BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043362
(516 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/516 (65%), Positives = 419/516 (81%), Gaps = 2/516 (0%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
VF+E+ +S+ L+VCYNALISGY NS V++A +F +M+E GV ++SVTML L+P+C P
Sbjct: 110 VFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVP 169
Query: 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
YLWLG H CVK GLD + +V N +TMY+KCGSV+ GR+LFD++P KGLITWNA+I
Sbjct: 170 EYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVI 229
Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
SGY+QNGLA VLELY +MKS GVCPD T V VLSSCAHLGA +G EV + +++NGF
Sbjct: 230 SGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFV 289
Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
N F++NA I+MYARCGNL KARA+FD MP K++VSWTA+IG YG+HG GE+ + LFD+M
Sbjct: 290 PNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDM 349
Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
+K GIRPDG FV VLSACSH+GLTDKGLE F MK +Y L+PGPEHY+C+VDLLGRAG+
Sbjct: 350 IKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGR 409
Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
L+EA+E IESM VEPDGAVWGALLGACKIHKNV++AELAF KVI+ EP N GYYVL+SNI
Sbjct: 410 LDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNI 469
Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
YS+++N +GI R+R+MMRER +K PGYSYVE KGRVHLF+ GDR+H QT E++RMLD+L
Sbjct: 470 YSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDEL 529
Query: 421 ENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCH 480
E V E G D+ EE + T HSE+LAIAFGI+N+ PGTEI+V+KNLR+C DCH
Sbjct: 530 ETSVMELAGNMDCDR--GEEVSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCH 587
Query: 481 LFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
+F+K VSKIVDRQF+VRDA+RFH+FK G CSCKDYW
Sbjct: 588 VFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623
Score = 169 bits (427), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 114/388 (29%), Positives = 187/388 (48%), Gaps = 8/388 (2%)
Query: 15 YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
+N + SL SE++SL+ M G ++ + +L C G HC
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80
Query: 75 KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT--WNAMISGYAQNGLATHV 132
K G + + V L++MY KCG V RK+F++ P+ ++ +NA+ISGY N T
Sbjct: 81 KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140
Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
++R MK GV D+VT +G++ C +G + Q G S + N+ I M
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITM 200
Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
Y +CG+++ R +FD MP K +++W A+I GY +G ++L+++M SG+ PD
Sbjct: 201 YMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTL 260
Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
VSVLS+C+H G G E +++ G P + + R G L +A + + M
Sbjct: 261 VSVLSSCAHLGAKKIGHEVGKLVESN-GFVPNVFVSNASISMYARCGNLAKARAVFDIMP 319
Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNIYSEARNLDGI 370
V+ W A++G +H E+ + F +IK + P + ++LS G+
Sbjct: 320 VK-SLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGL 378
Query: 371 MRVRMMMRERRLKKDPGY--SYVELKGR 396
R M RE +L+ P + V+L GR
Sbjct: 379 ELFRAMKREYKLEPGPEHYSCLVDLLGR 406
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 481 bits (1238), Expect = e-135, Method: Compositional matrix adjust.
Identities = 239/513 (46%), Positives = 322/513 (62%), Gaps = 17/513 (3%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
V YNA+I GY N ++SLF ++ G + S T++ L+P+ G+L L H
Sbjct: 288 VAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVS---GHLMLIYAIHGY 344
Query: 73 CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
C+K SV L T+Y K ++ RKLFD+ PEK L +WNAMISGY QNGL
Sbjct: 345 CLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDA 404
Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
+ L+REM+ P+ VT +LS+CA LGA S+G V +++ F S+ +++ ALI M
Sbjct: 405 ISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGM 464
Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
YA+CG++ +AR +FD M +K V+W +I GYG+HG G+ A+ +F EML SGI P F
Sbjct: 465 YAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTF 524
Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
+ VL ACSHAGL +G E F M ++YG +P +HY CMVD+LGRAG L AL+ IE+M
Sbjct: 525 LCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMS 584
Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
+EP +VW LLGAC+IHK+ LA K+ +L+P N GY+VLLSNI+S RN
Sbjct: 585 IEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAAT 644
Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
VR ++R+L K PGY+ +E+ H+F GD++H Q EIY L+KLE ++E
Sbjct: 645 VRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMRE-----A 699
Query: 433 SDQKNSEEHLNDTE---------VHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFI 483
Q +E L+D E VHSE+LAIAFG+I T PGTEI ++KNLR+C DCH
Sbjct: 700 GYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVT 759
Query: 484 KLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
KL+SKI +R +VRDA RFHHFK G CSC DYW
Sbjct: 760 KLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792
Score = 142 bits (357), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 87/324 (26%), Positives = 154/324 (47%), Gaps = 14/324 (4%)
Query: 12 TVCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
T+ +N +ISGY N + E++ +F + E +++ T+L +LP + L LGM H
Sbjct: 185 TILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIH 244
Query: 71 CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
+ K G V +++Y KCG + G LF + + ++ +NAMI GY NG
Sbjct: 245 SLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETE 304
Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHL----GAHSVGLEVEQQIQANGFGSNPFLN 186
L L++E+ G + T V ++ HL H L+ + F S+ ++
Sbjct: 305 LSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLK-------SNFLSHASVS 357
Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
AL +Y++ ++ AR +FD P K++ SW A+I GY +G E A+ LF EM KS
Sbjct: 358 TALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFS 417
Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
P+ +LSAC+ G G ++ + + + T ++ + + G + EA
Sbjct: 418 PNPVTITCILSACAQLGALSLG-KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARR 476
Query: 307 LIESMLVEPDGAVWGALLGACKIH 330
L + ++ + + W ++ +H
Sbjct: 477 LFD-LMTKKNEVTWNTMISGYGLH 499
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 130/251 (51%), Gaps = 6/251 (2%)
Query: 15 YNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGYL--WLGMCCHC 71
+N L+ G+ +N ++S+F +R+ ++ NS T I G+ G H
Sbjct: 86 FNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYA--FAISAASGFRDDRAGRVIHG 143
Query: 72 ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
V G D + +G+ ++ MY K V+ RK+FD++PEK I WN MISGY +N +
Sbjct: 144 QAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVE 203
Query: 132 VLELYREMKSLGVCP-DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
++++R++ + D T + +L + A L +G+++ G S+ ++ I
Sbjct: 204 SIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFI 263
Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
++Y++CG +K A+F + +V++ A+I GY +G E+++ LF E++ SG R +
Sbjct: 264 SLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSS 323
Query: 251 AFVSVLSACSH 261
VS++ H
Sbjct: 324 TLVSLVPVSGH 334
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 454 bits (1167), Expect = e-127, Method: Compositional matrix adjust.
Identities = 233/529 (44%), Positives = 334/529 (63%), Gaps = 15/529 (2%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM------REQGVEINSVTMLCLL 54
VFDE K V + ++I GY LN +AVSLF + + + ++S+ ++ ++
Sbjct: 133 VFDEIPKRN--IVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVI 190
Query: 55 PICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS--VDYGRKLFDQVPEKG 112
C L H +K G D SVGN L+ Y K G V RK+FDQ+ +K
Sbjct: 191 SACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKD 250
Query: 113 LITWNAMISGYAQNGLATHVLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVE 171
+++N+++S YAQ+G++ E++R + K+ V +A+T VL + +H GA +G +
Sbjct: 251 RVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIH 310
Query: 172 QQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGE 231
Q+ G + + ++I+MY +CG ++ AR FD M K V SWTA+I GYG+HGH
Sbjct: 311 DQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAA 370
Query: 232 VAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCM 291
A++LF M+ SG+RP+ FVSVL+ACSHAGL +G +F MK ++G++PG EHY CM
Sbjct: 371 KALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCM 430
Query: 292 VDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNT 351
VDLLGRAG L +A +LI+ M ++PD +W +LL AC+IHKNVELAE++ ++ +L+ N
Sbjct: 431 VDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNC 490
Query: 352 GYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTV 411
GYY+LLS+IY++A + RVRM+M+ R L K PG+S +EL G VH+F++GD H Q
Sbjct: 491 GYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQRE 550
Query: 412 EIYRMLDKLENLVQE----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEI 467
+IY L +L + E + + + EE VHSEKLAIAFGI+NT PG+ +
Sbjct: 551 KIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTV 610
Query: 468 VVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
V+KNLR+C DCH IKL+SKIVDR+F+VRDA RFHHFK G CSC DYW
Sbjct: 611 NVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
Score = 115 bits (287), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 81/339 (23%), Positives = 158/339 (46%), Gaps = 11/339 (3%)
Query: 15 YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
+N++I+ + +EA+ F MR+ + + C + C ++ G H
Sbjct: 44 WNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAF 103
Query: 75 KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
FG D V + L+ MY CG ++ RK+FD++P++ +++W +MI GY NG A +
Sbjct: 104 VFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVS 163
Query: 135 LYREM------KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
L++++ + D++ V V+S+C+ + A + + + GF + N
Sbjct: 164 LFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNT 223
Query: 189 LINMYARCGN--LKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
L++ YA+ G + AR IFD + K VS+ +I+ Y G A ++F ++K+ +
Sbjct: 224 LLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVV 283
Query: 247 P-DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
+ +VL A SH+G G + + + GL+ T ++D+ + G++ A
Sbjct: 284 TFNAITLSTVLLAVSHSGALRIG-KCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETAR 342
Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI 344
+ + M + W A++ +H + A F +I
Sbjct: 343 KAFDRM-KNKNVRSWTAMIAGYGMHGHAAKALELFPAMI 380
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 121/231 (52%), Gaps = 11/231 (4%)
Query: 104 LFDQ-VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162
LF++ V + + +WN++I+ A++G + L + M+ L + P +F + +C+ L
Sbjct: 31 LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90
Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIG 222
G + QQ G+ S+ F+++ALI MY+ CG L+ AR +FD +P++ +VSWT++I
Sbjct: 91 DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIR 150
Query: 223 GYGIHGHGEVAVQLFDEML------KSGIRPDGTAFVSVLSACSHAGLTDKGL-EYFYGM 275
GY ++G+ AV LF ++L + D VSV+SACS + KGL E +
Sbjct: 151 GYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSR--VPAKGLTESIHSF 208
Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEAL-ELIESMLVEPDGAVWGALLG 325
K G G ++D + G+ A+ I +V+ D + +++
Sbjct: 209 VIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMS 259
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 429 bits (1104), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/509 (43%), Positives = 315/509 (61%), Gaps = 7/509 (1%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
V +N++I YV N EA+ +F KM ++GV+ V+++ L C D G L G H +
Sbjct: 303 VSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKL 362
Query: 73 CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
V+ GLD + SV N L++MY KC VD +F ++ + L++WNAMI G+AQNG
Sbjct: 363 SVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDA 422
Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
L + +M+S V PD T+V V+++ A L + + + N F+ AL++M
Sbjct: 423 LNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDM 482
Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
YA+CG + AR IFD M + V +W A+I GYG HG G+ A++LF+EM K I+P+G F
Sbjct: 483 YAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTF 542
Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
+SV+SACSH+GL + GL+ FY MK Y ++ +HY MVDLLGRAG+LNEA + I M
Sbjct: 543 LSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMP 602
Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
V+P V+GA+LGAC+IHKNV AE A ++ +L P + GY+VLL+NIY A + + +
Sbjct: 603 VKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQ 662
Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
VR+ M + L+K PG S VE+K VH F G H + +IY L+KL ++E
Sbjct: 663 VRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPD 722
Query: 433 SD-----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
++ + + +E L T HSEKLAI+FG++NT+ GT I V KNLR+C DCH K +S
Sbjct: 723 TNLVLGVENDVKEQLLST--HSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYIS 780
Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
+ R+ +VRD RFHHFK+G CSC DYW
Sbjct: 781 LVTGREIVVRDMQRFHHFKNGACSCGDYW 809
Score = 176 bits (445), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 162/300 (54%), Gaps = 1/300 (0%)
Query: 9 THLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMC 68
+ L V Y+ ++ G+ S + +A+ F +MR VE LL +C D L +G
Sbjct: 97 SKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKE 156
Query: 69 CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
H + VK G LD L MY KC V+ RK+FD++PE+ L++WN +++GY+QNG+
Sbjct: 157 IHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGM 216
Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
A LE+ + M + P +T V VL + + L SVG E+ +GF S ++ A
Sbjct: 217 ARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTA 276
Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
L++MYA+CG+L+ AR +FDGM + VVSW ++I Y + + + A+ +F +ML G++P
Sbjct: 277 LVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPT 336
Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
+ + L AC+ G ++G + + + + GL ++ + + +++ A +
Sbjct: 337 DVSVMGALHACADLGDLERG-RFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMF 395
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 163/318 (51%), Gaps = 2/318 (0%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
V +N +++GY N + A+ + M E+ ++ + +T++ +LP + +G H
Sbjct: 202 VSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGY 261
Query: 73 CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
++ G D ++ L+ MY KCGS++ R+LFD + E+ +++WN+MI Y QN
Sbjct: 262 AMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEA 321
Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
+ ++++M GV P V+ +G L +CA LG G + + G N + N+LI+M
Sbjct: 322 MLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISM 381
Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
Y +C + A ++F + +T+VSW A+I G+ +G A+ F +M ++PD +
Sbjct: 382 YCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTY 441
Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
VSV++A + +T ++ +G+ + L T +VD+ + G + A LI M+
Sbjct: 442 VSVITAIAELSITHHA-KWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIA-RLIFDMM 499
Query: 313 VEPDGAVWGALLGACKIH 330
E W A++ H
Sbjct: 500 SERHVTTWNAMIDGYGTH 517
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 127/257 (49%), Gaps = 2/257 (0%)
Query: 88 LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
L++++ + GSVD ++F+ + K + ++ M+ G+A+ L+ + M+ V P
Sbjct: 75 LVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPV 134
Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
F +L C VG E+ + +GF + F L NMYA+C + +AR +FD
Sbjct: 135 VYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFD 194
Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
MP + +VSW I+ GY +G +A+++ M + ++P VSVL A S L
Sbjct: 195 RMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISV 254
Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
G E +G + G T +VD+ + G L A +L + ML E + W +++ A
Sbjct: 255 GKE-IHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGML-ERNVVSWNSMIDAY 312
Query: 328 KIHKNVELAELAFGKVI 344
++N + A L F K++
Sbjct: 313 VQNENPKEAMLIFQKML 329
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 2/149 (1%)
Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
NG F L++++ R G++ +A +F+ + K V + ++ G+ + A+Q
Sbjct: 63 NGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQF 122
Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLG 296
F M + P F +L C G E +G+ K G T + ++
Sbjct: 123 FVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKE-IHGLLVKSGFSLDLFAMTGLENMYA 181
Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLG 325
+ Q+NEA ++ + M E D W ++
Sbjct: 182 KCRQVNEARKVFDRM-PERDLVSWNTIVA 209
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 429 bits (1102), Expect = e-119, Method: Compositional matrix adjust.
Identities = 214/511 (41%), Positives = 312/511 (61%), Gaps = 10/511 (1%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
V YN +I+GY + + +A+ + +M ++ +S T+ +LPI + + G H
Sbjct: 208 VSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGY 267
Query: 73 CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
++ G+D D +G+ L+ MY K ++ ++F ++ + I+WN++++GY QNG
Sbjct: 268 VIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEA 327
Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
L L+R+M + V P AV F V+ +CAHL +G ++ + GFGSN F+ +AL++M
Sbjct: 328 LRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDM 387
Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
Y++CGN+K AR IFD M VSWTAII G+ +HGHG AV LF+EM + G++P+ AF
Sbjct: 388 YSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAF 447
Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
V+VL+ACSH GL D+ YF M YGL EHY + DLLGRAG+L EA I M
Sbjct: 448 VAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMC 507
Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
VEP G+VW LL +C +HKN+ELAE K+ ++ N G YVL+ N+Y+ + +
Sbjct: 508 VEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAK 567
Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL------ENLVQE 426
+R+ MR++ L+K P S++E+K + H F+ GDR+H +I L + E V +
Sbjct: 568 LRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVAD 627
Query: 427 HDGTKRS-DQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
G D+++ E L HSE+LA+AFGIINT PGT I V KN+RIC DCH+ IK
Sbjct: 628 TSGVLHDVDEEHKRELLFG---HSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKF 684
Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
+SKI +R+ IVRD +RFHHF G CSC DYW
Sbjct: 685 ISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/354 (24%), Positives = 162/354 (45%), Gaps = 38/354 (10%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
+ + ++I + SL S+A++ F +MR G + +L C L G H
Sbjct: 71 LAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGF 130
Query: 73 CVKFGLDLDFSVGNCLMTMYVKC---GS-------------------------------- 97
V+ G+D D GN LM MY K GS
Sbjct: 131 IVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPF 190
Query: 98 -VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS 156
+D R++F+ +P K ++++N +I+GYAQ+G+ L + REM + + PD+ T VL
Sbjct: 191 GIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLP 250
Query: 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS 216
+ G E+ + G S+ ++ ++L++MYA+ ++ + +F + + +S
Sbjct: 251 IFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGIS 310
Query: 217 WTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK 276
W +++ GY +G A++LF +M+ + ++P AF SV+ AC+H G + +G
Sbjct: 311 WNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQ-LHGYV 369
Query: 277 NKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
+ G + +VD+ + G + A ++ + M V D W A++ +H
Sbjct: 370 LRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNV-LDEVSWTAIIMGHALH 422
Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 117/282 (41%), Gaps = 38/282 (13%)
Query: 80 LDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM 139
L + + ++++Y + LF + ++ W ++I + L + L + EM
Sbjct: 37 LSHTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEM 96
Query: 140 KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYAR---- 195
++ G CPD F VL SC + G V I G + + NAL+NMYA+
Sbjct: 97 RASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGM 156
Query: 196 -----CGN---------------------------LKKARAIFDGMPRKTVVSWTAIIGG 223
GN + R +F+ MPRK VVS+ II G
Sbjct: 157 GSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAG 216
Query: 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP 283
Y G E A+++ EM + ++PD SVL S KG E +G + G+
Sbjct: 217 YAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKE-IHGYVIRKGIDS 275
Query: 284 GPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
+ +VD+ ++ ++ ++ E + S L DG W +L+
Sbjct: 276 DVYIGSSLVDMYAKSARIEDS-ERVFSRLYCRDGISWNSLVA 316
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 421 bits (1082), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/512 (40%), Positives = 316/512 (61%), Gaps = 10/512 (1%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
+ +N++I Y LN A+SLF +MR ++ + +T++ L I G +
Sbjct: 314 ISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGF 373
Query: 73 CVKFGLDL-DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
++ G L D ++GN ++ MY K G VD R +F+ +P +I+WN +ISGYAQNG A+
Sbjct: 374 TLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASE 433
Query: 132 VLELYREMKSLG-VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
+E+Y M+ G + + T+V VL +C+ GA G+++ ++ NG + F+ +L
Sbjct: 434 AIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLA 493
Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
+MY +CG L+ A ++F +PR V W +I +G HGHGE AV LF EML G++PD
Sbjct: 494 DMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHI 553
Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
FV++LSACSH+GL D+G F M+ YG+ P +HY CMVD+ GRAGQL AL+ I+S
Sbjct: 554 TFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKS 613
Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
M ++PD ++WGALL AC++H NV+L ++A + ++EP + GY+VLLSN+Y+ A +G+
Sbjct: 614 MSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGV 673
Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLE------NLV 424
+R + + L+K PG+S +E+ +V +F G++ H E+YR L L+ V
Sbjct: 674 DEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYV 733
Query: 425 QEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
+H + + + +EH+ HSE+LAIAF +I T T I + KNLR+CGDCH K
Sbjct: 734 PDHRFVLQDVEDDEKEHI--LMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTK 791
Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
+SKI +R+ IVRD+ RFHHFK+G CSC DYW
Sbjct: 792 FISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
Score = 132 bits (331), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 130/253 (51%), Gaps = 14/253 (5%)
Query: 15 YNALISGYVLNSLVSEAVSLFGK-MREQGVEINSVTMLCLLPIC---VDPGYLWLGMCCH 70
+N +ISGY SE + F M G+ + T +L C +D G H
Sbjct: 120 WNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID------GNKIH 173
Query: 71 CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
C+ +KFG D V L+ +Y + +V R LFD++P + + +WNAMISGY Q+G A
Sbjct: 174 CLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAK 233
Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
L L ++++ D+VT V +LS+C G + G+ + +G S F++N LI
Sbjct: 234 EALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLI 289
Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
++YA G L+ + +FD M + ++SW +II Y ++ A+ LF EM S I+PD
Sbjct: 290 DLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCL 349
Query: 251 AFVSVLSACSHAG 263
+S+ S S G
Sbjct: 350 TLISLASILSQLG 362
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 128/251 (50%), Gaps = 20/251 (7%)
Query: 88 LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYRE-MKSLGVCP 146
L+ +Y G+V R FD + + + WN MISGY + G ++ V+ + M S G+ P
Sbjct: 92 LVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTP 151
Query: 147 DAVTFVGVLSSCAHL----GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202
D TF VL +C + H + L+ GF + ++ +LI++Y+R + A
Sbjct: 152 DYRTFPSVLKACRTVIDGNKIHCLALKF-------GFMWDVYVAASLIHLYSRYKAVGNA 204
Query: 203 RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP-DGTAFVSVLSACSH 261
R +FD MP + + SW A+I GY G+ + A+ L +G+R D VS+LSAC+
Sbjct: 205 RILFDEMPVRDMGSWNAMISGYCQSGNAKEALT-----LSNGLRAMDSVTVVSLLSACTE 259
Query: 262 AGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWG 321
AG ++G+ + K+GL+ ++DL G+L + ++ + M V D W
Sbjct: 260 AGDFNRGVT-IHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVR-DLISWN 317
Query: 322 ALLGACKIHKN 332
+++ A ++++
Sbjct: 318 SIIKAYELNEQ 328
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 91/203 (44%), Gaps = 17/203 (8%)
Query: 168 LEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH 227
L V +QIQ N ++ L+N+Y GN+ AR FD + + V +W +I GYG
Sbjct: 77 LVVSKQIQ------NVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRA 130
Query: 228 GHGEVAVQLFDE-MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPE 286
G+ ++ F ML SG+ PD F SVL AC +K + + K+G
Sbjct: 131 GNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNK----IHCLALKFGFMWDVY 186
Query: 287 HYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL-GACKIHKNVELAELAFGKVIK 345
++ L R + A L + M V G+ W A++ G C+ E L+ G
Sbjct: 187 VAASLIHLYSRYKAVGNARILFDEMPVRDMGS-WNAMISGYCQSGNAKEALTLSNG---- 241
Query: 346 LEPMNTGYYVLLSNIYSEARNLD 368
L M++ V L + +EA + +
Sbjct: 242 LRAMDSVTVVSLLSACTEAGDFN 264
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 417 bits (1072), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/510 (40%), Positives = 321/510 (62%), Gaps = 9/510 (1%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
V + A++S Y N EA+ +F +MR+ V+ + V ++ +L L G H
Sbjct: 188 VSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHAS 247
Query: 73 CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
VK GL+++ + L TMY KCG V + LFD++ LI WNAMISGYA+NG A
Sbjct: 248 VVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREA 307
Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
++++ EM + V PD ++ +S+CA +G+ + + + + + + F+++ALI+M
Sbjct: 308 IDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDM 367
Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
+A+CG+++ AR +FD + VV W+A+I GYG+HG A+ L+ M + G+ P+ F
Sbjct: 368 FAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTF 427
Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
+ +L AC+H+G+ +G +F M + + + P +HY C++DLLGRAG L++A E+I+ M
Sbjct: 428 LGLLMACNHSGMVREGWWFFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMP 486
Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
V+P VWGALL ACK H++VEL E A ++ ++P NTG+YV LSN+Y+ AR D +
Sbjct: 487 VQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAE 546
Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
VR+ M+E+ L KD G S+VE++GR+ F VGD++H + EI R ++ +E+ ++E G
Sbjct: 547 VRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKE--GGFV 604
Query: 433 SDQKNSEEHLNDTEV------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
+++ S LND E HSE++AIA+G+I+T GT + + KNLR C +CH KL+
Sbjct: 605 ANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLI 664
Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
SK+VDR+ +VRD RFHHFK G CSC DYW
Sbjct: 665 SKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694
Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 160/319 (50%), Gaps = 6/319 (1%)
Query: 15 YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
+NA+I GY N+ +A+ ++ M+ V +S T LL C +L +G H
Sbjct: 87 WNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVF 146
Query: 75 KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFD--QVPEKGLITWNAMISGYAQNGLATHV 132
+ G D D V N L+ +Y KC + R +F+ +PE+ +++W A++S YAQNG
Sbjct: 147 RLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEA 206
Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
LE++ +M+ + V PD V V VL++ L G + + G P L +L M
Sbjct: 207 LEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTM 266
Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
YA+CG + A+ +FD M ++ W A+I GY +G+ A+ +F EM+ +RPD +
Sbjct: 267 YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISI 326
Query: 253 VSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
S +SAC+ G ++ Y Y ++ Y + + ++D+ + G + E L+
Sbjct: 327 TSAISACAQVGSLEQARSMYEYVGRSDY--RDDVFISSALIDMFAKCGSV-EGARLVFDR 383
Query: 312 LVEPDGAVWGALLGACKIH 330
++ D VW A++ +H
Sbjct: 384 TLDRDVVVWSAMIVGYGLH 402
Score = 139 bits (349), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 125/232 (53%), Gaps = 4/232 (1%)
Query: 96 GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
G + + R++FD +P + WNA+I GY++N L +Y M+ V PD+ TF +L
Sbjct: 67 GDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLL 126
Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG--MPRKT 213
+C+ L +G V Q+ GF ++ F+ N LI +YA+C L AR +F+G +P +T
Sbjct: 127 KACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERT 186
Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
+VSWTAI+ Y +G A+++F +M K ++PD A VSVL+A + +G +
Sbjct: 187 IVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQG-RSIH 245
Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
K GL+ P+ + + + GQ+ A L + M P+ +W A++
Sbjct: 246 ASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKM-KSPNLILWNAMIS 296
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 39/214 (18%)
Query: 172 QQIQAN----GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIH 227
+QI A G + FL LI+ + G++ AR +FD +PR + W AII GY +
Sbjct: 38 KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97
Query: 228 GHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS-----------HAGL----------TD 266
H + A+ ++ M + + PD F +L ACS HA +
Sbjct: 98 NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQ 157
Query: 267 KGLEYFYGMKNKYGLQ-------PGPEH----YTCMVDLLGRAGQLNEALELIESML--- 312
GL Y + G P PE +T +V + G+ EALE+ M
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMD 217
Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
V+PD ++L A ++++ V+K+
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKM 251
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 416 bits (1070), Expect = e-115, Method: Compositional matrix adjust.
