 LLGDMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRNISELNVAVKTSLIDMY 277

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
            + G+L+K   +F  M +K   S+T II G  IHG G  A+ +F +ML+ G+ PD   +V
Sbjct: 278 VKSGSLEKGLCVFQNMAQKNRYSYTVIITGLAIHGRGREALSVFSDMLEEGLAPDDVVYV 337

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
            VLSACSHAGL ++GL+ F  ++ ++ ++P  +HY CMVDL+GRAG L  A +LI+SM +
Sbjct: 338 GVLSACSHAGLVNEGLQCFNRLQFEHKIKPTIQHYGCMVDLMGRAGMLKGAYDLIKSMPI 397

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
           +P+  VW +LL ACK+H N+E+ E+A   + KL   N G Y++L+N+Y+ A+    + R+
Sbjct: 398 KPNDVVWRSLLSACKVHHNLEIGEIAAENIFKLNQHNPGDYLVLANMYARAKKWADVARI 457

Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS 433
           R  M E+ L + PG+S VE    V+ F+  D++  Q   IY M+ ++E  ++    T   
Sbjct: 458 RTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQMEWQLKFEGYTPDM 517

Query: 434 DQ----KNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKI 489
            Q     + +E     + HS+KLAIAF +I TS G+ I + +N+R+C DCH + K +S I
Sbjct: 518 SQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSRIRISRNIRMCNDCHTYTKFISVI 577

Query: 490 VDRQFIVRDATRFHHFKSGFCSCKDYW 516
            +R+  VRD  RFHHFK G CSCKDYW
Sbjct: 578 YEREITVRDRNRFHHFKDGTCSCKDYW 604



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 133/301 (44%), Gaps = 50/301 (16%)

Query: 70  HCICVKFGLDLDFSVGNCLMTM--YVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
           H   +K GL  D   G+ L+      + GS++Y   +F Q+ E G   +N MI G   + 
Sbjct: 50  HAHILKLGLFYDSFCGSNLVATCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSM 109

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
                L LY EM   G+ PD  T+  VL +C+ LGA   G+++   +   G   + F+ N
Sbjct: 110 NLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQIHAHVFKAGLEGDVFVQN 169

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI-R 246
            LINMY +CG ++ A  +F+ M  K+V SW++IIG +         + L  +M   G  R
Sbjct: 170 GLINMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHR 229

Query: 247 PDGTAFVSVLSACSH-----------------------------------AGLTDKGLEY 271
            + +  VS LSAC+H                                   +G  +KGL  
Sbjct: 230 AEESILVSALSACTHLGSPNFGRCIHGILLRNISELNVAVKTSLIDMYVKSGSLEKGLCV 289

Query: 272 FYGM--KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE---PDGAVWGALLGA 326
           F  M  KN+Y        YT ++  L   G+  EAL +   ML E   PD  V+  +L A
Sbjct: 290 FQNMAQKNRYS-------YTVIITGLAIHGRGREALSVFSDMLEEGLAPDDVVYVGVLSA 342

Query: 327 C 327
           C
Sbjct: 343 C 343


>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
 gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
          Length = 745

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 193/510 (37%), Positives = 289/510 (56%), Gaps = 7/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+I+ Y L     +A SLF +M   G   +  T   +L  C  P  L  G   H  
Sbjct: 237 VSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVR 296

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               G D DF++ N L++M+ +CGS++  R+ F  + +K L  WN M++ YAQ       
Sbjct: 297 ITARGFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDA 356

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L LY+ M   G  PD  TF  V+ SCA LGA   G  + +   + GF  +  L  AL+NM
Sbjct: 357 LFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTALVNM 416

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG+L  A+  FDG+  K VVSW+A+I     HGH E A++L   M   GI  +    
Sbjct: 417 YAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTA 476

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            SVL ACSH G   +G++YF G+   +G++   E+    +DLLGRAG L EA  ++ +M 
Sbjct: 477 SSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAGWLKEAEHVLHTMP 536

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            +        LLG CK+H +V   +    +++ LEP N G YVLL+N+Y+ A   D + +
Sbjct: 537 FKVSFVALVTLLGGCKVHGDVRRGKALTKRIVALEPENPGSYVLLNNMYAAAGRWDDVAK 596

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           +R  MR++ +K+  G S +E + +++ F VGD ++ + +EI   L++L + ++E +G   
Sbjct: 597 LRRYMRKKGVKRQTGCSSIEYRDKIYEFSVGDTSNPRNLEIRAELERLYSRMKEEEGYV- 655

Query: 433 SDQKNSEEHLNDT------EVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
            D ++    ++D       + HSEK+A+ FG+I + PG+ + ++KNLR+C DCH   KL 
Sbjct: 656 PDTRDVFHDVSDDKKEELLKFHSEKMAMGFGLITSPPGSTLRIIKNLRVCSDCHTVGKLA 715

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SKI  R+ IVRD TRFHHF+ G CSC DYW
Sbjct: 716 SKITGRRIIVRDGTRFHHFEGGICSCGDYW 745



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 157/324 (48%), Gaps = 2/324 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           +   A+I  YV +     A+  + KMR QG+E ++ T   +L  C  P +L  G   H  
Sbjct: 136 ISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGACSSPDFLLDGKHIHKH 195

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++     + SV N L+TMY KCGS+   + LF  +  K +++WNAMI+ Y   G     
Sbjct: 196 ILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDA 255

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
             L+  M +LG  PD  TF  +L +CA       G  +  +I A GF  +  + N LI+M
Sbjct: 256 FSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISM 315

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           + RCG+L+ AR  F  + +K + +W  ++  Y     G+ A+ L+  ML  G  PD   F
Sbjct: 316 FTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTF 375

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            SV+ +C+  G   +G ++ +      G +      T +V++  + G L +A +  +  +
Sbjct: 376 SSVVDSCASLGALREG-KFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDG-I 433

Query: 313 VEPDGAVWGALLGACKIHKNVELA 336
              D   W A++ A   H + E A
Sbjct: 434 SNKDVVSWSAMIAASAQHGHAEEA 457



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 161/338 (47%), Gaps = 27/338 (7%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD  IK  +    ++ L+  YV N++  EA+ ++ +M  + + I++ T+  +L  C   
Sbjct: 24  VFDR-IKQRN-AFSWSILVECYVQNAMYQEALEVYKEMVRKEISIDAYTLSSVLAACTKL 81

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV-PEKGLITWNAM 119
             +  G        + G + D  V   L+ ++ KCG ++    +F  +   + +I+  AM
Sbjct: 82  LDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTAM 141

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           I  Y ++G     L+ Y +M+S G+ PDA T+  +L +C+       G  + + I  +  
Sbjct: 142 IGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGACSSPDFLLDGKHIHKHILESKH 201

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             N  + NALI MYA+CG+LK ++++F  M  K VVSW A+I  Y ++GH + A  LF  
Sbjct: 202 FGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHR 261

Query: 240 MLKSGIRPDGTAFVSVLSACS-----------HAGLTDKGLEYFYGMKNKYGLQPGPEHY 288
           M   G  PD   F S+L AC+           H  +T +G +  + M+N           
Sbjct: 262 MCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNN---------- 311

Query: 289 TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
             ++ +  R G L  A     S+  +  GA W  +L A
Sbjct: 312 --LISMFTRCGSLESARRYFYSIEKKELGA-WNTMLAA 346



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 155/308 (50%), Gaps = 18/308 (5%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140
           D  + N ++ MY KC S +  R++FD++ ++   +W+ ++  Y QN +    LE+Y+EM 
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMV 60

Query: 141 SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
              +  DA T   VL++C  L     G  V+++ +  GF  +  +  +LI+++A+CG L+
Sbjct: 61  RKEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLE 120

Query: 201 KARAIFDGM-PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC 259
           +A ++F  M   + ++S TA+IG Y  HG  ++A+  + +M   G+ PD   + ++L AC
Sbjct: 121 EAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGAC 180

Query: 260 SHAGLTDKGLEYFYGMKNKYGLQPGPEHY------TCMVDLLGRAGQLNEALELIESMLV 313
           S       G        +K+ L+   +H+        ++ +  + G L ++  L  +M V
Sbjct: 181 SSPDFLLDGKHI-----HKHILE--SKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDV 233

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKL--EPMNTGYYVLLSNIYSEARNLDG-I 370
           + D   W A++ A  ++ + + A   F ++  L   P    +  +L    S  R  DG +
Sbjct: 234 K-DVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRM 292

Query: 371 MRVRMMMR 378
           + VR+  R
Sbjct: 293 LHVRITAR 300


>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1111

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 185/485 (38%), Positives = 286/485 (58%), Gaps = 11/485 (2%)

Query: 40   EQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVD 99
            E G   N VT L ++  CV  G    G+C H + +K G+  +  V N LM +Y K G + 
Sbjct: 630  EVGFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLI 689

Query: 100  YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
               KLF+ +  K L++WN MI  + QNGLA   L  +   + +G+ PD  TF+ VL  C 
Sbjct: 690  SSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCE 749

Query: 160  HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
             +G   +   +   I   GF +N  +  AL+++YA+ G L+ +  +F  +     ++WTA
Sbjct: 750  DIGVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTA 809

Query: 220  IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279
            ++  Y  HG+G  A++ F+ M+  G+ PD   F  +L+ACSH+GL ++G  YF  M  +Y
Sbjct: 810  MLAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRY 869

Query: 280  GLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELA 339
             ++P  +HY+CMVDL+GR+G L +A  LI+ M +EP   VWGALLGAC+++K+ +L   A
Sbjct: 870  RIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKA 929

Query: 340  FGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHL 399
              ++ +LEP +   Y++LSNIYS +       R+R +M+++ L +  GYSY+E   ++H 
Sbjct: 930  AKRLFELEPRDGRNYIMLSNIYSASGLWKDASRIRNLMKQKGLVRASGYSYIEHGNKIHK 989

Query: 400  FMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS--------DQKNSEEHLNDTEVHSEK 451
            F+VGD +H ++ +I + L ++   ++   G K          D+   EE +N    HSEK
Sbjct: 990  FVVGDWSHPESEKIQKKLKEIRKKMKSELGFKSRTEFVLHDVDEDVKEEMINQ---HSEK 1046

Query: 452  LAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCS 511
            +A+AFG++  SP   I++ KNLRICGDCH   K +S I  R+ I+RD+ RFHHF  G CS
Sbjct: 1047 IAMAFGLLVISPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLEGSCS 1106

Query: 512  CKDYW 516
            C+DYW
Sbjct: 1107 CRDYW 1111



 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 191/545 (35%), Positives = 302/545 (55%), Gaps = 39/545 (7%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMRE--QGVEINSVTMLCLLPICV 58
           + D S K T   +  N++I  +  + +  ++   + ++     G++ ++ T+  L+  C 
Sbjct: 70  ILDRSDKPTLFAL--NSMIRAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQACT 127

Query: 59  DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYV------------------------- 93
             G    G+  H + ++ G D D  V   L+++Y                          
Sbjct: 128 GLGMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFVCRTA 187

Query: 94  ------KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
                 +CG V + RKLF+ +PEK  I WNAMISGYAQ G +   L L+  M+  GV  +
Sbjct: 188 MVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEGVKVN 247

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
            V+ + VLS+C  LGA   G      I+ N       L   L+++YA+CG++ KA  +F 
Sbjct: 248 GVSMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLGTTLVDLYAKCGDMDKAMEVFW 307

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
           GM  K V +W++ + G  ++G GE  ++LF  M + G+ P+   FVSVL  CS  G  D+
Sbjct: 308 GMEEKNVYTWSSALNGLAMNGFGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDE 367

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           G ++F  M+N++G++P  +HY C+VDL  RAG+L +A+ +I+ M ++   AVW +LL A 
Sbjct: 368 GQKHFDSMRNEFGIEPQLDHYGCLVDLYARAGRLEDAVSIIQQMPMKAHAAVWSSLLHAS 427

Query: 328 KIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPG 387
           +++KN+EL  LA  K+++LE  N G YVLLSNIY+++ + D +  VR  M+ + ++K PG
Sbjct: 428 RMYKNLELGVLASKKMLELETSNHGAYVLLSNIYADSDDWDNVSHVRQSMKSKGVRKQPG 487

Query: 388 YSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ----EHDGTKRSDQKNSEEHLN 443
            S +E+ G VH F VGD++H +  EI  +   +   ++    + D T      + EE  +
Sbjct: 488 CSVMEVNGEVHEFFVGDKSHPKYNEIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKED 547

Query: 444 DTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFH 503
              +HSEK AIAFGI++      I ++KNLR+CGDCH    ++SKI +R+ IVRD  RFH
Sbjct: 548 ALCLHSEKAAIAFGIMSLKADVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFH 607

Query: 504 HFKSG 508
           HFK G
Sbjct: 608 HFKDG 612



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 120/263 (45%), Gaps = 41/263 (15%)

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG--VCPDAVTFVGVL 155
           +DY  ++ D+  +  L   N+MI  + ++ +     + Y  + S G  + PD  T   ++
Sbjct: 64  LDYANQILDRSDKPTLFALNSMIRAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLV 123

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA--------------------- 194
            +C  LG    GL+V       GF ++P +   LI++YA                     
Sbjct: 124 QACTGLGMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFV 183

Query: 195 ----------RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
                     RCG++  AR +F+GMP K  ++W A+I GY   G    A+ LF  M   G
Sbjct: 184 CRTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEG 243

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGL---EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301
           ++ +G + +SVLSAC+  G  D+G     Y    K K  ++ G    T +VDL  + G +
Sbjct: 244 VKVNGVSMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLG----TTLVDLYAKCGDM 299

Query: 302 NEALELIESMLVEPDGAVWGALL 324
           ++A+E+   M  E +   W + L
Sbjct: 300 DKAMEVFWGM-EEKNVYTWSSAL 321



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 123/269 (45%), Gaps = 5/269 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +I  ++ N L  E ++ F   R  G++ +  T L +L +C D G + L    H +
Sbjct: 704 VSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGL 763

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +  G + +  +   L+ +Y K G ++    +F ++     + W AM++ YA +G     
Sbjct: 764 IMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDA 823

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN--NALI 190
           ++ +  M   G+ PD VTF  +L++C+H G    G     +  +  +   P L+  + ++
Sbjct: 824 IKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEG-RYYFETMSKRYRIEPRLDHYSCMV 882

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++  R G L+ A  +   MP +     W A++G   ++   ++  +    + +   R DG
Sbjct: 883 DLMGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPR-DG 941

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNK 278
             ++ + +  S +GL          MK K
Sbjct: 942 RNYIMLSNIYSASGLWKDASRIRNLMKQK 970


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 193/509 (37%), Positives = 292/509 (57%), Gaps = 5/509 (0%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWL-GMCCHC 71
            V +NALI G+  N   +EAV  +  +RE+G+  N +TM+ +L  C  P  L   GM  H 
Sbjct: 1216 VTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHA 1275

Query: 72   ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              V  G + D  V N L+TMY KCG ++    +FD +  K  ITWNAM++  A +G    
Sbjct: 1276 HIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEE 1335

Query: 132  VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
             L+++ EM+++GV  D  +F G L++ A+L     G ++   +   GF S+  + NA ++
Sbjct: 1336 ALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMD 1395

Query: 192  MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
            MY +CG +     +      ++ +SW  +I  +  HG  + A + F EMLK G +PD   
Sbjct: 1396 MYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVT 1455

Query: 252  FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            FVS+LSAC+H GL D+GL Y+  M  ++G+ PG EH  C++DLLGR+G+L+ A   I+ M
Sbjct: 1456 FVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEM 1515

Query: 312  LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
             V P+   W +LL AC+IH N+ELA      +++L+P +   YVL SN+ + +   + + 
Sbjct: 1516 PVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVE 1575

Query: 372  RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH---- 427
             +R  M    +KK P  S+V+LK +VH F +G++ H Q   I   L +L  + +E     
Sbjct: 1576 NLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEAGYVP 1635

Query: 428  DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
            D +      + E+   +   HSE+LA+AFG+INT   + + + KNLR+CGDCH   K VS
Sbjct: 1636 DTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGDCHSVYKFVS 1695

Query: 488  KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
             IV R+ ++RD  RFHHF  G CSC DYW
Sbjct: 1696 GIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1724



 Score =  244 bits (624), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 135/385 (35%), Positives = 214/385 (55%), Gaps = 9/385 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +NA+I GY +     ++  +F  M   G+  +  T+  +L    + G L +    H I
Sbjct: 198 VSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGI 257

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL-ATH 131
             + G      V   L+  Y K GS+   + L   + +K L +  A+I+GYA  G+ +  
Sbjct: 258 ITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVD 317

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP----FLNN 187
            L+L++EM  + +  D V    +L+ CA+L + ++G     QI A      P     + N
Sbjct: 318 ALDLFKEMNQMNIGMDDVILCSMLNICANLASFALG----TQIHAFALKYQPSYDVAMGN 373

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           ALI+MYA+ G ++ A+  FD M  K V+SWT++I GY  HG+G +AV L+ +M   G +P
Sbjct: 374 ALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKP 433

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           +   F+S+L ACSH GLT +G E F  M NKY ++P  EHY+CMVDL  R G L EA  L
Sbjct: 434 NDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNL 493

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNL 367
           +  + ++ + ++WGA+LGA  I+  + L + A   +  ++P N+  YV+L++IYS A   
Sbjct: 494 LCKIDIKHNASLWGAILGASSIYGYMSLGKEAASNLFNMQPENSVNYVVLASIYSAAGLW 553

Query: 368 DGIMRVRMMMRERRLKKDPGYSYVE 392
           D   ++R +M ER  KK+ GYS+ +
Sbjct: 554 DDAWKIRKLMEERSTKKNAGYSFFQ 578



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 175/339 (51%), Gaps = 7/339 (2%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
            + +N++++ YV +    + + +  ++ + G  +N VT    L  C +P  L      H +
Sbjct: 1115 ISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHAL 1174

Query: 73   CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             +  G      VGN L+TMY K G +   +K+   +P+   +TWNA+I G+A+N      
Sbjct: 1175 IIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEA 1234

Query: 133  LELYREMKSLGVCPDAVTFVGVLSSCA---HLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
            ++ Y+ ++  G+  + +T V VL +C+    L  H  G+ +   I   GF S+ ++ N+L
Sbjct: 1235 VKAYKLIREKGIPANYITMVSVLGACSAPDDLLKH--GMPIHAHIVLTGFESDDYVKNSL 1292

Query: 190  INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
            I MYA+CG+L  +  IFDG+  K+ ++W A++     HG GE A+++F EM   G+  D 
Sbjct: 1293 ITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQ 1352

Query: 250  TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
             +F   L+A ++  + ++G +  +G+  K G +         +D+ G+ G++++ L+++ 
Sbjct: 1353 FSFSGGLAATANLAVLEEG-QQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLP 1411

Query: 310  SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEP 348
               +      W  L+ A   H   + A   F +++KL P
Sbjct: 1412 QP-INRSRLSWNILISAFARHGCFQKARETFHEMLKLGP 1449



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 123/236 (52%), Gaps = 3/236 (1%)

Query: 28  VSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNC 87
           ++EA+ L   +      ++    L +L +C+D      G   H   +  G   D  +   
Sbjct: 14  LAEALKL---LSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTK 70

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L+  YVK G V   R +FD +PE+ +++W AM+SGY+QNG       L+ +M+  GV  +
Sbjct: 71  LIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKAN 130

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
             T+   L +C  L    +G++V+  IQ   F  N F+ +AL++ +++CG ++ A  +F 
Sbjct: 131 QFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFG 190

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG 263
            M  + VVSW A+IGGY + G  + +  +F  ML+ G+ PD     SVL A +  G
Sbjct: 191 TMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGG 246



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 150/323 (46%), Gaps = 11/323 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A++SGY  N    +A  LF  MR  GV+ N  T    L  C     L +G+     
Sbjct: 97  VSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGC 156

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K     +  V + L+  + KCG ++    LF  + E+ +++WNAMI GYA  G A   
Sbjct: 157 IQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDS 216

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
             ++R M   G+ PD  T   VL + A  G   +  ++   I   G+GS   +   LIN 
Sbjct: 217 FCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINA 276

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV-AVQLFDEMLKSGIRPDGTA 251
           YA+ G+L+ A+ +  GM +K + S TA+I GY   G   V A+ LF EM +  I  D   
Sbjct: 277 YAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVI 336

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCM----VDLLGRAGQLNEALEL 307
             S+L+ C++      G +      + + L+  P +   M    +D+  ++G++ +A   
Sbjct: 337 LCSMLNICANLASFALGTQI-----HAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRA 391

Query: 308 IESMLVEPDGAVWGALLGACKIH 330
            + M  E +   W +L+     H
Sbjct: 392 FDEM-EEKNVISWTSLISGYAKH 413



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 161/331 (48%), Gaps = 6/331 (1%)

Query: 1    VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
            VFDE       +  ++ ++SGYV   L  EAV LF +M   GVE N   +  L+  C   
Sbjct: 801  VFDEMRHRNEAS--WSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRS 858

Query: 61   GYLW-LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
            GY+   G   H   VK G+  D  VG  L+  Y   G V   +KLF+++P+  +++W ++
Sbjct: 859  GYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSL 918

Query: 120  ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
            + GY+ +G    VL +Y+ M+  GV  +  TF  V SSC  L    +G +V   I   GF
Sbjct: 919  MVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGF 978

Query: 180  GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
              +  + N+LI+M++   ++++A  +FD M    ++SW A+I  Y  HG    +++ F  
Sbjct: 979  EDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHW 1038

Query: 240  MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
            M       + T   S+LS CS       G    +G+  K GL         ++ L   AG
Sbjct: 1039 MRHLHNETNSTTLSSLLSVCSSVDNLKWG-RGIHGLVVKLGLDSNVCICNTLLTLYSEAG 1097

Query: 300  QLNEALELIESMLVEPDGAVWGALLGACKIH 330
            +  +A EL+   + E D   W +++ AC + 
Sbjct: 1098 RSEDA-ELVFQAMTERDLISWNSMM-ACYVQ 1126



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 169/362 (46%), Gaps = 29/362 (8%)

Query: 10   HLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPIC--VDPGYLWLGM 67
            H  V + +L+ GY  +    E ++++ +MR++GV  N  T   +   C  ++   L   +
Sbjct: 910  HNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQV 969

Query: 68   CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
              H I  ++G +   SV N L++M+    SV+    +FD + E  +I+WNAMIS YA +G
Sbjct: 970  LGHII--QYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHG 1027

Query: 128  LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
            L    L  +  M+ L    ++ T   +LS C+ +     G  +   +   G  SN  + N
Sbjct: 1028 LCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICN 1087

Query: 188  ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
             L+ +Y+  G  + A  +F  M  + ++SW +++  Y   G     +++  E+L+ G   
Sbjct: 1088 TLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVM 1147

Query: 248  DGTAFVSVLSACS-----------HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
            +   F S L+ACS           HA +   G   F  + N             +V + G
Sbjct: 1148 NHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGN------------ALVTMYG 1195

Query: 297  RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVL 356
            + G + EA +++++M  +PD   W AL+G    ++    A  A+ K+I+ + +   Y  +
Sbjct: 1196 KLGMMMEAKKVLQTM-PQPDRVTWNALIGGHAENEEPNEAVKAY-KLIREKGIPANYITM 1253

Query: 357  LS 358
            +S
Sbjct: 1254 VS 1255



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 129/267 (48%), Gaps = 5/267 (1%)

Query: 66   GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
            G   H  C+   ++L     N L+ MY K G++++ R +FD++  +   +W+ M+SGY +
Sbjct: 763  GKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVR 822

Query: 126  NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHS-VGLEVEQQIQANGFGSNPF 184
             GL    + L+ +M  LGV P+      ++++C+  G  +  G +V   +   G   + +
Sbjct: 823  VGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVY 882

Query: 185  LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
            +  AL++ Y   G +  A+ +F+ MP   VVSWT+++ GY   G+    + ++  M + G
Sbjct: 883  VGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEG 942

Query: 245  IRPDGTAFVSVLSACSHAGLTDKGLEY-FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
            +  +   F +V S+C    L D+ L Y   G   +YG +        ++ +      + E
Sbjct: 943  VSGNQNTFATVTSSCGL--LEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEE 1000

Query: 304  ALELIESMLVEPDGAVWGALLGACKIH 330
            A  + + M  E D   W A++ A   H
Sbjct: 1001 ACYVFDHM-NECDIISWNAMISAYAHH 1026



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 99/205 (48%), Gaps = 5/205 (2%)

Query: 129 ATHVLELYREMKSLGVCP---DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
           A ++  L   +K L   P   D   ++ +L  C    A   G  +   +  NGFGS+  L
Sbjct: 8   ACNLGRLAEALKLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHL 67

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
           N  LI  Y + G++  AR +FDGMP ++VVSWTA++ GY  +G  E A  LF +M   G+
Sbjct: 68  NTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGV 127

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
           + +   + S L AC+     D G++   G   K          + +VD   + G++ +A 
Sbjct: 128 KANQFTYGSALRACTSLRCLDMGIQ-VQGCIQKGRFVENLFVKSALVDFHSKCGKMEDAS 186

Query: 306 ELIESMLVEPDGAVWGALLGACKIH 330
            L  +M+ E D   W A++G   + 
Sbjct: 187 YLFGTMM-ERDVVSWNAMIGGYAVQ 210


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 183/509 (35%), Positives = 295/509 (57%), Gaps = 6/509 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +  +I+GY  N    EA++LF K++ +G++++ + +  +L  C            H  
Sbjct: 416 ISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGY 475

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K  L  D  + N ++ +Y + G +DY R+ F+ +  K +++W +MI+    NGL    
Sbjct: 476 VFKRDL-ADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEA 534

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           LEL+  +K   + PD++  +  LS+ A+L +   G E+   +   GF     + ++L++M
Sbjct: 535 LELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDM 594

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA CG ++ +R +F  + ++ ++ WT++I   G+HG G  A+ LF +M    + PD   F
Sbjct: 595 YACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITF 654

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +++L ACSH+GL  +G  +F  MK  Y L+P PEHY CMVDLL R+  L EA   + +M 
Sbjct: 655 LALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMP 714

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           ++P   +W ALLGAC IH N EL ELA  ++++ +  N+G Y L+SNI++     + +  
Sbjct: 715 IKPSSEIWCALLGACHIHSNKELGELAAKELLQSDTENSGKYALISNIFAADGRWNDVEE 774

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDG--- 429
           VR+ M+   LKK+PG S++E+  ++H FM  D++H QT +IY  L +   L+++  G   
Sbjct: 775 VRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLEKKGGYIA 834

Query: 430 -TKRSDQKNSEEHLNDTEV-HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
            TK      SEE        HSE+LA+ +G++ T  GT I + KNLRIC DCH F K+ S
Sbjct: 835 QTKFVFHNVSEEEKTQMLYGHSERLALGYGLLVTPKGTCIRITKNLRICDDCHTFFKIAS 894

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           ++  R  +VRDA RFHHF+ G CSC D+W
Sbjct: 895 EVSQRPLVVRDANRFHHFERGLCSCGDFW 923



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 108/373 (28%), Positives = 181/373 (48%), Gaps = 7/373 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD  +     TV +N++IS +V      EA+SLF +M+E GV  N+ T +  L    DP
Sbjct: 202 LFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDP 261

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
            ++ LGM  H   +K     D  V N L+ MY KCG ++   ++F+ +  +  ++WN ++
Sbjct: 262 SFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLL 321

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SG  QN L +  L  +R+M++ G  PD V+ + ++++    G    G EV      NG  
Sbjct: 322 SGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLD 381

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           SN  + N L++MYA+C  +K     F+ M  K ++SWT II GY  +     A+ LF ++
Sbjct: 382 SNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKV 441

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKG-LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
              G+  D     SVL ACS  GL  +  +   +G   K  L         +V++ G  G
Sbjct: 442 QVKGMDVDPMMIGSVLRACS--GLKSRNFIREIHGYVFKRDLADIMLQ-NAIVNVYGEVG 498

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
            ++ A    ES +   D   W +++  C +H  + +  L     +K   +      ++S 
Sbjct: 499 HIDYARRAFES-IRSKDIVSWTSMITCC-VHNGLPVEALELFYSLKQTNIQPDSIAIISA 556

Query: 360 IYSEARNLDGIMR 372
           + + A NL  + +
Sbjct: 557 LSATA-NLSSLKK 568



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/274 (31%), Positives = 135/274 (49%), Gaps = 6/274 (2%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           LL +CV    L  G   H + +K  L    +    L+ MY KCGS+    K+FD++ E+ 
Sbjct: 52  LLDLCVAAKALPQGQQLHALLLKSHLSAFLATK--LVLMYGKCGSLRDAVKVFDEMSERT 109

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
           + +WNA++  +  +G     +ELY++M+ LGV  DA TF  VL +C  LG   +G E+  
Sbjct: 110 IFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHG 169

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG--MPRKTVVSWTAIIGGYGIHGHG 230
                G+G   F+ NALI MY +CG+L  AR +FDG  M ++  VSW +II  +   G+ 
Sbjct: 170 VAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNC 229

Query: 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC 290
             A+ LF  M + G+  +   FV+ L           G+   +G   K            
Sbjct: 230 LEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMG-IHGAVLKSNHFADVYVANA 288

Query: 291 MVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
           ++ +  + G++ +A  + ESML   D   W  LL
Sbjct: 289 LIAMYAKCGRMEDAGRVFESMLCR-DYVSWNTLL 321



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 150/300 (50%), Gaps = 7/300 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE  + T  +  +NAL+  +V +    EA+ L+  MR  GV I++ T   +L  C   
Sbjct: 101 VFDEMSERTIFS--WNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGAL 158

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV--PEKGLITWNA 118
           G   LG   H + VK G      V N L+ MY KCG +   R LFD +   ++  ++WN+
Sbjct: 159 GESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNS 218

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
           +IS +   G     L L+R M+ +GV  +  TFV  L          +G+ +   +  + 
Sbjct: 219 IISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSN 278

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
             ++ ++ NALI MYA+CG ++ A  +F+ M  +  VSW  ++ G   +     A+  F 
Sbjct: 279 HFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFR 338

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGR 297
           +M  SG +PD  + +++++A   +G   KG E + Y ++N  GL    +    +VD+  +
Sbjct: 339 DMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRN--GLDSNMQIGNTLVDMYAK 396


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 189/514 (36%), Positives = 306/514 (59%), Gaps = 19/514 (3%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           YN+++S  V +    EA  +  +M ++ V  +SVT + +L +C     L LG+  H   +
Sbjct: 197 YNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLL 256

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K GL  D  V + L+  Y KCG V   RK FD + ++ ++ W A+++ Y QNG     L 
Sbjct: 257 KTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLN 316

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+ +M+     P+  TF  +L++CA L A + G  +  +I  +GF ++  + NALINMY+
Sbjct: 317 LFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYS 376

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           + GN+  +  +F  M  + V++W A+I GY  HG G+ A+ +F +M+ +G  P+   F+ 
Sbjct: 377 KSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIG 436

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML-V 313
           VLSAC H  L  +G  YF  +  K+ ++PG EHYTCMV LLGRAG L+EA   +++   V
Sbjct: 437 VLSACVHLALVQEGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQV 496

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
           + D   W  LL AC IH+N  L +     VI+++P + G Y LLSN++++AR  DG++++
Sbjct: 497 KWDVVAWRTLLNACHIHRNYNLGKQITETVIQMDPHDVGTYTLLSNMHAKARKWDGVVKI 556

Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE------- 426
           R +M+ER +KK+PG S+++++   H+F+    NH ++ +I+  + +L  +++        
Sbjct: 557 RKLMKERNIKKEPGASWLDIRNNTHVFVSEGSNHPESTQIFEKVQQLLAMIKPLGYAPDV 616

Query: 427 ----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLF 482
               HD     + +  E +L+    HSEKLA+A+G++   P   I ++KNLR+C DCH+ 
Sbjct: 617 GVVLHD----VEDEQKEGYLSH---HSEKLALAYGLMKIPPPGPIRIIKNLRMCDDCHIA 669

Query: 483 IKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +KL+SK  +R  IVRDA RFHHF+ G C+C D+W
Sbjct: 670 VKLISKATNRLIIVRDANRFHHFREGLCTCNDHW 703



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 158/325 (48%), Gaps = 5/325 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICVD 59
           +FD  ++     V ++AL+ GY+    V E + LF  +        N      +L  C D
Sbjct: 83  LFDRMLQRN--VVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCAD 140

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
            G +  G  CH   +K GL L   V N L+ MY +C  VD   ++ D VP   + ++N++
Sbjct: 141 SGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSI 200

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           +S   ++G      ++ + M    V  D+VT+V VL  CA +    +GL++  Q+   G 
Sbjct: 201 LSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGL 260

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             + F+++ LI+ Y +CG +  AR  FDG+  + VV+WTA++  Y  +GH E  + LF +
Sbjct: 261 VFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTK 320

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M     RP+   F  +L+AC+       G +  +G     G +        ++++  ++G
Sbjct: 321 MELEDTRPNEFTFAVLLNACASLVALAYG-DLLHGRIVMSGFKNHLIVGNALINMYSKSG 379

Query: 300 QLNEALELIESMLVEPDGAVWGALL 324
            ++ +  +  +M+   D   W A++
Sbjct: 380 NIDSSYNVFSNMM-NRDVITWNAMI 403



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 114/242 (47%), Gaps = 5/242 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+++ Y+ N    E ++LF KM  +    N  T   LL  C     L  G   H  
Sbjct: 296 VAWTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGR 355

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            V  G      VGN L+ MY K G++D    +F  +  + +ITWNAMI GY+ +GL    
Sbjct: 356 IVMSGFKNHLIVGNALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQA 415

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           L ++++M S G CP+ VTF+GVLS+C HL     G     QI    F   P L +   ++
Sbjct: 416 LLVFQDMMSAGECPNYVTFIGVLSACVHLALVQEGFYYFDQIMKK-FDVEPGLEHYTCMV 474

Query: 191 NMYARCGNLKKARAIFDGMP--RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
            +  R G L +A          +  VV+W  ++    IH +  +  Q+ + +++      
Sbjct: 475 ALLGRAGLLDEAENFMKTTTQVKWDVVAWRTLLNACHIHRNYNLGKQITETVIQMDPHDV 534

Query: 249 GT 250
           GT
Sbjct: 535 GT 536



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 147/342 (42%), Gaps = 45/342 (13%)

Query: 79  DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYRE 138
           D D +  N L+ +Y KCG     RKLFD++ ++ +++W+A++ GY   G    VL L+R 
Sbjct: 58  DSDITQINSLINLYSKCGQSKCARKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRN 117

Query: 139 MKSL-GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG 197
           + SL    P+   F  VLS CA  G    G +    +  +G   + ++ NALI+MY+RC 
Sbjct: 118 LVSLDSAYPNEYIFTIVLSCCADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCF 177

Query: 198 NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257
           ++  A  I D +P   V S+ +I+      G    A Q+   M+   +  D   +VSVL 
Sbjct: 178 HVDSAMQILDTVPGDDVFSYNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLG 237

Query: 258 ACS-----------HAGLTDKGL------------------EYFYGMKNKYGLQP-GPEH 287
            C+           HA L   GL                  E     K   GL+      
Sbjct: 238 LCAQIRDLQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVA 297

Query: 288 YTCMVDLLGRAGQLNEALELIESMLVE---PDGAVWGALLGACKIHKNVELAELAFGKVI 344
           +T ++    + G   E L L   M +E   P+   +  LL AC       L  LA+G ++
Sbjct: 298 WTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNAC-----ASLVALAYGDLL 352

Query: 345 KLEPMNTGYY------VLLSNIYSEARNLDGIMRVRMMMRER 380
               + +G+         L N+YS++ N+D    V   M  R
Sbjct: 353 HGRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNVFSNMMNR 394


>gi|20197649|gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 472

 Score =  364 bits (935), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 187/484 (38%), Positives = 289/484 (59%), Gaps = 23/484 (4%)

Query: 44  EINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRK 103
           E     +L  LP+ + P  +      H   VK   +   +VG  L+  YVK G V+   K
Sbjct: 1   EFTYSVILTALPV-ISPSEV------HAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAK 53

Query: 104 LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163
           +F  + +K ++ W+AM++GYAQ G     ++++ E+   G+ P+  TF  +L+ CA   A
Sbjct: 54  VFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNA 113

Query: 164 HSVGLEVEQQIQANGFG------SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
            S+G    Q  Q +GF       S+  +++AL+ MYA+ GN++ A  +F     K +VSW
Sbjct: 114 -SMG----QGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSW 168

Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
            ++I GY  HG    A+ +F EM K  ++ DG  F+ V +AC+HAGL ++G +YF  M  
Sbjct: 169 NSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVR 228

Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
              + P  EH +CMVDL  RAGQL +A+++IE+M       +W  +L AC++HK  EL  
Sbjct: 229 DCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGR 288

Query: 338 LAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRV 397
           LA  K+I ++P ++  YVLLSN+Y+E+ +     +VR +M ER +KK+PGYS++E+K + 
Sbjct: 289 LAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKT 348

Query: 398 HLFMVGDRNHHQTVEIYRMLD----KLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLA 453
           + F+ GDR+H    +IY  L+    +L++L  E D +      + E        HSE+LA
Sbjct: 349 YSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLA 408

Query: 454 IAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKS-GFCSC 512
           IAFG+I T  G+ ++++KNLR+CGDCHL IKL++KI +R+ +VRD+ RFHHF S G CSC
Sbjct: 409 IAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSC 468

Query: 513 KDYW 516
            D+W
Sbjct: 469 GDFW 472



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 132/248 (53%), Gaps = 5/248 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP-GYLWLGMCCHC 71
           V ++A+++GY        A+ +FG++ + G++ N  T   +L +C      +  G   H 
Sbjct: 64  VAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHG 123

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K  LD    V + L+TMY K G+++   ++F +  EK L++WN+MISGYAQ+G A  
Sbjct: 124 FAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMK 183

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLE-VEQQIQANGFGSNPFLNNALI 190
            L++++EMK   V  D VTF+GV ++C H G    G +  +  ++          N+ ++
Sbjct: 184 ALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMV 243

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           ++Y+R G L+KA  + + MP     + W  I+    +H   E+     ++++   ++P+ 
Sbjct: 244 DLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKII--AMKPED 301

Query: 250 TAFVSVLS 257
           +A   +LS
Sbjct: 302 SAAYVLLS 309


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  364 bits (935), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 193/517 (37%), Positives = 291/517 (56%), Gaps = 27/517 (5%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  +IS Y    L   A+ L   M   GV  N  T   +L  C     L+     H  
Sbjct: 352 VSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRAC---ERLYDLKQLHSW 408

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K GL+ D  V + L+ +Y K G +    K+F ++     + WN++I+ +AQ+      
Sbjct: 409 IMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEA 468

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L LY+ M+ +G   D  T   VL +C  L    +G +    +    F  +  LNNAL++M
Sbjct: 469 LHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQA--HVHVLKFDQDLILNNALLDM 526

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CG+L+ A+ IF+ M +K V+SW+ +I G   +G    A+ LF+ M   G +P+    
Sbjct: 527 YCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHITI 586

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + VL ACSHAGL ++G  YF  M N YG+ PG EHY CM+DLLGRA +L++ ++LI  M 
Sbjct: 587 LGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDDMVKLIHEMN 646

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            EPD   W  LL AC+  +NV+LA  A  +++KL+P +TG YVLLSNIY+ ++  + +  
Sbjct: 647 CEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDTGAYVLLSNIYAISKRWNDVAE 706

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL------------ 420
           VR  M++R ++K+PG S++E+  ++H F++GD++H Q  EI R L++             
Sbjct: 707 VRRTMKKRGIRKEPGCSWIEVNKQIHAFILGDKSHPQIDEINRQLNQFICRLAGAGYVPD 766

Query: 421 ENLV-QEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDC 479
            N V Q+ +G +R D             HSEKLAI FGI++      I + KNL+ICGDC
Sbjct: 767 TNFVLQDLEGEQREDS---------LRYHSEKLAIVFGIMSFPKEKTIRIWKNLKICGDC 817

Query: 480 HLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           H F KL++++  R  ++RD  R+HHF+ G CSC DYW
Sbjct: 818 HKFAKLIAELEQRHIVIRDPIRYHHFQDGVCSCGDYW 854



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 139/299 (46%), Gaps = 9/299 (3%)

Query: 28  VSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNC 87
           +  A+ +   M  +GV  +S+T   L+  C+  G +  G   H      G      + N 
Sbjct: 266 LPSAMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNI 325

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L+ MYVK   ++  + LFD++PE+ +++W  MIS Y+   L    + L   M   GV P+
Sbjct: 326 LINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPN 385

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
             TF  VL +C  L       ++   I   G  S+ F+ +ALI++Y++ G L +A  +F 
Sbjct: 386 MFTFSSVLRACERLYDLK---QLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFR 442

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            M     V W +II  +  H  G+ A+ L+  M + G   D +   SVL AC+   L + 
Sbjct: 443 EMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLEL 502

Query: 268 GLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           G + + + +K    L         ++D+  + G L +A + I + + + D   W  ++ 
Sbjct: 503 GRQAHVHVLKFDQDLILN----NALLDMYCKCGSLEDA-KFIFNRMAKKDVISWSTMIA 556



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 106/204 (51%), Gaps = 8/204 (3%)

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
           A HVL+    M+  GV  D++T+  ++  C   GA   G  V + I +NG+    FL N 
Sbjct: 269 AMHVLD---SMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNI 325

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           LINMY +   L++A+ +FD MP + VVSWT +I  Y      + A++L   M + G+ P+
Sbjct: 326 LINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPN 385

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
              F SVL AC    L D  L+  +    K GL+      + ++D+  + G+L EAL++ 
Sbjct: 386 MFTFSSVLRACER--LYD--LKQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVF 441

