BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043362
         (516 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MQP|A Chain A, Crystal Structure Of Human Bfl-1 In Complex With Noxa Bh3
           Peptide, Northeast Structural Genomics Consortium Target
           Hr2930
          Length = 161

 Score = 33.5 bits (75), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 14/93 (15%)

Query: 97  SVDYGRKLFDQVPEK----GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFV 152
           SVD  R LF+QV EK    G+I W  +++ +A  G+      L +++    + PD  T+ 
Sbjct: 73  SVDTARTLFNQVMEKEFEDGIINWGRIVTIFAFEGI------LIKKLLRQQIAPDVDTYK 126

Query: 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
            +    A    ++ G    + I+ NG   N F+
Sbjct: 127 EISYFVAEFIMNNTG----EWIRQNGGWENGFV 155


>pdb|3I1H|A Chain A, Crystal Structure Of Human Bfl-1 In Complex With Bak Bh3
           Peptide
          Length = 161

 Score = 33.5 bits (75), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 14/93 (15%)

Query: 97  SVDYGRKLFDQVPEK----GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFV 152
           SVD  R LF+QV EK    G+I W  +++ +A  G+      L +++    + PD  T+ 
Sbjct: 73  SVDTARTLFNQVMEKEFEDGIINWGRIVTIFAFEGI------LIKKLLRQQIAPDVDTYK 126

Query: 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
            +    A    ++ G    + I+ NG   N F+
Sbjct: 127 EISYFVAEFIMNNTG----EWIRQNGGWENGFV 155


>pdb|2VM6|A Chain A, Human Bcl2-A1 In Complex With Bim-Bh3 Peptide
          Length = 150

 Score = 33.5 bits (75), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 14/93 (15%)

Query: 97  SVDYGRKLFDQVPEK----GLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFV 152
           SVD  R LF+QV EK    G+I W  +++ +A  G+      L +++    + PD  T+ 
Sbjct: 64  SVDTARTLFNQVMEKEFEDGIINWGRIVTIFAFEGI------LIKKLLRQQIAPDVDTYK 117

Query: 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
            +    A    ++ G    + I+ NG   N F+
Sbjct: 118 EISYFVAEFIMNNTG----EWIRQNGGWENGFV 146


>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha.
 pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha
          Length = 388

 Score = 32.3 bits (72), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 98/250 (39%), Gaps = 62/250 (24%)

Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSS----CAHL--GAHSVGLEVEQQIQANGFGSNPF 184
           H ++L+R+       PD    + +LSS    C  L   AH   L ++Q         NP 
Sbjct: 21  HCMQLWRQE------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ---------NPL 65

Query: 185 LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAXXXXXXXXXXXEVAVQLFDEMLKSG 244
           L  A    Y+  GN+ K R                           + A++ +   L+  
Sbjct: 66  LAEA----YSNLGNVYKERGQL------------------------QEAIEHYRHALR-- 95

Query: 245 IRPDGT-AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL---LGRAGQ 300
           ++PD    ++++ +A   AG  +  ++ +        LQ  P+ Y    DL   L   G+
Sbjct: 96  LKPDFIDGYINLAAALVAAGDMEGAVQAYVS-----ALQYNPDLYCVRSDLGNLLKALGR 150

Query: 301 LNEALE-LIESMLVEPDGAV-WGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
           L EA    ++++  +P+ AV W  L         + LA   F K + L+P     Y+ L 
Sbjct: 151 LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG 210

Query: 359 NIYSEARNLD 368
           N+  EAR  D
Sbjct: 211 NVLKEARIFD 220


>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
 pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
          Length = 131

 Score = 29.6 bits (65), Expect = 4.0,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 331 KNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIXXXXXXXXXXXLKKDPGYSY 390
           +N E A   +GK I+L P N  Y+   +  YS+  N  G            +  DP YS 
Sbjct: 26  ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAG----AVQDCERAICIDPAYS- 80

Query: 391 VELKGRVHLFMVGDRNHHQTVEIYR 415
            +  GR+ L +     H + V  Y+
Sbjct: 81  -KAYGRMGLALSSLNKHVEAVAYYK 104


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,178,533
Number of Sequences: 62578
Number of extensions: 609176
Number of successful extensions: 1382
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1378
Number of HSP's gapped (non-prelim): 8
length of query: 516
length of database: 14,973,337
effective HSP length: 103
effective length of query: 413
effective length of database: 8,527,803
effective search space: 3521982639
effective search space used: 3521982639
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)