Identities = 218/521 (41%), Positives = 319/521 (61%), Gaps = 21/521 (4%)
Query: 15 YNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
+NA+I+GY N EA+ LF M E G+ NS TM ++P CV G H
Sbjct: 372 WNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFV 431
Query: 74 VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
VK GLD D V N LM MY + G +D ++F ++ ++ L+TWN MI+GY + L
Sbjct: 432 VKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDAL 491
Query: 134 ELYREMKSL-----------GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN 182
L +M++L + P+++T + +L SCA L A + G E+ N ++
Sbjct: 492 LLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATD 551
Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
+ +AL++MYA+CG L+ +R +FD +P+K V++W II YG+HG+G+ A+ L M+
Sbjct: 552 VAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMV 611
Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
G++P+ F+SV +ACSH+G+ D+GL FY MK YG++P +HY C+VDLLGRAG++
Sbjct: 612 QGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIK 671
Query: 303 EALELIESMLVEPDGA-VWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIY 361
EA +L+ M + + A W +LLGA +IH N+E+ E+A +I+LEP +YVLL+NIY
Sbjct: 672 EAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIY 731
Query: 362 SEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLE 421
S A D VR M+E+ ++K+PG S++E VH F+ GD +H Q+ ++ L+ L
Sbjct: 732 SSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLW 791
Query: 422 NLVQEHDGTKRSD--QKNSEEHLNDTEV----HSEKLAIAFGIINTSPGTEIVVMKNLRI 475
+++ + N EE ++ E+ HSEKLAIAFGI+NTSPGT I V KNLR+
Sbjct: 792 ERMRKEGYVPDTSCVLHNVEE--DEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRV 849
Query: 476 CGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
C DCHL K +SKIVDR+ I+RD RFH FK+G CSC DYW
Sbjct: 850 CNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 103/352 (29%), Positives = 163/352 (46%), Gaps = 10/352 (2%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD- 59
VFD S V +N+LIS A+ F M ++ VE +S T++ ++ C +
Sbjct: 155 VFDRI--SERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 212
Query: 60 --PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWN 117
P L +G H ++ G +L+ + N L+ MY K G + + L + L+TWN
Sbjct: 213 PMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWN 271
Query: 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
++S QN LE REM GV PD T VL +C+HL G E+ N
Sbjct: 272 TVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKN 331
Query: 178 G-FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
G N F+ +AL++MY C + R +FDGM + + W A+I GY + H + A+ L
Sbjct: 332 GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLL 391
Query: 237 FDEMLKS-GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295
F M +S G+ + T V+ AC +G + E +G K GL ++D+
Sbjct: 392 FIGMEESAGLLANSTTMAGVVPACVRSGAFSRK-EAIHGFVVKRGLDRDRFVQNTLMDMY 450
Query: 296 GRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE 347
R G+++ A+ + M + D W ++ ++ E A L K+ LE
Sbjct: 451 SRLGKIDIAMRIFGKM-EDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLE 501
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 152/328 (46%), Gaps = 8/328 (2%)
Query: 18 LISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFG 77
L+ V ++L+ EAV + M G++ ++ LL D + LG H KFG
Sbjct: 68 LLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFG 127
Query: 78 LDLD-FSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY 136
+D +V N L+ +Y KCG K+FD++ E+ ++WN++IS LE +
Sbjct: 128 YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAF 187
Query: 137 REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGS---NPFLNNALINMY 193
R M V P + T V V+++C++L GL + +Q+ A G N F+ N L+ MY
Sbjct: 188 RCMLDENVEPSSFTLVSVVTACSNLPMPE-GLMMGKQVHAYGLRKGELNSFIINTLVAMY 246
Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
+ G L ++ + + +V+W ++ + A++ EM+ G+ PD
Sbjct: 247 GKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTIS 306
Query: 254 SVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
SVL ACSH + G E + Y +KN L + +VD+ Q+ + + M
Sbjct: 307 SVLPACSHLEMLRTGKELHAYALKNG-SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMF 365
Query: 313 VEPDGAVWGALLGACKIHKNVELAELAF 340
G +W A++ +++ + A L F
Sbjct: 366 DRKIG-LWNAMIAGYSQNEHDKEALLLF 392
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 108/251 (43%), Gaps = 42/251 (16%)
Query: 116 WNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175
W ++ ++ L + Y +M LG+ PD F +L + A L +G ++ +
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124
Query: 176 ANGFGSNPF-LNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
G+G + + N L+N+Y +CG+ +FD + + VSW ++I E+A+
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184
Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMK-NKYGLQPGPEH---YTC 290
+ F ML + P VSV++ACS+ + + GL G + + YGL+ G +
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPE-GL--MMGKQVHAYGLRKGELNSFIINT 241
Query: 291 MVDLLGRAG-------------------------------QLNEALELIESML---VEPD 316
+V + G+ G QL EALE + M+ VEPD
Sbjct: 242 LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 301
Query: 317 GAVWGALLGAC 327
++L AC
Sbjct: 302 EFTISSVLPAC 312
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
VFD+ + +T +N +I Y ++ EA+ L M QGV+ N VT + + C
Sbjct: 574 VFDQIPQKNVIT--WNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHS 631
Query: 61 GYLWLGM-CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP 109
G + G+ + + +G++ C++ + + G + +L + +P
Sbjct: 632 GMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMP 681
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 415 bits (1067), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/522 (42%), Positives = 312/522 (59%), Gaps = 20/522 (3%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
V ++A ISGY L EA+ + +M G++ N VT++ +L C G L G HC
Sbjct: 331 VTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCY 390
Query: 73 CVKFGLDL-------DFSVGNCLMTMYVKCGSVDYGRKLFDQVP--EKGLITWNAMISGY 123
+K+ +DL + V N L+ MY KC VD R +FD + E+ ++TW MI GY
Sbjct: 391 AIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGY 450
Query: 124 AQNGLATHVLELYREM--KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGS 181
+Q+G A LEL EM + P+A T L +CA L A +G ++ N +
Sbjct: 451 SQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNA 510
Query: 182 NP-FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
P F++N LI+MYA+CG++ AR +FD M K V+WT+++ GYG+HG+GE A+ +FDEM
Sbjct: 511 VPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEM 570
Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
+ G + DG + VL ACSH+G+ D+G+EYF MK +G+ PGPEHY C+VDLLGRAG+
Sbjct: 571 RRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGR 630
Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
LN AL LIE M +EP VW A L C+IH VEL E A K+ +L + G Y LLSN+
Sbjct: 631 LNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNL 690
Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
Y+ A + R+R +MR + +KK PG S+VE F VGD+ H EIY++L L
Sbjct: 691 YANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVL--L 748
Query: 421 ENLVQEHDGTKRSDQKNSEEHLNDTEV------HSEKLAIAFGIINTSPGTEIVVMKNLR 474
+++ + D + + ++D E HSEKLA+A+GI+ T G I + KNLR
Sbjct: 749 DHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLR 808
Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
+CGDCH +S+I+D I+RD++RFHHFK+G CSCK YW
Sbjct: 809 VCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850
Score = 165 bits (417), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 112/378 (29%), Positives = 177/378 (46%), Gaps = 52/378 (13%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVD 59
VFDE S V +N++I Y A+ +F +M E G +++T++ +LP C
Sbjct: 184 VFDE--MSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCAS 241
Query: 60 PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
G LG HC V + + VGNCL+ MY KCG +D +F + K +++WNAM
Sbjct: 242 LGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAM 301
Query: 120 -----------------------------------ISGYAQNGLATHVLELYREMKSLGV 144
ISGYAQ GL L + R+M S G+
Sbjct: 302 VAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGI 361
Query: 145 CPDAVTFVGVLSSCAHLGA-------HSVGLEVEQQIQANGFGSNPFLNNALINMYARCG 197
P+ VT + VLS CA +GA H ++ ++ NG G + N LI+MYA+C
Sbjct: 362 KPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCK 421
Query: 198 NLKKARAIFDGMPRKT--VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG--IRPDGTAFV 253
+ ARA+FD + K VV+WT +IGGY HG A++L EM + RP+
Sbjct: 422 KVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTIS 481
Query: 254 SVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
L AC+ G + + Y ++N+ P C++D+ + G +++A + ++M+
Sbjct: 482 CALVACASLAALRIGKQIHAYALRNQQNAVPLFVS-NCLIDMYAKCGSISDARLVFDNMM 540
Query: 313 VEPDGAVWGALLGACKIH 330
+ + W +L+ +H
Sbjct: 541 AKNE-VTWTSLMTGYGMH 557
Score = 152 bits (383), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 107/381 (28%), Positives = 175/381 (45%), Gaps = 47/381 (12%)
Query: 15 YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
+N+LI Y N ++ + LFG M ++ T + C + + G H + +
Sbjct: 95 WNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSL 154
Query: 75 KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
G + VGN L+ MY +C S+ RK+FD++ +++WN++I YA+ G LE
Sbjct: 155 VTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALE 214
Query: 135 LYREMKS-LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
++ M + G PD +T V VL CA LG HS+G ++ + N F+ N L++MY
Sbjct: 215 MFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMY 274
Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD--------------- 238
A+CG + +A +F M K VVSW A++ GY G E AV+LF+
Sbjct: 275 AKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWS 334
Query: 239 --------------------EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKN 277
+ML SGI+P+ +SVLS C+ G G E + Y +K
Sbjct: 335 AAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKY 394
Query: 278 KYGLQP---GPEHYTC--MVDLLGRAGQLNEALELIESMLV-EPDGAVWGALLGACKIH- 330
L+ G E+ ++D+ + +++ A + +S+ E D W ++G H
Sbjct: 395 PIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHG 454
Query: 331 ---KNVELAELAFGKVIKLEP 348
K +EL F + + P
Sbjct: 455 DANKALELLSEMFEEDCQTRP 475
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 123/255 (48%), Gaps = 6/255 (2%)
Query: 74 VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVP--EKGLITWNAMISGYAQNGLATH 131
+ FG+ L ++ + L++ Y+ G + + L + P + G+ WN++I Y NG A
Sbjct: 52 LSFGI-LTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANK 110
Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
L L+ M SL PD TF V +C + + G GF SN F+ NAL+
Sbjct: 111 CLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVA 170
Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS-GIRPDGT 250
MY+RC +L AR +FD M VVSW +II Y G +VA+++F M G RPD
Sbjct: 171 MYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNI 230
Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
V+VL C+ G G + +Q C+VD+ + G ++EA + +
Sbjct: 231 TLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQ-NMFVGNCLVDMYAKCGMMDEANTVFSN 289
Query: 311 MLVEPDGAVWGALLG 325
M V+ D W A++
Sbjct: 290 MSVK-DVVSWNAMVA 303
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 414 bits (1065), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/526 (39%), Positives = 316/526 (60%), Gaps = 26/526 (4%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
+FDES T + A++SGY+ N +V EA LF KM E+ N V+ +L V
Sbjct: 272 LFDESPVQDVFT--WTAMVSGYIQNRMVEEARELFDKMPER----NEVSWNAMLAGYVQG 325
Query: 61 GYLWLG------MCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLI 114
+ + M C + S N ++T Y +CG + + LFD++P++ +
Sbjct: 326 ERMEMAKELFDVMPCRNV----------STWNTMITGYAQCGKISEAKNLFDKMPKRDPV 375
Query: 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
+W AMI+GY+Q+G + L L+ +M+ G + +F LS+CA + A +G ++ ++
Sbjct: 376 SWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRL 435
Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
G+ + F+ NAL+ MY +CG++++A +F M K +VSW +I GY HG GEVA+
Sbjct: 436 VKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVAL 495
Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
+ F+ M + G++PD V+VLSACSH GL DKG +YFY M YG+ P +HY CMVDL
Sbjct: 496 RFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDL 555
Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
LGRAG L +A L+++M EPD A+WG LLGA ++H N ELAE A K+ +EP N+G Y
Sbjct: 556 LGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMY 615
Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
VLLSN+Y+ + + ++R+ MR++ +KK PGYS++E++ + H F VGD H + EI+
Sbjct: 616 VLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIF 675
Query: 415 RMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVM 470
L++L+ +++ ++ EE HSE+LA+A+GI+ S G I V+
Sbjct: 676 AFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVI 735
Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
KNLR+C DCH IK +++I R I+RD RFHHFK G CSC DYW
Sbjct: 736 KNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
Score = 125 bits (313), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 103/340 (30%), Positives = 162/340 (47%), Gaps = 29/340 (8%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
V +NAL+S YV NS + EA LF K RE V+ CLL G++
Sbjct: 189 VSWNALLSAYVQNSKMEEACMLF-KSRENWA---LVSWNCLLG-----GFVKKKKIVEAR 239
Query: 73 CVKFGLDL-DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
+++ D N ++T Y + G +D R+LFD+ P + + TW AM+SGY QN +
Sbjct: 240 QFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEE 299
Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN----N 187
EL+ +M P+ +S A L + G +E + F P N N
Sbjct: 300 ARELFDKM------PER----NEVSWNAMLAGYVQGERMEMAKEL--FDVMPCRNVSTWN 347
Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
+I YA+CG + +A+ +FD MP++ VSW A+I GY GH A++LF +M + G R
Sbjct: 348 TMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRL 407
Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
+ ++F S LS C+ + G + +G K G + G ++ + + G + EA +L
Sbjct: 408 NRSSFSSALSTCADVVALELGKQ-LHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDL 466
Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE 347
+ M D W ++ H E+A L F + +K E
Sbjct: 467 FKEM-AGKDIVSWNTMIAGYSRHGFGEVA-LRFFESMKRE 504
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 134/316 (42%), Gaps = 34/316 (10%)
Query: 62 YLWLGMCCHCICVKFGLDLDFSVG-NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
Y+ G C + V + SV N +++ Y++ G + RKLFD++PE+ L++WN MI
Sbjct: 74 YMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMI 133
Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
GY +N EL+ M VC G + A SV + ++
Sbjct: 134 KGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEK------- 186
Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
N NAL++ Y + +++A +F +VSW ++GG+ A Q FD M
Sbjct: 187 -NDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSM 245
Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH----YTCMVDLLG 296
+R D ++ ++++ + +G D+ + F P +T MV
Sbjct: 246 ---NVR-DVVSWNTIITGYAQSGKIDEARQLF---------DESPVQDVFTWTAMVSGYI 292
Query: 297 RAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG-----KVIKLEPMNT 351
+ + EA EL + M E + W A+L + +E+A+ F V M T
Sbjct: 293 QNRMVEEARELFDKM-PERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMIT 351
Query: 352 GYYVLLSNIYSEARNL 367
GY SEA+NL
Sbjct: 352 GY--AQCGKISEAKNL 365
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 117/270 (43%), Gaps = 28/270 (10%)
Query: 79 DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYRE 138
D D N ++ Y++ G + ++F ++P +++N MISGY +NG +L+ E
Sbjct: 61 DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120
Query: 139 MKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGN 198
M + V G + + +LG E+ + + N +++ YA+ G
Sbjct: 121 MPERDLVSWNVMIKGYVRN-RNLGKARELFEIMPERDVCSW-------NTMLSGYAQNGC 172
Query: 199 LKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSA 258
+ AR++FD MP K VSW A++ Y + E A LF + A VS
Sbjct: 173 VDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSR-------ENWALVSW--N 223
Query: 259 CSHAGLTDK-----GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
C G K ++F M + + + ++ ++G+++EA +L + V
Sbjct: 224 CLLGGFVKKKKIVEARQFFDSMNVRDVVS-----WNTIITGYAQSGKIDEARQLFDESPV 278
Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKV 343
+ D W A++ ++ VE A F K+
Sbjct: 279 Q-DVFTWTAMVSGYIQNRMVEEARELFDKM 307
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 80/195 (41%), Gaps = 27/195 (13%)
Query: 159 AHLGAHSVGLEVEQQIQANGFGSNPFLN---------NALINMYARCGNLKKARAIFDGM 209
AH A+ L+ Q Q + P L N I+ Y R G +A +F M
Sbjct: 31 AHGAANFHSLKRATQTQIQKSQTKPLLKCGDSDIKEWNVAISSYMRTGRCNEALRVFKRM 90
Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
PR + VS+ +I GY +G E+A +LFDEM + D ++ ++ K
Sbjct: 91 PRWSSVSYNGMISGYLRNGEFELARKLFDEMPER----DLVSWNVMIKGYVRNRNLGKAR 146
Query: 270 EYFYGMKNKYGLQPGPEHYTC----MVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
E F M PE C M+ + G +++A + + M E + W ALL
Sbjct: 147 ELFEIM---------PERDVCSWNTMLSGYAQNGCVDDARSVFDRM-PEKNDVSWNALLS 196
Query: 326 ACKIHKNVELAELAF 340
A + +E A + F
Sbjct: 197 AYVQNSKMEEACMLF 211
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 411 bits (1057), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/514 (41%), Positives = 314/514 (61%), Gaps = 5/514 (0%)
Query: 8 STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
S V Y ++I+GY L EAV LF +M E+G+ + T+ +L C L G
Sbjct: 358 SDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGK 417
Query: 68 CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
H + L D V N LM MY KCGS+ +F ++ K +I+WN +I GY++N
Sbjct: 418 RVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNC 477
Query: 128 LATHVLELYREM-KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
A L L+ + + PD T VL +CA L A G E+ I NG+ S+ +
Sbjct: 478 YANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVA 537
Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
N+L++MYA+CG L A +FD + K +VSWT +I GYG+HG G+ A+ LF++M ++GI
Sbjct: 538 NSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIE 597
Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
D +FVS+L ACSH+GL D+G +F M+++ ++P EHY C+VD+L R G L +A
Sbjct: 598 ADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYR 657
Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARN 366
IE+M + PD +WGALL C+IH +V+LAE KV +LEP NTGYYVL++NIY+EA
Sbjct: 658 FIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEK 717
Query: 367 LDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLE-NLVQ 425
+ + R+R + +R L+K+PG S++E+KGRV++F+ GD ++ +T I L K+ +++
Sbjct: 718 WEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIE 777
Query: 426 E-HDGTKRSDQKNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLF 482
E + + ++EE + + HSEKLA+A GII++ G I V KNLR+CGDCH
Sbjct: 778 EGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEM 837
Query: 483 IKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
K +SK+ R+ ++RD+ RFH FK G CSC+ +W
Sbjct: 838 AKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871
Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/333 (32%), Positives = 177/333 (53%), Gaps = 9/333 (2%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
VFDE + + +N++I+GYV N L + +S+F +M G+EI+ T++ + C D
Sbjct: 252 VFDEMTERD--VISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADS 309
Query: 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
+ LG H I VK + N L+ MY KCG +D + +F ++ ++ ++++ +MI
Sbjct: 310 RLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMI 369
Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
+GYA+ GLA ++L+ EM+ G+ PD T VL+ CA G V + I+ N G
Sbjct: 370 AGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLG 429
Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
+ F++NAL++MYA+CG++++A +F M K ++SW IIGGY + + A+ LF+ +
Sbjct: 430 FDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLL 489
Query: 241 LKSG-IRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYT-CMVDLLGR 297
L+ PD VL AC+ DKG E + Y M+N Y H +VD+ +
Sbjct: 490 LEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGY---FSDRHVANSLVDMYAK 546
Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
G L A L + + D W ++ +H
Sbjct: 547 CGALLLAHMLFDD-IASKDLVSWTVMIAGYGMH 578
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 129/268 (48%), Gaps = 1/268 (0%)
Query: 44 EINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRK 103
+I+ T+ +L +C D L G G +D ++G+ L MY CG + +
Sbjct: 91 DIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASR 150
Query: 104 LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163
+FD+V + + WN +++ A++G + + L+++M S GV D+ TF V S + L +
Sbjct: 151 VFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRS 210
Query: 164 HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGG 223
G ++ I +GFG + N+L+ Y + + AR +FD M + V+SW +II G
Sbjct: 211 VHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIING 270
Query: 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP 283
Y +G E + +F +ML SGI D VSV + C+ + L G + + K
Sbjct: 271 YVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG-RAVHSIGVKACFSR 329
Query: 284 GPEHYTCMVDLLGRAGQLNEALELIESM 311
++D+ + G L+ A + M
Sbjct: 330 EDRFCNTLLDMYSKCGDLDSAKAVFREM 357
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 410 bits (1053), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/508 (41%), Positives = 311/508 (61%), Gaps = 6/508 (1%)
Query: 15 YNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
+N LI GY A SL+ +MR G VE ++ T L+ + LG H +
Sbjct: 88 WNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVV 147
Query: 74 VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
++ G V N L+ +Y CG V K+FD++PEK L+ WN++I+G+A+NG L
Sbjct: 148 IRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEAL 207
Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
LY EM S G+ PD T V +LS+CA +GA ++G V + G N +N L+++Y
Sbjct: 208 ALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLY 267
Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS-GIRPDGTAF 252
ARCG +++A+ +FD M K VSWT++I G ++G G+ A++LF M + G+ P F
Sbjct: 268 ARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITF 327
Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
V +L ACSH G+ +G EYF M+ +Y ++P EH+ CMVDLL RAGQ+ +A E I+SM
Sbjct: 328 VGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMP 387
Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
++P+ +W LLGAC +H + +LAE A ++++LEP ++G YVLLSN+Y+ + + +
Sbjct: 388 MQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQK 447
Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
+R M +KK PG+S VE+ RVH F++GD++H Q+ IY L ++ ++ +
Sbjct: 448 IRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQ 507
Query: 433 SDQ----KNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
EE N HSEK+AIAF +I+T + I V+KNLR+C DCHL IKLVSK
Sbjct: 508 ISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSK 567
Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
+ +R+ +VRD +RFHHFK+G CSC+DYW
Sbjct: 568 VYNREIVVRDRSRFHHFKNGSCSCQDYW 595
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 126/225 (56%), Gaps = 5/225 (2%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
V +N++I+G+ N EA++L+ +M +G++ + T++ LL C G L LG H
Sbjct: 188 VAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVY 247
Query: 73 CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
+K GL + N L+ +Y +CG V+ + LFD++ +K ++W ++I G A NG
Sbjct: 248 MIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEA 307
Query: 133 LELYREMKSL-GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--AL 189
+EL++ M+S G+ P +TFVG+L +C+H G G E ++++ + P + + +
Sbjct: 308 IELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREE-YKIEPRIEHFGCM 366
Query: 190 INMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVA 233
+++ AR G +KKA MP + VV W ++G +HG ++A
Sbjct: 367 VDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLA 411
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 409 bits (1050), Expect = e-113, Method: Compositional matrix adjust.