Query: 309 ESMLVEPDGAVWGALLGACKIHKN 332
             M+   D  VW +++ A   H +
Sbjct: 442 REMMT-GDSVVWNSIIAAFAQHSD 464


>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
          Length = 795

 Score =  364 bits (935), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 190/508 (37%), Positives = 295/508 (58%), Gaps = 5/508 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N +I GY LN    +A   F +MR  G ++  VT + LL  C        G   H  
Sbjct: 289 VTWNCMIGGYALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAY 348

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            V+        +   L+ MY K G V+   K+F Q+ +K L++WN MI+ Y    +    
Sbjct: 349 VVRRHFLPHVVLETALLEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEA 408

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           + L+ E+ +  + PD  T   V+ +   LG+     ++   I   G+G +  + NA+++M
Sbjct: 409 IALFLELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAVMHM 468

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YARCGN+  +R IFD MP K V+SW  II GY IHG G++A+++FDEM  SG+ P+ + F
Sbjct: 469 YARCGNIVASREIFDKMPGKDVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTF 528

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           VSVL+ACS +GL  +G + F  M+ +YG+ P  EHY CM DLLGRAG+L E L  IE+M 
Sbjct: 529 VSVLTACSVSGLEAEGWKEFNSMQQEYGMIPQIEHYGCMTDLLGRAGELREVLRFIENMP 588

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           + P   +WG+LL A +   ++++AE A  ++ +LE  NTG YV+LS++Y++A   + + R
Sbjct: 589 IAPTSRIWGSLLTASRNKNDIDIAEYAAERIFQLEHNNTGCYVVLSSMYADAGRWEDVER 648

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           +R +M+E+ L++    S VEL  +   F+ GD +H Q+ +I+   D L   + E D    
Sbjct: 649 IRSLMKEKGLRRTEARSLVELNNKECSFVNGDMSHPQSEKIHEFSDILSRNIGE-DLDSS 707

Query: 433 SDQKNSEEHLNDTEV----HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
           S+ ++S+   + T V    HS +LA+AFG+I++  G+ ++V KN+R+C  CH  +KL+SK
Sbjct: 708 SNLRDSDPFASSTTVLPNKHSVRLAVAFGLISSEAGSPVLVKKNVRVCNHCHHALKLISK 767

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
              R+ +V D   +H F  G C C DYW
Sbjct: 768 YSGRKIVVGDTKIYHIFSDGSCCCGDYW 795



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 186/389 (47%), Gaps = 10/389 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N +I G+    L  +A++ +  M + G   +  T   +L  C   G L  G   H   +
Sbjct: 88  HNVMIRGFADADLPLDALAAYRAMLDAGARPDRFTFPVVLKCCARAGALGEGRAAHAAVI 147

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K GL  D    N L+ +Y K G V    ++FD +P + +++WN M+ GY  NG+    L 
Sbjct: 148 KLGLGADVYTANSLVALYAKLGLVGDAERVFDGMPARDIVSWNTMVDGYVSNGMGALALA 207

Query: 135 LYREMK-SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
            +REM  +L V  D+V  +  L++C    A ++G E+      +G   +  +  +L++MY
Sbjct: 208 CFREMNDALQVGHDSVGVIAALAACCLESALALGREIHGYAIRHGLEQDVKVGTSLVDMY 267

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
            +CGN+  A  +F  MP +TVV+W  +IGGY ++     A   F +M   G + +    +
Sbjct: 268 CKCGNVFFAENVFAKMPLRTVVTWNCMIGGYALNERPVDAFDCFMQMRVDGFQVEVVTAI 327

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           ++L+AC+    +  G      +  ++ L P     T ++++ G+ G++ E+ E I   + 
Sbjct: 328 NLLTACAQTESSLFGRSVHAYVVRRHFL-PHVVLETALLEMYGKVGKV-ESSEKIFGQIT 385

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKL--EPMNTGYYVLLSNIYSEARNLDGIM 371
           +     W  ++ A   +  +E+ + A    ++L  +P+   Y+ + + +   A  L G +
Sbjct: 386 DKTLVSWNNMIAA---YMYMEMYQEAIALFLELLNQPLYPDYFTMTTVV--PAFVLLGSI 440

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLF 400
           R    M    +K   G S + +   +H++
Sbjct: 441 RQCKQMHSYIVKLGYGDSTLIMNAVMHMY 469



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 168/370 (45%), Gaps = 5/370 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +N ++ GYV N + + A++ F +M +   V  +SV ++  L  C     L LG   H 
Sbjct: 187 VSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLESALALGREIHG 246

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             ++ GL+ D  VG  L+ MY KCG+V +   +F ++P + ++TWN MI GYA N     
Sbjct: 247 YAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGYALNERPVD 306

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
             + + +M+  G   + VT + +L++CA   +   G  V   +    F  +  L  AL+ 
Sbjct: 307 AFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLPHVVLETALLE 366

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY + G ++ +  IF  +  KT+VSW  +I  Y      + A+ LF E+L   + PD   
Sbjct: 367 MYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFLELLNQPLYPDYFT 426

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
             +V+ A    G + +  +  +    K G          ++ +  R G +  + E+ + M
Sbjct: 427 MTTVVPAFVLLG-SIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARCGNIVASREIFDKM 485

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFG--KVIKLEPMNTGYYVLLSNIYSEARNLDG 369
             + D   W  ++    IH   ++A   F   K   +EP  + +  +L+         +G
Sbjct: 486 PGK-DVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSVLTACSVSGLEAEG 544

Query: 370 IMRVRMMMRE 379
                 M +E
Sbjct: 545 WKEFNSMQQE 554



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 109/239 (45%), Gaps = 3/239 (1%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L+  +V  G +D     F  V   G    N MI G+A   L    L  YR M   G  PD
Sbjct: 60  LILSHVAAGRMDEAADAFAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAGARPD 119

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
             TF  VL  CA  GA   G      +   G G++ +  N+L+ +YA+ G +  A  +FD
Sbjct: 120 RFTFPVVLKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVFD 179

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS-GIRPDGTAFVSVLSACSHAGLTD 266
           GMP + +VSW  ++ GY  +G G +A+  F EM  +  +  D    ++ L+AC       
Sbjct: 180 GMPARDIVSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLESALA 239

Query: 267 KGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
            G E  +G   ++GL+   +  T +VD+  + G +  A  +   M +      W  ++G
Sbjct: 240 LGRE-IHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLR-TVVTWNCMIG 296


>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
 gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  364 bits (935), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 190/487 (39%), Positives = 288/487 (59%), Gaps = 15/487 (3%)

Query: 38  MREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS 97
           M  +G++ N  T   +L     PG     M  H   +K       SVG  L+  YVK G+
Sbjct: 1   MSREGIKPNDFTYSTIL--TAQPGVSPFEM--HAQAIKRNYVKSPSVGTALLDAYVKRGN 56

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
           VD   K+F ++ EK ++ W+AMI GYAQ G     + ++ +M    + P+  TF G++++
Sbjct: 57  VDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINA 116

Query: 158 CAHLGAHSVGLEVEQQIQA----NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
           CA   A + G+E  +Q+ A    + F +   +++AL+ MY++ G+++ A  +F     + 
Sbjct: 117 CA---APTAGVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRERD 173

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
           +VSW +II GY  HG+G  A+++F+EM +  +  DG  F+ V+SAC+H GL ++G  YF 
Sbjct: 174 LVSWNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLANEGQRYFD 233

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNV 333
            M   + ++P  EHY+CMVDL GRAG L +A+E+I  M       VW  LL A  IH+N+
Sbjct: 234 IMVKDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEMPFPASANVWRTLLAASCIHRNL 293

Query: 334 ELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVEL 393
           E+ +LA  K+I L+P N   YVLL+N+Y+   N     +VR +M E+++KK  GYS++E+
Sbjct: 294 EVGKLAADKLISLQPQNPASYVLLTNMYASVGNWKERAKVRKLMEEKKVKKVAGYSWIEV 353

Query: 394 KGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ---EHDGTKRSDQKNSEEHLNDT-EVHS 449
           K + + F+ GD +H  + +IY  L++L   ++       T    Q   EEH       HS
Sbjct: 354 KNKTYTFLAGDVSHPLSNQIYAKLEELSCQLKGAGYQPDTSYVFQDVDEEHKEAILSQHS 413

Query: 450 EKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGF 509
           E+LAIAFG+I T PGT + ++KNLR+CGDCH  IKL+S +  R  +VRD+ RFHHFK G 
Sbjct: 414 ERLAIAFGLIGTPPGTPLQIVKNLRVCGDCHSVIKLISILEGRDIVVRDSNRFHHFKGGL 473

Query: 510 CSCKDYW 516
           CSC DYW
Sbjct: 474 CSCGDYW 480


>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
          Length = 706

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 183/425 (43%), Positives = 257/425 (60%), Gaps = 4/425 (0%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
           G  D  R+LFD +P++  + WNAMI+GY   G +   L L+ EM+  G     VT V  L
Sbjct: 282 GEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSAL 341

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
           ++CA LGA   G  V     + G   +  L  ALI+MY++CG +  A  +FD M  + V 
Sbjct: 342 TACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVY 401

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           +WT+ + G  ++G G   + LF  M  +G+ P+G  FV VL  CS AGL D+G   F  M
Sbjct: 402 TWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSM 461

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVEL 335
           K+ +G+ P  EHY CMVDL GRAG+L++A+  I  M +EP   VWGALL A +IHKNVEL
Sbjct: 462 KSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVEL 521

Query: 336 AELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKG 395
            + A  K++ +E  N   +VLLSNIY++++N  G+  VR MM+ + +KK PG S +E+ G
Sbjct: 522 GKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGG 581

Query: 396 RVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHD---GTKRSDQKNSEEHLNDT-EVHSEK 451
           +VH F VG + H +  EI  ML ++   ++       TK       EE   D   +HSEK
Sbjct: 582 KVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEK 641

Query: 452 LAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCS 511
           LAIAFG++      EI ++KNLR+C DCH + K++SK+ +R+ ++RD  RFHHFK G CS
Sbjct: 642 LAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACS 701

Query: 512 CKDYW 516
           CKDYW
Sbjct: 702 CKDYW 706



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 126/244 (51%), Gaps = 6/244 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD   +  H  V +NA+I+GYV      EA+ LF +MR  G  +  VT++  L  C   
Sbjct: 290 LFDGMPQRDH--VAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQL 347

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  G   H      G+ L  ++G  L+ MY KCG+V    ++FD + E+ + TW + +
Sbjct: 348 GALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAV 407

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SG A NG+    L L++ M+S GV P+ VTFV VL  C+  G    G      +++N  G
Sbjct: 408 SGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSN-HG 466

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLF 237
            +P+L +   ++++Y R G L  A    +GMP +     W A++    IH + E+     
Sbjct: 467 IDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAM 526

Query: 238 DEML 241
           D+++
Sbjct: 527 DKLM 530



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 1/125 (0%)

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
            A++   A  G    AR +FDGMP++  V+W A+I GY   G    A++LFDEM  +G  
Sbjct: 272 TAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAA 331

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
                 VS L+AC+  G  ++G ++ +   +  G++      T ++D+  + G +  A+E
Sbjct: 332 VGEVTLVSALTACAQLGALERG-KWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAME 390

Query: 307 LIESM 311
           + +SM
Sbjct: 391 VFDSM 395


>gi|302776458|ref|XP_002971391.1| hypothetical protein SELMODRAFT_95540 [Selaginella moellendorffii]
 gi|300160523|gb|EFJ27140.1| hypothetical protein SELMODRAFT_95540 [Selaginella moellendorffii]
          Length = 598

 Score =  364 bits (934), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 197/520 (37%), Positives = 301/520 (57%), Gaps = 14/520 (2%)

Query: 4   ESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL 63
           +SI+   L   +N +I+ +  N  +  AV +F  M    ++ N  T + +L   +D   L
Sbjct: 86  DSIRKKDL-FSWNIMIAAFAENGCLDRAVGVFELMEPARIKRNRGTFVAVLAAGLD---L 141

Query: 64  WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGY 123
             G   H      GL+ +  V   L++MY  CGS D  R++F+QVP+  L+ WNAMI+ Y
Sbjct: 142 EQGKKIHDSVHSSGLERNEMVATALLSMYGACGSTDDARQVFEQVPKLDLVCWNAMITAY 201

Query: 124 AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP 183
            QN      LE++  ++  GV  + VT++  L +CA L   S G  + +++   G     
Sbjct: 202 VQNDRGREALEIFHRLEMEGVKCNEVTYLAALDACACLAVQSEGRSLHKRVSEAGLLLTS 261

Query: 184 F-LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
           F + N+LINMY + GNL+ A  IF+ MP + + SW  ++  YG +G G++AV  F E   
Sbjct: 262 FKVANSLINMYGKSGNLEAAEEIFESMPSRDISSWNVLLTVYGHNGLGDLAVDRFTESCL 321

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
            G  PD   F++VL ACSHAGL D G+E    ++  +G+ P   HY C+VDLLGR+G+L 
Sbjct: 322 EGFEPDSITFLAVLQACSHAGLLDTGVELLVSIQEDWGIDPTQYHYLCVVDLLGRSGELV 381

Query: 303 EALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362
            A  LI SM  EP+   W +LLG C+++ +V   E A  +++ +   ++  YVL++NIY+
Sbjct: 382 RAEALINSMPFEPEEGAWRSLLGGCRVNSDVGRGERATQRLLVMSE-DSSPYVLMANIYA 440

Query: 363 EARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLEN 422
             RN D   R+R +M +R +KK PG S++E++GR+H F   D+ H +  EIY  LD+L  
Sbjct: 441 SIRNFDLAERLRSVMADRNVKKQPGLSWIEVRGRIHTFAANDKLHARKEEIYAGLDRL-- 498

Query: 423 LVQEHDGTKRSDQK------NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
            V+      R D +        E+ +     HSEKLAI FG+++T  G+ + V+KNLR+C
Sbjct: 499 FVELQREGYRPDTRVALYDVEEEKKVRMLLHHSEKLAIMFGLMSTPDGSPLFVLKNLRVC 558

Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            DCH   K+++KI  R+ ++RDA+RFHHF++G CSC DYW
Sbjct: 559 ADCHAATKIIAKITKRKIVMRDASRFHHFENGKCSCCDYW 598



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 136/279 (48%), Gaps = 4/279 (1%)

Query: 46  NSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLF 105
           N+     LL  C +   L  G   H    ++G + +  +GN L+ MY KC S+D     F
Sbjct: 26  NTEAYAALLRRCANERNLVDGKRVHEHLRRYGYENETFLGNLLVQMYGKCSSIDDAALAF 85

Query: 106 DQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHS 165
           D + +K L +WN MI+ +A+NG     + ++  M+   +  +  TFV VL++   L    
Sbjct: 86  DSIRKKDLFSWNIMIAAFAENGCLDRAVGVFELMEPARIKRNRGTFVAVLAAGLDL---E 142

Query: 166 VGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYG 225
            G ++   + ++G   N  +  AL++MY  CG+   AR +F+ +P+  +V W A+I  Y 
Sbjct: 143 QGKKIHDSVHSSGLERNEMVATALLSMYGACGSTDDARQVFEQVPKLDLVCWNAMITAYV 202

Query: 226 IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
            +  G  A+++F  +   G++ +   +++ L AC+   +  +G      +     L    
Sbjct: 203 QNDRGREALEIFHRLEMEGVKCNEVTYLAALDACACLAVQSEGRSLHKRVSEAGLLLTSF 262

Query: 286 EHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
           +    ++++ G++G L  A E+ ESM    D + W  LL
Sbjct: 263 KVANSLINMYGKSGNLEAAEEIFESM-PSRDISSWNVLL 300



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 97/202 (48%), Gaps = 9/202 (4%)

Query: 125 QNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF 184
           Q GLA +  +L +E      C +   +  +L  CA+      G  V + ++  G+ +  F
Sbjct: 8   QVGLADNDKDLGQER----FCSNTEAYAALLRRCANERNLVDGKRVHEHLRRYGYENETF 63

Query: 185 LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
           L N L+ MY +C ++  A   FD + +K + SW  +I  +  +G  + AV +F+ M  + 
Sbjct: 64  LGNLLVQMYGKCSSIDDAALAFDSIRKKDLFSWNIMIAAFAENGCLDRAVGVFELMEPAR 123

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
           I+ +   FV+VL+    AGL  +  +  +   +  GL+      T ++ + G  G  ++A
Sbjct: 124 IKRNRGTFVAVLA----AGLDLEQGKKIHDSVHSSGLERNEMVATALLSMYGACGSTDDA 179

Query: 305 LELIESMLVEPDGAVWGALLGA 326
            ++ E  + + D   W A++ A
Sbjct: 180 RQVFEQ-VPKLDLVCWNAMITA 200


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  364 bits (934), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 199/522 (38%), Positives = 295/522 (56%), Gaps = 9/522 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF+E  K+    V ++ +I+ +  N   ++AV +F +MRE  V  N  T+  +L  C   
Sbjct: 304 VFNEMPKND--VVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIG 361

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
               LG   H + VK G DLD  V N L+ +Y KC  +D   KLF ++  K +++WN +I
Sbjct: 362 KCSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVI 421

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GY   G     L ++RE     V    VTF   L +CA L +  +G++V          
Sbjct: 422 VGYENLGEGGKALNMFREALRNQVSVTEVTFSSALGACASLASMELGVQVHGLAIKTNNA 481

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
               ++N+LI+MYA+CG++K A+ +F+ M    V SW A+I GY  HG G  A+++FD M
Sbjct: 482 KRVAVSNSLIDMYAKCGDIKVAQTVFNEMETIDVASWNALISGYSTHGLGRQALRIFDIM 541

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
             S  +P+G  F+ VLS CS+AGL D+G + F  M   +G++P  EHYTCMV L GR+GQ
Sbjct: 542 KGSDCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCLEHYTCMVRLFGRSGQ 601

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L++A+ LIE +  EP   +W A+L A     N E A  +  +++K+ P +   YVLLSN+
Sbjct: 602 LDKAMNLIEGIPYEPSVMIWRAMLSASMNQYNEEFARRSAEEILKINPKDEATYVLLSNM 661

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+ A+    +  +R  M+E+ +KK+PG S++E +G VH F VG  +H     I  ML+ L
Sbjct: 662 YAGAKQWANVASIRKSMKEKGVKKEPGLSWIEHQGDVHFFSVGSSDHPDMKLINGMLEWL 721

Query: 421 ENLVQEHDGTKRSDQK-----NSEEHLNDTEVHSEKLAIAFGIIN-TSPGTEIVVMKNLR 474
            N+     G            + EE      VHSE+LA+A+G++   S    I++MKNLR
Sbjct: 722 -NMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLR 780

Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           IC DCH  +K++S IV R  ++RD  RFHHF +G CSC D+W
Sbjct: 781 ICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCDDHW 822



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 147/318 (46%), Gaps = 2/318 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  ++S YV N    +++ L  +M   G   N+ T    L   +  G        H  
Sbjct: 213 VVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQ 272

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K   +LD  VG  L+ +Y + G +    K+F+++P+  ++ W+ MI+ + QNG     
Sbjct: 273 ILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKA 332

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           ++++  M+   V P+  T   +L+ CA      +G ++   +   GF  + +++NALI++
Sbjct: 333 VDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDVYVSNALIDV 392

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+C  +  A  +F  +  K VVSW  +I GY   G G  A+ +F E L++ +      F
Sbjct: 393 YAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENLGEGGKALNMFREALRNQVSVTEVTF 452

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S L AC+     + G++  +G+  K            ++D+  + G +  A  +   M 
Sbjct: 453 SSALGACASLASMELGVQ-VHGLAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQTVFNEME 511

Query: 313 VEPDGAVWGALLGACKIH 330
              D A W AL+     H
Sbjct: 512 T-IDVASWNALISGYSTH 528



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 139/311 (44%), Gaps = 7/311 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +  +  V Y  L  GY       + V L+ ++  +G E+N       L + V  
Sbjct: 106 LFDEMPERNN--VSYVTLTQGYA----CQDPVGLYSRLHREGHELNPHVFTSFLKLFVSL 159

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
               +    H   VK G D +  VG  L+  Y  CGSVD  R +F+ +  K ++ W  ++
Sbjct: 160 DKAEICWWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIV 219

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           S Y +NG     L+L   M   G  P+  TF   L +   LGA      V  QI    + 
Sbjct: 220 SCYVENGCFEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYE 279

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            +P +   L+ +Y + G++  A  +F+ MP+  VV W+ +I  +  +G    AV +F  M
Sbjct: 280 LDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRM 339

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            +  + P+     S+L+ C+    +  G E  +G+  K G          ++D+  +  +
Sbjct: 340 REGFVVPNEFTLSSILNGCAIGKCSGLG-EQLHGLVVKVGFDLDVYVSNALIDVYAKCEK 398

Query: 301 LNEALELIESM 311
           ++ A++L   +
Sbjct: 399 MDTAVKLFAEL 409



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 109/248 (43%), Gaps = 17/248 (6%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           HC  +K G  LD    N L+  YVK G       LFD++PE+  +++  +  GYA     
Sbjct: 72  HCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSYVTLTQGYACQDPV 131

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
                L+RE   L    +   F   L     L    +   +   I   G+ SN F+  AL
Sbjct: 132 GLYSRLHREGHEL----NPHVFTSFLKLFVSLDKAEICWWLHSPIVKLGYDSNAFVGAAL 187

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           IN Y+ CG++  AR++F+G+  K +V W  I+  Y  +G  E ++QL   M   G  P+ 
Sbjct: 188 INAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPNN 247

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYG------LQPGPEHYTCMVDLLGRAGQLNE 303
             F + L A         GL  F+  K+ +G       +  P     ++ L  + G +++
Sbjct: 248 YTFDTALKA-------SIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSD 300

Query: 304 ALELIESM 311
           A ++   M
Sbjct: 301 AFKVFNEM 308


>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 558

 Score =  364 bits (934), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 200/510 (39%), Positives = 291/510 (57%), Gaps = 9/510 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T  +N +I  +  +S  S ++SLF KM   GV  +  T   +L  C     L  G+  H 
Sbjct: 53  TFAFNTIIRAHA-DSSPSFSLSLFSKMAMAGVSPDHFTFPFVLKAC---ARLQTGLDLHS 108

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           +  K G D D  V N L+  Y  CG +D+  K+F+++PE+ L++W++MI+ +A+NG    
Sbjct: 109 LLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYE 168

Query: 132 VLELYREMKSLG-VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
            L L++ M+ +G V PD V  + V+S+ + LG   +G  +   I  NG      L  AL+
Sbjct: 169 ALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALV 228

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +M++RCG ++++  +FD M  + V++WTA+I G  +HG    A+++F EM   G +PD  
Sbjct: 229 DMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHV 288

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            F  VL ACSH GL  +G   F  ++N+YG++P PEHY CMVDLLGRAG LNEA + ++ 
Sbjct: 289 TFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDG 348

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M + P+  +W  LLGAC  H  +ELAE    K+ +L+  + G YVLLSN+Y         
Sbjct: 349 MPIRPNSIIWRTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEK 408

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYR----MLDKLENLVQE 426
             VR  MRE+R+ K PG S + +   +H F+ GD NH Q   I      M+D L+ +   
Sbjct: 409 AGVRNSMREKRISKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYT 468

Query: 427 HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
            D +        EE  +    HSEKLA+AF ++       I VMKNLRIC DCH F+K  
Sbjct: 469 PDISNVLFDIEEEEKESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYA 528

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           S + +R+ I+RD  RFHHF  G CSC+DYW
Sbjct: 529 SDVFEREIIIRDRNRFHHFSKGSCSCRDYW 558



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 119/236 (50%), Gaps = 7/236 (2%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
            S+ Y R +FD +       +N +I  +A +  +  +    + M   GV PD  TF  VL
Sbjct: 36  ASLSYARSIFDLIAFPDTFAFNTIIRAHADSSPSFSLSLFSK-MAMAGVSPDHFTFPFVL 94

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
            +CA L     GL++   +   GF S+ ++ N LI+ Y  CG L  A  +F+ MP + +V
Sbjct: 95  KACARL---QTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKVFEEMPERDLV 151

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEM-LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYG 274
           SW+++I  +  +G G  A+ LF  M L   ++PD    +SV+SA S  G  + G ++  G
Sbjct: 152 SWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELG-KWIRG 210

Query: 275 MKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
             ++ GL+      T +VD+  R G + E++ + + M  E +   W AL+    +H
Sbjct: 211 FISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEM-GERNVLTWTALINGLAVH 265


>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  364 bits (934), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 185/510 (36%), Positives = 301/510 (59%), Gaps = 11/510 (2%)

Query: 15  YNALISGYV-LNSLVSEAVSLFGKMREQGVEI-NSVTMLCLLPICVDPGYLWLGMCCHCI 72
           +N+LI GY  +++L  E + LF K+ E G  + NS T+  +L  C        G+  H  
Sbjct: 58  WNSLIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSH 117

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G      V   L+  Y KC  + + RK+F+++P + L+ W AMISG+A+ G     
Sbjct: 118 VLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEA 177

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           +EL+REM+  G+ PDA+T V V+S+CA  GA  +G  +   I+     ++  L+ AL++M
Sbjct: 178 MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 237

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG +++A+ +F  MP K   +W+++I G+  HG  + A+  F +ML++ + PD   F
Sbjct: 238 YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTF 297

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           ++VLSAC+H GL  +G   F+ +  ++G++P  EHY C VDLL R+G + EA  +  +M 
Sbjct: 298 LAVLSACAHGGLVSRG-RRFWSLMLEFGIEPSVEHYGCKVDLLCRSGLVEEAYRITTTMK 356

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           + P+ A W +LL  CK  K + L E+    +++LEP+N   Y+++SN+YS     + +  
Sbjct: 357 IPPNAATWRSLLMGCKKKKLLNLGEIVARYLLELEPLNAENYIMISNLYSSLSQWEKMSE 416

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           +R +M+E+ +K  PG S +E+ G VH F++GD++H +   +   ++++   V+  D   R
Sbjct: 417 LRKVMKEKCIKPVPGCSSIEVDGVVHEFVMGDQSHPEVKMLREFMEEMSMRVR--DSGYR 474

Query: 433 SDQKNSEEHLNDTEV------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
               +    + D E       HSE+ AIA+G++ T     I V+KNLR+C DCH  IK++
Sbjct: 475 PSISDVLHKVVDEEKECALSEHSERFAIAYGLLKTRAPIVIRVVKNLRVCVDCHEVIKII 534

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SK+ +R+ IVRD  RFH F  G CSCKD+W
Sbjct: 535 SKLYEREIIVRDRVRFHKFIKGTCSCKDFW 564



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 158/287 (55%), Gaps = 9/287 (3%)

Query: 76  FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ-NGLATHVLE 134
           F   L   V  C ++ +   G+++Y R +F Q+P   + +WN++I GY+Q + L+   + 
Sbjct: 21  FAFALSKIVAFCALSPF---GNINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIF 77

Query: 135 LYREMKSLGV-CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
           L++++   G   P++ T   VL +CA + A   GL+V   +  +GFGS+ F+  +L+N Y
Sbjct: 78  LFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFY 137

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
            +C  +  AR +F+ MP + +V+WTA+I G+   G  + A++LF EM K+GI+PD    V
Sbjct: 138 GKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLV 197

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           SV+SAC+ AG  D G  + +    KY +    E  T +VD+  + G +  A ++   M V
Sbjct: 198 SVVSACAVAGALDIGY-WLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPV 256

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLE--PMNTGYYVLLS 358
           + D   W +++     H   + A  AF ++++ E  P +  +  +LS
Sbjct: 257 K-DTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLS 302



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 114/214 (53%), Gaps = 5/214 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+ISG+     V EA+ LF +M++ G++ +++T++ ++  C   G L +G   H  
Sbjct: 159 VAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAY 218

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             K+ +  D  +   L+ MY KCG ++  +++F  +P K    W++MI G+A +GLA   
Sbjct: 219 IEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDA 278

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           ++ +++M    V PD VTF+ VLS+CAH G  S G      +    FG  P + +    +
Sbjct: 279 IDAFQQMLETEVTPDHVTFLAVLSACAHGGLVSRGRRFWSLMLE--FGIEPSVEHYGCKV 336

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGG 223
           ++  R G +++A  I   M       +W +++ G
Sbjct: 337 DLLCRSGLVEEAYRITTTMKIPPNAATWRSLLMG 370


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  364 bits (934), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 176/395 (44%), Positives = 255/395 (64%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+I+GYV N    E + +F +M   G + N+VT++ +LP C    +L LG   H  
Sbjct: 195 VSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGY 254

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G+D D S+ N L+ +Y KCG+V+  R LFD +  + L++WNAMI+ Y QN    + 
Sbjct: 255 GIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANA 314

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           ++L+R M++  V  D +T V V+S+CA LGA + G  + + ++  G   N  + NALI+M
Sbjct: 315 VKLFRRMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDM 374

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CGN+  AR +F+ +P ++VVSWT++IG    HGHGE A++LF  M   G++P+   F
Sbjct: 375 YAKCGNIDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTF 434

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            +V +AC H+GL ++G ++F  M   Y + PG EH  CMVDLLGRAG L EA E I+ M 
Sbjct: 435 AAVFTACRHSGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMP 494

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           VEPD +VWGALLG+C+IH N+ELAEL   K+  L+P    +YVL+SNIY+EA   +   R
Sbjct: 495 VEPDVSVWGALLGSCRIHSNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAAR 554

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNH 407
           +R +M ER LKK PG+S VE+  R H F+ G R+ 
Sbjct: 555 LRKLMEERELKKIPGHSLVEVNRRFHTFLSGSRSQ 589



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 197/414 (47%), Gaps = 24/414 (5%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N LI GY       EA++L+  M   G+  ++ T   ++  C     L  G   HC  V
Sbjct: 96  WNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIV 155

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K G D D  V + L+ MY + G       +F ++  + +++W A+I+GY QN      L 
Sbjct: 156 KHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLG 215

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           ++REM   G  P+AVT V VL +CA L   ++G  +       G   +  L NALI +Y 
Sbjct: 216 VFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYG 275

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CGN++ AR++FDGM  + +VSW A+I  Y  +  G  AV+LF  M    +  D    VS
Sbjct: 276 KCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVS 335

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           V+SAC+  G  + G  + + +  + GL+        ++D+  + G ++ A E+ E +   
Sbjct: 336 VISACASLGALNTG-RWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERL--- 391

Query: 315 PDGAV--WGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDGI 370
           P  +V  W +++GAC  H + E A   F ++    ++P +  +  + +         +G 
Sbjct: 392 PCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGR 451

Query: 371 MRVRMMMRERRLKKDPGYSY----VELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
                MMR+  +   PG  +    V+L GR    M          E Y  +DK+
Sbjct: 452 KHFESMMRDYSIM--PGVEHCACMVDLLGRAGSLM----------EAYEFIDKM 493



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 138/264 (52%), Gaps = 3/264 (1%)

Query: 97  SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS 156
           ++DY RK+FDQ+P++ +  WN +I GYA  G     L LY  M   G+ PD  TF  V+ 
Sbjct: 77  TMDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVR 136

Query: 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS 216
           SCA L A   G EV   I  +GF S+ F+ ++L+ MY++ G       +F  M  + +VS
Sbjct: 137 SCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVS 196

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
           WTA+I GY  + + +  + +F EM+ SG +P+    VSVL AC+     + G +  +G  
Sbjct: 197 WTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLG-KLIHGYG 255

Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELA 336
            K G+ P       ++ L G+ G +  A  L + M+V+ +   W A++ A +   N    
Sbjct: 256 IKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQ-NLVSWNAMIAAYE-QNNAGAN 313

Query: 337 ELAFGKVIKLEPMNTGYYVLLSNI 360
            +   + ++ E ++  Y  ++S I
Sbjct: 314 AVKLFRRMQAEKVDFDYITMVSVI 337


>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
          Length = 706

 Score =  364 bits (934), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 183/425 (43%), Positives = 257/425 (60%), Gaps = 4/425 (0%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
           G  D  R+LFD +P++  + WNAMI+GY   G +   L L+ EM+  G     VT V  L
Sbjct: 282 GEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSAL 341

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
           ++CA LGA   G  V     + G   +  L  ALI+MY++CG +  A  +FD M  + V 
Sbjct: 342 TACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVY 401

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           +WT+ + G  ++G G   + LF  M  +G+ P+G  FV VL  CS AGL D+G   F  M
Sbjct: 402 TWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSM 461

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVEL 335
           K+ +G+ P  EHY CMVDL GRAG+L++A+  I  M +EP   VWGALL A +IHKNVEL
Sbjct: 462 KSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVEL 521

Query: 336 AELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKG 395
            + A  K++ +E  N   +VLLSNIY++++N  G+  VR MM+ + +KK PG S +E+ G
Sbjct: 522 GKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGG 581

Query: 396 RVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHD---GTKRSDQKNSEEHLNDT-EVHSEK 451
           +VH F VG + H +  EI  ML ++   ++       TK       EE   D   +HSEK
Sbjct: 582 KVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEK 641

Query: 452 LAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCS 511
           LAIAFG++      EI ++KNLR+C DCH + K++SK+ +R+ ++RD  RFHHFK G CS
Sbjct: 642 LAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACS 701

Query: 512 CKDYW 516
           CKDYW
Sbjct: 702 CKDYW 706



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 126/244 (51%), Gaps = 6/244 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD   +  H  V +NA+I+GYV      EA+ LF +MR  G  +  VT++  L  C   
Sbjct: 290 LFDGMPQRDH--VAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQL 347

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  G   H      G+ L  ++G  L+ MY KCG+V    ++FD + E+ + TW + +
Sbjct: 348 GALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAV 407

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SG A NG+    L L++ M+S GV P+ VTFV VL  C+  G    G      +++N  G
Sbjct: 408 SGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSN-HG 466

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLF 237
            +P+L +   ++++Y R G L  A    +GMP +     W A++    IH + E+     
Sbjct: 467 IDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAM 526

Query: 238 DEML 241
           D+++
Sbjct: 527 DKLM 530



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 1/125 (0%)

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
            A++   A  G    AR +FDGMP++  V+W A+I GY   G    A++LFDEM  +G  
Sbjct: 272 TAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAA 331

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
                 VS L+AC+  G  ++G ++ +   +  G++      T ++D+  + G +  A+E
Sbjct: 332 VGEVTLVSALTACAQLGALERG-KWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAME 390

Query: 307 LIESM 311
           + +SM
Sbjct: 391 VFDSM 395


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  364 bits (934), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 194/541 (35%), Positives = 292/541 (53%), Gaps = 44/541 (8%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T+ +  +I+GY  N    +A+     +  +G+  +  ++      C +   L  G   H 
Sbjct: 383 TISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHS 442

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + VK G   +  V N L+T+Y K  S+   R++FD++  K  +++N+ +S   QN L   
Sbjct: 443 LAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDE 502

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAH------------------------------- 160
             +++  M S    PD V++  ++S+CA                                
Sbjct: 503 ARDVFNNMPS----PDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTILLG 558

Query: 161 ----LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS 216
               LGA  +G ++       G  S   + NAL++MY +C +    + +FD M  + + +
Sbjct: 559 LSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSSADSLK-VFDSMEERDIFT 617

Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
           W  II GY  HG G  A++++  M+ +G+ P+   FV +L ACSH+GL D+G ++F  M 
Sbjct: 618 WNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMS 677

Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELA 336
           + YGL P  EHY CMVDLLGRAG +  A   I  M +EPD  +W ALLGACKIHKNVE+ 
Sbjct: 678 SDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIG 737

Query: 337 ELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGR 396
             A  K+  +EP N G YV+LSNIYS     D + +VR +M+ER + KDPG S++++K +
Sbjct: 738 RRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWMQIKNK 797

Query: 397 VHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKL 452
           +H F+ GD  H Q   IY  L +L  L++       +D      + E+  +    HSEKL
Sbjct: 798 MHSFVTGDEEHEQIQNIYATLWELYTLLKATGYVPDTDFVLHDIDEEQKESSLLYHSEKL 857

Query: 453 AIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSC 512
           A+A+G++ T  G  I +MKNLRICGDCH FIK VS +  R+  VRD  RFHHF++G CSC
Sbjct: 858 AVAYGLLVTPKGMPIQIMKNLRICGDCHTFIKFVSSVTKREIDVRDGNRFHHFRNGSCSC 917

Query: 513 K 513
           +
Sbjct: 918 E 918



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 110/225 (48%), Gaps = 7/225 (3%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N ++T Y++   VD    LF+++P +  I+W  MI+GYA+NG +   L   + +   G+ 
Sbjct: 356 NAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGML 415

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P   +      +C+++ A   G +V       G   N ++ NALI +Y +  ++   R I
Sbjct: 416 PSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQI 475

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           FD M  K  VS+ + +     +   + A  +F+ M      PD  ++ +++SAC+ A   
Sbjct: 476 FDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMPS----PDVVSWTTIISACAQADQG 531

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG--QLNEALELI 308
           ++ +E F  M ++  L P P   T ++ L G  G  QL + +  I
Sbjct: 532 NEAVEIFRSMLHEREL-PNPPILTILLGLSGNLGAPQLGQQIHTI 575



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 137/351 (39%), Gaps = 92/351 (26%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           TV +NA+++ YV N  ++ A  LF  M  +                              
Sbjct: 126 TVAWNAMVTCYVQNGDITLARKLFDAMPSR------------------------------ 155

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYA---QNGL 128
                    D S  N ++T Y     ++  R LF+++PE+  ++W  MISGY    Q+G 
Sbjct: 156 ---------DVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGR 206

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
           A    +++R M   G+ P+    V VLS+  HLG   +   +   +   GF  +  +  A
Sbjct: 207 A---WDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTA 263

Query: 189 LINMYARCGN-LKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           ++N Y +  N L  A   F+GM  +   +W+ II                          
Sbjct: 264 ILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTII-------------------------- 297

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
                    +A S AG  D      + +  +  L+  P   T M+  L R G++++A ++
Sbjct: 298 ---------AALSQAGRIDDA----FAVYQRDPLKSVPSR-TSMLTGLARYGRIDDA-KI 342

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAE-----LAFGKVIKLEPMNTGY 353
           +   + EP+   W A++     ++ V+ AE     + F   I    M  GY
Sbjct: 343 LFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGY 393



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 153/378 (40%), Gaps = 19/378 (5%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGV---EINSVTMLCLLPICVDPGYLWLGMCC 69
           V +  +ISGYVL      A  +F  M  +G+   + N V++L  +     PG L      
Sbjct: 189 VSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGIL---ESI 245

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVK-CGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
           H +  K G + D  VG  ++  Y K    +D   K F+ +  +   TW+ +I+  +Q G 
Sbjct: 246 HVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGR 305

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
                 +Y+    L   P   +   +L+  A  G       +  QI       N    NA
Sbjct: 306 IDDAFAVYQR-DPLKSVPSRTS---MLTGLARYGRIDDAKILFDQIHE----PNVVSWNA 357

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           +I  Y +   + +A  +F+ MP +  +SW  +I GY  +G  E A+     + + G+ P 
Sbjct: 358 MITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPS 417

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
            ++  S   ACS+    + G +  + +  K G Q        ++ L G+   +    ++ 
Sbjct: 418 LSSLTSSFFACSNIEALETGKQ-VHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIF 476

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
           + M V+ D   + + + A   +   + A   F  +    P    +  ++S      +  +
Sbjct: 477 DRMTVK-DTVSYNSFMSALVQNNLFDEARDVFNNMPS--PDVVSWTTIISACAQADQGNE 533

Query: 369 GIMRVRMMMRERRLKKDP 386
            +   R M+ ER L   P
Sbjct: 534 AVEIFRSMLHERELPNPP 551



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 135/338 (39%), Gaps = 94/338 (27%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140
           +   G  L++ Y + G V   R++FD +  +  + WNAM++ Y QNG  T   +L+  M 
Sbjct: 94  NLRTGTILLSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMP 153

Query: 141 SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
           S  V           SS                             N ++  Y     ++
Sbjct: 154 SRDV-----------SSW----------------------------NTMLTGYCHSQLME 174

Query: 201 KARAIFDGMPRKTVVSWTAIIGGYG-IHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC 259
           +AR +F+ MP +  VSWT +I GY  I  HG  A  +F  ML  G+ P+    VSVLSA 
Sbjct: 175 EARNLFERMPERNGVSWTVMISGYVLIEQHGR-AWDMFRTMLCEGMTPEQPNLVSVLSAV 233

Query: 260 SHAG------------------------------------LTDKGLEYFYGM--KNKYGL 281
            H G                                    + D  +++F GM  +N+Y  
Sbjct: 234 RHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYT- 292

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG 341
                 ++ ++  L +AG++++A  + +   ++   +    L G  + +  ++ A++ F 
Sbjct: 293 ------WSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGLAR-YGRIDDAKILFD 345

Query: 342 K-----VIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
           +     V+    M TGY  + + +  EA +L   M  R
Sbjct: 346 QIHEPNVVSWNAMITGY--MQNEMVDEAEDLFNRMPFR 381



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 93/221 (42%), Gaps = 48/221 (21%)

Query: 94  KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVG 153
           + G +   R++FD +P + +I WN+MI  Y  NG+                 PDA     
Sbjct: 45  RLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGM-----------------PDA----- 82

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
                        G  +   I     G N      L++ YAR G ++ AR +FDGM  + 
Sbjct: 83  -------------GRSLADAIS----GGNLRTGTILLSGYARAGRVRDARRVFDGMGVRN 125

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
            V+W A++  Y  +G   +A +LFD M       D +++ ++L+   H+ L ++    F 
Sbjct: 126 TVAWNAMVTCYVQNGDITLARKLFDAMPSR----DVSSWNTMLTGYCHSQLMEEARNLFE 181

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
            M  + G+      +T M+       Q   A ++  +ML E
Sbjct: 182 RMPERNGVS-----WTVMISGYVLIEQHGRAWDMFRTMLCE 217