Identities = 214/530 (40%), Positives = 312/530 (58%), Gaps = 18/530 (3%)
Query: 4 ESIKSTHLTVCYNALISGYVLNSLVSEA---------VSLFGKMREQGVEINSVTMLCLL 54
+I THL L ++ NS++ V+ + +M V ++ T ++
Sbjct: 55 RAIAYTHLLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVI 114
Query: 55 PICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLI 114
C D L +G HC V G LD V L+T Y KCG ++ R++FD++PEK ++
Sbjct: 115 KSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIV 174
Query: 115 TWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
WN+++SG+ QNGLA ++++ +M+ G PD+ TFV +LS+CA GA S+G V Q I
Sbjct: 175 AWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYI 234
Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
+ G N L ALIN+Y+RCG++ KAR +FD M V +WTA+I YG HG+G+ AV
Sbjct: 235 ISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAV 294
Query: 235 QLFDEMLKS-GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVD 293
+LF++M G P+ FV+VLSAC+HAGL ++G + M Y L PG EH+ CMVD
Sbjct: 295 ELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVD 354
Query: 294 LLGRAGQLNEALELIESMLVEPDG---AVWGALLGACKIHKNVELAELAFGKVIKLEPMN 350
+LGRAG L+EA + I + A+W A+LGACK+H+N +L ++I LEP N
Sbjct: 355 MLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDN 414
Query: 351 TGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQT 410
G++V+LSNIY+ + D + +R M L+K GYS +E++ + ++F +GD +H +T
Sbjct: 415 PGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQET 474
Query: 411 VEIYRMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTE 466
EIYR L+ L + +E S+ Q EE HSEKLA+AFG++ T
Sbjct: 475 GEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTV-DVA 533
Query: 467 IVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
I ++KNLRIC DCH K +S + +RQ VRD RFHHF++G CSC DYW
Sbjct: 534 ITIVKNLRICEDCHSAFKYISIVSNRQITVRDKLRFHHFQNGSCSCLDYW 583
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 134/256 (52%), Gaps = 2/256 (0%)
Query: 88 LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
L+T+ ++ Y LF VP +N++I ++ L H + YR M S V P
Sbjct: 47 LITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPS 106
Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
TF V+ SCA L A +G V +GFG + ++ AL+ Y++CG+++ AR +FD
Sbjct: 107 NYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFD 166
Query: 208 GMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDK 267
MP K++V+W +++ G+ +G + A+Q+F +M +SG PD FVS+LSAC+ G
Sbjct: 167 RMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSL 226
Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
G + + GL + T +++L R G + +A E+ + M E + A W A++ A
Sbjct: 227 G-SWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKM-KETNVAAWTAMISAY 284
Query: 328 KIHKNVELAELAFGKV 343
H + A F K+
Sbjct: 285 GTHGYGQQAVELFNKM 300
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 402 bits (1034), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/510 (40%), Positives = 305/510 (59%), Gaps = 6/510 (1%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
V +NA+ISGY EA+ LF M + V + TM+ ++ C G + LG H
Sbjct: 232 VSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLW 291
Query: 73 CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
G + + N L+ +Y KCG ++ LF+++P K +I+WN +I GY L
Sbjct: 292 IDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEA 351
Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI--QANGFGSNPFLNNALI 190
L L++EM G P+ VT + +L +CAHLGA +G + I + G + L +LI
Sbjct: 352 LLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLI 411
Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
+MYA+CG+++ A +F+ + K++ SW A+I G+ +HG + + LF M K GI+PD
Sbjct: 412 DMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDI 471
Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
FV +LSACSH+G+ D G F M Y + P EHY CM+DLLG +G EA E+I
Sbjct: 472 TFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINM 531
Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
M +EPDG +W +LL ACK+H NVEL E +IK+EP N G YVLLSNIY+ A + +
Sbjct: 532 MEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEV 591
Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE---- 426
+ R ++ ++ +KK PG S +E+ VH F++GD+ H + EIY ML+++E L+++
Sbjct: 592 AKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFV 651
Query: 427 HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
D ++ + E HSEKLAIAFG+I+T PGT++ ++KNLR+C +CH KL+
Sbjct: 652 PDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLI 711
Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
SKI R+ I RD TRFHHF+ G CSC DYW
Sbjct: 712 SKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
Score = 185 bits (469), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 120/389 (30%), Positives = 195/389 (50%), Gaps = 36/389 (9%)
Query: 4 ESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYL 63
++I+ +L + +N + G+ L+S A+ L+ M G+ NS T +L C
Sbjct: 92 KTIQEPNLLI-WNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAF 150
Query: 64 WLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS-------------------------- 97
G H +K G DLD V L++MYV+ G
Sbjct: 151 KEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGY 210
Query: 98 -----VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFV 152
++ +KLFD++P K +++WNAMISGYA+ G LEL+++M V PD T V
Sbjct: 211 ASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMV 270
Query: 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRK 212
V+S+CA G+ +G +V I +GFGSN + NALI++Y++CG L+ A +F+ +P K
Sbjct: 271 TVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYK 330
Query: 213 TVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG-LEY 271
V+SW +IGGY + A+ LF EML+SG P+ +S+L AC+H G D G +
Sbjct: 331 DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIH 390
Query: 272 FYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHK 331
Y K G+ T ++D+ + G + A ++ S+L + W A++ +H
Sbjct: 391 VYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSIL-HKSLSSWNAMIFGFAMHG 449
Query: 332 NVELAELAFGKV--IKLEPMNTGYYVLLS 358
+ + F ++ I ++P + + LLS
Sbjct: 450 RADASFDLFSRMRKIGIQPDDITFVGLLS 478
Score = 120 bits (300), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 124/259 (47%), Gaps = 33/259 (12%)
Query: 98 VDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
+ Y +F + E L+ WN M G+A + L+LY M SLG+ P++ TF VL S
Sbjct: 84 LPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKS 143
Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
CA A G ++ + G + +++ +LI+MY + G L+ A +FD P + VVS+
Sbjct: 144 CAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSY 203
Query: 218 TAIIGGYGIHGHGEVAVQLFDE-------------------------------MLKSGIR 246
TA+I GY G+ E A +LFDE M+K+ +R
Sbjct: 204 TALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 263
Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
PD + V+V+SAC+ +G + G + + + +G + ++DL + G+L A
Sbjct: 264 PDESTMVTVVSACAQSGSIELGRQVHLWI-DDHGFGSNLKIVNALIDLYSKCGELETACG 322
Query: 307 LIESMLVEPDGAVWGALLG 325
L E + + D W L+G
Sbjct: 323 LFERLPYK-DVISWNTLIG 340
>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580
OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
Length = 882
Score = 399 bits (1025), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/512 (39%), Positives = 309/512 (60%), Gaps = 9/512 (1%)
Query: 12 TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
TV +N++ISGY+ + + EA+ LF M + + +T L L+ + L G H
Sbjct: 373 TVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHS 432
Query: 72 ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
+K G+ +D SV N L+ MY KCG V K+F + +TWN +IS + G
Sbjct: 433 NGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFAT 492
Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
L++ +M+ V PD TF+ L CA L A +G E+ + G+ S + NALI
Sbjct: 493 GLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIE 552
Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
MY++CG L+ + +F+ M R+ VV+WT +I YG++G GE A++ F +M KSGI PD
Sbjct: 553 MYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVV 612
Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
F++++ ACSH+GL D+GL F MK Y + P EHY C+VDLL R+ ++++A E I++M
Sbjct: 613 FIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAM 672
Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
++PD ++W ++L AC+ ++E AE ++I+L P + GY +L SN Y+ R D +
Sbjct: 673 PIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVS 732
Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
+R ++++ + K+PGYS++E+ VH+F GD + Q+ IY+ L+ L +L+ +
Sbjct: 733 LIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIP 792
Query: 432 RSDQKNSEEHLNDTEV-------HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIK 484
D + ++L + E HSE+LAIAFG++NT PGT + VMKNLR+CGDCH K
Sbjct: 793 --DPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTK 850
Query: 485 LVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
L+SKIV R+ +VRDA RFH FK G CSCKD W
Sbjct: 851 LISKIVGREILVRDANRFHLFKDGTCSCKDRW 882
Score = 129 bits (325), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 154/318 (48%), Gaps = 17/318 (5%)
Query: 15 YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
+N++I + N L EA+ +GK+RE V + T ++ C +G + +
Sbjct: 74 WNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQIL 133
Query: 75 KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
G + D VGN L+ MY + G + R++FD++P + L++WN++ISGY+ +G LE
Sbjct: 134 DMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALE 193
Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG------SNPFLNNA 188
+Y E+K+ + PD+ T VL + +L L V+Q +GF S +NN
Sbjct: 194 IYHELKNSWIVPDSFTVSSVLPAFGNL------LVVKQGQGLHGFALKSGVNSVVVVNNG 247
Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
L+ MY + AR +FD M + VS+ +I GY E +V++F E L +PD
Sbjct: 248 LVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQ-FKPD 306
Query: 249 GTAFVSVLSACSHAGLTDKGL-EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
SVL AC H L D L +Y Y K G ++D+ + G + A ++
Sbjct: 307 LLTVSSVLRACGH--LRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDV 364
Query: 308 IESMLVEPDGAVWGALLG 325
SM + D W +++
Sbjct: 365 FNSMECK-DTVSWNSIIS 381
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 107/191 (56%), Gaps = 3/191 (1%)
Query: 70 HCICVKFGLDL-DFSVGNCLMTMYVKCGSVDYGRKLFDQV-PEKGLITWNAMISGYAQNG 127
H + + GLD DF G L+ Y +F +V P K + WN++I +++NG
Sbjct: 27 HALVISLGLDSSDFFSGK-LIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFSKNG 85
Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
L LE Y +++ V PD TF V+ +CA L +G V +QI GF S+ F+ N
Sbjct: 86 LFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGN 145
Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
AL++MY+R G L +AR +FD MP + +VSW ++I GY HG+ E A++++ E+ S I P
Sbjct: 146 ALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVP 205
Query: 248 DGTAFVSVLSA 258
D SVL A
Sbjct: 206 DSFTVSSVLPA 216
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 161/330 (48%), Gaps = 11/330 (3%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
VFDE V +N+LISGY + EA+ ++ +++ + +S T+ +LP +
Sbjct: 163 VFDE--MPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNL 220
Query: 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
+ G H +K G++ V N L+ MY+K R++FD++ + +++N MI
Sbjct: 221 LVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMI 280
Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
GY + + + ++ E PD +T VL +C HL S+ + + GF
Sbjct: 281 CGYLKLEMVEESVRMFLENLD-QFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFV 339
Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
+ N LI++YA+CG++ AR +F+ M K VSW +II GY G A++LF M
Sbjct: 340 LESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMM 399
Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN---KYGLQPGPEHYTCMVDLLGR 297
+ + D ++ ++S + L D L++ G+ + K G+ ++D+ +
Sbjct: 400 MIMEEQADHITYLMLISVSTR--LAD--LKFGKGLHSNGIKSGICIDLSVSNALIDMYAK 455
Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGAC 327
G++ ++L++ SM D W ++ AC
Sbjct: 456 CGEVGDSLKIFSSMGT-GDTVTWNTVISAC 484
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 398 bits (1022), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/544 (36%), Positives = 328/544 (60%), Gaps = 43/544 (7%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
V +N++I+G+V +A+ LF KM + V+ + VTM+ +L C L G
Sbjct: 198 VSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSY 257
Query: 73 CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFD-------------------------- 106
+ ++++ ++ N ++ MY KCGS++ ++LFD
Sbjct: 258 IEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAA 317
Query: 107 -----QVPEKGLITWNAMISGYAQNGLATHVLELYREMK-SLGVCPDAVTFVGVLSSCAH 160
+P+K ++ WNA+IS Y QNG L ++ E++ + + +T V LS+CA
Sbjct: 318 REVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQ 377
Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
+GA +G + I+ +G N + +ALI+MY++CG+L+K+R +F+ + ++ V W+A+
Sbjct: 378 VGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAM 437
Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
IGG +HG G AV +F +M ++ ++P+G F +V ACSH GL D+ F+ M++ YG
Sbjct: 438 IGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYG 497
Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
+ P +HY C+VD+LGR+G L +A++ IE+M + P +VWGALLGACKIH N+ LAE+A
Sbjct: 498 IVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMAC 557
Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400
++++LEP N G +VLLSNIY++ + + +R MR LKK+PG S +E+ G +H F
Sbjct: 558 TRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEF 617
Query: 401 MVGDRNHHQTVEIY----RMLDKLENLVQEHDGTKR----SDQKNSEEHLNDTEVHSEKL 452
+ GD H + ++Y +++KL++ E + ++ +++ E+ LN +HSEKL
Sbjct: 618 LSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLN---LHSEKL 674
Query: 453 AIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSC 512
AI +G+I+T I V+KNLR+CGDCH KL+S++ DR+ IVRD RFHHF++G CSC
Sbjct: 675 AICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSC 734
Query: 513 KDYW 516
D+W
Sbjct: 735 NDFW 738
Score = 152 bits (385), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 103/363 (28%), Positives = 170/363 (46%), Gaps = 37/363 (10%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVD 59
VFDE K + +N LI Y ++ F M E N T L+ +
Sbjct: 86 VFDEIPKPN--SFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAE 143
Query: 60 PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
L LG H + VK + D V N L+ Y CG +D K+F + EK +++WN+M
Sbjct: 144 VSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSM 203
Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
I+G+ Q G LEL+++M+S V VT VGVLS+CA + G +V I+ N
Sbjct: 204 INGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRV 263
Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDG------------------------------- 208
N L NA+++MY +CG+++ A+ +FD
Sbjct: 264 NVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNS 323
Query: 209 MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM-LKSGIRPDGTAFVSVLSACSHAGLTDK 267
MP+K +V+W A+I Y +G A+ +F E+ L+ ++ + VS LSAC+ G +
Sbjct: 324 MPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALEL 383
Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
G + + K+G++ + ++ + + G L ++ E+ S + + D VW A++G
Sbjct: 384 G-RWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNS-VEKRDVFVWSAMIGGL 441
Query: 328 KIH 330
+H
Sbjct: 442 AMH 444
Score = 108 bits (270), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 119/243 (48%), Gaps = 5/243 (2%)
Query: 96 GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC-PDAVTFVGV 154
S++Y RK+FD++P+ WN +I YA + + +M S C P+ TF +
Sbjct: 78 ASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFL 137
Query: 155 LSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTV 214
+ + A + + S+G + + GS+ F+ N+LI+ Y CG+L A +F + K V
Sbjct: 138 IKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDV 197
Query: 215 VSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEY-FY 273
VSW ++I G+ G + A++LF +M ++ V VLSAC+ + G + Y
Sbjct: 198 VSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSY 257
Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNV 333
+N+ + + M+D+ + G + +A L ++M E D W +L I ++
Sbjct: 258 IEENRVNVNLTLAN--AMLDMYTKCGSIEDAKRLFDAM-EEKDNVTWTTMLDGYAISEDY 314
Query: 334 ELA 336
E A
Sbjct: 315 EAA 317
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 398 bits (1022), Expect = e-110, Method: Compositional matrix adjust.
Identities = 207/540 (38%), Positives = 306/540 (56%), Gaps = 37/540 (6%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
V YNA+ISGYV EA+ + +M G+E++ T ++ C G L LG H
Sbjct: 252 VAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAY 311
Query: 73 CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGY--------- 123
++ D F N L+++Y KCG D R +F+++P K L++WNA++SGY
Sbjct: 312 VLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEA 370
Query: 124 ----------------------AQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHL 161
A+NG L+L+ MK G P F G + SCA L
Sbjct: 371 KLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVL 430
Query: 162 GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
GA+ G + Q+ GF S+ NALI MYA+CG +++AR +F MP VSW A+I
Sbjct: 431 GAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALI 490
Query: 222 GGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281
G HGHG AV +++EMLK GIRPD ++VL+ACSHAGL D+G +YF M+ Y +
Sbjct: 491 AALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRI 550
Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG 341
PG +HY ++DLL R+G+ ++A +IES+ +P +W ALL C++H N+EL +A
Sbjct: 551 PPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAAD 610
Query: 342 KVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFM 401
K+ L P + G Y+LLSN+++ + + RVR +MR+R +KK+ S++E++ +VH F+
Sbjct: 611 KLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFL 670
Query: 402 VGDRNHHQTVEIYRMLDKLENLVQE----HDGTKRSDQKNSEEHLNDT-EVHSEKLAIAF 456
V D +H + +Y L L ++ D + S+ H D HSEK+A+AF
Sbjct: 671 VDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAF 730
Query: 457 GIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
G++ PGT I + KNLR CGDCH F + +S +V R I+RD RFHHF++G CSC ++W
Sbjct: 731 GLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 108/400 (27%), Positives = 171/400 (42%), Gaps = 75/400 (18%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVT---MLCLLPIC 57
VF+++ TV YNA+I+G+ N+ A++LF KM+ +G + ++ T +L L +
Sbjct: 102 VFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALV 161
Query: 58 VDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGS----VDYGRKLFDQVPEKG- 112
D + H +K G SV N L+++Y KC S + RK+FD++ EK
Sbjct: 162 ADDEKQCVQF--HAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDE 219
Query: 113 -------------------------------LITWNAMISGYAQNGLATHVLELYREMKS 141
L+ +NAMISGY G LE+ R M S
Sbjct: 220 RSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVS 279
Query: 142 LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKK 201
G+ D T+ V+ +CA G +G +V + S F +N+L+++Y +CG +
Sbjct: 280 SGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHF-DNSLVSLYYKCGKFDE 338
Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGH-------------------------------G 230
ARAIF+ MP K +VSW A++ GY GH G
Sbjct: 339 ARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFG 398
Query: 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC 290
E ++LF M + G P AF + +C+ G G +Y + K G
Sbjct: 399 EEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQY-HAQLLKIGFDSSLSAGNA 457
Query: 291 MVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
++ + + G + EA ++ +M D W AL+ A H
Sbjct: 458 LITMYAKCGVVEEARQVFRTMPC-LDSVSWNALIAALGQH 496
Score = 89.0 bits (219), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 89/389 (22%), Positives = 158/389 (40%), Gaps = 79/389 (20%)
Query: 63 LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE------------ 110
L L H + FG + N L+ +Y K ++Y R+LFD++ E
Sbjct: 30 LQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSG 89
Query: 111 ---------------------KGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
+ + +NAMI+G++ N + L+ +MK G PD
Sbjct: 90 YCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNF 149
Query: 150 TFVGVLSSCAHLGAHSVG-LEVEQQIQANGFGSNPFLNNALINMYARCGN----LKKARA 204
TF VL+ A + ++ +G G ++NAL+++Y++C + L AR
Sbjct: 150 TFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARK 209
Query: 205 IFDGMPRKTVVSWT--------------------------------AIIGGYGIHGHGEV 232
+FD + K SWT A+I GY G +
Sbjct: 210 VFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQE 269
Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHY-TC 290
A+++ M+ SGI D + SV+ AC+ AGL G + + Y ++ + H+
Sbjct: 270 ALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRR----EDFSFHFDNS 325
Query: 291 MVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMN 350
+V L + G+ +EA + E M + D W ALL ++ A+L F ++ + ++
Sbjct: 326 LVSLYYKCGKFDEARAIFEKMPAK-DLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILS 384
Query: 351 TGYYVLLSNIYSEARNLDGIMRVRMMMRE 379
+ +++S + +G+ M RE
Sbjct: 385 --WMIMISGLAENGFGEEGLKLFSCMKRE 411
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 397 bits (1021), Expect = e-110, Method: Compositional matrix adjust.
Identities = 213/526 (40%), Positives = 310/526 (58%), Gaps = 12/526 (2%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
VFD++ K T +NAL L E + L+ KM GVE + T +L CV
Sbjct: 134 VFDKTRKRT--IYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVAS 191
Query: 61 ----GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITW 116
+L G H + G + L+ MY + G VDY +F +P + +++W
Sbjct: 192 ECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSW 251
Query: 117 NAMISGYAQNGLATHVLELYREM--KSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQI 174
+AMI+ YA+NG A L +REM ++ P++VT V VL +CA L A G + I
Sbjct: 252 SAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYI 311
Query: 175 QANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAV 234
G S + +AL+ MY RCG L+ + +FD M + VVSW ++I YG+HG+G+ A+
Sbjct: 312 LRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAI 371
Query: 235 QLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDL 294
Q+F+EML +G P FVSVL ACSH GL ++G F M +G++P EHY CMVDL
Sbjct: 372 QIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDL 431
Query: 295 LGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYY 354
LGRA +L+EA ++++ M EP VWG+LLG+C+IH NVELAE A ++ LEP N G Y
Sbjct: 432 LGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNY 491
Query: 355 VLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIY 414
VLL++IY+EA+ D + RV+ ++ R L+K PG ++E++ +++ F+ D + +I+
Sbjct: 492 VLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIH 551
Query: 415 RMLDKLENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVM 470
L KL ++E ++ + +EE HSEKLA+AFG+INTS G I +
Sbjct: 552 AFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRIT 611
Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
KNLR+C DCHLF K +SK ++++ +VRD RFH FK+G CSC DYW
Sbjct: 612 KNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657
Score = 129 bits (323), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 148/324 (45%), Gaps = 18/324 (5%)
Query: 16 NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVK 75
N LI + +A+ + + + + +LC C L + H +
Sbjct: 50 NQLIQSLCKEGKLKQAIRVLSQESSPSQQTYELLILC----CGHRSSLSDALRVHRHILD 105
Query: 76 FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLEL 135
G D D + L+ MY GSVDY RK+FD+ ++ + WNA+ G VL L
Sbjct: 106 NGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGL 165
Query: 136 YREMKSLGVCPDAVTFVGVLSSCA-------HLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
Y +M +GV D T+ VL +C HL G E+ + G+ S+ ++
Sbjct: 166 YWKMNRIGVESDRFTYTYVLKACVASECTVNHLMK---GKEIHAHLTRRGYSSHVYIMTT 222
Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK--SGIR 246
L++MYAR G + A +F GMP + VVSW+A+I Y +G A++ F EM++
Sbjct: 223 LVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSS 282
Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
P+ VSVL AC+ ++G + +G + GL + +V + GR G+L
Sbjct: 283 PNSVTMVSVLQACASLAALEQG-KLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQR 341
Query: 307 LIESMLVEPDGAVWGALLGACKIH 330
+ + M + D W +L+ + +H
Sbjct: 342 VFDRMH-DRDVVSWNSLISSYGVH 364
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 109/271 (40%), Gaps = 43/271 (15%)
Query: 114 ITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQ 173
I+ N +I + G + + + S P T+ ++ C H + S L V +
Sbjct: 47 ISNNQLIQSLCKEGKLKQAIRVLSQESS----PSQQTYELLILCCGHRSSLSDALRVHRH 102
Query: 174 IQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVA 233
I NG +PFL LI MY+ G++ AR +FD ++T+ W A+ + GHGE
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162
Query: 234 VQLFDEMLKSGIRPDGTAFVSVLSACS---------------HAGLTDKG-------LEY 271
+ L+ +M + G+ D + VL AC HA LT +G +
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTT 222
Query: 272 FYGMKNKYGLQPGPEH------------YTCMVDLLGRAGQLNEALELIESMLVE----- 314
M ++G + ++ M+ + G+ EAL M+ E
Sbjct: 223 LVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSS 282
Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIK 345
P+ ++L AC +E +L G +++
Sbjct: 283 PNSVTMVSVLQACASLAALEQGKLIHGYILR 313
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 397 bits (1021), Expect = e-110, Method: Compositional matrix adjust.
Identities = 225/596 (37%), Positives = 320/596 (53%), Gaps = 85/596 (14%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
VFDE + + + N +I YV N E V +FG M V + T C+L C
Sbjct: 96 VFDEIPERNVIII--NVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCS 153
Query: 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
G + +G H K GL VGN L++MY KCG + R + D++ + +++WN+++
Sbjct: 154 GTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLV 213
Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSV-------------- 166
GYAQN LE+ REM+S+ + DA T +L + ++ +V
Sbjct: 214 VGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKS 273
Query: 167 -------------------GLEVEQQIQANGFG--------------------------- 180
+E+ +++A+GF
Sbjct: 274 LVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHG 333
Query: 181 --------SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
N L NALI+MYA+CG L+KAR +F+ M + VVSWTA+I YG G G
Sbjct: 334 YIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCD 393
Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
AV LF ++ SG+ PD AFV+ L+ACSHAGL ++G F M + Y + P EH CMV
Sbjct: 394 AVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMV 453
Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTG 352
DLLGRAG++ EA I+ M +EP+ VWGALLGAC++H + ++ LA K+ +L P +G
Sbjct: 454 DLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSG 513
Query: 353 YYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVE 412
YYVLLSNIY++A + + +R +M+ + LKK+PG S VE+ +H F+VGDR+H Q+ E
Sbjct: 514 YYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDE 573
Query: 413 IYRMLDKLENLVQE-------HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGT 465
IYR LD L ++E ++++ E HL VHSEKLAI F ++NT
Sbjct: 574 IYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHL---AVHSEKLAIVFALMNTKEEE 630
Query: 466 E-----IVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
E I + KNLRICGDCH+ KL+S+I R+ I+RD RFH F+ G CSC DYW
Sbjct: 631 EDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686
Score = 119 bits (299), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 126/265 (47%), Gaps = 11/265 (4%)
Query: 83 SVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL 142
S+G LM Y V RK+FD++PE+ +I N MI Y NG ++++ M
Sbjct: 75 SLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGC 134
Query: 143 GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKA 202
V PD TF VL +C+ G +G ++ G S F+ N L++MY +CG L +A
Sbjct: 135 NVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEA 194
Query: 203 RAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHA 262
R + D M R+ VVSW +++ GY + + A+++ EM I D S+L A S+
Sbjct: 195 RLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNT 254
Query: 263 GLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV---EPDGAV 319
T + + Y M K G + + M+ + + EA+EL M EPD
Sbjct: 255 --TTENVMYVKDMFFKMG-KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVS 311
Query: 320 WGALLGACKIHKNVELAELAFGKVI 344
++L AC + + L+ GK I
Sbjct: 312 ITSVLPACG-----DTSALSLGKKI 331
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 8/158 (5%)
Query: 170 VEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGY---GI 226
V +I N L L+ YA ++ AR +FD +P + V+ +I Y G
Sbjct: 61 VHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGF 120
Query: 227 HGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPE 286
+G G V++F M +RPD F VL ACS +G G + +G K GL
Sbjct: 121 YGEG---VKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRK-IHGSATKVGLSSTLF 176
Query: 287 HYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
+V + G+ G L+EA +++ M D W +L+
Sbjct: 177 VGNGLVSMYGKCGFLSEARLVLDEM-SRRDVVSWNSLV 213
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 396 bits (1017), Expect = e-109, Method: Compositional matrix adjust.