 Score = 45.4 bits (106), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 11/143 (7%)

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
            +A I    R G L +AR +FD MP + +++W ++I  Y  +G  +    L D +    +
Sbjct: 36  QSARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNL 95

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
           R  GT    +LS  + AG        F GM  +  +      +  MV    + G +  A 
Sbjct: 96  RT-GTI---LLSGYARAGRVRDARRVFDGMGVRNTVA-----WNAMVTCYVQNGDITLAR 146

Query: 306 ELIESMLVEPDGAVWGALL-GAC 327
           +L ++M    D + W  +L G C
Sbjct: 147 KLFDAMPSR-DVSSWNTMLTGYC 168


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  364 bits (934), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 201/509 (39%), Positives = 294/509 (57%), Gaps = 12/509 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGV-EINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +N +I GY  +    EA+ L+  M  +G+   N+ T   LL  C     L  G   H   
Sbjct: 2   WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           +K G + D  V N L+ +Y   G+++  R LFD+   + L+++N MI GYA+       L
Sbjct: 62  IKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESAL 121

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG-FGSNPFLNNALINM 192
            L+ EM++     D VT V VLS+CA LGA  +G  +  Q   NG F  N  L  A+++M
Sbjct: 122 CLFGEMQN----SDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDM 177

Query: 193 YARCGNLKKARAIFD--GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           YA+CG++  A  IF   G   KT   + ++I G   HG GE A+ +F E++ +G++PD  
Sbjct: 178 YAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEV 237

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            FV VL AC H+GL ++G + F  M N YG++P  EHY CMVDLLGR G L EA +L++ 
Sbjct: 238 TFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQK 297

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M  E +  +W ALL AC+ H NV++ E+A  K++++E  +   YVLLSNI ++A   +  
Sbjct: 298 MPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEA 357

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
            +VR +M +  ++K PG+SY+EL G +H F+  D++H Q  EI  ML  +   ++     
Sbjct: 358 RQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYV 417

Query: 431 KRSDQK----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
             + Q     + EE  +    HSEKLA+AFG++  SP   I ++KNLRIC DCH   KLV
Sbjct: 418 PNTAQVMFDIDEEEKESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLV 477

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDY 515
           S+I  R+  VRD  RFHHF++G CSC D+
Sbjct: 478 SEIYGREITVRDTMRFHHFRNGSCSCMDF 506



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 131/249 (52%), Gaps = 16/249 (6%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDES+      V YN +I GY   +    A+ LFG+M+      + VT++ +L  C   
Sbjct: 92  LFDESLVRD--LVSYNTMIKGYAEVNQPESALCLFGEMQNS----DEVTLVAVLSACARL 145

Query: 61  GYLWLGMCCHCICVKFGL-DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE--KGLITWN 117
           G   LG   +   ++ G+ + +  +   +M MY KCGS+D   ++F +V +  K    +N
Sbjct: 146 GAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFN 205

Query: 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
           +MI+G AQ+GL    + ++RE+ S G+ PD VTFVGVL +C H G    G ++ + +  N
Sbjct: 206 SMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESM-FN 264

Query: 178 GFGSNPFLNN--ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGH---GE 231
            +G  P + +   ++++  R G L++A  +   MP     V W A++     HG+   GE
Sbjct: 265 AYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGE 324

Query: 232 VAVQLFDEM 240
           +A Q   EM
Sbjct: 325 IAGQKLLEM 333


>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
 gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
          Length = 951

 Score =  364 bits (934), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 181/425 (42%), Positives = 257/425 (60%), Gaps = 5/425 (1%)

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + ++    +D S  N L+T Y + G V   R LFD++P +  ++W+AM++GY Q G    
Sbjct: 267 VLLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGRE 326

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L L+  M++ GV PD    VGVL++CA LG    G  V   ++AN      FL  AL++
Sbjct: 327 ALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVD 386

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+CG ++ A  +F  M  K V++WT +I G  +HG G  A++LF +M + G++PD  A
Sbjct: 387 MYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIA 446

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+  L AC+H GL DKG E F  M  KYG++P  EHY CMVDLL R G LNEA E++E M
Sbjct: 447 FIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKM 506

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            ++PD  +WGAL+  C+ HKNVELAE      I+LEP  +G YVLL NIY+ +       
Sbjct: 507 PMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAR 566

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
            +R +MRE+ + K PG S VE+KG +H F+VGD +H    EI    D++++ ++  +G  
Sbjct: 567 EIRHLMREKGVDKTPGCSTVEIKGVIHQFIVGDLSHPFIEEILSKWDEIDSRIRLEEGYV 626

Query: 432 RSDQK-----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
              ++       EE  N    HSEK+AIAF +INTS    I ++KNLR+C DCH   KL+
Sbjct: 627 PDKKEVLLDIEEEEKENALSRHSEKMAIAFALINTSDDMPIRIVKNLRVCHDCHHVTKLI 686

Query: 487 SKIVD 491
           SK+ D
Sbjct: 687 SKVFD 691



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 139/282 (49%), Gaps = 9/282 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE        V ++A+++GYV      EA+ LF +M+  GV  +   ++ +L  C   
Sbjct: 299 LFDEMPARN--AVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQL 356

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  G   H       + +   +G  L+ MY KCG +    ++F  + EK ++ W  MI
Sbjct: 357 GVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMI 416

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            G A +G  +  LEL+ +M+ LGV PD + F+G L +C H G    G E+   +    +G
Sbjct: 417 KGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSM-VRKYG 475

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMPRKT-VVSWTAIIGGYGIHGHGEVAVQLF 237
             P + +   ++++ AR G L +AR + + MP K   + W A++ G   H + E+A  + 
Sbjct: 476 IKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVV 535

Query: 238 DEMLKSGIRPDGT-AFVSVLSACSHAGLTDKGLEYFYGMKNK 278
              ++  + PD + A+V + +  + +G      E  + M+ K
Sbjct: 536 KHWIE--LEPDKSGAYVLLGNIYAASGRHASAREIRHLMREK 575


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  364 bits (934), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 177/509 (34%), Positives = 296/509 (58%), Gaps = 4/509 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           ++ + ++I+G+  N L  +A+ +F +M+ + ++++  T   +L  C     L  G   H 
Sbjct: 240 SISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHA 299

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             ++     +  V + L+ MY KC ++     +F ++  K +++W AM+ GY QNG +  
Sbjct: 300 YIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEE 359

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            ++ + +M+  G+ PD  T   V+SSCA+L +   G +   +   +G  S   ++NAL+ 
Sbjct: 360 AVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVT 419

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +Y +CG+++ +  +F+ +  K  V+WTA++ GY   G     + LF+ ML  G++PD   
Sbjct: 420 LYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVT 479

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+ VLSACS AGL +KG + F  M N++G+ P  +HYTCM+DL  RAG++ EA   I  M
Sbjct: 480 FIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKM 539

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
              PD   W  LL +C+ + N+++ + A   +++L+P NT  YVLLS++Y+     + + 
Sbjct: 540 PFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVA 599

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLE-NLVQE---H 427
           R+R  MR++ L+K+PG S+++ K +VH+F   D+++  + +IY  L+KL   +++E    
Sbjct: 600 RLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDKSNPFSDQIYSELEKLNYKMIKEGYVP 659

Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
           D           E +     HSEKLAIAFG++   PG  I V+KNLR+C DCH   K +S
Sbjct: 660 DMNSVLHDVGDSEKIKMLNHHSEKLAIAFGLLFIPPGLPIRVVKNLRVCSDCHNATKYIS 719

Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KI +R+ +VRD  RFH FK G CSC D+W
Sbjct: 720 KITNREILVRDTARFHLFKDGTCSCGDFW 748



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 138/311 (44%), Gaps = 50/311 (16%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGL-------------------------------I 114
           N L++ Y K GS+ Y  K+FDQ+P   L                               +
Sbjct: 48  NNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGV 107

Query: 115 TWNAMISGYAQNGLATHVLELYREM-KSLGVCP-DAVTFVGVLSSCAHLGAHSVGLEVEQ 172
           +WN++ISGYA  GL    ++ Y  M K+ G    + +TF  +L   +  G   +G ++  
Sbjct: 108 SWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHG 167

Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
            +   GF S  F+ + L++MY++ G +  AR +FD +P K VV +  +I G    G  E 
Sbjct: 168 HVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVED 227

Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
           + +LF EM +     D  ++ S+++  +  GL    ++ F  MK +  LQ     +  ++
Sbjct: 228 SKRLFFEMRER----DSISWTSMITGFTQNGLDRDAIDIFREMKLE-NLQMDQYTFGSVL 282

Query: 293 DLLGRAGQLNEALELIESMLVEPDGA----VWGALLGA-CKIHKNVELAELAFGK----- 342
              G    L E  + + + ++  D      V  AL+   CK  KN++ AE  F K     
Sbjct: 283 TACGGVMALQEGKQ-VHAYIIRTDYKDNIFVASALVDMYCKC-KNIKSAEAVFKKMTCKN 340

Query: 343 VIKLEPMNTGY 353
           V+    M  GY
Sbjct: 341 VVSWTAMLVGY 351



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 4/89 (4%)

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
           FL N LI+ YA+ G++  A  +FD MP   + SW  I+  Y   G       LFD M   
Sbjct: 45  FLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILSAYSKLGRVSEMEYLFDAM--- 101

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYF 272
             R DG ++ S++S  +  GL  + ++ +
Sbjct: 102 -PRRDGVSWNSLISGYAGCGLIYQSVKAY 129


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  364 bits (934), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 201/515 (39%), Positives = 296/515 (57%), Gaps = 18/515 (3%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           Y ALI G+V +    +A+ L+ +M    +  ++  M  +L  C     L  G   H   +
Sbjct: 98  YTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRAL 157

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE----KGLITWNAMISGYAQNGLAT 130
           K GL  +  V   +M +Y KCG +   R++F+++PE    K  + W AMI G+ +N    
Sbjct: 158 KLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMN 217

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             LE +R M+   V P+  T V VLS+C+ LGA  +G  V   ++      N F+ NALI
Sbjct: 218 RALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALI 277

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           NMY+RCG++ +A+ +FD M  + V+++  +I G  ++G    A++LF  M+   +RP   
Sbjct: 278 NMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNV 337

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            FV VL+ACSH GL D G + F+ M   YG++P  EHY CMVDLLGR G+L EA +LI +
Sbjct: 338 TFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRT 397

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M + PD  + G LL ACK+HKN+EL E     +      ++G YVLLS++Y+ +      
Sbjct: 398 MKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEA 457

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
            +VR  M+E  ++K+PG S +E+   +H F++GD  H +   IY   +KLE L +     
Sbjct: 458 AQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIY---EKLEELNRLLRLE 514

Query: 431 KRSDQKNSEEHLNDTE---------VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHL 481
               +K  E  L D E         +HSE+LAI +G+I+T P T I VMKNLR+C DCH 
Sbjct: 515 GYHPEK--EVVLQDIEDGEKEWALAIHSERLAICYGLISTEPCTVIRVMKNLRVCYDCHS 572

Query: 482 FIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            IKL++KI  R+ +VRD  RFH+F++G CSC DYW
Sbjct: 573 AIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 607



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 68/200 (34%), Positives = 116/200 (58%), Gaps = 3/200 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           TVC+ A+I G+V N  ++ A+  F  M+ + V  N  T++C+L  C   G L +G   H 
Sbjct: 200 TVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHS 259

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              KF ++L+  VGN L+ MY +CGS+D  + +FD++ ++ +IT+N MISG + NG +  
Sbjct: 260 YMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQ 319

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--AL 189
            +EL+R M    + P  VTFVGVL++C+H G    G ++   +  + +G  P + +   +
Sbjct: 320 AIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRD-YGVEPQIEHYGCM 378

Query: 190 INMYARCGNLKKARAIFDGM 209
           +++  R G L++A  +   M
Sbjct: 379 VDLLGRVGRLEEAYDLIRTM 398



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 123/273 (45%), Gaps = 12/273 (4%)

Query: 94  KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVG 153
           KC ++DY  ++F       +  + A+I G+  +G     ++LY  M    + PD      
Sbjct: 76  KCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMAS 135

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR-- 211
           +L +C    A   G EV  +    G  SN  +   ++ +Y +CG L  AR +F+ MP   
Sbjct: 136 ILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDV 195

Query: 212 --KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
             K  V WTA+I G+  +     A++ F  M    +RP+    V VLSACS  G  + G 
Sbjct: 196 VAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIG- 254

Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC-- 327
            + +    K+ ++        ++++  R G ++EA  + + M  + D   +  ++     
Sbjct: 255 RWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEM-KDRDVITYNTMISGLSM 313

Query: 328 --KIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
             K  + +EL  +  G+  +L P N  +  +L+
Sbjct: 314 NGKSRQAIELFRVMIGR--RLRPTNVTFVGVLN 344



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 11/207 (5%)

Query: 137 REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196
           + +KSL    D    + +L    H+      L +  Q+  NG   +PF+   L+   ++C
Sbjct: 25  KSLKSL----DQKQIISLLQRSKHINQ---VLPIHAQLIRNGHSQDPFMVFELLRSCSKC 77

Query: 197 GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL 256
             +  A  IF       V  +TA+I G+   G+   A+QL+  ML   I PD     S+L
Sbjct: 78  HAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASIL 137

Query: 257 SACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM---LV 313
            AC       +G E  +    K GL         +++L G+ G+L +A  + E M   +V
Sbjct: 138 KACGSQLALREGRE-VHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVV 196

Query: 314 EPDGAVWGALLGACKIHKNVELAELAF 340
             D   W A++     ++ +  A  AF
Sbjct: 197 AKDTVCWTAMIDGFVRNEEMNRALEAF 223


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  363 bits (933), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 183/513 (35%), Positives = 304/513 (59%), Gaps = 18/513 (3%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           YN++++  V +    EAV +  +M ++ V  + VT + ++ +C     L LG+  H   +
Sbjct: 189 YNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLL 248

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           + GL  D  VG+ L+ MY KCG V   R +FD +  + ++ W A+++ Y QNG     L 
Sbjct: 249 RGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLN 308

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+  M   G  P+  TF  +L++CA + A   G  +  +++  GF ++  + NALINMY+
Sbjct: 309 LFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKLGFKNHVIVRNALINMYS 368

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           + G++  +  +F  M  + +++W A+I GY  HG G+ A+Q+F +M+ +   P+   F+ 
Sbjct: 369 KSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQVFQDMVSAEECPNYVTFIG 428

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VLSA SH GL  +G  Y   +   + ++PG EHYTCMV LL RAG L+EA   +++  V+
Sbjct: 429 VLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYTCMVALLSRAGLLDEAENFMKTTQVK 488

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
            D   W  LL AC +H+N +L       V++++P + G Y LLSN+Y++AR  DG++ +R
Sbjct: 489 WDVVAWRTLLNACHVHRNYDLGRRIAESVLQMDPHDVGTYTLLSNMYAKARRWDGVVTIR 548

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE-------- 426
            +MRER +KK+PG S+++++  +H+F+    NH ++++IY+ + +L  L++         
Sbjct: 549 KLMRERNIKKEPGASWLDIRNDIHVFLSEGSNHPESIQIYKKVQQLLALIKPLGYVPNIA 608

Query: 427 ---HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFI 483
              HD     + +  E +L+    HSEKLA+A+G++       I ++KNLR+C DCH  +
Sbjct: 609 SVLHD----VEDEQKEGYLS---YHSEKLALAYGLMKIPSPAPIRIIKNLRMCDDCHTAV 661

Query: 484 KLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KL+SK+ +R  IVRDA RFHHF+ G C+C D+W
Sbjct: 662 KLISKVTNRLIIVRDANRFHHFRDGSCTCLDHW 694



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/384 (26%), Positives = 176/384 (45%), Gaps = 14/384 (3%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
            V +N L++GY+      E + LF  M   Q    N       L  C   G +  GM CH
Sbjct: 81  VVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCH 140

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK---GLITWNAMISGYAQNG 127
            +  KFGL     V + L+ MY +C  V+   ++ D VP +    + ++N++++   ++G
Sbjct: 141 GLLFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESG 200

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
                +E+ R M    V  D VT+VGV+  CA +    +GL V  ++   G   + F+ +
Sbjct: 201 RGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGS 260

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
            LI+MY +CG +  AR +FDG+  + VV WTA++  Y  +G+ E ++ LF  M + G  P
Sbjct: 261 MLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLP 320

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           +   F  +L+AC+       G +  +    K G +        ++++  ++G ++ +  +
Sbjct: 321 NEYTFAVLLNACAGIAALRHG-DLLHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNV 379

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNL 367
              M+   D   W A++     H   + A   F  ++  E      YV    + S   +L
Sbjct: 380 FTDMIYR-DIITWNAMICGYSHHGLGKQALQVFQDMVSAEECPN--YVTFIGVLSAYSHL 436

Query: 368 ----DGIMRVRMMMRERRLKKDPG 387
               +G   +  +MR    K +PG
Sbjct: 437 GLVKEGFYYLNHLMRN--FKIEPG 458



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 117/242 (48%), Gaps = 4/242 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V + AL++ Y+ N    E+++LF  M  +G   N  T   LL  C     L  G   H 
Sbjct: 287 VVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHA 346

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              K G      V N L+ MY K GS+D    +F  +  + +ITWNAMI GY+ +GL   
Sbjct: 347 RVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQ 406

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--AL 189
            L+++++M S   CP+ VTF+GVLS+ +HLG    G      +  N F   P L +   +
Sbjct: 407 ALQVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRN-FKIEPGLEHYTCM 465

Query: 190 INMYARCGNLKKARAIFDGMPRK-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           + + +R G L +A         K  VV+W  ++    +H + ++  ++ + +L+      
Sbjct: 466 VALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQMDPHDV 525

Query: 249 GT 250
           GT
Sbjct: 526 GT 527



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 124/245 (50%), Gaps = 6/245 (2%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL-GV 144
           N L+ +YVKCG +   R LFD +P + +++WN +++GY   G    VL L++ M SL   
Sbjct: 54  NSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNA 113

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARA 204
           CP+   F   LS+C+H G    G++    +   G   + ++ +AL++MY+RC +++ A  
Sbjct: 114 CPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQ 173

Query: 205 IFDGMPRKTV---VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261
           + D +P + V    S+ +++      G GE AV++   M+   +  D   +V V+  C+ 
Sbjct: 174 VLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQ 233

Query: 262 AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWG 321
                 GL   +    + GL       + ++D+ G+ G++  A  + +  L   +  VW 
Sbjct: 234 IRDLQLGLR-VHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDG-LQNRNVVVWT 291

Query: 322 ALLGA 326
           AL+ A
Sbjct: 292 ALMTA 296


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  363 bits (933), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 196/498 (39%), Positives = 288/498 (57%), Gaps = 13/498 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE    T   V + ALI+G+  N+   +A+ LF +M   G++ N  T+  LL      
Sbjct: 145 MFDE--MPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSE 202

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             L  G   H  C+K+G      VG+ L+ MY +CG +D  +  FD +P K  ++WNA+I
Sbjct: 203 HGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALI 262

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SG+A+ G   H L L  +M+     P   T+  V S+CA +GA   G  V   +  +G  
Sbjct: 263 SGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLK 322

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
              F+ N L++MYA+ G++  A+ +FD + +  VVSW  ++ G   HG G+  +  F++M
Sbjct: 323 LIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQM 382

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           L+ GI P+  +F+ VL+ACSH+GL D+GL YF  MK KY ++P   HY   VDLLGR G 
Sbjct: 383 LRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMK-KYKVEPDVPHYVTFVDLLGRVGL 441

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L+ A   I  M +EP  AVWGALLGAC++HKN+EL   A  +  +L+P ++G  +LLSNI
Sbjct: 442 LDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNI 501

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+ A     + +VR MM+E  +KK P  S+VE++  VHLF+  D  H Q  EI    +++
Sbjct: 502 YASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPQIKEIRGKWEEI 561

Query: 421 ENLVQEHDGTKRS-------DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
              ++E      +       DQ+  EE L   + HSEKLA+AF ++NT  G+ I + KN+
Sbjct: 562 SGKIKEIGYVPDTSHVLLFVDQQEREEKL---QYHSEKLALAFALLNTPTGSPIRIKKNI 618

Query: 474 RICGDCHLFIKLVSKIVD 491
           R+CGDCH  IK VSKI +
Sbjct: 619 RVCGDCHAAIKFVSKIYE 636



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/358 (29%), Positives = 187/358 (52%), Gaps = 8/358 (2%)

Query: 53  LLPICVDPGYLWLGMCCHCICV-KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK 111
           LL  C   G +  G   H   V    LD    + N ++ MY KCG +D  R++FD++P K
Sbjct: 93  LLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTK 152

Query: 112 GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVE 171
            ++TW A+I+G++QN      L L+ +M  LG+ P+  T   +L +         G ++ 
Sbjct: 153 DMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLH 212

Query: 172 QQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGE 231
                 G+ S+ ++ +AL++MYARCG++  A+  FDGMP K+ VSW A+I G+   G GE
Sbjct: 213 AFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGE 272

Query: 232 VAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCM 291
            A+ L  +M +   +P    + SV SAC+  G  ++G ++ +    K GL+        +
Sbjct: 273 HALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQG-KWVHAHMIKSGLKLIAFIGNTL 331

Query: 292 VDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPM 349
           +D+  +AG +++A  + +  LV+PD   W  +L  C  H   +     F ++++  +EP 
Sbjct: 332 LDMYAKAGSIDDAKRVFDR-LVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPN 390

Query: 350 NTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKD-PGY-SYVELKGRVHLFMVGDR 405
              +  +L+   S +  LD  +    +M++ +++ D P Y ++V+L GRV L    +R
Sbjct: 391 EISFLCVLTAC-SHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAER 447


>gi|356534396|ref|XP_003535741.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g04780-like [Glycine max]
          Length = 632

 Score =  363 bits (933), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 189/520 (36%), Positives = 299/520 (57%), Gaps = 22/520 (4%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           +  N  I     N+   +A+ L  +M+ +    N  T+  +L  C     +   M  H  
Sbjct: 117 ILXNTRIGALTQNAEDRKALKLLIRMQREVTPFNEFTISSVLCNCAFKCAILECMQLHAF 176

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K  +D +  V   L+ +Y KC S+    ++F+ +PEK  +TW++M++GY QNG     
Sbjct: 177 SIKAAIDSNCFVXTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHDEA 236

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L L+   + +G   D       +S+CA L     G +V      +GFGSN ++ ++LI+M
Sbjct: 237 LLLFHNAQLMGFDQDPFNISSAVSACAGLATLVEGKQVHAMSHKSGFGSNIYVASSLIDM 296

Query: 193 YARCGNLKKARAIFDGMPR-KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           YA+CG +++A  +F+G    +++V W A+I G+  H   + A+ LF++M + G  PD   
Sbjct: 297 YAKCGCIREAYLVFEGFVEVRSIVLWNAMISGFARHALAQEAMILFEKMQQRGFFPDDVT 356

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           +VSVL+ACSH GL ++G +YF  M  ++ L P   HY+CM+D+LGRAG + +A +LI  M
Sbjct: 357 YVSVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVQKAYDLIGRM 416

Query: 312 LVEPDGAVWGALLG-------ACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEA 364
                 ++WG++ G       +C+I+ N+E AE+A   + ++EP N G ++LL+NIY+  
Sbjct: 417 SFNATSSMWGSVRGLSXLIKASCRIYGNIEFAEIAAKHLFEMEPNNAGNHILLANIYAAN 476

Query: 365 RNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLV 424
           +  D + R R ++RE  ++K+ G S++E+K ++H F VG+RNH Q  + Y    KL+NLV
Sbjct: 477 KKSDEVARARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQIDDNYA---KLDNLV 533

Query: 425 QEHDGTKRSDQKNSEEHLNDTEV---------HSEKLAIAFGIINTSPGTEIVVMKNLRI 475
            E    K + + ++   L+D E          HSEKLAI FG++       I ++KNLRI
Sbjct: 534 VELK--KLNYKVDTNNDLHDVEESRKHMLLGHHSEKLAITFGLVCLPTEIPIRIIKNLRI 591

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDY 515
           CGDCH F+KLVSK   R+ IVRD  RFHHFK G CSC ++
Sbjct: 592 CGDCHTFMKLVSKFASREIIVRDTNRFHHFKDGLCSCGEF 631



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 161/360 (44%), Gaps = 5/360 (1%)

Query: 26  SLVSEAVSLFGKMREQGVEINSVTML-CLLPICVDPGYLWLGMCCHCICVKFGLDLDFSV 84
           S++SEA     K+ E  V ++ V+ L  LL +C   G    G  CH   ++ GL++D   
Sbjct: 29  SVISEAKPESSKV-ENVVHMDRVSNLHYLLQLCAKTGSSMGGRACHAQIIRIGLEMDILT 87

Query: 85  GNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGV 144
              L+ MY KC  V   RK  D++  K LI  N  I    QN      L+L   M+    
Sbjct: 88  STMLINMYSKCSLVHSTRKKXDEMLVKSLILXNTRIGALTQNAEDRKALKLLIRMQREVT 147

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARA 204
             +  T   VL +CA   A    +++          SN F+  AL+++YA+C ++K A  
Sbjct: 148 PFNEFTISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVXTALLHVYAKCSSIKDASQ 207

Query: 205 IFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL 264
           +F+ MP K  V+W++++ GY  +G  + A+ LF      G   D     S +SAC+    
Sbjct: 208 MFESMPEKNAVTWSSMMAGYVQNGFHDEALLLFHNAQLMGFDQDPFNISSAVSACAGLAT 267

Query: 265 TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
             +G +  + M +K G        + ++D+  + G + EA  + E  +      +W A++
Sbjct: 268 LVEG-KQVHAMSHKSGFGSNIYVASSLIDMYAKCGCIREAYLVFEGFVEVRSIVLWNAMI 326

Query: 325 GACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRL 382
                H   + A + F K+ +    P +  Y  +L+       + +G     +M+R+  L
Sbjct: 327 SGFARHALAQEAMILFEKMQQRGFFPDDVTYVSVLNACSHMGLHEEGQKYFDLMVRQHNL 386


>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
 gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
          Length = 699

 Score =  363 bits (933), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 183/425 (43%), Positives = 257/425 (60%), Gaps = 4/425 (0%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
           G  D  R+LFD +P++  + WNAMI+GY   G +   L L+ EM+  G     VT V  L
Sbjct: 275 GEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSAL 334

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
           ++CA LGA   G  V     + G   +  L  ALI+MY++CG +  A  +FD M  + V 
Sbjct: 335 TACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVY 394

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           +WT+ + G  ++G G   + LF  M  +G+ P+G  FV VL  CS AGL D+G   F  M
Sbjct: 395 TWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSM 454

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVEL 335
           K+ +G+ P  EHY CMVDL GRAG+L++A+  I  M +EP   VWGALL A +IHKNVEL
Sbjct: 455 KSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVEL 514

Query: 336 AELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKG 395
            + A  K++ +E  N   +VLLSNIY++++N  G+  VR MM+ + +KK PG S +E+ G
Sbjct: 515 GKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGG 574

Query: 396 RVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHD---GTKRSDQKNSEEHLNDT-EVHSEK 451
           +VH F VG + H +  EI  ML ++   ++       TK       EE   D   +HSEK
Sbjct: 575 KVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEK 634

Query: 452 LAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCS 511
           LAIAFG++      EI ++KNLR+C DCH + K++SK+ +R+ ++RD  RFHHFK G CS
Sbjct: 635 LAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACS 694

Query: 512 CKDYW 516
           CKDYW
Sbjct: 695 CKDYW 699



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 126/244 (51%), Gaps = 6/244 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD   +  H  V +NA+I+GYV      EA+ LF +MR  G  +  VT++  L  C   
Sbjct: 283 LFDGMPQRDH--VAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQL 340

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  G   H      G+ L  ++G  L+ MY KCG+V    ++FD + E+ + TW + +
Sbjct: 341 GALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAV 400

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           SG A NG+    L L++ M+S GV P+ VTFV VL  C+  G    G      +++N  G
Sbjct: 401 SGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSN-HG 459

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIHGHGEVAVQLF 237
            +P+L +   ++++Y R G L  A    +GMP +     W A++    IH + E+     
Sbjct: 460 IDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAM 519

Query: 238 DEML 241
           D+++
Sbjct: 520 DKLM 523



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 1/125 (0%)

Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
            A++   A  G    AR +FDGMP++  V+W A+I GY   G    A++LFDEM  +G  
Sbjct: 265 TAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAA 324

Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
                 VS L+AC+  G  ++G ++ +   +  G++      T ++D+  + G +  A+E
Sbjct: 325 VGEVTLVSALTACAQLGALERG-KWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAME 383

Query: 307 LIESM 311
           + +SM
Sbjct: 384 VFDSM 388


>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Brachypodium distachyon]
          Length = 599

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 191/506 (37%), Positives = 283/506 (55%), Gaps = 40/506 (7%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NAL++ Y+ N     A  LFG                    C  PG             
Sbjct: 130 FNALLAAYLANGRADLASRLFGS-------------------CSSPG------------- 157

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
               DLD      ++    + G VD  RKLFD +PE+ LI+WNAMISGY + G     LE
Sbjct: 158 ----DLDVVSWTTMVGGLCRLGLVDDARKLFDGMPERNLISWNAMISGYVKAGRFLDALE 213

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           ++ +M++LG+  +       + +C   G  + G EV + ++ +G   +  L  A+++MY 
Sbjct: 214 VFDQMRALGIEGNGFVAASAVVACTGAGVLARGREVHRWVEQSGITMDEKLATAVVDMYC 273

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG++++A  +F  +P K + SW  +IGG  +HG  + A++LF EM +  + PD    V+
Sbjct: 274 KCGSVEEAWHVFKVLPTKGLTSWNCMIGGLAVHGRCKDAIELFHEMEREDVAPDDVTLVN 333

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VL+AC+H G+   G  YF  +  +YG++P  EHY CMVDL GRAG L+EA ++I+ M +E
Sbjct: 334 VLTACAHTGMVSDGHNYFNYIVQRYGIEPKMEHYGCMVDLFGRAGLLDEAKKVIDDMPME 393

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
           PD  V GAL GACKIH++++L E    +VI+L+P N+G YVLL+N+ + A     + +VR
Sbjct: 394 PDIGVLGALFGACKIHRDLDLGEAIGWRVIELDPQNSGRYVLLANLLASAGQWVDVAKVR 453

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML-DKLENLVQEHDGTKRS 433
            +M ER + K+ G S +E+ G V  F  G   H Q  EI+  + D +  +  E      S
Sbjct: 454 RLMDERNVSKEAGRSVIEIDGEVCEFQCGSLCHAQEKEIFAAVKDMMRKIRLEGYMPDTS 513

Query: 434 D---QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIV 490
           D       EE     + HSEKLAIAFG++ T PG  + + KNLR+C DCH   K +S++ 
Sbjct: 514 DVLHDITEEEKEVPLQYHSEKLAIAFGLLRTRPGDTVRITKNLRVCRDCHEATKFISRVF 573

Query: 491 DRQFIVRDATRFHHFKSGFCSCKDYW 516
           +R+ +VRD  RFHHFK G CSC+DYW
Sbjct: 574 EREIVVRDRNRFHHFKDGTCSCRDYW 599



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 111/218 (50%), Gaps = 4/218 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +NA+ISGYV      +A+ +F +MR  G+E N       +  C   G L  G   H  
Sbjct: 193 ISWNAMISGYVKAGRFLDALEVFDQMRALGIEGNGFVAASAVVACTGAGVLARGREVHRW 252

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             + G+ +D  +   ++ MY KCGSV+    +F  +P KGL +WN MI G A +G     
Sbjct: 253 VEQSGITMDEKLATAVVDMYCKCGSVEEAWHVFKVLPTKGLTSWNCMIGGLAVHGRCKDA 312

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           +EL+ EM+   V PD VT V VL++CAH G  S G      I    +G  P + +   ++
Sbjct: 313 IELFHEMEREDVAPDDVTLVNVLTACAHTGMVSDGHNYFNYI-VQRYGIEPKMEHYGCMV 371

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIH 227
           +++ R G L +A+ + D MP +  +    A+ G   IH
Sbjct: 372 DLFGRAGLLDEAKKVIDDMPMEPDIGVLGALFGACKIH 409


>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
          Length = 558

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 200/510 (39%), Positives = 290/510 (56%), Gaps = 9/510 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T  +N +I  +  +S  S ++SLF KM   GV  +  T   +L  C     L  G+  H 
Sbjct: 53  TFAFNTIIRAHA-DSSPSFSLSLFSKMTMAGVSPDHFTFPFVLKAC---ARLQTGLDLHS 108

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           +  K G D D  V N L+  Y  CG +D+  K F+++PE+ L++W++MI+ +A+NG    
Sbjct: 109 LLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYE 168

Query: 132 VLELYREMKSLG-VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
            L L++ M+ +G V PD V  + V+S+ + LG   +G  +   I  NG      L  AL+
Sbjct: 169 ALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALV 228

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +M++RCG ++++  +FD M  + V++WTA+I G  +HG    A+++F EM   G +PD  
Sbjct: 229 DMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHV 288

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            F  VL ACSH GL  +G   F  ++N+YG++P PEHY CMVDLLGRAG LNEA + ++ 
Sbjct: 289 TFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDG 348

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           M + P+  +W  LLGAC  H  +ELAE    K+ +L+  + G YVLLSN+Y         
Sbjct: 349 MPIRPNSIIWRTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEK 408

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYR----MLDKLENLVQE 426
             VR  MRE+R+ K PG S + +   +H F+ GD NH Q   I      M+D L+ +   
Sbjct: 409 AGVRNSMREKRISKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYT 468

Query: 427 HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
            D +        EE  +    HSEKLA+AF ++       I VMKNLRIC DCH F+K  
Sbjct: 469 PDISNVLFDIEEEEKESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYA 528

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           S + +R+ I+RD  RFHHF  G CSC+DYW
Sbjct: 529 SDVFEREIIIRDRNRFHHFSKGSCSCRDYW 558



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 118/236 (50%), Gaps = 7/236 (2%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
            S+ Y R +FD +       +N +I  +A +  +  +    + M   GV PD  TF  VL
Sbjct: 36  ASLSYARSIFDLIAFPDTFAFNTIIRAHADSSPSFSLSLFSK-MTMAGVSPDHFTFPFVL 94

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
            +CA L     GL++   +   GF S+ ++ N LI+ Y  CG L  A   F+ MP + +V
Sbjct: 95  KACARL---QTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKAFEEMPERDLV 151

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEM-LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYG 274
           SW+++I  +  +G G  A+ LF  M L   ++PD    +SV+SA S  G  + G ++  G
Sbjct: 152 SWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELG-KWIRG 210

Query: 275 MKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
             ++ GL+      T +VD+  R G + E++ + + M  E +   W AL+    +H
Sbjct: 211 FISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEM-GERNVLTWTALINGLAVH 265


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 188/516 (36%), Positives = 305/516 (59%), Gaps = 13/516 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICV---DPGYLWLGMCC 69
           V +NA+ + Y+ +    EA+ LF +M  +GV  +  T +  L  C          +G   
Sbjct: 421 VSWNAMAAAYLQHHRSREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRI 480

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV--PEKGLITWNAMISGYAQNG 127
             +  + GL+ D +V N  + MY KCGS+   R +F+++    +  ITWN+M++ Y  +G
Sbjct: 481 QSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFERISPARRDCITWNSMLAAYGHHG 540

Query: 128 LATHVLELYREMKSLG-VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
           L     EL++ M++   V P+ VTFV VL +     + + G E+  ++ +NGF S+  + 
Sbjct: 541 LGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQ 600

Query: 187 NALINMYARCGNLKKARAIFDGMP--RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
           NAL+NMYA+CG+L  A+AIFD     ++ V++WT++I GY  +G  E A++LF  M + G
Sbjct: 601 NALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLIAGYAQYGQAERALKLFWTMQQQG 660

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
           +RP+   F+S L+AC+H G  ++G E   GM   +G+ P  +H++C+VDLLGR G+L+EA
Sbjct: 661 VRPNHVTFISALTACNHGGKLEQGCELLSGMTPDHGILPASKHFSCIVDLLGRCGRLDEA 720

Query: 305 LELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEA 364
            +L+E    + D   W ALL ACK  K +E  E    ++++L+P     Y++L+++Y+ A
Sbjct: 721 EKLLERT-SQADVITWMALLDACKNSKELERGERCAERIMQLDPEVASSYIVLASMYAAA 779

Query: 365 RNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLV 424
              +    +R  M ++ ++ DPG S VE+   +H F  GD++H ++ EIY  L++L   +
Sbjct: 780 GRWNEAATIRKTMLDKGIRADPGCSAVEVNQELHSFSAGDKSHPKSEEIYLELERLHWSI 839

Query: 425 QEHDGTKRSD---QKNSEEHLNDTEV-HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCH 480
           +       +       S+EH     + HSEKLAIAFG+++T  G+ + V+KNLR+C DCH
Sbjct: 840 KAAGYVADTGLVLHDVSQEHKERLLMRHSEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCH 899

Query: 481 LFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
              KL+SK+  R  ++RD++R+HHF SG CSC DYW
Sbjct: 900 TATKLISKVTGRDILMRDSSRYHHFTSGTCSCGDYW 935



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 153/325 (47%), Gaps = 11/325 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEI-NSVTMLCLLPICVDPGYLWLG--MCC 69
           V +NA+IS ++ N    EA+ LF  M   G    NSVT + +L  CV+ G L L      
Sbjct: 211 VTWNAMISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAI 270

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLF----DQVPEKGLITWNAMISGYAQ 125
           H   V  G++ +  V   L+  Y K GS+D   ++F    D+ P   L+T +AMIS   Q
Sbjct: 271 HGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQ 330

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHS-VGLEVEQQIQANGFGSNPF 184
           NG     L L+  M   G  P  VT V VL++C+ L   S     +EQ ++      +  
Sbjct: 331 NGWPQESLRLFFAMNLEGTKPSGVTLVSVLNACSMLQVGSATAFVLEQAMEVVSATRDNV 390

Query: 185 LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
           L   L+  YAR  +L +ARA FD +    VVSW A+   Y  H     A+ LF+ ML  G
Sbjct: 391 LGTTLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEG 450

Query: 245 IRPDGTAFVSVLSAC-SHAGLTDKGL-EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
           +RP    F++ L+AC ++   T   + +    +  + GL+         +++  + G L 
Sbjct: 451 VRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLA 510

Query: 303 EALELIESML-VEPDGAVWGALLGA 326
           +A  + E +     D   W ++L A
Sbjct: 511 DARAVFERISPARRDCITWNSMLAA 535



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 132/264 (50%), Gaps = 12/264 (4%)

Query: 52  CLLPICVDPGYLWLGMCCHCICVKFGLDLDFS--VGNCLMTMYVKCGSVDYGRKLFDQVP 109
           CLL  C     L  G   H   +   +DL     + + L+ M+ KCG++     L D+  
Sbjct: 48  CLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEALADRFA 107

Query: 110 EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLE 169
              + +  AMI  + ++G     +EL+  M+   V P+    + ++++C+ LG  + G  
Sbjct: 108 --SVYSCTAMIRAWMEHGRPDKAMELFDRME---VRPNCHALIALVNACSCLGNLAAGRR 162

Query: 170 VEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGI 226
           +  QI    F  N  L NALI+MY++CG+L  A+  FD +PR   + VV+W A+I  +  
Sbjct: 163 IHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLR 222

Query: 227 HGHGEVAVQLFDEMLKSGI-RPDGTAFVSVLSACSHAGLTD-KGLEYFYGMKNKYGLQPG 284
           +G    A+QLF +M + G   P+   FVSVL +C  AGL   + +   +G     G++  
Sbjct: 223 NGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIERE 282

Query: 285 PEHYTCMVDLLGRAGQLNEALELI 308
               T +VD  G+ G L++A E+ 
Sbjct: 283 AFVRTALVDSYGKLGSLDDAWEVF 306



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 11/128 (8%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD+S  +    + + +LI+GY        A+ LF  M++QGV  N VT +  L  C   
Sbjct: 619 IFDKSSSNQEDVIAWTSLIAGYAQYGQAERALKLFWTMQQQGVRPNHVTFISALTACNHG 678

Query: 61  GYLWLGMCCHCICVKFGLDLDFSV------GNCLMTMYVKCGSVDYGRKLFDQVPEKGLI 114
           G L  G  C  +    G+  D  +       +C++ +  +CG +D   KL ++  +  +I
Sbjct: 679 GKLEQG--CELLS---GMTPDHGILPASKHFSCIVDLLGRCGRLDEAEKLLERTSQADVI 733

Query: 115 TWNAMISG 122
           TW A++  
Sbjct: 734 TWMALLDA 741


>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
          Length = 983

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 181/425 (42%), Positives = 257/425 (60%), Gaps = 5/425 (1%)

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           + ++    +D S  N L+T Y + G V   R LFD++P +  ++W+AM++GY Q G    
Sbjct: 267 VLLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGRE 326

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L L+  M++ GV PD    VGVL++CA LG    G  V   ++AN      FL  AL++
Sbjct: 327 ALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVD 386

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+CG ++ A  +F  M  K V++WT +I G  +HG G  A++LF +M + G++PD  A
Sbjct: 387 MYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIA 446

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+  L AC+H GL DKG E F  M  KYG++P  EHY CMVDLL R G LNEA E++E M
Sbjct: 447 FIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKM 506

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            ++PD  +WGAL+  C+ HKNVELAE      I+LEP  +G YVLL NIY+ +       
Sbjct: 507 PMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAR 566

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
            +R +MRE+ + K PG S VE+KG +H F+VGD +H    EI    D++++ ++  +G  
Sbjct: 567 EIRHLMREKGVDKTPGCSTVEIKGVIHQFIVGDLSHPFIEEILSKWDEIDSRIRLEEGYV 626

Query: 432 RSDQK-----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
              ++       EE  N    HSEK+AIAF +INTS    I ++KNLR+C DCH   KL+
Sbjct: 627 PDKKEVLLDIEEEEKENALSRHSEKMAIAFALINTSDDMPIRIVKNLRVCHDCHHVTKLI 686

Query: 487 SKIVD 491
           SK+ D
Sbjct: 687 SKVFD 691



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 139/282 (49%), Gaps = 9/282 (3%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE        V ++A+++GYV      EA+ LF +M+  GV  +   ++ +L  C   
Sbjct: 299 LFDEMPARN--AVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQL 356

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  G   H       + +   +G  L+ MY KCG +    ++F  + EK ++ W  MI
Sbjct: 357 GVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMI 416

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            G A +G  +  LEL+ +M+ LGV PD + F+G L +C H G    G E+   +    +G
Sbjct: 417 KGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSM-VRKYG 475

Query: 181 SNPFLNN--ALINMYARCGNLKKARAIFDGMPRKT-VVSWTAIIGGYGIHGHGEVAVQLF 237
             P + +   ++++ AR G L +AR + + MP K   + W A++ G   H + E+A  + 
Sbjct: 476 IKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVV 535

Query: 238 DEMLKSGIRPDGT-AFVSVLSACSHAGLTDKGLEYFYGMKNK 278
              ++  + PD + A+V + +  + +G      E  + M+ K
Sbjct: 536 KHWIE--LEPDKSGAYVLLGNIYAASGRHASAREIRHLMREK 575


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 197/518 (38%), Positives = 297/518 (57%), Gaps = 16/518 (3%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKM--REQGVEINSVTMLCLLPICVDPGYLWLGMCC 69
           +V +NA+++ Y L+    EA+ LF +M  R +    +  +    +  C +   L  G   
Sbjct: 97  SVTWNAMMTNYKLDGRDREALELFREMCERSRSARPDKFSFSIAIEACSNLEDLEQGREI 156

Query: 70  HCICVKFGLDL--DFSVGNCLMTMYVKCGSVDYGRKLFDQVP-EKGLITWNAMISGYAQN 126
           H +  + G +L  D  VG  L+ MY KCG ++  RK+FD +  +   + WNAMI+ YAQ+
Sbjct: 157 HEMLRREGKELHKDVVVGTALLNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQH 216

Query: 127 GLATHVLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
           G     L+LYR M  +  + P   TFV V+  CA L A   G  +  +++A  F +N  +
Sbjct: 217 GRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLV 276

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
           +NAL++MY +CG L +A  +F  M  K  +SW  II  Y  HGH + A+ L+ EM   G+
Sbjct: 277 SNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGV 336

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
           +P    FV +LSACSH GL   GL+YFY M++ + ++P   H+ C++DLLGR G+L EA 
Sbjct: 337 KPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAE 396

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR 365
            +++SM ++ +   W +LLGACK H +++    A  +V+   P  +G YVLLSNIY+ A 
Sbjct: 397 LVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAG 456

Query: 366 NLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ 425
               + ++R +M  R +KK PG S++E+   VH F+ GDR+H Q  EIY  L K   +V+
Sbjct: 457 RWKDVEKIRKIMAARGVKKSPGKSWIEIGDVVHEFVSGDRSHPQGEEIYVELGK---MVE 513

Query: 426 EHDGTKRSDQKNSEEHLNDTEV-------HSEKLAIAFGIINTSPGTEIVVMKNLRICGD 478
           E  G       +S  H  + E        HSEKLAI +G +     + + ++KNLR+C D
Sbjct: 514 EMKGLGYVPDTSSVFHDLEEEEKEDLLVCHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLD 573

Query: 479 CHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           CH   K +S+I  R+ +VRDA RFH F++G CSC+DYW
Sbjct: 574 CHTATKFMSRITGRKIVVRDAARFHLFENGSCSCRDYW 611



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 175/375 (46%), Gaps = 12/375 (3%)

Query: 19  ISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWL--GMCCHCICVKF 76
           ++ +  N   SEA+  F +M + G   + VT   +L      G   +  G   H      
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 60

Query: 77  GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY 136
           GL  +  VG  +++MY KCG +D  R  F+++  K  +TWNAM++ Y  +G     LEL+
Sbjct: 61  GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELF 120

Query: 137 REM--KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG--FGSNPFLNNALINM 192
           REM  +S    PD  +F   + +C++L     G E+ + ++  G     +  +  AL+NM
Sbjct: 121 REMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNM 180

Query: 193 YARCGNLKKARAIFDGMPRKT-VVSWTAIIGGYGIHGHGEVAVQLFDEMLK-SGIRPDGT 250
           Y++CG+L++AR +FD +      V W A+I  Y  HG G+ A+ L+  M   + + P   
Sbjct: 181 YSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQG 240

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
            FV+V+  C+      +G    +                 +V + G+ G L+EAL++  S
Sbjct: 241 TFVTVIDVCAELSALKQG-RAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHS 299

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGK--VIKLEPMNTGYYVLLSNIYSEARNLD 368
           M ++ D   W  ++ +   H + + A L + +  +  ++P    +  LLS         D
Sbjct: 300 MKLK-DEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVAD 358

Query: 369 GIMRVRMMMRERRLK 383
           G+     M  + R+K
Sbjct: 359 GLDYFYRMQDDHRIK 373



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 124/245 (50%), Gaps = 6/245 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICVD 59
           VFD SI+    +VC+NA+I+ Y  +    +A+ L+  M +   +     T + ++ +C +
Sbjct: 193 VFD-SIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAE 251

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              L  G   H        D +  V N L+ MY KCG +D    +F  +  K  I+WN +
Sbjct: 252 LSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTI 311

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           IS YA +G +   L LY+EM   GV P  VTFVG+LS+C+H G  + GL+   ++Q +  
Sbjct: 312 ISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHR 371

Query: 180 --GSNPFLNNALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQL 236
              S P     +I++  R G L +A  +   MP +   V W +++G    HG  +  V+ 
Sbjct: 372 IKPSVPHF-GCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRA 430

Query: 237 FDEML 241
            D+++
Sbjct: 431 ADQVV 435


>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Brachypodium distachyon]
          Length = 868

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 194/507 (38%), Positives = 292/507 (57%), Gaps = 4/507 (0%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           T   + + A+ISGY  N    +A+ ++  M    V  + VT+   L  C   G L +G+ 
Sbjct: 359 TRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIK 418

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            H +    G      V N L+ MY K   ++   ++F  +P+K +I+W++MI+G+  N  
Sbjct: 419 LHELATSKGFIRYIVVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHK 478

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
               L  +R M +  V P++VTF+  L++CA  G+   G E+   +   G  S  ++ NA
Sbjct: 479 NFEALYYFRHMLA-DVKPNSVTFIAALAACAATGSLRCGKEIHAHVLRQGIASEGYVPNA 537

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           L+++Y +CG    A A F     K VVSW  ++ G+  HGHG++A+  F+EML++G  PD
Sbjct: 538 LLDLYVKCGQTGYAWAQFGAHGTKDVVSWNIMLAGFVAHGHGDIALSFFNEMLETGEHPD 597

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
              FV++L  CS AG+  +G E F+ M  KY + P  +HY CMVDLL R G+L E    I
Sbjct: 598 EVTFVALLCGCSRAGMVSQGWELFHSMTEKYSIVPNLKHYACMVDLLSRVGRLTEGYNFI 657

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
             M + PD AVWGALL  C+IH+N+EL ELA   V++LEP + GY+VLLS++Y++A    
Sbjct: 658 NRMPITPDAAVWGALLNGCRIHRNIELGELAAKIVLELEPNDAGYHVLLSDLYADAGMWA 717

Query: 369 GIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHD 428
            + +VR  MR + L+ D G S+VE+KG +H F+  D +H Q  EI  +LD +   ++   
Sbjct: 718 EVSKVRKTMRVKGLEHDYGCSWVEVKGAIHAFLTDDESHPQIKEINDVLDGIYERMKASG 777

Query: 429 GTKRSDQKNSEEHLNDTEV---HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
                     ++ ++  +V   HSE+LA+AFG+INT+PGT I V KN   C  CH  +++
Sbjct: 778 FAPVESYSLEDKEVSKDDVLCGHSERLAVAFGLINTTPGTSICVTKNQYTCESCHGILRM 837

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSC 512
           +SKIV R+  VRD   FHHF+ G CSC
Sbjct: 838 ISKIVRREITVRDTKEFHHFRDGSCSC 864



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 159/323 (49%), Gaps = 7/323 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N ++ GY     + EA+ L+ +M   G   +  T  C+L  C     L +G   H   +
Sbjct: 163 WNVMVGGYGKAGFLEEALDLYHRMLWAGARPDVYTFPCVLRSCGGVPDLTMGREVHAHVL 222

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           +FGL ++  V N L+TMY KCG V+  RK+FD +     I+WNAMI+G+ +N      LE
Sbjct: 223 RFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLTDCISWNAMIAGHFENHECEAGLE 282

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+  M    V P+ +T   V  +   L       E+       GF ++    N+LI MY+
Sbjct: 283 LFLHMLEDEVEPNLMTITSVTVASGLLSDLDFAKEIHALAVKRGFATDVAFCNSLIQMYS 342

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
             G + +A  +F  M  +  +SWTA+I GY  +G  + A++++  M  + + PD     S
Sbjct: 343 SLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDVTVAS 402

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
            L+AC+  G  D G++  + +    G          +V++  ++  + +A+E+ + M   
Sbjct: 403 ALAACASLGRLDVGIK-LHELATSKGFIRYIVVANALVEMYAKSKIIEKAIEVFKYM--- 458

Query: 315 PDGAV--WGALL-GACKIHKNVE 334
           PD  V  W +++ G C  HKN E
Sbjct: 459 PDKDVISWSSMIAGFCFNHKNFE 481



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 120/249 (48%), Gaps = 6/249 (2%)

Query: 76  FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLEL 135
           FGL L    GN +++M V+ G   +  K+F ++PE+ + +WN M+ GY + G     L+L
Sbjct: 127 FGLRL----GNAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDL 182

Query: 136 YREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR 195
           Y  M   G  PD  TF  VL SC  +   ++G EV   +   G G    + NAL+ MYA+
Sbjct: 183 YHRMLWAGARPDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAK 242

Query: 196 CGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSV 255
           CG+++ AR +FDGM     +SW A+I G+  +   E  ++LF  ML+  + P+     SV
Sbjct: 243 CGDVEAARKVFDGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSV 302

Query: 256 LSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEP 315
             A       D   E  + +  K G          ++ +    G++ EA  +   M    
Sbjct: 303 TVASGLLSDLDFAKE-IHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETR- 360

Query: 316 DGAVWGALL 324
           D   W A++
Sbjct: 361 DAMSWTAMI 369



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 7/244 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLW---LGMCC 69
           + +NA+I+G+  N      + LF  M E  VE N   ++ +  + V  G L         
Sbjct: 262 ISWNAMIAGHFENHECEAGLELFLHMLEDEVEPN---LMTITSVTVASGLLSDLDFAKEI 318

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H + VK G   D +  N L+ MY   G +     +F ++  +  ++W AMISGY +NG  
Sbjct: 319 HALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFP 378

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              LE+Y  M+   V PD VT    L++CA LG   VG+++ +   + GF     + NAL
Sbjct: 379 DKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGFIRYIVVANAL 438

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           + MYA+   ++KA  +F  MP K V+SW+++I G+  +     A+  F  ML + ++P+ 
Sbjct: 439 VEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHML-ADVKPNS 497

Query: 250 TAFV 253
             F+
Sbjct: 498 VTFI 501


>gi|413946615|gb|AFW79264.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 682

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 191/513 (37%), Positives = 294/513 (57%), Gaps = 18/513 (3%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N++I+GY+    +  ++ +   M  +  + + V+ + +L  C       LG   H   +
Sbjct: 177 FNSMINGYLDRGQLDGSLGIVRNMTGEAEKWDYVSYVAVLGHCASMKDSVLGAQVHAQAL 236

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K  L+L+  VG+ L+ MY KC  V    + F+ +PEK +++W A+++ Y QN L    L+
Sbjct: 237 KKRLELNVYVGSALVDMYGKCDHVHDANRAFEVLPEKNVVSWTAVMTAYTQNELYEDALQ 296

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+ +M+  GV P+  T+   L+SCA L A   G  +   +   G   +  ++NAL+NMY+
Sbjct: 297 LFLDMEMEGVQPNEFTYAVALNSCAGLAALRTGNALGACVMKTGHWDHLLVSNALMNMYS 356

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           + G+++ A  +F  MP + VVSW  II GY  HG     ++ F  ML + + P    FV 
Sbjct: 357 KSGSIEDAHRVFISMPLRDVVSWNLIITGYAHHGLAREGMEAFHSMLSAAVIPSYVTFVG 416

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           VLSAC+  GL D+   Y   M  + G+ PG EHYTCMV LL R G+L+EA   I +  + 
Sbjct: 417 VLSACAQLGLVDEAFYYLNTMMKEVGITPGKEHYTCMVGLLCRVGRLDEAERFIVNNCIG 476

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
            D   W +LL +C+++KN  L      ++++LEP + G YVLLSN+Y++A   DG+++VR
Sbjct: 477 TDVVAWRSLLNSCQVYKNYGLGHRVAEQILQLEPSDVGTYVLLSNMYAKANRWDGVVKVR 536

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE-------- 426
             MRER ++K PG S++ +   VH+F   ++ H Q  +I + L++L + ++         
Sbjct: 537 KHMRERAVRKSPGVSWIHVGSDVHVFTSEEKVHPQMDQIAKKLEELIDQIKAIGYVPNFA 596

Query: 427 ---HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFI 483
              HD     D +  EEHL     HSEKLA+AFG+I+T  G  I +MKNLRIC DCH+ I
Sbjct: 597 VVLHD----IDDERKEEHL---MYHSEKLALAFGLIHTPKGATIHIMKNLRICDDCHVAI 649

Query: 484 KLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           KL+S +  R+ +VRDA RFH  + G CSC DYW
Sbjct: 650 KLISVVTSRKIVVRDAVRFHCIEGGICSCNDYW 682



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 3/249 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V  N L+SGY  +    E++ L   +R     +N   +   +    +     +G  CH 
Sbjct: 76  AVSANLLMSGYASSGRHKESLQL---LRVVDFGMNEYVLSAAVSATANVRSYDMGRQCHG 132

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             VK G      V N ++ MY +C  ++   K+F+ V       +N+MI+GY   G    
Sbjct: 133 YAVKAGFAEQRYVFNAVLYMYCQCAHMEDASKVFESVSGFDAFAFNSMINGYLDRGQLDG 192

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L + R M       D V++V VL  CA +    +G +V  Q        N ++ +AL++
Sbjct: 193 SLGIVRNMTGEAEKWDYVSYVAVLGHCASMKDSVLGAQVHAQALKKRLELNVYVGSALVD 252

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY +C ++  A   F+ +P K VVSWTA++  Y  +   E A+QLF +M   G++P+   
Sbjct: 253 MYGKCDHVHDANRAFEVLPEKNVVSWTAVMTAYTQNELYEDALQLFLDMEMEGVQPNEFT 312

Query: 252 FVSVLSACS 260
           +   L++C+
Sbjct: 313 YAVALNSCA 321



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 102/212 (48%), Gaps = 2/212 (0%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V + A+++ Y  N L  +A+ LF  M  +GV+ N  T    L  C     L  G     
Sbjct: 275 VVSWTAVMTAYTQNELYEDALQLFLDMEMEGVQPNEFTYAVALNSCAGLAALRTGNALGA 334

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             +K G      V N LM MY K GS++   ++F  +P + +++WN +I+GYA +GLA  
Sbjct: 335 CVMKTGHWDHLLVSNALMNMYSKSGSIEDAHRVFISMPLRDVVSWNLIITGYAHHGLARE 394

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLG-AHSVGLEVEQQIQANGFGSNPFLNNALI 190
            +E +  M S  V P  VTFVGVLS+CA LG        +   ++  G          ++
Sbjct: 395 GMEAFHSMLSAAVIPSYVTFVGVLSACAQLGLVDEAFYYLNTMMKEVGITPGKEHYTCMV 454

Query: 191 NMYARCGNLKKA-RAIFDGMPRKTVVSWTAII 221
            +  R G L +A R I +      VV+W +++
Sbjct: 455 GLLCRVGRLDEAERFIVNNCIGTDVVAWRSLL 486



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 127/269 (47%), Gaps = 10/269 (3%)

Query: 80  LDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM 139
            D  + N L++ Y KCG V   R +FD +P +  ++ N ++SGYA +G     L+L R +
Sbjct: 43  FDVVLHNNLISFYAKCGRVGLARTVFDAMPFRNAVSANLLMSGYASSGRHKESLQLLR-V 101

Query: 140 KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNL 199
              G+  +       +S+ A++ ++ +G +        GF    ++ NA++ MY +C ++
Sbjct: 102 VDFGM--NEYVLSAAVSATANVRSYDMGRQCHGYAVKAGFAEQRYVFNAVLYMYCQCAHM 159

Query: 200 KKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC 259
           + A  +F+ +      ++ ++I GY   G  + ++ +   M     + D  ++V+VL  C
Sbjct: 160 EDASKVFESVSGFDAFAFNSMINGYLDRGQLDGSLGIVRNMTGEAEKWDYVSYVAVLGHC 219

Query: 260 SHAGLTDKGL-EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGA 318
             A + D  L    +    K  L+      + +VD+ G+   +++A    E +L E +  
Sbjct: 220 --ASMKDSVLGAQVHAQALKKRLELNVYVGSALVDMYGKCDHVHDANRAFE-VLPEKNVV 276

Query: 319 VWGALLGACKIHKNVELAELAFGKVIKLE 347
            W A++ A   +   EL E A    + +E
Sbjct: 277 SWTAVMTA---YTQNELYEDALQLFLDME 302


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 193/551 (35%), Positives = 307/551 (55%), Gaps = 38/551 (6%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE   +++L +C NA+ S YV   L  EA+ +   M + G+  + ++ML  +  C   
Sbjct: 292 LFDE-YGASNLDLC-NAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQL 349

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
             +  G  CH   ++ G +   ++ N L+ MY+KC   D   ++FD++  K ++TWN+++
Sbjct: 350 RNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIV 409

Query: 121 SGYAQNGLATHVLELYREMKSLGVCP--------------------------------DA 148
           +GY +NG      E +  M    +                                  D 
Sbjct: 410 AGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDG 469

Query: 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208
           VT + + S+C HLGA  +   +   I+ N    +  L   L++M++RCG+ + A +IF+ 
Sbjct: 470 VTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNS 529

Query: 209 MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
           +  + V +WTA IG   + G+ E A++LF+EM++ G++PDG  F+  L+AC H GL  +G
Sbjct: 530 LTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGVVFIGALTACCHGGLVQQG 589

Query: 269 LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACK 328
            E F  M+  +G+ P   HY CMVDLLGRAG L EAL+LI+ M  EP+  +W +LL AC+
Sbjct: 590 KEIFNSMEKLHGVSPEDVHYGCMVDLLGRAGLLEEALQLIKDMPTEPNDVIWNSLLAACR 649

Query: 329 IHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGY 388
           +  NVE+A  A  K+  L P  TG YVLLSN+Y+ A   + + +VR+ M+E+ L+K PG 
Sbjct: 650 VQGNVEMAAFAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGT 709

Query: 389 SYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----HDGTKRSDQKNSEEHLND 444
           S ++++G+ H F  GD +H +  +I  MLD+L     +     D +      + +E +  
Sbjct: 710 SVIQIRGKTHEFTSGDESHPEMRKIEAMLDELSQRASDLGHVPDLSNVLMDVDEQEKIFM 769

Query: 445 TEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHH 504
              HSEKLA+AFG+I+++ GT I ++KNLR+C  CH F K  SK+ +R+ I+RD  RFH 
Sbjct: 770 LSRHSEKLAMAFGLISSNKGTTIRIVKNLRVCSYCHSFAKFASKVYNREIILRDNNRFHF 829

Query: 505 FKSGFCSCKDY 515
            + G CSC D+
Sbjct: 830 IRQGKCSCSDF 840



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 117/384 (30%), Positives = 177/384 (46%), Gaps = 41/384 (10%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVD 59
           VFDE   S    V + ++I GY       +AV LF +M R++ V  NSVTM+C++  C  
Sbjct: 190 VFDE--MSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAK 247

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              L  G   +      G++++  + + L+ MY+KC ++D  ++LFD+     L   NAM
Sbjct: 248 LEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAM 307

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
            S Y + GL    L +   M   G+ PD ++ +  +SSC+ L     G      +  NGF
Sbjct: 308 ASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGF 367

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
            S   + NALI+MY +C     A  IFD M  KTVV+W +I+ GY  +G  + A + F+ 
Sbjct: 368 ESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNT 427

Query: 240 MLKSGI--------------------------------RPDGTAFVSVLSACSHAGLTD- 266
           M +  I                                  DG   +S+ SAC H G  D 
Sbjct: 428 MPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDL 487

Query: 267 KGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
               Y+Y  KN+  +Q      T +VD+  R G    A+ +  S L   D + W A +GA
Sbjct: 488 AKWIYYYIEKNR--IQLDVRLGTTLVDMFSRCGDPESAMSIFNS-LTNRDVSAWTAAIGA 544

Query: 327 CKIHKNVELAELAFGKVIK--LEP 348
             +  NVE A   F ++I+  L+P
Sbjct: 545 MAMAGNVERAIELFNEMIEQGLKP 568



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 79/248 (31%), Positives = 132/248 (53%), Gaps = 1/248 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           YN+LI GY  + L  EA+ LF +M   G+  +  T    L +C        G+  H + +
Sbjct: 101 YNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLII 160

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           K     D  V N L+  Y +CG +D  RK+FD++ E+ +++W +MI GYA+   A   ++
Sbjct: 161 KMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVD 220

Query: 135 L-YREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
           L +R ++   V P++VT V V+S+CA L     G +V   I+ +G   N  + +AL++MY
Sbjct: 221 LFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMY 280

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
            +C  +  A+ +FD      +    A+   Y   G  + A+ + + M+ SGIRPD  + +
Sbjct: 281 MKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISML 340

Query: 254 SVLSACSH 261
           S +S+CS 
Sbjct: 341 SAISSCSQ 348



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 118/245 (48%), Gaps = 6/245 (2%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCG---SVDYGRKLFDQVPEKGL-ITWNAMISGYAQ 125
           H    K GLD D S    L+    + G   S+ + +++F+     G    +N++I GYA 
Sbjct: 51  HLSLTKQGLDDDVSAITKLVARSCELGTRESLSFAKEVFENGESYGTCFMYNSLIRGYAS 110

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
           +GL    + L+  M + G+ PD  TF   LS CA       G+++   I    +  + F+
Sbjct: 111 SGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLIIKMDYAKDLFV 170

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS-G 244
            N+L++ YA CG L  AR +FD M  + VVSWT++I GY      + AV LF  M++   
Sbjct: 171 QNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDED 230

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
           + P+    V V+SAC+     + G E  Y      G++      + +VD+  +   ++ A
Sbjct: 231 VIPNSVTMVCVISACAKLEDLETG-EKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIA 289

Query: 305 LELIE 309
             L +
Sbjct: 290 KRLFD 294


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 194/508 (38%), Positives = 295/508 (58%), Gaps = 17/508 (3%)

Query: 22  YVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGY------LWLGMCCHCICVK 75
           Y +N LV     L  +MRE G++++ +T+        DP        L+  + C   C K
Sbjct: 109 YTVNFLVQACTGL--RMRETGLQVHGMTIR--RGFDNDPHVQTGLISLYAELGCLDSCHK 164

Query: 76  FGLDL---DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               +   DF     ++T   +CG V + RKLF+ +PE+  I WNAMISGYAQ G +   
Sbjct: 165 VFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREA 224

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L ++  M+  GV  + V  + VLS+C  LGA   G      I+ N       L   L+++
Sbjct: 225 LNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDL 284

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG+++KA  +F GM  K V +W++ + G  ++G GE  ++LF  M + G+ P+   F
Sbjct: 285 YAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTF 344

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           VSVL  CS  G  D+G  +F  M+N++G++P  EHY C+VDL  RAG+L +A+ +I+ M 
Sbjct: 345 VSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMP 404

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           ++P  AVW +LL A +++KN+EL  LA  K+++LE  N G YVLLSNIY+++ + D +  
Sbjct: 405 MKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSH 464

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ----EHD 428
           VR  M+ + ++K PG S +E+ G VH F VGD++H +  +I  +   +   ++    + D
Sbjct: 465 VRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKAD 524

Query: 429 GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
            T      + EE  +   +HSEK AIAFGI++      I ++KNLR+CGDCH    ++SK
Sbjct: 525 TTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISK 584

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           I +R+ IVRD  RFHHFK G CSC  +W
Sbjct: 585 IFNREIIVRDRNRFHHFKDGHCSCNGFW 612



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 124/233 (53%), Gaps = 4/233 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +NA+ISGY       EA+++F  M+ +GV++N V M+ +L  C   G L  G   H  
Sbjct: 206 IAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSY 265

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             +  + +   +   L+ +Y KCG ++   ++F  + EK + TW++ ++G A NG     
Sbjct: 266 IERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKC 325

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
           LEL+  MK  GV P+AVTFV VL  C+ +G    G      ++ N FG  P L +   L+
Sbjct: 326 LELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMR-NEFGIEPQLEHYGCLV 384

Query: 191 NMYARCGNLKKARAIFDGMPRKT-VVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
           ++YAR G L+ A +I   MP K     W++++    ++ + E+ V    +ML+
Sbjct: 385 DLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLE 437



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 120/261 (45%), Gaps = 37/261 (14%)

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG--VCPDAVTFVGVL 155
           +DY  ++ D+  +  L   N+MI  + ++ +     + YR + S G  + PD  T   ++
Sbjct: 56  LDYANQILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLV 115

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA--------------------- 194
            +C  L     GL+V       GF ++P +   LI++YA                     
Sbjct: 116 QACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFV 175

Query: 195 ----------RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
                     RCG++  AR +F+GMP +  ++W A+I GY   G    A+ +F  M   G
Sbjct: 176 CRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEG 235

Query: 245 IRPDGTAFVSVLSACSHAGLTDKG-LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
           ++ +G A +SVLSAC+  G  D+G   + Y  +NK  ++      T +VDL  + G + +
Sbjct: 236 VKVNGVAMISVLSACTQLGALDQGRWAHSYIERNK--IKITVRLATTLVDLYAKCGDMEK 293

Query: 304 ALELIESMLVEPDGAVWGALL 324
           A+E+   M  E +   W + L
Sbjct: 294 AMEVFWGM-EEKNVYTWSSAL 313


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 202/516 (39%), Positives = 285/516 (55%), Gaps = 45/516 (8%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            + ++ +I+ Y  +    EAV +F +MR+  V  N  T   +L  C     L LG   HC
Sbjct: 306 VIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHC 365

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT-WNAMISGYAQNGLAT 130
             +K GL  D  V N LM +Y KCG ++    LF + P +  +T WN +I G+ Q G   
Sbjct: 366 HVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVIVGHVQLGDGE 425

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
             L L+  M    V    VT+   L +CA L A   GL++        F  +  + NALI
Sbjct: 426 KALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALI 485

Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
           +MYA+CG++K AR +FD M ++  VSW A+I GY +HG                      
Sbjct: 486 DMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHG---------------------- 523

Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
                  AC++AGL D+G  YF  M   +G++P  EHYTCMV LLGR G L++A++LI+ 
Sbjct: 524 ------LACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDE 577

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
           +  +P   VW ALLGAC IH ++EL  ++   V+++EP +   +VLLSN+Y+ A+  D +
Sbjct: 578 IPFQPSVMVWRALLGACVIHNDIELGRISAQHVLEMEPQDKATHVLLSNMYATAKRWDNV 637

Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
             VR  M+ + +KK+PG S++E +G VH F VGD +H +   I  ML+ L      H  T
Sbjct: 638 ASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWL------HMKT 691

Query: 431 KRSDQ-KNSEEHLNDTE---------VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCH 480
           K++    N    L D E         VHSE+LA++FGII T  G+ I +MKNLRIC DCH
Sbjct: 692 KKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCH 751

Query: 481 LFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
             IK +SK+V R+ +VRD  RFHHF+ G CSC DYW
Sbjct: 752 AAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 787



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 157/327 (48%), Gaps = 9/327 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +    T+ +  LI GY  +    EA+ LF ++  +G E+N      +L + V  
Sbjct: 95  LFDEMPERN--TISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSM 152

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
               LG   H    K G + +  VG  L+  Y  CG VD  R++FD +  K +++W  M+
Sbjct: 153 DCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMV 212

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           + +A+N      L+L+ +M+ +G  P+  TF  V  +C  L A  VG  V      + + 
Sbjct: 213 TCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYE 272

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            + ++  AL+++Y + G++  AR  F+ +P+K V+ W+ +I  Y      + AV++F +M
Sbjct: 273 LDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQM 332

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEY---FYGMKNKYGLQPGPEHYTCMVDLLGR 297
            ++ + P+   F SVL AC+    T +GL      +    K GL         ++D+  +
Sbjct: 333 RQALVLPNQFTFASVLQACA----TMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAK 388

Query: 298 AGQLNEALELIESMLVEPDGAVWGALL 324
            G++  ++ L        D   W  ++
Sbjct: 389 CGRMENSMXLFAESPHRNDVTPWNTVI 415



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 145/336 (43%), Gaps = 33/336 (9%)

Query: 44  EINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRK 103
           E NS      L  C+       G   HC  +K G  LD    N L+ MYVK   +    K
Sbjct: 35  EFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASK 94

Query: 104 LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163
           LFD++PE+  I++  +I GYA++      +EL+  +   G   +   F  +L     +  
Sbjct: 95  LFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSMDC 154

Query: 164 HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGG 223
             +G  +   I   G  SN F+  ALI+ Y+ CG +  AR +FDG+  K +VSWT ++  
Sbjct: 155 GELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTC 214

Query: 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG-------------LE 270
           +  +   + A++LF +M   G +P+   F SV  AC      D G             L+
Sbjct: 215 FAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELD 274

Query: 271 YFYGM-------------KNKYGLQPGPEH----YTCMVDLLGRAGQLNEALELIESM-- 311
            + G+               +   +  P+     ++ M+    ++ Q  EA+E+   M  
Sbjct: 275 LYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQ 334

Query: 312 -LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
            LV P+   + ++L AC   + + L       VIK+
Sbjct: 335 ALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKI 370


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 179/511 (35%), Positives = 287/511 (56%), Gaps = 8/511 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V + A+I G   N L  EA+  F +M+ QG++++      +LP C   G +  G   H 
Sbjct: 235 SVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHA 294

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
             ++        VG+ L+ MY KC  + Y + +FD++ +K +++W AM+ GY Q G A  
Sbjct: 295 CIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEE 354

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            ++++ +M+  G+ PD  T    +S+CA++ +   G +   +   +G      ++N+L+ 
Sbjct: 355 AVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVT 414

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           +Y +CG++  +  +F+ M  +  VSWTA++  Y   G     +QLFD+M++ G++PDG  
Sbjct: 415 LYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVT 474

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
              V+SACS AGL +KG  YF  M ++YG+ P   HY+CM+DL  R+G+L EA+  I  M
Sbjct: 475 LTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGM 534

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
              PD   W  LL AC+   N+E+ + A   +I+L+P +   Y LLS+IY+     D + 
Sbjct: 535 PFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVA 594

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
           ++R  MRE+ +KK+PG S+++ KG++H F   D +     +IY  L++L N +   D   
Sbjct: 595 QLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKII--DNGY 652

Query: 432 RSDQKNSEEHLNDT------EVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
           + D       + +         HSE+LAIAFG+I    G  I V KNLR+C DCH   K 
Sbjct: 653 KPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKH 712

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +S +  R+ +VRDA RFH FK G CSC D+W
Sbjct: 713 ISSVTGREILVRDAVRFHRFKDGTCSCGDFW 743



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 119/370 (32%), Positives = 184/370 (49%), Gaps = 37/370 (10%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +N LI GY L+ LV  AV  +  M R+    +  VT++ +L +    G++ LG   H 
Sbjct: 104 VTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHG 163

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLF-------------------------D 106
             +K G +    VG+ L+ MY   G +   +K+F                         D
Sbjct: 164 QVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIED 223

Query: 107 QVP-----EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL 161
            +      EK  ++W AMI G AQNGLA   +E +REMK  G+  D   F  VL +C  L
Sbjct: 224 ALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGL 283

Query: 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
           GA + G ++   I    F  + ++ +ALI+MY +C  L  A+ +FD M +K VVSWTA++
Sbjct: 284 GAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMV 343

Query: 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281
            GYG  G  E AV++F +M +SGI PD       +SAC++    ++G + F+G     GL
Sbjct: 344 VGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQ-FHGKAITSGL 402

Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA-CKIHKNVELAELAF 340
                    +V L G+ G ++++  L   M V  D   W A++ A  +  + VE  +L F
Sbjct: 403 IHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVR-DAVSWTAMVSAYAQFGRAVETIQL-F 460

Query: 341 GKVIK--LEP 348
            K+++  L+P
Sbjct: 461 DKMVQHGLKP 470



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 109/223 (48%), Gaps = 7/223 (3%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYRE-MKSLGV 144
           N L+  Y K G +      F+++P++  +TWN +I GY+ +GL    ++ Y   M+    
Sbjct: 76  NNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSA 135

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARA 204
               VT + +L   +  G  S+G ++  Q+   GF S   + + L+ MYA  G +  A+ 
Sbjct: 136 NLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKK 195

Query: 205 IFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL 264
           +F G+  +  V + +++GG    G  E A+QLF      G+  D  ++ +++   +  GL
Sbjct: 196 VFYGLDDRNTVMYNSLMGGLLACGMIEDALQLF-----RGMEKDSVSWAAMIKGLAQNGL 250

Query: 265 TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
             + +E F  MK + GL+     +  ++   G  G +NE  ++
Sbjct: 251 AKEAIECFREMKVQ-GLKMDQYPFGSVLPACGGLGAINEGKQI 292


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 207/511 (40%), Positives = 292/511 (57%), Gaps = 17/511 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQ-GVEINS-VTMLCLLPICVDPGYLWLGMCCH 70
           V  NA+IS    +  V EA +LF  M E+     NS +T  C L        ++      
Sbjct: 77  VANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCKLGDINSARLMF-----D 131

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV-PEKGLITWNAMISGYAQNGLA 129
           C  VK     D    N ++  Y K   +   ++LF  +   +  +TWN MIS Y Q G  
Sbjct: 132 CNPVK-----DVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEF 186

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              + ++++M+S  V P  VT V +LS+CAHLGA  +G  +   I+      +  L NAL
Sbjct: 187 GTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNAL 246

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           I+MY +CG L+ A  +F G+ RK +  W +II G G++G GE A+  F  M K GI+PDG
Sbjct: 247 IDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDG 306

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
             FV +LS CSH+GL   G  YF  M   YGL+PG EHY CMVDLLGRAG L EALELI 
Sbjct: 307 VTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIR 366

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDG 369
           +M ++P+  V G+LL AC+IHK+ +L E    ++++L+P + G YV LSN+Y+     D 
Sbjct: 367 AMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDD 426

Query: 370 IMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLV--QEH 427
           +   R +M +R + K PG S +E+   VH F+ GD +H Q  +I   LD++   +  Q H
Sbjct: 427 VNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGH 486

Query: 428 DGTKRSDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
                +   + EE   +  +  HSE++A+AFG+++T PG  I V+KNLR C DCH  +KL
Sbjct: 487 VPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKL 546

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +S    R+ IVRD  RFHHF++G CSC DYW
Sbjct: 547 ISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 577



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 119/238 (50%), Gaps = 4/238 (1%)

Query: 8   STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
           S   +V +N +IS YV       A+S+F +M+ + V+   VTM+ LL  C   G L +G 
Sbjct: 166 SARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGE 225

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
             H       L +D  +GN L+ MY KCG+++    +F  +  K +  WN++I G   NG
Sbjct: 226 WIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNG 285

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
                +  +  M+  G+ PD VTFVG+LS C+H G  S G     ++    +G  P + +
Sbjct: 286 RGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGV-YGLEPGVEH 344

Query: 188 --ALINMYARCGNLKKARAIFDGMPRK-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
              ++++  R G LK+A  +   MP K   +   +++    IH   ++  Q+  ++L+
Sbjct: 345 YGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLE 402



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 126/293 (43%), Gaps = 19/293 (6%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
           +L  C   G   LG   HC  +K G + D  +   L+  Y K G +   +++F  +P + 
Sbjct: 16  ILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAKRVFMGMPRRD 75

Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
           ++  NAMIS  +++G       L+  M     C    ++  +++    LG  +    +  
Sbjct: 76  VVANNAMISALSKHGYVEEARNLFDNMTERNSC----SWNSMITCYCKLGDINSARLM-- 129

Query: 173 QIQANGFGSNPFLN----NALINMYARCGNLKKARAIFDGM-PRKTVVSWTAIIGGYGIH 227
                 F  NP  +    NA+I+ Y +   L  A+ +F  M   +  V+W  +I  Y   
Sbjct: 130 ------FDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQC 183

Query: 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH 287
           G    A+ +F +M    ++P     VS+LSAC+H G  D G E+ +G      L+     
Sbjct: 184 GEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMG-EWIHGYIRTKRLKIDVVL 242

Query: 288 YTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
              ++D+  + G L  A+++    L   +   W +++    ++   E A  AF
Sbjct: 243 GNALIDMYCKCGALEAAIDVFHG-LSRKNIFCWNSIIVGLGMNGRGEEAIAAF 294



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 52/97 (53%)

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
           V P   +F  +L SCA  G   +G     QI   GF  +  L   L++ YA+ G+LK A+
Sbjct: 6   VLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAK 65

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            +F GMPR+ VV+  A+I     HG+ E A  LFD M
Sbjct: 66  RVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNM 102


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 181/375 (48%), Positives = 244/375 (65%), Gaps = 14/375 (3%)

Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
             G+L +CA + A   G +V   I   GF  +  ++N L++MY +CG ++ A+ +F  + 
Sbjct: 1   MAGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLL 60

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270
              V SW A+I G   HG G+ AV LF++ML++G++P+   FV VLS CSHAGL D+G  
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRN 120

Query: 271 YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
           YF  M   +G+ P  EHY+CMVDL GRAG L+EAL  I  M VEP+ +VWG+LLGAC++H
Sbjct: 121 YFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVH 180

Query: 331 KNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSY 390
            N+ELAE A  ++I+L P N G YVLLSNIY+ A   D   +VR MM++R +KK+PG S+
Sbjct: 181 GNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSW 240

Query: 391 VELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEV--- 447
           +E++ +VH F+VGD +H Q  EIY  L+ L  L  +  G       N+   L+D E    
Sbjct: 241 IEVQNKVHPFIVGDSSHPQIEEIYETLETL-TLQMKAAGYI----PNTNFVLHDVEEEQK 295

Query: 448 ------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATR 501
                 HSEKLAIAFGII+T PGT I V+KNLR+CGDCH   K +S+IV R+ ++RD  R
Sbjct: 296 EWILGHHSEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHR 355

Query: 502 FHHFKSGFCSCKDYW 516
           FHHFK G CSC DYW
Sbjct: 356 FHHFKDGQCSCGDYW 370



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 119/231 (51%), Gaps = 3/231 (1%)

Query: 50  MLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP 109
           M  +L  C     L  G   H   +K G +LD SV N L+ MY KCG ++  +++F ++ 
Sbjct: 1   MAGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLL 60

Query: 110 EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLE 169
           E  + +WNAMISG AQ+G     + L+ +M   GV P+ +TFV VLS C+H G    G  
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRN 120

Query: 170 -VEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIH 227
             +   + +G        + +++++ R G L +A    + MP +   S W +++G   +H
Sbjct: 121 YFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVH 180

Query: 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278
           G+ E+A +  +++++      GT +V + +  + AG  D   +    MK++
Sbjct: 181 GNIELAERAVEQLIELTPENPGT-YVLLSNIYAAAGRWDDAGKVRKMMKDR 230



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 75/206 (36%), Gaps = 46/206 (22%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +NA+ISG   +    EAV LF +M + GV+ N +T + +L  C   G             
Sbjct: 67  WNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGL------------ 114

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT-----WNAMISGYAQNGLA 129
                                  VD GR  FD +     I+     ++ M+  + + G  
Sbjct: 115 -----------------------VDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCL 151

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSC-AHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
              L    +M    V P+A  +  +L +C  H         VEQ I+      NP     
Sbjct: 152 DEALNFINQMP---VEPNASVWGSLLGACRVHGNIELAERAVEQLIELT--PENPGTYVL 206

Query: 189 LINMYARCGNLKKARAIFDGMPRKTV 214
           L N+YA  G    A  +   M  ++V
Sbjct: 207 LSNIYAAAGRWDDAGKVRKMMKDRSV 232


>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Brachypodium distachyon]
          Length = 849

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 189/515 (36%), Positives = 304/515 (59%), Gaps = 7/515 (1%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGYLWLGM 67
           + +   +NALI  +  N   S A+ LF +M    G + +  ++  LL  C +  +L  G 
Sbjct: 335 SKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLLLACGNLKHLLHGK 394

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
             H   ++ GL+ D  +   L+++Y++CG     R LFD V EK  ++WN MI+GY+QNG
Sbjct: 395 AAHGFILRNGLEKDSFIRVSLLSVYIQCGRESLARVLFDAVEEKDEVSWNTMIAGYSQNG 454