Identities = 209/548 (38%), Positives = 315/548 (57%), Gaps = 37/548 (6%)
Query: 5 SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLW 64
I++ +L V +N LI + + S+A + +M + + +++T L+ + +
Sbjct: 76 QIQNPNLFV-FNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVL 134
Query: 65 LGMCCHCICVKFGLDLDFSVGNCLMTMYV------------------------------- 93
+G H V+FG D V N L+ MY
Sbjct: 135 VGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYC 194
Query: 94 KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVG 153
KCG V+ R++FD++P + L TW+ MI+GYA+N ++L+ MK GV + V
Sbjct: 195 KCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVS 254
Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
V+SSCAHLGA G + + + N L AL++M+ RCG+++KA +F+G+P
Sbjct: 255 VISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETD 314
Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
+SW++II G +HGH A+ F +M+ G P F +VLSACSH GL +KGLE +
Sbjct: 315 SLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYE 374
Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNV 333
MK +G++P EHY C+VD+LGRAG+L EA I M V+P+ + GALLGACKI+KN
Sbjct: 375 NMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNT 434
Query: 334 ELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVEL 393
E+AE +IK++P ++GYYVLLSNIY+ A D I +R MM+E+ +KK PG+S +E+
Sbjct: 435 EVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEI 494
Query: 394 KGRVHLFMVGDRNHHQTVEIYR-----MLDKLENLVQEHDGTKRSDQKNSEEHLNDTEVH 448
G+++ F +GD H + R +L K+ + + + + EE + +H
Sbjct: 495 DGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMH 554
Query: 449 SEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSG 508
SEKLAIA+G++ T PGT I ++KNLR+C DCH KL+S++ R+ IVRD RFHHF++G
Sbjct: 555 SEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNG 614
Query: 509 FCSCKDYW 516
CSC+DYW
Sbjct: 615 VCSCRDYW 622
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 131/295 (44%), Gaps = 41/295 (13%)
Query: 100 YGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCA 159
Y +F Q+ L +N +I ++ + Y +M + PD +TF ++ + +
Sbjct: 69 YAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASS 128
Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA------------------------- 194
+ VG + QI GF ++ ++ N+L++MYA
Sbjct: 129 EMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTS 188
Query: 195 ------RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
+CG ++ AR +FD MP + + +W+ +I GY + E A+ LF+ M + G+ +
Sbjct: 189 MVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVAN 248
Query: 249 GTAFVSVLSACSHAG---LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
T VSV+S+C+H G ++ EY L G T +VD+ R G + +A+
Sbjct: 249 ETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILG----TALVDMFWRCGDIEKAI 304
Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLE--PMNTGYYVLLS 358
+ E L E D W +++ +H + A F ++I L P + + +LS
Sbjct: 305 HVFEG-LPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLS 358
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis
thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 394 bits (1011), Expect = e-108, Method: Compositional matrix adjust.
Identities = 198/508 (38%), Positives = 287/508 (56%), Gaps = 4/508 (0%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
V + +I+GY + +A++ F +M ++G+ + V + + C L G H
Sbjct: 557 VSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQ 616
Query: 73 CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
G D N L+T+Y +CG ++ F+Q I WNA++SG+ Q+G
Sbjct: 617 ACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEA 676
Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
L ++ M G+ + TF + + + G +V I G+ S + NALI+M
Sbjct: 677 LRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISM 736
Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
YA+CG++ A F + K VSW AII Y HG G A+ FD+M+ S +RP+
Sbjct: 737 YAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTL 796
Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
V VLSACSH GL DKG+ YF M ++YGL P PEHY C+VD+L RAG L+ A E I+ M
Sbjct: 797 VGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMP 856
Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
++PD VW LL AC +HKN+E+ E A +++LEP ++ YVLLSN+Y+ ++ D
Sbjct: 857 IKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDL 916
Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQE----HD 428
R M+E+ +KK+PG S++E+K +H F VGD+NH EI+ L E D
Sbjct: 917 TRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQD 976
Query: 429 GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
++ E+ +HSEKLAI+FG+++ I VMKNLR+C DCH +IK VSK
Sbjct: 977 CFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSK 1036
Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
+ +R+ IVRDA RFHHF+ G CSCKDYW
Sbjct: 1037 VSNREIIVRDAYRFHHFEGGACSCKDYW 1064
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/329 (27%), Positives = 144/329 (43%), Gaps = 2/329 (0%)
Query: 12 TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
V YN LI+G +A+ LF +M G+E +S T+ L+ C G L+ G H
Sbjct: 354 AVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHA 413
Query: 72 ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
K G + + L+ +Y KC ++ F + + ++ WN M+ Y +
Sbjct: 414 YTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRN 473
Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
++R+M+ + P+ T+ +L +C LG +G ++ QI F N ++ + LI+
Sbjct: 474 SFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLID 533
Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
MYA+ G L A I K VVSWT +I GY + + A+ F +ML GIR D
Sbjct: 534 MYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVG 593
Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
+ +SAC+ +G + + G +V L R G++ E+ E
Sbjct: 594 LTNAVSACAGLQALKEG-QQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQT 652
Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAF 340
D W AL+ + N E A F
Sbjct: 653 EA-GDNIAWNALVSGFQQSGNNEEALRVF 680
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 94/328 (28%), Positives = 155/328 (47%), Gaps = 7/328 (2%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
VFDE + T T +N +I +L+ E LF +M + V N T +L C
Sbjct: 142 VFDEMPERTIFT--WNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC-RG 198
Query: 61 GYLWLGMC--CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNA 118
G + + H + GL V N L+ +Y + G VD R++FD + K +W A
Sbjct: 199 GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVA 258
Query: 119 MISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANG 178
MISG ++N + L+ +M LG+ P F VLS+C + + +G ++ + G
Sbjct: 259 MISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 318
Query: 179 FGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFD 238
F S+ ++ NAL+++Y GNL A IF M ++ V++ +I G G+GE A++LF
Sbjct: 319 FSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK 378
Query: 239 EMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
M G+ PD S++ ACS G +G + + K G + +++L +
Sbjct: 379 RMHLDGLEPDSNTLASLVVACSADGTLFRG-QQLHAYTTKLGFASNNKIEGALLNLYAKC 437
Query: 299 GQLNEALELIESMLVEPDGAVWGALLGA 326
+ AL+ VE + +W +L A
Sbjct: 438 ADIETALDYFLETEVE-NVVLWNVMLVA 464
Score = 132 bits (333), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 148/321 (46%), Gaps = 8/321 (2%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
V +N ++ Y L + + +F +M+ + + N T +L C+ G L LG H
Sbjct: 456 VLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQ 515
Query: 73 CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
+K L+ V + L+ MY K G +D + + K +++W MI+GY Q
Sbjct: 516 IIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKA 575
Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
L +R+M G+ D V +S+CA L A G ++ Q +GF S+ NAL+ +
Sbjct: 576 LTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTL 635
Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
Y+RCG ++++ F+ ++W A++ G+ G+ E A+++F M + GI + F
Sbjct: 636 YSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTF 695
Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
S + A S +G + + + K G E ++ + + G +++A E
Sbjct: 696 GSAVKAASETANMKQGKQ-VHAVITKTGYDSETEVCNALISMYAKCGSISDA----EKQF 750
Query: 313 VE---PDGAVWGALLGACKIH 330
+E + W A++ A H
Sbjct: 751 LEVSTKNEVSWNAIINAYSKH 771
Score = 122 bits (307), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 104/324 (32%), Positives = 150/324 (46%), Gaps = 18/324 (5%)
Query: 12 TVCYNALISGYVLNSLVSEAVSLFGK----MREQGVEINSVTMLCLLPICVDP-GYLWLG 66
T+C S ++ +SE S K + +G+ N T+ LL C+ G L G
Sbjct: 45 TLCGTRRASFAAISVYISEDESFQEKRIDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEG 104
Query: 67 MCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQN 126
H +K GLD + + L Y+ G + K+FD++PE+ + TWN MI A
Sbjct: 105 RKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASR 164
Query: 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA----NGFGSN 182
L V L+ M S V P+ TF GVL +C SV +V +QI A G +
Sbjct: 165 NLIGEVFGLFVRMVSENVTPNEGTFSGVLEACR---GGSVAFDVVEQIHARILYQGLRDS 221
Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
+ N LI++Y+R G + AR +FDG+ K SW A+I G + A++LF +M
Sbjct: 222 TVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYV 281
Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC--MVDLLGRAGQ 300
GI P AF SVLSAC + G E +G+ K G + Y C +V L G
Sbjct: 282 LGIMPTPYAFSSVLSACKKIESLEIG-EQLHGLVLKLGF--SSDTYVCNALVSLYFHLGN 338
Query: 301 LNEALELIESMLVEPDGAVWGALL 324
L A E I S + + D + L+
Sbjct: 339 LISA-EHIFSNMSQRDAVTYNTLI 361
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 137/292 (46%), Gaps = 1/292 (0%)
Query: 17 ALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKF 76
A+ISG N +EA+ LF M G+ +L C L +G H + +K
Sbjct: 258 AMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKL 317
Query: 77 GLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELY 136
G D V N L+++Y G++ +F + ++ +T+N +I+G +Q G +EL+
Sbjct: 318 GFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELF 377
Query: 137 REMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARC 196
+ M G+ PD+ T ++ +C+ G G ++ GF SN + AL+N+YA+C
Sbjct: 378 KRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKC 437
Query: 197 GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVL 256
+++ A F + VV W ++ YG+ + ++F +M I P+ + S+L
Sbjct: 438 ADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSIL 497
Query: 257 SACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI 308
C G + G E + K Q + ++D+ + G+L+ A +++
Sbjct: 498 KTCIRLGDLELG-EQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL 548
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 4/189 (2%)
Query: 139 MKSLGVCPDAVTFVGVLSSCAHL-GAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG 197
+++ G+ P+ T +L C G+ G ++ QI G SN L+ L + Y G
Sbjct: 75 VENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKG 134
Query: 198 NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGH-GEVAVQLFDEMLKSGIRPDGTAFVSVL 256
+L A +FD MP +T+ +W +I GEV LF M+ + P+ F VL
Sbjct: 135 DLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEV-FGLFVRMVSENVTPNEGTFSGVL 193
Query: 257 SACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPD 316
AC + +E + GL+ ++DL R G ++ A + + + ++ D
Sbjct: 194 EACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLK-D 252
Query: 317 GAVWGALLG 325
+ W A++
Sbjct: 253 HSSWVAMIS 261
Score = 41.2 bits (95), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 8 STHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
ST V +NA+I+ Y + SEA+ F +M V N VT++ +L C G + G+
Sbjct: 754 STKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGI 813
Query: 68 C-CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEK-GLITWNAMISG 122
+ ++GL C++ M + G + ++ ++P K + W ++S
Sbjct: 814 AYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSA 870
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust.
Identities = 212/545 (38%), Positives = 315/545 (57%), Gaps = 47/545 (8%)
Query: 15 YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
+ A+I GY + EA++++G MR++ + S T LL C L LG H
Sbjct: 117 WTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTF 176
Query: 75 KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE------------------------ 110
+ VGN ++ MYVKC S+D RK+FD++PE
Sbjct: 177 RLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAE 236
Query: 111 -------KGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163
K ++ W AM++G+AQN LE + M+ G+ D VT G +S+CA LGA
Sbjct: 237 LFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGA 296
Query: 164 HSVGLEVEQQIQANGFGSNP--FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAII 221
Q Q +G+ + + +ALI+MY++CGN+++A +F M K V +++++I
Sbjct: 297 SKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMI 356
Query: 222 GGYGIHGHGEVAVQLFDEML-KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
G HG + A+ LF M+ ++ I+P+ FV L ACSH+GL D+G + F M +G
Sbjct: 357 LGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFG 416
Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
+QP +HYTCMVDLLGR G+L EALELI++M VEP G VWGALLGAC+IH N E+AE+A
Sbjct: 417 VQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAA 476
Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSY-VELKGRVHL 399
+ +LEP G Y+LLSN+Y+ A + G++RVR +++E+ LKK P S+ V+ G++H
Sbjct: 477 EHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHK 536
Query: 400 FMVGDRNHHQTVEIYRMLDKLENLV--------QEHDGTKRSDQKNSEEHLNDTEVHSEK 451
F G+ NH + +I DKLE LV Q + D ++ + L + H+EK
Sbjct: 537 FFPGNLNHPMSNKIQ---DKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQ-HTEK 592
Query: 452 LAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCS 511
LA+AF ++ T+ + I +MKNLR+C DCH F++L S++ + I+RD RFHHF+SG CS
Sbjct: 593 LALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCS 652
Query: 512 CKDYW 516
C D+W
Sbjct: 653 CGDFW 657
Score = 99.0 bits (245), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 123/279 (44%), Gaps = 40/279 (14%)
Query: 70 HCICVKFGLDLDFSVGNCLMTMYVKCG-SVD-YGRKLFDQVPEKGLITWNAMISGYAQNG 127
H ++ GLD + L+ K G +D Y R++ + V + W A+I GYA G
Sbjct: 69 HGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAVIRGYAIEG 128
Query: 128 LATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVE-QQIQANGFGSNPFLN 186
+ +Y M+ + P + TF +L +C + ++G + Q + GF ++
Sbjct: 129 KFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGF-CFVYVG 187
Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL---------- 236
N +I+MY +C ++ AR +FD MP + V+SWT +I Y G+ E A +L
Sbjct: 188 NTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMV 247
Query: 237 ---------------------FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
FD M KSGIR D +SAC+ G + K + +
Sbjct: 248 AWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGAS-KYADRAVQI 306
Query: 276 KNKYGLQPGPEHY---TCMVDLLGRAGQLNEALELIESM 311
K G P +H + ++D+ + G + EA+ + SM
Sbjct: 307 AQKSGYSPS-DHVVIGSALIDMYSKCGNVEEAVNVFMSM 344
Score = 40.0 bits (92), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 6/141 (4%)
Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261
AR + + + + WTA+I GY I G + A+ ++ M K I P F ++L AC
Sbjct: 102 ARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGT 161
Query: 262 AGLTDKGLEYFYGMKNKYGLQPGPEHY--TCMVDLLGRAGQLNEALELIESMLVEPDGAV 319
+ G ++ + L+ Y M+D+ + ++ A ++ + M E D
Sbjct: 162 MKDLNLGRQFH---AQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEM-PERDVIS 217
Query: 320 WGALLGACKIHKNVELAELAF 340
W L+ A N+E A F
Sbjct: 218 WTELIAAYARVGNMECAAELF 238
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust.
Identities = 201/508 (39%), Positives = 295/508 (58%), Gaps = 5/508 (0%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
V + LISGY + +A+ F +M G N T+ ++ G H
Sbjct: 127 VTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGF 186
Query: 73 CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
CVK G D + VG+ L+ +Y + G +D + +FD + + ++WNA+I+G+A+
Sbjct: 187 CVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKA 246
Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
LEL++ M G P ++ + +C+ G G V + +G F N L++M
Sbjct: 247 LELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDM 306
Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
YA+ G++ AR IFD + ++ VVSW +++ Y HG G+ AV F+EM + GIRP+ +F
Sbjct: 307 YAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISF 366
Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
+SVL+ACSH+GL D+G Y+ MK K G+ P HY +VDLLGRAG LN AL IE M
Sbjct: 367 LSVLTACSHSGLLDEGWHYYELMK-KDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMP 425
Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
+EP A+W ALL AC++HKN EL A V +L+P + G +V+L NIY+ + R
Sbjct: 426 IEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAAR 485
Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYR----MLDKLENLVQEHD 428
VR M+E +KK+P S+VE++ +H+F+ D H Q EI R +L K++ L D
Sbjct: 486 VRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPD 545
Query: 429 GTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
+ + +E + + HSEK+A+AF ++NT PG+ I + KN+R+CGDCH IKL SK
Sbjct: 546 TSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASK 605
Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
+V R+ IVRD RFHHFK G CSCKDYW
Sbjct: 606 VVGREIIVRDTNRFHHFKDGNCSCKDYW 633
Score = 142 bits (358), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 140/278 (50%), Gaps = 2/278 (0%)
Query: 53 LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
LL C L G H ++ D +GN L+ MY KCGS++ RK+F+++P++
Sbjct: 66 LLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRD 125
Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
+TW +ISGY+Q+ L + +M G P+ T V+ + A G ++
Sbjct: 126 FVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHG 185
Query: 173 QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV 232
GF SN + +AL+++Y R G + A+ +FD + + VSW A+I G+ E
Sbjct: 186 FCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEK 245
Query: 233 AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMV 292
A++LF ML+ G RP ++ S+ ACS G ++G ++ + K G + ++
Sbjct: 246 ALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQG-KWVHAYMIKSGEKLVAFAGNTLL 304
Query: 293 DLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
D+ ++G +++A ++ + L + D W +LL A H
Sbjct: 305 DMYAKSGSIHDARKIFDR-LAKRDVVSWNSLLTAYAQH 341
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/509 (38%), Positives = 292/509 (57%), Gaps = 5/509 (0%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
V YN +IS Y ++ F +M+ G + + +L I + L +G HC
Sbjct: 317 VSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQ 376
Query: 73 CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
+ D VGN L+ MY KC + +F +P++ ++W A+ISGY Q GL
Sbjct: 377 ALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAG 436
Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
L+L+ +M+ + D TF VL + A + +G ++ I +G N F + L++M
Sbjct: 437 LKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDM 496
Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
YA+CG++K A +F+ MP + VSW A+I + +G GE A+ F +M++SG++PD +
Sbjct: 497 YAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSI 556
Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
+ VL+ACSH G ++G EYF M YG+ P +HY CM+DLLGR G+ EA +L++ M
Sbjct: 557 LGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMP 616
Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPM-NTGYYVLLSNIYSEARNLDGIM 371
EPD +W ++L AC+IHKN LAE A K+ +E + + YV +SNIY+ A + +
Sbjct: 617 FEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVR 676
Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEH---- 427
V+ MRER +KK P YS+VE+ ++H+F D+ H EI R +++L ++
Sbjct: 677 DVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKP 736
Query: 428 DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
D + + + + + HSE+LA+AF +I+T G IVVMKNLR C DCH IKL+S
Sbjct: 737 DTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLIS 796
Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
KIV R+ VRD +RFHHF G CSC DYW
Sbjct: 797 KIVKREITVRDTSRFHHFSEGVCSCGDYW 825
Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 179/350 (51%), Gaps = 26/350 (7%)
Query: 12 TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
+V +N LI+GY + L +E++ LF KMR+ G + + T +L V LG H
Sbjct: 215 SVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHA 274
Query: 72 ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
+ V G D SVGN ++ Y K V R LFD++PE +++N +IS Y+Q
Sbjct: 275 LSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEA 334
Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
L +REM+ +G F +LS A+L + +G ++ Q S + N+L++
Sbjct: 335 SLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVD 394
Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGY---GIHGHGEVAVQLFDEMLKSGIRPD 248
MYA+C ++A IF +P++T VSWTA+I GY G+HG G ++LF +M S +R D
Sbjct: 395 MYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAG---LKLFTKMRGSNLRAD 451
Query: 249 GTAFVSVLSACSHAG--LTDKGLEYFY----GMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
+ F +VL A + L K L F ++N + + +VD+ + G +
Sbjct: 452 QSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFS-------GSGLVDMYAKCGSIK 504
Query: 303 EALELIESMLVEPD--GAVWGALLGACKIHKNVELAELAFGKVIK--LEP 348
+A+++ E M PD W AL+ A + + E A AF K+I+ L+P
Sbjct: 505 DAVQVFEEM---PDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQP 551
Score = 122 bits (306), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 140/279 (50%), Gaps = 5/279 (1%)
Query: 12 TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
TV + ALISGYV L + LF KMR + + T +L L LG H
Sbjct: 417 TVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHA 476
Query: 72 ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
++ G + G+ L+ MY KCGS+ ++F+++P++ ++WNA+IS +A NG
Sbjct: 477 FIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEA 536
Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--AL 189
+ + +M G+ PD+V+ +GVL++C+H G G E Q + + +G P + +
Sbjct: 537 AIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAM-SPIYGITPKKKHYACM 595
Query: 190 INMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
+++ R G +A + D MP + W++++ IH + +A + +++ D
Sbjct: 596 LDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRD 655
Query: 249 GTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEH 287
A+VS+ + + AG +K + M+ + G++ P +
Sbjct: 656 AAAYVSMSNIYAAAGEWEKVRDVKKAMRER-GIKKVPAY 693
Score = 115 bits (288), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 117/249 (46%), Gaps = 4/249 (1%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKM-REQGVEI-NSVTMLCLLPICVDPGYLWLGMCCH 70
V + L+ Y NS EA LF +M R + + VT LLP C D H
Sbjct: 111 VTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVH 170
Query: 71 CICVKFGLDLD--FSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
VK G D + +V N L+ Y + +D LF+++PEK +T+N +I+GY ++GL
Sbjct: 171 AFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGL 230
Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNA 188
T + L+ +M+ G P TF GVL + L ++G ++ GF + + N
Sbjct: 231 YTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQ 290
Query: 189 LINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPD 248
+++ Y++ + + R +FD MP VS+ +I Y E ++ F EM G
Sbjct: 291 ILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRR 350
Query: 249 GTAFVSVLS 257
F ++LS
Sbjct: 351 NFPFATMLS 359
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 92/188 (48%), Gaps = 6/188 (3%)
Query: 86 NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
N +++ +VK G V R LFD +P++ ++TW ++ YA+N +L+R+M C
Sbjct: 83 NTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSC 142
Query: 146 --PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL--NNALINMYARCGNLKK 201
PD VTF +L C + +V GF +NPFL +N L+ Y L
Sbjct: 143 TLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDL 202
Query: 202 ARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSH 261
A +F+ +P K V++ +I GY G ++ LF +M +SG +P F VL A
Sbjct: 203 ACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAV-- 260
Query: 262 AGLTDKGL 269
GL D L
Sbjct: 261 VGLHDFAL 268
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 182 NPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEML 241
N N +I+ + + G++ AR +FD MP +TVV+WT ++G Y + H + A +LF +M
Sbjct: 78 NTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMC 137
Query: 242 KSG--IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
+S PD F ++L C+ A + + + K G P
Sbjct: 138 RSSSCTLPDHVTFTTLLPGCNDA-VPQNAVGQVHAFAVKLGFDTNP 182
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust.
Identities = 196/517 (37%), Positives = 302/517 (58%), Gaps = 22/517 (4%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWL---GMCC 69
V +NA+++GY + + + LF M +QG + T+ + C G+L+ G
Sbjct: 483 VAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTC---GFLFAINQGKQV 539
Query: 70 HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
H +K G DLD V + ++ MYVKCG + + FD +P + W MISG +NG
Sbjct: 540 HAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEE 599
Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSN----PFL 185
++ +M+ +GV PD T + + + L A LE +QI AN N PF+
Sbjct: 600 ERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTA----LEQGRQIHANALKLNCTNDPFV 655
Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
+L++MYA+CG++ A +F + + +W A++ G HG G+ +QLF +M GI
Sbjct: 656 GTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGI 715
Query: 246 RPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL 305
+PD F+ VLSACSH+GL + ++ M YG++P EHY+C+ D LGRAG + +A
Sbjct: 716 KPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAE 775
Query: 306 ELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEAR 365
LIESM +E +++ LL AC++ + E + K+++LEP+++ YVLLSN+Y+ A
Sbjct: 776 NLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAAS 835
Query: 366 NLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD------K 419
D + R MM+ ++KKDPG+S++E+K ++H+F+V DR++ QT IYR + K
Sbjct: 836 KWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIK 895
Query: 420 LENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDC 479
E V E D T ++ EE HSEKLA+AFG+++T P T I V+KNLR+CGDC
Sbjct: 896 QEGYVPETDFTLVDVEE--EEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDC 953
Query: 480 HLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
H +K ++K+ +R+ ++RDA RFH FK G CSC DYW
Sbjct: 954 HNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/317 (29%), Positives = 157/317 (49%), Gaps = 12/317 (3%)
Query: 16 NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVK 75
N +S Y+ + S + F M E VE + VT + +L V L LG HC+ +K
Sbjct: 284 NKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALK 343
Query: 76 FGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLEL 135
GLDL +V N L+ MY K + R +FD + E+ LI+WN++I+G AQNGL + L
Sbjct: 344 LGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCL 403
Query: 136 YREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG----SNPFLNNALIN 191
+ ++ G+ PD T VL + + L GL + +Q+ + S+ F++ ALI+
Sbjct: 404 FMQLLRCGLKPDQYTMTSVLKAASSLPE---GLSLSKQVHVHAIKINNVSDSFVSTALID 460
Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
Y+R +K+A +F+ +V+W A++ GY G ++LF M K G R D
Sbjct: 461 AYSRNRCMKEAEILFE-RHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFT 519
Query: 252 FVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
+V C ++G + + Y +K+ Y L + ++D+ + G ++ A +S
Sbjct: 520 LATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVS--SGILDMYVKCGDMSAAQFAFDS 577
Query: 311 MLVEPDGAVWGALLGAC 327
+ V PD W ++ C
Sbjct: 578 IPV-PDDVAWTTMISGC 593
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 145/316 (45%), Gaps = 10/316 (3%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVD-PGYLWLGMCCHC 71
+ +N++I+G N L EAV LF ++ G++ + TM +L P L L H
Sbjct: 382 ISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHV 441
Query: 72 ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
+K D V L+ Y + + LF++ L+ WNAM++GY Q+
Sbjct: 442 HAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQSHDGHK 500
Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
L+L+ M G D T V +C L A + G +V +G+ + ++++ +++
Sbjct: 501 TLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILD 560
Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
MY +CG++ A+ FD +P V+WT +I G +G E A +F +M G+ PD
Sbjct: 561 MYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFT 620
Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA---LELI 308
++ A S ++G + + K P T +VD+ + G +++A + I
Sbjct: 621 IATLAKASSCLTALEQGRQ-IHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRI 679
Query: 309 ESMLVEPDGAVWGALL 324
E M + W A+L
Sbjct: 680 EMMNI----TAWNAML 691
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 96/191 (50%), Gaps = 5/191 (2%)
Query: 63 LWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISG 122
L LG C H + F + + + N L++MY KCGS+ Y R++FD++P++ L++WN++++
Sbjct: 55 LMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAA 114
Query: 123 YAQNGLAT-----HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
YAQ+ L+R ++ V +T +L C H G
Sbjct: 115 YAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKI 174
Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
G + F+ AL+N+Y + G +K+ + +F+ MP + VV W ++ Y G E A+ L
Sbjct: 175 GLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLS 234
Query: 238 DEMLKSGIRPD 248
SG+ P+
Sbjct: 235 SAFHSSGLNPN 245
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 75/144 (52%), Gaps = 5/144 (3%)
Query: 13 VCYNALISGYVLNSL-----VSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM 67
V +N++++ Y +S + +A LF +R+ V + +T+ +L +C+ GY+W
Sbjct: 106 VSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASE 165
Query: 68 CCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNG 127
H K GLD D V L+ +Y+K G V G+ LF+++P + ++ WN M+ Y + G
Sbjct: 166 SFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMG 225
Query: 128 LATHVLELYREMKSLGVCPDAVTF 151
++L S G+ P+ +T
Sbjct: 226 FKEEAIDLSSAFHSSGLNPNEITL 249
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 104/248 (41%), Gaps = 32/248 (12%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
V +N ++ Y+ EA+ L G+ N +T+ L I D
Sbjct: 212 VLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDS----------- 260
Query: 73 CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
G F+ GN D +I N +S Y +G + +
Sbjct: 261 --DAGQVKSFANGN-------------------DASSVSEIIFRNKGLSEYLHSGQYSAL 299
Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
L+ + +M V D VTF+ +L++ + + ++G +V G ++N+LINM
Sbjct: 300 LKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINM 359
Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
Y + AR +FD M + ++SW ++I G +G AV LF ++L+ G++PD
Sbjct: 360 YCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTM 419
Query: 253 VSVLSACS 260
SVL A S
Sbjct: 420 TSVLKAAS 427
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 388 bits (997), Expect = e-107, Method: Compositional matrix adjust.
Identities = 207/552 (37%), Positives = 318/552 (57%), Gaps = 38/552 (6%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
+FDE +++L +C NA+ S YV L EA+ +F M + GV + ++ML + C
Sbjct: 293 LFDE-YGASNLDLC-NAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQL 350
Query: 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKC------------------------- 95
+ G CH ++ G + ++ N L+ MY+KC
Sbjct: 351 RNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIV 410
Query: 96 ------GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSL-GVCPDA 148
G VD + F+ +PEK +++WN +ISG Q L +E++ M+S GV D
Sbjct: 411 AGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADG 470
Query: 149 VTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDG 208
VT + + S+C HLGA + + I+ NG + L L++M++RCG+ + A +IF+
Sbjct: 471 VTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNS 530
Query: 209 MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKG 268
+ + V +WTA IG + G+ E A++LFD+M++ G++PDG AFV L+ACSH GL +G
Sbjct: 531 LTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQG 590
Query: 269 LEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACK 328
E FY M +G+ P HY CMVDLLGRAG L EA++LIE M +EP+ +W +LL AC+
Sbjct: 591 KEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACR 650
Query: 329 IHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGY 388
+ NVE+A A K+ L P TG YVLLSN+Y+ A + + +VR+ M+E+ L+K PG
Sbjct: 651 VQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGT 710
Query: 389 SYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLEN----LVQEHDGTKRSDQKNSEEHLND 444
S ++++G+ H F GD +H + I MLD++ L D + + +E +
Sbjct: 711 SSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFM 770
Query: 445 TEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHH 504
HSEKLA+A+G+I+++ GT I ++KNLR+C DCH F K SK+ +R+ I+RD RFH+
Sbjct: 771 LSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHY 830
Query: 505 FKSGFCSCKDYW 516
+ G CSC D+W
Sbjct: 831 IRQGKCSCGDFW 842
Score = 159 bits (401), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 176/383 (45%), Gaps = 39/383 (10%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVD 59
VFDE S V + ++I GY +AV LF +M R++ V NSVTM+C++ C
Sbjct: 191 VFDE--MSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAK 248
Query: 60 PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
L G + G++++ + + L+ MY+KC ++D ++LFD+ L NAM
Sbjct: 249 LEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAM 308
Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
S Y + GL L ++ M GV PD ++ + +SSC+ L G + NGF
Sbjct: 309 ASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGF 368
Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
S + NALI+MY +C A IFD M KTVV+W +I+ GY +G + A + F+
Sbjct: 369 ESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFET 428
Query: 240 M--------------------------------LKSGIRPDGTAFVSVLSACSHAGLTDK 267
M + G+ DG +S+ SAC H G D
Sbjct: 429 MPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDL 488
Query: 268 GLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGAC 327
++ Y K G+Q T +VD+ R G A+ + S L D + W A +GA
Sbjct: 489 A-KWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNS-LTNRDVSAWTAAIGAM 546
Query: 328 KIHKNVELAELAFGKVIK--LEP 348
+ N E A F +I+ L+P
Sbjct: 547 AMAGNAERAIELFDDMIEQGLKP 569
Score = 145 bits (365), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 133/248 (53%), Gaps = 1/248 (0%)
Query: 15 YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
YN+LI GY + L +EA+ LF +M G+ + T L C G+ H + V
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161
Query: 75 KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
K G D V N L+ Y +CG +D RK+FD++ E+ +++W +MI GYA+ A ++
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221
Query: 135 L-YREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
L +R ++ V P++VT V V+S+CA L G +V I+ +G N + +AL++MY
Sbjct: 222 LFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMY 281
Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
+C + A+ +FD + A+ Y G A+ +F+ M+ SG+RPD + +
Sbjct: 282 MKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISML 341
Query: 254 SVLSACSH 261
S +S+CS
Sbjct: 342 SAISSCSQ 349
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 121/245 (49%), Gaps = 6/245 (2%)
Query: 70 HCICVKFGLDLDFSVGNCLMTMYVKCG---SVDYGRKLFDQVPEKGL-ITWNAMISGYAQ 125
H K GLD D S L+ + G S+ + +++F+ G +N++I GYA
Sbjct: 52 HRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYAS 111
Query: 126 NGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFL 185
+GL + L+ M + G+ PD TF LS+CA A G+++ I G+ + F+
Sbjct: 112 SGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFV 171
Query: 186 NNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS-G 244
N+L++ YA CG L AR +FD M + VVSWT++I GY + AV LF M++
Sbjct: 172 QNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEE 231
Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
+ P+ V V+SAC+ + G E Y G++ + +VD+ + ++ A
Sbjct: 232 VTPNSVTMVCVISACAKLEDLETG-EKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVA 290
Query: 305 LELIE 309
L +
Sbjct: 291 KRLFD 295
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 388 bits (996), Expect = e-107, Method: Compositional matrix adjust.
Identities = 202/518 (38%), Positives = 311/518 (60%), Gaps = 26/518 (5%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVT---MLCLLPICVDPGYLWLGMCC 69
V + A+ISG++ N EAV LF +M+ +GV N T +L LP+ + P +
Sbjct: 363 VSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPV-ISPSEV------ 415
Query: 70 HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
H VK + +VG L+ YVK G V+ K+F + +K ++ W+AM++GYAQ G
Sbjct: 416 HAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGET 475
Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG------SNP 183
++++ E+ G+ P+ TF +L+ CA A S+G Q Q +GF S+
Sbjct: 476 EAAIKMFGELTKGGIKPNEFTFSSILNVCAATNA-SMG----QGKQFHGFAIKSRLDSSL 530
Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
+++AL+ MYA+ GN++ A +F K +VSW ++I GY HG A+ +F EM K
Sbjct: 531 CVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKR 590
Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
++ DG F+ V +AC+HAGL ++G +YF M + P EH +CMVDL RAGQL +
Sbjct: 591 KVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEK 650
Query: 304 ALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE 363
A+++IE+M +W +L AC++HK EL LA K+I ++P ++ YVLLSN+Y+E
Sbjct: 651 AMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAE 710
Query: 364 ARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD----K 419
+ + +VR +M ER +KK+PGYS++E+K + + F+ GDR+H +IY L+ +
Sbjct: 711 SGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTR 770
Query: 420 LENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDC 479
L++L E D + + E HSE+LAIAFG+I T G+ ++++KNLR+CGDC
Sbjct: 771 LKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDC 830
Query: 480 HLFIKLVSKIVDRQFIVRDATRFHHFKS-GFCSCKDYW 516
HL IKL++KI +R+ +VRD+ RFHHF S G CSC D+W
Sbjct: 831 HLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/349 (29%), Positives = 173/349 (49%), Gaps = 5/349 (1%)
Query: 15 YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
Y +L+ G+ + EA LF + G+E++ +L + G HC C+
Sbjct: 61 YISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCI 120
Query: 75 KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
KFG D SVG L+ Y+K + GRK+FD++ E+ ++TW +ISGYA+N + VL
Sbjct: 121 KFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLT 180
Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
L+ M++ G P++ TF L A G GL+V + NG ++N+LIN+Y
Sbjct: 181 LFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYL 240
Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
+CGN++KAR +FD K+VV+W ++I GY +G A+ +F M + +R ++F S
Sbjct: 241 KCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFAS 300
Query: 255 VLSACSHAGLTD-KGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
V+ C A L + + E + KYG T ++ + + +AL L + +
Sbjct: 301 VIKLC--ANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGC 358
Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIK--LEPMNTGYYVLLSNI 360
+ W A++ + E A F ++ + + P Y V+L+ +
Sbjct: 359 VGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTAL 407
Score = 158 bits (400), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 107/346 (30%), Positives = 172/346 (49%), Gaps = 9/346 (2%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
VFDE +K ++ V + LISGY NS+ E ++LF +M+ +G + NS T L + +
Sbjct: 150 VFDE-MKERNV-VTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEE 207
Query: 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
G G+ H + VK GLD V N L+ +Y+KCG+V R LFD+ K ++TWN+MI
Sbjct: 208 GVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMI 267
Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
SGYA NGL L ++ M+ V +F V+ CA+L ++ + GF
Sbjct: 268 SGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFL 327
Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
+ + AL+ Y++C + A +F + VVSWTA+I G+ + E AV LF E
Sbjct: 328 FDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSE 387
Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
M + G+RP+ + +L+A ++ + K + T ++D + G
Sbjct: 388 MKRKGVRPNEFTYSVILTALPVISPSE-----VHAQVVKTNYERSSTVGTALLDAYVKLG 442
Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345
++ EA ++ S + + D W A+L E A FG++ K
Sbjct: 443 KVEEAAKVF-SGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTK 487
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 113/258 (43%), Gaps = 17/258 (6%)
Query: 104 LFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGA 163
LFD+ P + ++ +++ G++++G L+ + LG+ D F VL A L
Sbjct: 49 LFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATLCD 108
Query: 164 HSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGG 223
G ++ Q GF + + +L++ Y + N K R +FD M + VV+WT +I G
Sbjct: 109 ELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISG 168
Query: 224 YGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQP 283
Y + + + LF M G +P+ F + L + G+ +GL+ + + K GL
Sbjct: 169 YARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQ-VHTVVVKNGLDK 227
Query: 284 GPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH------------- 330
+++L + G + +A L + V+ W +++ +
Sbjct: 228 TIPVSNSLINLYLKCGNVRKARILFDKTEVK-SVVTWNSMISGYAANGLDLEALGMFYSM 286
Query: 331 --KNVELAELAFGKVIKL 346
V L+E +F VIKL
Sbjct: 287 RLNYVRLSESSFASVIKL 304
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 386 bits (991), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/540 (36%), Positives = 311/540 (57%), Gaps = 43/540 (7%)
Query: 15 YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
+ A I+ +N L +A L+ ++ + N T LL C G H +
Sbjct: 98 FTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKS----GKLIHTHVL 153
Query: 75 KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLIT------------------- 115
KFGL +D V L+ +Y K G V +K+FD++PE+ L++
Sbjct: 154 KFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARA 213
Query: 116 ------------WNAMISGYAQNGLATHVLELYREMKSLGVC-PDAVTFVGVLSSCAHLG 162
WN MI GYAQ+G L L++++ + G PD +T V LS+C+ +G
Sbjct: 214 LFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIG 273
Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIG 222
A G + ++++ N + LI+MY++CG+L++A +F+ PRK +V+W A+I
Sbjct: 274 ALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIA 333
Query: 223 GYGIHGHGEVAVQLFDEMLK-SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGL 281
GY +HG+ + A++LF+EM +G++P F+ L AC+HAGL ++G+ F M +YG+
Sbjct: 334 GYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGI 393
Query: 282 QPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFG 341
+P EHY C+V LLGRAGQL A E I++M ++ D +W ++LG+CK+H + L +
Sbjct: 394 KPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAE 453
Query: 342 KVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFM 401
+I L N+G YVLLSNIY+ + +G+ +VR +M+E+ + K+PG S +E++ +VH F
Sbjct: 454 YLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFR 513
Query: 402 VGDRNHHQTVEIYRMLDKLENLVQEH-----DGTKRSDQKNSEEHLNDTEVHSEKLAIAF 456
GDR H ++ EIY ML K+ ++ H T D + +E+ +VHSE+LAIA+
Sbjct: 514 AGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKE-QSLQVHSERLAIAY 572
Query: 457 GIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
G+I+T PG+ + + KNLR+C DCH KL+SKI R+ ++RD RFHHF G CSC D+W
Sbjct: 573 GLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 125/242 (51%), Gaps = 6/242 (2%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVDPGYLWLGMCCHC 71
V +N +I GY + ++A+ LF K+ +G + + +T++ L C G L G H
Sbjct: 224 VSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHV 283
Query: 72 ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
+ L+ V L+ MY KCGS++ +F+ P K ++ WNAMI+GYA +G +
Sbjct: 284 FVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQD 343
Query: 132 VLELYREMKSL-GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--A 188
L L+ EM+ + G+ P +TF+G L +CAH G + G+ + + + +G P + +
Sbjct: 344 ALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESM-GQEYGIKPKIEHYGC 402
Query: 189 LINMYARCGNLKKARAIFDGMPRKT-VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
L+++ R G LK+A M V W++++G +HG + ++ + ++ I+
Sbjct: 403 LVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKN 462
Query: 248 DG 249
G
Sbjct: 463 SG 464
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 118/275 (42%), Gaps = 38/275 (13%)
Query: 88 LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPD 147
L Y G + + LF Q + L + A I+ + NGL LY ++ S + P+
Sbjct: 70 LHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPN 129
Query: 148 AVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFD 207
TF +L SC+ G + + G G +P++ L+++YA+ G++ A+ +FD
Sbjct: 130 EFTFSSLLKSCST----KSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFD 185
Query: 208 GMPRKT-------------------------------VVSWTAIIGGYGIHGHGEVAVQL 236
MP ++ +VSW +I GY HG A+ L
Sbjct: 186 RMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALML 245
Query: 237 FDEMLKSG-IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLL 295
F ++L G +PD V+ LSACS G + G + + ++ + T ++D+
Sbjct: 246 FQKLLAEGKPKPDEITVVAALSACSQIGALETG-RWIHVFVKSSRIRLNVKVCTGLIDMY 304
Query: 296 GRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
+ G L EA+ L+ + D W A++ +H
Sbjct: 305 SKCGSLEEAV-LVFNDTPRKDIVAWNAMIAGYAMH 338
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 12/205 (5%)
Query: 183 PFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
P LN L YA G ++ + A+F + +TA I I+G + A L+ ++L
Sbjct: 64 PVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLS 123
Query: 243 SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
S I P+ F S+L +CS K + + K+GL P T +VD+ + G +
Sbjct: 124 SEINPNEFTFSSLLKSCS-----TKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVV 178
Query: 303 EALELIESMLVEPDGAVWG--ALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
A ++ + M P+ ++ A++ NVE A F + + + ++ + V++
Sbjct: 179 SAQKVFDRM---PERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVS--WNVMIDGY 233
Query: 361 YSEARNLDGIMRVRMMMRERRLKKD 385
D +M + ++ E + K D
Sbjct: 234 AQHGFPNDALMLFQKLLAEGKPKPD 258
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 386 bits (991), Expect = e-106, Method: Compositional matrix adjust.
Identities = 212/520 (40%), Positives = 298/520 (57%), Gaps = 6/520 (1%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
+FDE + V + AL SGY + EA+ LF KM E GV+ +S ++ +L CV
Sbjct: 168 LFDEIPDRS--VVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHV 225
Query: 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
G L G + + + V L+ +Y KCG ++ R +FD + EK ++TW+ MI
Sbjct: 226 GDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMI 285
Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
GYA N +EL+ +M + PD + VG LSSCA LGA +G I + F
Sbjct: 286 QGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFL 345
Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
+N F+ NALI+MYA+CG + + +F M K +V A I G +GH +++ +F +
Sbjct: 346 TNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQT 405
Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQ 300
K GI PDG+ F+ +L C HAGL GL +F + Y L+ EHY CMVDL GRAG
Sbjct: 406 EKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGM 465
Query: 301 LNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNI 360
L++A LI M + P+ VWGALL C++ K+ +LAE ++I LEP N G YV LSNI
Sbjct: 466 LDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNI 525
Query: 361 YSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKL 420
YS D VR MM ++ +KK PGYS++EL+G+VH F+ D++H + +IY L+ L
Sbjct: 526 YSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDL 585
Query: 421 ENLVQEHDGTKRSD----QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
N ++ ++ EE HSEKLA+A G+I+T G I V+KNLR+C
Sbjct: 586 GNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVC 645
Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
GDCH +KL+SKI R+ +VRD RFH F +G CSC DYW
Sbjct: 646 GDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685
Score = 194 bits (493), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/332 (29%), Positives = 181/332 (54%), Gaps = 2/332 (0%)
Query: 15 YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
YN+LI+G+V N L E + LF +R+ G+ ++ T +L C LG+ H + V
Sbjct: 79 YNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVV 138
Query: 75 KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
K G + D + L+++Y G ++ KLFD++P++ ++TW A+ SGY +G ++
Sbjct: 139 KCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAID 198
Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
L+++M +GV PD+ V VLS+C H+G G + + ++ N F+ L+N+YA
Sbjct: 199 LFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYA 258
Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
+CG ++KAR++FD M K +V+W+ +I GY + + ++LF +ML+ ++PD + V
Sbjct: 259 KCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVG 318
Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVE 314
LS+C+ G D G E+ + +++ ++D+ + G + E+ + M E
Sbjct: 319 FLSSCASLGALDLG-EWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEM-KE 376
Query: 315 PDGAVWGALLGACKIHKNVELAELAFGKVIKL 346
D + A + + +V+L+ FG+ KL
Sbjct: 377 KDIVIMNAAISGLAKNGHVKLSFAVFGQTEKL 408
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 123/255 (48%), Gaps = 2/255 (0%)
Query: 70 HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
H + L D + N L+ + Y LF + +N++I+G+ N L
Sbjct: 33 HVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLINGFVNNHLF 92
Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
L+L+ ++ G+ TF VL +C + +G+++ + GF + +L
Sbjct: 93 HETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSL 152
Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
+++Y+ G L A +FD +P ++VV+WTA+ GY G A+ LF +M++ G++PD
Sbjct: 153 LSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDS 212
Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
V VLSAC H G D G E+ + +Q T +V+L + G++ +A + +
Sbjct: 213 YFIVQVLSACVHVGDLDSG-EWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFD 271
Query: 310 SMLVEPDGAVWGALL 324
SM VE D W ++
Sbjct: 272 SM-VEKDIVTWSTMI 285
>sp|Q9LXY5|PP284_ARATH Pentatricopeptide repeat-containing protein At3g56550
OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1
Length = 581
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/449 (41%), Positives = 281/449 (62%), Gaps = 7/449 (1%)
Query: 74 VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
++ G D V L+ Y GSV+ K+FD++P + L++WN MI ++ GL L
Sbjct: 134 IRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHNQAL 193
Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
+Y+ M + GVC D+ T V +LSSCAH+ A ++G+ + + S F++NALI+MY
Sbjct: 194 SMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSNALIDMY 253
Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
A+CG+L+ A +F+GM ++ V++W ++I GYG+HGHG A+ F +M+ SG+RP+ F+
Sbjct: 254 AKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAITFL 313
Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
+L CSH GL +G+E+F M +++ L P +HY CMVDL GRAGQL +LE+I +
Sbjct: 314 GLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLENSLEMIYASSC 373
Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
D +W LLG+CKIH+N+EL E+A K+++LE N G YVL+++IYS A + +
Sbjct: 374 HEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAANDAQAFASM 433
Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS 433
R ++R L+ PG+S++E+ +VH F+V D+ H ++ IY L ++ N G K
Sbjct: 434 RKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEVINRAIL-AGYKPE 492
Query: 434 DQKNSEEHLND------TEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVS 487
D + L+D HSEKLAIA+G++ T+ GT + + KNLR+C DCH F K VS
Sbjct: 493 DSNRTAPTLSDRCLGSADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTKYVS 552
Query: 488 KIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
K +R+ IVRD RFHHF G CSC DYW
Sbjct: 553 KAFNREIIVRDRVRFHHFADGICSCNDYW 581
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 128/241 (53%), Gaps = 9/241 (3%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
VFDE V +N +I + L ++A+S++ +M +GV +S T++ LL C
Sbjct: 164 VFDE--MPVRDLVSWNVMICCFSHVGLHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHV 221
Query: 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
L +G+ H I + V N L+ MY KCGS++ +F+ + ++ ++TWN+MI
Sbjct: 222 SALNMGVMLHRIACDIRCESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMI 281
Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
GY +G + +R+M + GV P+A+TF+G+L C+H G G+E +I ++ F
Sbjct: 282 IGYGVHGHGVEAISFFRKMVASGVRPNAITFLGLLLGCSHQGLVKEGVE-HFEIMSSQFH 340
Query: 181 SNPFLNN--ALINMYARCGNLKKA-RAIFDGMPRKTVVSWTAIIGGYGIHGH---GEVAV 234
P + + ++++Y R G L+ + I+ + V W ++G IH + GEVA+
Sbjct: 341 LTPNVKHYGCMVDLYGRAGQLENSLEMIYASSCHEDPVLWRTLLGSCKIHRNLELGEVAM 400
Query: 235 Q 235
+
Sbjct: 401 K 401
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 384 bits (987), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/529 (38%), Positives = 315/529 (59%), Gaps = 24/529 (4%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
VFD ++ + V +N +I Y N + SEA+ +F +MR +G + + T+ +L C
Sbjct: 118 VFDGMLERS--LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSAC--- 172
Query: 61 GYLWLGMCC---HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWN 117
G + C HC+ VK +DL+ VG L+ +Y KCG + ++F+ + +K +TW+
Sbjct: 173 GVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWS 232
Query: 118 AMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN 177
+M++GY QN L LYR + + + + T V+ +C++L A G ++ I +
Sbjct: 233 SMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKS 292
Query: 178 GFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLF 237
GFGSN F+ ++ ++MYA+CG+L+++ IF + K + W II G+ H + + LF
Sbjct: 293 GFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILF 352
Query: 238 DEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
++M + G+ P+ F S+LS C H GL ++G +F M+ YGL P HY+CMVD+LGR
Sbjct: 353 EKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGR 412
Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLL 357
AG L+EA ELI+S+ +P ++WG+LL +C+++KN+ELAE+A K+ +LEP N G +VLL
Sbjct: 413 AGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLL 472
Query: 358 SNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRML 417
SNIY+ + + I + R ++R+ +KK G S++++K +VH F VG+ H + EI L
Sbjct: 473 SNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTL 532
Query: 418 DKLENLVQEHDGTKRSDQKNSEEH-LNDTEV---------HSEKLAIAFGIINTSPGTEI 467
D NLV + ++ K S EH L+D E+ HSEKLA+ FG++ + +
Sbjct: 533 D---NLVIKF---RKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPV 586
Query: 468 VVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
+MKNLRIC DCH F+K S R IVRD RFHHF G CSC D+W
Sbjct: 587 RIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/331 (25%), Positives = 158/331 (47%), Gaps = 15/331 (4%)
Query: 53 LLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKG 112
+L +C G + CH ++ L+ D ++ N L+ Y KCG V+ R++FD + E+
Sbjct: 67 ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126
Query: 113 LITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQ 172
L++WN MI Y +N + + L+++ EM++ G T VLS+C G + LE ++
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSAC---GVNCDALECKK 183
Query: 173 ---QIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGH 229
N ++ AL+++YA+CG +K A +F+ M K+ V+W++++ GY + +
Sbjct: 184 LHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKN 243
Query: 230 GEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYT 289
E A+ L+ + + + SV+ ACS+ +G + + + K G +
Sbjct: 244 YEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG-KQMHAVICKSGFGSNVFVAS 302
Query: 290 CMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--LE 347
VD+ + G L E+ +I S + E + +W ++ H + + F K+ + +
Sbjct: 303 SAVDMYAKCGSLRESY-IIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMH 361
Query: 348 PMNTGYYVLLS-----NIYSEARNLDGIMRV 373
P + LLS + E R +MR
Sbjct: 362 PNEVTFSSLLSVCGHTGLVEEGRRFFKLMRT 392
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/523 (37%), Positives = 316/523 (60%), Gaps = 18/523 (3%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
+FDE S + + +++GY N+ V +A +F M E+ E++ +ML
Sbjct: 194 IFDE--MSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEK-TEVSWTSMLM-------- 242
Query: 61 GYLWLGMCCHCICVKFGLDLDFSVG-NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
GY+ G + + + + N +++ + G + R++FD + E+ +W +
Sbjct: 243 GYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTV 302
Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
I + +NG L+L+ M+ GV P T + +LS CA L + G +V Q+ F
Sbjct: 303 IKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQF 362
Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
+ ++ + L+ MY +CG L K++ IFD P K ++ W +II GY HG GE A+++F E
Sbjct: 363 DVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCE 422
Query: 240 MLKSG-IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
M SG +P+ FV+ LSACS+AG+ ++GL+ + M++ +G++P HY CMVD+LGRA
Sbjct: 423 MPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRA 482
Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
G+ NEA+E+I+SM VEPD AVWG+LLGAC+ H +++AE K+I++EP N+G Y+LLS
Sbjct: 483 GRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLS 542
Query: 359 NIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVE-IYRML 417
N+Y+ + +R +M+ R ++K PG S+ E++ +VH F G N H E I ++L
Sbjct: 543 NMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKIL 602
Query: 418 DKLENLVQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNL 473
D+L+ L++E D + + EE +N + HSE+LA+A+ ++ S G I VMKNL
Sbjct: 603 DELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNL 662
Query: 474 RICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
R+C DCH IK++SK+ +R+ I+RDA RFHHF++G CSCKDYW
Sbjct: 663 RVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705
Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 113/250 (45%), Gaps = 20/250 (8%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCH-C 71
V + AL+ GYV N V A SLF KM E+ N V+ +L G+L G C
Sbjct: 111 VSWTALVKGYVHNGKVDVAESLFWKMPEK----NKVSWTVML-----IGFLQDGRIDDAC 161
Query: 72 ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
+ D D ++ K G VD R++FD++ E+ +ITW M++GY QN
Sbjct: 162 KLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDD 221
Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN-NALI 190
+++ M V++ +L G E+ + + P + NA+I
Sbjct: 222 ARKIFDVMPE----KTEVSWTSMLMGYVQNGRIEDAEELFEVMPV-----KPVIACNAMI 272
Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
+ + G + KAR +FD M + SW +I + +G A+ LF M K G+RP
Sbjct: 273 SGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFP 332
Query: 251 AFVSVLSACS 260
+S+LS C+
Sbjct: 333 TLISILSVCA 342
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 129/277 (46%), Gaps = 27/277 (9%)
Query: 86 NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
N L++ Y+K G +D RK+FD +PE+ +++W A++ GY NG L+ +M
Sbjct: 83 NGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKV 142
Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
V +G L G ++ + I + ++I+ + G + +AR I
Sbjct: 143 SWTVMLIGFLQD----GRIDDACKLYEMIP----DKDNIARTSMIHGLCKEGRVDEAREI 194
Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT--AFVSVLSACSHAG 263
FD M ++V++WT ++ GYG + + A ++FD M P+ T ++ S+L G
Sbjct: 195 FDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVM------PEKTEVSWTSMLMGYVQNG 248
Query: 264 LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGAL 323
+ E F M K + M+ LG+ G++ +A + +SM E + A W +
Sbjct: 249 RIEDAEELFEVMPVKPVIA-----CNAMISGLGQKGEIAKARRVFDSM-KERNDASWQTV 302
Query: 324 LGACKIHKN--VELAELAFGKVIKLEPMNTGYYVLLS 358
+ KIH+ EL L +++ + + + L+S
Sbjct: 303 I---KIHERNGFELEALDLFILMQKQGVRPTFPTLIS 336
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 97/228 (42%), Gaps = 48/228 (21%)
Query: 84 VGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLG 143
N +T + G + RKLFD K + +WN+M++GY N + +L+ EM
Sbjct: 19 TANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEM---- 74
Query: 144 VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR 203
PD N N L++ Y + G + +AR
Sbjct: 75 --PD---------------------------------RNIISWNGLVSGYMKNGEIDEAR 99
Query: 204 AIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAG 263
+FD MP + VVSWTA++ GY +G +VA LF +M + + ++ +L G
Sbjct: 100 KVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEK----NKVSWTVMLIGFLQDG 155
Query: 264 LTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
D + + + +K + T M+ L + G+++EA E+ + M
Sbjct: 156 RIDDACKLYEMIPDKDNIA-----RTSMIHGLCKEGRVDEAREIFDEM 198
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 382 bits (981), Expect = e-105, Method: Compositional matrix adjust.