Query: 128 LATHVLELYREMKSL--GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
           L    L+L+REM+S   G  P  +     L +C+ L A  +G E+           + FL
Sbjct: 455 LPGESLQLFREMQSKKGGHWPSLLAATSALVACSELPAVRLGKEMHCFALKADLCEDSFL 514

Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
           ++++I+MY++CG++  AR  FD +  K  VSWT +I GY ++G G+ AV L+D+M + G+
Sbjct: 515 SSSIIDMYSKCGSVDDARVFFDRLKAKDAVSWTVMITGYAVNGRGKEAVGLYDKMGREGM 574

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
            PDG  ++ +L AC HAG+ + GL +F  M+N   ++   EHY C++ +L RAG+  +A+
Sbjct: 575 EPDGFTYLGLLMACGHAGMLEDGLCFFQEMRNLPKIEAKLEHYACVIGMLSRAGRFADAV 634

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR 365
            L+E M  EPD  +  ++L AC +H  VEL +    K+++LEP    +YVL SN+Y+ +R
Sbjct: 635 ALMEVMPEEPDAKILSSVLSACHMHGEVELGKKVADKLLELEPHKAEHYVLASNMYAGSR 694

Query: 366 NLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ 425
             D + +VR M+R+  + K+PG S++++ G+V+ F+ G+ +  +  ++ +M   LE  ++
Sbjct: 695 QWDEMRKVRKMLRDAGVAKEPGCSWIDIAGKVYSFVAGENSLPEMHKVRKMWYSLEEKIR 754

Query: 426 EH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHL 481
                 D T    +   EE +     HSEK AIAFG++ T+  T++ V KN+R+C DCH 
Sbjct: 755 AAGYAPDTTVMLHELEEEEKVEALRWHSEKQAIAFGLLRTAGPTKVRVFKNIRMCKDCHN 814

Query: 482 FIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
             KL+SK+ DR+ +VRD  RFHHF+ G CSC DYW
Sbjct: 815 AAKLISKVADREIVVRDKKRFHHFRDGLCSCGDYW 849



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 153/319 (47%), Gaps = 8/319 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMR--EQGVEINSVTMLCLLPICVDPGYLWLGMCC 69
            V +N ++ GY  N     A  L  +M+  E+GV  + +TML +LP+C     L      
Sbjct: 234 VVSWNVMLGGYARNGEAGAAFGLLREMQMEERGVPADEITMLSVLPVCSGLPELAKLREL 293

Query: 70  HCICVKFGLDLDFS-VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
           H   V+ GL L    V N L+  Y +CG + +  ++FD +  K + +WNA+I  +AQNG 
Sbjct: 294 HAFVVRRGLHLTGDMVPNALIAAYGRCGCLLHACRVFDGICSKMVSSWNALIGAHAQNGE 353

Query: 129 ATHVLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
           A+  +EL+REM  + G  PD  +   +L +C +L     G      I  NG   + F+  
Sbjct: 354 ASAAIELFREMTNACGQKPDWFSIGSLLLACGNLKHLLHGKAAHGFILRNGLEKDSFIRV 413

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML--KSGI 245
           +L+++Y +CG    AR +FD +  K  VSW  +I GY  +G    ++QLF EM   K G 
Sbjct: 414 SLLSVYIQCGRESLARVLFDAVEEKDEVSWNTMIAGYSQNGLPGESLQLFREMQSKKGGH 473

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
            P   A  S L ACS       G E  +    K  L       + ++D+  + G +++A 
Sbjct: 474 WPSLLAATSALVACSELPAVRLGKE-MHCFALKADLCEDSFLSSSIIDMYSKCGSVDDAR 532

Query: 306 ELIESMLVEPDGAVWGALL 324
              + +  + D   W  ++
Sbjct: 533 VFFDRLKAK-DAVSWTVMI 550



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 113/223 (50%), Gaps = 7/223 (3%)

Query: 46  NSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLF 105
           +  T++ +LP+C    +   G   H + VK G D    V N L+ MY KCG +      F
Sbjct: 164 DEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPRVSNVLVDMYAKCGEMADAECAF 223

Query: 106 DQVPE---KGLITWNAMISGYAQNGLATHVLELYREMK--SLGVCPDAVTFVGVLSSCAH 160
            + P    + +++WN M+ GYA+NG A     L REM+    GV  D +T + VL  C+ 
Sbjct: 224 LEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQMEERGVPADEITMLSVLPVCSG 283

Query: 161 LGAHSVGLEVEQQIQANGFG-SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
           L   +   E+   +   G   +   + NALI  Y RCG L  A  +FDG+  K V SW A
Sbjct: 284 LPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYGRCGCLLHACRVFDGICSKMVSSWNA 343

Query: 220 IIGGYGIHGHGEVAVQLFDEMLKS-GIRPDGTAFVSVLSACSH 261
           +IG +  +G    A++LF EM  + G +PD  +  S+L AC +
Sbjct: 344 LIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLLLACGN 386



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/272 (32%), Positives = 132/272 (48%), Gaps = 17/272 (6%)

Query: 66  GMCCHCICVKFGL-DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYA 124
           G   H +  K GL D D  VGN L++MY +CG VD   K+F+ +  + L++WNA+++  A
Sbjct: 82  GRQVHAVAAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVA 141

Query: 125 QNGLATHVLELYRE-MKSLG--VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGS 181
                   LEL+R+ ++ LG    PD  T V VL  CA L     G  V      +G+ +
Sbjct: 142 D---PRRGLELFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDA 198

Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPR---KTVVSWTAIIGGYGIHGHGEVAVQLFD 238
            P ++N L++MYA+CG +  A   F   P    + VVSW  ++GGY  +G    A  L  
Sbjct: 199 APRVSNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLR 258

Query: 239 EML--KSGIRPDGTAFVSVLSACSHAGLTD-KGLEYFYGMKNKYGLQ-PGPEHYTCMVDL 294
           EM   + G+  D    +SVL  CS  GL +   L   +    + GL   G      ++  
Sbjct: 259 EMQMEERGVPADEITMLSVLPVCS--GLPELAKLRELHAFVVRRGLHLTGDMVPNALIAA 316

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
            GR G L  A  + + +  +   + W AL+GA
Sbjct: 317 YGRCGCLLHACRVFDGICSKMVSS-WNALIGA 347



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 99/224 (44%), Gaps = 22/224 (9%)

Query: 113 LITWNAMISGYAQNGLATHVLELYREM--KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEV 170
           L  WN +++  ++ G     L +   +   S GV PD  T    L SC       V    
Sbjct: 30  LPQWNGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKSCRGDDGRQVHAVA 89

Query: 171 EQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHG 230
            +   A+G   +PF+ N+L++MY RCG +  A  +F+GM  + +VSW A++        G
Sbjct: 90  AKLGLADG---DPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVADPRRG 146

Query: 231 EVAVQLFDEMLKS---GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH 287
              ++LF + L+       PD    V+VL  C+     + G    +G+  K G    P  
Sbjct: 147 ---LELFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETG-RAVHGLAVKSGWDAAPRV 202

Query: 288 YTCMVDLLGRAGQLNEALELIESMLVE-PDGA-----VWGALLG 325
              +VD+  + G++ +A    E   +E P GA      W  +LG
Sbjct: 203 SNVLVDMYAKCGEMADA----ECAFLEAPPGAGRNVVSWNVMLG 242



 Score = 42.7 bits (99), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF + +K+    V +  +I+GY +N    EAV L+ KM  +G+E +  T L LL  C   
Sbjct: 533 VFFDRLKAKD-AVSWTVMITGYAVNGRGKEAVGLYDKMGREGMEPDGFTYLGLLMACGHA 591

Query: 61  GYLWLGMC 68
           G L  G+C
Sbjct: 592 GMLEDGLC 599


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 189/510 (37%), Positives = 310/510 (60%), Gaps = 8/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +  +I+GY  N    EA+ LF  + ++ +EI+ + +  +L        + +    HC 
Sbjct: 453 ISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCH 512

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ GL LD  + N L+ +Y KC ++ Y  ++F+ +  K +++W +MIS  A NG  +  
Sbjct: 513 ILRKGL-LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEA 571

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           +EL+R M   G+  D+V  + +LS+ A L A + G E+   +   GF     +  A+++M
Sbjct: 572 VELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDM 631

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA CG+L+ A+A+FD + RK ++ +T++I  YG+HG G+ AV+LFD+M    + PD  +F
Sbjct: 632 YACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISF 691

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           +++L ACSHAGL D+G  +   M+++Y L+P PEHY C+VD+LGRA  + EA E ++ M 
Sbjct: 692 LALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMK 751

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            EP   VW ALL AC+ H   E+ E+A  ++++LEP N G  VL+SN+++E    + + +
Sbjct: 752 TEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEK 811

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR  M+   ++K PG S++E+ G+VH F   D++H ++ EIY  L ++   ++   G   
Sbjct: 812 VRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLEREVGYV- 870

Query: 433 SDQKNSEEHLNDTEV------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
           +D K    ++++ E       HSE++AIA+G++ T     + + KNLR+C DCH F KLV
Sbjct: 871 ADTKFVLHNVDEGEKVQMLHGHSERIAIAYGLLRTPDRACLRITKNLRVCRDCHTFCKLV 930

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SK+  R  ++RDA RFHHF+SG CSC D W
Sbjct: 931 SKLFRRDIVMRDANRFHHFESGLCSCGDSW 960



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 189/409 (46%), Gaps = 39/409 (9%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE    T     +N +I  YV N   + A++L+  MR +GV +   +   LL  C   
Sbjct: 138 VFDEMPDRT--AFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKL 195

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG-LITWNAM 119
             +  G   H + VK G      + N L++MY K   +   R+LFD   EKG  + WN++
Sbjct: 196 RDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSI 255

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI-QANG 178
           +S Y+ +G +   LEL+REM   G  P++ T V  L++C       +G E+   + +++ 
Sbjct: 256 LSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSST 315

Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
             S  ++ NALI MY RCG + +A  I   M    VV+W ++I GY  +   + A++ F 
Sbjct: 316 HSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFS 375

Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL---- 294
           +M+ +G + D  +  S+++A         G+E  +    K+G     +    ++D+    
Sbjct: 376 DMIAAGHKSDEVSMTSIIAASGRLSNLLAGME-LHAYVIKHGWDSNLQVGNTLIDMYSKC 434

Query: 295 -----LGRA-------------------GQLN---EALELIESML---VEPDGAVWGALL 324
                +GRA                    Q +   EALEL   +    +E D  + G++L
Sbjct: 435 NLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSIL 494

Query: 325 GACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
            A  + K++ + +     +++   ++T     L ++Y + RN+    RV
Sbjct: 495 RASSVLKSMLIVKEIHCHILRKGLLDTVIQNELVDVYGKCRNMGYATRV 543



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 119/251 (47%), Gaps = 7/251 (2%)

Query: 77  GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY 136
             +LDF  G  L+ MY KCGS+D   K+FD++P++    WN MI  Y  NG     L LY
Sbjct: 112 SFELDFLAGK-LVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALY 170

Query: 137 REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196
             M+  GV     +F  +L +CA L     G E+   +   G+ S  F+ NAL++MYA+ 
Sbjct: 171 WNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKN 230

Query: 197 GNLKKARAIFDGMPRK-TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSV 255
            +L  AR +FDG   K   V W +I+  Y   G     ++LF EM  +G  P+    VS 
Sbjct: 231 DDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSA 290

Query: 256 LSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC--MVDLLGRAGQLNEALELIESMLV 313
           L+AC        G E    +          E Y C  ++ +  R G++ +A  ++  M  
Sbjct: 291 LTACDGFSYAKLGKEIHASVLKSS--THSSELYVCNALIAMYTRCGKMPQAERILRQM-N 347

Query: 314 EPDGAVWGALL 324
             D   W +L+
Sbjct: 348 NADVVTWNSLI 358


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 183/441 (41%), Positives = 270/441 (61%), Gaps = 5/441 (1%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM- 139
           D  +   +++ Y+  G+V    K F+ +P + L++WNA+++GY +N  A   L L+R M 
Sbjct: 173 DAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMV 232

Query: 140 KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNL 199
           +   V P+A T   VL  C++L A   G ++ Q         N  +  +L++MY +CG+L
Sbjct: 233 REANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDL 292

Query: 200 KKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC 259
             A  +F  M  + VV+W A+I GY  HG G+ A+ LF+ M   G+ P+   FV VL+AC
Sbjct: 293 SSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTAC 352

Query: 260 SHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAV 319
            H GL D G++ F GM+  YG++P  +HY+CMVDLL RAG+L  A++ I SM  EP  + 
Sbjct: 353 IHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMPFEPHPSA 412

Query: 320 WGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379
           +G LL AC+++KN+E AELA GK+I+ +P + G YV L+NIY+ A   D + RVR  M++
Sbjct: 413 YGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAVANQWDDVSRVRRWMKD 472

Query: 380 RRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSD--QKN 437
             + K PGYS++E+KG +H F   DR H Q   I+  L +L   ++E       D    +
Sbjct: 473 NTVVKTPGYSWIEIKGVLHEFRSNDRLHPQLYLIHEKLGQLAERMKEMGYVPDLDFVLHD 532

Query: 438 SEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFI 495
            +E +    +  HSEKLAIAFG+I+T+ G  + + KNLR+CGDCH   K++S I DR+ I
Sbjct: 533 VDETMKVQMLMRHSEKLAIAFGLISTAHGMTLRIFKNLRVCGDCHNAAKVISMIEDREII 592

Query: 496 VRDATRFHHFKSGFCSCKDYW 516
           +RD TRFHHF+ G CSC DYW
Sbjct: 593 LRDTTRFHHFRGGHCSCDDYW 613



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/201 (34%), Positives = 113/201 (56%), Gaps = 4/201 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +NA+++GYV NS   +A+ LF  M RE  V+ N+ T+  +L  C +   L  G   H 
Sbjct: 206 VSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQ 265

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
            C+K  L  + +VG  L++MY KCG +     LF ++  + ++ WNAMISGYAQ+G    
Sbjct: 266 WCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKE 325

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN--NAL 189
            + L+  MK  GV P+ +TFV VL++C H G    G++  + +Q   +G  P ++  + +
Sbjct: 326 AINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQCFEGMQ-ELYGIEPRVDHYSCM 384

Query: 190 INMYARCGNLKKARAIFDGMP 210
           +++  R G L++A      MP
Sbjct: 385 VDLLCRAGKLERAVDFIRSMP 405



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 127/276 (46%), Gaps = 12/276 (4%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+  +   G  D  R+LF  +P + + +WN M+SG +++G       ++  M      
Sbjct: 84  NTLLLCHFASGDADGARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMP----V 139

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
            ++V++  ++S  A  G  S     E+  +      +  L  A+++ Y   GN+ KA   
Sbjct: 140 RNSVSWNAMVSGFACSGDMSTA---EEWFRNAPEKEDAVLWTAMVSGYMDIGNVVKAIKY 196

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK-SGIRPDGTAFVSVLSACSHAGL 264
           F+ MP + +VSW A++ GY  + H + A++LF  M++ + ++P+ +   SVL  CS+   
Sbjct: 197 FEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSA 256

Query: 265 TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
              G +  +    K  L       T +V +  + G L+ A  L   M    D   W A++
Sbjct: 257 LGFGKQ-IHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTR-DVVAWNAMI 314

Query: 325 GACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLS 358
                H + + A   F ++    +EP    + V+L+
Sbjct: 315 SGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLT 350



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 112/270 (41%), Gaps = 32/270 (11%)

Query: 83  SVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL 142
           S+    +   V+ G +    + F   P K   T+N +++GYA+   A   L   R +   
Sbjct: 18  SLSTAAVAAAVRHGDLAGAEEAFVSTPRKTTATYNCLLAGYAR---APGRLADARHLFDR 74

Query: 143 GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN----NALINMYARCGN 198
              PD V++   L  C      + G           F S P  +    N +++  ++ G 
Sbjct: 75  IPTPDVVSY-NTLLLCHFASGDADGAR-------RLFASMPVRDVASWNTMVSGLSKSGA 126

Query: 199 LKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSA 258
           +++A+ +F  MP +  VSW A++ G+   G    A + F    +   + D   + +++S 
Sbjct: 127 VEEAKVVFLAMPVRNSVSWNAMVSGFACSGDMSTAEEWFRNAPE---KEDAVLWTAMVSG 183

Query: 259 CSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML----VE 314
               G   K ++YF  M  +  +      +  +V    +    ++AL L  +M+    V+
Sbjct: 184 YMDIGNVVKAIKYFEAMPVRNLVS-----WNAVVAGYVKNSHADDALRLFRTMVREANVQ 238

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVI 344
           P+ +   ++L  C       L+ L FGK I
Sbjct: 239 PNASTLSSVLLGCS-----NLSALGFGKQI 263



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 1/102 (0%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM- 67
           T   V +NA+ISGY  +    EA++LF +M+++GVE N +T + +L  C+  G    G+ 
Sbjct: 304 TRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQ 363

Query: 68  CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP 109
           C   +   +G++      +C++ +  + G ++        +P
Sbjct: 364 CFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMP 405


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 197/508 (38%), Positives = 289/508 (56%), Gaps = 14/508 (2%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
           +N ++SG   N    EA ++F  M     V  N+  M+  L    D G          + 
Sbjct: 111 WNTMVSGLSKNGASEEAAAMFRIMPVRNAVSWNA--MVAALACSGDMG------AAEDLF 162

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
                  D  +   +++ Y+  G+V    + F  +P + L++WNA+++GY +N  A   L
Sbjct: 163 RNAPEKTDAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDAL 222

Query: 134 ELYREMKSLGVC-PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
            +++ M    +  P+A T   VL  C++L A   G +V Q         N  +  +L++M
Sbjct: 223 RVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSM 282

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           Y +CG+L  A  +FD M  K +V+W A+I GY  HG G  A++LF++M   G+ PD    
Sbjct: 283 YCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITL 342

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           ++VL+AC H GL D G++ F  M+  Y ++P  +HY+CMVDLL RAG L  A+ +I SM 
Sbjct: 343 LAVLTACIHTGLCDFGIQCFETMQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNMIHSMP 402

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
            EP  + +G LL AC+++KN+E AE A  K+I+ +P N G YV L+NIY+ A     + R
Sbjct: 403 FEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANKWADVSR 462

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR  M++  + K PGYS++E+KG  H F   DR H Q   I+  LD+L+ L++       
Sbjct: 463 VRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLGLIHDKLDRLQMLMKAMGYVPD 522

Query: 433 SD--QKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
            D    + E+ L    +  HSEKLAIAFG+I+TSPG  + + KNLRICGDCH   KL+SK
Sbjct: 523 LDFALHDVEDSLKSQMLMRHSEKLAIAFGLISTSPGMTLRIFKNLRICGDCHNAAKLISK 582

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           I DR+ I+RD TRFHHF+ G CSC DYW
Sbjct: 583 IEDREIILRDTTRFHHFRGGHCSCGDYW 610



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 116/201 (57%), Gaps = 4/201 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           V +NA+++GYV NS   +A+ +F  M E   V+ N+ T+  +L  C +   L  G   H 
Sbjct: 203 VSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQ 262

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
            C+K  L  + +VG  L++MY KCG ++   K+FD++  K ++ WNAMISGYAQ+G    
Sbjct: 263 WCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQ 322

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN--NAL 189
            ++L+ +MK  GV PD +T + VL++C H G    G++  + +Q   +   P ++  + +
Sbjct: 323 AIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQ-EAYKIEPQIDHYSCM 381

Query: 190 INMYARCGNLKKARAIFDGMP 210
           +++  R G L++A  +   MP
Sbjct: 382 VDLLCRAGLLERAVNMIHSMP 402



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 120/249 (48%), Gaps = 16/249 (6%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L++ +  CG +D  R++F  +P K + +WN M+SG ++NG +     ++R M      
Sbjct: 81  NTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMP----V 136

Query: 146 PDAVTF---VGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202
            +AV++   V  L+    +GA       E   +     ++  L  A+++ Y   GN++KA
Sbjct: 137 RNAVSWNAMVAALACSGDMGA------AEDLFRNAPEKTDAILWTAMVSGYMDTGNVQKA 190

Query: 203 RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI-RPDGTAFVSVLSACSH 261
              F  MP + +VSW A++ GY  +   + A+++F  M++  I +P+ +   SVL  CS+
Sbjct: 191 MEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSN 250

Query: 262 AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWG 321
                 G +  +    K  L       T ++ +  + G LN+A ++ + M  + D   W 
Sbjct: 251 LSALGFGRQ-VHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTK-DIVAWN 308

Query: 322 ALLGACKIH 330
           A++     H
Sbjct: 309 AMISGYAQH 317



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 113/264 (42%), Gaps = 38/264 (14%)

Query: 93  VKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFV 152
           V+ G +    + F     K   T+N +++GYA+      + +  R   S+   PD V++ 
Sbjct: 23  VRRGDLAGAEEAFASTQLKTTTTYNCLLAGYAKASGLIRLADARRLFDSIPH-PDTVSYN 81

Query: 153 GVLS---SCAHL-GAHSVGLEVEQQIQANGFGSNPFLN----NALINMYARCGNLKKARA 204
            +LS   +C  + GA  V            F + P  +    N +++  ++ G  ++A A
Sbjct: 82  TLLSCHFACGDIDGARRV------------FSTMPVKDVTSWNTMVSGLSKNGASEEAAA 129

Query: 205 IFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL 264
           +F  MP +  VSW A++      G    A  LF    +   + D   + +++S     G 
Sbjct: 130 MFRIMPVRNAVSWNAMVAALACSGDMGAAEDLFRNAPE---KTDAILWTAMVSGYMDTGN 186

Query: 265 TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM----LVEPDGAVW 320
             K +E+F  M  +  +      +  +V    +  + ++AL + ++M    +V+P+ +  
Sbjct: 187 VQKAMEFFGAMPVRNLVS-----WNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTL 241

Query: 321 GALLGACKIHKNVELAELAFGKVI 344
            ++L  C       L+ L FG+ +
Sbjct: 242 SSVLLGCS-----NLSALGFGRQV 260



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 3/110 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE   ST   V +NA+ISGY  +    +A+ LF KM+++GV  + +T+L +L  C+  
Sbjct: 295 VFDE--MSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHT 352

Query: 61  GYLWLGM-CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP 109
           G    G+ C   +   + ++      +C++ +  + G ++    +   +P
Sbjct: 353 GLCDFGIQCFETMQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNMIHSMP 402


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 207/559 (37%), Positives = 318/559 (56%), Gaps = 51/559 (9%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFD+ +      V + ++   YV   +  + + LF +M   G+  NS+T+  +LP C D 
Sbjct: 134 VFDDMVVKD--VVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACAD- 190

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM- 119
            Y+ LG   H   ++  ++ +  V + L+ MY     +   R +FD +  + +++WN M 
Sbjct: 191 -YIKLGREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVML 249

Query: 120 ----------------------------------ISGYAQNGLATHVLELYREMKSLGVC 145
                                             ISG  QNG     L +  +M+  G+ 
Sbjct: 250 TAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIK 309

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P+ +T V  L  C +L +   G E+   +  + F  +  +  AL+ +YA+CG+L+ +R +
Sbjct: 310 PNRITIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHV 369

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           F+ MPRK VV+W  +I    +HG G  ++ LF++ML SG+ P+   F+ VLS CSH+ L 
Sbjct: 370 FNTMPRKDVVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLA 429

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           D+GL  F  M +++ + P  +HY+CMVD+L RAG+L EA + I  M +EP  A WGALLG
Sbjct: 430 DEGLLVFNSMSSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIEPTAAAWGALLG 489

Query: 326 ACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKD 385
           AC+++KNVEL  LA  ++ ++EP N G YVLLSNI   A+       +R MMR++ L K 
Sbjct: 490 ACRVYKNVELGTLAASQLFEIEPDNAGNYVLLSNILVTAKKWVEASEIRKMMRDKGLAKT 549

Query: 386 PGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS--------DQKN 437
           PG S+V++K +V+ F+ GD+++ Q   IYR LD+++  ++  DG + +        DQ+ 
Sbjct: 550 PGRSWVQVKNKVYSFVTGDKSNEQKDMIYRFLDEIDEKMR-LDGYQPNTDFVLQNVDQEQ 608

Query: 438 SEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVR 497
            EE L     HSE+LA+AFGI+N+S  T + V KNLRICGDCH  IKL++KIV  Q IVR
Sbjct: 609 REETLCS---HSERLAVAFGILNSSGKTTVRVFKNLRICGDCHNAIKLIAKIVGMQIIVR 665

Query: 498 DATRFHHFKSGFCSCKDYW 516
           D+ RFHHF+ G+C+C D+W
Sbjct: 666 DSLRFHHFRDGYCTCNDFW 684



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 182/410 (44%), Gaps = 39/410 (9%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +  LISG+  +    +A+ ++  +  + V  +   +L +   C   G L +    H   +
Sbjct: 45  WTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVAKACAASGDLVVAKKIHDDAI 104

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           +FG + D  +GN L+ M+ KC  V+  R +FD +  K +++W +M   Y   G+    + 
Sbjct: 105 QFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVSWTSMTYCYVNCGMCRQGIL 164

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+REM   G+  +++T   +L +CA      +G EV   I  N    N ++++AL+NMYA
Sbjct: 165 LFREMGLNGIRANSLTVSSILPACADY--IKLGREVHGFILRNEMEGNVYVSSALVNMYA 222

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
               LK+AR +FD M  + +VSW  ++  Y ++   E  + LF +M K GI+ +  ++ +
Sbjct: 223 SSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNA 282

Query: 255 VLSACSHAG-----------LTDKGLE--------YFYGMKNKYGLQPGPE-------HY 288
            +S C   G           + D G++           G  N   L+ G E       H+
Sbjct: 283 AISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPGCTNLESLRGGKEIHGYVFRHW 342

Query: 289 --------TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
                   T +V L  + G L  +  +  +M    D   W  ++ A  +H     + + F
Sbjct: 343 FIEDVTITTALVLLYAKCGDLELSRHVFNTM-PRKDVVAWNTMIMANSMHGKGGESLILF 401

Query: 341 GKVIK--LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGY 388
            K++   +EP +  +  +LS         +G++    M  E  +  D  +
Sbjct: 402 NKMLDSGVEPNSVTFIGVLSGCSHSQLADEGLLVFNSMSSEHSITPDADH 451



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 116/247 (46%), Gaps = 4/247 (1%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
           L+   +  G +     LFD++PE  L TW  +ISG+ Q+G     +++Y  + S  V PD
Sbjct: 17  LIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPD 76

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
               + V  +CA  G   V  ++       GF  +  L NALI+M+ +C  +  AR +FD
Sbjct: 77  KFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFD 136

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            M  K VVSWT++   Y   G     + LF EM  +GIR +     S+L AC  A     
Sbjct: 137 DMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPAC--ADYIKL 194

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
           G E  +G   +  ++      + +V++   +  L +A  + +SM    D   W  +L A 
Sbjct: 195 GRE-VHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMY-HRDIVSWNVMLTAY 252

Query: 328 KIHKNVE 334
            ++K  E
Sbjct: 253 FLNKEYE 259


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 200/512 (39%), Positives = 303/512 (59%), Gaps = 14/512 (2%)

Query: 1   VFDE-SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD 59
           +FDE  IK     V +NA+ISGY       +A+ LF +M +  V+ +  TM  ++  C  
Sbjct: 163 MFDEIPIKDV---VSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQ 219

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
            G + LG   H      G   +  + N L+ +Y KCG V+   +L + +  K +I+WN +
Sbjct: 220 SGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTL 279

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVG----LEVEQQIQ 175
           I GY    L    L L++EM   G  P+ VT + +L +CAHLGA  +G    + ++++++
Sbjct: 280 IGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLK 339

Query: 176 ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAV 234
                +   L  +LI+MYA+CG++  A  + D     +++ +W A+I G+ +HG    A 
Sbjct: 340 GVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAF 399

Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
            +F  M K+GI PD   FV +LSACSH+G+ D G   F  M+  Y + P  EHY CM+DL
Sbjct: 400 DIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDL 459

Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
           LG +G   EA E+I +M +EPDG +W +LL ACKIH N+EL E    K+IK+EP N G Y
Sbjct: 460 LGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPENPGSY 519

Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKD-PGYSYVELKGRVHLFMVGDRNHHQTVEI 413
           VLLSNIY+ A   + + ++R ++ ++ +KK  PG S +E+   VH F++GD+ H Q  EI
Sbjct: 520 VLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREI 579

Query: 414 YRMLDKLENLVQEHDGTKRSDQ--KNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVV 469
           Y ML+++E L++E      + +  +  EE   +  +  HSEKLAIAFG+I+T PGT++ +
Sbjct: 580 YGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTI 639

Query: 470 MKNLRICGDCHLFIKLVSKIVDRQFIVRDATR 501
           +KNLR+C +CH   KL+SKI  R+ I RD TR
Sbjct: 640 VKNLRVCRNCHEATKLISKIYKREIIARDRTR 671



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 115/382 (30%), Positives = 184/382 (48%), Gaps = 36/382 (9%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N +  G+ L+S    A+ L+  M   G+  N  T   LL  C        G   H  
Sbjct: 41  LIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAKSKTFKEGQQIHGH 100

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGS-------------------------------VDYG 101
            +K G DLD  V   L++MY + G                                ++  
Sbjct: 101 VLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALITGYASRGYIESA 160

Query: 102 RKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL 161
           +K+FD++P K +++WNAMISGYA+ G     LEL++EM    V PD  T   V+S+CA  
Sbjct: 161 QKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQS 220

Query: 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
           G+  +G +V   I  +GFGSN  + NALI++Y++CG ++ A  + +G+  K V+SW  +I
Sbjct: 221 GSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLI 280

Query: 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG-LEYFYGMKNKYG 280
           GGY      + A+ LF EML+SG  P+    +S+L AC+H G  D G   + Y  K   G
Sbjct: 281 GGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKG 340

Query: 281 --LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAEL 338
             +       T ++D+  + G ++ A ++ +S       + W A++    +H     A  
Sbjct: 341 VVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFD 400

Query: 339 AFGKVIK--LEPMNTGYYVLLS 358
            F ++ K  +EP +  +  LLS
Sbjct: 401 IFSRMRKNGIEPDDITFVGLLS 422



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 125/257 (48%), Gaps = 33/257 (12%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           Y   +F+ +PE   + WN M  G+A +      L+LY  M SLG+ P+  TF  +L SCA
Sbjct: 27  YAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCA 86

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD------------ 207
                  G ++   +   GF  + +++ +LI+MYA+ G L+ A+ +FD            
Sbjct: 87  KSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTA 146

Query: 208 -------------------GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
                               +P K VVSW A+I GY   G+ + A++LF EM+K+ ++PD
Sbjct: 147 LITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPD 206

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
            +   +V+SAC+ +G  + G +  +   N +G     +    ++DL  + G++  A EL+
Sbjct: 207 ESTMATVVSACAQSGSIELGRQ-VHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELL 265

Query: 309 ESMLVEPDGAVWGALLG 325
           E  L   D   W  L+G
Sbjct: 266 EG-LSNKDVISWNTLIG 281


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 188/510 (36%), Positives = 293/510 (57%), Gaps = 9/510 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + ALI+G+V     S  + +F +M  +G   N  T + +L  C     + LG   H  
Sbjct: 258 VSWTALITGFVAEGYGS-GLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQ 316

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            VK  LD +  VG  L+ MY K   ++    +F+++ ++ L  W  +++GYAQ+G     
Sbjct: 317 IVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKA 376

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           ++ + +M+  GV P+  T    LS C+ +     G ++       G   + F+ +AL++M
Sbjct: 377 VKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDM 436

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG ++ A  +FDG+  +  VSW  II GY  HG G  A++ F+ ML  G  PD   F
Sbjct: 437 YAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTF 496

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + VLSACSH GL ++G ++F  +   YG+ P  EHY CMVD+LGRAG+ +E    IE M 
Sbjct: 497 IGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMK 556

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
           +  +  +W  +LGACK+H N+E  E A  K+ +LEP     Y+LLSN+++     D +  
Sbjct: 557 LTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTN 616

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
           VR +M  R +KK+PG S+VE+ G+VH+F+  D +H +  EI+  L  L   +     T  
Sbjct: 617 VRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPN 676

Query: 433 SDQKNSEEHLNDTE------VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
           +D  +   +++D E       HSE+LA+AF +++TS    I + KNLRICGDCH F+K +
Sbjct: 677 TD--HVLHNVSDREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSI 734

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           S+I +++ +VRD   FHHFK+G CSC+++W
Sbjct: 735 SEITNQELVVRDINCFHHFKNGSCSCQNFW 764



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 160/309 (51%), Gaps = 3/309 (0%)

Query: 16  NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVK 75
           N L+SG+       +   +  ++  +G E N  T + +L  C   G L  G   H   +K
Sbjct: 160 NNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIK 219

Query: 76  FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLEL 135
            G++ D  + N L+ +Y KCGS +Y  K+F ++PE+ +++W A+I+G+   G  +  L +
Sbjct: 220 SGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSG-LRI 278

Query: 136 YREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR 195
           + +M + G  P+  TF+ +L SC+ L    +G +V  QI  N    N F+  AL++MYA+
Sbjct: 279 FNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAK 338

Query: 196 CGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSV 255
              L+ A  IF+ + ++ + +WT I+ GY   G GE AV+ F +M + G++P+     S 
Sbjct: 339 NRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASS 398

Query: 256 LSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEP 315
           LS CS     D G +  + M  K G        + +VD+  + G + +A E++   LV  
Sbjct: 399 LSGCSRIATLDSGRQ-LHSMAIKAGQSGDMFVASALVDMYAKCGCVEDA-EVVFDGLVSR 456

Query: 316 DGAVWGALL 324
           D   W  ++
Sbjct: 457 DTVSWNTII 465



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 144/298 (48%), Gaps = 3/298 (1%)

Query: 28  VSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNC 87
           + EAV LF  MR   + +N      L+      G    G   H    K+G + D  + N 
Sbjct: 71  LQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNA 130

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
            +TMY+K  SV+ G + F  +  + L + N ++SG+           +  ++   G  P+
Sbjct: 131 FVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPN 190

Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
             TF+ +L +CA  G  + G  +  Q+  +G   +  L N+L+N+YA+CG+   A  +F 
Sbjct: 191 MYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFG 250

Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
            +P + VVSWTA+I G+   G+G   +++F++ML  G  P+   F+S+L +CS     D 
Sbjct: 251 EIPERDVVSWTALITGFVAEGYGS-GLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDL 309

Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           G +  +    K  L       T +VD+  +   L +A E I + L++ D   W  ++ 
Sbjct: 310 GKQ-VHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDA-ETIFNRLIKRDLFAWTVIVA 365



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 118/251 (47%), Gaps = 2/251 (0%)

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           +K G+  D  + + L+ +YVKC S+   R++ +++P + +  WN  +S           +
Sbjct: 16  IKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAV 75

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
           +L+  M+   +  +   F  ++S+ A LG +  G  +   +   GF S+  ++NA + MY
Sbjct: 76  QLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMY 135

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
            +  +++     F  M  + + S   ++ G+      +   ++  ++L  G  P+   F+
Sbjct: 136 MKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFI 195

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
           S+L  C+  G  ++G +  +G   K G+ P    +  +V++  + G  N A ++    + 
Sbjct: 196 SILKTCASKGDLNEG-KAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVF-GEIP 253

Query: 314 EPDGAVWGALL 324
           E D   W AL+
Sbjct: 254 ERDVVSWTALI 264


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 174/435 (40%), Positives = 274/435 (62%), Gaps = 4/435 (0%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N ++  Y K G VD  R LFDQ+  + +IT+N+MI+GY  +G     L+L+ +M+  G+ 
Sbjct: 308 NAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMR 367

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
            D  T V +L++CA LGA   G  +   I+      + +L  AL++MY +CG + +A A+
Sbjct: 368 ADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAV 427

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           F  M  + V +WTA+I G   +G G+ A++ F +M + G +P    +++VL+ACSH+ L 
Sbjct: 428 FHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLL 487

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           D+G  +F  M++ + L P  EHY CM+DLL R+G L+EA+ L+++M ++P+  +WG++L 
Sbjct: 488 DEGRLHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGSILS 547

Query: 326 ACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKD 385
           AC++HKN++LA  A   ++KL P     YV L NIY ++R      RVRM+M ER +KK 
Sbjct: 548 ACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWADAKRVRMLMEERGVKKT 607

Query: 386 PGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD----KLENLVQEHDGTKRSDQKNSEEH 441
            GYS + + G+VH F+  D++H  T+EI  M++    +L+++      ++ +   + EE 
Sbjct: 608 AGYSSITVAGQVHKFVANDQSHPWTLEIMAMMEEIACRLKSVGYSPVTSRIAVDVDEEEK 667

Query: 442 LNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATR 501
                 HSEK+AIAFG+I+  P   I ++KNLR+C DCH  IKLVS++ +R+ IVRD +R
Sbjct: 668 EQALLAHSEKIAIAFGLISLPPSLPIHIVKNLRVCEDCHSAIKLVSQLWNREIIVRDRSR 727

Query: 502 FHHFKSGFCSCKDYW 516
           FHHF+ G CSC D+W
Sbjct: 728 FHHFRDGACSCNDFW 742



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 128/244 (52%), Gaps = 12/244 (4%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + +N++I+GY+ +  + +A+ LF +MR  G+  ++ T++ LL  C   G L  G   H  
Sbjct: 336 ITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHGRALHAS 395

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             +  ++ D  +G  L+ MY+KCG VD    +F ++ E+ + TW AMI+G A NG+    
Sbjct: 396 IEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDA 455

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGS----NPFLNN- 187
           LE + +MK  G  P +VT++ VL++C+H       L  E ++  N   S    +P + + 
Sbjct: 456 LESFCQMKRDGFQPTSVTYIAVLTACSH-----SSLLDEGRLHFNEMRSLHKLHPQVEHY 510

Query: 188 -ALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
             +I++ AR G L +A  +   MP +   V W +I+    +H + ++A    + +LK   
Sbjct: 511 GCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGSILSACRVHKNIDLARHAAEHLLKLAP 570

Query: 246 RPDG 249
             D 
Sbjct: 571 EEDA 574



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 121/236 (51%), Gaps = 9/236 (3%)

Query: 93  VKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFV 152
           V+ G +D  R+L  Q PE+ +++W ++I+GY++ G     +  +  M S GV PD V  +
Sbjct: 182 VRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVI 241

Query: 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPR- 211
           G LS+C+ L    +G  +   +          L  ALI+MYA+CG++ +A+A+FD + R 
Sbjct: 242 GALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRG 301

Query: 212 KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEY 271
           +    W AII GY   GH +VA  LFD+M   G R D   F S+++   H+G     L+ 
Sbjct: 302 QKPEPWNAIIDGYCKLGHVDVARSLFDQM---GAR-DVITFNSMITGYIHSGRLRDALQL 357

Query: 272 FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL---IESMLVEPDGAVWGALL 324
           F  M+ ++G++        ++      G L     L   IE  +VE D  +  ALL
Sbjct: 358 FMQMR-RHGMRADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALL 412



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 131/327 (40%), Gaps = 51/327 (15%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGL-ATHVLELYREMKSLGVCPDAVTFVGVLSSC 158
           Y   LFD++P      ++  +    Q    A H + L R M+S GV   A TF  V   C
Sbjct: 53  YVLSLFDRLPHSTTFLFDTALRACLQASAGADHPVLLLRRMRSGGVRTGAFTFHFVFRCC 112

Query: 159 AHLGAHSVGLEVEQQ---IQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK--- 212
           A       GL +      ++     + P + N LI+MYA  G    AR  FD +P K   
Sbjct: 113 AAGARARAGLCLMLHAACLRTMLPSAAPLVANPLIHMYASMGLTDDARRAFDEIPAKDAV 172

Query: 213 ----------------------------TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
                                        VVSWT++I GY   G    AV  F+ ML  G
Sbjct: 173 VWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDG 232

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
           + PD  A +  LSACS     D G      +  K  ++        ++D+  + G + +A
Sbjct: 233 VAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKR-IRMTDNLVVALIDMYAKCGDIAQA 291

Query: 305 LELIESMLVEPDGAVWGALL-GACKIHKNVELAELAFGK-----VIKLEPMNTGYYVLLS 358
             + +++        W A++ G CK+  +V++A   F +     VI    M TGY     
Sbjct: 292 QAVFDAVGRGQKPEPWNAIIDGYCKL-GHVDVARSLFDQMGARDVITFNSMITGY----- 345

Query: 359 NIYSEARNLDGIMRVRMMMRERRLKKD 385
            I+S    L   +++ M MR   ++ D
Sbjct: 346 -IHSG--RLRDALQLFMQMRRHGMRAD 369


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 205/555 (36%), Positives = 314/555 (56%), Gaps = 53/555 (9%)

Query: 15  YNALISGYVLNSLVSE--AVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +N +I G+  +       A++LF +M  ++ +E N  T   +L  C   G +  G   H 
Sbjct: 86  WNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKACAKTGKIQQGKQIHG 145

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCG----------------------------------- 96
           + +K+G   D  V + L+ MYV CG                                   
Sbjct: 146 LALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVMMIDRRKRDGEVVLWN 205

Query: 97  ----------SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKS-LGVC 145
                          R LFD++ ++ +++WN MISGY+QNG     +E++REMK    + 
Sbjct: 206 VMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIR 265

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
           P+ VT V VL + + LG+  +G  +    + +G   +  L +ALI+MY++CG ++KA  +
Sbjct: 266 PNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMV 325

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           F+ +PR+ V++W+A+I G+ IHG    A+  F +M ++G+RP   A++++L+ACSHAGL 
Sbjct: 326 FERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLV 385

Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
           ++G  YF  M +  GL+P  EHY CMVDLLGR G L+EA E I +M ++PD  +W ALLG
Sbjct: 386 EEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFILNMPIKPDDVIWKALLG 445

Query: 326 ACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKD 385
           AC++H+NVE+ +     ++ + P ++G YV LSN+Y+   N   +  +R+ M+E  ++KD
Sbjct: 446 ACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEMDIRKD 505

Query: 386 PGYSYVELKGRVHLFMVGDRNHHQTVEIYRML----DKLENLVQEHDGTKRSDQKNSEEH 441
           PG S++++ G +H F+V D +H +  EI  ML    DKL         T+       E+ 
Sbjct: 506 PGCSWIDIDGVLHEFLVEDDSHPRAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDK 565

Query: 442 LNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATR 501
            N    HSEK+A AFG+I+TSPG  I ++KNLRIC DCH  IKL+SK+  R+  VRD  R
Sbjct: 566 ENALHYHSEKMATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKR 625

Query: 502 FHHFKSGFCSCKDYW 516
           FHHF+ G CSC DYW
Sbjct: 626 FHHFQDGSCSCMDYW 640



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 134/255 (52%), Gaps = 4/255 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
            V +N +ISGY  N    +AV +F +M++ + +  N VT++ +LP     G L LG   H
Sbjct: 232 VVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLH 291

Query: 71  CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
                 G+ +D  +G+ L+ MY KCG ++    +F+++P + +ITW+AMI+G+A +G A 
Sbjct: 292 LYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAG 351

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLE-VEQQIQANGFGSNPFLNNAL 189
             ++ + +M+  GV P  V ++ +L++C+H G    G     Q +  +G          +
Sbjct: 352 DAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCM 411

Query: 190 INMYARCGNLKKARAIFDGMPRKT-VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           +++  R G L +A      MP K   V W A++G   +H + E+  ++ + +L   +  D
Sbjct: 412 VDLLGRLGLLDEAEEFILNMPIKPDDVIWKALLGACRMHRNVEMGKRVAN-ILMDMVPHD 470

Query: 249 GTAFVSVLSACSHAG 263
             A+V++ +  +  G
Sbjct: 471 SGAYVALSNMYASQG 485



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 139/312 (44%), Gaps = 53/312 (16%)

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQNG--LATHVLELYREMKSLG-VCPDAVTFVGV 154
           +DY  K+F+Q+P++   +WN +I G++++    A   + L+ EM S   + P+  TF  V
Sbjct: 68  LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSV 127

Query: 155 LSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC------------------ 196
           L +CA  G    G ++       GFG + F+ + L+ MY  C                  
Sbjct: 128 LKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIERE 187

Query: 197 ---------------------------GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGH 229
                                      G+ K AR +FD M +++VVSW  +I GY  +G 
Sbjct: 188 MVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGF 247

Query: 230 GEVAVQLFDEMLK-SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY 288
            + AV++F EM K   IRP+    VSVL A S  G  + G E+ +      G++      
Sbjct: 248 FKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELG-EWLHLYAEDSGIRIDDVLG 306

Query: 289 TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--L 346
           + ++D+  + G + +A+ + E +  E +   W A++    IH     A   F K+ +  +
Sbjct: 307 SALIDMYSKCGIIEKAIMVFERLPRE-NVITWSAMINGFAIHGQAGDAIDCFCKMRQAGV 365

Query: 347 EPMNTGYYVLLS 358
            P +  Y  LL+
Sbjct: 366 RPSDVAYINLLT 377



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 4/87 (4%)

Query: 198 NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGE--VAVQLFDEMLKSG-IRPDGTAFVS 254
           +L  A  IF+ MP++   SW  II G+      +  +A+ LF EM+    I P+   F S
Sbjct: 67  DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPS 126

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGL 281
           VL AC+  G   +G +  +G+  KYG 
Sbjct: 127 VLKACAKTGKIQQGKQ-IHGLALKYGF 152


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 187/516 (36%), Positives = 305/516 (59%), Gaps = 13/516 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICV---DPGYLWLGMCC 69
           V +NA+ + Y+ +    EA+ LF +M  +GV  +  T +  L  C          +G   
Sbjct: 287 VSWNAMAAAYLQHHRPREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRI 346

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP--EKGLITWNAMISGYAQNG 127
             +  + GL+ D +V N  + MY KCGS+   R +F+++    +  ITWN+M++ Y  +G
Sbjct: 347 QSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFERISPTRRDCITWNSMLAAYGHHG 406

Query: 128 LATHVLELYREMKSLG-VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
           L     EL++ M++   V P+ VTFV VL +     + + G E+  ++ +NGF S+  + 
Sbjct: 407 LGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQ 466

Query: 187 NALINMYARCGNLKKARAIFDGMP--RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
           NAL+NMYA+CG+L  A+AIFD     ++ V++WT+++ GY  +G  E A++LF  M + G
Sbjct: 467 NALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLVAGYAQYGQAERALKLFWTMQQQG 526

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
           +RP+   F+S L+AC+H G  ++G E   GM   +G+ P  +H++C+VDLLGR G+L+EA
Sbjct: 527 VRPNHITFISALTACNHGGKLEQGCELLSGMTPDHGIVPASKHFSCIVDLLGRCGRLDEA 586

Query: 305 LELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEA 364
            +L+E    + D   W ALL ACK  K +E  E    ++++L+P     Y++L+++Y+ A
Sbjct: 587 EKLLERT-SQADVITWMALLDACKNSKELERGERCAERIMQLDPEVASSYIVLASMYAAA 645

Query: 365 RNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLV 424
              +    +R  M ++ ++ DPG S VE+   +H F  GD++H ++ EIY  L++L   +
Sbjct: 646 GRWNEAATIRKTMLDKGIRADPGCSAVEVNQELHSFSAGDKSHPKSEEIYLELERLHWSI 705

Query: 425 QEHDGTKRSD---QKNSEEHLNDTEV-HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCH 480
           +       +       S+EH     + HSEKLAIAFG+++T  G+ + V+KNLR+C DCH
Sbjct: 706 KAAGYVADTGLVLHDVSQEHKERLLMRHSEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCH 765

Query: 481 LFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
              KL+SK+  R  ++RD++R+HHF SG CSC DYW
Sbjct: 766 TATKLISKVTGRDILMRDSSRYHHFTSGTCSCGDYW 801



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 153/325 (47%), Gaps = 11/325 (3%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEI-NSVTMLCLLPICVDPGYLWLG--MCC 69
           V +NA+IS ++ N    EA+ LF  M   G    NSVT + +L  CV+ G L L      
Sbjct: 77  VTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAI 136

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLF----DQVPEKGLITWNAMISGYAQ 125
           H   V  G++ +  V   L+  Y K GS+D   ++F    D+ P   L+T +AMIS   Q
Sbjct: 137 HGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPSTSLVTCSAMISACWQ 196

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHS-VGLEVEQQIQANGFGSNPF 184
           NG     L L+  M   G  P  VT V VL++C+ L   S     +EQ ++      +  
Sbjct: 197 NGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACSMLPVGSATAFVLEQAMEVVSATRDNV 256

Query: 185 LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
           L   L+  YAR  +L +ARA FD +    VVSW A+   Y  H     A+ LF+ ML  G
Sbjct: 257 LGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQHHRPREALVLFERMLLEG 316

Query: 245 IRPDGTAFVSVLSAC-SHAGLTDKGL-EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
           +RP    F++ L+AC ++   T   + +    +  + GL+         +++  + G L 
Sbjct: 317 VRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLA 376

Query: 303 EALELIESM-LVEPDGAVWGALLGA 326
           +A  + E +     D   W ++L A
Sbjct: 377 DARAVFERISPTRRDCITWNSMLAA 401



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 153/320 (47%), Gaps = 27/320 (8%)

Query: 43  VEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGR 102
           V  N   ++ L+  C   G L  G   H        + +  +GN L++MY KCGS+   +
Sbjct: 3   VRPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAK 62

Query: 103 KLFDQVP---EKGLITWNAMISGYAQNGLATHVLELYREMKSLGV-CPDAVTFVGVLSSC 158
           + FD++P   ++ ++TWNAMIS + +NG A   L+L+R+M   G   P++VTFV VL SC
Sbjct: 63  QAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSC 122

Query: 159 AHLGAHSVG--LEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF----DGMPRK 212
              G  S+     +  +I   G     F+  AL++ Y + G+L  A  +F    D  P  
Sbjct: 123 VEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPST 182

Query: 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS-------HAGLT 265
           ++V+ +A+I     +G  + +++LF  M   G +P G   VSVL+ACS        A + 
Sbjct: 183 SLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACSMLPVGSATAFVL 242

Query: 266 DKGLEYFYGMK-NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
           ++ +E     + N  G        T ++    R+  L+ A    ++ +  PD   W A+ 
Sbjct: 243 EQAMEVVSATRDNVLG--------TTLLTTYARSNDLSRARATFDA-IQSPDVVSWNAMA 293

Query: 325 GACKIHKNVELAELAFGKVI 344
            A   H     A + F +++
Sbjct: 294 AAYLQHHRPREALVLFERML 313



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 11/128 (8%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD+S  +    + + +L++GY        A+ LF  M++QGV  N +T +  L  C   
Sbjct: 485 IFDKSSSNQEDVIAWTSLVAGYAQYGQAERALKLFWTMQQQGVRPNHITFISALTACNHG 544

Query: 61  GYLWLGMCCHCICVKFGLDLDFSV------GNCLMTMYVKCGSVDYGRKLFDQVPEKGLI 114
           G L  G  C  +    G+  D  +       +C++ +  +CG +D   KL ++  +  +I
Sbjct: 545 GKLEQG--CELLS---GMTPDHGIVPASKHFSCIVDLLGRCGRLDEAEKLLERTSQADVI 599

Query: 115 TWNAMISG 122
           TW A++  
Sbjct: 600 TWMALLDA 607


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 195/510 (38%), Positives = 302/510 (59%), Gaps = 15/510 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N+LI GY     +  A+ +F +M E+    +S +   L+      G L         
Sbjct: 181 VSWNSLIDGYARCGEIELALEMFEEMPEK----DSFSWTILIDGLSKSGKLEAARD---- 232

Query: 73  CVKFGLDLDFSVG-NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
            V   + +  SV  N ++  Y+K G  +  ++LFDQ+PE+ L+TWN+MI+GY +N   T 
Sbjct: 233 -VFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTK 291

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L+L+  M    + P+  T +G +S+ + + +   G  V   I  +GF ++  L   LI 
Sbjct: 292 ALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIE 351

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY++CG++K A  +F  +P+K +  WT++I G G+HG  E  ++LFDEM ++G++P    
Sbjct: 352 MYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAIT 411

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F+ VL+ACSHAG  +    YF  M   YG++P  EHY C++D+L RAG L EA + IE M
Sbjct: 412 FIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERM 471

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
            ++ +  +W +LL   + H N+ + E A   +I L P  TG YV+LSN+Y+ A   + + 
Sbjct: 472 PIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPDTTGCYVILSNMYAAAGLWEKVR 531

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
           +VR MM+++ +KKDPG S +E +G +H F+VGD++H QT EIY  L +++  +       
Sbjct: 532 QVREMMKKKGMKKDPGCSSIEHQGSIHEFIVGDKSHPQTEEIYIKLCEMKKKLNVAGHIP 591

Query: 432 RSDQ-----KNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
            + Q     +   E   + E HSE+LAIAFG++N   G+ I ++KNLRIC DCH   KL+
Sbjct: 592 DTTQVLLCLEEDNEKEAELETHSERLAIAFGLLNIKHGSPIRIIKNLRICNDCHAVTKLL 651

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           S I +R+ I+RD +RFHHFKSG CSCKD+W
Sbjct: 652 SHIYNREIIIRDGSRFHHFKSGSCSCKDFW 681



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 168/327 (51%), Gaps = 21/327 (6%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +N LI  Y+ N   ++A++LF K+    V  +S T+ C+L  C   G L  G   H +
Sbjct: 81  VSWNLLIKCYIENQRSNDAIALFCKLLCDFVP-DSFTLPCVLKGCARLGALQEGKQIHGL 139

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K G  +D  V + L++MY KCG ++  RK+FD++ +K +++WN++I GYA+ G     
Sbjct: 140 VLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELA 199

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN----NA 188
           LE++ EM       D+ ++  ++   +  G     LE  + +    F   P  N    NA
Sbjct: 200 LEMFEEMPE----KDSFSWTILIDGLSKSGK----LEAARDV----FDRMPIRNSVSWNA 247

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           +IN Y + G+   A+ +FD MP +++V+W ++I GY  +     A++LF+ ML+  I P+
Sbjct: 248 MINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPN 307

Query: 249 GTAFVSVLSACSHAGLTDKGL-EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
            T  +  +SA S  G+   G   + +    K G +      T ++++  + G +  AL +
Sbjct: 308 YTTILGAVSAAS--GMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRV 365

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVE 334
             S+  +  G  W +++    +H  VE
Sbjct: 366 FRSIPKKKLGH-WTSVIVGLGMHGLVE 391



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 145/293 (49%), Gaps = 14/293 (4%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYV--KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
           H + +K       SV + L+ +Y   +  ++ Y   LFD + E  L++WN +I  Y +N 
Sbjct: 35  HALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLVSWNLLIKCYIENQ 94

Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
            +   + L+ ++    V PD+ T   VL  CA LGA   G ++   +   GFG + F+ +
Sbjct: 95  RSNDAIALFCKLLCDFV-PDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVDKFVLS 153

Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
           +L++MY++CG ++  R +FD M  K VVSW ++I GY   G  E+A+++F+EM +     
Sbjct: 154 SLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEK---- 209

Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
           D  ++  ++   S +G  +   + F  M  +  +      +  M++   +AG  N A EL
Sbjct: 210 DSFSWTILIDGLSKSGKLEAARDVFDRMPIRNSVS-----WNAMINGYMKAGDSNTAKEL 264

Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
            + M  E     W +++   + +K    A L   +V+  E ++  Y  +L  +
Sbjct: 265 FDQM-PERSLVTWNSMITGYERNKQFTKA-LKLFEVMLREDISPNYTTILGAV 315


>gi|302785459|ref|XP_002974501.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
 gi|300158099|gb|EFJ24723.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
          Length = 635

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 194/518 (37%), Positives = 290/518 (55%), Gaps = 24/518 (4%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +  +++ +  N    +A++L   M  +G+  NS+T + LL       +L  G   H    
Sbjct: 126 WTIMVAAFAHNGHYMDALNLLEIMDLEGISPNSITFIELLGAVAALSWLDRGRALHRRIA 185

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             G   D  V NCL+ MY KC S+     +F+ +  + +I W A+++ YA NG     L+
Sbjct: 186 CCGFLADIFVANCLINMYAKCRSLADACSVFESLTSRSVIAWTALVAAYALNGFFRDALK 245

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           ++  M   GV P  VTFV V+  CA +    +G EV   I A    +N  + NALINMY 
Sbjct: 246 VFLLMTLDGVEPTEVTFVTVVDVCADIAVFGIGREVHGVIDARS-EANVCVGNALINMYG 304

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS-----GIRPDG 249
           +C +  +AR +FD M RK +++W ++I  YG +G+G  A++++  M +S     GI  D 
Sbjct: 305 KCASPDEARKVFDAMQRKDIITWNSMIAVYGQNGYGFQALEIYKRMQESRMTILGITHDD 364

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
             F+ VL ACSHAGL     + +  M   YG +P      C++DLLGRAG L+EA E I 
Sbjct: 365 ITFIGVLFACSHAGLVKDSCKLYSSMIGDYGFKPTSLQCGCLIDLLGRAGWLDEAEEFIN 424

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDG 369
           SM   PD  +W  LLGAC  H +VE A  A  +++ L P ++G YV LSN+Y+ A   D 
Sbjct: 425 SMPYHPDHTIWTILLGACITHADVERAARAADRIMALRPTDSGSYVALSNLYALAERWDD 484

Query: 370 IMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE--- 426
           + R+R +M +R + K  G S +E+ G +H F+ GD +H +  EIY  L ++E +++E   
Sbjct: 485 MARMRKLMDQRGVFKMAGKSSIEIGGVLHEFIAGDTSHPRKREIYEELRRIEGVIRERGY 544

Query: 427 --------HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGD 478
                   H+  + + +K           HSE+LAIAFG+I++  GTE+ +MKNLR+C D
Sbjct: 545 VPDIKAVLHNAAREAKEKM-------CCFHSERLAIAFGMISSPGGTELRIMKNLRVCPD 597

Query: 479 CHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           CH   K++SK   R+ IVRDA RFH F++G CSC+DYW
Sbjct: 598 CHSATKIISKFSGRKIIVRDANRFHEFRNGSCSCEDYW 635



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 130/260 (50%), Gaps = 12/260 (4%)

Query: 4   ESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL 63
           ES+ S  + + + AL++ Y LN    +A+ +F  M   GVE   VT + ++ +C D    
Sbjct: 217 ESLTSRSV-IAWTALVAAYALNGFFRDALKVFLLMTLDGVEPTEVTFVTVVDVCADIAVF 275

Query: 64  WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGY 123
            +G   H + +    + +  VGN L+ MY KC S D  RK+FD +  K +ITWN+MI+ Y
Sbjct: 276 GIGREVHGV-IDARSEANVCVGNALINMYGKCASPDEARKVFDAMQRKDIITWNSMIAVY 334

Query: 124 AQNGLATHVLELYREMKS-----LGVCPDAVTFVGVLSSCAHLGAHSVGLEV-EQQIQAN 177
            QNG     LE+Y+ M+      LG+  D +TF+GVL +C+H G      ++    I   
Sbjct: 335 GQNGYGFQALEIYKRMQESRMTILGITHDDITFIGVLFACSHAGLVKDSCKLYSSMIGDY 394

Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQL 236
           GF         LI++  R G L +A    + MP       WT ++G    H   E A + 
Sbjct: 395 GFKPTSLQCGCLIDLLGRAGWLDEAEEFINSMPYHPDHTIWTILLGACITHADVERAARA 454

Query: 237 FDEMLKSGIRP-DGTAFVSV 255
            D ++   +RP D  ++V++
Sbjct: 455 ADRIM--ALRPTDSGSYVAL 472


>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Brachypodium distachyon]
          Length = 654

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 206/511 (40%), Positives = 293/511 (57%), Gaps = 37/511 (7%)

Query: 30  EAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCC-----HCICVKFGLDLDFSV 84
           EA++    M   GV ++S +    L  C+                H   ++ G  L   V
Sbjct: 157 EALARLADMGRLGVPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHV 216

Query: 85  GNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKS--L 142
              L+  Y K G V Y   +F  +PE+ +++W+AMI  YA+N      +EL+++M +   
Sbjct: 217 ATTLIDCYAKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDA 276

Query: 143 GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202
            + P+++T V VL++CA + A S G  +   I   GF S   + NAL+ MY RCG L+  
Sbjct: 277 DLVPNSITIVSVLNACAGVNALSHGKLLHAYILRRGFDSLVSVLNALMAMYMRCGCLEVG 336

Query: 203 RAIFDGM-PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261
           R IF  +  R+ VVSW ++I GYG+HG G  AVQ+F+EM+  G  P    F+SVL ACSH
Sbjct: 337 RHIFKWIGHRRDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGACSH 396

Query: 262 AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWG 321
           AGL ++G   F  M  +YG+ P  EHY CMVDLLGRAGQL+EA+ELI SM +EP   VWG
Sbjct: 397 AGLVNEGKMLFESMV-EYGVTPRAEHYACMVDLLGRAGQLDEAMELIRSMHIEPSPQVWG 455

Query: 322 ALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERR 381
           ALLGAC+IH +VE AE+A   +  LEP N G YVLL++IY+ A+  + +  ++ ++ E  
Sbjct: 456 ALLGACRIHGHVEYAEIACSHLFDLEPRNAGNYVLLADIYARAKLHNQVGVLKELLEEHA 515

Query: 382 LKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEH 441
           L+K  G S++E+K ++H F   D N +  VE      +L+ L+ E        Q  ++ +
Sbjct: 516 LEKVTGCSWIEVKKKLHSFTSVD-NKNPPVE------QLQALIGEFVA-----QMKNQGY 563

Query: 442 LNDTEV----------------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
           + DT +                HSEKLA+AFG+INT  G  I + KNLR+C DCH   K 
Sbjct: 564 VPDTGIVLYDIEGEEKERILIGHSEKLAVAFGLINTCSGEVIRITKNLRLCEDCHSVTKF 623

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +SK  +R+ +VRD  RFHHF+ G CSC DYW
Sbjct: 624 ISKFTEREIVVRDVNRFHHFRDGVCSCGDYW 654



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 10/163 (6%)

Query: 170 VEQQIQANG-FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
           V ++++A+  F S+PFL+  LI  YA  G L  AR +FD  P K +  W A++    +  
Sbjct: 94  VHRRLEADPVFRSDPFLSTRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALAD 153

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC-----SHAGLTDKGLE-YFYGMKNKYGLQ 282
           HG+ A+    +M + G+  D  ++   L AC     SHA  + +  E + + ++  Y L 
Sbjct: 154 HGDEALARLADMGRLGVPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALH 213

Query: 283 PGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
                 T ++D   + G +  A E + + + E +   W A++G
Sbjct: 214 --THVATTLIDCYAKLGIVRYA-ESVFAAMPERNVVSWSAMIG 253


>gi|413934702|gb|AFW69253.1| hypothetical protein ZEAMMB73_589560 [Zea mays]
          Length = 664

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 192/477 (40%), Positives = 278/477 (58%), Gaps = 37/477 (7%)

Query: 77  GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV---------------------------- 108
           G D    V N L++ YV CG V   RK+FD++                            
Sbjct: 188 GFDKHRFVENSLISAYVACGDVGAARKVFDEMLVKDVISWTSIVVAYSRIRDMGSAEEVF 247

Query: 109 ---PEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHS 165
              P K ++ W AM++GYAQN +    LE + +M   G+  D V+  G +S+CA LGA  
Sbjct: 248 ALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAVAGMPIDEVSLTGAISACAQLGAVK 307

Query: 166 VGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYG 225
               V++  + NG G N  + + L++MYA+CG + +AR +F+GM  K V +++++I G  
Sbjct: 308 RAAWVQEIAERNGLGRNVVVGSGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIVGLA 367

Query: 226 IHGHGEVAVQLFDEMLK-SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG 284
            HG     + LF++M++ + + P+   F+ VL+ACSHAG+  +G  YF  MK++YG+ P 
Sbjct: 368 SHGRANDVIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPS 427

Query: 285 PEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI 344
            +HY CMVDLL R+G + EAL+L++SM VEP G VWGALLGAC+IH N E+A++A   + 
Sbjct: 428 ADHYACMVDLLARSGLVTEALDLVKSMTVEPHGGVWGALLGACRIHGNTEVAKIAAEHLF 487

Query: 345 KLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELK-GRVHLFMVG 403
           +LEP   G YVLLSN  + A   D + ++R +MR R LKKDP  S+ E + G VH F  G
Sbjct: 488 RLEPEGIGNYVLLSNTLASAGEWDEVSKLRKLMRIRGLKKDPAVSWFEGRDGFVHQFFAG 547

Query: 404 DRNHHQTVEI-YRMLDKLENL-VQEHDGTKRSDQKNSEEHLNDTEV--HSEKLAIAFGII 459
           D  H    EI  R+L+  E L +  +     S   N  E   +  +  HSEKLA++FG++
Sbjct: 548 DNTHPSMHEIKKRLLELREKLNLAGYVPILSSVVYNVSEEEKERLLMGHSEKLALSFGLL 607

Query: 460 NTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
                + I ++KNLRIC DCHLFI+LVSK+   + +VRD  RFHHF+ G CSC  +W
Sbjct: 608 TLESRSSIRIVKNLRICEDCHLFIRLVSKVEPIEILVRDNMRFHHFRDGECSCGGFW 664



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 134/251 (53%), Gaps = 11/251 (4%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+++GY  N++  +A+  F +M   G+ I+ V++   +  C   G +        I
Sbjct: 256 VAWTAMVTGYAQNAMPVKALEAFEQMAVAGMPIDEVSLTGAISACAQLGAVKRAAWVQEI 315

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
             + GL  +  VG+ L+ MY KCG +D  RK+F+ + +K + T+++MI G A +G A  V
Sbjct: 316 AERNGLGRNVVVGSGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIVGLASHGRANDV 375

Query: 133 LELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--AL 189
           + L+ +M +   V P+ VTF+GVL++C+H G    G     Q++ + +G  P  ++   +
Sbjct: 376 IALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMK-DRYGILPSADHYACM 434

Query: 190 INMYARCGNLKKARAIFDGM---PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           +++ AR G + +A  +   M   P   V  W A++G   IHG+ EVA    + + +  + 
Sbjct: 435 VDLLARSGLVTEALDLVKSMTVEPHGGV--WGALLGACRIHGNTEVAKIAAEHLFR--LE 490

Query: 247 PDGTAFVSVLS 257
           P+G     +LS
Sbjct: 491 PEGIGNYVLLS 501


>gi|302773067|ref|XP_002969951.1| hypothetical protein SELMODRAFT_92231 [Selaginella moellendorffii]
 gi|300162462|gb|EFJ29075.1| hypothetical protein SELMODRAFT_92231 [Selaginella moellendorffii]
          Length = 789

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 212/521 (40%), Positives = 296/521 (56%), Gaps = 15/521 (2%)

Query: 7   KSTHLTVC-YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWL 65
           K     VC +N +I+ +  N  V EA+ L+G+M    +  + VT + +L  C  P  L  
Sbjct: 273 KVDQRDVCSWNTMIAAFAKNGHVFEALDLYGRM---TIRPDGVTFVNVLEACDCPDDLER 329

Query: 66  GMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQ 125
           G   H      G D D  V   L++MY +CG +D   ++F  +   G+IT NA+I+ +AQ
Sbjct: 330 GESIHRDARAHGYDSDLIVATALVSMYRRCGRLDRAAEVFAAIQHPGVITLNAIIAAHAQ 389

Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGS-NP- 183
            G A   L  +R+M  LG+ P   T V VL +CA  GA +       +  A   G  +P 
Sbjct: 390 FGRADGSLLHFRQMLQLGIRPSKFTLVAVLGACATSGAAASAGRDLHRWMAECPGDCDPH 449

Query: 184 --FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
              + NAL+NMYA+CG+L  AR IFD  P+  V +W AI+ GY  HG+ ++AV+L  EM 
Sbjct: 450 DILVRNALVNMYAKCGDLDAARGIFDAAPQGNVSTWNAIMAGYAQHGYADMAVRLLYEMQ 509

Query: 242 KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQL 301
            +GI PD  +F + LSA SHA   + G   FY +   YGL P  EHY  +VDLLGRAG L
Sbjct: 510 LAGISPDPISFTAALSASSHARQVEDGARIFYAISRDYGLIPSVEHYGAVVDLLGRAGWL 569

Query: 302 NEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY 361
            EA   + SM +  D A W ALLGAC+IHK+ + A  A   ++ ++P +   Y +LSN+Y
Sbjct: 570 EEAEGFLRSMAIAADAAAWMALLGACRIHKDQDRAMRAAEAIVAIDPSHGASYTVLSNVY 629

Query: 362 SEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLE 421
           S A   D    +R  M E   +K+PG S++E+K RVH F V DR+H +T EIY  LD+L 
Sbjct: 630 SAAGRWDEAEEIRRRMGENGARKEPGRSWIEVKNRVHEFAVKDRSHPRTGEIYERLDELR 689

Query: 422 NLVQEHD------GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRI 475
            +++  +      G+   D ++ E   N    HSEKLA+ FG+I T  G++I ++KNLRI
Sbjct: 690 VVLKSEEDYVPDVGSVLHDVED-EHRENLLWHHSEKLALGFGLIGTKEGSKITIIKNLRI 748

Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           C DCH+ +KL SK   R+ +VRD  RFHHF  G CSC D W
Sbjct: 749 CEDCHVVMKLTSKNTKREIVVRDCYRFHHFNGGACSCSDCW 789



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 151/302 (50%), Gaps = 9/302 (2%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +NA+I           ++  F +M + G   ++V  L L+     PG +  G     
Sbjct: 78  AVSWNAVIRANAQAGDFPRSLLFFQRMLQDGSVPDAVVFLSLIKA---PGTIQEGEIVQD 134

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              K G D  F VG  L+ MY +CG +D  +  FD++ E+G+++WNA+I+ Y++      
Sbjct: 135 FAKKSGFDRSFVVGTALIGMYGRCGRLDRAKDAFDRIQERGVVSWNALITVYSRGDEKEQ 194

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAH--SVGLEVEQQIQANGFGSNPFLNNAL 189
            L ++REM   G+ P+AVT + + S+ A + A   + G  +      +G  S   + N++
Sbjct: 195 SLRVFREMLLQGIAPNAVTIICIASAVAGIAAKITTCGNLIHACSIDSGLISVTTVANSI 254

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           IN++ R GN+ +A  IF+ + ++ V SW  +I  +  +GH   A+ L+  M    IRPDG
Sbjct: 255 INLFGRGGNISRANEIFEKVDQRDVCSWNTMIAAFAKNGHVFEALDLYGRMT---IRPDG 311

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
             FV+VL AC      ++G E  +     +G        T +V +  R G+L+ A E+  
Sbjct: 312 VTFVNVLEACDCPDDLERG-ESIHRDARAHGYDSDLIVATALVSMYRRCGRLDRAAEVFA 370

Query: 310 SM 311
           ++
Sbjct: 371 AI 372



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 125/286 (43%), Gaps = 35/286 (12%)

Query: 84  VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG 143
           + N L+ MY +  S      L D++P +  ++WNA+I   AQ G     L  ++ M   G
Sbjct: 49  LSNHLLHMYARLESSRDAELLLDRMPRRNAVSWNAVIRANAQAGDFPRSLLFFQRMLQDG 108

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
             PDAV F+ ++ +    G    G  V+   + +GF  +  +  ALI MY RCG L +A+
Sbjct: 109 SVPDAVVFLSLIKAP---GTIQEGEIVQDFAKKSGFDRSFVVGTALIGMYGRCGRLDRAK 165

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS--- 260
             FD +  + VVSW A+I  Y      E ++++F EML  GI P+    + + SA +   
Sbjct: 166 DAFDRIQERGVVSWNALITVYSRGDEKEQSLRVFREMLLQGIAPNAVTIICIASAVAGIA 225

Query: 261 ----------HAGLTDKGLEYFYGMKNK----YGL---------------QPGPEHYTCM 291
                     HA   D GL     + N     +G                Q     +  M
Sbjct: 226 AKITTCGNLIHACSIDSGLISVTTVANSIINLFGRGGNISRANEIFEKVDQRDVCSWNTM 285

Query: 292 VDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
           +    + G + EAL+L   M + PDG  +  +L AC    ++E  E
Sbjct: 286 IAAFAKNGHVFEALDLYGRMTIRPDGVTFVNVLEACDCPDDLERGE 331



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 80/159 (50%), Gaps = 7/159 (4%)

Query: 167 GLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGI 226
           G ++ +++  +G+G + FL+N L++MYAR  + + A  + D MPR+  VSW A+I     
Sbjct: 31  GRKIHRRVIESGYGDHLFLSNHLLHMYARLESSRDAELLLDRMPRRNAVSWNAVIRANAQ 90

Query: 227 HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPE 286
            G    ++  F  ML+ G  PD   F+S++ A    G   +G E       K G      
Sbjct: 91  AGDFPRSLLFFQRMLQDGSVPDAVVFLSLIKA---PGTIQEG-EIVQDFAKKSGFDRSFV 146

Query: 287 HYTCMVDLLGRAGQLNEALELIESMLVEPDGAV-WGALL 324
             T ++ + GR G+L+ A +  +   ++  G V W AL+
Sbjct: 147 VGTALIGMYGRCGRLDRAKDAFDR--IQERGVVSWNALI 183


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 187/450 (41%), Positives = 269/450 (59%), Gaps = 11/450 (2%)

Query: 76  FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLEL 135
           + LD D    N ++  YV  G +   +++FD++ E+ +++W  +I+GY Q G     L+L
Sbjct: 177 WSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDL 236

Query: 136 YREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR 195
           + EM   G  P+  T    L++CA+L A   G  +   I  +    N  L  +L++MYA+
Sbjct: 237 FHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAK 296

Query: 196 CGNLKKARAIFD---GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           CG +  A  +F    G+  K V  W A+IGGY +HG  + A+ LF++M    + P+   F
Sbjct: 297 CGEIDFAAKVFHDEYGLKLK-VWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTF 355

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           V++L+ACSH  L ++G  YF  M + YG++P  EHY CMVDLLGR+G L EA E + +M 
Sbjct: 356 VALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMP 415

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIK-LEPMNTGYYVLLSNIYSEARNLDGIM 371
           + PD  +WGALLGAC+IHK++E  +   GK+IK L+  + G +VLL+N+YS +   D   
Sbjct: 416 MAPDATIWGALLGACRIHKDIERGQ-RIGKIIKELDSDHIGCHVLLANLYSASGQWDEAK 474

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHD--- 428
            VR  +     KK PG S +EL G  H F+VGDR+H QT ++Y  LD++   ++      
Sbjct: 475 AVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVP 534

Query: 429 --GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
             G    D  + E+       HSEKLAIAFG+INT PGT I ++KNLR+C DCH   K +
Sbjct: 535 EFGEVLLDIDDEEDKETALSKHSEKLAIAFGLINTPPGTAIRIVKNLRVCADCHEATKFI 594

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SK+  R+ IVRD  R+HHFK GFCSCKDYW
Sbjct: 595 SKVYKREIIVRDRIRYHHFKDGFCSCKDYW 624



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 116/239 (48%), Gaps = 22/239 (9%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE   S    V +  +I+GYV      EA+ LF +M + G   N  T+   L  C + 
Sbjct: 205 MFDEM--SERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANL 262

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL----ITW 116
             L  G   H    K  + ++  +   L+ MY KCG +D+  K+F    E GL      W
Sbjct: 263 VALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHD--EYGLKLKVWPW 320

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ---- 172
           NAMI GYA +G +   ++L+ +MK   V P+ VTFV +L++C+H      G  VE+    
Sbjct: 321 NAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSH------GKLVEEGRGY 374

Query: 173 -QIQANGFGSNPFLNN--ALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIH 227
            +  A+ +G  P + +   ++++  R G LK+A      MP     + W A++G   IH
Sbjct: 375 FKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIH 433



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 144/339 (42%), Gaps = 78/339 (23%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKC--GSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
           H   +  GL L     N L+ + +    GS+ Y  +LFDQ+P+  +  +N MI  +A   
Sbjct: 35  HAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNTMIKAHAVIP 94

Query: 128 LATH-VLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN----GFGS 181
            ++H  + ++  M +  G  P+  TFV V  +C     + +G+   +QI+ +    G  S
Sbjct: 95  TSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKAC----GNGLGVLEGEQIRVHAIKIGLES 150

Query: 182 NPFLNNALINMYAR-------------------------------CGNLKKARAIFDGMP 210
           N F+ NA+I MYA                                 G + +A+ +FD M 
Sbjct: 151 NLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMS 210

Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL- 269
            + VVSWT II GY   G  + A+ LF EML++G  P+     S L+AC++    D+G  
Sbjct: 211 ERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRW 270

Query: 270 ----------------------------EYFYGMK---NKYGLQPGPEHYTCMVDLLGRA 298
                                       E  +  K   ++YGL+     +  M+      
Sbjct: 271 IHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMH 330

Query: 299 GQLNEALELIESMLVE---PDGAVWGALLGACKIHKNVE 334
           G+  EA++L E M VE   P+   + ALL AC   K VE
Sbjct: 331 GKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVE 369


>gi|357457743|ref|XP_003599152.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488200|gb|AES69403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 191/509 (37%), Positives = 287/509 (56%), Gaps = 5/509 (0%)

Query: 13   VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWL-GMCCHC 71
            V +NALI G+  +   +  +  F  MR +G+  N +T++ LL  C+ P YL   GM  H 
Sbjct: 617  VTWNALIGGHADDKDPNATIQAFNLMRREGLLSNYITIVNLLGTCMSPDYLLKHGMPIHA 676

Query: 72   ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
              V  G +LD  V + L+TMY +CG ++    +FD +  K   TWNA+ S  A  G    
Sbjct: 677  HIVVAGFELDTYVQSSLITMYAQCGDLNTSSYIFDVLANKNSSTWNAIFSANAHYGPGEE 736

Query: 132  VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
             L+    M++ GV  D  +F   L++  +L     G ++   I   GF  + ++ NA ++
Sbjct: 737  ALKFIARMRNDGVDLDQFSFSVALATIGNLTVLDEGQQLHSWIIKLGFELDEYVLNATMD 796

Query: 192  MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
            MY +CG +     I      ++  SW  +I     HG    A + F EML  G++PD   
Sbjct: 797  MYGKCGEIDDVFRILPIPKIRSKRSWNILISALARHGFFRQATEAFHEMLDLGLKPDHVT 856

Query: 252  FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            FVS+LSACSH GL D+GL YF  M +++G+    EH  C++DLLGR+G+L EA   I+ M
Sbjct: 857  FVSLLSACSHGGLVDEGLVYFSSMTSEFGVPTAIEHCVCIIDLLGRSGRLAEAEGFIDKM 916

Query: 312  LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
             V P+  VW +LL ACK+H N+EL   A  ++ +L   +   YVL SN+ +  +    + 
Sbjct: 917  PVPPNEFVWRSLLAACKVHGNLELGRKAADRLFELNSSDDSAYVLYSNVCASTQRWGDVE 976

Query: 372  RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH---- 427
             VR  M  + LKK P  S+++LK +V  F +GD+ H Q+ +IY  L++L  + +E     
Sbjct: 977  NVRKQMESQSLKKKPACSWIKLKNKVMTFGMGDQFHPQSAQIYAKLEELRKMTREEGHMP 1036

Query: 428  DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
            D +      + E+  ++   HSE++A+AFG+IN++ G+ + + KNLR+CGDCH   KLVS
Sbjct: 1037 DTSYALQDTDEEQKEHNLWNHSERIALAFGLINSAEGSPLRIFKNLRVCGDCHSVFKLVS 1096

Query: 488  KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            KIV R+ +VRD+ RFHHF  G CSC DYW
Sbjct: 1097 KIVGRKIVVRDSYRFHHFHGGKCSCSDYW 1125



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 145/315 (46%), Gaps = 4/315 (1%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           T+ +N++I+    N    E++  F  MR    + + +T+  LLP C    +L  G   H 
Sbjct: 417 TISWNSIITASAHNGRFEESLGHFFWMRRTHPKTDYITISALLPACGSAQHLKWGRGLHG 476

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
           +  K GL+ +  V N L++MY + GS +    +F  +P + LI+WN+M++ + ++G  +H
Sbjct: 477 LITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTMPARDLISWNSMMASHVEDGKYSH 536

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            + L  EM       + VTF   LS+C +L    +   V   +       N  + N L+ 
Sbjct: 537 AILLLVEMLKTRKAMNYVTFTTALSACYNLEKLKI---VHAFVIHFAVHHNLIIGNTLVT 593

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MY + G + +A+ +   MP + VV+W A+IGG+         +Q F+ M + G+  +   
Sbjct: 594 MYGKFGLMDEAQKVCKIMPERDVVTWNALIGGHADDKDPNATIQAFNLMRREGLLSNYIT 653

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
            V++L  C       K     +      G +      + ++ +  + G LN +   I  +
Sbjct: 654 IVNLLGTCMSPDYLLKHGMPIHAHIVVAGFELDTYVQSSLITMYAQCGDLNTS-SYIFDV 712

Query: 312 LVEPDGAVWGALLGA 326
           L   + + W A+  A
Sbjct: 713 LANKNSSTWNAIFSA 727



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 168/361 (46%), Gaps = 12/361 (3%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM-CCHCIC 73
           +N +ISG+V      +A+  F  M E GV  +S  +  ++  C   G +  G    H   
Sbjct: 216 WNNMISGFVRVGWYHKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMTEGARQIHGYV 275

Query: 74  VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
           VK GL  +  VG  L+  Y   GSV    KLF+++ E  +++W +++  YA NG    VL
Sbjct: 276 VKCGLMSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVL 335

Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF-LNNALINM 192
            +YR ++  G+     T   V+ +C   G  ++G ++   +  +G  ++   + N+LI+M
Sbjct: 336 NIYRHLRHNGLICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISM 395

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           +    ++++A  +F+ M  +  +SW +II     +G  E ++  F  M ++  + D    
Sbjct: 396 FGNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHPKTDYITI 455

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            ++L AC  A     G    +G+  K GL+        ++ +  +AG   +A EL+   +
Sbjct: 456 SALLPACGSAQHLKWG-RGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDA-ELVFHTM 513

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGY---YVLLSNIYSEARNLDG 369
              D   W +++ +     +VE  + +   ++ +E + T     YV  +   S   NL+ 
Sbjct: 514 PARDLISWNSMMAS-----HVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSACYNLEK 568

Query: 370 I 370
           +
Sbjct: 569 L 569



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 162/347 (46%), Gaps = 7/347 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + +L+  Y  N    E ++++  +R  G+     TM  ++  C   G   +G      
Sbjct: 316 VSWTSLMVCYADNGHTKEVLNIYRHLRHNGLICTGNTMATVIRTCGMFGDKTMGYQILGD 375

Query: 73  CVKFGLDLD-FSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
            +K GLD    SV N L++M+    SV+   ++F+ + E+  I+WN++I+  A NG    
Sbjct: 376 VIKSGLDTSSVSVANSLISMFGNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRFEE 435

Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
            L  +  M+      D +T   +L +C        G  +   I  +G  SN  + N+L++
Sbjct: 436 SLGHFFWMRRTHPKTDYITISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLS 495

Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
           MYA+ G+ + A  +F  MP + ++SW +++  +   G    A+ L  EMLK+    +   
Sbjct: 496 MYAQAGSSEDAELVFHTMPARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVT 555

Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
           F + LSAC +     + L+  +     + +         +V + G+ G ++EA ++ + +
Sbjct: 556 FTTALSACYNL----EKLKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCK-I 610

Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           + E D   W AL+G     K+      AF  +++ E + + Y  +++
Sbjct: 611 MPERDVVTWNALIGGHADDKDPNATIQAF-NLMRREGLLSNYITIVN 656



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 126/265 (47%), Gaps = 6/265 (2%)

Query: 65  LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYA 124
           +G   H +CVK  +  +    N L+ MY K GS+ Y + +FD++ ++   +WN MISG+ 
Sbjct: 165 VGKALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDASWNNMISGFV 224

Query: 125 QNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGL-EVEQQIQANGFGSNP 183
           + G     ++ +  M   GV P +     ++++C   G  + G  ++   +   G  SN 
Sbjct: 225 RVGWYHKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMTEGARQIHGYVVKCGLMSNV 284

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
           F+  +L++ Y   G++ +A  +F+ +    +VSWT+++  Y  +GH +  + ++  +  +
Sbjct: 285 FVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRHN 344

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEY-FYGMKNKYGLQPGPEHY-TCMVDLLGRAGQL 301
           G+   G    +V+  C   G  DK + Y   G   K GL          ++ + G    +
Sbjct: 345 GLICTGNTMATVIRTCGMFG--DKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSV 402

Query: 302 NEALELIESMLVEPDGAVWGALLGA 326
            EA  +  +M  E D   W +++ A
Sbjct: 403 EEASRVFNNMQ-ERDTISWNSIITA 426


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 195/523 (37%), Positives = 299/523 (57%), Gaps = 10/523 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +    T  +NA IS  V +    +A+  F +      E NS+T    L  CVD 
Sbjct: 165 MFDEMPQRNLAT--WNAYISNAVQDRRSLDAIVAFKEFLCVHGEPNSITFCAFLNACVDM 222

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV-PEKGLITWNAM 119
             L LG   H   V+ G   D SV N L+  Y KCG +     +F+++   K +++W +M
Sbjct: 223 VRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSM 282

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           ++   QN        ++ + +   V P       VLS+CA LG   +G  V         
Sbjct: 283 LAALVQNHEEERACMVFLQARK-EVEPTDFMISSVLSACAELGGLELGRSVHALAVKACV 341

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             N F+ +AL++MY +CG+++ A  +F  +P + +V+W A+IGGY   G  ++A++LF+E
Sbjct: 342 EDNIFVGSALVDMYGKCGSIENAEQVFSELPERNLVTWNAMIGGYAHQGDIDMALRLFEE 401

Query: 240 ML--KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
           M     GIRP     +S+LS CS  G  ++G++ F  M+  YG++PG EH+ C+VDLLGR
Sbjct: 402 MTLGSHGIRPSYVTLISILSVCSRVGAVERGIQIFESMRLNYGIEPGAEHFACVVDLLGR 461

Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
           +G ++ A E I++M ++P  +VWGALLGAC++H   EL ++A  K+ +L+ +++G +V+L
Sbjct: 462 SGLVDRAYEFIQNMAIQPTISVWGALLGACRMHGKTELGKIAAEKLFELDHVDSGNHVVL 521

Query: 358 SNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML 417
           SN+ + A   +    VR  M++  +KK+ GYS++ +K R+H+F   D +H +  EI  ML
Sbjct: 522 SNMLASAGRWEEATVVRKEMKDIGIKKNVGYSWIAVKNRIHVFQAKDSSHDRNSEIQAML 581

Query: 418 DKLENLVQEHDGTKRSDQK----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
            KL   ++E      ++        EE  ++   HSEK+A+AFG+I    G  I + KNL
Sbjct: 582 GKLRGGMKEAGYVPDTNLSLFDLEDEEKASEVWYHSEKIALAFGLIALPQGVPIRITKNL 641

Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           RICGDCH  IK +S+IV R+ IVRD  RFH FK G CSCKDYW
Sbjct: 642 RICGDCHSAIKFISRIVGREIIVRDNHRFHRFKDGCCSCKDYW 684



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 179/397 (45%), Gaps = 12/397 (3%)

Query: 9   THL--TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLG 66
           THL   V + +LISG V N     A+  F  MR   V+ N  T  C+            G
Sbjct: 68  THLRTVVTWTSLISGCVHNRRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAFVQIPMTG 127

Query: 67  MCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQN 126
              H + +K G+  D  VG     MY K G       +FD++P++ L TWNA IS   Q+
Sbjct: 128 KQIHGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQD 187

Query: 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
             +   +  ++E   +   P+++TF   L++C  +   ++G ++   I   G+  +  + 
Sbjct: 188 RRSLDAIVAFKEFLCVHGEPNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKEDVSVA 247

Query: 187 NALINMYARCGNLKKARAIFDGM-PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
           N LI+ Y +CG++  A  +F+ +  RK VVSW +++     +   E A  +F +  K  +
Sbjct: 248 NGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQARKE-V 306

Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
            P      SVLSAC+  G  + G    + +  K  ++      + +VD+ G+ G +  A 
Sbjct: 307 EPTDFMISSVLSACAELGGLELG-RSVHALAVKACVEDNIFVGSALVDMYGKCGSIENA- 364

Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR 365
           E + S L E +   W A++G      ++++A   F ++          YV L +I S   
Sbjct: 365 EQVFSELPERNLVTWNAMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILSVCS 424

Query: 366 NLDGIMRVRMMMRERRLKK--DPGYSY----VELKGR 396
            +  + R   +    RL    +PG  +    V+L GR
Sbjct: 425 RVGAVERGIQIFESMRLNYGIEPGAEHFACVVDLLGR 461



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/288 (21%), Positives = 117/288 (40%), Gaps = 6/288 (2%)

Query: 84  VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG 143
           + N L+ MY K   ++  + +      + ++TW ++ISG   N      L  +  M+   
Sbjct: 44  LSNHLVNMYSKLDLLNSAQHVLSLTHLRTVVTWTSLISGCVHNRRFLPALLHFTNMRRDN 103

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
           V P+  TF  V  + A +     G ++       G   + F+  +  +MY + G    A 
Sbjct: 104 VQPNDFTFPCVFKASAFVQIPMTGKQIHGLALKGGMIYDVFVGCSCFDMYCKTGFRGDAC 163

Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG 263
            +FD MP++ + +W A I           A+  F E L     P+   F + L+AC    
Sbjct: 164 NMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHGEPNSITFCAFLNACVDMV 223

Query: 264 LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGAL 323
             + G +  +    + G +        ++D  G+ G +  A  +   +    +   W ++
Sbjct: 224 RLNLGRQ-LHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSM 282

Query: 324 LGACKIHKNVELAELAFGKVIK-LEPMNTGYYVLLSNIYSEARNLDGI 370
           L A   +   E A + F +  K +EP +     ++S++ S    L G+
Sbjct: 283 LAALVQNHEEERACMVFLQARKEVEPTD----FMISSVLSACAELGGL 326



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 2/141 (1%)

Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
           FL+N L+NMY++   L  A+ +      +TVV+WT++I G   +     A+  F  M + 
Sbjct: 43  FLSNHLVNMYSKLDLLNSAQHVLSLTHLRTVVTWTSLISGCVHNRRFLPALLHFTNMRRD 102

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
            ++P+   F  V  A +   +   G +  +G+  K G+           D+  + G   +
Sbjct: 103 NVQPNDFTFPCVFKASAFVQIPMTG-KQIHGLALKGGMIYDVFVGCSCFDMYCKTGFRGD 161

Query: 304 ALELIESMLVEPDGAVWGALL 324
           A  + + M  + + A W A +
Sbjct: 162 ACNMFDEM-PQRNLATWNAYI 181


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 190/541 (35%), Positives = 304/541 (56%), Gaps = 36/541 (6%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
            V +  LISGY      +EAV  F  M   G+  + VT++ +L  C     L  G   H 
Sbjct: 202 VVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSACGQLKDLNFGCSLHM 261

Query: 72  ICVKFGLDLDFSVGNCLMTMYVKCGS--------------------------------VD 99
           +     + +   +   L+ MY KCG                                 VD
Sbjct: 262 LVGDKRMLMSDKLVVALIDMYAKCGDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVD 321

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
             R LFDQ+ +  +IT+N++I+GY   G     L L+ +M+  G+  D  T VG+L++ A
Sbjct: 322 IARSLFDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGADNFTMVGLLTASA 381

Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTA 219
            LGA   G  +   I+      + +L  AL++MY +CG +++A   F  M  + V +W+A
Sbjct: 382 SLGALPQGRALHACIEQRLVERDVYLGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWSA 441

Query: 220 IIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKY 279
           +IGG   +G G+ A++ F  M   G   +   +++VL+ACSH+ L D+G  YF  M+  +
Sbjct: 442 MIGGLAFNGMGKAALEHFFWMKCDGFHANSVTYIAVLTACSHSCLLDEGRLYFDEMRLLH 501

Query: 280 GLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELA 339
            ++P  EHY CM+DLLGR+G L+EA++L+++M ++P+  +W ++L AC++HKNV+LA+ A
Sbjct: 502 NIRPQIEHYGCMIDLLGRSGLLDEAMDLVQTMPMQPNAVIWASILSACRVHKNVDLAQNA 561

Query: 340 FGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHL 399
              ++KLEP     YV + NIY ++R  +   ++R +M +R +KK  GYS + + G+VH 
Sbjct: 562 AHHLLKLEPAEDAVYVQMYNIYIDSRQWEDASKIRRLMEKRGVKKTAGYSSIAVAGQVHK 621

Query: 400 FMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQ----KNSEEHLNDTEVHSEKLAIA 455
           F+VGDR+H Q  EI  M++++   ++    +  + Q     + EE       HSEKLAIA
Sbjct: 622 FIVGDRSHPQIAEIVVMMEEIGRRLKSAGYSPITSQITVDVDEEEKEQALLAHSEKLAIA 681

Query: 456 FGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDY 515
           FG+++ +P   + ++KNLR+C DCH  IKL+S++ +R+ IVRD +RFHHF+ G CSC D+
Sbjct: 682 FGLVSLAPNLPVHIIKNLRVCEDCHSAIKLISRLWNREIIVRDRSRFHHFRGGVCSCNDF 741

Query: 516 W 516
           W
Sbjct: 742 W 742



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/270 (32%), Positives = 137/270 (50%), Gaps = 15/270 (5%)

Query: 81  DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140
           D      +++   K G +D  R+L  + P + ++TW  +ISGY++ G A   ++ +  M 
Sbjct: 170 DVVAWTTVISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSML 229

Query: 141 SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
           S G+ PD VT +G+LS+C  L   + G  +   +       +  L  ALI+MYA+CG+  
Sbjct: 230 SDGIAPDEVTVIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLVVALIDMYAKCGDTG 289

Query: 201 KARAIFDGMPR-KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSAC 259
           +AR +FD + R +    W A+I GY   GH ++A  LFD+M       D   F S+++  
Sbjct: 290 RAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDH----DVITFNSLITGY 345

Query: 260 SHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA---GQLNEALEL---IESMLV 313
            H G   + L  F  M+ ++GL  G +++T MV LL  +   G L +   L   IE  LV
Sbjct: 346 IHGGRLREALLLFTKMR-RHGL--GADNFT-MVGLLTASASLGALPQGRALHACIEQRLV 401

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKV 343
           E D  +  ALL        VE A +AF ++
Sbjct: 402 ERDVYLGTALLDMYMKCGRVEEAMVAFKQM 431



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 121/253 (47%), Gaps = 22/253 (8%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FD+     H  + +N+LI+GY+    + EA+ LF KMR  G+  ++ TM+ LL      
Sbjct: 326 LFDQ--MEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGADNFTMVGLLTASASL 383

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L  G   H    +  ++ D  +G  L+ MY+KCG V+     F Q+  + + TW+AMI
Sbjct: 384 GALPQGRALHACIEQRLVERDVYLGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWSAMI 443

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGL----------EV 170
            G A NG+    LE +  MK  G   ++VT++ VL++C+H      G            +
Sbjct: 444 GGLAFNGMGKAALEHFFWMKCDGFHANSVTYIAVLTACSHSCLLDEGRLYFDEMRLLHNI 503

Query: 171 EQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGH 229
             QI+  G          +I++  R G L +A  +   MP +   V W +I+    +H +
Sbjct: 504 RPQIEHYG---------CMIDLLGRSGLLDEAMDLVQTMPMQPNAVIWASILSACRVHKN 554

Query: 230 GEVAVQLFDEMLK 242
            ++A      +LK
Sbjct: 555 VDLAQNAAHHLLK 567



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 120/296 (40%), Gaps = 47/296 (15%)

Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
           Y   LFD++P    +   A+ + +  +      + LYR M  + V PDA TF  +   CA
Sbjct: 55  YALSLFDRMPCSTFLFDTALRACFRASSGPDRPIILYRRMHGVDVPPDAFTFHFLFKCCA 114

Query: 160 HLGAHSVGLEVEQQIQANGF-----GSNPFLNNALINMYARCGNLKKARAIFD------- 207
             GAH +   + + + A  F      + P + + +I+MYA  G    AR  FD       
Sbjct: 115 RGGAHVL---LGRMLHAACFRTLLPSAVPLIASPIIHMYAELGLPGDARRAFDEASVKDV 171

Query: 208 ------------------------GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
                                     P + VV+WT +I GY   G    AV  F+ ML  
Sbjct: 172 VAWTTVISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSD 231

Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
           GI PD    + +LSAC      + G      + +K  L    +    ++D+  + G    
Sbjct: 232 GIAPDEVTVIGMLSACGQLKDLNFGCSLHMLVGDKRMLM-SDKLVVALIDMYAKCGDTGR 290

Query: 304 ALELIESMLVEPDGAVWGALL-GACKIHKNVELAELAFGK-----VIKLEPMNTGY 353
           A E+ +++        W A++ G CK+  +V++A   F +     VI    + TGY
Sbjct: 291 AREVFDALGRGRGPQPWNAMIDGYCKV-GHVDIARSLFDQMEDHDVITFNSLITGY 345


>gi|242081563|ref|XP_002445550.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
 gi|241941900|gb|EES15045.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
          Length = 595

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 208/524 (39%), Positives = 295/524 (56%), Gaps = 25/524 (4%)

Query: 10  HLTVCYNALISGYVLNSLV------SEAVSLFGKMREQGVEINSVTMLCLL-PICVDPGY 62
           HLT   ++L S +  NS++      S+A+    +MR  G   N+ T+  LL P C     
Sbjct: 80  HLTAA-SSLPSTFQCNSILRVLSDPSDALRFLRRMRALGRRGNAFTLAILLKPRCA---- 134

Query: 63  LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISG 122
           L      H   V  G   D  +   LM  Y   G  D  RKLF ++P +  + WN +IS 
Sbjct: 135 LAHARQLHANVVAEGHLRDALLATSLMACYANRGDGDGARKLFGEMPARDAVAWNVLISC 194

Query: 123 YAQNGLATHVLELYREMK--SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            A+N      L+L+ EM+    G  PD VT + +L +C  LGA   G +V    + +G+G
Sbjct: 195 CARNRRTKDALKLFEEMRGRDSGAEPDDVTCILLLQACTSLGALDFGEQVWAYAEEHGYG 254

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
           +   + N+LI MY+RCG + KA  +F G P+K+VV+W+A+I G   +G G+ A+  F+EM
Sbjct: 255 AKLKVRNSLIAMYSRCGCVDKAYRVFCGTPQKSVVTWSAMISGLAANGFGDDAISAFEEM 314

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
           ++S + PD   F  VLSACSH+GL D+G  +F  M+ +YGL+P   HY C+VDL+GRAG 
Sbjct: 315 IRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGL 374

Query: 301 LNEALELIES-MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
           L+EA EL+ + M V PD  +W  LLGAC+IH +V+L E     +I+L+    G YVLL N
Sbjct: 375 LDEAYELVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVISNLIELKAQQAGDYVLLLN 434

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
            Y+       +  VR +M+E+ ++  PG + VE  G V+ F+  D  H + VEIY   +K
Sbjct: 435 TYAAVGEWSKVSEVRKLMQEKGIQTTPGCTTVEHNGEVYEFIADDDAHPRKVEIY---EK 491

Query: 420 LENLVQEHDGTKRSDQKNSEEHLNDTE-------VHSEKLAIAFGIINTSPGTEIVVMKN 472
           L  + ++          +SE H  D+E        HSEKLAIAF ++ T     I + KN
Sbjct: 492 LNEINKQLRIAGYVPNVSSELHDLDSEGKESALTYHSEKLAIAFALLVTPQNRPIRLAKN 551

Query: 473 LRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           LR+C DCH F K+ S I +R  IVRD TRFHHF+ G CSC DYW
Sbjct: 552 LRVCVDCHNFTKVFSGIYNRLVIVRDRTRFHHFQGGKCSCNDYW 595


>gi|15242278|ref|NP_197038.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180838|sp|Q9LXE8.1|PP386_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g15340, mitochondrial; Flags: Precursor
 gi|7671503|emb|CAB89344.1| putative protein [Arabidopsis thaliana]
 gi|332004768|gb|AED92151.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 203/561 (36%), Positives = 302/561 (53%), Gaps = 47/561 (8%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE   S    V +  L+S +    L+  ++ LF +MR + VEI+ V+++CL  +C   
Sbjct: 65  LFDEIPLSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKL 124

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSV---------------------- 98
             L      H + VK G+     V N LM MY KCG V                      
Sbjct: 125 EDLGFAQQGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVL 184

Query: 99  ---------DYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK-SLGVCPDA 148
                    + GR++F ++PE+  + W  M++GY   G    VLEL  EM    G   + 
Sbjct: 185 DTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNF 244

Query: 149 VTFVGVLSSCAHLG-------AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKK 201
           VT   +LS+CA  G        H   L+ E  +       +  +  AL++MYA+CGN+  
Sbjct: 245 VTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDS 304

Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261
           +  +F  M ++ VV+W A+  G  +HG G + + +F +M++  ++PD   F +VLSACSH
Sbjct: 305 SMNVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIRE-VKPDDLTFTAVLSACSH 363

Query: 262 AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWG 321
           +G+ D+G   F+ ++  YGL+P  +HY CMVDLLGRAG + EA  L+  M V P+  V G
Sbjct: 364 SGIVDEGWRCFHSLRF-YGLEPKVDHYACMVDLLGRAGLIEEAEILMREMPVPPNEVVLG 422

Query: 322 ALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERR 381
           +LLG+C +H  VE+AE    ++I++ P NT Y +L+SN+Y      D    +R  +R+R 
Sbjct: 423 SLLGSCSVHGKVEIAERIKRELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRG 482

Query: 382 LKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL------ENLVQEHDGTKRSDQ 435
           ++K PG S + +   VH F  GDR+H +T EIY  L+++         V +  G     +
Sbjct: 483 IRKIPGLSSIYVNDSVHRFSSGDRSHPRTKEIYLKLNEVIERIRSAGYVPDVSGLVSHSE 542

Query: 436 KNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFI 495
            + EE       HSEKLA+ FG++ T P T ++V KNLRIC DCH  +K+VSK+ DR+ I
Sbjct: 543 GDLEEKEQALCCHSEKLAVCFGLLETKPSTPLLVFKNLRICRDCHSAMKIVSKVYDREII 602

Query: 496 VRDATRFHHFKSGFCSCKDYW 516
           +RD  RFH FK G CSC DYW
Sbjct: 603 IRDRNRFHQFKGGSCSCSDYW 623



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 147/349 (42%), Gaps = 44/349 (12%)

Query: 53  LLPICVDPGYLWLGMCCHCICVKFGLDLDFS--VGNCLMTMYVKCGSVDYGRKLFDQVP- 109
           LL  C    +L  G   H +    GL       + N L   Y   G +   +KLFD++P 
Sbjct: 12  LLRHCAHRSFLRPGKELHAVLTTSGLKKAPRSYLSNALFQFYASSGEMVTAQKLFDEIPL 71

Query: 110 -EKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGL 168
            EK  + W  ++S +++ GL  + ++L+ EM+   V  D V+ V +   CA L       
Sbjct: 72  SEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQ 131

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCG------------------------------- 197
           +        G  ++  + NAL++MY +CG                               
Sbjct: 132 QGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWE 191

Query: 198 NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML-KSGIRPDGTAFVSVL 256
            L++ R +F  MP +  V+WT ++ GY   G     ++L  EM+ + G   +     S+L
Sbjct: 192 GLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSML 251

Query: 257 SACSHAG-LTDKGLEYFYGMKNKYGLQPGPEHY-----TCMVDLLGRAGQLNEALELIES 310
           SAC+ +G L      + Y +K +  +     +      T +VD+  + G ++ ++ +   
Sbjct: 252 SACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFR- 310

Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK-LEPMNTGYYVLLS 358
           ++ + +   W AL     +H    +    F ++I+ ++P +  +  +LS
Sbjct: 311 LMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIREVKPDDLTFTAVLS 359


>gi|15231831|ref|NP_188050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546762|sp|Q9LUL5.2|PP229_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g14330
 gi|332641981|gb|AEE75502.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  361 bits (927), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 182/522 (34%), Positives = 309/522 (59%), Gaps = 6/522 (1%)

Query: 1   VFDESIKSTHLT-VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD 59
           +FD+   S+ LT   + A+  GY  N    +A+ ++  M    +E  + ++   L  CVD
Sbjct: 189 IFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVD 248

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              L +G   H   VK    +D  V N L+ +Y++ G  D  RK+FD + E+ ++TWN++
Sbjct: 249 LKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSERNVVTWNSL 308

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           IS  ++      +  L+R+M+   +     T   +L +C+ + A   G E+  QI  +  
Sbjct: 309 ISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACSRVAALLTGKEIHAQILKSKE 368

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             +  L N+L++MY +CG ++ +R +FD M  K + SW  ++  Y I+G+ E  + LF+ 
Sbjct: 369 KPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEW 428

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M++SG+ PDG  FV++LS CS  GLT+ GL  F  MK ++ + P  EHY C+VD+LGRAG
Sbjct: 429 MIESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMKTEFRVSPALEHYACLVDILGRAG 488

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
           ++ EA+++IE+M  +P  ++WG+LL +C++H NV + E+A  ++  LEP N G YV++SN
Sbjct: 489 KIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAKELFVLEPHNPGNYVMVSN 548

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY-RMLD 418
           IY++A+  D + ++R MM++R +KK+ G S+V++K ++ +F+ G     +  + Y ++  
Sbjct: 549 IYADAKMWDNVDKIREMMKQRGVKKEAGCSWVQVKDKIQIFVAGGGYEFRNSDEYKKVWT 608

Query: 419 KLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLR 474
           +L+  +++   +  +       + E   N    HSE+LA  + +I+T  G  I + KNLR
Sbjct: 609 ELQEAIEKSGYSPNTSVVLHDVDEETKANWVCGHSERLATTYSLIHTGEGVPIRITKNLR 668

Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +C DCH ++K+VS++  R  ++RD  RFHHF  G CSCKDYW
Sbjct: 669 VCADCHSWMKIVSQVTRRVIVLRDTKRFHHFVDGICSCKDYW 710



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 110/250 (44%), Gaps = 5/250 (2%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLIT---WNAMISGYAQNGLATHVLELYREMKSLGV 144
           L+T++  C  +D  RK+FD V +  L+T   W AM  GY++NG     L +Y +M    +
Sbjct: 173 LITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFI 232

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARA 204
            P   +    L +C  L    VG  +  QI       +  + N L+ +Y   G    AR 
Sbjct: 233 EPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARK 292

Query: 205 IFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL 264
           +FDGM  + VV+W ++I              LF +M +  I        ++L ACS    
Sbjct: 293 VFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACSRVAA 352

Query: 265 TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
              G E  +    K   +P       ++D+ G+ G++  +  + + ML + D A W  +L
Sbjct: 353 LLTGKE-IHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTK-DLASWNIML 410

Query: 325 GACKIHKNVE 334
               I+ N+E
Sbjct: 411 NCYAINGNIE 420



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 109/292 (37%), Gaps = 55/292 (18%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAM-ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGV 154
           GS       F Q+P +  +    + +S   +   A  ++E      S    P+A T   +
Sbjct: 80  GSQSINHAKFLQIPWRQFVFTKPLGLSKSTKLDEAVTLIENSSSSPSNLSTPEAYT--DL 137

Query: 155 LSSCAHLGAHSVGLEVEQQIQAN-GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
           L +C    +   G+++   I  N     NP L + LI +++ C  L  AR IFD +   +
Sbjct: 138 LHACISAKSLHHGIKICSLILNNPSLRHNPKLLSKLITLFSVCRRLDLARKIFDDVTDSS 197

Query: 214 VVS---WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS---------- 260
           +++   W A+  GY  +G    A+ ++ +ML S I P   +    L AC           
Sbjct: 198 LLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDLKDLRVGRG 257

Query: 261 -------------------------HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295
                                     +GL D   + F GM  +  +      +  ++ +L
Sbjct: 258 IHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSERNVVT-----WNSLISVL 312

Query: 296 GRAGQLNEALELIESMLVEPDGAVWGAL---LGACKIHKNVELAELAFGKVI 344
            +  +++E   L   M  E  G  W  L   L AC       +A L  GK I
Sbjct: 313 SKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACS-----RVAALLTGKEI 359


>gi|9279581|dbj|BAB01039.1| unnamed protein product [Arabidopsis thaliana]
          Length = 717

 Score =  361 bits (927), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 182/522 (34%), Positives = 309/522 (59%), Gaps = 6/522 (1%)

Query: 1   VFDESIKSTHLT-VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD 59
           +FD+   S+ LT   + A+  GY  N    +A+ ++  M    +E  + ++   L  CVD
Sbjct: 196 IFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVD 255

Query: 60  PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
              L +G   H   VK    +D  V N L+ +Y++ G  D  RK+FD + E+ ++TWN++
Sbjct: 256 LKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSERNVVTWNSL 315

Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
           IS  ++      +  L+R+M+   +     T   +L +C+ + A   G E+  QI  +  
Sbjct: 316 ISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACSRVAALLTGKEIHAQILKSKE 375

Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
             +  L N+L++MY +CG ++ +R +FD M  K + SW  ++  Y I+G+ E  + LF+ 
Sbjct: 376 KPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEW 435

Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
           M++SG+ PDG  FV++LS CS  GLT+ GL  F  MK ++ + P  EHY C+VD+LGRAG
Sbjct: 436 MIESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMKTEFRVSPALEHYACLVDILGRAG 495

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
           ++ EA+++IE+M  +P  ++WG+LL +C++H NV + E+A  ++  LEP N G YV++SN
Sbjct: 496 KIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAKELFVLEPHNPGNYVMVSN 555

Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY-RMLD 418
           IY++A+  D + ++R MM++R +KK+ G S+V++K ++ +F+ G     +  + Y ++  
Sbjct: 556 IYADAKMWDNVDKIREMMKQRGVKKEAGCSWVQVKDKIQIFVAGGGYEFRNSDEYKKVWT 615

Query: 419 KLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLR 474
           +L+  +++   +  +       + E   N    HSE+LA  + +I+T  G  I + KNLR
Sbjct: 616 ELQEAIEKSGYSPNTSVVLHDVDEETKANWVCGHSERLATTYSLIHTGEGVPIRITKNLR 675

Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +C DCH ++K+VS++  R  ++RD  RFHHF  G CSCKDYW
Sbjct: 676 VCADCHSWMKIVSQVTRRVIVLRDTKRFHHFVDGICSCKDYW 717



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 110/250 (44%), Gaps = 5/250 (2%)

Query: 88  LMTMYVKCGSVDYGRKLFDQVPEKGLIT---WNAMISGYAQNGLATHVLELYREMKSLGV 144
           L+T++  C  +D  RK+FD V +  L+T   W AM  GY++NG     L +Y +M    +
Sbjct: 180 LITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFI 239

Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARA 204
            P   +    L +C  L    VG  +  QI       +  + N L+ +Y   G    AR 
Sbjct: 240 EPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARK 299

Query: 205 IFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGL 264
           +FDGM  + VV+W ++I              LF +M +  I        ++L ACS    
Sbjct: 300 VFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACSRVAA 359

Query: 265 TDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
              G E  +    K   +P       ++D+ G+ G++  +  + + ML + D A W  +L
Sbjct: 360 LLTGKE-IHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTK-DLASWNIML 417

Query: 325 GACKIHKNVE 334
               I+ N+E
Sbjct: 418 NCYAINGNIE 427



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 109/292 (37%), Gaps = 55/292 (18%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAM-ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGV 154
           GS       F Q+P +  +    + +S   +   A  ++E      S    P+A T   +
Sbjct: 87  GSQSINHAKFLQIPWRQFVFTKPLGLSKSTKLDEAVTLIENSSSSPSNLSTPEAYT--DL 144

Query: 155 LSSCAHLGAHSVGLEVEQQIQAN-GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
           L +C    +   G+++   I  N     NP L + LI +++ C  L  AR IFD +   +
Sbjct: 145 LHACISAKSLHHGIKICSLILNNPSLRHNPKLLSKLITLFSVCRRLDLARKIFDDVTDSS 204

Query: 214 VVS---WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS---------- 260
           +++   W A+  GY  +G    A+ ++ +ML S I P   +    L AC           
Sbjct: 205 LLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDLKDLRVGRG 264

Query: 261 -------------------------HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295
                                     +GL D   + F GM  +  +      +  ++ +L
Sbjct: 265 IHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSERNVVT-----WNSLISVL 319

Query: 296 GRAGQLNEALELIESMLVEPDGAVWGAL---LGACKIHKNVELAELAFGKVI 344
            +  +++E   L   M  E  G  W  L   L AC       +A L  GK I
Sbjct: 320 SKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACS-----RVAALLTGKEI 366


>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
          Length = 625

 Score =  361 bits (927), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 200/508 (39%), Positives = 294/508 (57%), Gaps = 18/508 (3%)

Query: 20  SGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV---KF 76
           S  V + L +  ++  G+  + G   + V   CLL +     Y  LGM      V     
Sbjct: 125 SAAVCDRLAAAGLA-HGQALKHGALAHPVVTNCLLKL-----YCALGMLSDARRVFDTSG 178

Query: 77  GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY 136
              LD    N +++ Y KCG ++  R++F ++PE+GL++W+AMI    + G  +  L ++
Sbjct: 179 ATSLDAFSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSEALRMF 238

Query: 137 REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNP---FLNNALINMY 193
            +M   G  PDAV    VL +CAHLGA   G  V + ++A G G +P    L  AL++MY
Sbjct: 239 DQMMGNGFRPDAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMY 298

Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
            +CG + +A  +FDG+  + VV W A+IGG  ++GHG+ A++LF  ML  G  P+ + FV
Sbjct: 299 CKCGCMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFV 358

Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
            VL AC+H G  D+G E F  M + +G++P  EHY C+ DLLGRAG L EA  ++  M +
Sbjct: 359 VVLCACTHTGRVDEGKEIFRSMCD-HGIEPRREHYGCLADLLGRAGLLEEAEAVLLDMPM 417

Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
           EP  + WGAL+ +C +H NV + E    K+I+LEP + G YV+L N+Y+     +    +
Sbjct: 418 EPHASQWGALMSSCLMHNNVGVGERVGKKLIELEPDDGGRYVVLFNLYAVNGLWEDAKAL 477

Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS 433
           R MM ER  KK+ G S++E  G VH F  GD  H QT +IY +L+ +E  +Q     K +
Sbjct: 478 RKMMEERGAKKETGLSFIEWNGLVHEFRSGDTRHPQTRQIYALLEDMEQRLQLIGYVKDT 537

Query: 434 -----DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
                D  + E+  N    HSE+LA+AFGI+NT     I ++KNLR+C DCH++ KLVSK
Sbjct: 538 SQVLMDMDDEEDKGNTLSYHSERLALAFGILNTPRHMPIRIVKNLRVCRDCHVYAKLVSK 597

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +  R+ I+RD  RFH F+ G CSC D+W
Sbjct: 598 LYQREIIMRDRHRFHLFRGGVCSCNDFW 625


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  361 bits (927), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 199/522 (38%), Positives = 293/522 (56%), Gaps = 9/522 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VF+E  K+    V ++ +I+ +  N   +EAV LF +MRE  V  N  T+  +L  C   
Sbjct: 304 VFNEMPKND--VVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIG 361

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
               LG   H + VK G DLD  V N L+ +Y KC  +D   KLF ++  K  ++WN +I
Sbjct: 362 KCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVI 421

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            GY   G       ++RE     V    VTF   L +CA L +  +G++V          
Sbjct: 422 VGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNA 481

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
               ++N+LI+MYA+CG++K A+++F+ M    V SW A+I GY  HG G  A+++ D M
Sbjct: 482 KKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIM 541

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
                +P+G  F+ VLS CS+AGL D+G E F  M   +G++P  EHYTCMV LLGR+GQ
Sbjct: 542 KDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQ 601

Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
           L++A++LIE +  EP   +W A+L A     N E A  +  +++K+ P +   YVL+SN+
Sbjct: 602 LDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKINPKDEATYVLVSNM 661

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
           Y+ A+    +  +R  M+E  +KK+PG S++E +G VH F VG  +H     I  ML+ L
Sbjct: 662 YAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSVGLSDHPDMKLINGMLEWL 721

Query: 421 ENLVQEHDGTKRSDQK-----NSEEHLNDTEVHSEKLAIAFGIIN-TSPGTEIVVMKNLR 474
            N+     G            + EE      VHSE+LA+A+G++   S    I++MKNLR
Sbjct: 722 -NMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLR 780

Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           IC DCH  +K++S IV R  ++RD  RFHHF +G CSC D+W
Sbjct: 781 ICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGDHW 822



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 144/318 (45%), Gaps = 2/318 (0%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  ++S YV N    +++ L   MR  G   N+ T    L   +  G        H  
Sbjct: 213 VVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQ 272

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            +K    LD  VG  L+ +Y + G +    K+F+++P+  ++ W+ MI+ + QNG     
Sbjct: 273 ILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEA 332

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           ++L+  M+   V P+  T   +L+ CA      +G ++   +   GF  + +++NALI++
Sbjct: 333 VDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDV 392

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+C  +  A  +F  +  K  VSW  +I GY   G G  A  +F E L++ +      F
Sbjct: 393 YAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTF 452

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
            S L AC+     D G++  +G+  K            ++D+  + G +  A  +   M 
Sbjct: 453 SSALGACASLASMDLGVQ-VHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEME 511

Query: 313 VEPDGAVWGALLGACKIH 330
              D A W AL+     H
Sbjct: 512 T-IDVASWNALISGYSTH 528



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 141/311 (45%), Gaps = 7/311 (2%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +  +  V +  L  GY       + + L+ ++  +G E+N       L + V  
Sbjct: 106 LFDEMPERNN--VSFVTLAQGYA----CQDPIGLYSRLHREGHELNPHVFTSFLKLFVSL 159

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
               +    H   VK G D +  VG  L+  Y  CGSVD  R +F+ +  K ++ W  ++
Sbjct: 160 DKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIV 219

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
           S Y +NG     L+L   M+  G  P+  TF   L +   LGA      V  QI    + 
Sbjct: 220 SCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYV 279

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            +P +   L+ +Y + G++  A  +F+ MP+  VV W+ +I  +  +G    AV LF  M
Sbjct: 280 LDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRM 339

Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
            ++ + P+     S+L+ C+    +  G E  +G+  K G          ++D+  +  +
Sbjct: 340 REAFVVPNEFTLSSILNGCAIGKCSGLG-EQLHGLVVKVGFDLDIYVSNALIDVYAKCEK 398

Query: 301 LNEALELIESM 311
           ++ A++L   +
Sbjct: 399 MDTAVKLFAEL 409



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 147/339 (43%), Gaps = 40/339 (11%)

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           HC  +K G  LD    N L+  YVK G       LFD++PE+  +++  +  GYA     
Sbjct: 72  HCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYACQDPI 131

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
                L+RE   L    +   F   L     L    +   +   I   G+ SN F+  AL
Sbjct: 132 GLYSRLHREGHEL----NPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAAL 187

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           IN Y+ CG++  AR +F+G+  K +V W  I+  Y  +G+ E +++L   M  +G  P+ 
Sbjct: 188 INAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNN 247

Query: 250 TAFVSVLSACSHAGLTD--KG-----LEYFYGMKNKYGL-------QPG----------- 284
             F + L A    G  D  KG     L+  Y +  + G+       Q G           
Sbjct: 248 YTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNE 307

Query: 285 -PEH----YTCMVDLLGRAGQLNEALELIESM---LVEPDGAVWGALLGACKIHKNVELA 336
            P++    ++ M+    + G  NEA++L   M    V P+     ++L  C I K   L 
Sbjct: 308 MPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLG 367

Query: 337 ELAFGKVIKLEPMNTGYYV--LLSNIYSEARNLDGIMRV 373
           E   G V+K+   +   YV   L ++Y++   +D  +++
Sbjct: 368 EQLHGLVVKV-GFDLDIYVSNALIDVYAKCEKMDTAVKL 405


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 187/450 (41%), Positives = 269/450 (59%), Gaps = 11/450 (2%)

Query: 76  FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLEL 135
           + LD D    N ++  YV  G +   +++FD++ E+ +++W  +I+GY Q G     L+L
Sbjct: 92  WSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDL 151

Query: 136 YREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR 195
           + EM   G  P+  T    L++CA+L A   G  +   I  +    N  L  +L++MYA+
Sbjct: 152 FHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAK 211

Query: 196 CGNLKKARAIFD---GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           CG +  A  +F    G+  K V  W A+IGGY +HG  + A+ LF++M    + P+   F
Sbjct: 212 CGEIDFAAKVFHDEYGLKLK-VWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTF 270

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           V++L+ACSH  L ++G  YF  M + YG++P  EHY CMVDLLGR+G L EA E + +M 
Sbjct: 271 VALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMP 330

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIK-LEPMNTGYYVLLSNIYSEARNLDGIM 371
           + PD  +WGALLGAC+IHK++E  +   GK+IK L+  + G +VLL+N+YS +   D   
Sbjct: 331 MAPDATIWGALLGACRIHKDIERGQ-RIGKIIKELDSDHIGCHVLLANLYSASGQWDEAK 389

Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHD--- 428
            VR  +     KK PG S +EL G  H F+VGDR+H QT ++Y  LD++   ++      
Sbjct: 390 AVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVP 449

Query: 429 --GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
             G    D  + E+       HSEKLAIAFG+INT PGT I ++KNLR+C DCH   K +
Sbjct: 450 EFGEVLLDIDDEEDKETALSKHSEKLAIAFGLINTPPGTAIRIVKNLRVCADCHEATKFI 509

Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           SK+  R+ IVRD  R+HHFK GFCSCKDYW
Sbjct: 510 SKVYKREIIVRDRIRYHHFKDGFCSCKDYW 539



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 116/239 (48%), Gaps = 22/239 (9%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE   S    V +  +I+GYV      EA+ LF +M + G   N  T+   L  C + 
Sbjct: 120 MFDEM--SERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANL 177

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGL----ITW 116
             L  G   H    K  + ++  +   L+ MY KCG +D+  K+F    E GL      W
Sbjct: 178 VALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHD--EYGLKLKVWPW 235

Query: 117 NAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ---- 172
           NAMI GYA +G +   ++L+ +MK   V P+ VTFV +L++C+H      G  VE+    
Sbjct: 236 NAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSH------GKLVEEGRGY 289

Query: 173 -QIQANGFGSNPFLNN--ALINMYARCGNLKKARAIFDGMPRKTVVS-WTAIIGGYGIH 227
            +  A+ +G  P + +   ++++  R G LK+A      MP     + W A++G   IH
Sbjct: 290 FKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIH 348


>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
 gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
          Length = 869

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 203/509 (39%), Positives = 294/509 (57%), Gaps = 5/509 (0%)

Query: 9   THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
           T   + + A+ISGY  N    +A+ ++  M    V  + +T+   L  C   G L +G+ 
Sbjct: 359 TRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVK 418

Query: 69  CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
            H +    G      V N L+ MY K   +D   ++F  +PEK +++W++MI+G+  N  
Sbjct: 419 LHELAESKGFMSYVVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFCFNHR 478

Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
               L  +R M +  V P++VTF+  L++CA  GA   G E+   +   G     +L NA
Sbjct: 479 NFEALYYFRHMLA-DVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIAYEGYLPNA 537

Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
           LI++Y +CG    A A F     K VVSW  +I G+  HG+GE A+  F++M+K G  PD
Sbjct: 538 LIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGNGETALSFFNQMVKIGECPD 597

Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
              FV++L ACS  G+  +G E F+ M +KY + P  +HY CMVDLL R GQL EA   I
Sbjct: 598 EVTFVALLCACSRGGMVSEGWELFHSMTDKYSIVPNLKHYACMVDLLSRVGQLTEAYNFI 657

Query: 309 ESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
             M + PD AVWGALL  C+IH++VEL ELA   V++LEP + GY+VLL ++Y++A   D
Sbjct: 658 NEMPITPDAAVWGALLNGCRIHRHVELGELAAKYVLELEPNDAGYHVLLCDLYADAGIWD 717

Query: 369 GIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHD 428
            + RVR  MRE+ L  D G S+VE+KG VH F+  D +H Q  EI  +L+ +   ++   
Sbjct: 718 KLARVRKTMREKGLDHDSGCSWVEVKGVVHAFLTDDESHPQIREINTVLEGIYERMKA-S 776

Query: 429 GTKRSDQKNSEEHLNDTEV---HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
           G    +  + E+ +   ++   HSE+LA+AFG+INT+PGT I V KN   C  CH  +K+
Sbjct: 777 GCAPVESHSPEDKVLKDDIFCGHSERLAVAFGLINTTPGTSISVTKNQYTCQSCHRILKM 836

Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKD 514
           +S IV R  IVRD+ + HHFK G CSC D
Sbjct: 837 ISYIVRRDIIVRDSKQVHHFKDGSCSCGD 865