Identities = 208/559 (37%), Positives = 306/559 (54%), Gaps = 47/559 (8%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
VFDE S V +N +I Y LV EA LF +M++ V + + + ++ C
Sbjct: 168 VFDE--MSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRT 225
Query: 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYV--------------------------- 93
G + + ++ + +D + L+TMY
Sbjct: 226 GNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMV 285
Query: 94 ----KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAV 149
KCG +D + +FDQ +K L+ W MIS Y ++ L ++ EM G+ PD V
Sbjct: 286 SGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVV 345
Query: 150 TFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGM 209
+ V+S+CA+LG V I NG S +NNALINMYA+CG L R +F+ M
Sbjct: 346 SMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKM 405
Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
PR+ VVSW+++I +HG A+ LF M + + P+ FV VL CSH+GL ++G
Sbjct: 406 PRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGK 465
Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
+ F M ++Y + P EHY CMVDL GRA L EALE+IESM V + +WG+L+ AC+I
Sbjct: 466 KIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRI 525
Query: 330 HKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYS 389
H +EL + A ++++LEP + G VL+SNIY+ + + + +R +M E+ + K+ G S
Sbjct: 526 HGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLS 585
Query: 390 YVELKGRVHLFMVGDRNHHQTVEIYRMLD------KLENLVQEHDGTKRSDQKNSEEHLN 443
++ G+ H F++GD+ H Q+ EIY LD KL V + G+ D + EE +
Sbjct: 586 RIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDC-GSVLVDVE-EEEKKD 643
Query: 444 DTEVHSEKLAIAFGIINTSPGTE------IVVMKNLRICGDCHLFIKLVSKIVDRQFIVR 497
HSEKLA+ FG++N E I ++KNLR+C DCHLF KLVSK+ +R+ IVR
Sbjct: 644 LVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVR 703
Query: 498 DATRFHHFKSGFCSCKDYW 516
D TRFH +K+G CSC+DYW
Sbjct: 704 DRTRFHCYKNGLCSCRDYW 722
Score = 149 bits (375), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 95/379 (25%), Positives = 172/379 (45%), Gaps = 39/379 (10%)
Query: 5 SIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLW 64
SI S ++ +N + +S + + ++R G ++ + L +L L+
Sbjct: 69 SIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALF 128
Query: 65 LGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYA 124
GM H + K D V M MY CG ++Y R +FD++ + ++TWN MI Y
Sbjct: 129 EGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYC 188
Query: 125 QNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQAN------- 177
+ GL +L+ EMK V PD + ++S+C G + + + N
Sbjct: 189 RFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTH 248
Query: 178 ----------GFG--------------SNPFLNNALINMYARCGNLKKARAIFDGMPRKT 213
G G N F++ A+++ Y++CG L A+ IFD +K
Sbjct: 249 LLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKD 308
Query: 214 VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFY 273
+V WT +I Y + + A+++F+EM SGI+PD + SV+SAC++ G+ DK ++ +
Sbjct: 309 LVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKA-KWVH 367
Query: 274 GMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAV--WGALLGACKIHK 331
+ GL+ ++++ + G L+ ++ E M P V W +++ A +H
Sbjct: 368 SCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKM---PRRNVVSWSSMINALSMHG 424
Query: 332 NVELAELAFGKVIK--LEP 348
A F ++ + +EP
Sbjct: 425 EASDALSLFARMKQENVEP 443
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 382 bits (980), Expect = e-105, Method: Compositional matrix adjust.
Identities = 208/522 (39%), Positives = 293/522 (56%), Gaps = 8/522 (1%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
VFDE K +N L GYV N L E++ L+ KMR+ GV + T ++
Sbjct: 65 VFDEMHKPR--IFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQL 122
Query: 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
G G H VK+G V L+ MY+K G + LF+ + K L+ WNA +
Sbjct: 123 GDFSCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFL 182
Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
+ Q G + LE + +M + V D+ T V +LS+C LG+ +G E+ + +
Sbjct: 183 AVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEID 242
Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
N + NA ++M+ +CGN + AR +F+ M ++ VVSW+ +I GY ++G A+ LF M
Sbjct: 243 CNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTM 302
Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM--KNKYGLQPGPEHYTCMVDLLGRA 298
G+RP+ F+ VLSACSHAGL ++G YF M N L+P EHY CMVDLLGR+
Sbjct: 303 QNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRS 362
Query: 299 GQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
G L EA E I+ M VEPD +WGALLGAC +H+++ L + +++ P Y+VLLS
Sbjct: 363 GLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLS 422
Query: 359 NIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD 418
NIY+ A D + +VR MR+ KK YS VE +G++H F GD++H Q+ IY LD
Sbjct: 423 NIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLD 482
Query: 419 KLENLVQE----HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLR 474
++ +++ D EE HSEKLAIAFG+I PG I VMKNLR
Sbjct: 483 EILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLR 542
Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
C DCH F K VS + + I+RD RFHHF++G CSCK++W
Sbjct: 543 TCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584
Score = 112 bits (279), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 102/203 (50%)
Query: 70 HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
H I ++ G S+ L+ V G + Y R++FD++ + + WN + GY +N L
Sbjct: 31 HAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQLP 90
Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
L LY++M+ LGV PD T+ V+ + + LG S G + + GFG + L
Sbjct: 91 FESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVATEL 150
Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
+ MY + G L A +F+ M K +V+W A + G+ +A++ F++M ++ D
Sbjct: 151 VMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDS 210
Query: 250 TAFVSVLSACSHAGLTDKGLEYF 272
VS+LSAC G + G E +
Sbjct: 211 FTVVSMLSACGQLGSLEIGEEIY 233
>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530
OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
Length = 591
Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust.
Identities = 208/526 (39%), Positives = 305/526 (57%), Gaps = 12/526 (2%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQG-VEINSVTMLCLLPICVD 59
VF + + T L+ C N +I + L+ E LF +R + N ++ L C+
Sbjct: 68 VFSQRLNPT-LSHC-NTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIK 125
Query: 60 PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
G L G+ H G D + LM +Y C + K+FD++P++ ++WN +
Sbjct: 126 SGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVL 185
Query: 120 ISGYAQNGLATHVLELYREMKSL---GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQA 176
S Y +N VL L+ +MK+ V PD VT + L +CA+LGA G +V I
Sbjct: 186 FSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDE 245
Query: 177 NGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQL 236
NG L+N L++MY+RCG++ KA +F GM + VVSWTA+I G ++G G+ A++
Sbjct: 246 NGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEA 305
Query: 237 FDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN-KYGLQPGPEHYTCMVDLL 295
F+EMLK GI P+ +LSACSH+GL +G+ +F M++ ++ ++P HY C+VDLL
Sbjct: 306 FNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLL 365
Query: 296 GRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYV 355
GRA L++A LI+SM ++PD +W LLGAC++H +VEL E +I+L+ G YV
Sbjct: 366 GRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYV 425
Query: 356 LLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYR 415
LL N YS + + +R +M+E+R+ PG S +EL+G VH F+V D +H + EIY+
Sbjct: 426 LLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYK 485
Query: 416 MLDKLENLVQ-----EHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVM 470
ML ++ ++ ++ + ++ EE HSEKLAIAFGI+ T PGT I V
Sbjct: 486 MLAEINQQLKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVT 545
Query: 471 KNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
KNLR C DCH F K VS + DR IVRD +RFHHFK G CSC D+W
Sbjct: 546 KNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591
>sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein At3g49710
OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1
Length = 721
Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust.
Identities = 204/520 (39%), Positives = 310/520 (59%), Gaps = 20/520 (3%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
V +N++I Y + ++A++L+ +M +G +I+ T+ +L +L G H
Sbjct: 206 VSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGK 265
Query: 73 CVKFGLDLDFSVGNCLMTMYVKCGSVD---YGRKLFDQVPEKGLITWNAMISGYAQNG-L 128
+K G + VG+ L+ Y KCG D K+F ++ L+ WN MISGY+ N L
Sbjct: 266 LIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEEL 325
Query: 129 ATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSV-----GLEVEQQIQANGFGSNP 183
+ ++ +R+M+ +G PD +FV V S+C++L + S GL ++ I +N
Sbjct: 326 SEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRIS--- 382
Query: 184 FLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS 243
+NNALI++Y + GNL+ AR +FD MP VS+ +I GY HGHG A+ L+ ML S
Sbjct: 383 -VNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDS 441
Query: 244 GIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNE 303
GI P+ FV+VLSAC+H G D+G EYF MK + ++P EHY+CM+DLLGRAG+L E
Sbjct: 442 GIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEE 501
Query: 304 ALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSE 363
A I++M +P W ALLGAC+ HKN+ LAE A +++ ++P+ YV+L+N+Y++
Sbjct: 502 AERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYAD 561
Query: 364 ARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD----- 418
AR + + VR MR +R++K PG S++E+K + H+F+ D +H E+ L+
Sbjct: 562 ARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKK 621
Query: 419 --KLENLVQEHDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRIC 476
K+ ++ + + D+ + HSEKLA+AFG+++T G E+VV+KNLRIC
Sbjct: 622 MKKVGYVMDKKWAMVKEDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDGEELVVVKNLRIC 681
Query: 477 GDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
GDCH IK +S + R+ IVRD RFH FK G CSC DYW
Sbjct: 682 GDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721
Score = 129 bits (325), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 113/399 (28%), Positives = 174/399 (43%), Gaps = 46/399 (11%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
+FDE + TV YN LISGY A+ LF +MR+ G E++ T+ L+ C D
Sbjct: 96 LFDEIPQPD--TVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDR 153
Query: 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPE-KGLITWNAM 119
L + HC V G D SV N +T Y K G + +F + E + ++WN+M
Sbjct: 154 VDLIKQL--HCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSM 211
Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
I Y Q+ L LY+EM G D T VL++ L G + ++ GF
Sbjct: 212 IVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGF 271
Query: 180 GSNPFLNNALINMYARCG---NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGH-GEVAVQ 235
N + + LI+ Y++CG + + +F + +V W +I GY ++ E AV+
Sbjct: 272 HQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEAVK 331
Query: 236 LFDEMLKSGIRPDGTAFVSVLSACSHA----------GLTDKG-------------LEYF 272
F +M + G RPD +FV V SACS+ GL K + +
Sbjct: 332 SFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLY 391
Query: 273 YGMKN----KYGLQPGPE----HYTCMVDLLGRAGQLNEALELIESML---VEPDGAVWG 321
Y N ++ PE + CM+ + G EAL L + ML + P+ +
Sbjct: 392 YKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFV 451
Query: 322 ALLGACKIHKNVELAELAFG---KVIKLEPMNTGYYVLL 357
A+L AC V+ + F + K+EP Y ++
Sbjct: 452 AVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMI 490
Score = 105 bits (262), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 127/261 (48%), Gaps = 16/261 (6%)
Query: 86 NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
N ++ Y K + R+LFD++P+ +++N +ISGYA + L++ M+ LG
Sbjct: 78 NVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFE 137
Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ----ANGFGSNPFLNNALINMYARCGNLKK 201
D T G++++C +++ +Q+ + GF S +NNA + Y++ G L++
Sbjct: 138 VDGFTLSGLIAACCDR------VDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLRE 191
Query: 202 ARAIFDGMPR-KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
A ++F GM + VSW ++I YG H G A+ L+ EM+ G + D SVL+A +
Sbjct: 192 AVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALT 251
Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEAL--ELIESMLVEPDGA 318
G + F+G K G + ++D + G + E + ++ PD
Sbjct: 252 SLDHLIGGRQ-FHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLV 310
Query: 319 VWGALLGACKIHKNVELAELA 339
VW ++ + N EL+E A
Sbjct: 311 VWNTMISGYSM--NEELSEEA 329
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 71/185 (38%), Gaps = 18/185 (9%)
Query: 151 FVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP 210
FV + S C L ++ N F N ++ YA+ + AR +FD +P
Sbjct: 49 FVNLYSKCGRLSYARAAFYSTEE-------PNVFSYNVIVKAYAKDSKIHIARQLFDEIP 101
Query: 211 RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE 270
+ VS+ +I GY A+ LF M K G DG +++AC K L
Sbjct: 102 QPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDRVDLIKQLH 161
Query: 271 YFYGMKNKYGLQPGPEHYT----CMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
F + G + Y+ V + G L EA+ + M D W +++ A
Sbjct: 162 CF-------SVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVA 214
Query: 327 CKIHK 331
HK
Sbjct: 215 YGQHK 219
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
S+ +L+N +N+Y++CG L ARA F V S+ I+ Y +A QLFDE
Sbjct: 40 ASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDE 99
Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
+ +PD ++ +++S + A T + F M+
Sbjct: 100 I----PQPDTVSYNTLISGYADARETFAAMVLFKRMRK 133
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 378 bits (970), Expect = e-104, Method: Compositional matrix adjust.
Identities = 198/522 (37%), Positives = 303/522 (58%), Gaps = 17/522 (3%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
+FDE + V + +I+GY N+ V A LF M E+ E++ +ML
Sbjct: 194 IFDEMRERN--VVTWTTMITGYRQNNRVDVARKLFEVMPEK-TEVSWTSMLL-------- 242
Query: 61 GYLWLGMCCHCICVKFGLDLDFSVG-NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
GY G + + + N ++ + + G + R++FD + ++ TW M
Sbjct: 243 GYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGM 302
Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
I Y + G L+L+ +M+ GV P + + +LS CA L + G +V + F
Sbjct: 303 IKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQF 362
Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
+ ++ + L+ MY +CG L KA+ +FD K ++ W +II GY HG GE A+++F E
Sbjct: 363 DDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHE 422
Query: 240 MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
M SG P+ +++L+ACS+AG ++GLE F M++K+ + P EHY+C VD+LGRAG
Sbjct: 423 MPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAG 482
Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
Q+++A+ELIESM ++PD VWGALLGACK H ++LAE+A K+ + EP N G YVLLS+
Sbjct: 483 QVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSS 542
Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGD-RNHHQTVEIYRMLD 418
I + + VR MR + K PG S++E+ +VH+F G +NH + I ML+
Sbjct: 543 INASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMMLE 602
Query: 419 KLENLVQEH----DGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLR 474
K + L++E D + + EE ++ HSE+LA+A+G++ G I VMKNLR
Sbjct: 603 KTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLR 662
Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
+CGDCH IKL+SK+ +R+ I+RDA RFHHF +G CSC+DYW
Sbjct: 663 VCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 121/289 (41%), Gaps = 45/289 (15%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGV----------------- 43
+FDE S V +N L+SGY+ N ++ EA ++F M E+ V
Sbjct: 70 LFDE--MSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVG 127
Query: 44 ----------EINSVTMLCLLPICVDPGYLWLGMCCH-CICVKFGLDLDFSVGNCLMTMY 92
E N V+ + +D G + + + VK D ++
Sbjct: 128 EAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVK-----DVVASTNMIGGL 182
Query: 93 VKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFV 152
+ G VD R +FD++ E+ ++TW MI+GY QN +L+ M V++
Sbjct: 183 CREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPE----KTEVSWT 238
Query: 153 GVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN-NALINMYARCGNLKKARAIFDGMPR 211
+L LG G + + P + NA+I + G + KAR +FD M
Sbjct: 239 SML-----LGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMED 293
Query: 212 KTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
+ +W +I Y G A+ LF +M K G+RP + +S+LS C+
Sbjct: 294 RDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCA 342
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/348 (22%), Positives = 145/348 (41%), Gaps = 66/348 (18%)
Query: 15 YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
+N+++SGY N L EA LF +M E+ V W
Sbjct: 51 WNSIVSGYFSNGLPKEARQLFDEMSERNV------------------VSW---------- 82
Query: 75 KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
N L++ Y+K + R +F+ +PE+ +++W AM+ GY Q G+
Sbjct: 83 -----------NGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAES 131
Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSV--GLEVEQQIQANGFGSNPFLNNALINM 192
L+ M V F G++ A + + V+ + + +I
Sbjct: 132 LFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTN----------MIGG 181
Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT-- 250
R G + +AR IFD M + VV+WT +I GY + +VA +LF+ M P+ T
Sbjct: 182 LCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVM------PEKTEV 235
Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
++ S+L + +G + E+F M K + M+ G G++++A + +
Sbjct: 236 SWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIA-----CNAMIVGFGEVGEISKARRVFD- 289
Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLS 358
++ + D A W ++ A + K EL L ++ + + + L+S
Sbjct: 290 LMEDRDNATWRGMIKAYE-RKGFELEALDLFAQMQKQGVRPSFPSLIS 336
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 119/260 (45%), Gaps = 27/260 (10%)
Query: 94 KCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVG 153
+ G ++ RK FD + K + +WN+++SGY NGL +L+ EM V V++ G
Sbjct: 29 RIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNV----VSWNG 84
Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN----NALINMYARCGNLKKARAIFDGM 209
++S G + VE + N F P N A++ Y + G + +A ++F M
Sbjct: 85 LVS-----GYIKNRMIVEAR---NVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRM 136
Query: 210 PRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL 269
P + VSWT + GG G + A +L+D M D A +++ G D+
Sbjct: 137 PERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVK----DVVASTNMIGGLCREGRVDEAR 192
Query: 270 EYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKI 329
F M+ + + +T M+ + +++ A +L E M E W ++L +
Sbjct: 193 LIFDEMRERNVVT-----WTTMITGYRQNNRVDVARKLFEVM-PEKTEVSWTSMLLGYTL 246
Query: 330 HKNVELAELAFGKVIKLEPM 349
+E AE F +V+ ++P+
Sbjct: 247 SGRIEDAE-EFFEVMPMKPV 265
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGI 245
I+ +R G + +AR FD + K + SW +I+ GY +G + A QLFDEM + +
Sbjct: 24 ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNV 79
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 377 bits (969), Expect = e-104, Method: Compositional matrix adjust.
Identities = 203/548 (37%), Positives = 307/548 (56%), Gaps = 49/548 (8%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
V +N ++SG+ + EAV +F K+ G + VT+ +LP D L +G H
Sbjct: 218 VSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGY 277
Query: 73 CVKFGLDLDFSVGNCLMTMYVKCGSV-------------------------------DYG 101
+K GL D V + ++ MY K G V D
Sbjct: 278 VIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKA 337
Query: 102 RKLFD----QVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSS 157
++F+ Q E +++W ++I+G AQNG LEL+REM+ GV P+ VT +L +
Sbjct: 338 LEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPA 397
Query: 158 CAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSW 217
C ++ A G N + +ALI+MYA+CG + ++ +F+ MP K +V W
Sbjct: 398 CGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCW 457
Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
+++ G+ +HG + + +F+ ++++ ++PD +F S+LSAC GLTD+G +YF M
Sbjct: 458 NSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSE 517
Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
+YG++P EHY+CMV+LLGRAG+L EA +LI+ M EPD VWGALL +C++ NV+LAE
Sbjct: 518 EYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAE 577
Query: 338 LAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRV 397
+A K+ LEP N G YVLLSNIY+ + +R M LKK+PG S++++K RV
Sbjct: 578 IAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRV 637
Query: 398 HLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQKNSEEHLNDTEV---------H 448
+ + GD++H Q +I +D++ ++ K + N + L+D E H
Sbjct: 638 YTLLAGDKSHPQIDQITEKMDEISKEMR-----KSGHRPNLDFALHDVEEQEQEQMLWGH 692
Query: 449 SEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSG 508
SEKLA+ FG++NT GT + V+KNLRICGDCH IK +S R+ +RD RFHHFK G
Sbjct: 693 SEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDG 752
Query: 509 FCSCKDYW 516
CSC D+W
Sbjct: 753 ICSCGDFW 760
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 99/441 (22%), Positives = 189/441 (42%), Gaps = 74/441 (16%)
Query: 15 YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
+++LI L ++++ +F +M G+ +S + L +C + +G HC+
Sbjct: 84 FSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSC 143
Query: 75 KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
GLD+D V + MY++CG + RK+FD++ +K ++T +A++ YA+ G V+
Sbjct: 144 VSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVR 203
Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF--------------G 180
+ EM+S G+ + V++ G+LS G H + + Q+I GF G
Sbjct: 204 ILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVG 263
Query: 181 SNPFLN---------------------NALINMYARCGN--------------------- 198
+ LN +A+I+MY + G+
Sbjct: 264 DSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNA 323
Query: 199 ----------LKKARAIFDGMPRKT----VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSG 244
+ KA +F+ +T VVSWT+II G +G A++LF EM +G
Sbjct: 324 YITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAG 383
Query: 245 IRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEA 304
++P+ S+L AC + G +G + L + ++D+ + G++N +
Sbjct: 384 VKPNHVTIPSMLPACGNIAALGHG-RSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLS 442
Query: 305 LELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI--KLEPMNTGYYVLLSNIYS 362
+++ +M+ + W +L+ +H + F ++ +L+P + LLS
Sbjct: 443 -QIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQ 501
Query: 363 EARNLDGIMRVRMMMRERRLK 383
+G +MM E +K
Sbjct: 502 VGLTDEGWKYFKMMSEEYGIK 522
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 106/233 (45%), Gaps = 1/233 (0%)
Query: 70 HCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLA 129
H +K G D + L+ Y + + +P+ + +++++I + L
Sbjct: 38 HARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLF 97
Query: 130 THVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNAL 189
T + ++ M S G+ PD+ + CA L A VG ++ +G + F+ ++
Sbjct: 98 TQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSM 157
Query: 190 INMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
+MY RCG + AR +FD M K VV+ +A++ Y G E V++ EM SGI +
Sbjct: 158 FHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANI 217
Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLN 302
++ +LS + +G + + F + + G P + ++ +G + LN
Sbjct: 218 VSWNGILSGFNRSGYHKEAVVMFQKI-HHLGFCPDQVTVSSVLPSVGDSEMLN 269
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/511 (37%), Positives = 293/511 (57%), Gaps = 15/511 (2%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
+ + +IS Y + +A+ L M V N T +L C + + HC
Sbjct: 128 ISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM---LHCG 184
Query: 73 CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
+K GL+ D V + L+ ++ K G + +FD++ I WN++I G+AQN +
Sbjct: 185 IIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVA 244
Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
LEL++ MK G + T VL +C L +G++ I + + LNNAL++M
Sbjct: 245 LELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDM 302
Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
Y +CG+L+ A +F+ M + V++W+ +I G +G+ + A++LF+ M SG +P+
Sbjct: 303 YCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITI 362
Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
V VL ACSHAGL + G YF MK YG+ P EHY CM+DLLG+AG+L++A++L+ M
Sbjct: 363 VGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEME 422
Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
EPD W LLGAC++ +N+ LAE A KVI L+P + G Y LLSNIY+ ++ D +
Sbjct: 423 CEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEE 482
Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
+R MR+R +KK+PG S++E+ ++H F++GD +H Q VE+ + KL L+ G
Sbjct: 483 IRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSK---KLNQLIHRLTGIGY 539
Query: 433 SDQKN-------SEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKL 485
+ N E+ + HSEKLA+AFG++ I + KNLRICGDCH+F KL
Sbjct: 540 VPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKL 599
Query: 486 VSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
SK+ R ++RD R+HHF+ G CSC DYW
Sbjct: 600 ASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 123/241 (51%), Gaps = 9/241 (3%)
Query: 86 NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
N L+ MYVK ++ +LFDQ+P++ +I+W MIS Y++ + LEL M V
Sbjct: 100 NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVR 159
Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
P+ T+ VL SC G V + + I G S+ F+ +ALI+++A+ G + A ++
Sbjct: 160 PNVYTYSSVLRSCN--GMSDVRM-LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSV 216
Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
FD M + W +IIGG+ + +VA++LF M ++G + SVL AC+ L
Sbjct: 217 FDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALL 276
Query: 266 DKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
+ G++ + + +K L +VD+ + G L +AL + M E D W ++
Sbjct: 277 ELGMQAHVHIVKYDQDLILN----NALVDMYCKCGSLEDALRVFNQM-KERDVITWSTMI 331
Query: 325 G 325
Sbjct: 332 S 332
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 107/216 (49%), Gaps = 11/216 (5%)
Query: 134 ELYREMKSL------GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN 187
+L R MK++ G+ D+ T+ ++ C A G + + + NG FL N
Sbjct: 41 DLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVN 100
Query: 188 ALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRP 247
LINMY + L A +FD MP++ V+SWT +I Y + A++L ML+ +RP
Sbjct: 101 VLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRP 160
Query: 248 DGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALEL 307
+ + SVL +C+ G++D + + K GL+ + ++D+ + G+ +AL +
Sbjct: 161 NVYTYSSVLRSCN--GMSD--VRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSV 216
Query: 308 IESMLVEPDGAVWGALLGACKIHKNVELAELAFGKV 343
+ M V D VW +++G + ++A F ++
Sbjct: 217 FDEM-VTGDAIVWNSIIGGFAQNSRSDVALELFKRM 251
>sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein At2g41080
OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2
Length = 650
Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust.