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/321 (29%), Positives = 161/321 (50%), Gaps = 3/321 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +N ++ GY    L+ EA+ L+ +M   GV  +  T  C+L  C       +G   H   +
Sbjct: 163 WNVMVGGYGKAGLLEEALDLYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVL 222

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
           +FG   +  V N LMTMY KCG V   RK+FD +     I+WNAMI+G+ +NG     LE
Sbjct: 223 RFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVMDCISWNAMIAGHFENGECNAGLE 282

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
           L+  M    V P+ +T   V  +   L   +   E+       GF ++    N+LI MYA
Sbjct: 283 LFLTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMHGLAVKRGFATDVAFCNSLIQMYA 342

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
             G + +AR +F  M  +  +SWTA+I GY  +G  + A++++  M  + + PD     S
Sbjct: 343 SLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIAS 402

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
            L+AC+  G  D G++  + +    G          ++++  ++ ++++A+E+ + M  E
Sbjct: 403 ALAACACLGSLDVGVK-LHELAESKGFMSYVVVTNALLEMYAKSKRIDKAIEVFKCM-PE 460

Query: 315 PDGAVWGALL-GACKIHKNVE 334
            D   W +++ G C  H+N E
Sbjct: 461 KDVVSWSSMIAGFCFNHRNFE 481



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 131/277 (47%), Gaps = 13/277 (4%)

Query: 51  LCLLPICVDPGYLWLGMCCHC--ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQV 108
           LC     V+PG   L  C H       FGL L    GN +++M V+ G   +  ++F ++
Sbjct: 103 LCEWRRAVEPG---LRACAHADDRHAWFGLRL----GNAMLSMLVRFGETWHAWRVFAKM 155

Query: 109 PEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGL 168
           PE+ + +WN M+ GY + GL    L+LY  M   GV PD  TF  VL SC  +    +G 
Sbjct: 156 PERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGR 215

Query: 169 EVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHG 228
           EV   +   GF     + NAL+ MYA+CG++  AR +FD M     +SW A+I G+  +G
Sbjct: 216 EVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVMDCISWNAMIAGHFENG 275

Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL-EYFYGMKNKYGLQPGPEH 287
                ++LF  ML+  ++P+     SV  A     L+D    +  +G+  K G       
Sbjct: 276 ECNAGLELFLTMLQDEVQPNLMTITSVTVASGL--LSDITFAKEMHGLAVKRGFATDVAF 333

Query: 288 YTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
              ++ +    G + +A  +   M    D   W A++
Sbjct: 334 CNSLIQMYASLGMMGQARTVFSRMDTR-DAMSWTAMI 369



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 165/337 (48%), Gaps = 9/337 (2%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL---WLGMCC 69
           + +NA+I+G+  N   +  + LF  M +  V+ N +T   +  + V  G L         
Sbjct: 262 ISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMT---ITSVTVASGLLSDITFAKEM 318

Query: 70  HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
           H + VK G   D +  N L+ MY   G +   R +F ++  +  ++W AMISGY +NG  
Sbjct: 319 HGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFP 378

Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
              LE+Y  M+   V PD +T    L++CA LG+  VG+++ +  ++ GF S   + NAL
Sbjct: 379 DKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMSYVVVTNAL 438

Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
           + MYA+   + KA  +F  MP K VVSW+++I G+  +     A+  F  ML + ++P+ 
Sbjct: 439 LEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHML-ADVKPNS 497

Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
             F++ L+AC+  G    G E  +    + G+         ++DL  + GQ   A     
Sbjct: 498 VTFIAALAACAATGALRSGKE-IHAHVLRCGIAYEGYLPNALIDLYVKCGQTGYAWAQFC 556

Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
           +   + D   W  ++     H N E A   F +++K+
Sbjct: 557 AHGAK-DVVSWNIMIAGFVAHGNGETALSFFNQMVKI 592


>gi|357117491|ref|XP_003560501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Brachypodium distachyon]
          Length = 652

 Score =  361 bits (926), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 200/478 (41%), Positives = 278/478 (58%), Gaps = 39/478 (8%)

Query: 77  GLDLDFSVGNCLMTMYVKCGSVDYGRKLFD------------------------------ 106
           G D    V N L+  Y+ CG V   RK+FD                              
Sbjct: 176 GFDKHRFVENSLIGAYIACGDVGAARKVFDEMVVKDVICWTSIVVAYSRSRDMGSAEEVF 235

Query: 107 -QVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHS 165
            Q P K ++ W AM++GYAQN +    LE++  M +LG+  D V+  G +S+CA LGA  
Sbjct: 236 GQCPVKDMVAWTAMVTGYAQNAMPMKALEVFDRMTALGIGIDEVSLTGAISACAQLGAVK 295

Query: 166 VGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYG 225
               V++  + NGFG N  + + L++MYA+CG + +A  +FDGM  K V ++++++ G  
Sbjct: 296 RAAWVQEIAEMNGFGMNVVVGSGLVDMYAKCGLIDEACKVFDGMQEKNVYTYSSMVVGLA 355

Query: 226 IHGHGEVAVQLFDEMLK-SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPG 284
            HG    A+ LF +M++ + + P+   F+ VL+ACSHAG+   G  YF  MK+KYG+ P 
Sbjct: 356 SHGRAREAIALFKDMVRRADVAPNHVTFIGVLTACSHAGMVTDGRYYFAQMKDKYGILPS 415

Query: 285 PEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI 344
            +HYTCMVDLLGRAG ++EAL+L+ SM VEP G VWGALLGAC+IH   E+A++A   + 
Sbjct: 416 ADHYTCMVDLLGRAGLVDEALDLVRSMTVEPHGGVWGALLGACRIHGKTEVAKVAAEHLF 475

Query: 345 KLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELK-GRVHLFMVG 403
           KLEP   G YVLLSN  + A   D + +VR +MR RRLKK P  S+ E + G VH F  G
Sbjct: 476 KLEPEGIGNYVLLSNTLAAAGKWDEVSKVRKVMRSRRLKKVPAVSWFEGRDGLVHQFFAG 535

Query: 404 DRNHHQTVEIYRMLDKLENLVQEHDG-----TKRSDQKNSEEHLNDTEVHSEKLAIAFGI 458
           D +H +T EI + L +L   ++ H G     +      ++EE       HSEKLA+ FG+
Sbjct: 536 DNSHPRTREIKKALLELVAKLK-HAGYVPILSSIVYDVSNEEKERLLMGHSEKLALLFGL 594

Query: 459 INTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           +       I ++KNLRIC DCHLFI+LVS+    + IVRD  RFHHFK G CSC  +W
Sbjct: 595 LTLGSRCTIRIVKNLRICDDCHLFIRLVSRFEPVEIIVRDNMRFHHFKDGECSCGGFW 652



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 132/251 (52%), Gaps = 11/251 (4%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V + A+++GY  N++  +A+ +F +M   G+ I+ V++   +  C   G +        I
Sbjct: 244 VAWTAMVTGYAQNAMPMKALEVFDRMTALGIGIDEVSLTGAISACAQLGAVKRAAWVQEI 303

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               G  ++  VG+ L+ MY KCG +D   K+FD + EK + T+++M+ G A +G A   
Sbjct: 304 AEMNGFGMNVVVGSGLVDMYAKCGLIDEACKVFDGMQEKNVYTYSSMVVGLASHGRAREA 363

Query: 133 LELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--AL 189
           + L+++M +   V P+ VTF+GVL++C+H G  + G     Q++ + +G  P  ++   +
Sbjct: 364 IALFKDMVRRADVAPNHVTFIGVLTACSHAGMVTDGRYYFAQMK-DKYGILPSADHYTCM 422

Query: 190 INMYARCGNLKKARAIFDGM---PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
           +++  R G + +A  +   M   P   V  W A++G   IHG  EVA    + + K  + 
Sbjct: 423 VDLLGRAGLVDEALDLVRSMTVEPHGGV--WGALLGACRIHGKTEVAKVAAEHLFK--LE 478

Query: 247 PDGTAFVSVLS 257
           P+G     +LS
Sbjct: 479 PEGIGNYVLLS 489



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 86/236 (36%), Gaps = 81/236 (34%)

Query: 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM------------ 209
            AH+V   V       GF  + F+ N+LI  Y  CG++  AR +FD M            
Sbjct: 166 AAHAVSFLV------GGFDKHRFVENSLIGAYIACGDVGAARKVFDEMVVKDVICWTSIV 219

Query: 210 -------------------PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
                              P K +V+WTA++ GY  +     A+++FD M   GI  D  
Sbjct: 220 VAYSRSRDMGSAEEVFGQCPVKDMVAWTAMVTGYAQNAMPMKALEVFDRMTALGIGIDEV 279

Query: 251 AFVSVLSACSH-----------------------------------AGLTDKGLEYFYGM 275
           +    +SAC+                                     GL D+  + F GM
Sbjct: 280 SLTGAISACAQLGAVKRAAWVQEIAEMNGFGMNVVVGSGLVDMYAKCGLIDEACKVFDGM 339

Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML----VEPDGAVWGALLGAC 327
           + K         Y+ MV  L   G+  EA+ L + M+    V P+   +  +L AC
Sbjct: 340 QEKNVYT-----YSSMVVGLASHGRAREAIALFKDMVRRADVAPNHVTFIGVLTAC 390


>gi|302820798|ref|XP_002992065.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
 gi|300140187|gb|EFJ06914.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
          Length = 771

 Score =  361 bits (926), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 187/442 (42%), Positives = 270/442 (61%), Gaps = 9/442 (2%)

Query: 84  VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG 143
           V   L+ +Y KCG VD  R++ D +P +  ++W AMI+ YAQNG A   + L++ M   G
Sbjct: 330 VAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEG 389

Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG-FGSNPFLNNALINMYARCGNLKKA 202
             P  +T + V+ SCA LG  S+G  +  +I+++  F  +  L NA+I MY +CGNL+ A
Sbjct: 390 AEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPLFSQSLMLLNAVITMYGKCGNLELA 449

Query: 203 RAIFDGMPRKT--VVSWTAIIGGYGIHGHGEVAVQLFDEM-LKSGIRPDGTAFVSVLSAC 259
           R +F+ +P +T  VV+WTA+I  Y  +G GE A++LF EM +  G  P+   F+SVLSAC
Sbjct: 450 REVFESVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMVIDGGTEPNRVTFLSVLSAC 509

Query: 260 SHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI-ESMLVEPDGA 318
           SH G  ++  E+F  M   +G+ P  +HY C+VDLLGRAG+L EA +L+      E D  
Sbjct: 510 SHLGQLEQAWEHFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVV 569

Query: 319 VWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMR 378
            W A L AC+++ ++E ++ A  +V +LEP N    VLLSN+Y+       + R+R  M+
Sbjct: 570 CWIAFLSACQMNGDLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGRRADVARIRNEMK 629

Query: 379 ERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH----DGTKRSD 434
              +KK  G S++E+  RVH FMV D +H + +EIY  L++L   ++E     D      
Sbjct: 630 SSGVKKFAGRSWIEINNRVHEFMVSDVSHPRKLEIYSELERLHREIKEAGYVPDTKMVLR 689

Query: 435 QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQF 494
             + E+       HSE+LA+A GII+T PGT + V+KNLR+C DCH   K +S+IV RQ 
Sbjct: 690 DVDEEKKAQLLGYHSERLAMALGIISTPPGTTLRVVKNLRVCSDCHAATKFISQIVGRQI 749

Query: 495 IVRDATRFHHFKSGFCSCKDYW 516
           IVRD +RFHHFK G CSC DYW
Sbjct: 750 IVRDTSRFHHFKDGVCSCGDYW 771



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 131/259 (50%), Gaps = 21/259 (8%)

Query: 12  TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
           +V + A+I+ Y  N   +EA++LF  M  +G E + +T++ ++  C   G L LG   H 
Sbjct: 359 SVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHA 418

Query: 72  ICVKFGL-DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP--EKGLITWNAMISGYAQNGL 128
                 L      + N ++TMY KCG+++  R++F+ VP   + ++TW AMI  YAQNG+
Sbjct: 419 RIRSSPLFSQSLMLLNAVITMYGKCGNLELAREVFESVPLRTRSVVTWTAMIRAYAQNGV 478

Query: 129 ATHVLELYREMK-SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ-----ANGFGSN 182
               +EL++EM    G  P+ VTF+ VLS+C+HLG      ++EQ  +        FG  
Sbjct: 479 GEEAIELFQEMVIDGGTEPNRVTFLSVLSACSHLG------QLEQAWEHFCSMGPDFGVP 532

Query: 183 PFLNN--ALINMYARCGNLKKARAIFDGMP--RKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
           P  ++   L+++  R G L +A  +          VV W A +    ++G  E + +   
Sbjct: 533 PAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNGDLERSQRAAK 592

Query: 239 EMLKSGIRPDGTAFVSVLS 257
            +  S + P+  A   +LS
Sbjct: 593 RV--SELEPENVAGRVLLS 609



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 142/347 (40%), Gaps = 44/347 (12%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           V +  L++GY  +  + EA +LF +M       ++VT   +L      G+L         
Sbjct: 137 VSWAILVAGYARHDRLEEASALFRRM----PLWDTVTCTSVLQGYAHNGHLAEAQELFDR 192

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
               G D D +  N ++  Y K   VD    LF Q+  +   +W+ ++  YAQNG     
Sbjct: 193 IGGAG-DRDATACNAMIAAYGKNARVDLAEGLFAQIKLRNAASWSLLLLTYAQNGH---- 247

Query: 133 LELYREMKSLGVCP--DAVTFVGVLSSCAHLGAHSVGLEVEQQIQA----------NGFG 180
           L+L +  KS    P  D++ F  + +  +  G      E+ + + A           G+ 
Sbjct: 248 LDLAK--KSFDRMPQRDSIAFTAMTAVLSDQGELRGAREMLRYLSAVDVIAWNALLEGYS 305

Query: 181 SNPFLNN--------------------ALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
               L+                      L+N+Y +CG +  AR + D MP +T VSWTA+
Sbjct: 306 RTGDLDEVRRLFSAMEHRTVATTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSWTAM 365

Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
           I  Y  +G+   A+ LF  M   G  P     +SV+ +C+  G    G      +++   
Sbjct: 366 IAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPL 425

Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAV-WGALLGA 326
                     ++ + G+ G L  A E+ ES+ +     V W A++ A
Sbjct: 426 FSQSLMLLNAVITMYGKCGNLELAREVFESVPLRTRSVVTWTAMIRA 472



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 126/314 (40%), Gaps = 35/314 (11%)

Query: 86  NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
           N L+ ++ KCG  D  R +F++V      +W+ +I  Y  +        L+  M      
Sbjct: 46  NLLIDLFGKCGDPDAARAVFNRVRLPNEYSWSCIIQAYVSSSRIHDARALFDSMPGF--- 102

Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
            DA T+  ++++ A +       E+   + +   G +      L+  YAR   L++A A+
Sbjct: 103 -DAFTWNIMIAAYARINRLDDARELFHGMIS---GRDVVSWAILVAGYARHDRLEEASAL 158

Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
           F  MP    V+ T+++ GY  +GH   A +LFD +  +G R D TA  ++++A       
Sbjct: 159 FRRMPLWDTVTCTSVLQGYAHNGHLAEAQELFDRIGGAGDR-DATACNAMIAAYGKNARV 217

Query: 266 D--KGLEYFYGMKN--------------------KYGLQPGPEH----YTCMVDLLGRAG 299
           D  +GL     ++N                    K      P+     +T M  +L   G
Sbjct: 218 DLAEGLFAQIKLRNAASWSLLLLTYAQNGHLDLAKKSFDRMPQRDSIAFTAMTAVLSDQG 277

Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
           +L  A E++   L   D   W ALL       +++     F  +       T     L N
Sbjct: 278 ELRGAREMLR-YLSAVDVIAWNALLEGYSRTGDLDEVRRLFSAMEHRTVATTVVAGTLVN 336

Query: 360 IYSEARNLDGIMRV 373
           +Y +   +D   RV
Sbjct: 337 LYGKCGRVDDARRV 350



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 93/230 (40%), Gaps = 40/230 (17%)

Query: 170 VEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGH 229
           +  +I  +  G N  L N LI+++ +CG+   ARA+F+ +      SW+ II  Y     
Sbjct: 29  LHDEIARSPHGDNRRLTNLLIDLFGKCGDPDAARAVFNRVRLPNEYSWSCIIQAYVSSSR 88

Query: 230 GEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT--DKGLEYFYGMKNK--------- 278
              A  LFD M      P   AF   +   ++A +   D   E F+GM +          
Sbjct: 89  IHDARALFDSM------PGFDAFTWNIMIAAYARINRLDDARELFHGMISGRDVVSWAIL 142

Query: 279 ----------------YGLQPGPEHYTCMVDLLGRA--GQLNEALELIESM--LVEPDGA 318
                           +   P  +  TC   L G A  G L EA EL + +    + D  
Sbjct: 143 VAGYARHDRLEEASALFRRMPLWDTVTCTSVLQGYAHNGHLAEAQELFDRIGGAGDRDAT 202

Query: 319 VWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLD 368
              A++ A   +  V+LAE  F + IKL   N   + LL   Y++  +LD
Sbjct: 203 ACNAMIAAYGKNARVDLAEGLFAQ-IKLR--NAASWSLLLLTYAQNGHLD 249



 Score = 42.7 bits (99), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 8/133 (6%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMR-EQGVEINSVTMLCLLPICVD 59
           VF+     T   V + A+I  Y  N +  EA+ LF +M  + G E N VT L +L  C  
Sbjct: 452 VFESVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMVIDGGTEPNRVTFLSVLSACSH 511

Query: 60  PGYL---WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLF--DQVPEKGLI 114
            G L   W   C   +   FG+        CL+ +  + G +    KL    +  E  ++
Sbjct: 512 LGQLEQAWEHFC--SMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVV 569

Query: 115 TWNAMISGYAQNG 127
            W A +S    NG
Sbjct: 570 CWIAFLSACQMNG 582


>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
          Length = 615

 Score =  360 bits (925), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 207/537 (38%), Positives = 300/537 (55%), Gaps = 24/537 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLN-SLVSEAVSLFGKMREQG-VEINSVTMLCLLPICV 58
           VFD SI++ H +  +N LI     + S   EA  L+ KM E+G    +  T   +L  C 
Sbjct: 82  VFD-SIEN-HSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACA 139

Query: 59  DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
                  G   HC  VK G   D  V N L+ +Y  CG +D  RK+FD++PE+ L++WN+
Sbjct: 140 YIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNS 199

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN- 177
           MI    + G     L+L+REM+     PD  T   VLS+CA LG+ S+G      +    
Sbjct: 200 MIDALVRFGEYDSALQLFREMQR-SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKC 258

Query: 178 --GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQ 235
                 +  + N+LI MY +CG+L+ A  +F GM ++ + SW A+I G+  HG  E A+ 
Sbjct: 259 DVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMN 318

Query: 236 LFDEML--KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293
            FD M+  +  +RP+   FV +L AC+H G  +KG +YF  M   Y ++P  EHY C+VD
Sbjct: 319 FFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVD 378

Query: 294 LLGRAGQLNEALELIESMLVEPDGAVWGALLGAC-KIHKNVELAELAFGKVIKLEPMN-- 350
           L+ RAG + EA++++ SM ++PD  +W +LL AC K   +VEL+E     +I  +  N  
Sbjct: 379 LIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNES 438

Query: 351 -----TGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDR 405
                +G YVLLS +Y+ A   + +  VR +M E  ++K+PG S +E+ G  H F  GD 
Sbjct: 439 SNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDT 498

Query: 406 NHHQTVEIYRML----DKLENLVQEHDGTKRS--DQKNSEEHLNDTEVHSEKLAIAFGII 459
           +H QT +IY+ L    D+L ++    D ++    D  N         +HSE+LAIAFG+I
Sbjct: 499 SHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLI 558

Query: 460 NTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           N  P T I + KNLR+C DCH   KL+SK+ + + IVRD  RFHHFK G CSC DYW
Sbjct: 559 NLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 615



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 122/251 (48%), Gaps = 6/251 (2%)

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQN-GLATHVLELYREMKSLG-VCPDAVTFVGVL 155
           V+Y  ++FD +       WN +I   A +         LYR+M   G   PD  TF  VL
Sbjct: 76  VNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVL 135

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
            +CA++   S G +V  QI  +GFG + ++NN LI++Y  CG L  AR +FD MP +++V
Sbjct: 136 KACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLV 195

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL--EYFY 273
           SW ++I      G  + A+QLF EM +S   PDG    SVLSAC+  G    G     F 
Sbjct: 196 SWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFL 254

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNV 333
             K    +         ++++  + G L  A ++ + M  + D A W A++     H   
Sbjct: 255 LRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQ-KRDLASWNAMILGFATHGRA 313

Query: 334 ELAELAFGKVI 344
           E A   F +++
Sbjct: 314 EEAMNFFDRMV 324


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  360 bits (925), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 198/508 (38%), Positives = 296/508 (58%), Gaps = 8/508 (1%)

Query: 15  YNALISGYVLNSLVS-EAVSLFGKMREQGV-EINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           YN++I G +   + S E + LF  M  +G    N+ TM  +L  C     L  G   H  
Sbjct: 58  YNSVIRGCLYTKIPSKEPIHLFKDMVGKGYPNPNTFTMAFVLKACSIIMALEEGKQIHAQ 117

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            ++ G      V + L+  Y KC  +   RK+FD++ E+ L+ W+AM+SGYA+ G+    
Sbjct: 118 ILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEA 177

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
           L ++REM+ +G+ PD V+ VGVLS+CA +GA  +G  V   I+      +  LN ALINM
Sbjct: 178 LIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINM 237

Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
           YA+CG ++KAR IFD M  K   +W+++I G  IHG  E A+ +F  M ++  +P+   F
Sbjct: 238 YAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTF 297

Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
           + +LSAC+H GL   G  Y+  M  + G++P  EHY CMVDLL R G ++EA +    ++
Sbjct: 298 IGILSACAHGGLVSDGKRYWSSML-ELGIEPSMEHYGCMVDLLCRGGLIDEAYDF-ALII 355

Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
             PD  +W  LL A   ++ ++ AE+  GK+++LEP     Y++L+N+Y+    L+ +  
Sbjct: 356 PTPDPVIWRTLLVAYTKNRMLQKAEMVAGKLLELEPWKAENYIILANLYASVSQLEKVSH 415

Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD--KLENLVQEHDG- 429
           VR MM+E  +K  PG + +E+ G VH F+ GD +H +  EI + L    L+ L+  +   
Sbjct: 416 VRKMMKENGIKALPGCTSIEVDGFVHNFVTGDWSHPEAEEIKKTLRDVALKILISGYKPF 475

Query: 430 -TKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
            +      N EE  N    HSE+LAIA+G++ T     I ++KNLR+CGDCH   K++SK
Sbjct: 476 VSVVLHLVNDEEKENVLYEHSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISK 535

Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           I DR+ IVRD  RFH F +G CSCKDYW
Sbjct: 536 IYDREIIVRDRVRFHKFVNGTCSCKDYW 563



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 133/250 (53%), Gaps = 4/250 (1%)

Query: 96  GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT-HVLELYREMKSLGVC-PDAVTFVG 153
           G+ DY RK+F Q+P  G+  +N++I G     + +   + L+++M   G   P+  T   
Sbjct: 38  GNFDYARKIFSQIPNPGIFAYNSVIRGCLYTKIPSKEPIHLFKDMVGKGYPNPNTFTMAF 97

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
           VL +C+ + A   G ++  QI  +GF S+P++ ++L+N Y++C  +  AR +FD +  + 
Sbjct: 98  VLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERN 157

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
           +V W+A++ GY   G    A+ +F EM   GI PD  + V VLSAC+  G  D G ++ +
Sbjct: 158 LVCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIG-KWVH 216

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNV 333
               K  +    E  T ++++  + G + +A E+ + M V+ D   W +++    IH   
Sbjct: 217 AYIKKRMIHVDLELNTALINMYAKCGCIEKAREIFDEMRVK-DSKAWSSMIVGLAIHGLA 275

Query: 334 ELAELAFGKV 343
           E A   F ++
Sbjct: 276 EDALNVFSRM 285



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 118/224 (52%), Gaps = 2/224 (0%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           VFDE I   +L VC++A++SGY    +++EA+ +F +M+  G+E + V+++ +L  C   
Sbjct: 149 VFDE-ITERNL-VCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAMV 206

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
           G L +G   H    K  + +D  +   L+ MY KCG ++  R++FD++  K    W++MI
Sbjct: 207 GALDIGKWVHAYIKKRMIHVDLELNTALINMYAKCGCIEKAREIFDEMRVKDSKAWSSMI 266

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
            G A +GLA   L ++  M+     P+ VTF+G+LS+CAH G  S G      +   G  
Sbjct: 267 VGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSACAHGGLVSDGKRYWSSMLELGIE 326

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGY 224
            +      ++++  R G + +A      +P    V W  ++  Y
Sbjct: 327 PSMEHYGCMVDLLCRGGLIDEAYDFALIIPTPDPVIWRTLLVAY 370


>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  360 bits (925), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 207/537 (38%), Positives = 300/537 (55%), Gaps = 24/537 (4%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLN-SLVSEAVSLFGKMREQG-VEINSVTMLCLLPICV 58
           VFD SI++ H +  +N LI     + S   EA  L+ KM E+G    +  T   +L  C 
Sbjct: 96  VFD-SIEN-HSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACA 153

Query: 59  DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
                  G   HC  VK G   D  V N L+ +Y  CG +D  RK+FD++PE+ L++WN+
Sbjct: 154 YIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNS 213

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN- 177
           MI    + G     L+L+REM+     PD  T   VLS+CA LG+ S+G      +    
Sbjct: 214 MIDALVRFGEYDSALQLFREMQR-SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKC 272

Query: 178 --GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQ 235
                 +  + N+LI MY +CG+L+ A  +F GM ++ + SW A+I G+  HG  E A+ 
Sbjct: 273 DVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMN 332

Query: 236 LFDEML--KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293
            FD M+  +  +RP+   FV +L AC+H G  +KG +YF  M   Y ++P  EHY C+VD
Sbjct: 333 FFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVD 392

Query: 294 LLGRAGQLNEALELIESMLVEPDGAVWGALLGAC-KIHKNVELAELAFGKVIKLEPMN-- 350
           L+ RAG + EA++++ SM ++PD  +W +LL AC K   +VEL+E     +I  +  N  
Sbjct: 393 LIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNES 452

Query: 351 -----TGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDR 405
                +G YVLLS +Y+ A   + +  VR +M E  ++K+PG S +E+ G  H F  GD 
Sbjct: 453 SNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDT 512

Query: 406 NHHQTVEIYRML----DKLENLVQEHDGTKRS--DQKNSEEHLNDTEVHSEKLAIAFGII 459
           +H QT +IY+ L    D+L ++    D ++    D  N         +HSE+LAIAFG+I
Sbjct: 513 SHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLI 572

Query: 460 NTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           N  P T I + KNLR+C DCH   KL+SK+ + + IVRD  RFHHFK G CSC DYW
Sbjct: 573 NLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 629



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 123/251 (49%), Gaps = 6/251 (2%)

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQN-GLATHVLELYREMKSLG-VCPDAVTFVGVL 155
           V+Y  ++FD +       WN +I   A +         LYR+M   G   PD  TF  VL
Sbjct: 90  VNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVL 149

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
            +CA++   S G +V  QI  +GFG + ++NN LI++Y  CG L  AR +FD MP +++V
Sbjct: 150 KACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLV 209

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
           SW ++I      G  + A+QLF EM +S   PDG    SVLSAC+  G    G      +
Sbjct: 210 SWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFL 268

Query: 276 KNKYGLQPGPEHY--TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNV 333
             K  +    +      ++++  + G L  A ++ + M  + D A W A++     H   
Sbjct: 269 LRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQ-KRDLASWNAMILGFATHGRA 327

Query: 334 ELAELAFGKVI 344
           E A   F +++
Sbjct: 328 EEAMNFFDRMV 338


>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score =  360 bits (925), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 209/535 (39%), Positives = 306/535 (57%), Gaps = 31/535 (5%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLN-SLVSEAVSLFGKMREQGVEI-NSVTMLCLLPICV 58
           VFD SI++ H +  +N LI     + S   EA  L+ KM E+G    +  T   +L  C 
Sbjct: 86  VFD-SIEN-HSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESAPDKHTFPFVLKACA 143

Query: 59  DPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
               L  G   HC  VK G   D  V N L+  Y  CG +D  RK+FD++PE+ L++WN+
Sbjct: 144 YIFGLSEGKQVHCQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPERSLVSWNS 203

Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN- 177
           MI    + G     L+L+R+M+     PD  T   VLS+CA LG+ S+G      +  N 
Sbjct: 204 MIDALVRVGEYDSALQLFRDMQK-SFEPDGYTMQSVLSACAGLGSLSLGTWSHVFLLRNC 262

Query: 178 --GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQ 235
                 +  + N+LI MY +CG+L+ A  +F GM +  + SW A+I G+  HG  E A+ 
Sbjct: 263 DVDVAMDVLIKNSLIEMYCKCGSLRMAEQVFQGMRKHDLASWNAMILGFATHGKAEEAMN 322

Query: 236 LFDEMLKSG--IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293
            FD M+K G  ++P+   FV++L AC+H G+ +KG +YF  M  +YG++P  EHY C++D
Sbjct: 323 CFDCMVKEGKNVKPNSVTFVALLIACNHRGMVNKGRQYFDMMVREYGIEPALEHYGCIID 382

Query: 294 LLGRAGQLNEALELIESMLVEPDGAVWGALLGAC-KIHKNVELAELAFGKVIKLEPMN-- 350
           LL RAG + EA++++ SM ++PD  +W +LL AC K   +VEL+E     +I     N  
Sbjct: 383 LLARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTMEDNQS 442

Query: 351 -----TGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDR 405
                +G YVLLS +Y+ A   + +  VR +M +  ++K+PG S +E+ G  + F  GD 
Sbjct: 443 SNSNCSGAYVLLSRVYASANRWNDVGIVRKLMSDHGIRKEPGCSSIEINGISNEFFAGDT 502

Query: 406 NHHQTVEIYRML----DKLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINT 461
           +H QT +IY+ L    D+L ++V   D T  S ++ S        +HSE+LAIAFG+I+ 
Sbjct: 503 SHPQTKQIYQQLKVIDDRLRSIV---DATNDSSKEYS------LRLHSERLAIAFGLISL 553

Query: 462 SPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
            P T I + KNLR+C DCH   KL+SK+ + + IVRD  RFHHFK G CSC DYW
Sbjct: 554 PPQTPIRIFKNLRVCSDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 608



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 136/290 (46%), Gaps = 10/290 (3%)

Query: 98  VDYGRKLFDQVPEKGLITWNAMISGYAQN-GLATHVLELYREMKSLG-VCPDAVTFVGVL 155
           V+Y  ++FD +       WN +I   A +         LYR+M   G   PD  TF  VL
Sbjct: 80  VNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESAPDKHTFPFVL 139

Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
            +CA++   S G +V  QI  +GF  + ++NN LI+ Y  CG L  AR +FD MP +++V
Sbjct: 140 KACAYIFGLSEGKQVHCQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPERSLV 199

Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL-EYFYG 274
           SW ++I      G  + A+QLF +M KS   PDG    SVLSAC+  G    G   + + 
Sbjct: 200 SWNSMIDALVRVGEYDSALQLFRDMQKS-FEPDGYTMQSVLSACAGLGSLSLGTWSHVFL 258

Query: 275 MKN-KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNV 333
           ++N    +         ++++  + G L  A ++ + M  + D A W A++     H   
Sbjct: 259 LRNCDVDVAMDVLIKNSLIEMYCKCGSLRMAEQVFQGMR-KHDLASWNAMILGFATHGKA 317

Query: 334 ELAELAFGKVIK----LEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRE 379
           E A   F  ++K    ++P +  +  LL           G     MM+RE
Sbjct: 318 EEAMNCFDCMVKEGKNVKPNSVTFVALLIACNHRGMVNKGRQYFDMMVRE 367


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  360 bits (925), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 197/522 (37%), Positives = 285/522 (54%), Gaps = 8/522 (1%)

Query: 1   VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
           +FDE  +    T  +NA +S  VL     +A++ F + R +G E N +T    L  C   
Sbjct: 165 MFDEMPERNIAT--WNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGA 222

Query: 61  GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
            YL LG   H   ++ G + D SV N L+  Y KC  V     +F  + +   ++W +MI
Sbjct: 223 SYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMI 282

Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
             Y QN        ++   +  G+ P       VLS+CA L    VG  V          
Sbjct: 283 VSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVV 342

Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
            N F+ +AL++MY +CG+++ A   FD MP + +V+W A+IGGY   G  ++AV LFDEM
Sbjct: 343 GNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEM 402

Query: 241 LKSGIR--PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
                R  P+   FV VLSACS AG  + G+E F  M+ +YG++PG EHY C+VDLLGRA
Sbjct: 403 TCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRA 462

Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           G + +A + I+ M + P  +VWGALLGA K+    EL ++A   + +L+P+++G +VLLS
Sbjct: 463 GMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLS 522

Query: 359 NIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD 418
           N+++ A   +    VR  M++  +KK  G S++     VH+F   D +H +  EI  ML 
Sbjct: 523 NMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLA 582

Query: 419 KLENLVQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLR 474
           KL   ++      D +        EE   +   HSEK+A+AFG+I+   G  I + KNLR
Sbjct: 583 KLRGEMEAAGYIPDTSFALFDLEEEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKNLR 642

Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
           ICGDCH  IK +S IV R+ IVRD   FH F+   CSC+DYW
Sbjct: 643 ICGDCHSAIKFISGIVGREIIVRDNNLFHRFRDNQCSCRDYW 684



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 106/401 (26%), Positives = 178/401 (44%), Gaps = 12/401 (2%)

Query: 5   SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLW 64
           S+      V + ALI+G V N   + A+  F  MR   ++ N  T  C            
Sbjct: 66  SLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPL 125

Query: 65  LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYA 124
           +G   H + VK G   D  VG     MY K G  +  RK+FD++PE+ + TWNA +S   
Sbjct: 126 VGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSV 185

Query: 125 QNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPF 184
             G     L  + E +  G  P+ +TF   L++CA      +G ++   +  +GF ++  
Sbjct: 186 LEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVS 245

Query: 185 LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
           + N LI+ Y +C  +  +  IF G+ +   VSW ++I  Y  +   E A  +F    K G
Sbjct: 246 VANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEG 305

Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
           I P      SVLSAC+   + + G +  + +  K  +       + +VD+ G+ G + +A
Sbjct: 306 IEPTDFMVSSVLSACAGLSVLEVG-KSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDA 364

Query: 305 LELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI----KLEPMNTGYYVLLSNI 360
               + M  E +   W A++G        ++A   F ++     ++ P    +  +LS  
Sbjct: 365 ERAFDEM-PERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSAC 423

Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSY----VELKGRV 397
            S A +++  M +   MR  R   +PG  +    V+L GR 
Sbjct: 424 -SRAGSVNVGMEIFESMRG-RYGIEPGAEHYACVVDLLGRA 462



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 133/290 (45%), Gaps = 7/290 (2%)

Query: 65  LGMCCHCICVKFGLD--LDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISG 122
           LG   H   +K  LD  L   + N L+ MY K    +  + L    P + ++TW A+I+G
Sbjct: 24  LGRAAHAQIIK-TLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAG 82

Query: 123 YAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN 182
             QNG  T  L  +  M+   + P+  TF     +   L +  VG +V       G  S+
Sbjct: 83  SVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISD 142

Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
            F+  +  +MY++ G  ++AR +FD MP + + +W A +    + G  + A+  F E   
Sbjct: 143 VFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRH 202

Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
            G  P+   F + L+AC+ A     G +  +G   + G +        ++D  G+  Q+ 
Sbjct: 203 EGWEPNLITFCAFLNACAGASYLRLGRQ-LHGFVLQSGFEADVSVANGLIDFYGKCHQVG 261

Query: 303 EALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMN 350
            + E+I S + +P+   W +++ +   +   E A L F +  K  +EP +
Sbjct: 262 CS-EIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTD 310


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  360 bits (925), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 183/506 (36%), Positives = 288/506 (56%), Gaps = 4/506 (0%)

Query: 15  YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
           +  L++G+V +    EA+ LF +M ++G   + V +L  +  C     L  G   H    
Sbjct: 110 WTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQGREIHSAAA 169

Query: 75  KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
             G+D D    N ++ MY KCGS+     +F ++PEK +I+W+ MI+ + QN LA   L 
Sbjct: 170 SCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNELADEALL 229

Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
            ++ M+  G+  D +T+V VL +   +GA  +G  +  +I   G  ++  + N L+NMY 
Sbjct: 230 FFKLMQQEGMELDRITYVSVLDAYTSVGALELGKALHVRIVYAGLDTSIVVGNTLVNMYG 289

Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
           +CG+   AR +FD M  K VVSW A++  YG +G    A+ LFD M   G+RP+   FV+
Sbjct: 290 KCGSPDDARDVFDSMVEKNVVSWNAMLAAYGQNGRSREALALFDSMDLEGVRPNDITFVT 349

Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
           +L  CSH+G     + +F  M+  +G+ P   H+ C++D+LGR+G+L EA ELI++M V 
Sbjct: 350 ILYCCSHSGKFKDAVSHFVEMRQDFGITPREVHFGCLIDMLGRSGKLEEAEELIQAMPVP 409

Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVR 374
            D  +W +LL AC  HK+ + A  A  +  + EP     Y++LSN+Y+  +  D   +VR
Sbjct: 410 ADAVLWTSLLCACVTHKDEDRAARAAEEAFQREPRCAAAYIMLSNLYAALKKWDEAAKVR 469

Query: 375 MMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL--ENLVQEHDGTKR 432
             M +  ++K  G S++E+  +VH F+ GD  H     I++ L +L  E  ++ ++  ++
Sbjct: 470 KRMEQAGVRKQAGRSWIEIDKQVHEFVAGDSIHPDKSRIFKTLQRLMSEMRIKGYEPDRK 529

Query: 433 SDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIV 490
               + EE   D  +  HSEKLA+AFGI +T P T + ++KNLR+C DCH  IK +S + 
Sbjct: 530 VVIHSMEEEEKDEVLFYHSEKLAVAFGIASTPPRTPLCIVKNLRVCSDCHSAIKFISGVE 589

Query: 491 DRQFIVRDATRFHHFKSGFCSCKDYW 516
            R+  VRD+ RFHHF  G CSC DYW
Sbjct: 590 GRRITVRDSNRFHHFDRGECSCGDYW 615



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 128/249 (51%), Gaps = 2/249 (0%)

Query: 78  LDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYR 137
           LD    + N L+ MY KCGS+   +++FD +  K + +W  +++G+ Q+G     ++L+ 
Sbjct: 72  LDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQHKNVFSWTMLMAGFVQSGRGVEAIQLFH 131

Query: 138 EMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG 197
            M   G  PD V  +  + SC    A S G E+     + G  S+    NA+INMY +CG
Sbjct: 132 RMCQEGELPDRVALLKFIDSCGAAKALSQGREIHSAAASCGMDSDLVTANAIINMYGKCG 191

Query: 198 NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257
           ++ +A A+F  MP K V+SW+ +I  +  +   + A+  F  M + G+  D   +VSVL 
Sbjct: 192 SIGEAFAVFTRMPEKNVISWSTMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLD 251

Query: 258 ACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDG 317
           A +  G  + G +  +      GL         +V++ G+ G  ++A ++ +SM VE + 
Sbjct: 252 AYTSVGALELG-KALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSM-VEKNV 309

Query: 318 AVWGALLGA 326
             W A+L A
Sbjct: 310 VSWNAMLAA 318



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 113/212 (53%), Gaps = 4/212 (1%)

Query: 13  VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
           + ++ +I+ +  N L  EA+  F  M+++G+E++ +T + +L      G L LG   H  
Sbjct: 209 ISWSTMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALELGKALHVR 268

Query: 73  CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
            V  GLD    VGN L+ MY KCGS D  R +FD + EK +++WNAM++ Y QNG +   
Sbjct: 269 IVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAAYGQNGRSREA 328

Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLG--AHSVGLEVEQQIQANGFGSNPFLNNALI 190
           L L+  M   GV P+ +TFV +L  C+H G    +V   VE + Q  G          LI
Sbjct: 329 LALFDSMDLEGVRPNDITFVTILYCCSHSGKFKDAVSHFVEMR-QDFGITPREVHFGCLI 387

Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAII 221
           +M  R G L++A  +   MP     V WT+++
Sbjct: 388 DMLGRSGKLEEAEELIQAMPVPADAVLWTSLL 419



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 104/220 (47%), Gaps = 11/220 (5%)

Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
           ++  CA   A   G  + + + +       FL+N L++MY +CG+L +A+ +FD M  K 
Sbjct: 47  LIRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQHKN 106

Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
           V SWT ++ G+   G G  A+QLF  M + G  PD  A +  + +C  A    +G E  +
Sbjct: 107 VFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQGRE-IH 165

Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA-CKIHKN 332
                 G+         ++++ G+ G + EA  +   M  E +   W  ++ A C+    
Sbjct: 166 SAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRM-PEKNVISWSTMIAAFCQ---- 220

Query: 333 VELAE--LAFGKVIKLEPMNTGY--YVLLSNIYSEARNLD 368
            ELA+  L F K+++ E M      YV + + Y+    L+
Sbjct: 221 NELADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALE 260


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.139    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,241,922,913
Number of Sequences: 23463169
Number of extensions: 347516547
Number of successful extensions: 919346
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9482
Number of HSP's successfully gapped in prelim test: 2486
Number of HSP's that attempted gapping in prelim test: 771071
Number of HSP's gapped (non-prelim): 56839
length of query: 516
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 369
effective length of database: 8,910,109,524
effective search space: 3287830414356
effective search space used: 3287830414356
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 79 (35.0 bits)