Identities = 203/522 (38%), Positives = 307/522 (58%), Gaps = 9/522 (1%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
VFDE + LT +NA+I+G + E +SLF +M G + T+ +
Sbjct: 132 VFDE-MPDRKLTT-WNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGL 189
Query: 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
+ +G H +K+GL+LD V + L MY++ G + G + +P + L+ WN +I
Sbjct: 190 RSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLI 249
Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFG 180
G AQNG VL LY+ MK G P+ +TFV VLSSC+ L G ++ + G
Sbjct: 250 MGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGAS 309
Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
S + ++LI+MY++CG L A F + V W+++I YG HG G+ A++LF+ M
Sbjct: 310 SVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTM 369
Query: 241 L-KSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAG 299
++ + + AF+++L ACSH+GL DKGLE F M KYG +PG +HYTC+VDLLGRAG
Sbjct: 370 AEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAG 429
Query: 300 QLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSN 359
L++A +I SM ++ D +W LL AC IHKN E+A+ F ++++++P ++ YVLL+N
Sbjct: 430 CLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLAN 489
Query: 360 IYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDK 419
+++ A+ + VR MR++ +KK+ G S+ E KG VH F +GDR+ ++ EIY L +
Sbjct: 490 VHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKE 549
Query: 420 LENLVQEHDGTKRSDQK-----NSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLR 474
L L + G K + EE +D HSEKLA+AF ++ G I ++KNLR
Sbjct: 550 L-TLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLR 608
Query: 475 ICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
+C DCH+ K +S I +R+ +RD +RFHHF +G CSC DYW
Sbjct: 609 VCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 650
Score = 129 bits (323), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 135/282 (47%), Gaps = 2/282 (0%)
Query: 81 DFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMK 140
++ N L+ YV+ G + RK+FD++P++ L TWNAMI+G Q L L+REM
Sbjct: 109 NYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMH 168
Query: 141 SLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLK 200
LG PD T V S A L + S+G ++ G + +N++L +MY R G L+
Sbjct: 169 GLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQ 228
Query: 201 KARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACS 260
+ MP + +V+W +I G +G E + L+ M SG RP+ FV+VLS+CS
Sbjct: 229 DGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCS 288
Query: 261 HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVW 320
+ +G + + K G + ++ + + G L +A + S + D +W
Sbjct: 289 DLAIRGQG-QQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAF-SEREDEDEVMW 346
Query: 321 GALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYS 362
+++ A H + A F + + M L+ +Y+
Sbjct: 347 SSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYA 388
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 86/215 (40%), Gaps = 35/215 (16%)
Query: 142 LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA------- 194
L + + F + SC + G ++ + +GF S+ F+ N L++MY+
Sbjct: 38 LNIFTNTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPS 97
Query: 195 ------------------------RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHG 230
R G+L AR +FD MP + + +W A+I G
Sbjct: 98 AVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFN 157
Query: 231 EVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGL-EYFYGMKNKYGLQPGPEHYT 289
E + LF EM G PD SV S AGL + + +G KYGL+ +
Sbjct: 158 EEGLSLFREMHGLGFSPDEYTLGSVFSGS--AGLRSVSIGQQIHGYTIKYGLELDLVVNS 215
Query: 290 CMVDLLGRAGQLNEALELIESMLVEPDGAVWGALL 324
+ + R G+L + +I SM V + W L+
Sbjct: 216 SLAHMYMRNGKLQDGEIVIRSMPVR-NLVAWNTLI 249
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 376 bits (965), Expect = e-103, Method: Compositional matrix adjust.
Identities = 206/543 (37%), Positives = 310/543 (57%), Gaps = 39/543 (7%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
V +N++ISG+ A+ +F KM R+ + + T+ +L C + L +G H
Sbjct: 244 VTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHS 303
Query: 72 ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQ------------------------ 107
V G D+ V N L++MY +CG V+ R+L +Q
Sbjct: 304 HIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDM 363
Query: 108 ---------VPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSC 158
+ ++ ++ W AMI GY Q+G + L+R M G P++ T +LS
Sbjct: 364 NQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVA 423
Query: 159 AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMP-RKTVVSW 217
+ L + S G ++ +G + ++NALI MYA+ GN+ A FD + + VSW
Sbjct: 424 SSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSW 483
Query: 218 TAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKN 277
T++I HGH E A++LF+ ML G+RPD +V V SAC+HAGL ++G +YF MK+
Sbjct: 484 TSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKD 543
Query: 278 KYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAE 337
+ P HY CMVDL GRAG L EA E IE M +EPD WG+LL AC++HKN++L +
Sbjct: 544 VDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGK 603
Query: 338 LAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRV 397
+A +++ LEP N+G Y L+N+YS + ++R M++ R+KK+ G+S++E+K +V
Sbjct: 604 VAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKV 663
Query: 398 HLFMVGDRNHHQTVEIYRMLDKLENLVQE--HDGTKRSDQKNSEEHLNDTEV--HSEKLA 453
H+F V D H + EIY + K+ + +++ + S + EE + + + HSEKLA
Sbjct: 664 HVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLA 723
Query: 454 IAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCK 513
IAFG+I+T T + +MKNLR+C DCH IK +SK+V R+ IVRD TRFHHFK GFCSC+
Sbjct: 724 IAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCR 783
Query: 514 DYW 516
DYW
Sbjct: 784 DYW 786
Score = 135 bits (339), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 102/390 (26%), Positives = 164/390 (42%), Gaps = 66/390 (16%)
Query: 12 TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
+V + +I GY +A+ + G M ++G+E T+ +L + G H
Sbjct: 111 SVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHS 170
Query: 72 ICVKFGLDLDFSVGNCLMTMYVKC-------------------------------GSVDY 100
VK GL + SV N L+ MY KC G +D
Sbjct: 171 FIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDL 230
Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM-KSLGVCPDAVTFVGVLSSCA 159
F+Q+ E+ ++TWN+MISG+ Q G L+++ +M + + PD T VLS+CA
Sbjct: 231 AMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACA 290
Query: 160 HLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKAR---------------- 203
+L +G ++ I GF + + NALI+MY+RCG ++ AR
Sbjct: 291 NLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGF 350
Query: 204 -AIFDG----------------MPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
A+ DG + + VV+WTA+I GY HG A+ LF M+ G R
Sbjct: 351 TALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQR 410
Query: 247 PDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALE 306
P+ ++LS S G + +G K G ++ + +AG + A
Sbjct: 411 PNSYTLAAMLSVASSLASLSHG-KQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASR 469
Query: 307 LIESMLVEPDGAVWGALLGACKIHKNVELA 336
+ + E D W +++ A H + E A
Sbjct: 470 AFDLIRCERDTVSWTSMIIALAQHGHAEEA 499
Score = 99.0 bits (245), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 143/331 (43%), Gaps = 50/331 (15%)
Query: 86 NCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVC 145
N +++ Y K G +D + FDQ+P++ ++W MI GY G + + +M G+
Sbjct: 84 NTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIE 143
Query: 146 PDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAI 205
P T VL+S A G +V I G N ++N+L+NMYA+CG+ A+ +
Sbjct: 144 PTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFV 203
Query: 206 FDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLT 265
FD M + + SW A+I + G ++A+ F++M + I + S++S + G
Sbjct: 204 FDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDI----VTWNSMISGFNQRGYD 259
Query: 266 DKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLG 325
+ L+ F M + L+ PD ++L
Sbjct: 260 LRALDIFSKM--------------------------------LRDSLLSPDRFTLASVLS 287
Query: 326 ACKIHKNVELAELAFGKVIKLEPMNTGYY---VLLSNIYSEARNLDGIMRVRMMMRERRL 382
AC L +L GK I + TG+ ++L+ + S G+ R ++ +R
Sbjct: 288 AC-----ANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGT 342
Query: 383 K--KDPGYSYVELKGRVHLFMVGDRNHHQTV 411
K K G++ + L G + L GD N + +
Sbjct: 343 KDLKIEGFTAL-LDGYIKL---GDMNQAKNI 369
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/281 (19%), Positives = 108/281 (38%), Gaps = 45/281 (16%)
Query: 145 CPDAVTFVGVLSSCAHLGAHSVGLE--------VEQQIQANGFGSNPFLNNALINMYARC 196
P ++ +L C +L SV V ++ +G + +L N L+N+Y++
Sbjct: 3 APVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKT 62
Query: 197 GNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE----------------- 239
G AR +FD MP +T SW ++ Y G + + FD+
Sbjct: 63 GYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYK 122
Query: 240 --------------MLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGP 285
M+K GI P +VL++ + + G + + K GL+
Sbjct: 123 NIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETG-KKVHSFIVKLGLRGNV 181
Query: 286 EHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK 345
++++ + G A + + M+V D + W A++ +H V +LA + +
Sbjct: 182 SVSNSLLNMYAKCGDPMMAKFVFDRMVVR-DISSWNAMIA---LHMQVGQMDLAMAQFEQ 237
Query: 346 LEPMN-TGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKD 385
+ + + ++S +L + M+R+ L D
Sbjct: 238 MAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPD 278
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 376 bits (965), Expect = e-103, Method: Compositional matrix adjust.
Identities = 211/508 (41%), Positives = 292/508 (57%), Gaps = 15/508 (2%)
Query: 15 YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
+N +I+GY + +A LF M E+ E++ M+ C D L H
Sbjct: 158 WNTMITGYARRGEMEKARELFYSMMEKN-EVSWNAMISGYIECGD-----LEKASHFF-- 209
Query: 75 KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLF-DQVPEKGLITWNAMISGYAQNGLATHVL 133
K ++T Y+K V+ +F D K L+TWNAMISGY +N L
Sbjct: 210 KVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGL 269
Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
+L+R M G+ P++ L C+ L A +G ++ Q + + ++ +LI+MY
Sbjct: 270 KLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMY 329
Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
+CG L A +F+ M +K VV+W A+I GY HG+ + A+ LF EM+ + IRPD FV
Sbjct: 330 CKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFV 389
Query: 254 SVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLV 313
+VL AC+HAGL + G+ YF M Y ++P P+HYTCMVDLLGRAG+L EAL+LI SM
Sbjct: 390 AVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPF 449
Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
P AV+G LLGAC++HKNVELAE A K+++L N YV L+NIY+ + + RV
Sbjct: 450 RPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARV 509
Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRS 433
R M+E + K PGYS++E++ +VH F DR H + I++ L K + G K
Sbjct: 510 RKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKL-KELEKKMKLAGYKPE 568
Query: 434 DQ---KNSEEHLNDTEV--HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
+ N EE + + HSEKLA+AFG I G++I V KNLRICGDCH IK +S+
Sbjct: 569 LEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISE 628
Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKDYW 516
I R+ IVRD TRFHHFK G CSC DYW
Sbjct: 629 IEKREIIVRDTTRFHHFKDGSCSCGDYW 656
Score = 129 bits (324), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 123/232 (53%), Gaps = 2/232 (0%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
V +NA+ISGYV NS + + LF M E+G+ NS + L C + L LG H I
Sbjct: 250 VTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQI 309
Query: 73 CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
K L D + L++MY KCG + KLF+ + +K ++ WNAMISGYAQ+G A
Sbjct: 310 VSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKA 369
Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLE-VEQQIQANGFGSNPFLNNALIN 191
L L+REM + PD +TFV VL +C H G ++G+ E ++ P +++
Sbjct: 370 LCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVD 429
Query: 192 MYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLK 242
+ R G L++A + MP R + ++G +H + E+A +++L+
Sbjct: 430 LLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQ 481
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 101/393 (25%), Positives = 179/393 (45%), Gaps = 34/393 (8%)
Query: 16 NALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLL-PICVDPGYLWLGMCCHCICV 74
N +I+ V + + A+ +F MR + N++T LL I DP + M H +
Sbjct: 65 NKIIARCVRSGDIDGALRVFHGMRAK----NTITWNSLLIGISKDPSRM---MEAHQLFD 117
Query: 75 KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
+ FS N +++ YV+ + + + FD++P K +WN MI+GYA+ G E
Sbjct: 118 EIPEPDTFSY-NIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARE 176
Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN----NALI 190
L+ M + V++ ++S G + + ++ F P A+I
Sbjct: 177 LFYSMME----KNEVSWNAMISGYIECG--------DLEKASHFFKVAPVRGVVAWTAMI 224
Query: 191 NMYARCGNLKKARAIFDGMP-RKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
Y + ++ A A+F M K +V+W A+I GY + E ++LF ML+ GIRP+
Sbjct: 225 TGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNS 284
Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIE 309
+ S L CS G + + + +K L T ++ + + G+L +A +L E
Sbjct: 285 SGLSSALLGCSELSALQLGRQ-IHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFE 343
Query: 310 SMLVEPDGAVWGALLGACKIHKNVELAELAFGKVI--KLEP-MNTGYYVLLSNIYSEARN 366
M + D W A++ H N + A F ++I K+ P T VLL+ ++ N
Sbjct: 344 VM-KKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVN 402
Query: 367 LDGIMRVRMMMRERRLKKDPGY--SYVELKGRV 397
+ G+ M+R+ +++ P + V+L GR
Sbjct: 403 I-GMAYFESMVRDYKVEPQPDHYTCMVDLLGRA 434
>sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920
OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1
Length = 606
Score = 375 bits (964), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/510 (37%), Positives = 304/510 (59%), Gaps = 5/510 (0%)
Query: 12 TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
T +N +I GYV EA+ + +M ++G E ++ T CLL C + G H
Sbjct: 97 TFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHG 156
Query: 72 ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
K GL+ D V N L+ MY +CG ++ +F+++ K +W++M+S A G+ +
Sbjct: 157 QVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSE 216
Query: 132 VLELYREMKS-LGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
L L+R M S + + V L +CA+ GA ++G+ + + N N + +L+
Sbjct: 217 CLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLV 276
Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
+MY +CG L KA IF M ++ ++++A+I G +HG GE A+++F +M+K G+ PD
Sbjct: 277 DMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHV 336
Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
+VSVL+ACSH+GL +G F M + ++P EHY C+VDLLGRAG L EALE I+S
Sbjct: 337 VYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQS 396
Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
+ +E + +W L C++ +N+EL ++A +++KL N G Y+L+SN+YS+ + D +
Sbjct: 397 IPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDDV 456
Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQ----E 426
R R + + LK+ PG+S VELKG+ H F+ DR+H + EIY+ML ++E ++
Sbjct: 457 ARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQLKFEGYS 516
Query: 427 HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
D T+ + EE + HS+K+AIAFG++ T PG+ I + +NLR+C DCH + K +
Sbjct: 517 PDLTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSIIKIARNLRMCSDCHTYTKKI 576
Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
S I +R+ +VRD RFH FK G CSCKDYW
Sbjct: 577 SMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 132/266 (49%), Gaps = 7/266 (2%)
Query: 97 SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLS 156
S++Y +F + + +N MI GY L Y EM G PD T+ +L
Sbjct: 81 SMNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLK 140
Query: 157 SCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVS 216
+C L + G ++ Q+ G ++ F+ N+LINMY RCG ++ + A+F+ + KT S
Sbjct: 141 ACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAAS 200
Query: 217 WTAIIGGYGIHGHGEVAVQLFDEML-KSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYG 274
W++++ G + LF M ++ ++ + + VS L AC++ G + G+ + +
Sbjct: 201 WSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFL 260
Query: 275 MKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVE 334
++N L + T +VD+ + G L++AL + + M + + + A++ +H E
Sbjct: 261 LRNISELNIIVQ--TSLVDMYVKCGCLDKALHIFQKM-EKRNNLTYSAMISGLALHGEGE 317
Query: 335 LAELAFGKVIK--LEPMNTGYYVLLS 358
A F K+IK LEP + Y +L+
Sbjct: 318 SALRMFSKMIKEGLEPDHVVYVSVLN 343
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust.
Identities = 203/554 (36%), Positives = 311/554 (56%), Gaps = 52/554 (9%)
Query: 15 YNALISGYVLNSLVSE--AVSLFGKM-REQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
+N +I G+ + A++LF +M ++ VE N T +L C G + G H
Sbjct: 93 WNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHG 152
Query: 72 ICVKFGLDLDFSVGNCLMTMYVKCG----------------------------------- 96
+ +K+G D V + L+ MYV CG
Sbjct: 153 LALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWN 212
Query: 97 ----------SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCP 146
R LFD++ ++ +++WN MISGY+ NG +E++REMK + P
Sbjct: 213 VMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRP 272
Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF 206
+ VT V VL + + LG+ +G + + +G + L +ALI+MY++CG ++KA +F
Sbjct: 273 NYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVF 332
Query: 207 DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTD 266
+ +PR+ V++W+A+I G+ IHG A+ F +M ++G+RP A++++L+ACSH GL +
Sbjct: 333 ERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVE 392
Query: 267 KGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGA 326
+G YF M + GL+P EHY CMVDLLGR+G L+EA E I +M ++PD +W ALLGA
Sbjct: 393 EGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGA 452
Query: 327 CKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDP 386
C++ NVE+ + ++ + P ++G YV LSN+Y+ N + +R+ M+E+ ++KDP
Sbjct: 453 CRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDP 512
Query: 387 GYSYVELKGRVHLFMVGDRNHHQTVEIYRML----DKLENLVQEHDGTKRSDQKNSEEHL 442
G S +++ G +H F+V D +H + EI ML DKL T+ E+
Sbjct: 513 GCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKE 572
Query: 443 NDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRF 502
N HSEK+A AFG+I+TSPG I ++KNLRIC DCH IKL+SK+ R+ VRD RF
Sbjct: 573 NVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRF 632
Query: 503 HHFKSGFCSCKDYW 516
HHF+ G CSC DYW
Sbjct: 633 HHFQDGSCSCMDYW 646
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 139/269 (51%), Gaps = 3/269 (1%)
Query: 12 TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
V +N +ISGY LN +AV +F +M++ + N VT++ +LP G L LG H
Sbjct: 239 VVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHL 298
Query: 72 ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
G+ +D +G+ L+ MY KCG ++ +F+++P + +ITW+AMI+G+A +G A
Sbjct: 299 YAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGD 358
Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLE-VEQQIQANGFGSNPFLNNALI 190
++ + +M+ GV P V ++ +L++C+H G G Q + +G ++
Sbjct: 359 AIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMV 418
Query: 191 NMYARCGNLKKARAIFDGMPRKT-VVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDG 249
++ R G L +A MP K V W A++G + G+ E+ ++ + +L + D
Sbjct: 419 DLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVAN-ILMDMVPHDS 477
Query: 250 TAFVSVLSACSHAGLTDKGLEYFYGMKNK 278
A+V++ + + G + E MK K
Sbjct: 478 GAYVALSNMYASQGNWSEVSEMRLRMKEK 506
Score = 115 bits (288), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 138/312 (44%), Gaps = 52/312 (16%)
Query: 97 SVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLEL---YREMKSLGVCPDAVTFVG 153
+DY K+F+Q+P++ +WN +I G++++ ++ + Y M V P+ TF
Sbjct: 74 DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPS 133
Query: 154 VLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARA--------- 204
VL +CA G G ++ GFG + F+ + L+ MY CG +K AR
Sbjct: 134 VLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEK 193
Query: 205 ------------------------------------IFDGMPRKTVVSWTAIIGGYGIHG 228
+FD M +++VVSW +I GY ++G
Sbjct: 194 DMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNG 253
Query: 229 HGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHY 288
+ AV++F EM K IRP+ VSVL A S G + G E+ + G++
Sbjct: 254 FFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELG-EWLHLYAEDSGIRIDDVLG 312
Query: 289 TCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAFGKVIK--L 346
+ ++D+ + G + +A+ + E + E + W A++ IH A F K+ + +
Sbjct: 313 SALIDMYSKCGIIEKAIHVFERLPRE-NVITWSAMINGFAIHGQAGDAIDCFCKMRQAGV 371
Query: 347 EPMNTGYYVLLS 358
P + Y LL+
Sbjct: 372 RPSDVAYINLLT 383
>sp|O49619|PP350_ARATH Pentatricopeptide repeat-containing protein At4g35130,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=3
SV=1
Length = 804
Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/510 (37%), Positives = 294/510 (57%), Gaps = 10/510 (1%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQ-GVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
V +N +I Y N V++A F KM EQ G++ + +T + LLP + G H
Sbjct: 299 VAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASA----ILEGRTIHG 354
Query: 72 ICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATH 131
++ G + L+ MY +CG + +FD++ EK +I+WN++I+ Y QNG
Sbjct: 355 YAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYS 414
Query: 132 VLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALIN 191
LEL++E+ + PD+ T +L + A + S G E+ I + + SN + N+L++
Sbjct: 415 ALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVH 474
Query: 192 MYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTA 251
MYA CG+L+ AR F+ + K VVSW +II Y +HG G ++V LF EM+ S + P+ +
Sbjct: 475 MYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKST 534
Query: 252 FVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
F S+L+ACS +G+ D+G EYF MK +YG+ PG EHY CM+DL+GR G + A +E M
Sbjct: 535 FASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEM 594
Query: 312 LVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIM 371
P +WG+LL A + HK++ +AE A ++ K+E NTG YVLL N+Y+EA + +
Sbjct: 595 PFVPTARIWGSLLNASRNHKDITIAEFAAEQIFKMEHDNTGCYVLLLNMYAEAGRWEDVN 654
Query: 372 RVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTK 431
R++++M + + + S VE KG+ H+F GDR+H T +IY +LD + +V E D
Sbjct: 655 RIKLLMESKGISRTSSRSTVEAKGKSHVFTNGDRSHVATNKIYEVLDVVSRMVGEEDIYV 714
Query: 432 RSDQKNSEEHL-----NDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
+ E L N HS +LA FG+I+T G + V N RIC CH F++
Sbjct: 715 HCVSRLRPETLVKSRSNSPRRHSVRLATCFGLISTETGRRVTVRNNTRICRKCHEFLEKA 774
Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
S++ R+ +V D+ FHHF +G CSC +YW
Sbjct: 775 SRLTRREIVVGDSKIFHHFSNGRCSCGNYW 804
Score = 139 bits (351), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 92/329 (27%), Positives = 167/329 (50%), Gaps = 12/329 (3%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDP 60
+FDE K+ +N +I G+ L EAV + +M GV+ ++ T ++
Sbjct: 86 LFDEMNKAD--AFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAGI 143
Query: 61 GYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMI 120
L G H + +K G D V N L+++Y+K G K+F+++PE+ +++WN+MI
Sbjct: 144 SSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMI 203
Query: 121 SGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVE-QQIQANGF 179
SGY G L L++EM G PD + + L +C+H+ + +G E+ +++
Sbjct: 204 SGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIE 263
Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
+ + ++++MY++ G + A IF+GM ++ +V+W +IG Y +G A F +
Sbjct: 264 TGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQK 323
Query: 240 ML-KSGIRPDGTAFVSVLSACS-HAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGR 297
M ++G++PD +++L A + G T G Y M+ G P T ++D+ G
Sbjct: 324 MSEQNGLQPDVITSINLLPASAILEGRTIHG----YAMRR--GFLPHMVLETALIDMYGE 377
Query: 298 AGQLNEALELIESMLVEPDGAVWGALLGA 326
GQL A E+I + E + W +++ A
Sbjct: 378 CGQLKSA-EVIFDRMAEKNVISWNSIIAA 405
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 141/273 (51%), Gaps = 9/273 (3%)
Query: 103 KLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLG 162
+LFD++ + WN MI G+ GL ++ Y M GV D T+ V+ S A +
Sbjct: 85 QLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAGIS 144
Query: 163 AHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIG 222
+ G ++ + GF S+ ++ N+LI++Y + G A +F+ MP + +VSW ++I
Sbjct: 145 SLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMIS 204
Query: 223 GYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKYGL 281
GY G G ++ LF EMLK G +PD + +S L ACSH G E + + ++++ +
Sbjct: 205 GYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSR--I 262
Query: 282 QPGPEH-YTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
+ G T ++D+ + G+++ A E I + +++ + W ++G + V A L F
Sbjct: 263 ETGDVMVMTSILDMYSKYGEVSYA-ERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCF 321
Query: 341 GKVIK---LEP-MNTGYYVLLSNIYSEARNLDG 369
K+ + L+P + T +L ++ E R + G
Sbjct: 322 QKMSEQNGLQPDVITSINLLPASAILEGRTIHG 354
Score = 35.8 bits (81), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 7/147 (4%)
Query: 181 SNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEM 240
++P L AL +A ++ A +FD M + W +I G+ G AVQ + M
Sbjct: 63 NDPALTRAL-RGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRM 121
Query: 241 LKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTC--MVDLLGRA 298
+ +G++ D + V+ + + ++G + + M K G + Y C ++ L +
Sbjct: 122 VFAGVKADTFTYPFVIKSVAGISSLEEG-KKIHAMVIKLGFV--SDVYVCNSLISLYMKL 178
Query: 299 GQLNEALELIESMLVEPDGAVWGALLG 325
G +A ++ E M E D W +++
Sbjct: 179 GCAWDAEKVFEEM-PERDIVSWNSMIS 204
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/510 (37%), Positives = 296/510 (58%), Gaps = 7/510 (1%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
V +N++ GY + E SLF ++ E G+ ++ T LL C L G HC+
Sbjct: 95 VIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCL 154
Query: 73 CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
+K GLD + V L+ MY +C VD R +FD++ E ++ +NAMI+GYA+
Sbjct: 155 SMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEA 214
Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
L L+REM+ + P+ +T + VLSSCA LG+ +G + + + + F +N ALI+M
Sbjct: 215 LSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDM 274
Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
+A+CG+L A +IF+ M K +W+A+I Y HG E ++ +F+ M ++PD F
Sbjct: 275 FAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITF 334
Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
+ +L+ACSH G ++G +YF M +K+G+ P +HY MVDLL RAG L +A E I+ +
Sbjct: 335 LGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLP 394
Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
+ P +W LL AC H N++LAE ++ +L+ + G YV+LSN+Y+ + + +
Sbjct: 395 ISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDS 454
Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLD------KLENLVQE 426
+R +M++R+ K PG S +E+ VH F GD T +++R LD KL V +
Sbjct: 455 LRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPD 514
Query: 427 HDGTKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLV 486
++ + E+ + HSEKLAI FG++NT PGT I V+KNLR+C DCH KL+
Sbjct: 515 TSMVVHANMNDQEKEIT-LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLI 573
Query: 487 SKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
S I R+ ++RD RFHHF+ G CSC D+W
Sbjct: 574 SLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603
Score = 122 bits (305), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 121/248 (48%), Gaps = 2/248 (0%)
Query: 96 GSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVL 155
S+ Y R LF+ + E ++ +N+M GY++ V L+ E+ G+ PD TF +L
Sbjct: 77 SSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLL 136
Query: 156 SSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVV 215
+CA A G ++ G N ++ LINMY C ++ AR +FD + VV
Sbjct: 137 KACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVV 196
Query: 216 SWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
+ A+I GY A+ LF EM ++P+ +SVLS+C+ G D G ++ +
Sbjct: 197 CYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLG-KWIHKY 255
Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVEL 335
K+ + T ++D+ + G L++A+ + E M + D W A++ A H E
Sbjct: 256 AKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYK-DTQAWSAMIVAYANHGKAEK 314
Query: 336 AELAFGKV 343
+ L F ++
Sbjct: 315 SMLMFERM 322
>sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2
SV=1
Length = 866
Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust.
Identities = 204/506 (40%), Positives = 299/506 (59%), Gaps = 7/506 (1%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
V + +ISGY N L +A+ + M + V+ + +T+ +L C G L G+ H +
Sbjct: 364 VSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKL 423
Query: 73 CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
+K L V N L+ MY KC +D +F +P K +I+W ++I+G N
Sbjct: 424 AIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEA 483
Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
L R+MK + + P+A+T L++CA +GA G E+ + G G + FL NAL++M
Sbjct: 484 LIFLRQMK-MTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDM 542
Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
Y RCG + A + F+ +K V SW ++ GY G G + V+LFD M+KS +RPD F
Sbjct: 543 YVRCGRMNTAWSQFNSQ-KKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITF 601
Query: 253 VSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESML 312
+S+L CS + + +GL YF M++ YG+ P +HY C+VDLLGRAG+L EA + I+ M
Sbjct: 602 ISLLCGCSKSQMVRQGLMYFSKMED-YGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMP 660
Query: 313 VEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMR 372
V PD AVWGALL AC+IH ++L EL+ + +L+ + GYY+LL N+Y++ + +
Sbjct: 661 VTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAK 720
Query: 373 VRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGTKR 432
VR MM+E L D G S+VE+KG+VH F+ D+ H QT EI +L+ + E TK
Sbjct: 721 VRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKMSEVGLTKI 780
Query: 433 SDQKNSEE-HLNDTEV---HSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSK 488
S+ + +E ++ E+ HSE+ AIAFG+INT PG I V KNL +C +CH +K +SK
Sbjct: 781 SESSSMDETEISRDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCHDTVKFISK 840
Query: 489 IVDRQFIVRDATRFHHFKSGFCSCKD 514
V R+ VRDA FHHFK G CSC D
Sbjct: 841 TVRREISVRDAEHFHHFKDGECSCGD 866
Score = 177 bits (449), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/257 (36%), Positives = 142/257 (55%), Gaps = 1/257 (0%)
Query: 15 YNALISGYVLNSLVSEAVSLFGKMRE-QGVEINSVTMLCLLPICVDPGYLWLGMCCHCIC 73
+N L+ GY EA+ L+ +M GV+ + T C+L C L G H
Sbjct: 163 WNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHV 222
Query: 74 VKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVL 133
V++G +LD V N L+TMYVKCG V R LFD++P + +I+WNAMISGY +NG+ L
Sbjct: 223 VRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGL 282
Query: 134 ELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMY 193
EL+ M+ L V PD +T V+S+C LG +G ++ + GF + + N+L MY
Sbjct: 283 ELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMY 342
Query: 194 ARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFV 253
G+ ++A +F M RK +VSWT +I GY + + A+ + M + ++PD
Sbjct: 343 LNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVA 402
Query: 254 SVLSACSHAGLTDKGLE 270
+VLSAC+ G D G+E
Sbjct: 403 AVLSACATLGDLDTGVE 419
Score = 148 bits (374), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 156/313 (49%), Gaps = 6/313 (1%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
+ +NA+ISGY N + E + LF MR V+ + +T+ ++ C G LG H
Sbjct: 263 ISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAY 322
Query: 73 CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
+ G +D SV N L MY+ GS KLF ++ K +++W MISGY N L
Sbjct: 323 VITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKA 382
Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINM 192
++ YR M V PD +T VLS+CA LG G+E+ + S + N LINM
Sbjct: 383 IDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINM 442
Query: 193 YARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAF 252
Y++C + KA IF +PRK V+SWT+II G ++ A+ +F +K ++P+
Sbjct: 443 YSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEAL-IFLRQMKMTLQPNAITL 501
Query: 253 VSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESM 311
+ L+AC+ G G E + + ++ GL + ++D+ R G++N A S
Sbjct: 502 TAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPN--ALLDMYVRCGRMNTAWSQFNSQ 559
Query: 312 LVEPDGAVWGALL 324
+ D W LL
Sbjct: 560 --KKDVTSWNILL 570
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 1/246 (0%)
Query: 19 ISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGL 78
+ G N + EA+ L M+E V ++ + L+ +C G + I +
Sbjct: 66 LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMS 125
Query: 79 DLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYRE 138
L +GN + M+V+ G++ +F ++ E+ L +WN ++ GYA+ G + LY
Sbjct: 126 SLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHR 185
Query: 139 MKSL-GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCG 197
M + GV PD TF VL +C + + G EV + G+ + + NALI MY +CG
Sbjct: 186 MLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCG 245
Query: 198 NLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLS 257
++K AR +FD MPR+ ++SW A+I GY +G ++LF M + PD SV+S
Sbjct: 246 DVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVIS 305
Query: 258 ACSHAG 263
AC G
Sbjct: 306 ACELLG 311
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 95/223 (42%), Gaps = 11/223 (4%)
Query: 120 ISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGF 179
+ G NG ++L M+ L V D FV ++ C A G +V ++
Sbjct: 66 LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMS 125
Query: 180 GSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDE 239
L NA + M+ R GNL A +F M + + SW ++GGY G+ + A+ L+
Sbjct: 126 SLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHR 185
Query: 240 MLK-SGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRA 298
ML G++PD F VL C +G E + +YG + + ++ + +
Sbjct: 186 MLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVV-RYGYELDIDVVNALITMYVKC 244
Query: 299 GQLNEALELIESMLVEPDGAVWGALL------GACKIHKNVEL 335
G + A L + M D W A++ G C H+ +EL
Sbjct: 245 GDVKSARLLFDRM-PRRDIISWNAMISGYFENGMC--HEGLEL 284
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/507 (37%), Positives = 304/507 (59%), Gaps = 5/507 (0%)
Query: 15 YNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCICV 74
+NALI G+ ++ ++ +M+ G+ +S T+ LL C L LG H +
Sbjct: 464 WNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFII 523
Query: 75 KFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLE 134
+ L+ D V ++++Y+ CG + + LFD + +K L++WN +I+GY QNG L
Sbjct: 524 RNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALG 583
Query: 135 LYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYA 194
++R+M G+ ++ + V +C+ L + +G E + + F+ +LI+MYA
Sbjct: 584 VFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYA 643
Query: 195 RCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVS 254
+ G++ ++ +F+G+ K+ SW A+I GYGIHG + A++LF+EM ++G PD F+
Sbjct: 644 KNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLG 703
Query: 255 VLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELI-ESMLV 313
VL+AC+H+GL +GL Y MK+ +GL+P +HY C++D+LGRAGQL++AL ++ E M
Sbjct: 704 VLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSE 763
Query: 314 EPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRV 373
E D +W +LL +C+IH+N+E+ E K+ +LEP YVLLSN+Y+ + + +V
Sbjct: 764 EADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKV 823
Query: 374 RMMMRERRLKKDPGYSYVELKGRVHLFMVGDR---NHHQTVEIYRMLD-KLENLVQEHDG 429
R M E L+KD G S++EL +V F+VG+R + ++ +L+ K+ + D
Sbjct: 824 RQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDT 883
Query: 430 TKRSDQKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKI 489
+ EE + HSEKLA+ +G+I TS GT I V KNLRIC DCH KL+SK+
Sbjct: 884 MSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKV 943
Query: 490 VDRQFIVRDATRFHHFKSGFCSCKDYW 516
++R+ +VRD RFHHFK+G CSC DYW
Sbjct: 944 MEREIVVRDNKRFHHFKNGVCSCGDYW 970
Score = 136 bits (343), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 160/322 (49%), Gaps = 8/322 (2%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQG--VEINSVTMLCLLPICVDPGYLWLGMCCH 70
V +N ++ G+ + +M G V+ + VT+L +P+C +L H
Sbjct: 359 VSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELH 418
Query: 71 CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
C +K + V N + Y KCGS+ Y +++F + K + +WNA+I G+AQ+
Sbjct: 419 CYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPR 478
Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
L+ + +MK G+ PD+ T +LS+C+ L + +G EV I N + F+ +++
Sbjct: 479 LSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVL 538
Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
++Y CG L +A+FD M K++VSW +I GY +G + A+ +F +M+ GI+ G
Sbjct: 539 SLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGI 598
Query: 251 AFVSVLSACSHAGLTDKGLE-YFYGMKNKYGLQPGPEHYTC-MVDLLGRAGQLNEALELI 308
+ + V ACS G E + Y +K+ L C ++D+ + G + ++ ++
Sbjct: 599 SMMPVFGACSLLPSLRLGREAHAYALKH---LLEDDAFIACSLIDMYAKNGSITQSSKVF 655
Query: 309 ESMLVEPDGAVWGALLGACKIH 330
L E A W A++ IH
Sbjct: 656 NG-LKEKSTASWNAMIMGYGIH 676
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 124/254 (48%), Gaps = 6/254 (2%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVE----INSVTMLCLLPICVDPGYLWLGMC 68
V +N++I + N E+ L G+M E+ + + T++ +LP+C + LG
Sbjct: 254 VSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKG 313
Query: 69 CHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGL 128
H VK LD + + N LM MY KCG + + +F K +++WN M+ G++ G
Sbjct: 314 VHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGD 373
Query: 129 ATHVLELYREMKSLG--VCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
++ R+M + G V D VT + + C H E+ F N +
Sbjct: 374 THGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVA 433
Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIR 246
NA + YA+CG+L A+ +F G+ KTV SW A+IGG+ +++ +M SG+
Sbjct: 434 NAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLL 493
Query: 247 PDGTAFVSVLSACS 260
PD S+LSACS
Sbjct: 494 PDSFTVCSLLSACS 507
Score = 122 bits (307), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 134/287 (46%), Gaps = 10/287 (3%)
Query: 1 VFDESIKSTHLTVCYNALISGYVLNSLVSEAVSLFGKM-REQGVEINSVTMLCLLPICVD 59
VFD +++S +L +NA+IS Y N L E + F +M + + T C++ C
Sbjct: 142 VFD-ALRSKNL-FQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAG 199
Query: 60 PGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAM 119
+ +G+ H + VK GL D VGN L++ Y G V +LFD +PE+ L++WN+M
Sbjct: 200 MSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSM 259
Query: 120 ISGYAQNGLATHVLELYREMKSL----GVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQ 175
I ++ NG + L EM PD T V VL CA +G V
Sbjct: 260 IRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAV 319
Query: 176 ANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQ 235
LNNAL++MY++CG + A+ IF K VVSW ++GG+ G
Sbjct: 320 KLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFD 379
Query: 236 LFDEMLKSG--IRPDGTAFVSVLSACSHAGLTDKGLE-YFYGMKNKY 279
+ +ML G ++ D ++ + C H E + Y +K ++
Sbjct: 380 VLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEF 426
Score = 122 bits (305), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 126/234 (53%), Gaps = 9/234 (3%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHCI 72
V +N +I+GY+ N A+ +F +M G+++ ++M+ + C L LG H
Sbjct: 563 VSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAY 622
Query: 73 CVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHV 132
+K L+ D + L+ MY K GS+ K+F+ + EK +WNAMI GY +GLA
Sbjct: 623 ALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEA 682
Query: 133 LELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNN--ALI 190
++L+ EM+ G PD +TF+GVL++C H G GL Q++++ FG P L + +I
Sbjct: 683 IKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSS-FGLKPNLKHYACVI 741
Query: 191 NMYARCGNLKKA-RAIFDGMPRKTVVS-WTAIIGGYGIHGHGE----VAVQLFD 238
+M R G L KA R + + M + V W +++ IH + E VA +LF+
Sbjct: 742 DMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFE 795
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 94/179 (52%), Gaps = 5/179 (2%)
Query: 88 LMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM-KSLGVCP 146
++TMY CGS D R +FD + K L WNA+IS Y++N L VLE + EM + + P
Sbjct: 126 IITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLP 185
Query: 147 DAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIF 206
D T+ V+ +CA + +GL V + G + F+ NAL++ Y G + A +F
Sbjct: 186 DHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLF 245
Query: 207 DGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKS----GIRPDGTAFVSVLSACSH 261
D MP + +VSW ++I + +G E + L EM++ PD V+VL C+
Sbjct: 246 DIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAR 304
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 12 TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGM-CCH 70
T +NA+I GY ++ L EA+ LF +M+ G + +T L +L C G + G+
Sbjct: 663 TASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLD 722
Query: 71 CICVKFGLDLDFSVGNCLMTMYVKCGSVDYG-RKLFDQVPEKGLI-TWNAMIS 121
+ FGL + C++ M + G +D R + +++ E+ + W +++S
Sbjct: 723 QMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLS 775
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust.
Identities = 197/541 (36%), Positives = 287/541 (53%), Gaps = 36/541 (6%)
Query: 12 TVCYNALISGYVLNSLVSEAVSLFGKMREQGVEINSVTMLCLLPICVDPGYLWLGMCCHC 71
T +N +I G+ + ++ L+ +M N+ T LL C + H
Sbjct: 80 TFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHA 139
Query: 72 ICVKFGLDLDFSVGNCLMTMY-------------------------------VKCGSVDY 100
K G + D N L+ Y VK G +D
Sbjct: 140 QITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDI 199
Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREMKSLGVCPDAVTFVGVLSSCAH 160
LF ++ EK I+W MISGY Q + L+L+ EM++ V PD V+ LS+CA
Sbjct: 200 ALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQ 259
Query: 161 LGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWTAI 220
LGA G + + + L LI+MYA+CG +++A +F + +K+V +WTA+
Sbjct: 260 LGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTAL 319
Query: 221 IGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNKYG 280
I GY HGHG A+ F EM K GI+P+ F +VL+ACS+ GL ++G FY M+ Y
Sbjct: 320 ISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYN 379
Query: 281 LQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIHKNVELAELAF 340
L+P EHY C+VDLLGRAG L+EA I+ M ++P+ +WGALL AC+IHKN+EL E
Sbjct: 380 LKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIG 439
Query: 341 GKVIKLEPMNTGYYVLLSNIYSEARNLDGIMRVRMMMRERRLKKDPGYSYVELKGRVHLF 400
+I ++P + G YV +NI++ + D R +M+E+ + K PG S + L+G H F
Sbjct: 440 EILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEF 499
Query: 401 MVGDRNHHQTVEIYRMLDKLENLVQEHDGTKRSDQK-----NSEEHLNDTEVHSEKLAIA 455
+ GDR+H + +I + ++E+ ++ + +E HSEKLAI
Sbjct: 500 LAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAIT 559
Query: 456 FGIINTSPGTEIVVMKNLRICGDCHLFIKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDY 515
+G+I T PGT I +MKNLR+C DCH KL+SKI R ++RD TRFHHF+ G CSC DY
Sbjct: 560 YGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDY 619
Query: 516 W 516
W
Sbjct: 620 W 620
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 129/295 (43%), Gaps = 36/295 (12%)
Query: 70 HCICVKFGLDLDFSVGNCLMTMYVKCGSVD---YGRKLFDQVPEKGLITWNAMISGYAQN 126
H +K GL D ++ + S D Y + +FD WN MI G++ +
Sbjct: 34 HARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCS 93
Query: 127 GLATHVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLN 186
L LY+ M +A TF +L +C++L A ++ QI G+ ++ +
Sbjct: 94 DEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAV 153
Query: 187 NALINMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEV-------------- 232
N+LIN YA GN K A +FD +P VSW ++I GY G ++
Sbjct: 154 NSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAI 213
Query: 233 -----------------AVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGM 275
A+QLF EM S + PD + + LSAC+ G ++G ++ +
Sbjct: 214 SWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQG-KWIHSY 272
Query: 276 KNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
NK ++ ++D+ + G++ EALE+ +++ + A W AL+ H
Sbjct: 273 LNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQA-WTALISGYAYH 326
>sp|Q9FND6|PP411_ARATH Pentatricopeptide repeat-containing protein At5g40410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2
SV=1
Length = 608
Score = 369 bits (946), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/514 (37%), Positives = 292/514 (56%), Gaps = 13/514 (2%)
Query: 13 VCYNALISGYVLNSLVSEAVSLFGKM--REQGVEINSVTMLCLLPICVDPGYLWLGMCCH 70
V +N+LISGY + + + +M E G N VT L ++ CV G G C H
Sbjct: 98 VSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGSKEEGRCIH 157
Query: 71 CICVKFGLDLDFSVGNCLMTMYVKCGSVDYGRKLFDQVPEKGLITWNAMISGYAQNGLAT 130
+ +KFG+ + V N + Y K G + KLF+ + K L++WN MI + QNGLA
Sbjct: 158 GLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWNTMIVIHLQNGLAE 217
Query: 131 HVLELYREMKSLGVCPDAVTFVGVLSSCAHLGAHSVGLEVEQQIQANGFGSNPFLNNALI 190
L + + +G PD TF+ VL SC +G + + I GF N + AL+
Sbjct: 218 KGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFGGFSGNKCITTALL 277
Query: 191 NMYARCGNLKKARAIFDGMPRKTVVSWTAIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGT 250
++Y++ G L+ + +F + ++WTA++ Y HG G A++ F+ M+ GI PD
Sbjct: 278 DLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHFELMVHYGISPDHV 337
Query: 251 AFVSVLSACSHAGLTDKGLEYFYGMKNKYGLQPGPEHYTCMVDLLGRAGQLNEALELIES 310
F +L+ACSH+GL ++G YF M +Y + P +HY+CMVDLLGR+G L +A LI+
Sbjct: 338 TFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGRSGLLQDAYGLIKE 397
Query: 311 MLVEPDGAVWGALLGACKIHKNVELAELAFGKVIKLEPMNTGYYVLLSNIYSEARNLDGI 370
M +EP VWGALLGAC+++K+ +L A ++ +LEP + YV+LSNIYS +
Sbjct: 398 MPMEPSSGVWGALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVMLSNIYSASGLWKDA 457
Query: 371 MRVRMMMRERRLKKDPGYSYVELKGRVHLFMVGDRNHHQTVEIYRMLDKLENLVQEHDGT 430
R+R +M+++ L + G SY+E ++H F+VGD +H ++ +I + L ++ ++ G
Sbjct: 458 SRIRNLMKQKGLVRASGCSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSEMGY 517
Query: 431 KRSD--------QKNSEEHLNDTEVHSEKLAIAFGIINTSPGTEIVVMKNLRICGDCHLF 482
K + EE +N HSEK+A+AFG++ SP I++ KNLRICGDCH
Sbjct: 518 KSKTEFVLHDVGEDVKEEMINQ---HSEKIAMAFGLLVVSPMEPIIIRKNLRICGDCHET 574
Query: 483 IKLVSKIVDRQFIVRDATRFHHFKSGFCSCKDYW 516
K +S I R+ I+RD+ RFHHF G CSC DYW
Sbjct: 575 AKAISLIEKRRIIIRDSKRFHHFLDGSCSCSDYW 608
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 138/292 (47%), Gaps = 7/292 (2%)
Query: 41 QGVEINSVTMLCLLPICVDPGYLWLGMCCHCICVKFGLDLDFSVGNCLMTMYVKCGSVDY 100
++ N +++ + CV + L HC VK +G+ L+ Y++ G
Sbjct: 28 HSLDANVSSLIAAVKSCVS---IELCRLLHCKVVKSVSYRHGFIGDQLVGCYLRLGHDVC 84
Query: 101 GRKLFDQVPEKGLITWNAMISGYAQNGLATHVLELYREM--KSLGVCPDAVTFVGVLSSC 158
KLFD++PE+ L++WN++ISGY+ G E+ M +G P+ VTF+ ++S+C
Sbjct: 85 AEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISAC 144
Query: 159 AHLGAHSVGLEVEQQIQANGFGSNPFLNNALINMYARCGNLKKARAIFDGMPRKTVVSWT 218
+ G+ G + + G + NA IN Y + G+L + +F+ + K +VSW
Sbjct: 145 VYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWN 204
Query: 219 AIIGGYGIHGHGEVAVQLFDEMLKSGIRPDGTAFVSVLSACSHAGLTDKGLEYFYGMKNK 278
+I + +G E + F+ + G PD F++VL +C G+ + + +G+
Sbjct: 205 TMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVV-RLAQGIHGLIMF 263
Query: 279 YGLQPGPEHYTCMVDLLGRAGQLNEALELIESMLVEPDGAVWGALLGACKIH 330
G T ++DL + G+L ++ + + PD W A+L A H
Sbjct: 264 GGFSGNKCITTALLDLYSKLGRLEDSSTVFHE-ITSPDSMAWTAMLAAYATH 314
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 196,909,398
Number of Sequences: 539616
Number of extensions: 8417217
Number of successful extensions: 26236
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 19849
Number of HSP's gapped (non-prelim): 2220
length of query: 516
length of database: 191,569,459
effective HSP length: 122
effective length of query: 394
effective length of database: 125,736,307
effective search space: 49540104958
effective search space used: 49540104958
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)